Query 043519
Match_columns 130
No_of_seqs 195 out of 1138
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 09:43:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043519.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043519hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b12_A Signal peptidase I; ser 100.0 8.6E-35 3E-39 218.5 9.2 119 1-126 16-231 (248)
2 1kca_A Repressor protein CI; g 98.8 3.3E-08 1.1E-12 65.0 9.6 79 3-127 31-109 (109)
3 1umu_A UMUD'; induced mutagene 98.6 2.9E-07 9.8E-12 60.8 8.6 42 1-56 37-79 (116)
4 3bdn_A Lambda repressor; repre 98.1 9.7E-06 3.3E-10 58.9 7.7 79 3-127 158-236 (236)
5 1jhf_A LEXA repressor; LEXA SO 98.1 8.2E-06 2.8E-10 58.3 7.1 48 1-63 120-168 (202)
6 2hnf_A Repressor protein CI101 98.1 1.3E-05 4.4E-10 54.0 7.4 42 3-57 62-103 (133)
7 3k2z_A LEXA repressor; winged 97.4 0.00047 1.6E-08 49.1 7.1 42 1-56 120-161 (196)
8 2fjr_A Repressor protein CI; g 94.3 0.14 5E-06 35.3 6.7 43 6-63 120-162 (189)
9 1w4s_A Polybromo, polybromo 1 62.8 10 0.00035 26.0 4.3 59 3-72 7-65 (174)
10 3i4o_A Translation initiation 58.9 2.9 0.0001 25.4 0.8 14 22-35 53-66 (79)
11 1d7q_A Translation initiation 55.5 9.5 0.00032 25.8 2.9 12 23-34 70-81 (143)
12 1jt8_A EIF-1A, probable transl 53.7 4.4 0.00015 25.8 1.0 12 23-34 59-70 (102)
13 2dgy_A MGC11102 protein; EIF-1 52.5 9.5 0.00032 24.6 2.5 30 5-35 34-66 (111)
14 3mx7_A FAS apoptotic inhibitor 46.6 30 0.001 21.5 4.0 27 46-75 61-87 (90)
15 2pp6_A Gifsy-2 prophage ATP-bi 45.2 14 0.00047 23.5 2.3 23 22-55 63-85 (102)
16 4h4g_A (3R)-hydroxymyristoyl-[ 44.3 13 0.00045 25.1 2.3 22 55-76 112-146 (160)
17 4dt4_A FKBP-type 16 kDa peptid 40.2 67 0.0023 21.9 5.4 33 23-64 113-145 (169)
18 3pqh_A Gene product 138; beta- 37.8 55 0.0019 21.5 4.4 42 14-65 27-72 (127)
19 3vup_A Beta-1,4-mannanase; TIM 35.4 19 0.00066 25.5 2.1 16 59-74 1-16 (351)
20 2jv8_A Uncharacterized protein 35.2 43 0.0015 19.0 3.1 21 55-75 8-29 (73)
21 2hd9_A UPF0310 protein PH1033; 34.4 40 0.0014 22.4 3.4 31 21-55 33-63 (145)
22 3p8d_A Medulloblastoma antigen 32.8 25 0.00085 20.5 1.9 15 44-58 19-33 (67)
23 1yez_A MM1357; MAR30, autostru 30.6 21 0.00071 20.3 1.3 17 45-63 37-53 (68)
24 4b8u_A 3-hydroxydecanoyl-[acyl 29.9 1.3E+02 0.0043 20.6 5.5 29 47-76 128-156 (171)
25 1yvc_A MRR5; structure, autost 29.4 22 0.00077 20.4 1.3 16 46-63 40-55 (70)
26 3cgm_A SLYD, peptidyl-prolyl C 28.9 1.2E+02 0.004 20.2 5.1 34 22-64 84-117 (158)
27 3v2d_V 50S ribosomal protein L 27.9 47 0.0016 20.9 2.7 21 7-32 16-36 (101)
28 2ii1_A Acetamidase; 10172637, 26.9 1.3E+02 0.0045 22.5 5.5 10 54-63 69-78 (301)
29 3r8s_R 50S ribosomal protein L 26.9 46 0.0016 20.9 2.6 22 6-32 15-36 (103)
30 3a2z_A Bifunctional glutathion 26.2 1.5E+02 0.005 20.8 5.3 37 21-63 110-146 (197)
31 3r8n_I 30S ribosomal protein S 25.7 48 0.0016 21.8 2.5 29 44-78 8-36 (127)
32 1hr0_W Translation initiation 25.7 53 0.0018 18.9 2.5 13 22-34 46-58 (71)
33 3l53_A Putative fumarylacetoac 25.3 40 0.0014 24.0 2.3 29 21-63 180-208 (224)
34 4dbf_A 2-hydroxyhepta-2,4-dien 25.3 54 0.0018 24.5 3.1 15 21-35 246-260 (288)
35 2e6z_A Transcription elongatio 25.2 33 0.0011 19.1 1.5 11 55-65 9-19 (59)
36 3uv0_A Mutator 2, isoform B; F 25.2 29 0.001 22.0 1.4 13 62-74 59-71 (102)
37 3j20_K 30S ribosomal protein S 25.1 67 0.0023 21.3 3.2 25 45-75 10-34 (135)
38 3u5c_Q RP61R, 40S ribosomal pr 25.0 55 0.0019 21.9 2.8 27 44-76 12-38 (143)
39 2wac_A CG7008-PA; unknown func 24.4 1.6E+02 0.0054 20.0 5.3 34 22-63 51-84 (218)
40 2wqt_A 2-keto-4-pentenoate hyd 24.2 60 0.0021 23.6 3.2 14 21-34 221-234 (270)
41 3mjj_A Predicted acetamidase/f 24.0 88 0.003 23.5 4.0 10 54-63 71-80 (301)
42 2vqe_I 30S ribosomal protein S 23.7 31 0.0011 22.7 1.3 29 44-78 9-37 (128)
43 2p5d_A UPF0310 protein mjecl36 23.4 57 0.0019 21.6 2.7 12 21-32 36-47 (147)
44 2dfu_A Probable 2-hydroxyhepta 23.3 62 0.0021 23.6 3.1 14 21-34 217-230 (264)
45 3mt1_A Putative carboxynorsper 23.2 76 0.0026 23.9 3.7 30 3-35 293-322 (365)
46 2z1c_A Hydrogenase expression/ 22.8 52 0.0018 19.5 2.1 10 24-33 37-46 (75)
47 3fdr_A Tudor and KH domain-con 22.5 1.3E+02 0.0044 17.8 5.3 33 22-62 27-60 (94)
48 3rr6_A Putative uncharacterize 22.2 49 0.0017 24.3 2.3 29 21-63 221-249 (265)
49 2ja9_A Exosome complex exonucl 22.0 48 0.0016 22.8 2.1 16 1-16 48-63 (175)
50 1wzo_A HPCE; structural genomi 21.9 1.3E+02 0.0045 21.4 4.6 29 21-63 203-231 (246)
51 2kzv_A Uncharacterized protein 21.8 30 0.001 21.3 0.9 10 97-106 41-50 (92)
52 1o9y_A HRCQ2; secretory protei 21.8 91 0.0031 18.5 3.1 12 22-33 35-46 (84)
53 3uep_A YSCQ-C, type III secret 21.7 62 0.0021 19.9 2.4 12 22-33 39-50 (96)
54 3vab_A Diaminopimelate decarbo 21.4 91 0.0031 24.3 3.9 30 3-35 366-395 (443)
55 1vzm_A Osteocalcin; calcium-bi 21.3 14 0.00047 20.0 -0.6 7 102-108 38-44 (45)
56 2kr7_A FKBP-type peptidyl-prol 21.2 1.8E+02 0.0062 19.0 7.0 34 22-64 93-126 (151)
57 3bbn_I Ribosomal protein S9; s 20.6 58 0.002 23.1 2.3 28 44-77 77-104 (197)
58 2zkq_i 40S ribosomal protein S 20.3 62 0.0021 21.8 2.3 25 44-74 15-39 (146)
59 4awe_A Endo-beta-D-1,4-mannana 20.2 57 0.0019 23.2 2.3 16 59-74 6-21 (387)
No 1
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*
Probab=100.00 E-value=8.6e-35 Score=218.48 Aligned_cols=119 Identities=19% Similarity=0.183 Sum_probs=97.3
Q ss_pred CccccccCCEEEEEccccC------------CCCCCCCcEEEEecCCcccccccCCCceEEEEEEEeCCCEEEEeCC--E
Q 043519 1 MLRAYVVTSLRRKGSVTYY------------FREPFANDILIFKSPPLLQEVGYTDDGVYIKGIVAKEGDVVEACEG--K 66 (130)
Q Consensus 1 M~Ptl~~gd~vlv~k~~~~------------~~~~~rGDiVvf~~p~~~~~~~~~~~~~~vKRVig~pGD~v~~~~~--~ 66 (130)
|+|||+.||+|+|+|++|. .+.++|||||+|+.|. ..+..+||||+|+|||+|+++++ +
T Consensus 16 M~Ptl~~GD~vlv~k~~yg~r~P~~~~~l~~~~~~~rGDIvvf~~p~-------~~~~~~iKRViglpGD~v~i~~~~~~ 88 (248)
T 1b12_A 16 MMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPE-------DPKLDYIKRAVGLPGDKVTYDPVSKE 88 (248)
T ss_dssp TTTTSCTTEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTT-------CTTSEEEEEEEECTTCEEEEETTTTE
T ss_pred ccccccCCCEEEEEecccCcccccccccccccCCCCCCcEEEEEeCC-------CCCceEEEEEEeeCCCEEEEEcCceE
Confidence 9999999999999998875 3579999999999986 35679999999999999999999 9
Q ss_pred EEECC-----------EEccccccc---------------------------------------c-----------CCC-
Q 043519 67 LIVNG-----------VVRNKDFIL---------------------------------------E-----------APF- 84 (130)
Q Consensus 67 l~vng-----------~~~~~~~~~---------------------------------------~-----------~~~- 84 (130)
||||| +.+.+++.. + .+.
T Consensus 89 l~ING~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~ 168 (248)
T 1b12_A 89 LTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIA 168 (248)
T ss_dssp EEEETTCCSSCCCCCCCCEEECCCEEEEEEEEEECGGGSCEEEEEEECCTTCCCTTEEEEEEEEEEETTEEEEEEECTTC
T ss_pred EEECCccccccccccceeeeeeccccccccccccccccccccccccccccccccccchhhhhHHhhhcCccceeEecCCc
Confidence 99999 655432110 0 000
Q ss_pred ------C------CCCCEEeCCCC---------CCCCCCccccccCCCeeeEEEEEEeeCCCC
Q 043519 85 ------Y------NMTPITVLENS---------NSYDLLVCLDELADHIPSSLDFKYQHHGNP 126 (130)
Q Consensus 85 ------~------~~~~~~vp~g~---------~S~DSR~~G~V~~~~I~Gkv~~~~~P~~~~ 126 (130)
+ ...+++||+|+ +|.||||||+||+++|+|||++++||+++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~VP~g~yFvmGDNR~nS~DSR~~G~Vp~~~IvGka~~i~~s~~~~ 231 (248)
T 1b12_A 169 QDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDKQ 231 (248)
T ss_dssp CCCGGGSCCCTTCCTTEEECCTTEEEEECSBTTSCCCHHHHCCEEGGGEEEEEEEEEEEBC--
T ss_pred cccccchhcccccccccEEeCCCcEEEecCCCcccCCCCcccccCHHHeEEEEEEEEEeCCcc
Confidence 0 12357899998 899999999999999999999999998865
No 2
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=98.83 E-value=3.3e-08 Score=64.98 Aligned_cols=79 Identities=13% Similarity=-0.014 Sum_probs=55.5
Q ss_pred cccccCCEEEEEccccCCCCCCCCcEEEEecCCcccccccCCCceEEEEEEEeCCCEEEEeCCEEEECCEEccccccccC
Q 043519 3 RAYVVTSLRRKGSVTYYFREPFANDILIFKSPPLLQEVGYTDDGVYIKGIVAKEGDVVEACEGKLIVNGVVRNKDFILEA 82 (130)
Q Consensus 3 Ptl~~gd~vlv~k~~~~~~~~~rGDiVvf~~p~~~~~~~~~~~~~~vKRVig~pGD~v~~~~~~l~vng~~~~~~~~~~~ 82 (130)
|||.+||+|++++.. +++.||+|++..+ .+..++||++..+| .+.+... +
T Consensus 31 p~i~~Gd~v~Vd~~~----~~~~Gdivv~~~~---------~~~~~vKrl~~~~~-~~~L~s~---------N------- 80 (109)
T 1kca_A 31 PSFPDGMLILVDPEQ----AVEPGDFCIARLG---------GDEFTFKKLIRDSG-QVFLQPL---------N------- 80 (109)
T ss_dssp SCCCTTCEEEEETTS----CCCTTCEEEEECS---------TTCEEEEEEEEETT-EEEEECS---------S-------
T ss_pred CeeCCCCEEEEecCC----cCCCCCEEEEEEC---------CCeEEEEEEEEeCC-EEEEEEC---------C-------
Confidence 999999999999753 5899999999874 24789999998643 3333210 0
Q ss_pred CCCCCCCEEeCCCCCCCCCCccccccCCCeeeEEEEEEeeCCCCC
Q 043519 83 PFYNMTPITVLENSNSYDLLVCLDELADHIPSSLDFKYQHHGNPS 127 (130)
Q Consensus 83 ~~~~~~~~~vp~g~~S~DSR~~G~V~~~~I~Gkv~~~~~P~~~~g 127 (130)
+ .+.++.+. ..-.|+|+|+..+||+..||
T Consensus 81 ~--~y~~~~~~--------------~~~~IiG~Vv~~~~~~~~~~ 109 (109)
T 1kca_A 81 P--QYPMIPCN--------------ESCSVVGKVIASQWPEETFG 109 (109)
T ss_dssp T--TSCCEECC--------------TTCEEEEEEEEEECCGGGGC
T ss_pred C--CCCCEEcC--------------CCcEEEEEEEEEEeCHHHcC
Confidence 1 11223321 13579999999999988775
No 3
>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A
Probab=98.60 E-value=2.9e-07 Score=60.82 Aligned_cols=42 Identities=17% Similarity=0.111 Sum_probs=36.3
Q ss_pred Ccc-ccccCCEEEEEccccCCCCCCCCcEEEEecCCcccccccCCCceEEEEEEEeC
Q 043519 1 MLR-AYVVTSLRRKGSVTYYFREPFANDILIFKSPPLLQEVGYTDDGVYIKGIVAKE 56 (130)
Q Consensus 1 M~P-tl~~gd~vlv~k~~~~~~~~~rGDiVvf~~p~~~~~~~~~~~~~~vKRVig~p 56 (130)
|+| ||++||+|++++.. .++.||+|++..+ +..++||+...+
T Consensus 37 M~p~~i~~Gd~v~vd~~~----~~~~gdivv~~~~----------~~~~vKr~~~~~ 79 (116)
T 1umu_A 37 MIDGGISDGDLLIVDSAI----TASHGDIVIAAVD----------GEFTVKKLQLRP 79 (116)
T ss_dssp TGGGTCCTTCEEEEETTS----CCCTTCEEEEEET----------TEEEEEEEECSS
T ss_pred cCCCCCCCCCEEEEEcCC----CCCCCCEEEEEEC----------CEEEEEEEEeCC
Confidence 999 89999999999753 5899999999873 478999999865
No 4
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=98.11 E-value=9.7e-06 Score=58.92 Aligned_cols=79 Identities=11% Similarity=-0.007 Sum_probs=54.0
Q ss_pred cccccCCEEEEEccccCCCCCCCCcEEEEecCCcccccccCCCceEEEEEEEeCCCEEEEeCCEEEECCEEccccccccC
Q 043519 3 RAYVVTSLRRKGSVTYYFREPFANDILIFKSPPLLQEVGYTDDGVYIKGIVAKEGDVVEACEGKLIVNGVVRNKDFILEA 82 (130)
Q Consensus 3 Ptl~~gd~vlv~k~~~~~~~~~rGDiVvf~~p~~~~~~~~~~~~~~vKRVig~pGD~v~~~~~~l~vng~~~~~~~~~~~ 82 (130)
|+|.+||+|+|++-. .+..||+|++... .+..++||+...+|..+...+ | ..|
T Consensus 158 P~i~~Gd~v~vd~~~----~~~~g~ivv~~~~---------~~~~~vKrl~~~~~~~~L~s~-----N-----~~y---- 210 (236)
T 3bdn_A 158 PSFPDGMLILVDPEQ----AVEPGDFCIARLG---------GDEFTFKKLIRGSGQVFLQPL-----N-----PQY---- 210 (236)
T ss_dssp SCCCSSCEEEECCSS----CCCTTSEEEEEST---------TTCCCCEEEECCSSSCEEECS-----S-----TTS----
T ss_pred CcCCCCCEEEECCCC----CCCCCcEEEEEEC---------CCeEEEEEEEEcCCcEEEEeC-----C-----CCC----
Confidence 999999999998743 6899999999873 357899999876554332211 0 111
Q ss_pred CCCCCCCEEeCCCCCCCCCCccccccCCCeeeEEEEEEeeCCCCC
Q 043519 83 PFYNMTPITVLENSNSYDLLVCLDELADHIPSSLDFKYQHHGNPS 127 (130)
Q Consensus 83 ~~~~~~~~~vp~g~~S~DSR~~G~V~~~~I~Gkv~~~~~P~~~~g 127 (130)
.++.+. ..-.|+|+|+..+||...|+
T Consensus 211 -----~~~~~~--------------~~~~IiG~Vv~~~~~~~~~~ 236 (236)
T 3bdn_A 211 -----PMIPCN--------------ESCSVVGKVIASQWPEETFG 236 (236)
T ss_dssp -----CCBC----------------CCCEEEEEEEECCCCSSSCC
T ss_pred -----CCeecC--------------CCcEEEEEEEEEEcCHHhcC
Confidence 111111 23479999999999988774
No 5
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=98.10 E-value=8.2e-06 Score=58.30 Aligned_cols=48 Identities=21% Similarity=0.254 Sum_probs=40.4
Q ss_pred Cccc-cccCCEEEEEccccCCCCCCCCcEEEEecCCcccccccCCCceEEEEEEEeCCCEEEEe
Q 043519 1 MLRA-YVVTSLRRKGSVTYYFREPFANDILIFKSPPLLQEVGYTDDGVYIKGIVAKEGDVVEAC 63 (130)
Q Consensus 1 M~Pt-l~~gd~vlv~k~~~~~~~~~rGDiVvf~~p~~~~~~~~~~~~~~vKRVig~pGD~v~~~ 63 (130)
|+|+ |.+||+|+|++. ..++.||+|++.. .+..++||+. .+|+.+.+.
T Consensus 120 M~p~~i~~Gd~v~vd~~----~~~~~G~i~v~~~----------~~~~~vKrl~-~~~~~~~l~ 168 (202)
T 1jhf_A 120 MKDIGIMDGDLLAVHKT----QDVRNGQVVVARI----------DDEVTVKRLK-KQGNKVELL 168 (202)
T ss_dssp TGGGTCCTTCEEEEEEC----SCCCTTSEEEEEE----------TTEEEEEEEE-EETTEEEEE
T ss_pred CCCCCCCCCCEEEEecc----CCcCCCeEEEEEE----------CCEEEEEEEE-EeCCEEEEE
Confidence 9999 999999999874 2589999999986 2579999999 677777664
No 6
>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A
Probab=98.08 E-value=1.3e-05 Score=54.04 Aligned_cols=42 Identities=12% Similarity=0.088 Sum_probs=35.1
Q ss_pred cccccCCEEEEEccccCCCCCCCCcEEEEecCCcccccccCCCceEEEEEEEeCC
Q 043519 3 RAYVVTSLRRKGSVTYYFREPFANDILIFKSPPLLQEVGYTDDGVYIKGIVAKEG 57 (130)
Q Consensus 3 Ptl~~gd~vlv~k~~~~~~~~~rGDiVvf~~p~~~~~~~~~~~~~~vKRVig~pG 57 (130)
|+|.+||+|+|++. .+++.||+|++... .+..++||++-.+|
T Consensus 62 p~i~~Gd~v~vd~~----~~~~~Gdivv~~~~---------~~~~~vKrl~~~~~ 103 (133)
T 2hnf_A 62 TSFPDGMLILVDPE----QAVEPGDFCIARLG---------GDEFTFAKLIRDSG 103 (133)
T ss_dssp CCCCTTCEEEEETT----SCCCTTSEEEEEET---------TTEEEEEEEEEETT
T ss_pred CccCCCCEEEEccC----CCCCCCCEEEEEEC---------CCEEEEEEEEEeCC
Confidence 99999999999974 26899999999874 25789999987543
No 7
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=97.42 E-value=0.00047 Score=49.06 Aligned_cols=42 Identities=12% Similarity=-0.020 Sum_probs=34.2
Q ss_pred CccccccCCEEEEEccccCCCCCCCCcEEEEecCCcccccccCCCceEEEEEEEeC
Q 043519 1 MLRAYVVTSLRRKGSVTYYFREPFANDILIFKSPPLLQEVGYTDDGVYIKGIVAKE 56 (130)
Q Consensus 1 M~Ptl~~gd~vlv~k~~~~~~~~~rGDiVvf~~p~~~~~~~~~~~~~~vKRVig~p 56 (130)
.+|++.+||+|+|++. ..++.||+|++.. .+..++||+.-.+
T Consensus 120 ~~p~i~~GD~viv~~~----~~~~~G~ivv~~~----------~~~~~vKr~~~~~ 161 (196)
T 3k2z_A 120 IEEHICDGDLVLVRRQ----DWAQNGDIVAAMV----------DGEVTLAKFYQRG 161 (196)
T ss_dssp GGGTCCTTCEEEEEEC----SCCCTTCEEEEEE----------TTEEEEEEEEEET
T ss_pred CCCCCCCCCEEEEecc----CcCCCCCEEEEEE----------CCcEEEEEEEEEC
Confidence 0699999999999974 2688999999986 3579999997653
No 8
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=94.30 E-value=0.14 Score=35.26 Aligned_cols=43 Identities=5% Similarity=0.125 Sum_probs=33.8
Q ss_pred ccCCEEEEEccccCCCCCCCCcEEEEecCCcccccccCCCceEEEEEEEeCCCEEEEe
Q 043519 6 VVTSLRRKGSVTYYFREPFANDILIFKSPPLLQEVGYTDDGVYIKGIVAKEGDVVEAC 63 (130)
Q Consensus 6 ~~gd~vlv~k~~~~~~~~~rGDiVvf~~p~~~~~~~~~~~~~~vKRVig~pGD~v~~~ 63 (130)
.+||+|+|++- .+..|+++++.. .+..+|||+.-.+|+.+.+.
T Consensus 120 ~~Gd~v~Vd~~-----~~~~g~i~vv~~----------~g~~~vKrl~~~~~~~i~L~ 162 (189)
T 2fjr_A 120 SEGKIYFVDKQ-----ASLSDGLWLVDI----------KGAISIRELTKLPGRKLHVA 162 (189)
T ss_dssp ETTEEEEEETT-----CCSCSEEEEEEE----------TTEEEEEEEEEETTTEEEEE
T ss_pred eCCcEEEEEcC-----CccCCCEEEEEe----------CCeEEEEEEEECCCCEEEEE
Confidence 57999999863 256799999976 35789999998888777664
No 9
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=62.77 E-value=10 Score=25.97 Aligned_cols=59 Identities=10% Similarity=-0.003 Sum_probs=26.6
Q ss_pred cccccCCEEEEEccccCCCCCCCCcEEEEecCCcccccccCCCceEEEEEEEeCCCEEEEeCCEEEECCE
Q 043519 3 RAYVVTSLRRKGSVTYYFREPFANDILIFKSPPLLQEVGYTDDGVYIKGIVAKEGDVVEACEGKLIVNGV 72 (130)
Q Consensus 3 Ptl~~gd~vlv~k~~~~~~~~~rGDiVvf~~p~~~~~~~~~~~~~~vKRVig~pGD~v~~~~~~l~vng~ 72 (130)
|-...+++.+...+.+.-..++.||.|.+.++. .....+|-||..+=-+ .+|..++++.
T Consensus 7 ~~~~~~~r~~y~~~~~~g~~~~vGD~V~v~~~~-------~~~~p~I~rI~~i~~~----~~g~~~v~v~ 65 (174)
T 1w4s_A 7 AGLSSLHRTYSQDCSFKNSMYHVGDYVYVEPAE-------ANLQPHIVCIERLWED----SAGEKWLYGC 65 (174)
T ss_dssp -------------------CCCTTCEEEECCSS-------TTSCCEEEEEEEEEEC----TTCCEEEEEE
T ss_pred ccccCCCcEEeEEEEECCEEEECCCEEEEeCCC-------CCCCCEEEEEEEEEEc----CCCCEEEEEE
Confidence 334444555544444444578999999998865 2356788888765211 2455555554
No 10
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=58.88 E-value=2.9 Score=25.41 Aligned_cols=14 Identities=14% Similarity=0.368 Sum_probs=10.7
Q ss_pred CCCCCcEEEEecCC
Q 043519 22 EPFANDILIFKSPP 35 (130)
Q Consensus 22 ~~~rGDiVvf~~p~ 35 (130)
.+..||.|.+...+
T Consensus 53 ~Il~GD~V~ve~~~ 66 (79)
T 3i4o_A 53 RILPEDRVVVELSP 66 (79)
T ss_dssp CCCTTCEEEEEEET
T ss_pred cCCCCCEEEEEECc
Confidence 47889999887643
No 11
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=55.46 E-value=9.5 Score=25.77 Aligned_cols=12 Identities=17% Similarity=0.171 Sum_probs=7.2
Q ss_pred CCCCcEEEEecC
Q 043519 23 PFANDILIFKSP 34 (130)
Q Consensus 23 ~~rGDiVvf~~p 34 (130)
+.+||+|++...
T Consensus 70 I~~GD~VlVe~~ 81 (143)
T 1d7q_A 70 INTSDIILVGLR 81 (143)
T ss_dssp CCTTCEEEEECS
T ss_pred ecCCCEEEEeec
Confidence 556666666653
No 12
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=53.72 E-value=4.4 Score=25.81 Aligned_cols=12 Identities=25% Similarity=0.216 Sum_probs=7.8
Q ss_pred CCCCcEEEEecC
Q 043519 23 PFANDILIFKSP 34 (130)
Q Consensus 23 ~~rGDiVvf~~p 34 (130)
+.+||+|++...
T Consensus 59 I~~GD~VlVe~~ 70 (102)
T 1jt8_A 59 VREGDVVIVKPW 70 (102)
T ss_dssp CCSCEEEEECCB
T ss_pred ecCCCEEEEEec
Confidence 566777777653
No 13
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.54 E-value=9.5 Score=24.58 Aligned_cols=30 Identities=13% Similarity=-0.046 Sum_probs=17.4
Q ss_pred cccCCEEEEEccccCCC---CCCCCcEEEEecCC
Q 043519 5 YVVTSLRRKGSVTYYFR---EPFANDILIFKSPP 35 (130)
Q Consensus 5 l~~gd~vlv~k~~~~~~---~~~rGDiVvf~~p~ 35 (130)
+.+|..+++. +.-+++ .+.+||+|++...+
T Consensus 34 l~nG~~~la~-i~GK~Rk~IwI~~GD~VlVe~~~ 66 (111)
T 2dgy_A 34 TAQGQRFLVS-MPSKYRKNIWIKRGDFLIVDPIE 66 (111)
T ss_dssp CTTSCEEEEE-CCTTCCSCCCCCSSCEEEEEECS
T ss_pred eCCCCEEEEE-echhhcccEEEcCCCEEEEEecc
Confidence 3456666664 222222 36888888887643
No 14
>3mx7_A FAS apoptotic inhibitory molecule 1; beta sheet, apoptosis; 1.76A {Homo sapiens}
Probab=46.57 E-value=30 Score=21.45 Aligned_cols=27 Identities=26% Similarity=0.096 Sum_probs=20.5
Q ss_pred ceEEEEEEEeCCCEEEEeCCEEEECCEEcc
Q 043519 46 GVYIKGIVAKEGDVVEACEGKLIVNGVVRN 75 (130)
Q Consensus 46 ~~~vKRVig~pGD~v~~~~~~l~vng~~~~ 75 (130)
....=+|.|++|+..+. .|+|||+.+.
T Consensus 61 ~k~~I~I~a~~~~~y~Y---tL~VngKslk 87 (90)
T 3mx7_A 61 TKATINIDAISGFAYEY---TLEINGKSLK 87 (90)
T ss_dssp EEEEEEEEEETTTEEEE---EEEETTEEEE
T ss_pred eEEEEEEEecCCccEEE---EEEECCEeHH
Confidence 45555678888888877 6899999764
No 15
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=45.23 E-value=14 Score=23.49 Aligned_cols=23 Identities=13% Similarity=0.171 Sum_probs=17.0
Q ss_pred CCCCCcEEEEecCCcccccccCCCceEEEEEEEe
Q 043519 22 EPFANDILIFKSPPLLQEVGYTDDGVYIKGIVAK 55 (130)
Q Consensus 22 ~~~rGDiVvf~~p~~~~~~~~~~~~~~vKRVig~ 55 (130)
.|+|||.|++. ...+.|+|---.
T Consensus 63 rP~r~D~Vv~~-----------Gk~y~Vtr~~~~ 85 (102)
T 2pp6_A 63 IPRRGDRVVLR-----------GSEFTVTRIRRF 85 (102)
T ss_dssp CCCTTCEEEET-----------TEEEEEEEEEEE
T ss_pred ccCCCCEEEEc-----------CcEEEEEEEEEE
Confidence 58999999996 356788875433
No 16
>4h4g_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Burkholderia thailandensis}
Probab=44.29 E-value=13 Score=25.06 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=15.0
Q ss_pred eCCCEEEEe-------------CCEEEECCEEccc
Q 043519 55 KEGDVVEAC-------------EGKLIVNGVVRNK 76 (130)
Q Consensus 55 ~pGD~v~~~-------------~~~l~vng~~~~~ 76 (130)
.|||+++++ +++++|||+.+.+
T Consensus 112 ~PGd~L~i~v~~~~~~~~~~~~~~~~~v~g~~va~ 146 (160)
T 4h4g_A 112 EPGDQLILNVTFERYIRGIWKFKAVAEVDGKVAAE 146 (160)
T ss_dssp CTTCEEEEEEEEEEEETTEEEEEEEEEETTEEEEE
T ss_pred CCCCEEEEEEEEEEeeCCEEEEEEEEEECCEEEEE
Confidence 577776653 4567888887655
No 17
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=40.18 E-value=67 Score=21.88 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=19.3
Q ss_pred CCCCcEEEEecCCcccccccCCCceEEEEEEEeCCCEEEEeC
Q 043519 23 PFANDILIFKSPPLLQEVGYTDDGVYIKGIVAKEGDVVEACE 64 (130)
Q Consensus 23 ~~rGDiVvf~~p~~~~~~~~~~~~~~vKRVig~pGD~v~~~~ 64 (130)
++.|+++.+..+ .+..+.-+|..+.+|+|.+..
T Consensus 113 ~~~G~~~~~~~~---------~G~~~~~~V~~v~~~~V~vD~ 145 (169)
T 4dt4_A 113 PEIGAIMLFTAM---------DGSEMPGVIREINGDSITVDF 145 (169)
T ss_dssp CCTTCEEEEECT---------TSCEEEEEEEEEETTEEEEEC
T ss_pred CCCCcEEEEECC---------CCCEEEEEEEEEcCCEEEEeC
Confidence 455555555543 244556667777777776653
No 18
>3pqh_A Gene product 138; beta-helix, OB-fold, phage baseplate, iron-binding, cell MEM piercing, viral protein; 1.29A {Bacteriophage PHI92}
Probab=37.80 E-value=55 Score=21.53 Aligned_cols=42 Identities=14% Similarity=0.283 Sum_probs=27.4
Q ss_pred EccccCCCCCCCCcEEEEecCCcccccccCCCceEEEE---EE-EeCCCEEEEeCC
Q 043519 14 GSVTYYFREPFANDILIFKSPPLLQEVGYTDDGVYIKG---IV-AKEGDVVEACEG 65 (130)
Q Consensus 14 ~k~~~~~~~~~rGDiVvf~~p~~~~~~~~~~~~~~vKR---Vi-g~pGD~v~~~~~ 65 (130)
+.-.|+...+ .||+.+|..- .....+|| |+ -..+++|.+.+.
T Consensus 27 ~d~ryR~~gL-~GEvaiY~~~---------G~~I~Lk~~giIiid~~~~~v~v~aa 72 (127)
T 3pqh_A 27 NKQTYASFDP-NGNISVYNTQ---------GMKIDMTPNSIVLTDAGGGKLTLQGG 72 (127)
T ss_dssp TTTEEEEECT-TSCEEEEETT---------SCEEEEETTEEEEEETTTEEEEEETT
T ss_pred CCcccccCCC-CCcEEEEcCC---------CCEEEEecCCEEEEecCCCeEEEecc
Confidence 4445666678 9999999873 34455654 33 456777777643
No 19
>3vup_A Beta-1,4-mannanase; TIM barrel, digestive fluid, HYD; 1.05A {Aplysia kurodai}
Probab=35.38 E-value=19 Score=25.54 Aligned_cols=16 Identities=19% Similarity=0.354 Sum_probs=13.6
Q ss_pred EEEEeCCEEEECCEEc
Q 043519 59 VVEACEGKLIVNGVVR 74 (130)
Q Consensus 59 ~v~~~~~~l~vng~~~ 74 (130)
+|+++++++.+||+++
T Consensus 1 rv~v~g~~f~~nG~~~ 16 (351)
T 3vup_A 1 RLHIQNGHFVLNGQRV 16 (351)
T ss_dssp CCEEETTEEEETTEEB
T ss_pred CEEEECCEEEECCEEE
Confidence 3788999999999975
No 20
>2jv8_A Uncharacterized protein NE1242; solution structure, NESG, structural genomics, unknown function, PSI-2; NMR {Nitrosomonas europaea atcc 19718}
Probab=35.18 E-value=43 Score=19.03 Aligned_cols=21 Identities=24% Similarity=0.378 Sum_probs=16.9
Q ss_pred eCCCEEEEeCC-EEEECCEEcc
Q 043519 55 KEGDVVEACEG-KLIVNGVVRN 75 (130)
Q Consensus 55 ~pGD~v~~~~~-~l~vng~~~~ 75 (130)
..|-++.++++ .+.|||+.+.
T Consensus 8 feggtidieddtsltingkeis 29 (73)
T 2jv8_A 8 FEGGTIDIEDDTSLTINGKEIS 29 (73)
T ss_dssp ETTEEEEEETTEEEEETTEECC
T ss_pred ecCCeeeeccCceeEECCEEee
Confidence 46889999875 6999999874
No 21
>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=34.38 E-value=40 Score=22.38 Aligned_cols=31 Identities=13% Similarity=0.054 Sum_probs=21.2
Q ss_pred CCCCCCcEEEEecCCcccccccCCCceEEEEEEEe
Q 043519 21 REPFANDILIFKSPPLLQEVGYTDDGVYIKGIVAK 55 (130)
Q Consensus 21 ~~~~rGDiVvf~~p~~~~~~~~~~~~~~vKRVig~ 55 (130)
+..+.||.++|.++.... ..++...+.|+|+
T Consensus 33 r~mk~GD~~~fYhs~~~~----~~~~~~~~~ivGi 63 (145)
T 2hd9_A 33 SRVKPGDKLVIYVRQEKD----KEGNLLEPKIVGI 63 (145)
T ss_dssp TTCCTTCEEEEEECCEEC----TTCCEECCEEEEE
T ss_pred HhCCCCCEEEEEEccccc----cCCCCCCceEEEE
Confidence 578999999999975200 0244566778875
No 22
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=32.83 E-value=25 Score=20.52 Aligned_cols=15 Identities=27% Similarity=0.282 Sum_probs=10.1
Q ss_pred CCceEEEEEEEeCCC
Q 043519 44 DDGVYIKGIVAKEGD 58 (130)
Q Consensus 44 ~~~~~vKRVig~pGD 58 (130)
.+.+|=-+|.++-|+
T Consensus 19 D~~yYpA~I~si~~~ 33 (67)
T 3p8d_A 19 DCRFYPAKVTAVNKD 33 (67)
T ss_dssp TSCEEEEEEEEECTT
T ss_pred CCCEeeEEEEEECCC
Confidence 355666777777775
No 23
>1yez_A MM1357; MAR30, autostructure, northeast structural genomics, PSI, PR structure initiative, northeast structural genomics consort NESG; NMR {Methanosarcina mazei} SCOP: b.40.4.12
Probab=30.64 E-value=21 Score=20.34 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=12.5
Q ss_pred CceEEEEEEEeCCCEEEEe
Q 043519 45 DGVYIKGIVAKEGDVVEAC 63 (130)
Q Consensus 45 ~~~~vKRVig~pGD~v~~~ 63 (130)
...+|+- |+|||+|.++
T Consensus 37 ~~vfV~~--alPGE~V~v~ 53 (68)
T 1yez_A 37 FVIFVPG--TKVGDEVRIK 53 (68)
T ss_dssp EEEEEES--CCTTCEEEEE
T ss_pred EEEECcC--CCCCCEEEEE
Confidence 3456665 6999999885
No 24
>4b8u_A 3-hydroxydecanoyl-[acyl-carrier-protein] dehydrat; lyase, fatty acid biosynthesis, inhibitor, bacterial virulen discovery; HET: IBK; 2.76A {Pseudomonas aeruginosa}
Probab=29.93 E-value=1.3e+02 Score=20.62 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=20.0
Q ss_pred eEEEEEEEeCCCEEEEeCCEEEECCEEccc
Q 043519 47 VYIKGIVAKEGDVVEACEGKLIVNGVVRNK 76 (130)
Q Consensus 47 ~~vKRVig~pGD~v~~~~~~l~vng~~~~~ 76 (130)
..+||++... ..+.+-++.++|||+.+.+
T Consensus 128 i~i~~v~~~~-~~~~~~dg~~~VDG~~v~e 156 (171)
T 4b8u_A 128 IHIKRTINRS-LVLAIADGTVSVDGREIYS 156 (171)
T ss_dssp EEEEEEECSS-SEEEEEEEEEEETTEEEEE
T ss_pred EEEEEEEeCC-ceEEEEEEEEEECCEEEEE
Confidence 4467776544 3455567899999998755
No 25
>1yvc_A MRR5; structure, autostructure, autoassign, northeast structural genomics, autoqf, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: b.40.4.12
Probab=29.37 E-value=22 Score=20.42 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=11.7
Q ss_pred ceEEEEEEEeCCCEEEEe
Q 043519 46 GVYIKGIVAKEGDVVEAC 63 (130)
Q Consensus 46 ~~~vKRVig~pGD~v~~~ 63 (130)
..+|+- |+|||+|.++
T Consensus 40 ~vfV~~--alPGE~V~v~ 55 (70)
T 1yvc_A 40 VVFVPN--AEKGSVINVK 55 (70)
T ss_dssp EEEETT--CCTTCEEEEE
T ss_pred EEEccC--CCCCCEEEEE
Confidence 345554 8999999885
No 26
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=28.88 E-value=1.2e+02 Score=20.23 Aligned_cols=34 Identities=18% Similarity=0.058 Sum_probs=21.4
Q ss_pred CCCCCcEEEEecCCcccccccCCCceEEEEEEEeCCCEEEEeC
Q 043519 22 EPFANDILIFKSPPLLQEVGYTDDGVYIKGIVAKEGDVVEACE 64 (130)
Q Consensus 22 ~~~rGDiVvf~~p~~~~~~~~~~~~~~vKRVig~pGD~v~~~~ 64 (130)
.++.|+.+.+..+. +..+.-+|..+.+++|.+..
T Consensus 84 ~~~~G~~~~~~~~~---------G~~~~~~V~~v~~~~v~vD~ 117 (158)
T 3cgm_A 84 EVVPGAQFYAQDME---------GNPMPLTVVAVEGEEVTVDF 117 (158)
T ss_dssp CCCTTCEEEEEETT---------TEEEEEEEEEEETTEEEEEC
T ss_pred CCccCCEEEEECCC---------CCEEEEEEEEECCCEEEEeC
Confidence 45666666666542 45556667777777777653
No 27
>3v2d_V 50S ribosomal protein L21; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_P 2hgj_U 2hgq_U 2hgu_U 1vsa_P 2j03_V 2jl6_V 2jl8_V 2v47_V 2v49_V 2wdi_V 2wdj_V 2wdl_V 2wdn_V 2wh2_V 2wh4_V 2wrj_V 2wrl_V 2wro_V 2wrr_V ...
Probab=27.94 E-value=47 Score=20.90 Aligned_cols=21 Identities=5% Similarity=-0.132 Sum_probs=10.9
Q ss_pred cCCEEEEEccccCCCCCCCCcEEEEe
Q 043519 7 VTSLRRKGSVTYYFREPFANDILIFK 32 (130)
Q Consensus 7 ~gd~vlv~k~~~~~~~~~rGDiVvf~ 32 (130)
.||.+.++++. .+.||-|.|+
T Consensus 16 ~Gd~i~vekl~-----~~~G~~v~~~ 36 (101)
T 3v2d_V 16 PGLKLRVEKLD-----AEPGATVELP 36 (101)
T ss_dssp TTCEEEESCCS-----CCTTCEEEEC
T ss_pred CCCEEEECCcC-----CCCCCEEEEE
Confidence 56666665542 3455555543
No 28
>2ii1_A Acetamidase; 10172637, structural genomics, joint center for structural genomics, PSI-2, protein structure initiative, J hydrolase; 1.95A {Bacillus halodurans}
Probab=26.93 E-value=1.3e+02 Score=22.52 Aligned_cols=10 Identities=40% Similarity=0.667 Sum_probs=8.5
Q ss_pred EeCCCEEEEe
Q 043519 54 AKEGDVVEAC 63 (130)
Q Consensus 54 g~pGD~v~~~ 63 (130)
|.|||.+.++
T Consensus 69 AePGD~L~V~ 78 (301)
T 2ii1_A 69 ARRGDMLEIE 78 (301)
T ss_dssp CCTTCEEEEE
T ss_pred CCCCCEEEEE
Confidence 8999988875
No 29
>3r8s_R 50S ribosomal protein L21; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1vs8_R 1vs6_R 2aw4_R 2awb_R 1vt2_R 2i2v_R 2j28_R 2i2t_R* 2qao_R* 2qba_R* 2qbc_R* 2qbe_R 2qbg_R 2qbi_R* 2qbk_R* 2qov_R 2qox_R 2qoz_R* 2qp1_R* 2rdo_R ...
Probab=26.88 E-value=46 Score=20.95 Aligned_cols=22 Identities=9% Similarity=0.010 Sum_probs=14.3
Q ss_pred ccCCEEEEEccccCCCCCCCCcEEEEe
Q 043519 6 VVTSLRRKGSVTYYFREPFANDILIFK 32 (130)
Q Consensus 6 ~~gd~vlv~k~~~~~~~~~rGDiVvf~ 32 (130)
..||.+.++++. .+.||-|.|+
T Consensus 15 ~~Gd~i~vekl~-----~~~G~~v~~~ 36 (103)
T 3r8s_R 15 SEGQTVRLEKLD-----IATGETVEFA 36 (103)
T ss_dssp ETTCEEEESCCC-----SCTTCEEEEC
T ss_pred eCCCEEEECCcC-----CCCCCEEEEe
Confidence 467777777653 3567776665
No 30
>3a2z_A Bifunctional glutathionylspermidine synthetase/AM; GSP amidase, ATP-binding, hydrolase, ligase, multifunctional nucleotide-binding; 1.50A {Escherichia coli} PDB: 3a30_A 3a2y_A*
Probab=26.16 E-value=1.5e+02 Score=20.83 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=21.6
Q ss_pred CCCCCCcEEEEecCCcccccccCCCceEEEEEEEeCCCEEEEe
Q 043519 21 REPFANDILIFKSPPLLQEVGYTDDGVYIKGIVAKEGDVVEAC 63 (130)
Q Consensus 21 ~~~~rGDiVvf~~p~~~~~~~~~~~~~~vKRVig~pGD~v~~~ 63 (130)
..|+.||+++|....... +-+ .|-=|+.+-.++|++.
T Consensus 110 ~~P~~Gdl~V~~~g~~~~----~yG--HVAvV~~V~~~~i~i~ 146 (197)
T 3a2z_A 110 RAPVAGALLIWDKGGEFK----DTG--HVAIITQLHGNKVRIA 146 (197)
T ss_dssp SCCCTTCEEEECSCGGGT----TTC--EEEEEEEECSSEEEEE
T ss_pred CCCCCCeEEEECCCCcCC----CCc--cEEEEEEEcCCeEEEE
Confidence 479999999996631110 112 3333555556677664
No 31
>3r8n_I 30S ribosomal protein S9; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_I 3fih_I* 3iy8_I 3j18_I* 2wwl_I 3oar_I 3oaq_I 3ofb_I 3ofa_I 3ofp_I 3ofx_I 3ofy_I 3ofo_I 3r8o_I 4a2i_I 4gd1_I 4gd2_I 2qal_I* 1p6g_I 1p87_I ...
Probab=25.74 E-value=48 Score=21.80 Aligned_cols=29 Identities=21% Similarity=0.332 Sum_probs=22.4
Q ss_pred CCceEEEEEEEeCCCEEEEeCCEEEECCEEccccc
Q 043519 44 DDGVYIKGIVAKEGDVVEACEGKLIVNGVVRNKDF 78 (130)
Q Consensus 44 ~~~~~vKRVig~pGD~v~~~~~~l~vng~~~~~~~ 78 (130)
..+.-+-||.-.|| +|.+.|||+++.+-|
T Consensus 8 rRKtavArv~l~~G------~G~i~VNg~~l~~yf 36 (127)
T 3r8n_I 8 RRKSSAARVFIKPG------NGKIVINQRSLEQYF 36 (127)
T ss_dssp CCTTCEEEEEEEES------CSCEEETTBCSTTTT
T ss_pred CCeeEEEEEEEEeC------cEEEEECCEeHHHHc
Confidence 45677788888887 488999999987644
No 32
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=25.67 E-value=53 Score=18.91 Aligned_cols=13 Identities=8% Similarity=0.189 Sum_probs=10.5
Q ss_pred CCCCCcEEEEecC
Q 043519 22 EPFANDILIFKSP 34 (130)
Q Consensus 22 ~~~rGDiVvf~~p 34 (130)
.+..||.|.+...
T Consensus 46 ~i~~GD~V~ve~~ 58 (71)
T 1hr0_W 46 RILPGDRVVVEIT 58 (71)
T ss_dssp CCCTTCEEEEECC
T ss_pred CCCCCCEEEEEEE
Confidence 4679999999864
No 33
>3l53_A Putative fumarylacetoacetate isomerase/hydrolase; structural genomics, PSI-2, protein structure initiative; HET: TAR; 2.10A {Oleispira antarctica} PDB: 3v77_A*
Probab=25.28 E-value=40 Score=24.01 Aligned_cols=29 Identities=17% Similarity=0.148 Sum_probs=18.2
Q ss_pred CCCCCCcEEEEecCCcccccccCCCceEEEEEEEeCCCEEEEe
Q 043519 21 REPFANDILIFKSPPLLQEVGYTDDGVYIKGIVAKEGDVVEAC 63 (130)
Q Consensus 21 ~~~~rGDiVvf~~p~~~~~~~~~~~~~~vKRVig~pGD~v~~~ 63 (130)
..++.||+|.-=.|. +.-. -.|||+|+++
T Consensus 180 ~tL~pGDvI~TGTp~---------Gvg~-----l~~GD~v~~~ 208 (224)
T 3l53_A 180 FSLQPGDVILTGTPA---------GVGP-----LEVGDSLSAK 208 (224)
T ss_dssp SCBCTTCEEECCCCS---------CCEE-----CCTTCEEEEE
T ss_pred CCcCCCCEEEcCCCC---------CCEE-----cCCCCEEEEE
Confidence 467888888766653 2211 4588887764
No 34
>4dbf_A 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; oxaloacetate decarboxylase; 1.90A {Corynebacterium glutamicum} PDB: 4dbh_A
Probab=25.26 E-value=54 Score=24.45 Aligned_cols=15 Identities=20% Similarity=0.339 Sum_probs=9.8
Q ss_pred CCCCCCcEEEEecCC
Q 043519 21 REPFANDILIFKSPP 35 (130)
Q Consensus 21 ~~~~rGDiVvf~~p~ 35 (130)
..++.||+|.-=.|.
T Consensus 246 ~tL~pGDvI~TGTP~ 260 (288)
T 4dbf_A 246 MTLLPGDVIATGSPA 260 (288)
T ss_dssp SCBCTTCEEECCCCS
T ss_pred CCcCCCCEEEcCCCC
Confidence 456777777666553
No 35
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.17 E-value=33 Score=19.13 Aligned_cols=11 Identities=64% Similarity=1.177 Sum_probs=9.2
Q ss_pred eCCCEEEEeCC
Q 043519 55 KEGDVVEACEG 65 (130)
Q Consensus 55 ~pGD~v~~~~~ 65 (130)
.+||+|++.+|
T Consensus 9 ~~GD~V~V~~G 19 (59)
T 2e6z_A 9 QPGDNVEVCEG 19 (59)
T ss_dssp CTTSEEEECSS
T ss_pred CCCCEEEEeec
Confidence 58999999865
No 36
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=25.16 E-value=29 Score=21.99 Aligned_cols=13 Identities=38% Similarity=0.434 Sum_probs=11.0
Q ss_pred EeCCEEEECCEEc
Q 043519 62 ACEGKLIVNGVVR 74 (130)
Q Consensus 62 ~~~~~l~vng~~~ 74 (130)
-.+|.+||||+++
T Consensus 59 S~nGtVFVNGqrv 71 (102)
T 3uv0_A 59 ALVGKIFVNDQEE 71 (102)
T ss_dssp ESSSCEEETTEEE
T ss_pred eccCcEEECCEEe
Confidence 4568899999998
No 37
>3j20_K 30S ribosomal protein S9P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.09 E-value=67 Score=21.30 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=19.9
Q ss_pred CceEEEEEEEeCCCEEEEeCCEEEECCEEcc
Q 043519 45 DGVYIKGIVAKEGDVVEACEGKLIVNGVVRN 75 (130)
Q Consensus 45 ~~~~vKRVig~pGD~v~~~~~~l~vng~~~~ 75 (130)
.+.-+-||.-.|| .|.+.|||++++
T Consensus 10 RKtAvArv~l~~G------~G~i~VNg~~l~ 34 (135)
T 3j20_K 10 RKTAIARAVIREG------KGRVRINGKPVE 34 (135)
T ss_dssp ETTEEEEEEEEES------SCCEEETTEEGG
T ss_pred CccEEEEEEEEeC------ceEEEECCeeHH
Confidence 4567778877777 489999999985
No 38
>3u5c_Q RP61R, 40S ribosomal protein S16-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_I 3o30_J 3o2z_J 3u5g_Q 1s1h_I 3jyv_I*
Probab=25.04 E-value=55 Score=21.93 Aligned_cols=27 Identities=22% Similarity=0.161 Sum_probs=21.5
Q ss_pred CCceEEEEEEEeCCCEEEEeCCEEEECCEEccc
Q 043519 44 DDGVYIKGIVAKEGDVVEACEGKLIVNGVVRNK 76 (130)
Q Consensus 44 ~~~~~vKRVig~pGD~v~~~~~~l~vng~~~~~ 76 (130)
..+.-+-||.-.|| +|.+.|||+++++
T Consensus 12 rRKtAvArv~l~~G------~G~i~VNg~~l~~ 38 (143)
T 3u5c_Q 12 KKKSATAVAHVKAG------KGLIKVNGSPITL 38 (143)
T ss_dssp CSTTCEEEEEEEEC------SCCEEETTEETTT
T ss_pred cCcceEEEEEEEeC------ceEEEECCCcHHH
Confidence 45677778888888 4899999999864
No 39
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=24.43 E-value=1.6e+02 Score=19.99 Aligned_cols=34 Identities=15% Similarity=0.178 Sum_probs=26.8
Q ss_pred CCCCCcEEEEecCCcccccccCCCceEEEEEEEeCCCEEEEe
Q 043519 22 EPFANDILIFKSPPLLQEVGYTDDGVYIKGIVAKEGDVVEAC 63 (130)
Q Consensus 22 ~~~rGDiVvf~~p~~~~~~~~~~~~~~vKRVig~pGD~v~~~ 63 (130)
.++.||+++....+ .+..+--+|.++.++++.+.
T Consensus 51 ~~~~g~~c~a~~~~--------d~~wyRa~V~~v~~~~~~V~ 84 (218)
T 2wac_A 51 TPKRGDLVAAQFTL--------DNQWYRAKVERVQGSNATVL 84 (218)
T ss_dssp CCCTTCEEEEECTT--------TCCEEEEEEEEEETTEEEEE
T ss_pred cCCcCCEEEEEECC--------CCeEEEEEEEEecCCeEEEE
Confidence 48899999998864 46778888888877887764
No 40
>2wqt_A 2-keto-4-pentenoate hydratase; lyase, dodecahedral form, aromatic hydrocarbons catabolism; 2.80A {Escherichia coli} PDB: 1sv6_A
Probab=24.25 E-value=60 Score=23.63 Aligned_cols=14 Identities=14% Similarity=0.126 Sum_probs=8.5
Q ss_pred CCCCCCcEEEEecC
Q 043519 21 REPFANDILIFKSP 34 (130)
Q Consensus 21 ~~~~rGDiVvf~~p 34 (130)
..++.||+|.-=.+
T Consensus 221 ~tL~~GdvI~TGT~ 234 (270)
T 2wqt_A 221 EPLRTGDIILTGAL 234 (270)
T ss_dssp CCBCTTCEEEEEES
T ss_pred CCcCCCCEEEcCCC
Confidence 35666776666554
No 41
>3mjj_A Predicted acetamidase/formamidase; beta/alpha structure, hydrolase; 1.99A {Thermoanaerobacter tengcongensis} PDB: 3tkk_A
Probab=24.00 E-value=88 Score=23.54 Aligned_cols=10 Identities=60% Similarity=0.807 Sum_probs=8.4
Q ss_pred EeCCCEEEEe
Q 043519 54 AKEGDVVEAC 63 (130)
Q Consensus 54 g~pGD~v~~~ 63 (130)
|.|||++.++
T Consensus 71 AePGD~L~V~ 80 (301)
T 3mjj_A 71 AKEGDVLKVK 80 (301)
T ss_dssp CCTTCEEEEE
T ss_pred CCCCCEEEEE
Confidence 8899988875
No 42
>2vqe_I 30S ribosomal protein S9, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.14.1.1 PDB: 1gix_L* 1hnw_I* 1hnx_I* 1hnz_I* 1hr0_I 1i94_I* 1i95_I* 1i96_I* 1i97_I* 1ibk_I* 1ibl_I* 1ibm_I 1j5e_I 1jgo_L* 1jgp_L* 1jgq_L* 1ml5_L* 1n32_I* 1n33_I* 1n34_I ...
Probab=23.72 E-value=31 Score=22.72 Aligned_cols=29 Identities=28% Similarity=0.407 Sum_probs=22.3
Q ss_pred CCceEEEEEEEeCCCEEEEeCCEEEECCEEccccc
Q 043519 44 DDGVYIKGIVAKEGDVVEACEGKLIVNGVVRNKDF 78 (130)
Q Consensus 44 ~~~~~vKRVig~pGD~v~~~~~~l~vng~~~~~~~ 78 (130)
..+.-+-||.-.||. |.+.|||+++.+-|
T Consensus 9 rRKtavArv~l~~G~------G~i~VNg~~l~~yf 37 (128)
T 2vqe_I 9 RRKEAVARVFLRPGN------GKVTVNGQDFNEYF 37 (128)
T ss_dssp EETTEEEEEEEEESS------CCEEESSSBHHHHS
T ss_pred cCCCEEEEEEEEcCc------eEEEECCCcHHHHc
Confidence 346778888888884 89999999986533
No 43
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}
Probab=23.41 E-value=57 Score=21.63 Aligned_cols=12 Identities=25% Similarity=0.180 Sum_probs=10.8
Q ss_pred CCCCCCcEEEEe
Q 043519 21 REPFANDILIFK 32 (130)
Q Consensus 21 ~~~~rGDiVvf~ 32 (130)
+..+.||.++|.
T Consensus 36 r~Mk~GD~~~fY 47 (147)
T 2p5d_A 36 NKVKVGDKLIIY 47 (147)
T ss_dssp TTCCTTCEEEEE
T ss_pred HhCCCCCEEEEE
Confidence 478999999999
No 44
>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, structural GE NPPSFA; 2.20A {Thermus thermophilus}
Probab=23.34 E-value=62 Score=23.61 Aligned_cols=14 Identities=14% Similarity=0.180 Sum_probs=8.8
Q ss_pred CCCCCCcEEEEecC
Q 043519 21 REPFANDILIFKSP 34 (130)
Q Consensus 21 ~~~~rGDiVvf~~p 34 (130)
..++.||+|.-=.|
T Consensus 217 ~tL~pGDvI~TGTp 230 (264)
T 2dfu_A 217 MTLEPLDVVLTGTP 230 (264)
T ss_dssp SCBCTTCEEECCCC
T ss_pred CCcCCCCEEEeCCC
Confidence 45677777665444
No 45
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti}
Probab=23.23 E-value=76 Score=23.95 Aligned_cols=30 Identities=10% Similarity=0.087 Sum_probs=21.6
Q ss_pred cccccCCEEEEEccccCCCCCCCCcEEEEecCC
Q 043519 3 RAYVVTSLRRKGSVTYYFREPFANDILIFKSPP 35 (130)
Q Consensus 3 Ptl~~gd~vlv~k~~~~~~~~~rGDiVvf~~p~ 35 (130)
||=.+||++.-.++ ...++.||+++|..-.
T Consensus 293 p~C~s~D~l~~~~~---~~~l~~GD~l~~~~~G 322 (365)
T 3mt1_A 293 KSCLAGDVFGEFRF---AEELKVGDRISFQDAA 322 (365)
T ss_dssp SSCCSSCEEEEEEE---SSCCCTTCEEEESSCC
T ss_pred CCCCccCEEccccc---CCCCCCCCEEEEeccc
Confidence 56668898864332 3468999999998754
No 46
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=22.77 E-value=52 Score=19.47 Aligned_cols=10 Identities=20% Similarity=0.278 Sum_probs=4.6
Q ss_pred CCCcEEEEec
Q 043519 24 FANDILIFKS 33 (130)
Q Consensus 24 ~rGDiVvf~~ 33 (130)
+.||+|+...
T Consensus 37 ~vGD~VLVH~ 46 (75)
T 2z1c_A 37 KPGDWVIVHT 46 (75)
T ss_dssp CTTCEEEEET
T ss_pred CCCCEEEEec
Confidence 3455554443
No 47
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=22.49 E-value=1.3e+02 Score=17.82 Aligned_cols=33 Identities=12% Similarity=0.206 Sum_probs=25.1
Q ss_pred CCCCCcEEEEecCCcccccccCCCceEEEEEEEeCCC-EEEE
Q 043519 22 EPFANDILIFKSPPLLQEVGYTDDGVYIKGIVAKEGD-VVEA 62 (130)
Q Consensus 22 ~~~rGDiVvf~~p~~~~~~~~~~~~~~vKRVig~pGD-~v~~ 62 (130)
.++.||+++...++ .+..+--+|.++.++ ++.+
T Consensus 27 ~~~~G~~c~a~~~~--------d~~wyRA~I~~~~~~~~~~V 60 (94)
T 3fdr_A 27 TVHVGDIVAAPLPT--------NGSWYRARVLGTLENGNLDL 60 (94)
T ss_dssp CCCTTCEEEEEETT--------TTEEEEEEEEEECTTSCEEE
T ss_pred CCCCCCEEEEEECC--------CCeEEEEEEEEECCCCeEEE
Confidence 58999999998764 577888888888764 5544
No 48
>3rr6_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A
Probab=22.20 E-value=49 Score=24.32 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=17.3
Q ss_pred CCCCCCcEEEEecCCcccccccCCCceEEEEEEEeCCCEEEEe
Q 043519 21 REPFANDILIFKSPPLLQEVGYTDDGVYIKGIVAKEGDVVEAC 63 (130)
Q Consensus 21 ~~~~rGDiVvf~~p~~~~~~~~~~~~~~vKRVig~pGD~v~~~ 63 (130)
..++.||+|.-=.|. +.-. -.|||+|+++
T Consensus 221 ~tL~pGDvI~TGTp~---------Gvg~-----l~~GD~v~v~ 249 (265)
T 3rr6_A 221 MTLLPGDVILTGTPE---------GVGP-----IVDGDTVSVT 249 (265)
T ss_dssp SCBCTTCEEECCCCS---------CCEE-----CCTTCEEEEE
T ss_pred CCcCCCCEEEeCCCC---------Ccee-----CCCCCEEEEE
Confidence 357778877765553 2211 4578877664
No 49
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=21.98 E-value=48 Score=22.78 Aligned_cols=16 Identities=13% Similarity=-0.114 Sum_probs=13.3
Q ss_pred CccccccCCEEEEEcc
Q 043519 1 MLRAYVVTSLRRKGSV 16 (130)
Q Consensus 1 M~Ptl~~gd~vlv~k~ 16 (130)
|.|.|+.||.|.+.-.
T Consensus 48 ~r~~l~~GDlV~ArV~ 63 (175)
T 2ja9_A 48 NRPTLQVGDLVYARVC 63 (175)
T ss_dssp SCCCCCTTCEEEEEEE
T ss_pred hhccCCCCCEEEEEEE
Confidence 7899999999997643
No 50
>1wzo_A HPCE; structural genomics, riken structural genomics/proteom initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus thermophilus}
Probab=21.87 E-value=1.3e+02 Score=21.41 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=17.7
Q ss_pred CCCCCCcEEEEecCCcccccccCCCceEEEEEEEeCCCEEEEe
Q 043519 21 REPFANDILIFKSPPLLQEVGYTDDGVYIKGIVAKEGDVVEAC 63 (130)
Q Consensus 21 ~~~~rGDiVvf~~p~~~~~~~~~~~~~~vKRVig~pGD~v~~~ 63 (130)
..++.||+|.-=.|. +... -.|||+|++.
T Consensus 203 ~tL~pGDvI~TGTp~---------gvg~-----l~~GD~v~~~ 231 (246)
T 1wzo_A 203 MTLEPYDVLLTGTPK---------GISQ-----VRPGDVMRLE 231 (246)
T ss_dssp SCBCTTCEEECCCCC---------CSCE-----ECTTCEEEEE
T ss_pred CCcCCCCEEEeCCCC---------CceE-----CCCCCEEEEE
Confidence 467888877655543 2222 4588888764
No 51
>2kzv_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; NMR {Chromobacterium violaceum}
Probab=21.84 E-value=30 Score=21.33 Aligned_cols=10 Identities=20% Similarity=-0.018 Sum_probs=8.9
Q ss_pred CCCCCCcccc
Q 043519 97 NSYDLLVCLD 106 (130)
Q Consensus 97 ~S~DSR~~G~ 106 (130)
-+||.|.||+
T Consensus 41 PdFD~RnYGy 50 (92)
T 2kzv_A 41 PSFDPRNWGH 50 (92)
T ss_dssp TTCCTTTTCS
T ss_pred cCCCccccCc
Confidence 6899999995
No 52
>1o9y_A HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae} SCOP: b.139.1.1
Probab=21.77 E-value=91 Score=18.47 Aligned_cols=12 Identities=25% Similarity=0.066 Sum_probs=8.3
Q ss_pred CCCCCcEEEEec
Q 043519 22 EPFANDILIFKS 33 (130)
Q Consensus 22 ~~~rGDiVvf~~ 33 (130)
+++.||++-+..
T Consensus 35 ~L~~GdVi~Ld~ 46 (84)
T 1o9y_A 35 RLDAGTILEVTG 46 (84)
T ss_dssp TCCTTCEEEECS
T ss_pred cCCCCCEEEeCC
Confidence 467777777764
No 53
>3uep_A YSCQ-C, type III secretion protein; cytosol, protein transport; 2.25A {Yersinia pseudotuberculosis}
Probab=21.73 E-value=62 Score=19.91 Aligned_cols=12 Identities=0% Similarity=0.019 Sum_probs=7.5
Q ss_pred CCCCCcEEEEec
Q 043519 22 EPFANDILIFKS 33 (130)
Q Consensus 22 ~~~rGDiVvf~~ 33 (130)
+++.||++.+..
T Consensus 39 ~L~~GdVI~Ld~ 50 (96)
T 3uep_A 39 SLEPGSLIDLTT 50 (96)
T ss_dssp HCCTTCEEEEEE
T ss_pred cCCCCCEEEeCC
Confidence 356677766664
No 54
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV}
Probab=21.43 E-value=91 Score=24.27 Aligned_cols=30 Identities=7% Similarity=0.038 Sum_probs=21.9
Q ss_pred cccccCCEEEEEccccCCCCCCCCcEEEEecCC
Q 043519 3 RAYVVTSLRRKGSVTYYFREPFANDILIFKSPP 35 (130)
Q Consensus 3 Ptl~~gd~vlv~k~~~~~~~~~rGDiVvf~~p~ 35 (130)
||=.+||++.-+... ..++.||+++|..-.
T Consensus 366 p~C~s~D~l~~~~~l---p~l~~GD~l~~~~~G 395 (443)
T 3vab_A 366 PVCETGDYLGLDREV---AKPAPGDLIAICTTG 395 (443)
T ss_dssp SSSSTTCEEEEEEEE---ECCCTTCEEEEESCT
T ss_pred cCCCCCCEEeeccCc---CCCCCCCEEEEeCCC
Confidence 556678888765432 258999999998865
No 55
>1vzm_A Osteocalcin; calcium-binding protein, bone GLA protein, BGP, hydroxyapatite, gamma carboxyl glutamic acid, vitamin K, bone, mineralization; HET: CGU; 1.4A {Argyrosomus regius}
Probab=21.32 E-value=14 Score=19.98 Aligned_cols=7 Identities=0% Similarity=-0.553 Sum_probs=3.8
Q ss_pred Ccccccc
Q 043519 102 LVCLDEL 108 (130)
Q Consensus 102 R~~G~V~ 108 (130)
||||++|
T Consensus 38 ryfG~~~ 44 (45)
T 1vzm_A 38 AFYGPIP 44 (45)
T ss_dssp HHHCSCC
T ss_pred HHcCCCC
Confidence 4556554
No 56
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=21.24 E-value=1.8e+02 Score=19.01 Aligned_cols=34 Identities=9% Similarity=-0.206 Sum_probs=26.1
Q ss_pred CCCCCcEEEEecCCcccccccCCCceEEEEEEEeCCCEEEEeC
Q 043519 22 EPFANDILIFKSPPLLQEVGYTDDGVYIKGIVAKEGDVVEACE 64 (130)
Q Consensus 22 ~~~rGDiVvf~~p~~~~~~~~~~~~~~vKRVig~pGD~v~~~~ 64 (130)
.++.|+.+.+..+. +..+.-+|..+.+|+|.+..
T Consensus 93 ~~~~G~~~~~~~~~---------G~~~~~~V~~v~~~~v~vD~ 126 (151)
T 2kr7_A 93 ELEKGMSVFGQTED---------NQTIQAIIKDFSATHVMVDY 126 (151)
T ss_dssp CCCTTCEEEEEETT---------TEEEEEEEEEECSSEEEEEE
T ss_pred CCccCCEEEEECCC---------CCEEEEEEEEECCCEEEEEC
Confidence 57888888887753 45677788888888888864
No 57
>3bbn_I Ribosomal protein S9; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=20.64 E-value=58 Score=23.06 Aligned_cols=28 Identities=29% Similarity=0.336 Sum_probs=21.7
Q ss_pred CCceEEEEEEEeCCCEEEEeCCEEEECCEEcccc
Q 043519 44 DDGVYIKGIVAKEGDVVEACEGKLIVNGVVRNKD 77 (130)
Q Consensus 44 ~~~~~vKRVig~pGD~v~~~~~~l~vng~~~~~~ 77 (130)
..+.-+-||.-.||. |.+.|||+++.+-
T Consensus 77 RRKtAvArV~l~~G~------G~I~VNg~~l~~Y 104 (197)
T 3bbn_I 77 RRKCAIARVVLQEGT------GKFIINYRDAKEY 104 (197)
T ss_dssp EETTEEEEEEEEESS------CCEEETTEEHHHH
T ss_pred eCCceEEEEEEEcCc------eeEEECCCcHHHH
Confidence 346677788877774 8999999998663
No 58
>2zkq_i 40S ribosomal protein S16E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=20.30 E-value=62 Score=21.77 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=20.5
Q ss_pred CCceEEEEEEEeCCCEEEEeCCEEEECCEEc
Q 043519 44 DDGVYIKGIVAKEGDVVEACEGKLIVNGVVR 74 (130)
Q Consensus 44 ~~~~~vKRVig~pGD~v~~~~~~l~vng~~~ 74 (130)
..+.-+-||.-.||. |.+.|||+++
T Consensus 15 rRKtAvArv~l~~G~------G~i~VNg~~l 39 (146)
T 2zkq_i 15 RKKTATAVAHCKRGN------GLIKVNGRPL 39 (146)
T ss_dssp BCSSCEEEEEEEESS------SCEEETTEEH
T ss_pred eCCCeEEEEEEEcCC------eeEEEcCcCH
Confidence 456778888888874 8999999998
No 59
>4awe_A Endo-beta-D-1,4-mannanase; hydrolase, endo-mannanase, glycosyl hydrolase, GH5; HET: NAG; 1.40A {Neurospora sitophila}
Probab=20.23 E-value=57 Score=23.18 Aligned_cols=16 Identities=13% Similarity=0.077 Sum_probs=12.9
Q ss_pred EEEEeCCEEEECCEEc
Q 043519 59 VVEACEGKLIVNGVVR 74 (130)
Q Consensus 59 ~v~~~~~~l~vng~~~ 74 (130)
-|+++++++.+||+++
T Consensus 6 Fv~~~g~~f~~nG~~~ 21 (387)
T 4awe_A 6 FVTTEGDHFKLDGKDF 21 (387)
T ss_dssp CCEEETTEEEETTEEC
T ss_pred CEEEECCEEEECCEEE
Confidence 3677888999999975
Done!