BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043519
(130 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8H0W1|PLSP1_ARATH Chloroplast processing peptidase OS=Arabidopsis thaliana GN=PLSP1
PE=2 SV=2
Length = 291
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/94 (67%), Positives = 71/94 (75%), Gaps = 9/94 (9%)
Query: 16 VTYYFREPFANDILIFKSPPLLQEVGYTDDGVYIKGIVAKEGDVVEACEGKLIVNGVVRN 75
V+YYFR+P ANDI+IFKSPP+LQEVGYTD V+IK IVAKEGD+VE GKL+VNGV RN
Sbjct: 158 VSYYFRKPCANDIVIFKSPPVLQEVGYTDADVFIKRIVAKEGDLVEVHNGKLMVNGVARN 217
Query: 76 KDFILEAPFYNMTPITVLENS---------NSYD 100
+ FILE P Y MTPI V ENS NSYD
Sbjct: 218 EKFILEPPGYEMTPIRVPENSVFVMGDNRNNSYD 251
>sp|Q9M9Z2|TPP2_ARATH Probable thylakoidal processing peptidase 2, chloroplastic
OS=Arabidopsis thaliana GN=TPP2 PE=2 SV=1
Length = 367
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/80 (53%), Positives = 58/80 (72%)
Query: 16 VTYYFREPFANDILIFKSPPLLQEVGYTDDGVYIKGIVAKEGDVVEACEGKLIVNGVVRN 75
V+Y+FR+P +DI+IFK+PP+L E GY+ V+IK IVA EGD VE C+GKL+VN V+
Sbjct: 230 VSYFFRKPEVSDIVIFKAPPILVEHGYSCADVFIKRIVASEGDWVEVCDGKLLVNDTVQA 289
Query: 76 KDFILEAPFYNMTPITVLEN 95
+DF+LE Y M P+ V E
Sbjct: 290 EDFVLEPIDYEMEPMFVPEG 309
>sp|O04348|TPP1_ARATH Thylakoidal processing peptidase 1, chloroplastic OS=Arabidopsis
thaliana GN=TPP1 PE=2 SV=2
Length = 340
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 57/80 (71%), Gaps = 3/80 (3%)
Query: 16 VTYYFREPFANDILIFKSPPLL---QEVGYTDDGVYIKGIVAKEGDVVEACEGKLIVNGV 72
V+Y+FR+P +DI+IFK+PP+L E GY+ + V+IK IVA EGD VE +GKL VN +
Sbjct: 200 VSYFFRKPEVSDIVIFKAPPILLEYPEYGYSSNDVFIKRIVASEGDWVEVRDGKLFVNDI 259
Query: 73 VRNKDFILEAPFYNMTPITV 92
V+ +DF+LE Y M P+ V
Sbjct: 260 VQEEDFVLEPMSYEMEPMFV 279
>sp|P72660|LEP1_SYNY3 Probable signal peptidase I-1 OS=Synechocystis sp. (strain PCC 6803
/ Kazusa) GN=lepB1 PE=3 SV=1
Length = 196
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 15 SVTYYFREPFANDILIFKSPPLLQEVGYTDDGVYIKGIVAKEGDVVEACEGKLIVNGVVR 74
V+Y+F P DI++F P LLQ GY +IK ++A G VE G + +G
Sbjct: 59 KVSYHFHPPQVGDIIVFHPPELLQVQGYDLGQAFIKRVIALPGQTVEVNNGIVYRDGQPL 118
Query: 75 NKDFILEAPFYNMTPITV 92
+++ILE P YN+ + V
Sbjct: 119 QEEYILEPPQYNLPAVRV 136
>sp|Q51876|LEP_PHOLA Signal peptidase I OS=Phormidium laminosum GN=lepB PE=3 SV=1
Length = 203
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 16 VTYYFREPFANDILIFKSPPLLQEVGYTDDGVYIKGIVAKEGDVVEACEGKLIVNGVVRN 75
++Y+F P DI++F L++ + + +IK ++ G+ V+ G++++NG
Sbjct: 75 ISYHFNPPRRGDIIVFHPTEALKQQNPSLNEAFIKRVIGLPGETVQVTGGRVLINGQPLE 134
Query: 76 KDFILEAPFYNMTPITVLENS---------NSYD 100
+++I P Y P V +S NSYD
Sbjct: 135 ENYIQSPPDYQWGPEKVPADSFLVLGDNRNNSYD 168
>sp|P73157|LEP2_SYNY3 Probable signal peptidase I-2 OS=Synechocystis sp. (strain PCC 6803
/ Kazusa) GN=lepB2 PE=3 SV=1
Length = 218
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 16 VTYYFREPFANDILIFKSPPLLQEVGYTDDGVYIKGIVAKEGDVVEACEGKLIVNGVVRN 75
++Y R+P +I++F L+ + D +IK I+ GD V +G + VNG + +
Sbjct: 68 ISYRLRDPERGEIVVFNPTDALKAKNFHD--AFIKRIIGLPGDEVRVSQGNVYVNGKMLD 125
Query: 76 KDFILEAPFYNMTPITVLEN---------SNSYD 100
+++I P Y P+ V ++ +NSYD
Sbjct: 126 ENYIAAPPAYEYGPVKVPDDQYLVLGDNRNNSYD 159
>sp|Q1WUT3|SYL_LACS1 Leucine--tRNA ligase OS=Lactobacillus salivarius (strain UCC118)
GN=leuS PE=3 SV=1
Length = 805
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 13/104 (12%)
Query: 37 LQEVGYTDDGVYIK-----GIVAKEGDVVEACEGKLIVNGV------VRNKDFILEAPFY 85
+Q+ YT DGV+I G+ +E ++A L NGV R +D++ Y
Sbjct: 366 VQKEAYTGDGVHINSDFLNGMDKEEA--IDAINNWLEENGVGEKKVNYRLRDWLFSRQRY 423
Query: 86 NMTPITVLENSNSYDLLVCLDELADHIPSSLDFKYQHHGNPSIA 129
PI V+ + LV DEL ++P + D K G +A
Sbjct: 424 WGEPIPVIHWEDGETTLVPEDELPLYLPKATDIKPSGTGESPLA 467
>sp|Q38UV5|RS9_LACSS 30S ribosomal protein S9 OS=Lactobacillus sakei subsp. sakei
(strain 23K) GN=rpsI PE=3 SV=1
Length = 130
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 9/47 (19%)
Query: 65 GKLIVNGVVRNKDFILEAPFYNM-----TPITVLENSNSYDLLVCLD 106
GK+ +N NKD + PF N+ P+T+ E ++SYD+LV ++
Sbjct: 26 GKITIN----NKDVVDYVPFANLILDMKQPLTITETTDSYDILVNVN 68
>sp|Q0AWK4|SYL_SYNWW Leucine--tRNA ligase OS=Syntrophomonas wolfei subsp. wolfei (strain
Goettingen) GN=leuS PE=3 SV=1
Length = 824
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 36 LLQEVGYTDDGVYIK-----GIVAKEGD--VVEACEGKLIVNGVV--RNKDFILEAPFYN 86
LLQE Y DG + G+ +EG V++ E K I G V R +D+++ Y
Sbjct: 373 LLQE-SYPGDGHMVNSGNFDGLTVEEGQKAVIKFMEEKGIGQGTVNYRLRDWLISRQRYW 431
Query: 87 MTPITVLENSNSYDLLVCLDELADHIPSSLDFK 119
PI ++ + V +EL ++P +DFK
Sbjct: 432 GAPIPIVYCPECGPVAVPEEELPLYLPEDIDFK 464
>sp|D4A1F2|MICA2_RAT Protein-methionine sulfoxide oxidase MICAL2 OS=Rattus norvegicus
GN=Mical2 PE=2 SV=1
Length = 961
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 22/120 (18%)
Query: 16 VTYYFREPFANDILIFKSPPLLQEVGYTDDGVYIKGIVAKEGDVVEACEGKLIVNGVVRN 75
V + F + F D+ L V Y D Y V+ A + L+ GV+ N
Sbjct: 266 VAFIFNQKFFQDLKEETGIDLENIVYYKDSTHYF---------VMTAKKQSLLDKGVILN 316
Query: 76 KDFILEAPFYNMTPITVLENSNSYDLLVCLDELAD-----HIPSSLDFKYQHHGNPSIAI 130
D+I + + EN N +LL E AD +PS LDF H+G P +A+
Sbjct: 317 -DYI------DTEMLLCAENVNQDNLLSYAREAADFATNYQLPS-LDFAINHNGQPDVAM 368
>sp|Q87N39|DNAE2_VIBPA Error-prone DNA polymerase OS=Vibrio parahaemolyticus serotype O3:K6
(strain RIMD 2210633) GN=dnaE2 PE=3 SV=1
Length = 1024
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 4 AYVVTSLRRKGS---VTYYFREPFANDI--LIFKSPPLLQEVGY-TDDGVYIKGIVAKEG 57
A VVT + G+ VT++ E +I +++ + Q+ Y T + +KGI+ +EG
Sbjct: 937 AGVVTGRQSPGTAAGVTFFTLEDDTGNINVVVWSATARAQKQAYLTSKILMVKGILEREG 996
Query: 58 DVVEACEGKLI 68
+V+ GKLI
Sbjct: 997 EVIHVIAGKLI 1007
>sp|A7MUN4|DNAE2_VIBHB Error-prone DNA polymerase OS=Vibrio harveyi (strain ATCC BAA-1116 /
BB120) GN=dnaE2 PE=3 SV=1
Length = 1024
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 6 VVTSLRRKGS---VTYYFREPFANDI--LIFKSPPLLQEVGY-TDDGVYIKGIVAKEGDV 59
VVT + G+ VT++ E +I +++++ Q+ Y T + +KGI+ +EG+V
Sbjct: 939 VVTGRQSPGTAAGVTFFTLEDDTGNINVVVWRATARAQKQAYLTSKVLMVKGILEREGEV 998
Query: 60 VEACEGKLI 68
GKLI
Sbjct: 999 THVIAGKLI 1007
>sp|Q8BML1|MICA2_MOUSE Protein-methionine sulfoxide oxidase MICAL2 OS=Mus musculus
GN=Mical2 PE=1 SV=1
Length = 960
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 22/120 (18%)
Query: 16 VTYYFREPFANDILIFKSPPLLQEVGYTDDGVYIKGIVAKEGDVVEACEGKLIVNGVVRN 75
V + F + F D+ L V Y D Y V+ A + L+ GV+ N
Sbjct: 266 VAFIFNQKFFQDLKEETGIDLENIVYYKDSTHYF---------VMTAKKQSLLDKGVILN 316
Query: 76 KDFILEAPFYNMTPITVLENSNSYDLLVCLDELAD-----HIPSSLDFKYQHHGNPSIAI 130
D+I + + EN N +LL E AD +PS LDF H+G P +A+
Sbjct: 317 -DYI------DTEMLLCSENVNQDNLLSYAREAADFATNYQLPS-LDFAINHNGQPDVAM 368
>sp|Q499N2|AP5M1_RAT AP-5 complex subunit mu-1 OS=Rattus norvegicus GN=Ap5m1 PE=2 SV=1
Length = 490
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 14/76 (18%)
Query: 34 PPLLQEVGYTDDGVYIKGIVAKEGDVVEACEGKLIVNGVVRNKDFILEA--PFYNMTPIT 91
PP+L +DG +K V L ++ VRN I EA PFYN PIT
Sbjct: 320 PPILGSYHMKEDGAQLKITV------------NLKLHESVRNNFEICEAHIPFYNRGPIT 367
Query: 92 VLENSNSYDLLVCLDE 107
LE S+ L E
Sbjct: 368 HLEYKVSFGQLEVFRE 383
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.141 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,689,226
Number of Sequences: 539616
Number of extensions: 2001883
Number of successful extensions: 4184
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 4176
Number of HSP's gapped (non-prelim): 21
length of query: 130
length of database: 191,569,459
effective HSP length: 96
effective length of query: 34
effective length of database: 139,766,323
effective search space: 4752054982
effective search space used: 4752054982
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)