Query 043518
Match_columns 273
No_of_seqs 202 out of 1014
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 09:42:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043518.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043518hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a2n_B Isoprenylcysteine carbo 99.5 1.7E-14 5.7E-19 124.9 9.9 117 154-273 73-193 (194)
2 2dzj_A Synaptic glycoprotein S 98.2 4.9E-07 1.7E-11 68.2 3.3 40 2-49 49-88 (88)
3 1yx5_B Ubiquitin; proteasome, 97.6 5E-05 1.7E-09 57.5 4.3 48 3-58 36-84 (98)
4 1v6e_A Cytoskeleton-associated 97.2 0.00019 6.4E-09 54.3 3.6 46 3-55 44-93 (95)
5 1t0y_A Tubulin folding cofacto 96.8 0.00084 2.9E-08 53.1 3.7 44 3-53 43-90 (122)
6 3u5e_m 60S ribosomal protein L 96.2 0.0016 5.5E-08 51.8 1.7 52 4-63 37-88 (128)
7 1ndd_A NEDD8, protein (ubiquit 96.0 0.0068 2.3E-07 42.6 4.2 40 3-50 36-75 (76)
8 1wh3_A 59 kDa 2'-5'-oligoadeny 96.0 0.005 1.7E-07 44.9 3.5 44 3-54 43-86 (87)
9 3a9j_A Ubiquitin; protein comp 95.6 0.013 4.5E-07 41.0 4.3 40 3-50 36-75 (76)
10 1sif_A Ubiquitin; hydrophobic 95.5 0.01 3.5E-07 43.8 3.5 40 3-50 45-84 (88)
11 2kzr_A Ubiquitin thioesterase 95.5 0.0092 3.1E-07 43.9 3.2 40 3-50 36-78 (86)
12 3n3k_B Ubiquitin; hydrolase, p 95.5 0.014 4.7E-07 42.1 4.1 40 3-50 39-78 (85)
13 3phx_B Ubiquitin-like protein 95.4 0.014 4.7E-07 41.7 4.0 37 3-47 40-76 (79)
14 2bwf_A Ubiquitin-like protein 95.4 0.014 4.7E-07 41.3 3.9 36 3-48 39-74 (77)
15 1wy8_A NP95-like ring finger p 95.2 0.017 5.9E-07 42.2 4.0 41 3-51 45-85 (89)
16 3mtn_B UBA80, ubcep1, ubiquiti 95.1 0.018 6E-07 41.4 3.8 40 3-50 39-78 (85)
17 4fbj_B NEDD8; effector-HOST ta 95.1 0.016 5.4E-07 42.7 3.6 41 3-51 36-76 (88)
18 3k9o_B Ubiquitin, UBB+1; E2-25 95.1 0.022 7.6E-07 42.2 4.3 40 3-50 37-76 (96)
19 2wyq_A HHR23A, UV excision rep 95.1 0.02 7E-07 41.3 4.0 34 3-46 44-77 (85)
20 2hj8_A Interferon-induced 17 k 95.0 0.015 5.1E-07 42.8 3.1 37 3-47 40-76 (88)
21 2faz_A Ubiquitin-like containi 94.9 0.022 7.5E-07 40.5 3.8 33 3-45 40-72 (78)
22 1uel_A HHR23B, UV excision rep 94.8 0.025 8.7E-07 42.2 4.0 34 3-46 39-72 (95)
23 2l7r_A Ubiquitin-like protein 94.7 0.016 5.6E-07 43.2 2.7 39 3-49 53-91 (93)
24 2kdi_A Ubiquitin, vacuolar pro 94.6 0.029 9.8E-07 43.6 4.0 40 3-50 45-84 (114)
25 4hcn_B Polyubiquitin, ubiquiti 94.6 0.024 8.2E-07 42.6 3.4 40 3-50 58-97 (98)
26 1uh6_A Ubiquitin-like 5; beta- 94.6 0.016 5.3E-07 44.5 2.4 30 3-40 64-93 (100)
27 3dbh_I NEDD8; cell cycle, acti 94.6 0.022 7.4E-07 41.4 3.0 37 3-47 48-84 (88)
28 3v6c_B Ubiquitin; structural g 94.6 0.029 9.8E-07 41.4 3.7 32 3-42 53-84 (91)
29 2dzi_A Ubiquitin-like protein 94.5 0.028 9.7E-07 40.0 3.5 35 3-45 43-77 (81)
30 2kd0_A LRR repeats and ubiquit 94.5 0.026 8.9E-07 41.4 3.3 34 3-46 47-80 (85)
31 2uyz_B Small ubiquitin-related 94.5 0.022 7.6E-07 40.6 2.9 40 3-50 39-78 (79)
32 2kk8_A Uncharacterized protein 94.5 0.025 8.4E-07 41.5 3.2 32 3-42 46-78 (84)
33 4b6w_A Tubulin-specific chaper 94.5 0.032 1.1E-06 41.4 3.7 45 4-51 41-85 (86)
34 2kan_A Uncharacterized protein 94.3 0.024 8.3E-07 42.4 2.8 40 3-50 50-90 (94)
35 1wgd_A Homocysteine-responsive 94.2 0.032 1.1E-06 41.4 3.2 42 2-51 46-89 (93)
36 1we6_A Splicing factor, putati 94.1 0.049 1.7E-06 41.8 4.3 42 3-52 67-108 (111)
37 2klc_A Ubiquilin-1; ubiquitin- 94.1 0.039 1.3E-06 41.8 3.6 34 3-46 60-93 (101)
38 1yqb_A Ubiquilin 3; structural 94.0 0.041 1.4E-06 41.7 3.6 38 3-48 57-94 (100)
39 3plu_A Ubiquitin-like modifier 94.0 0.04 1.4E-06 41.7 3.4 34 4-45 58-91 (93)
40 3m63_B Ubiquitin domain-contai 93.9 0.04 1.4E-06 41.8 3.4 36 3-48 63-98 (101)
41 1j8c_A Ubiquitin-like protein 93.8 0.045 1.5E-06 43.3 3.7 40 3-50 67-106 (125)
42 2ojr_A Ubiquitin; lanthide-bin 93.8 0.062 2.1E-06 41.3 4.3 40 3-50 71-110 (111)
43 3m62_B UV excision repair prot 93.6 0.052 1.8E-06 41.5 3.5 36 3-46 37-72 (106)
44 4a20_A Ubiquitin-like protein 93.6 0.058 2E-06 41.0 3.7 36 3-46 58-94 (98)
45 3vdz_A Ubiquitin-40S ribosomal 93.5 0.07 2.4E-06 41.1 4.2 40 3-50 71-110 (111)
46 1we7_A SF3A1 protein; structur 93.4 0.049 1.7E-06 42.2 3.1 41 3-51 71-111 (115)
47 2daf_A FLJ35834 protein; hypot 93.3 0.049 1.7E-06 43.0 3.0 39 5-51 54-92 (118)
48 1wia_A Hypothetical ubiquitin- 93.3 0.05 1.7E-06 40.4 3.0 32 5-46 42-74 (95)
49 1wx7_A Ubiquilin 3; ubiquitin- 93.2 0.066 2.2E-06 40.7 3.5 40 3-50 52-91 (106)
50 1v5t_A 8430435I17RIK protein; 93.2 0.043 1.5E-06 40.6 2.4 37 3-46 43-79 (90)
51 1v5o_A 1700011N24RIK protein; 92.9 0.046 1.6E-06 41.4 2.3 35 3-47 47-82 (102)
52 1wx8_A Riken cDNA 4931431F19; 92.9 0.034 1.2E-06 41.4 1.4 39 3-49 52-90 (96)
53 1ttn_A DC-UBP, dendritic cell- 92.8 0.061 2.1E-06 41.0 2.8 34 3-46 59-92 (106)
54 1wyw_B Ubiquitin-like protein 92.7 0.078 2.7E-06 39.7 3.3 40 3-50 57-96 (97)
55 3l0w_B Monoubiquitinated proli 92.7 0.11 3.8E-06 43.1 4.4 40 3-50 36-75 (169)
56 3b1l_X E3 ubiquitin-protein li 91.8 0.021 7.2E-07 40.3 0.0 33 4-44 37-69 (76)
57 4eew_A Large proline-rich prot 92.4 0.099 3.4E-06 38.0 3.5 29 3-40 53-81 (88)
58 4dwf_A HLA-B-associated transc 92.3 0.13 4.3E-06 37.5 3.9 37 3-48 41-77 (90)
59 4ajy_B Transcription elongatio 91.9 0.11 3.7E-06 41.0 3.3 38 3-48 37-81 (118)
60 2kj6_A Tubulin folding cofacto 91.9 0.1 3.4E-06 39.5 3.0 40 4-50 53-96 (97)
61 1wju_A NEDD8 ultimate buster-1 91.8 0.081 2.8E-06 40.5 2.4 30 3-40 55-84 (100)
62 4dbg_A Ranbp-type and C3HC4-ty 91.7 0.16 5.4E-06 39.2 3.9 36 3-46 62-98 (105)
63 1wgg_A Ubiquitin carboxyl-term 91.4 0.09 3.1E-06 39.5 2.2 33 3-46 43-75 (96)
64 1wxv_A BAG-family molecular ch 91.2 0.1 3.6E-06 38.4 2.4 34 3-46 47-81 (92)
65 1x1m_A Ubiquitin-like protein 91.0 0.15 5.2E-06 38.8 3.2 36 3-46 62-98 (107)
66 1wf9_A NPL4 family protein; be 91.0 0.15 5.2E-06 38.9 3.2 46 3-50 43-95 (107)
67 1wjn_A Tubulin-folding protein 90.8 0.27 9.2E-06 36.6 4.4 46 4-52 49-95 (97)
68 3b08_A Polyubiquitin-C, ubiqui 90.3 0.27 9.2E-06 38.9 4.3 38 3-48 36-73 (152)
69 3rt3_B Ubiquitin-like protein 90.0 0.29 9.8E-06 39.4 4.2 38 3-47 38-76 (159)
70 2lxa_A Ubiquitin-like protein 90.0 0.14 4.9E-06 37.8 2.2 30 3-40 40-70 (87)
71 3u30_A Ubiquitin, linear DI-ub 89.8 0.3 1E-05 40.0 4.3 38 3-48 56-93 (172)
72 2fnj_B Transcription elongatio 89.8 0.16 5.6E-06 39.9 2.5 37 3-47 37-80 (118)
73 2kjr_A CG11242; UBL, ubiquitin 89.4 0.16 5.5E-06 38.2 2.1 40 4-48 54-94 (95)
74 2dzm_A FAS-associated factor 1 88.3 0.15 5.2E-06 38.8 1.3 40 4-50 45-84 (100)
75 1v86_A DNA segment, CHR 7, way 87.7 0.26 8.7E-06 36.7 2.2 33 3-46 52-84 (95)
76 2kdb_A Homocysteine-responsive 87.5 0.19 6.4E-06 38.1 1.4 31 5-45 65-97 (99)
77 3u5c_f 40S ribosomal protein S 87.4 0.11 3.8E-06 42.5 0.0 39 4-50 37-75 (152)
78 2gow_A HCG-1 protein, ubiquiti 86.0 0.73 2.5E-05 36.4 4.1 39 5-51 63-103 (125)
79 1wgh_A Ubiquitin-like 3, HCG-1 85.2 0.66 2.3E-05 36.2 3.5 40 4-51 61-102 (116)
80 1oqy_A HHR23A, UV excision rep 84.9 0.87 3E-05 42.4 4.7 32 3-42 46-77 (368)
81 1se9_A Ubiquitin family; ubiqu 84.2 0.96 3.3E-05 35.9 4.0 27 6-40 63-89 (126)
82 3shq_A UBLCP1; phosphatase, hy 80.4 1 3.4E-05 41.1 3.2 35 4-45 41-75 (320)
83 1v2y_A 3300001G02RIK protein; 80.1 0.44 1.5E-05 36.6 0.6 30 7-46 62-92 (105)
84 3rt3_B Ubiquitin-like protein 72.1 2.4 8.1E-05 33.9 3.0 30 21-50 127-156 (159)
85 3b08_A Polyubiquitin-C, ubiqui 71.6 2.6 8.9E-05 32.9 3.1 29 21-49 122-150 (152)
86 2io1_B Small ubiquitin-related 68.2 3.9 0.00013 30.3 3.2 39 4-50 44-82 (94)
87 2io0_B Small ubiquitin-related 63.0 6.9 0.00024 28.8 3.7 39 4-50 42-80 (91)
88 1wm3_A Ubiquitin-like protein 59.4 7.1 0.00024 27.1 3.0 32 4-45 38-69 (72)
89 2bps_A YUKD protein; ubiquitin 57.9 5.9 0.0002 28.9 2.4 24 20-45 56-79 (81)
90 2d07_B Ubiquitin-like protein 57.3 8.6 0.00029 28.3 3.3 36 4-47 54-89 (93)
91 3a4r_A Nfatc2-interacting prot 55.0 7.8 0.00027 27.5 2.7 33 4-46 45-77 (79)
92 2daj_A KIAA0977 protein, COBL- 54.5 11 0.00037 27.9 3.3 37 3-49 46-82 (91)
93 2eke_C Ubiquitin-like protein 48.5 14 0.00048 28.0 3.3 36 4-47 67-102 (106)
94 1wz0_A Ubiquitin-like protein 47.0 11 0.00039 28.4 2.6 36 4-47 61-96 (104)
95 2kc2_A Talin-1, F1; FERM, adhe 41.9 13 0.00045 29.4 2.2 24 21-46 96-119 (128)
96 2k8h_A Small ubiquitin protein 41.5 11 0.00037 28.9 1.7 36 4-47 63-98 (110)
97 2pjh_A Protein NPL4, nuclear p 40.0 16 0.00055 26.0 2.3 20 26-47 59-78 (80)
98 3kyd_D Small ubiquitin-related 33.0 45 0.0015 25.7 4.0 35 5-47 78-112 (115)
99 1y8x_B Ubiquitin-activating en 25.3 33 0.0011 25.7 1.9 21 28-50 65-85 (98)
100 1rpq_W Peptide E131; receptor- 23.0 27 0.00092 19.4 0.8 10 203-212 1-10 (26)
101 3goe_A DNA repair protein RAD6 20.7 88 0.003 22.7 3.3 21 21-41 56-76 (82)
No 1
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=99.54 E-value=1.7e-14 Score=124.86 Aligned_cols=117 Identities=14% Similarity=0.033 Sum_probs=91.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhh-cccC-CCCCCcccccCCccccccccchhHHHHHHHHHHHHhhhHHHHHH-
Q 043518 154 VSDLQMKIGFAFGIICQIANFYCHILLKN-LRSA-DGSGGYQIPRGFLFNIVTCANYTTEIYQWLGFNIATQTVAGYIF- 230 (273)
Q Consensus 154 ~~~~~~~~G~~lF~ig~~~n~~~h~~L~~-LR~~-~g~~~y~iP~gglF~~VscPNYf~Eil~w~gf~l~~~s~~~~lf- 230 (273)
...+..++|++++++|......++.+|.+ ++.. +..++.++.++|+|++|+||||++|++.|+|++++++++.+++.
T Consensus 73 ~p~~~~~~G~~l~l~G~~l~~~a~~~Lg~~f~~~~~~~~~~~Lvt~G~y~~vRHP~Y~G~~l~~~g~~l~~~s~~~~~~~ 152 (194)
T 4a2n_B 73 LPDSIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILSNWVVLIFG 152 (194)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCSSCCEETTCCCCCSSTTTTBSSHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCeeeecCcchhccCccHHHHHHHHHHHHHHhccHHHHHHH
Confidence 35678899999999999999999999954 4421 11245678899999999999999999999999999887765542
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccccccCC
Q 043518 231 -LVVAALIMTNWALAKHRRLKKLFDGKDGRPKYPRRWVILPPFL 273 (273)
Q Consensus 231 -~~~~~~~m~~~A~~~h~wY~kkFg~~~~~~~Ypk~RkalIPfi 273 (273)
+++.+. +..++..-+++.+++||++ |++|.++.+++||+|
T Consensus 153 ~~~~~~~-~~~ri~~EE~~L~~~fG~~--Y~~Y~~rv~r~iP~i 193 (194)
T 4a2n_B 153 IVAWAIL-YFIRVPKEEELLIEEFGDE--YIEYMGKTGRLFPKV 193 (194)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHTHH--HHHHHHHCBSSSCC-
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHhCHH--HHHHHHhCCeeCcee
Confidence 223333 3467777888889999964 478888888999986
No 2
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.25 E-value=4.9e-07 Score=68.19 Aligned_cols=40 Identities=33% Similarity=0.645 Sum_probs=36.5
Q ss_pred CCCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEccc
Q 043518 2 KFYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDL 49 (273)
Q Consensus 2 ~~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kdl 49 (273)
+++|+||||.+. .+|+.|+|+++|++|++++++ +|++|||
T Consensus 49 ~i~~~~QrL~~~------~~Gk~L~D~~tL~~y~i~~~s--tl~~KDL 88 (88)
T 2dzj_A 49 QWYPARQSLRLD------PKGKSLKDEDVLQKLPVGTTA--TLYFRDL 88 (88)
T ss_dssp SSCTTTCCEESS------TTSCCCCTTCBTTTSSCCSEE--EEEECCC
T ss_pred CCChHHeEEEec------CCCcCcCCCCCHHHcCCCCCC--EEEEEeC
Confidence 467999999987 678899999999999999998 9999997
No 3
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=97.60 E-value=5e-05 Score=57.53 Aligned_cols=48 Identities=21% Similarity=0.382 Sum_probs=33.3
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEccc-CCCCchHHH
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDL-GPQVSYRTL 58 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kdl-G~qi~~r~~ 58 (273)
..|++|||.+. |+.|+|+++|++||+++++.+.+.+++. |+|++||++
T Consensus 36 i~~~~qrL~~~--------Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i~~~~v 84 (98)
T 1yx5_B 36 IPPDQQRLIFA--------GKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPNSSSV 84 (98)
T ss_dssp CCGGGEEEEET--------TEECCTTSBTGGGTCCTTCEEEEEECCCCC--------
T ss_pred cChhhEEEEEC--------CEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcCccccC
Confidence 45799999864 6689999999999999999666778888 689999974
No 4
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.25 E-value=0.00019 Score=54.28 Aligned_cols=46 Identities=13% Similarity=-0.057 Sum_probs=36.8
Q ss_pred CCccceeEecCCCCCCCCCccc----cCcccccccccCCCCCceEEEEcccCCCCch
Q 043518 3 FYPSRQRLTLPLPPGSKQRATA----LDYKKSLKEYSDGNSGNLTVVFKDLGPQVSY 55 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~----l~~~k~l~~~~~~~~~~~~~~~kdlG~qi~~ 55 (273)
..|+||||.+. +.+++. ++|+++|.+||+.+|+ +|.+.|+|||+-.
T Consensus 44 ip~~~qrL~~~-----~~~g~~~~~l~~D~~tL~~y~i~~g~--~l~v~d~~P~~~~ 93 (95)
T 1v6e_A 44 SPASCMELELY-----GADDKFYSKLDQEDALLGSYPVDDGC--RIHVIDHSGSGPS 93 (95)
T ss_dssp SCTTTCBCEEE-----CSSSCEEEECCCSSSBTTSSSCCTTC--EEEEBCCSCCSSS
T ss_pred CCHHHeEEEEe-----CCCCccccccCCCcCCHhHCCCCCCC--EEEEEECCccccc
Confidence 45799999876 112333 5899999999999999 9999999999853
No 5
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=96.80 E-value=0.00084 Score=53.13 Aligned_cols=44 Identities=18% Similarity=0.043 Sum_probs=35.8
Q ss_pred CCccceeEecCCCCCCCCCccc----cCcccccccccCCCCCceEEEEcccCCCC
Q 043518 3 FYPSRQRLTLPLPPGSKQRATA----LDYKKSLKEYSDGNSGNLTVVFKDLGPQV 53 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~----l~~~k~l~~~~~~~~~~~~~~~kdlG~qi 53 (273)
..|+||||.+. | .+++. ++|+++|.+||+.+|+ +|.++|+|||+
T Consensus 43 ip~~~qrL~~~---g--~~~~~~~~l~~D~~tL~~y~i~~g~--~ihvvd~~p~~ 90 (122)
T 1t0y_A 43 TTVDSMRIQLF---D--GDDQLKGELTDGAKSLKDLGVRDGY--RIHAVDVTGGN 90 (122)
T ss_dssp CCTTTEEEEEE---C--SSSSEEEECCCCSSBTTTTTCCSSE--EEEEEECTTCC
T ss_pred CCHHHeEEEEe---c--CCCccccccCCCcCCHHHCCCCCCC--EEEEEeCCCCC
Confidence 35899999986 1 12332 4789999999999999 99999999998
No 6
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=96.16 E-value=0.0016 Score=51.76 Aligned_cols=52 Identities=19% Similarity=0.266 Sum_probs=9.9
Q ss_pred CccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEcccCCCCchHHHHHHHH
Q 043518 4 YPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDLGPQVSYRTLFFFEY 63 (273)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kdlG~qi~~r~~f~~Ey 63 (273)
.|++|+|.. +|+.|+|+++|++||+++++.+.+.++..|..+.|.++-+.|+
T Consensus 37 p~~~QrLi~--------~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~~~~sl~~la~k 88 (128)
T 3u5e_m 37 PPDQQRLIF--------AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASK 88 (128)
T ss_dssp ------------------------------------------------CCCHHHHHHHHH
T ss_pred ChHHEEEEE--------CCEECCCCCchhhhccCCCCEEEEEEEcCCCCCChhHHHHHHH
Confidence 468888875 3668999999999999999977788899999999988777766
No 7
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=96.01 E-value=0.0068 Score=42.55 Aligned_cols=40 Identities=23% Similarity=0.315 Sum_probs=31.3
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEcccC
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDLG 50 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kdlG 50 (273)
..|++|+|... |+.|+|+++|+++|+++++.+.+.++..|
T Consensus 36 i~~~~q~L~~~--------g~~L~d~~tL~~~~i~~g~~i~l~~~~~G 75 (76)
T 1ndd_A 36 IPPQQQRLIYS--------GKQMNDEKTAADYKILGGSVLHLVLALRG 75 (76)
T ss_dssp CCGGGEEEEET--------TEECCTTSBGGGGTCCTTCEEEEEECCC-
T ss_pred cChHHEEEEEC--------CEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 35799999864 66899999999999999995556666555
No 8
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.97 E-value=0.005 Score=44.90 Aligned_cols=44 Identities=20% Similarity=0.123 Sum_probs=35.9
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEcccCCCCc
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDLGPQVS 54 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kdlG~qi~ 54 (273)
..|+||||.+. ++.|+|+++|++|++++++.+.+.++-.|..++
T Consensus 43 i~~~~qrL~~~--------Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG~~~ 86 (87)
T 1wh3_A 43 LPKKQQQLEFQ--------GQVLQDWLGLGIYGIQDSDTLILSKKKGSGPSS 86 (87)
T ss_dssp CCTTTEEEEET--------TEECCSSSBHHHHTCCTTEEEEEEECSCCCSCC
T ss_pred CChHHEEEEEC--------CEEccCCCCHHHCCCCCCCEEEEEEeccCCCCC
Confidence 45799999864 668999999999999999966677788887654
No 9
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=95.60 E-value=0.013 Score=41.04 Aligned_cols=40 Identities=25% Similarity=0.452 Sum_probs=30.8
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEcccC
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDLG 50 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kdlG 50 (273)
..|++|+|... |+.|+|+++|+++|+++++.+.+.++-.|
T Consensus 36 i~~~~q~L~~~--------g~~L~d~~tL~~~~i~~g~~i~l~~~~~G 75 (76)
T 3a9j_A 36 IPPDQQRLIFA--------GKQLEDGRTLSDYNIQRESTLHLVLRLRG 75 (76)
T ss_dssp CCGGGEEEEET--------TEECCTTCBTGGGTCCTTCEEEEEECCCC
T ss_pred cCHHHeEEEEC--------CeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 45799999864 56789999999999999995555555444
No 10
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=95.47 E-value=0.01 Score=43.76 Aligned_cols=40 Identities=25% Similarity=0.456 Sum_probs=29.4
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEcccC
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDLG 50 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kdlG 50 (273)
..|+||||... |+.|+|+++|++||+++++.+.+.++-.|
T Consensus 45 ip~~~qrL~~~--------Gk~L~D~~tL~~~gi~~g~~i~l~~r~~G 84 (88)
T 1sif_A 45 IPPDQQRLIFA--------GKQLEDGRTLSDYNIQKESTLHLVLRLRG 84 (88)
T ss_dssp CCGGGCEEEET--------TEECCTTSBSGGGTCCTTCEEEEEC----
T ss_pred cChhhEEEEEC--------CEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 45799999864 66899999999999999995556656555
No 11
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=95.47 E-value=0.0092 Score=43.89 Aligned_cols=40 Identities=13% Similarity=0.188 Sum_probs=30.3
Q ss_pred CCccceeEecCCCCCCCCCcccc--C-cccccccccCCCCCceEEEEcccC
Q 043518 3 FYPSRQRLTLPLPPGSKQRATAL--D-YKKSLKEYSDGNSGNLTVVFKDLG 50 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l--~-~~k~l~~~~~~~~~~~~~~~kdlG 50 (273)
..|+||||... ..++.+ + ++++|+++|+.+|+ +|++++-.
T Consensus 36 i~~~~qrL~~~------~p~k~l~l~~~~~tL~~~gl~~g~--~l~v~~~~ 78 (86)
T 2kzr_A 36 IAPGSQRILVG------YPPECLDLSDRDITLGDLPIQSGD--MLIVEEDQ 78 (86)
T ss_dssp CCTTTCCCEES------SCCCCCCCCCSSCBTTTSSCCTTC--EEECCCCS
T ss_pred CCccceEEEeC------CCCcccccCCCCCCHHHcCCCCCC--EEEEEeCC
Confidence 45799999875 222344 3 78999999999999 89988753
No 12
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=95.46 E-value=0.014 Score=42.08 Aligned_cols=40 Identities=28% Similarity=0.445 Sum_probs=31.4
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEcccC
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDLG 50 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kdlG 50 (273)
..|+||||... ++.|+|+++|++|++++++.+.+.++-.|
T Consensus 39 ip~~~qrL~~~--------g~~L~d~~tL~~~~i~~~~~i~l~~rl~G 78 (85)
T 3n3k_B 39 IPPDQQRLIFA--------GKQLEDGRTLSDYNIHNHSALYLLLKLRG 78 (85)
T ss_dssp CCGGGEEEEET--------BEECCTTCBTTTTTCCTTCEEEEEECCC-
T ss_pred CCHHHEEEEEC--------CeECCCCCCHHHCCCCCCCEEEEEEeccC
Confidence 45799999864 66899999999999999996666666554
No 13
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=95.44 E-value=0.014 Score=41.74 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=29.5
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEc
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFK 47 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~k 47 (273)
..|++|||... |+.|+|+++|++||+++++.+.+.++
T Consensus 40 ip~~~qrL~~~--------G~~L~d~~tL~~~~i~~~~~l~l~~r 76 (79)
T 3phx_B 40 VQDDLFWLTFE--------GKPLEDQLPLGEYGLKPLSTVFMNLR 76 (79)
T ss_dssp CCGGGEEEEET--------TEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CCHHHEEEEEC--------CEECCCCCcHHHCCCCCCCEEEEEEe
Confidence 35799999864 67899999999999999995555544
No 14
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=95.42 E-value=0.014 Score=41.29 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=29.6
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEcc
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKD 48 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kd 48 (273)
..|+||||... |+.|+|+++|++||+++|+ ++.+.+
T Consensus 39 i~~~~qrL~~~--------gk~L~d~~tL~~~~i~~g~--~i~l~~ 74 (77)
T 2bwf_A 39 IPVANQRLIYS--------GKILKDDQTVESYHIQDGH--SVHLVK 74 (77)
T ss_dssp CCGGGEEEEET--------TEECCTTSBTGGGTCCTTC--EEEEEE
T ss_pred CCHHHEEEEEC--------CeEcCCCCCHHHcCCCCCC--EEEEEE
Confidence 35799999864 6689999999999999999 777654
No 15
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=95.22 E-value=0.017 Score=42.18 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=33.0
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEcccCC
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDLGP 51 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kdlG~ 51 (273)
..|+||||.+. ++.|+|+++|++|++++++.+.+.++..|-
T Consensus 45 ip~~~qrL~~~--------gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG 85 (89)
T 1wy8_A 45 VRPECQRLFYR--------GKQLENGYTLFDYDVGLNDIIQLLVRPDSG 85 (89)
T ss_dssp CCTTTEEEEET--------TEECCSSSBHHHHTCCTTCEEEEEECCCCS
T ss_pred cChhhEEEEEC--------CeECCCCCCHHHCCCCCCCEEEEEEeCCCC
Confidence 45799999864 668999999999999999966666676654
No 16
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=95.15 E-value=0.018 Score=41.43 Aligned_cols=40 Identities=23% Similarity=0.398 Sum_probs=31.3
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEcccC
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDLG 50 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kdlG 50 (273)
..|+||||... ++.|+|+++|++|++++++.+.+.++-.|
T Consensus 39 i~~~~qrL~~~--------g~~L~d~~tL~~~~i~~~~~l~l~~r~~G 78 (85)
T 3mtn_B 39 IPPDQQRLIFA--------GKQLEDGRTLSDYNIQKWSTLFLLLRLRG 78 (85)
T ss_dssp CCGGGCEEEET--------TEECCTTSBTGGGTCCTTCEEEEECCCCC
T ss_pred cChHHEEEEEC--------CEECCCCCCHHHcCCCCCCEEEEEEECcC
Confidence 35799999864 66899999999999999995555555544
No 17
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=95.12 E-value=0.016 Score=42.73 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=31.4
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEcccCC
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDLGP 51 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kdlG~ 51 (273)
..|++|||.. +|+.|+|+++|++|++++++.+.+.++-.|.
T Consensus 36 ip~~~qrLi~--------~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg 76 (88)
T 4fbj_B 36 IPPQQQRLIY--------SGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (88)
T ss_dssp CCGGGCEEEE--------TTEECCTTSBTTTTTCCTTCEEEEECBCC--
T ss_pred cChhHEEEEE--------CCeECCCCCcHHHcCCCCCCEEEEEEECCCC
Confidence 3579999985 4678999999999999999955566665553
No 18
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=95.08 E-value=0.022 Score=42.18 Aligned_cols=40 Identities=25% Similarity=0.456 Sum_probs=32.1
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEcccC
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDLG 50 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kdlG 50 (273)
..|+||||... |+.|+|+++|++|++++++.+.+.++-.|
T Consensus 37 ip~~~qrL~~~--------G~~L~d~~tL~~~~i~~~~~i~l~~r~~g 76 (96)
T 3k9o_B 37 IPPDQQRLIFA--------GKQLEDGRTLSDYNIQKESTLHLVLRLRG 76 (96)
T ss_dssp CCGGGEEEEET--------TEECCTTSBTGGGTCCTTCEEEEEECCCC
T ss_pred CChhHEEEEEC--------CEECCCCCcHHHcCCCCCCEEEEEEEcCC
Confidence 35799999864 66899999999999999996666666555
No 19
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=95.07 E-value=0.02 Score=41.27 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=28.4
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEE
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVF 46 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~ 46 (273)
..|+||||... |+.|+|+++|++||+++++ ++.+
T Consensus 44 ip~~~qrLi~~--------Gk~L~D~~tL~~~~i~~g~--~i~l 77 (85)
T 2wyq_A 44 FPVAGQKLIYA--------GKILSDDVPIRDYRIDEKN--FVVV 77 (85)
T ss_dssp CCGGGEEEEET--------TEECCTTSBGGGGCCCTTS--EEEE
T ss_pred CCHHHeEEEEC--------CEECcCCCCHHHcCCCCCC--EEEE
Confidence 45799999864 6689999999999999999 6654
No 20
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=94.99 E-value=0.015 Score=42.82 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=28.9
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEc
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFK 47 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~k 47 (273)
..|+||||.+. |+.|+|+++|++||+++++.+.+..+
T Consensus 40 ip~~~qrL~~~--------Gk~L~D~~tL~~~~I~~g~~i~l~~~ 76 (88)
T 2hj8_A 40 VQDDLFWLTFE--------GKPLEDQLPLGEYGLKPLSTVFMNLR 76 (88)
T ss_dssp SCTTTEEEESS--------SSCCCTTSBHHHHHCSTTCEEEEEEC
T ss_pred CChhHEEEEEC--------CEECCCCCcHHHcCCCCCCEEEEEEE
Confidence 45799999864 56799999999999999994444433
No 21
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=94.95 E-value=0.022 Score=40.49 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=27.3
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEE
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVV 45 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~ 45 (273)
..|+||||... |+.|+|+++|++||+++|+ ++.
T Consensus 40 ip~~~qrL~~~--------g~~L~d~~tL~~~~i~~g~--~i~ 72 (78)
T 2faz_A 40 VEPGLQRLFYR--------GKQMEDGHTLFDYEVRLND--TIQ 72 (78)
T ss_dssp CCGGGEEEEET--------TEECCTTCBTTTTTCCTTC--EEE
T ss_pred cChhhEEEEEC--------CEECCCCCCHHHcCCCCCC--EEE
Confidence 45799999864 5679999999999999998 544
No 22
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=94.81 E-value=0.025 Score=42.19 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=28.1
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEE
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVF 46 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~ 46 (273)
..|+||||.+. |+.|+|+++|++||+++|+ ++.+
T Consensus 39 ip~~~qrLi~~--------Gk~L~D~~tL~~ygI~~g~--~i~l 72 (95)
T 1uel_A 39 FPVAGQKLIYA--------GKILNDDTALKEYKIDEKN--FVVV 72 (95)
T ss_dssp CCTTTEEEEET--------TEECCTTSBGGGGTCCSSS--EEEE
T ss_pred CChhhEEEEEC--------CEECCCcCcHHHCCCCCCC--EEEE
Confidence 45799999864 6789999999999999999 5543
No 23
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=94.75 E-value=0.016 Score=43.21 Aligned_cols=39 Identities=21% Similarity=0.199 Sum_probs=30.0
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEccc
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDL 49 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kdl 49 (273)
..|+||||.+. |+.|+|+++|++|++++++.+.+.++-.
T Consensus 53 ip~~~qrLi~~--------Gk~L~D~~tL~~y~I~~gstI~lv~rl~ 91 (93)
T 2l7r_A 53 IAPEDQVVLLA--------GAPLEDEATLGQCGVEALTTLEVAGRML 91 (93)
T ss_dssp CCGGGCEEEET--------TEECCTTSBHHHHTCCSSCEEEEECCCC
T ss_pred cChhHEEEEEC--------CEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 45799999864 6689999999999999999444444433
No 24
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=94.62 E-value=0.029 Score=43.60 Aligned_cols=40 Identities=25% Similarity=0.429 Sum_probs=32.1
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEcccC
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDLG 50 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kdlG 50 (273)
..|+||||... |+.|+|+++|++||+++++.+.+.++..|
T Consensus 45 ip~~~qrLi~~--------Gk~L~D~~tL~~ygI~~gstI~l~~~~~G 84 (114)
T 2kdi_A 45 IPPDQQRLIWA--------GKQLEDGRTLSDYNIQRESTLHLVLRLRG 84 (114)
T ss_dssp CCGGGEEEEET--------TEECCTTCBTTTTTCCSSCEEEEEECCCS
T ss_pred cChHHEEEEEC--------CEECCCCCcHHHCCCCCCCEEEEEEEcCC
Confidence 45799999864 66899999999999999995556666665
No 25
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=94.61 E-value=0.024 Score=42.59 Aligned_cols=40 Identities=25% Similarity=0.456 Sum_probs=30.7
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEcccC
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDLG 50 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kdlG 50 (273)
..|+||||... |+.|+|+++|++|++++++.+.+.++-.|
T Consensus 58 ip~~~qrLi~~--------Gk~L~D~~tL~~~~i~~g~~i~l~~rl~G 97 (98)
T 4hcn_B 58 IPPDQQRLIFA--------GKQLEDGRTLSDYNIQKESTLHLVLRLRG 97 (98)
T ss_dssp CCGGGCEEEET--------TEECCTTCBSGGGTCCTTEEEEEECBCSC
T ss_pred CChhHEEEEEC--------CEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 35799999854 67899999999999999985555555443
No 26
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=94.60 E-value=0.016 Score=44.54 Aligned_cols=30 Identities=17% Similarity=-0.047 Sum_probs=26.5
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCC
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSG 40 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~ 40 (273)
..|+||||... |+.|+|+++|+||++++++
T Consensus 64 ip~~qQrLi~~--------Gk~L~D~~TL~dygI~~gs 93 (100)
T 1uh6_A 64 TRWNKIVLKKW--------YTIFKDHVSLGDYEIHDGM 93 (100)
T ss_dssp CCGGGCEEEET--------TEECCSSCBHHHHTCCTTE
T ss_pred CCHHHEEEEEC--------CEECCCCCCHHHcCCCCCC
Confidence 45799999864 7789999999999999998
No 27
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=94.58 E-value=0.022 Score=41.36 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=28.7
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEc
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFK 47 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~k 47 (273)
..|++|||... |+.|+|+++|++|++++++.+.+.++
T Consensus 48 ip~~~qrL~~~--------G~~L~d~~tL~~~~i~~~~~i~l~~r 84 (88)
T 3dbh_I 48 IPPQQQRLIYS--------GKQMNDEKTAADYKILGGSVLHLVLR 84 (88)
T ss_dssp CCGGGCCEEET--------TEECCTTSBGGGGTCCTTCEEEECCC
T ss_pred cCHHHEEEEEC--------CeECCCCCcHHHcCCCCCCEEEEEEe
Confidence 35789999854 67899999999999999994444434
No 28
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=94.57 E-value=0.029 Score=41.39 Aligned_cols=32 Identities=25% Similarity=0.466 Sum_probs=26.6
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCce
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNL 42 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~ 42 (273)
..|+||||... |+.|+|+++|++||+++|+.+
T Consensus 53 ip~~~qrL~~~--------Gk~L~D~~tL~~~gi~~g~~i 84 (91)
T 3v6c_B 53 IPPDQQRLIFA--------GKQLEDGRTLSDYNIQKESTL 84 (91)
T ss_dssp CCGGGCEEEET--------TEECCTTCBTGGGTCCTTCEE
T ss_pred CChhhEEEEEC--------CeECCCcCcHHHCCCCCCCEE
Confidence 35799999864 668999999999999999933
No 29
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.51 E-value=0.028 Score=39.99 Aligned_cols=35 Identities=34% Similarity=0.423 Sum_probs=27.7
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEE
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVV 45 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~ 45 (273)
..|+||||.+. |+.|+|+++|++||+++|+.+.+.
T Consensus 43 i~~~~qrL~~~--------gk~L~d~~tL~~~~i~~g~~i~l~ 77 (81)
T 2dzi_A 43 VPVRQQRLLFK--------GKALADGKRLSDYSIGPNSKLNLV 77 (81)
T ss_dssp CCTTTCEEEET--------TEECCTTSBGGGGTCCSSBCCEEE
T ss_pred cCHHHEEEEEC--------CeECCCCCcHHHcCCCCCCEEEEE
Confidence 45799999864 668999999999999999844333
No 30
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=94.51 E-value=0.026 Score=41.40 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=28.0
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEE
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVF 46 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~ 46 (273)
..|+||||.. +|+.|+|+++|++||+++|+ ++.+
T Consensus 47 ip~~~qrL~~--------~Gk~L~D~~tL~~~gi~~g~--~l~l 80 (85)
T 2kd0_A 47 VLPRGQKLIF--------KGKVLVETSTLKQSDVGSGA--KLML 80 (85)
T ss_dssp CCTTTCEEEE--------TTEECCTTCBTTTTTCCTTE--EEEE
T ss_pred cChHHEEEEE--------CCeECCCcCCHHHCCCCCCC--EEEE
Confidence 4579999985 36689999999999999998 6554
No 31
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=94.51 E-value=0.022 Score=40.63 Aligned_cols=40 Identities=13% Similarity=0.110 Sum_probs=31.1
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEcccC
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDLG 50 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kdlG 50 (273)
..|++|||... |+.|+|++++++|++++++.+.+.++-.|
T Consensus 39 i~~~~qrL~~~--------G~~L~d~~tl~~~~i~~~~~i~l~~~~~G 78 (79)
T 2uyz_B 39 VPMNSLRFLFE--------GQRIADNHTPKELGMEEEDVIEVYQEQTG 78 (79)
T ss_dssp CCGGGEEEEET--------TEECCTTCCHHHHTCCTTEEEEEEECCCC
T ss_pred CCcccEEEEEC--------CEEeCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 35789999864 67899999999999999995555555444
No 32
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=94.49 E-value=0.025 Score=41.52 Aligned_cols=32 Identities=13% Similarity=0.129 Sum_probs=26.6
Q ss_pred CCccceeEecCCCCCCCCCccc-cCcccccccccCCCCCce
Q 043518 3 FYPSRQRLTLPLPPGSKQRATA-LDYKKSLKEYSDGNSGNL 42 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~-l~~~k~l~~~~~~~~~~~ 42 (273)
..|+||||... |+. |+|+++|++||+++++.+
T Consensus 46 ip~~~QrLi~~--------Gk~lL~D~~tL~~y~I~~gs~i 78 (84)
T 2kk8_A 46 IPVSKQTLIVD--------GIVILREDLTVEQCQIVPTSDI 78 (84)
T ss_dssp CCGGGEEEEET--------TEECCCSSSBHHHHTCCTTSCE
T ss_pred cChHHEEEEEC--------CEEecCCcCCHHHcCCCCCCEE
Confidence 35799999864 667 899999999999999843
No 33
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=94.45 E-value=0.032 Score=41.35 Aligned_cols=45 Identities=22% Similarity=0.197 Sum_probs=33.6
Q ss_pred CccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEcccCC
Q 043518 4 YPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDLGP 51 (273)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kdlG~ 51 (273)
.|++|||-+..+.+. .-++.++|+++|.+|++.+|+ +|.+-|.-|
T Consensus 41 p~~~QrLi~~~~~~~-~~g~~l~d~~tL~~Y~i~~g~--~ihlvd~~P 85 (86)
T 4b6w_A 41 PPEYMQLQLIDDRGI-TIEKNMANDKQLGYYQCRDEF--VIHVVDLQP 85 (86)
T ss_dssp CGGGEEEEEECTTSC-EEESSCCTTSBGGGGTCCTTC--EEEEEECCC
T ss_pred CHHHEEEEEecCCCC-ceeeEcCCCCCHHHCCCCCCC--EEEEEeCCC
Confidence 478999877522221 236678999999999999999 887777655
No 34
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=94.31 E-value=0.024 Score=42.44 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=30.5
Q ss_pred CCccceeEecCCCCCCCCCccccCcc-cccccccCCCCCceEEEEcccC
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYK-KSLKEYSDGNSGNLTVVFKDLG 50 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~-k~l~~~~~~~~~~~~~~~kdlG 50 (273)
..|+||||... |+.|+|+ ++|++||+++++.+.+.++-.|
T Consensus 50 ip~~~QrLi~~--------Gk~L~D~~~tL~~ygI~~gstl~lv~r~~g 90 (94)
T 2kan_A 50 TPIKRMQLYYS--------GIELADDYRNLNEYGITEFSEIVVFLKSIN 90 (94)
T ss_dssp SCTTTEEEEET--------TEEECCTTSBHHHHTCCTTEEEEEEECCCS
T ss_pred cCHHHEEEEEC--------CEECCCCcccHHHCCCCCCCEEEEEEeCCC
Confidence 45799999864 6689888 9999999999985545554443
No 35
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=94.18 E-value=0.032 Score=41.38 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=32.5
Q ss_pred CCCccceeEecCCCCCCCCCccccCcccccccc--cCCCCCceEEEEcccCC
Q 043518 2 KFYPSRQRLTLPLPPGSKQRATALDYKKSLKEY--SDGNSGNLTVVFKDLGP 51 (273)
Q Consensus 2 ~~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~--~~~~~~~~~~~~kdlG~ 51 (273)
...|+||||... |+.|+|+++|++| ++++++.+.+.++-.|.
T Consensus 46 ~i~~~~QrLi~~--------Gk~L~D~~tL~~~~~~i~~~~~i~lv~~~~gg 89 (93)
T 1wgd_A 46 RPRPEDQRLIYS--------GKLLLDHQCLRDLLPKQEKRHVLHLVCNVKSG 89 (93)
T ss_dssp CCCTTTCEEEET--------TEECCSSSCHHHHSCSSSCSEEEEEECCCCCC
T ss_pred CCChHHeEEEEC--------CEECcCcCCHHHHhcCCCCCCEEEEEeCCCCC
Confidence 356899999854 7789999999999 99999855555555553
No 36
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=94.12 E-value=0.049 Score=41.82 Aligned_cols=42 Identities=24% Similarity=0.271 Sum_probs=32.9
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEcccCCC
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDLGPQ 52 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kdlG~q 52 (273)
..|+||+|.+. ++.|+|+++|++|++++++.+.+.++-.|..
T Consensus 67 ip~~~QrL~~~--------Gk~L~D~~tL~~y~I~~g~~l~l~~r~~GGk 108 (111)
T 1we6_A 67 IPANKQKLSGK--------AGFLKDNMSLAHYNVGAGEILTLSLRERSGP 108 (111)
T ss_dssp CCTTTSEEECS--------SSBCCTTSBTTTTTCSSSCEEEEECSSCCSS
T ss_pred CCHHHeEEEEC--------CEECCCCCcHHHCCCCCCCEEEEEEEcCCCC
Confidence 45799999864 5689999999999999999665666666643
No 37
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=94.07 E-value=0.039 Score=41.82 Aligned_cols=34 Identities=15% Similarity=0.072 Sum_probs=27.9
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEE
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVF 46 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~ 46 (273)
..|+||||.+. |+.|+|+++|++||+++|+ +|.+
T Consensus 60 ip~~~qrLi~~--------Gk~L~D~~tL~~~gI~~g~--~I~l 93 (101)
T 2klc_A 60 SHTDQLVLIFA--------GKILKDQDTLSQHGIHDGL--TVHL 93 (101)
T ss_dssp CCGGGEEEEET--------TEEECTTCCTGGGTCCTTC--EEEE
T ss_pred cChhhEEEEEC--------CEECCCcCcHHHcCCCCCC--EEEE
Confidence 45799999864 6689999999999999998 5544
No 38
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=94.00 E-value=0.041 Score=41.68 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=29.4
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEcc
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKD 48 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kd 48 (273)
..|+||||.+. |+.|+|+++|++||+++++.+.+..+-
T Consensus 57 ip~~~QrLi~~--------Gk~L~D~~tL~~ygI~~gstI~l~~r~ 94 (100)
T 1yqb_A 57 AHPDQLVLIFA--------GKILKDPDSLAQCGVRDGLTVHLVIKR 94 (100)
T ss_dssp CCGGGEEEEET--------TEECCTTSBHHHHTCCTTCEEEEEECC
T ss_pred cChhhEEEEEC--------CEECCCcCcHHHCCCCCCCEEEEEEcC
Confidence 35799999864 668999999999999999844444443
No 39
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=93.99 E-value=0.04 Score=41.72 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=28.1
Q ss_pred CccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEE
Q 043518 4 YPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVV 45 (273)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~ 45 (273)
.|++|||... ++.|+|+++|+||++.+|+++.||
T Consensus 58 p~~qQrLif~--------Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 58 QPNKIVLQKG--------GSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp CGGGEEEEET--------TEECCTTSBTGGGTCCTTCEEEEE
T ss_pred CHHHEEEEeC--------CEEccCcCCHHHcCCCCCCEEEEE
Confidence 4789999854 678999999999999999955554
No 40
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.93 E-value=0.04 Score=41.84 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=29.3
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEcc
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKD 48 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kd 48 (273)
..|+||||... |+.|+|+++|+++|+++|+ ++.+-.
T Consensus 63 ip~~~QrLi~~--------Gk~L~D~~tL~~~gI~~g~--tI~lv~ 98 (101)
T 3m63_B 63 IPVANQRLIYS--------GKILKDDQTVESYHIQDGH--SVHLVK 98 (101)
T ss_dssp CCSTTCCEEET--------TEECCTTSBTTTTTCCTTE--EEEECC
T ss_pred cChHHEEEEEC--------CEECCCcCcHHHCCCCCCC--EEEEEe
Confidence 35799999854 6789999999999999998 666543
No 41
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=93.83 E-value=0.045 Score=43.28 Aligned_cols=40 Identities=13% Similarity=0.044 Sum_probs=29.5
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEcccC
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDLG 50 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kdlG 50 (273)
..++||||.+. |+.|+|+++|++||+++++.+.+..+..|
T Consensus 67 ip~~~QrLi~~--------Gk~L~D~~tL~dygI~~gstI~lv~~~~g 106 (125)
T 1j8c_A 67 SQTDQLVLIFA--------GKILKDQDTLIQHGIHDGLTVHLVIKRDP 106 (125)
T ss_dssp SCSSSEEEEET--------TEEESTTSCGGGTTCSSSEEEEEEEC---
T ss_pred cCcceEEEEEC--------CEEcCCCCCHHHcCCCCCCEEEEEeccCC
Confidence 35799999864 66899999999999999985555555554
No 42
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=93.79 E-value=0.062 Score=41.28 Aligned_cols=40 Identities=25% Similarity=0.456 Sum_probs=30.5
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEcccC
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDLG 50 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kdlG 50 (273)
..|+||||... ++.|+|+++|+++++++++.+.+.++-.|
T Consensus 71 ip~~~qrLi~~--------Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 2ojr_A 71 IPPDQQRLIFA--------GKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp CCTTTEEEEET--------TEECCSSCBTTTTTCCTTCEEEEEECCCC
T ss_pred cCcccEEEEEC--------CEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 35799999864 66899999999999999995555544433
No 43
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.61 E-value=0.052 Score=41.49 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=28.2
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEE
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVF 46 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~ 46 (273)
..|+||||-.. |+.|+|+++|++||+++|+.+.+.+
T Consensus 37 ip~~~QrLi~~--------Gk~L~D~~tL~~~~i~~g~~i~lv~ 72 (106)
T 3m62_B 37 CEESQIKLIYS--------GKVLQDSKTVSECGLKDGDQVVFMV 72 (106)
T ss_dssp SCGGGCEEEET--------TEECCTTSBTTTTTCCTTCEEEEEC
T ss_pred CChhhEEEEEC--------CEECCCcCCHHHcCCCCCCEEEEEE
Confidence 35799999854 6789999999999999999443443
No 44
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=93.55 E-value=0.058 Score=40.96 Aligned_cols=36 Identities=19% Similarity=0.144 Sum_probs=28.7
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccC-CCCCceEEEE
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSD-GNSGNLTVVF 46 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~-~~~~~~~~~~ 46 (273)
..|+||||-.. |+.|+|+++|++|++ ++|+.+.+.+
T Consensus 58 ip~~~QrLi~~--------Gk~L~D~~tL~dy~I~~~g~ti~lmv 94 (98)
T 4a20_A 58 SHISEIKLLLK--------GKVLHDNLFLSDLKVTPANSTITVMI 94 (98)
T ss_dssp SCGGGEEEEET--------TEEECTTCBGGGSCCBTTBCEEEEEE
T ss_pred CChhhEEEEEC--------CEECcCcCCHHHcCcCCCCCEEEEEE
Confidence 45799999864 778999999999999 9998444443
No 45
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=93.54 E-value=0.07 Score=41.06 Aligned_cols=40 Identities=25% Similarity=0.456 Sum_probs=31.2
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEcccC
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDLG 50 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kdlG 50 (273)
..|+||||... |+.|+|+++|++|++++++.+.+.++-.|
T Consensus 71 ip~~~QrLi~~--------Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G 110 (111)
T 3vdz_A 71 IPPDQQRLIFA--------GKQLEDGRTLSDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp CCGGGEEEEET--------TEECCTTSBTTTTTCCTTCEEEEEECCCC
T ss_pred CChHHEEEEEC--------CEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 35789999864 67899999999999999995555555443
No 46
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=93.41 E-value=0.049 Score=42.17 Aligned_cols=41 Identities=15% Similarity=0.226 Sum_probs=32.5
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEcccCC
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDLGP 51 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kdlG~ 51 (273)
..|+||||.+. |+.|+|+++|++|++++++.+.+.++-.|-
T Consensus 71 ip~~~QrL~~~--------Gk~L~D~~tL~~y~i~~g~~i~lv~rl~GG 111 (115)
T 1we7_A 71 MPAGKQKLQYE--------GIFIKDSNSLAYYNMASGAVIHLALKERSG 111 (115)
T ss_dssp CCTTTEEEEET--------TEEECTTSBHHHHTCCSSCEEEEEECCCSC
T ss_pred CChHHEEEEEC--------CEECCCCCCHHHCCCCCCCEEEEEEEcCCC
Confidence 45799999864 567999999999999999966666666553
No 47
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.35 E-value=0.049 Score=42.99 Aligned_cols=39 Identities=13% Similarity=0.092 Sum_probs=32.2
Q ss_pred ccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEcccCC
Q 043518 5 PSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDLGP 51 (273)
Q Consensus 5 ~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kdlG~ 51 (273)
++||||.+. |+.|+|+.+|++||+++|..+.+..+..-|
T Consensus 54 ~e~qrLIy~--------GKiLKD~eTL~~~gIk~g~TIhLvi~s~~p 92 (118)
T 2daf_A 54 HSVLQIRYS--------GKILKNNETLVQHGVKPQEIVQVEIFSTNP 92 (118)
T ss_dssp TTTEEEEET--------TEEECSSCCHHHHSCCSSCEEEEEEEESCT
T ss_pred hHHEEEEEC--------CeEcCCcchHHHcCCCCCCEEEEEEecCCC
Confidence 589999875 778999999999999999966677666544
No 48
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=93.33 E-value=0.05 Score=40.36 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=26.6
Q ss_pred ccceeEecCCCCCCCCCccccCcc-cccccccCCCCCceEEEE
Q 043518 5 PSRQRLTLPLPPGSKQRATALDYK-KSLKEYSDGNSGNLTVVF 46 (273)
Q Consensus 5 ~~r~~~~~~~~~~~~~~~~~l~~~-k~l~~~~~~~~~~~~~~~ 46 (273)
|+||||.+. |+.|+|+ ++|++||+++++ +|.+
T Consensus 42 ~~~qrLi~~--------Gk~L~D~~~tL~~y~i~~g~--~i~l 74 (95)
T 1wia_A 42 ESQMKLIYQ--------GRLLQDPARTLSSLNITNNC--VIHC 74 (95)
T ss_dssp TTTCEEEET--------TEECCCSSCBTTTTTCCTTE--EEEE
T ss_pred cCcEEEEEC--------CEEccCCcCCHHHcCCCCCC--EEEE
Confidence 789999864 6789888 999999999998 5554
No 49
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=93.21 E-value=0.066 Score=40.70 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=30.6
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEcccC
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDLG 50 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kdlG 50 (273)
..++||||.+. ++.|+|+++|++|++++++.+.+.++--|
T Consensus 52 ip~~~qrLi~~--------Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~ 91 (106)
T 1wx7_A 52 AHPDQLVLIFA--------GKILKDPDSLAQCGVRDGLTVHLVIKRQH 91 (106)
T ss_dssp CCTTTEEEEET--------TEECCTTSCHHHHTCCTTEEEEEEECCCC
T ss_pred cChhhEEEEEC--------CEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 35799999864 66899999999999999985445554444
No 50
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=93.20 E-value=0.043 Score=40.59 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=28.0
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEE
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVF 46 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~ 46 (273)
..|+||||... ..+|+.|+|+++|++|++++++ +|.+
T Consensus 43 ip~~~QkLi~~-----k~~Gk~L~D~~~L~~~~i~~g~--~l~l 79 (90)
T 1v5t_A 43 VLPERQKLLGL-----KVKGKPAENDVKLGALKLKPNT--KIMM 79 (90)
T ss_dssp CCTTTCEEESC-----EETTEECCTTSBHHHHTCCTTE--EEEE
T ss_pred cCHHHeEEEee-----ccCCcCcCCCCCHHHcCCCCCC--EEEE
Confidence 45899999721 0246789999999999999998 5443
No 51
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=92.92 E-value=0.046 Score=41.38 Aligned_cols=35 Identities=17% Similarity=0.140 Sum_probs=27.5
Q ss_pred CCccceeEecCCCCCCCCCccccCcc-cccccccCCCCCceEEEEc
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYK-KSLKEYSDGNSGNLTVVFK 47 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~-k~l~~~~~~~~~~~~~~~k 47 (273)
..|+||||.+. ++.|+|+ ++|++|++++++ +|.+.
T Consensus 47 ip~~~qrL~~~--------gk~L~D~~~tL~~ygI~~g~--~l~l~ 82 (102)
T 1v5o_A 47 VPAEEAQIVYM--------EQLLTDDHCSLGSYGLKDGD--MVVLL 82 (102)
T ss_dssp CCGGGBCEEET--------TEEECCSSSBHHHHTCCTTE--EEEEC
T ss_pred cChHHeEEEEC--------CEECCCCcccHHHCCCCCCC--EEEEE
Confidence 45799999864 5678766 799999999998 66554
No 52
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=92.89 E-value=0.034 Score=41.36 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=29.0
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEccc
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDL 49 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kdl 49 (273)
..|+||||.+. ++.|+|+++|++|++++++.+.+.++-.
T Consensus 52 ip~~~qrL~~~--------Gk~L~D~~tL~~~gi~~g~~i~l~~~~~ 90 (96)
T 1wx8_A 52 CNADRLVLIFT--------GKILRDQDILSQRGILDGSTVHVVVRSH 90 (96)
T ss_dssp SCTTTBCCEET--------TEECCTTSCHHHHTCCTTEEEECCBCCS
T ss_pred CCHHHEEEEEC--------CEECCCcCCHHHCCCCCCCEEEEEEeCC
Confidence 45789999864 6689999999999999998333333433
No 53
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=92.77 E-value=0.061 Score=40.98 Aligned_cols=34 Identities=21% Similarity=0.165 Sum_probs=28.1
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEE
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVF 46 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~ 46 (273)
..|+||||.+. |+.|+|+++|++||+++|+ +|.+
T Consensus 59 ip~~~qrLi~~--------Gk~L~D~~tL~~ygI~~g~--ti~l 92 (106)
T 1ttn_A 59 VEPGSQRWFFS--------GRPLTDKMKFEELKIPKDY--VVQV 92 (106)
T ss_dssp CCSTTCEEEET--------TEECCTTSHHHHCCCSSSC--EEEE
T ss_pred cCcccEEEEEC--------CEECCCCCcHHHcCCCCCC--EEEE
Confidence 45799999864 6689999999999999999 5554
No 54
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=92.70 E-value=0.078 Score=39.71 Aligned_cols=40 Identities=13% Similarity=0.110 Sum_probs=31.4
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEcccC
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDLG 50 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kdlG 50 (273)
..|++|||... |+.|++++++++|++++++.+.+.++-.|
T Consensus 57 ip~~~qrLif~--------Gk~L~d~~tl~dy~i~~g~~I~l~~~~~G 96 (97)
T 1wyw_B 57 VPMNSLRFLFE--------GQRIADNHTPKELGMEEEDVIEVYQEQTG 96 (97)
T ss_dssp CCGGGEEEEET--------TEECCTTCCHHHHTCCTTCEEEEEESSSC
T ss_pred CChhhEEEEEC--------CeEcCCCCCHHHCCCCCCCEEEEEEecCC
Confidence 34789999865 67899999999999999996556655444
No 55
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=92.68 E-value=0.11 Score=43.12 Aligned_cols=40 Identities=25% Similarity=0.456 Sum_probs=32.2
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEcccC
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDLG 50 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kdlG 50 (273)
..|+||||... |+.|+|+++|++|++++++.+.+.++-.|
T Consensus 36 ip~~~QrLi~~--------Gk~L~D~~tL~~y~I~~gstI~Lvlrl~G 75 (169)
T 3l0w_B 36 IPPDQQRLIFA--------GKQLEDGRTLSDYNIQKESTLHLVLRLRG 75 (169)
T ss_dssp CCTTTEEEEET--------TEECCTTSBGGGGTCCTTCEEEEEECCCC
T ss_pred cCHHHEEEEEC--------CccccCcCcHHHcCCCCCCEEEEEEEecc
Confidence 45799999854 67899999999999999996666666555
No 56
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=91.84 E-value=0.021 Score=40.29 Aligned_cols=33 Identities=6% Similarity=0.111 Sum_probs=26.0
Q ss_pred CccceeEecCCCCCCCCCccccCcccccccccCCCCCceEE
Q 043518 4 YPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTV 44 (273)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~ 44 (273)
.|++|+|... |+.|+|+++|++||+++|+.+.+
T Consensus 37 ~~~~qrL~~~--------gk~L~d~~tL~~~~i~~g~~i~l 69 (76)
T 3b1l_X 37 PADQLRVIFA--------GKELPNHLTVQNCDLEQQSIVHI 69 (76)
Confidence 4688998753 66899999999999999983333
No 57
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=92.44 E-value=0.099 Score=37.97 Aligned_cols=29 Identities=28% Similarity=0.397 Sum_probs=24.5
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCC
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSG 40 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~ 40 (273)
..|+||||.. +|+.|+|+++|++||+ +|+
T Consensus 53 ip~~~qrLi~--------~Gk~L~D~~tL~~~~i-~g~ 81 (88)
T 4eew_A 53 IPSEKQRLIY--------QGRVLQDDKKLQEYNV-GGK 81 (88)
T ss_dssp CCGGGEEEEE--------TTEECCTTSBGGGGTC-TTE
T ss_pred CCHHHEEEEE--------CCEECCCCCcHHHcCC-CCc
Confidence 4579999985 4678999999999999 787
No 58
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=92.29 E-value=0.13 Score=37.55 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=28.6
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEcc
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKD 48 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kd 48 (273)
..|++|||.. +|+.|+|+++|++|++ +++.+.+.++.
T Consensus 41 ip~~~qrLi~--------~Gk~L~d~~tL~~~~i-~g~~i~l~~~~ 77 (90)
T 4dwf_A 41 IPSEKQRLIY--------QGRVLQDDKKLQEYNV-GGKVIHLVERA 77 (90)
T ss_dssp CCGGGEEEEE--------TTEECCTTSBGGGGTC-TTEEEEEEECC
T ss_pred CCHHHEEEEE--------CCeECCCCCCHHHcCC-CCcEEEEEecC
Confidence 3579999985 4678999999999999 78745555554
No 59
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=91.94 E-value=0.11 Score=41.04 Aligned_cols=38 Identities=26% Similarity=0.282 Sum_probs=29.6
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCC-------CCceEEEEcc
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGN-------SGNLTVVFKD 48 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~-------~~~~~~~~kd 48 (273)
..|++|||... |+.|+|+++|+|||+++ ++++-|.++.
T Consensus 37 iPp~qQrLI~~--------Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr~ 81 (118)
T 4ajy_B 37 RPPDEQRLYKD--------DQLLDDGKTLGECGFTSQTARPQAPATVGLAFRA 81 (118)
T ss_dssp CCGGGEEEEET--------TEECCTTSBTTTTTCCGGGSBTTBCEEEEEEECC
T ss_pred CCHHHeEEEeC--------CeECCCcCCHHHcCCCcCcccCCCCCEEEEEEec
Confidence 45799999854 67899999999999998 7644455553
No 60
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=91.89 E-value=0.1 Score=39.55 Aligned_cols=40 Identities=18% Similarity=0.095 Sum_probs=29.8
Q ss_pred CccceeEecCCCCCCCCCcc---c-cCcccccccccCCCCCceEEEEcccC
Q 043518 4 YPSRQRLTLPLPPGSKQRAT---A-LDYKKSLKEYSDGNSGNLTVVFKDLG 50 (273)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~~~---~-l~~~k~l~~~~~~~~~~~~~~~kdlG 50 (273)
.|++|||.+. | ..++ . ++|+++|++|++.+|+ +|.+-|.-
T Consensus 53 p~~~QrLi~~---g--~~g~~~~~L~~D~~tL~~Y~I~~g~--~Ihlvd~~ 96 (97)
T 2kj6_A 53 SVNSMALELY---D--DSGSKVAVLSDDSRPLGFFSPFDGF--RLHIIDLD 96 (97)
T ss_dssp CTTSEEEEEE---C--SSSCBCCCSSGGGSCHHHHCCCSCC--EEEEEECC
T ss_pred CHHHeEEEEe---c--CCCcccceecCCcCCHHHCCCCCCC--EEEEEeCC
Confidence 4799999875 1 1222 2 4899999999999999 88777753
No 61
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=91.81 E-value=0.081 Score=40.51 Aligned_cols=30 Identities=13% Similarity=0.196 Sum_probs=25.6
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCC
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSG 40 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~ 40 (273)
..|++|||-. .|+.|+|+++|+||++++++
T Consensus 55 ip~~qQrLI~--------~GKiL~D~~TL~~y~I~~gs 84 (100)
T 1wju_A 55 LQENYIKIVI--------NKKQLQLGKTLEEQGVAHNV 84 (100)
T ss_dssp CCSTTCEEEE--------TTEECCTTSBHHHHTCCSSE
T ss_pred cCHHHeEEEe--------CCeECCCCCcHHHcCCCCCC
Confidence 3478899874 47789999999999999998
No 62
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=91.66 E-value=0.16 Score=39.22 Aligned_cols=36 Identities=14% Similarity=0.143 Sum_probs=27.4
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccC-CCCCceEEEE
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSD-GNSGNLTVVF 46 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~-~~~~~~~~~~ 46 (273)
+.|++||+... ++.++|+++|.+||+ .+|+++-|++
T Consensus 62 ipp~~QRli~g--------gkll~D~~TL~~ygI~~~G~t~hL~l 98 (105)
T 4dbg_A 62 FPPVLQQWVIG--------QRLARDQETLHSHGVRQNGDSAYLYL 98 (105)
T ss_dssp CCGGGEEEEET--------TEEECTTCBTGGGTCCSTTCEEEEEE
T ss_pred CCHHHEEEecc--------CeEccCcCcHHHcCCCCCCCEEEEEE
Confidence 56899998754 446799999999999 5888444544
No 63
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=91.36 E-value=0.09 Score=39.47 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=26.7
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEE
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVF 46 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~ 46 (273)
..|+||||.. +|+.|+|+ +|++|++++++ +|.+
T Consensus 43 ip~~~QkLi~--------~Gk~L~D~-tL~~~~I~~g~--~i~l 75 (96)
T 1wgg_A 43 VQPARQKVMV--------KGGTLKDD-DWGNIKMKNGM--TVLM 75 (96)
T ss_dssp CCTTTSCCEE--------TTEECCSS-CCCSCCCCSSC--EEEC
T ss_pred cCHHHeEEEE--------CCcCCCCC-CHHHCCCCCCC--EEEE
Confidence 3579999985 46689888 99999999998 6654
No 64
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=91.17 E-value=0.1 Score=38.35 Aligned_cols=34 Identities=18% Similarity=0.181 Sum_probs=26.9
Q ss_pred CCccceeEecCCCCCCCCCccccCc-ccccccccCCCCCceEEEE
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDY-KKSLKEYSDGNSGNLTVVF 46 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~-~k~l~~~~~~~~~~~~~~~ 46 (273)
..|+||||... |+.|+| +++|++||+++++ +|.+
T Consensus 47 ip~~~qrL~~~--------Gk~L~D~~~~L~~~~i~~g~--~i~l 81 (92)
T 1wxv_A 47 VPQSFQKLIFK--------GKSLKEMETPLSALGIQDGC--RVML 81 (92)
T ss_dssp CCTTTCEEEET--------TEEECCSSSBHHHHTCCSSE--EEEE
T ss_pred cCHHHEEEEEC--------CeecCCCcccHHHCCCCCCC--EEEE
Confidence 45799999854 667876 7799999999998 6655
No 65
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=91.01 E-value=0.15 Score=38.84 Aligned_cols=36 Identities=14% Similarity=0.086 Sum_probs=28.0
Q ss_pred CCccc-eeEecCCCCCCCCCccccCcccccccccCCCCCceEEEE
Q 043518 3 FYPSR-QRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVF 46 (273)
Q Consensus 3 ~~~~r-~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~ 46 (273)
..|++ |||-. +|+.|+|+++|++|++++++.+.+..
T Consensus 62 ip~~~~qrLi~--------~Gk~L~D~~tL~~y~i~~g~~i~lv~ 98 (107)
T 1x1m_A 62 VPDPELIDLIY--------CGRKLKDDQTLDFYGIQPGSTVHVLR 98 (107)
T ss_dssp CCCSSSEEEEE--------TTEECCTTCBHHHHTCCTTCEEEEEE
T ss_pred CChhhcEEEEE--------CCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 45788 99975 46789999999999999998443433
No 66
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=90.99 E-value=0.15 Score=38.92 Aligned_cols=46 Identities=13% Similarity=0.003 Sum_probs=30.6
Q ss_pred CCccceeEecCCCC-CCCCCc---cc---cCcccccccccCCCCCceEEEEcccC
Q 043518 3 FYPSRQRLTLPLPP-GSKQRA---TA---LDYKKSLKEYSDGNSGNLTVVFKDLG 50 (273)
Q Consensus 3 ~~~~r~~~~~~~~~-~~~~~~---~~---l~~~k~l~~~~~~~~~~~~~~~kdlG 50 (273)
..|++|||.+.... +....+ .. ++++++|++||+++|+ +|++.+..
T Consensus 43 ip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G~--~L~l~~~~ 95 (107)
T 1wf9_A 43 IPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGS--MVYLAYEG 95 (107)
T ss_dssp CCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTC--EEECCCSS
T ss_pred cCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCCC--EEEEEeCC
Confidence 35789999875110 000000 12 5899999999999999 89887763
No 67
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=90.85 E-value=0.27 Score=36.63 Aligned_cols=46 Identities=22% Similarity=0.176 Sum_probs=32.9
Q ss_pred CccceeEecCCCCCCCCCcccc-CcccccccccCCCCCceEEEEcccCCC
Q 043518 4 YPSRQRLTLPLPPGSKQRATAL-DYKKSLKEYSDGNSGNLTVVFKDLGPQ 52 (273)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~~~~l-~~~k~l~~~~~~~~~~~~~~~kdlG~q 52 (273)
.|++|+|.+..+.. +.....| +|+++|.+|++.+|+ +|.+.|-.|.
T Consensus 49 p~~~q~L~~~~~~~-~~~~~~L~~d~~~L~~y~i~~G~--~I~V~d~~p~ 95 (97)
T 1wjn_A 49 PVSELLLSYESSKM-PGREIELENDLQPLQFYSVENGD--CLLVRWSGPS 95 (97)
T ss_dssp CTTTCEEEEECTTS-CSCEEECCCSSSBSGGGTCCTTC--EEEEECCSSC
T ss_pred ChhHeEEEEEcCCC-CceeeccCCCcccHhhcCCCCCC--EEEEEecCCC
Confidence 47899988762211 1233445 788999999999999 8998886654
No 68
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=90.33 E-value=0.27 Score=38.85 Aligned_cols=38 Identities=24% Similarity=0.441 Sum_probs=29.0
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEcc
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKD 48 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kd 48 (273)
..|+||+|... |+.|+|+++|++||+++++.+.+..+.
T Consensus 36 ip~~~q~L~~~--------g~~L~d~~tL~~~~i~~~~~l~l~~~~ 73 (152)
T 3b08_A 36 IPPDQQRLIFA--------GKQLEDGRTLSDYNIQKESTLHLVLRL 73 (152)
T ss_dssp CCGGGEEEEET--------TEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred cChHHeEEEEC--------CeECcCcccHHHhccCCCCeeEEEeec
Confidence 35799999864 567899999999999999844444443
No 69
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=90.00 E-value=0.29 Score=39.45 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=29.9
Q ss_pred CCccceeEe-cCCCCCCCCCccccCcccccccccCCCCCceEEEEc
Q 043518 3 FYPSRQRLT-LPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFK 47 (273)
Q Consensus 3 ~~~~r~~~~-~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~k 47 (273)
..|+||||. .. +|+.|+|+++|++|++++++.+.+.++
T Consensus 38 ip~~~QrL~~~~-------~g~~L~d~~tL~~y~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 38 VHAFQQRLAVHP-------SGVALQDRVPLASQGLGPGSTVLLVVD 76 (159)
T ss_dssp CCGGGEEEEEET-------TCCBCCTTSCGGGGTCCTTCEEEEEEC
T ss_pred CCHHHEEEEEcC-------CCCCCCCCCCHHHcCCCCCCEEEEEcc
Confidence 457899998 52 356789999999999999985555555
No 70
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=89.99 E-value=0.14 Score=37.84 Aligned_cols=30 Identities=17% Similarity=0.078 Sum_probs=25.0
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccC-CCCC
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSD-GNSG 40 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~-~~~~ 40 (273)
..|++|||-. +|+.|+|+++|++|++ .+++
T Consensus 40 ip~~~QrLi~--------~Gk~L~D~~tL~~y~I~~~~s 70 (87)
T 2lxa_A 40 SHISEIKLLL--------KGKVLHDNLFLSDLKVTPANS 70 (87)
T ss_dssp SSSTTEEEEE--------TTEECCTTCBHHHHCCCGGGC
T ss_pred CChHHEEEEE--------CCEECcCcCCHHHcCCCCCCC
Confidence 3578999875 4778999999999999 5777
No 71
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=89.82 E-value=0.3 Score=39.98 Aligned_cols=38 Identities=24% Similarity=0.441 Sum_probs=29.5
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEcc
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKD 48 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kd 48 (273)
..|+||||... |+.|+|+++|++||+++++++.+.++-
T Consensus 56 ip~~~QrL~~~--------g~~L~d~~tL~~~~i~~~~~l~l~~~~ 93 (172)
T 3u30_A 56 IPPDQQRLIFA--------GKQLEDGRTLSDYNIQKESTLHLVLRL 93 (172)
T ss_dssp CCGGGEEEEET--------TEECCTTCBTGGGTCCTTCEEEEEECC
T ss_pred cChHHEEEEEC--------CccccccCCHhHcCCcccceeeeeecc
Confidence 45789999864 568999999999999999855444443
No 72
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=89.80 E-value=0.16 Score=39.94 Aligned_cols=37 Identities=27% Similarity=0.279 Sum_probs=29.2
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCC-------CCCceEEEEc
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDG-------NSGNLTVVFK 47 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~-------~~~~~~~~~k 47 (273)
..|++|||-.. |+.|+|+++|+|||+. +++++.+.++
T Consensus 37 IP~~qQrLi~~--------Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 37 RPPEEQRLYKD--------DQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CCGGGEEEEET--------TEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CCHHHeEEEEC--------CeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 34789999854 6789999999999999 4665556667
No 73
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=89.38 E-value=0.16 Score=38.20 Aligned_cols=40 Identities=8% Similarity=0.122 Sum_probs=28.3
Q ss_pred CccceeEecCCCCCCCCCcccc-CcccccccccCCCCCceEEEEcc
Q 043518 4 YPSRQRLTLPLPPGSKQRATAL-DYKKSLKEYSDGNSGNLTVVFKD 48 (273)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~~~~l-~~~k~l~~~~~~~~~~~~~~~kd 48 (273)
.|++|||.+.. .| ...+.| +|+++|.+|++.+|+ +|.+-|
T Consensus 54 P~~~QrL~~~~-~g--~~~~~L~~D~~tL~~Y~i~~gs--tihlvD 94 (95)
T 2kjr_A 54 CAGTMKVQVFK-GD--TCVSTMDNNDAQLGYYANSDGL--RLHVVD 94 (95)
T ss_dssp CTTTEEEEEEE-TT--EEEEECCCTTSBHHHHCCSSSC--EEEEEE
T ss_pred CHHHeEEEEec-CC--cccceeCCCCCCHhHCCcCCCC--EEEEEC
Confidence 47899988750 00 111134 899999999999999 877765
No 74
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.30 E-value=0.15 Score=38.85 Aligned_cols=40 Identities=20% Similarity=0.089 Sum_probs=28.6
Q ss_pred CccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEcccC
Q 043518 4 YPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDLG 50 (273)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kdlG 50 (273)
.|+||+|-.. +.++ |+|+++|++|++++|+++.+...|+-
T Consensus 45 pp~~QkLi~~------~~gk-L~D~~tLs~~~I~~gstL~lvl~~~~ 84 (100)
T 2dzm_A 45 PVSKMLLKGW------KTGD-VEDSTVLKSLHLPKNNSLYVLTPDLP 84 (100)
T ss_dssp CTTTCCEECC------SSSC-CCTTSBHHHHCCCSEEEEEECCSSSC
T ss_pred ChhHeEEEcc------CCCC-CCCcCCHHHcCCCCCCEEEEEecCCC
Confidence 4799998532 1233 78999999999999984444556654
No 75
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=87.71 E-value=0.26 Score=36.74 Aligned_cols=33 Identities=15% Similarity=0.296 Sum_probs=25.3
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEE
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVF 46 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~ 46 (273)
..|+||||.. +++.|++ ++|++|++++++ +|.+
T Consensus 52 ip~~~QrL~~--------~Gk~Ldd-~tL~~~~i~~g~--~i~l 84 (95)
T 1v86_A 52 LPPAMQKVMY--------KGLVPED-KTLREIKVTSGA--KIMV 84 (95)
T ss_dssp SCSTTCCCBS--------SSBCCSS-SBHHHHCCCTTE--EEEE
T ss_pred cCHHHeEEEE--------CCeeCCc-CcHHHCCCCCCC--EEEE
Confidence 3579999985 3556754 499999999998 6655
No 76
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=87.54 E-value=0.19 Score=38.13 Aligned_cols=31 Identities=23% Similarity=0.203 Sum_probs=25.7
Q ss_pred ccceeEecCCCCCCCCCccccCcccccccc--cCCCCCceEEE
Q 043518 5 PSRQRLTLPLPPGSKQRATALDYKKSLKEY--SDGNSGNLTVV 45 (273)
Q Consensus 5 ~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~--~~~~~~~~~~~ 45 (273)
|++|||-.. |+.|+|+++|++| ++++++ +|.
T Consensus 65 ~~~QrLIy~--------Gk~L~D~~tL~~y~~~I~~~~--tih 97 (99)
T 2kdb_A 65 TKDQRLVYS--------GRLLPDHLQLKDILRKQDEYH--MVH 97 (99)
T ss_dssp TTTCCEEET--------TEEECTTSBTHHHHTTTCSEE--EEE
T ss_pred hhhEEEEEC--------CEECCCCCCHHHHhcCCCCCC--EEE
Confidence 489998754 7789999999999 999887 554
No 77
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=87.37 E-value=0.11 Score=42.55 Aligned_cols=39 Identities=26% Similarity=0.459 Sum_probs=0.0
Q ss_pred CccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEcccC
Q 043518 4 YPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDLG 50 (273)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kdlG 50 (273)
.|++|||... |+.|+|+++|+++++++++.+.+.++-.|
T Consensus 37 p~~~QrLi~~--------Gk~L~D~~tL~dygI~~gstL~Lvlrl~G 75 (152)
T 3u5c_f 37 PPDQQRLIFA--------GKQLEDGRTLSDYNIQKESTLHLVLRLRG 75 (152)
T ss_dssp -----------------------------------------------
T ss_pred CHHHEEEEEC--------CEEccccCcHHHcCCCCCCEEEEEeeccC
Confidence 4688988753 66799999999999999985445544443
No 78
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=85.98 E-value=0.73 Score=36.42 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=28.8
Q ss_pred ccceeEecCCCCCCCCCccccCcccccccccCCCCCc--eEEEEcccCC
Q 043518 5 PSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGN--LTVVFKDLGP 51 (273)
Q Consensus 5 ~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~--~~~~~kdlG~ 51 (273)
|++|||-.. |+.|+|+++|++|++++++. +-+.++-.++
T Consensus 63 ~~~qrLIy~--------GK~LeD~~TL~~y~I~~~~~~tlhlv~r~~~~ 103 (125)
T 2gow_A 63 PNILRLIYQ--------GRFLHGNVTLGALKLPFGKTTVMHLVARETLP 103 (125)
T ss_dssp GGGEEEESS--------SSEEESSCBTGGGCCCTTSEEEEEEEECSCCS
T ss_pred hHHEEEEEC--------CcCCCCCCcHHHcCCCCCCceEEEEEecCCCC
Confidence 689998754 77899999999999987763 2344454443
No 79
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=85.25 E-value=0.66 Score=36.22 Aligned_cols=40 Identities=18% Similarity=0.106 Sum_probs=28.5
Q ss_pred CccceeEecCCCCCCCCCccccCcccccccccCCCCCceE--EEEcccCC
Q 043518 4 YPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLT--VVFKDLGP 51 (273)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~--~~~kdlG~ 51 (273)
.|++|||-.. |+.|+|+++|++|++..++..+ +.++-.++
T Consensus 61 p~~qqrLIy~--------GK~LeD~~TL~~y~I~~~~~~tlhLvlr~~~~ 102 (116)
T 1wgh_A 61 SPNILRLIYQ--------GRFLHGNVTLGALKLPFGKTTVMHLVARETLP 102 (116)
T ss_dssp CTTTEEEEET--------TEEECSSCBTTTTTCCSSCEEEEEEEECSSCS
T ss_pred ChHHEEEEEC--------CcCCCCCCcHHHcCCCCCCceEEEEEccCCCC
Confidence 3789998764 7789999999999997665223 44444433
No 80
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=84.90 E-value=0.87 Score=42.43 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=27.3
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCce
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNL 42 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~ 42 (273)
+.++||||.. +|+.|+|+++|++|++++++.+
T Consensus 46 ip~~~QrLiy--------~GK~L~D~~tL~dygI~~gstI 77 (368)
T 1oqy_A 46 FPVAGQKLIY--------AGKILSDDVPIRDYRIDEKNFV 77 (368)
T ss_dssp CCSTEEEEES--------SSSEECSSSBTTTTCCCTTSCE
T ss_pred CChhheEEEE--------CCeecCCcCCHHHcCCCCCCEE
Confidence 4579999985 4778999999999999999854
No 81
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=84.23 E-value=0.96 Score=35.90 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=23.3
Q ss_pred cceeEecCCCCCCCCCccccCcccccccccCCCCC
Q 043518 6 SRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSG 40 (273)
Q Consensus 6 ~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~ 40 (273)
++|||-.. |+.|+|+++|++|++.+++
T Consensus 63 ~qQrLIy~--------GK~LeD~~TLsdy~I~~~~ 89 (126)
T 1se9_A 63 KEVKLISA--------GKVLENSKTVKDYRSPVSN 89 (126)
T ss_dssp GGEEEEET--------TEECCTTSBGGGGSCCTTS
T ss_pred hhEEEEEC--------CeECcCCCcHHHcCCCcCC
Confidence 79998754 7789999999999999873
No 82
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=80.38 E-value=1 Score=41.14 Aligned_cols=35 Identities=14% Similarity=0.098 Sum_probs=25.5
Q ss_pred CccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEE
Q 043518 4 YPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVV 45 (273)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~ 45 (273)
.|+||+|-.. .-+|+.|+|+.+|+++|+++|+ ++.
T Consensus 41 pp~~QkLi~~-----k~~Gk~l~D~~~L~~~~ik~g~--~l~ 75 (320)
T 3shq_A 41 RPERQKLLNL-----KYKGKTAADNVKISALELKPNF--KLM 75 (320)
T ss_dssp CGGGCEETTC-----BSSSSBCCTTSBTTSSCCC--C--EEE
T ss_pred CHHHeEEeec-----ccCCcccCccccHHHcCCCCCC--EEE
Confidence 4799999632 0257789999999999999998 544
No 83
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=80.15 E-value=0.44 Score=36.55 Aligned_cols=30 Identities=30% Similarity=0.436 Sum_probs=22.3
Q ss_pred ceeEecCCCCCCCCCcccc-CcccccccccCCCCCceEEEE
Q 043518 7 RQRLTLPLPPGSKQRATAL-DYKKSLKEYSDGNSGNLTVVF 46 (273)
Q Consensus 7 r~~~~~~~~~~~~~~~~~l-~~~k~l~~~~~~~~~~~~~~~ 46 (273)
.|+|-.. |+.| +|+++|+|||+++++ +|.|
T Consensus 62 q~~Li~~--------Gk~L~dD~~tL~dygI~~g~--~l~l 92 (105)
T 1v2y_A 62 TYHLTSA--------GEKLTEDRKKLRDYGIRNRD--EVSF 92 (105)
T ss_dssp TEEEESS--------SCEECCSSSBHHHHTCCSSE--EEEE
T ss_pred eEEEEeC--------CcCccCCcCCHHHcCCCCCC--EEEE
Confidence 4577643 5577 578999999999998 5444
No 84
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=72.14 E-value=2.4 Score=33.86 Aligned_cols=30 Identities=17% Similarity=0.186 Sum_probs=23.6
Q ss_pred CccccCcccccccccCCCCCceEEEEcccC
Q 043518 21 RATALDYKKSLKEYSDGNSGNLTVVFKDLG 50 (273)
Q Consensus 21 ~~~~l~~~k~l~~~~~~~~~~~~~~~kdlG 50 (273)
+|+.|+|+++|++|++++++++.+.++-.|
T Consensus 127 ~G~~L~d~~tL~~y~i~~g~~l~l~~rl~G 156 (159)
T 3rt3_B 127 EGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 156 (159)
T ss_dssp TTEECCTTSBGGGGTCCTTCEEEEEECCC-
T ss_pred CCeecCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 577889999999999999996556655544
No 85
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=71.64 E-value=2.6 Score=32.95 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=22.2
Q ss_pred CccccCcccccccccCCCCCceEEEEccc
Q 043518 21 RATALDYKKSLKEYSDGNSGNLTVVFKDL 49 (273)
Q Consensus 21 ~~~~l~~~k~l~~~~~~~~~~~~~~~kdl 49 (273)
+|+.|+|+++|++||+++++.+.+.++-.
T Consensus 122 ~g~~L~d~~tL~~~~i~~~~~i~l~~r~~ 150 (152)
T 3b08_A 122 AGKQLEDGRTLSDYNIQKESTLHLVLRLR 150 (152)
T ss_dssp TTEECCTTSBTGGGTCCTTCEEEEEECCC
T ss_pred CCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 56788899999999999999544554433
No 86
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=68.19 E-value=3.9 Score=30.30 Aligned_cols=39 Identities=8% Similarity=0.155 Sum_probs=30.0
Q ss_pred CccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEcccC
Q 043518 4 YPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDLG 50 (273)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kdlG 50 (273)
.|+.|||..+ |..|++++|.+++++.+++.+.++.+-.|
T Consensus 44 ~~~~~rf~Fd--------G~~l~~~~Tp~dl~medgD~Idv~~~~~G 82 (94)
T 2io1_B 44 SMRQIRFRFD--------GQPINETDTPAQLEMEDEDTIDVFQQQTG 82 (94)
T ss_dssp CGGGEEEEET--------TEECCTTCCTTTTTCCTTCEEEEEECCEE
T ss_pred CcccEEEEEC--------CEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 4577888765 66799999999999999996666655444
No 87
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=63.01 E-value=6.9 Score=28.81 Aligned_cols=39 Identities=8% Similarity=0.155 Sum_probs=29.2
Q ss_pred CccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEcccC
Q 043518 4 YPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDLG 50 (273)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kdlG 50 (273)
.|+.+||..+ |..|++++|.+++++.+++.+.++.+-.|
T Consensus 42 ~~~~~rf~Fd--------G~~l~~~~Tp~dl~medgD~Idv~~~q~g 80 (91)
T 2io0_B 42 SMRQIRFRFD--------GQPINETDTPAQLEMEDEDTIDVFQQQTG 80 (91)
T ss_dssp CSTTEEEEET--------TEECCTTCCTTTTTCCTTEEEEEEECCCC
T ss_pred CcccEEEEEC--------CEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 4567788764 66789999999999999995555554443
No 88
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=59.44 E-value=7.1 Score=27.08 Aligned_cols=32 Identities=6% Similarity=0.093 Sum_probs=25.2
Q ss_pred CccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEE
Q 043518 4 YPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVV 45 (273)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~ 45 (273)
.|+.+||..+ |..|++++|.+++++.+|+ ++.
T Consensus 38 ~~~~~rf~fd--------G~~l~~~~Tp~~l~medgD--~Id 69 (72)
T 1wm3_A 38 SMRQIRFRFD--------GQPINETDTPAQLEMEDED--TID 69 (72)
T ss_dssp CTTTCEEEET--------TEECCTTCCTTTTTCCTTE--EEE
T ss_pred CcceEEEEEC--------CEEcCCCCCHHHcCCCCCC--EEE
Confidence 3566777764 6678889999999999998 544
No 89
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=57.93 E-value=5.9 Score=28.87 Aligned_cols=24 Identities=8% Similarity=0.087 Sum_probs=20.6
Q ss_pred CCccccCcccccccccCCCCCceEEE
Q 043518 20 QRATALDYKKSLKEYSDGNSGNLTVV 45 (273)
Q Consensus 20 ~~~~~l~~~k~l~~~~~~~~~~~~~~ 45 (273)
.|+..|+.++.|.|+++++|+ .+.
T Consensus 56 NK~~~L~~~~~L~d~~ItnGD--~Le 79 (81)
T 2bps_A 56 NKDKVFSGECKLSDCGITNGD--RLE 79 (81)
T ss_dssp GGTEEEETTSBTGGGTCCTTC--EEE
T ss_pred cCCEEEcCCCEEeeCCcCCCC--EEE
Confidence 577788999999999999999 554
No 90
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=57.34 E-value=8.6 Score=28.26 Aligned_cols=36 Identities=6% Similarity=0.110 Sum_probs=27.7
Q ss_pred CccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEc
Q 043518 4 YPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFK 47 (273)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~k 47 (273)
.++.+||..+ |..|.+++|.+++++.+++.+.++.+
T Consensus 54 ~~~~~rf~fd--------G~~l~~~~Tp~dl~medgD~Idv~~~ 89 (93)
T 2d07_B 54 SMRQIRFRFD--------GQPINETDTPAQLEMEDEDTIDVFQQ 89 (93)
T ss_dssp CGGGEEEEET--------TEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred CccceEEEEC--------CEEcCCCCCHHHcCCCCCCEEEEEee
Confidence 4567788765 66799999999999999985545544
No 91
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=55.01 E-value=7.8 Score=27.52 Aligned_cols=33 Identities=9% Similarity=0.010 Sum_probs=26.0
Q ss_pred CccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEE
Q 043518 4 YPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVF 46 (273)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~ 46 (273)
.++.|||..+ |..|++++|.+++++.+|+ +|.+
T Consensus 45 ~~~~~rf~fd--------G~~l~~~~Tp~~l~medgD--~Idv 77 (79)
T 3a4r_A 45 SGHKLSFFFD--------GTKLSGKELPADLGLESGD--LIEV 77 (79)
T ss_dssp TTCCCEEEET--------TEECCSCCCHHHHTCCTTC--EEEE
T ss_pred CcccEEEEEC--------CEEcCCCCCHHHcCCCCCC--EEEE
Confidence 3567787764 6678999999999999998 6543
No 92
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.52 E-value=11 Score=27.92 Aligned_cols=37 Identities=27% Similarity=0.262 Sum_probs=26.7
Q ss_pred CCccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEccc
Q 043518 3 FYPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFKDL 49 (273)
Q Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~kdl 49 (273)
+.|++--|.-+ +..+.+||-+|+|+|+|++ ++|.+|-
T Consensus 46 fdp~~~~Ll~d-----~~~~e~LdLskSLndlgir-----ELya~d~ 82 (91)
T 2daj_A 46 FDPLHTLLLKD-----YQSQEPLDLTKSLNDLGLR-----ELYAMDV 82 (91)
T ss_dssp CCTTSEEEESC-----SSCCCBCCTTSCHHHHTCS-----EEEEEEC
T ss_pred CChhhEEEecC-----CCCCcccchhcchhhhhhh-----hhheecc
Confidence 45666665544 1344589999999999996 7888774
No 93
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=48.55 E-value=14 Score=28.04 Aligned_cols=36 Identities=3% Similarity=0.003 Sum_probs=27.4
Q ss_pred CccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEc
Q 043518 4 YPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFK 47 (273)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~k 47 (273)
.++.+||..+ |..|.+++|.+++++.+++.+.++.+
T Consensus 67 ~~~~~rF~Fd--------G~rl~~~~Tp~dl~medgD~Idv~~~ 102 (106)
T 2eke_C 67 EMDSLRFLYD--------GIRIQADQTPEDLDMEDNDIIEAHRE 102 (106)
T ss_dssp CGGGEEEEET--------TEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred CcccEEEEEC--------CeEcCCCCCHHHcCCCCCCEEEEEee
Confidence 3567788765 66788899999999999985545444
No 94
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=47.02 E-value=11 Score=28.39 Aligned_cols=36 Identities=6% Similarity=0.110 Sum_probs=26.8
Q ss_pred CccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEc
Q 043518 4 YPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFK 47 (273)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~k 47 (273)
.|+.+||..+ |..|++++|.+++++.+++.+.++.+
T Consensus 61 ~~~~~rf~Fd--------G~~l~~~~Tp~dl~medgD~Idv~~~ 96 (104)
T 1wz0_A 61 SMRQIRFRFD--------GQPINETDTPAQLEMEDEDTIDVFQQ 96 (104)
T ss_dssp CTTTSCEESS--------SSBCCTTSCTTTTTCCTTEEEEECCC
T ss_pred CcceEEEEEC--------CEEcCCCCCHHHcCCCCCCEEEEEEe
Confidence 3566777764 66788999999999999994444433
No 95
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=41.88 E-value=13 Score=29.36 Aligned_cols=24 Identities=21% Similarity=0.265 Sum_probs=19.1
Q ss_pred CccccCcccccccccCCCCCceEEEE
Q 043518 21 RATALDYKKSLKEYSDGNSGNLTVVF 46 (273)
Q Consensus 21 ~~~~l~~~k~l~~~~~~~~~~~~~~~ 46 (273)
...-||.+++|.+.|+.+++ +|.+
T Consensus 96 ~~~WLD~srtL~EQGI~e~~--tllL 119 (128)
T 2kc2_A 96 ELNWLDHGRTLREQGVEEHE--TLLL 119 (128)
T ss_dssp SEEEECSSSCHHHHTCCTTS--EEEE
T ss_pred CCCcccCCCcHHHcCCCCCC--EEEE
Confidence 34567889999999999998 5554
No 96
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=41.54 E-value=11 Score=28.86 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=27.3
Q ss_pred CccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEc
Q 043518 4 YPSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFK 47 (273)
Q Consensus 4 ~~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~k 47 (273)
.++.|||..+ |..|++++|.+++++.+++.+.++.+
T Consensus 63 ~~~~~rfiFd--------G~~L~~~~Tp~dl~mEDgD~Idv~~~ 98 (110)
T 2k8h_A 63 SRNSVRFLFD--------GTPIDETKTPEELGMEDDDVIDAMVE 98 (110)
T ss_dssp CSSSCEEESS--------SCBCCSSSHHHHHHCSSEEEEEEECC
T ss_pred CcccEEEEEC--------CEEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 4567788764 66788899999999999985545443
No 97
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=39.98 E-value=16 Score=26.03 Aligned_cols=20 Identities=15% Similarity=0.037 Sum_probs=16.3
Q ss_pred CcccccccccCCCCCceEEEEc
Q 043518 26 DYKKSLKEYSDGNSGNLTVVFK 47 (273)
Q Consensus 26 ~~~k~l~~~~~~~~~~~~~~~k 47 (273)
..+++++++|++.|+ .|++.
T Consensus 59 ~~~~~l~~lgl~hGd--~l~l~ 78 (80)
T 2pjh_A 59 SSSKSLHLLKIKHGD--LLFLF 78 (80)
T ss_dssp CCCCTTTTTCCCTTC--CEEC-
T ss_pred CCCCCHHHcCCCCCC--EEEEe
Confidence 477899999999999 77764
No 98
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=32.98 E-value=45 Score=25.66 Aligned_cols=35 Identities=11% Similarity=0.096 Sum_probs=26.1
Q ss_pred ccceeEecCCCCCCCCCccccCcccccccccCCCCCceEEEEc
Q 043518 5 PSRQRLTLPLPPGSKQRATALDYKKSLKEYSDGNSGNLTVVFK 47 (273)
Q Consensus 5 ~~r~~~~~~~~~~~~~~~~~l~~~k~l~~~~~~~~~~~~~~~k 47 (273)
++.+||..+ |..|+++.|.++++..+++.+.++..
T Consensus 78 ~~~irFlFD--------G~rI~~~~TP~dL~MEDgD~IdV~~~ 112 (115)
T 3kyd_D 78 MNSLRFLFE--------GQRIADNHTPKELGMEEEDVIEVYQE 112 (115)
T ss_dssp TTSEEEEET--------TEECCTTCCTTTTTCCTTCEEEEEEC
T ss_pred hhhEEEEEC--------CeECCCCCCHHHcCCCCCCEEEEEee
Confidence 456677654 66788899999999999995545443
No 99
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=25.27 E-value=33 Score=25.71 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=17.4
Q ss_pred ccccccccCCCCCceEEEEcccC
Q 043518 28 KKSLKEYSDGNSGNLTVVFKDLG 50 (273)
Q Consensus 28 ~k~l~~~~~~~~~~~~~~~kdlG 50 (273)
+|+++++|+.+|+ ++.|.|=-
T Consensus 65 ~k~l~eLgl~~g~--ei~VtD~~ 85 (98)
T 1y8x_B 65 SKTLKELGLVDGQ--ELAVADVT 85 (98)
T ss_dssp HSBSGGGTCCTTC--EEEEECTT
T ss_pred hCCHHHhCCCCCC--EEEEECCC
Confidence 5789999999998 88887743
No 100
>1rpq_W Peptide E131; receptor-peptide complex, membrane protein; HET: NAG BMA NDG CIT; 3.00A {Homo sapiens} PDB: 1kco_A
Probab=23.00 E-value=27 Score=19.35 Aligned_cols=10 Identities=30% Similarity=0.850 Sum_probs=7.5
Q ss_pred ccccchhHHH
Q 043518 203 VTCANYTTEI 212 (273)
Q Consensus 203 VscPNYf~Ei 212 (273)
|.|||+..|.
T Consensus 1 vqcphfcyel 10 (26)
T 1rpq_W 1 VQCPHFCYEL 10 (26)
T ss_dssp CCCCTHHHHS
T ss_pred CCCCeeeeec
Confidence 5789988773
No 101
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=20.69 E-value=88 Score=22.69 Aligned_cols=21 Identities=10% Similarity=0.074 Sum_probs=18.3
Q ss_pred CccccCcccccccccCCCCCc
Q 043518 21 RATALDYKKSLKEYSDGNSGN 41 (273)
Q Consensus 21 ~~~~l~~~k~l~~~~~~~~~~ 41 (273)
+|..|+.+.+++|++.++++.
T Consensus 56 DGdRLdp~~tp~DlemeD~D~ 76 (82)
T 3goe_A 56 EGEWLDPNDQVQSTELEDEDQ 76 (82)
T ss_dssp TTEECCTTSBGGGSSCCTTCE
T ss_pred cCcccCccCChhhhCCcCCce
Confidence 366799999999999999983
Done!