Query 043520
Match_columns 159
No_of_seqs 136 out of 1064
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 05:53:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043520.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043520hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01657 Stress-antifung: Salt 100.0 8.2E-29 1.8E-33 176.1 8.2 102 28-133 1-106 (106)
2 PF13956 Ibs_toxin: Toxin Ibs, 58.1 5.8 0.00013 19.3 0.9 15 2-16 3-17 (19)
3 PRK10259 hypothetical protein; 45.7 36 0.00079 23.2 3.6 36 45-85 47-82 (86)
4 PF08194 DIM: DIM protein; In 27.6 64 0.0014 18.5 2.1 11 22-32 23-33 (36)
5 PRK02898 cobalt transport prot 27.0 47 0.001 23.4 1.7 17 1-17 4-20 (100)
6 PF10917 DUF2708: Protein of u 24.6 29 0.00062 20.6 0.3 16 1-16 1-16 (43)
7 PF11153 DUF2931: Protein of u 24.5 76 0.0016 24.8 2.8 19 1-20 1-19 (216)
8 PF10717 ODV-E18: Occlusion-de 24.2 64 0.0014 22.0 2.0 15 3-17 30-44 (85)
9 PF15240 Pro-rich: Proline-ric 23.8 61 0.0013 25.2 2.0 13 4-16 2-14 (179)
10 PF07599 DUF1563: Protein of u 22.1 55 0.0012 19.0 1.1 11 1-11 1-11 (43)
11 COG4537 ComGC Competence prote 21.9 70 0.0015 22.7 1.8 13 4-16 23-35 (107)
12 PF07403 DUF1505: Protein of u 21.8 69 0.0015 23.1 1.8 13 78-90 78-90 (114)
13 TIGR02052 MerP mercuric transp 21.1 65 0.0014 20.0 1.5 16 2-17 3-18 (92)
14 PF07423 DUF1510: Protein of u 20.5 70 0.0015 25.6 1.8 16 1-16 16-31 (217)
No 1
>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function. The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.
Probab=99.95 E-value=8.2e-29 Score=176.11 Aligned_cols=102 Identities=42% Similarity=0.841 Sum_probs=77.8
Q ss_pred ccCCC-C--CCc-CCCcHHHHHHHHHHHHHHHHhccCCCCccccCeeeeecCCCCCeeEEeccccCCCCccchHHHHHHH
Q 043520 28 YHNCP-S--KNF-TPNSAYQSNLNLLLSTLRSNATRGSSDKFSKGFYNTTTGHEPNKVYGLFLCRGDFGAETCQNCVSVA 103 (159)
Q Consensus 28 ~~~C~-~--~~~-~~~s~f~~~l~~ll~~L~~~a~~~~~~~~~~~f~~~~~g~~~~~vYglaqC~~Dls~~~C~~Cl~~a 103 (159)
|+.|+ + +++ +++++|+.+++.+|..|+..++...+ .+|++++.|.+++++|||+||++|+++++|+.||+.+
T Consensus 1 ~~~Cs~~~~~~~~~~~~~f~~~l~~ll~~l~~~a~~~~~----~~f~~~~~~~~~~~vYgl~qC~~Dls~~dC~~Cl~~a 76 (106)
T PF01657_consen 1 WHFCSSNTNNNYTTDNSTFEQNLNSLLSSLVSNAASSSS----KGFATGSAGSGPDTVYGLAQCRGDLSPSDCRACLADA 76 (106)
T ss_dssp ---E---SSB----TT-THHHHHHHHHHHHHHHGGGTT-----TEEEEEE--ST---EEEEEEE-TTS-HHHHHHHHHHH
T ss_pred CCcCCCCCCCCcCCCCchHHHHHHHHHHHHHHHHhhccc----cCcEEeecCCCCCeEEEEEEcCCCCChhhhHHHHHHH
Confidence 78899 3 566 57888999999999999999875421 5899998888889999999999999999999999999
Q ss_pred HHHhhhhCCCCceEEEEcCceEEEEcCccc
Q 043520 104 TSDTAQLCPFGKENTIGYEECLLRYSNISF 133 (159)
Q Consensus 104 ~~~~~~~C~~~~ga~i~~~~C~lRYs~~~F 133 (159)
+..++++|++++||+||+++|+||||+++|
T Consensus 77 ~~~~~~~C~~~~g~~v~~~~C~lRY~~~~F 106 (106)
T PF01657_consen 77 VANISSCCPGSRGGRVWYDSCFLRYENYPF 106 (106)
T ss_dssp HCCHHHHTTSBSSEEEEESSEEEEEESS--
T ss_pred HHHHHHhCCCCceEEEECCCEEEEEECCCC
Confidence 999999999999999999999999999998
No 2
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=58.09 E-value=5.8 Score=19.30 Aligned_cols=15 Identities=13% Similarity=0.498 Sum_probs=7.3
Q ss_pred chHHHHHHHHHHHhh
Q 043520 2 NVILVFVTALSVQIS 16 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~ 16 (159)
-..+|++++++++++
T Consensus 3 k~vIIlvvLLliSf~ 17 (19)
T PF13956_consen 3 KLVIILVVLLLISFP 17 (19)
T ss_pred eehHHHHHHHhcccc
Confidence 334455555555544
No 3
>PRK10259 hypothetical protein; Provisional
Probab=45.66 E-value=36 Score=23.24 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhccCCCCccccCeeeeecCCCCCeeEEec
Q 043520 45 NLNLLLSTLRSNATRGSSDKFSKGFYNTTTGHEPNKVYGLF 85 (159)
Q Consensus 45 ~l~~ll~~L~~~a~~~~~~~~~~~f~~~~~g~~~~~vYgla 85 (159)
++..+-..|..++-... -.+|.-....++++.||-+
T Consensus 47 s~~d~~~~La~KAd~~G-----A~~YrIi~a~~~n~~~~tA 82 (86)
T PRK10259 47 TLDALEAKLAEKAAAAG-----ASGYSITSATNNNKLSGTA 82 (86)
T ss_pred CHHHHHHHHHHHHHHcC-----CCEEEEEEecCCCcEEEEE
Confidence 56666667766664332 2344433334457777755
No 4
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=27.64 E-value=64 Score=18.48 Aligned_cols=11 Identities=18% Similarity=0.229 Sum_probs=6.2
Q ss_pred CCCcccccCCC
Q 043520 22 DKPTYIYHNCP 32 (159)
Q Consensus 22 ~~p~~~~~~C~ 32 (159)
.....++..|-
T Consensus 23 pG~ViING~C~ 33 (36)
T PF08194_consen 23 PGNVIINGKCI 33 (36)
T ss_pred CCeEEECceee
Confidence 44456666663
No 5
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=26.97 E-value=47 Score=23.42 Aligned_cols=17 Identities=24% Similarity=0.462 Sum_probs=11.4
Q ss_pred CchHHHHHHHHHHHhhc
Q 043520 1 MNVILVFVTALSVQISL 17 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (159)
+|++|+++++++..+++
T Consensus 4 ~~~~L~~~vi~l~~~pl 20 (100)
T PRK02898 4 KNLLLLLLVILLAVLPL 20 (100)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47777777776665553
No 6
>PF10917 DUF2708: Protein of unknown function (DUF2708); InterPro: IPR024415 This entry represents fungus-induced proteins which may have role in hypoxia response[].
Probab=24.62 E-value=29 Score=20.56 Aligned_cols=16 Identities=50% Similarity=0.459 Sum_probs=11.3
Q ss_pred CchHHHHHHHHHHHhh
Q 043520 1 MNVILVFVTALSVQIS 16 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (159)
||++-+|++++|...+
T Consensus 1 MN~YsvfvFaiLaiss 16 (43)
T PF10917_consen 1 MNVYSVFVFAILAISS 16 (43)
T ss_pred CceeeehHHHHhhhhc
Confidence 8998777766665544
No 7
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=24.51 E-value=76 Score=24.80 Aligned_cols=19 Identities=21% Similarity=0.308 Sum_probs=10.5
Q ss_pred CchHHHHHHHHHHHhhcccc
Q 043520 1 MNVILVFVTALSVQISLTKA 20 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (159)
||-+++++ ++|++.++.+.
T Consensus 1 mk~i~~l~-l~lll~~C~~~ 19 (216)
T PF11153_consen 1 MKKILLLL-LLLLLTGCSTN 19 (216)
T ss_pred ChHHHHHH-HHHHHHhhcCC
Confidence 77766666 44445555433
No 8
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=24.22 E-value=64 Score=21.99 Aligned_cols=15 Identities=13% Similarity=0.425 Sum_probs=8.1
Q ss_pred hHHHHHHHHHHHhhc
Q 043520 3 VILVFVTALSVQISL 17 (159)
Q Consensus 3 ~~~~~~~~~~~~~~~ 17 (159)
|++.++|+.|+.+.+
T Consensus 30 ILivLVIIiLlImlf 44 (85)
T PF10717_consen 30 ILIVLVIIILLIMLF 44 (85)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555554
No 9
>PF15240 Pro-rich: Proline-rich
Probab=23.84 E-value=61 Score=25.21 Aligned_cols=13 Identities=23% Similarity=0.485 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHhh
Q 043520 4 ILVFVTALSVQIS 16 (159)
Q Consensus 4 ~~~~~~~~~~~~~ 16 (159)
|||||++.||.|+
T Consensus 2 LlVLLSvALLALS 14 (179)
T PF15240_consen 2 LLVLLSVALLALS 14 (179)
T ss_pred hhHHHHHHHHHhh
Confidence 4445555555555
No 10
>PF07599 DUF1563: Protein of unknown function (DUF1563); InterPro: IPR011457 This is a small family of short hypothetical proteins in Leptospira interrogans.
Probab=22.14 E-value=55 Score=19.03 Aligned_cols=11 Identities=45% Similarity=0.540 Sum_probs=6.5
Q ss_pred CchHHHHHHHH
Q 043520 1 MNVILVFVTAL 11 (159)
Q Consensus 1 ~~~~~~~~~~~ 11 (159)
|||+|+-.+++
T Consensus 1 mniiL~~FFLL 11 (43)
T PF07599_consen 1 MNIILIGFFLL 11 (43)
T ss_pred CcchhhHHHHH
Confidence 78876544433
No 11
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=21.87 E-value=70 Score=22.69 Aligned_cols=13 Identities=23% Similarity=0.350 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHhh
Q 043520 4 ILVFVTALSVQIS 16 (159)
Q Consensus 4 ~~~~~~~~~~~~~ 16 (159)
++|+++++|+.++
T Consensus 23 LlIISiLlLl~iP 35 (107)
T COG4537 23 LLIISILLLLFIP 35 (107)
T ss_pred HHHHHHHHHHHcc
Confidence 4444444555554
No 12
>PF07403 DUF1505: Protein of unknown function (DUF1505); InterPro: IPR009981 This family consists of several uncharacterised Caenorhabditis elegans proteins of around 115 resides in length. Members of this family contain 6 highly conserved cysteine residues. The function of this family is unknown.
Probab=21.80 E-value=69 Score=23.10 Aligned_cols=13 Identities=15% Similarity=0.416 Sum_probs=10.2
Q ss_pred CCeeEEeccccCC
Q 043520 78 PNKVYGLFLCRGD 90 (159)
Q Consensus 78 ~~~vYglaqC~~D 90 (159)
.+..-|.+||+..
T Consensus 78 ~dp~NGVaqCtKT 90 (114)
T PF07403_consen 78 EDPLNGVAQCTKT 90 (114)
T ss_pred CCCCCCccccccC
Confidence 3677899999864
No 13
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=21.09 E-value=65 Score=20.04 Aligned_cols=16 Identities=0% Similarity=0.058 Sum_probs=11.3
Q ss_pred chHHHHHHHHHHHhhc
Q 043520 2 NVILVFVTALSVQISL 17 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~ 17 (159)
|++-+|+++++++.+.
T Consensus 3 ~~~~~~~~~~~~~~~~ 18 (92)
T TIGR02052 3 KLATLLALFVLTSLPA 18 (92)
T ss_pred hHHHHHHHHHHhcchh
Confidence 6777777777777663
No 14
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=20.50 E-value=70 Score=25.59 Aligned_cols=16 Identities=19% Similarity=0.432 Sum_probs=8.5
Q ss_pred CchHHHHHHHHHHHhh
Q 043520 1 MNVILVFVTALSVQIS 16 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (159)
+||++.++++|.+.++
T Consensus 16 LNiaI~IV~lLIiiva 31 (217)
T PF07423_consen 16 LNIAIGIVSLLIIIVA 31 (217)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4776655555444433
Done!