Query 043520
Match_columns 159
No_of_seqs 136 out of 1064
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 09:44:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043520.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043520hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a2e_A Ginkbilobin-2; domain 2 100.0 7.3E-32 2.5E-36 191.9 10.3 106 23-133 2-108 (108)
2 2e79_A Ginkbilobin-2; DUF26 fo 100.0 5.8E-31 2E-35 187.1 10.4 106 23-133 2-108 (108)
3 1gff_3 Bacteriophage G4 capsid 16.7 59 0.002 16.1 1.1 12 112-123 10-21 (26)
4 1weo_A Cellulose synthase, cat 15.2 38 0.0013 22.5 0.3 29 92-130 42-70 (93)
5 2xk0_A Polycomb protein PCL; t 14.8 80 0.0027 19.8 1.7 12 121-132 41-52 (69)
6 2ljs_A Trypsin inhibitor 3; be 11.0 64 0.0022 16.7 0.3 8 84-91 8-15 (30)
7 3p8d_A Medulloblastoma antigen 9.2 97 0.0033 19.2 0.7 15 121-135 10-24 (67)
8 1g25_A CDK-activating kinase a 9.1 1.3E+02 0.0043 17.3 1.2 20 94-113 29-48 (65)
9 2lif_A Core protein P21; signa 11.9 73 0.0025 16.3 0.0 10 7-16 9-18 (27)
10 3arc_Z Photosystem II reaction 8.7 2.1E+02 0.0071 17.5 2.1 16 1-16 1-16 (62)
No 1
>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba}
Probab=99.97 E-value=7.3e-32 Score=191.91 Aligned_cols=106 Identities=19% Similarity=0.485 Sum_probs=97.1
Q ss_pred CCcccccCCCCCCcCCCcHHHHHHHHHHHHHHHHhccCCCCccccCeeeeecC-CCCCeeEEeccccCCCCccchHHHHH
Q 043520 23 KPTYIYHNCPSKNFTPNSAYQSNLNLLLSTLRSNATRGSSDKFSKGFYNTTTG-HEPNKVYGLFLCRGDFGAETCQNCVS 101 (159)
Q Consensus 23 ~p~~~~~~C~~~~~~~~s~f~~~l~~ll~~L~~~a~~~~~~~~~~~f~~~~~g-~~~~~vYglaqC~~Dls~~~C~~Cl~ 101 (159)
++.++++.|+.++++++++|++||+.||..|+.+++.++ .+|++...| .++++||||+||+||+++++|+.||+
T Consensus 2 ~t~~v~~~Cn~~~~t~~s~f~~nl~~ll~~L~~~a~~s~-----~~~~t~~~~~~~~~~vygl~qC~~Dls~~~C~~Cl~ 76 (108)
T 3a2e_A 2 NTAFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFSG-----YDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLS 76 (108)
T ss_dssp CCCEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGTT-----SEEEEEECCSTTCCCEEEEEEECTTSCHHHHHHHHH
T ss_pred CcceeeeecCCCccCCCChHHHHHHHHHHHHHhhCcccc-----CCceEeeccCCCCceEEEEEEEcCCCCHHHHHHHHH
Confidence 567899999889999999999999999999999987654 567777665 45689999999999999999999999
Q ss_pred HHHHHhhhhCCCCceEEEEcCceEEEEcCccc
Q 043520 102 VATSDTAQLCPFGKENTIGYEECLLRYSNISF 133 (159)
Q Consensus 102 ~a~~~~~~~C~~~~ga~i~~~~C~lRYs~~~F 133 (159)
.|+.+++++||+++||+||+++|+||||+++|
T Consensus 77 ~a~~~~~~~C~~~~g~~i~~~~C~lRY~~~~F 108 (108)
T 3a2e_A 77 NLVNRIFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HHHTTHHHHTTSBSSEEEEETTEEEEEESSCC
T ss_pred HHHHHHHHHCCCCceEEEECCCEEEEEeCCcC
Confidence 99999999999999999999999999999998
No 2
>2e79_A Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lectin, plant protein, sugar binding protein; 2.38A {Ginkgo biloba} PDB: 3a2e_A
Probab=99.97 E-value=5.8e-31 Score=187.14 Aligned_cols=106 Identities=19% Similarity=0.483 Sum_probs=96.8
Q ss_pred CCcccccCCCCCCcCCCcHHHHHHHHHHHHHHHHhccCCCCccccCeeeeecCCCC-CeeEEeccccCCCCccchHHHHH
Q 043520 23 KPTYIYHNCPSKNFTPNSAYQSNLNLLLSTLRSNATRGSSDKFSKGFYNTTTGHEP-NKVYGLFLCRGDFGAETCQNCVS 101 (159)
Q Consensus 23 ~p~~~~~~C~~~~~~~~s~f~~~l~~ll~~L~~~a~~~~~~~~~~~f~~~~~g~~~-~~vYglaqC~~Dls~~~C~~Cl~ 101 (159)
+..++++.|++++++++++|+++|+.||..|+.+++.++ .+|++++.|.++ ++||||+||+||+++++|+.||+
T Consensus 2 ~t~~~~~~C~~~~~~~~s~f~~nl~~ll~~L~~~a~~~~-----~~f~~~~~g~~~~~~vYgl~qC~~Dls~~~C~~Cl~ 76 (108)
T 2e79_A 2 NTAFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFSG-----YDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLS 76 (108)
T ss_dssp CCCEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGTT-----SEEEEEECCCTTCCCEEEEEEECTTSCHHHHHHHHH
T ss_pred CceeeeeeCCCCeeCCcchHHHHHHHHHHHHHHHhhcCC-----cccEEEecCCCCCCcEEEEEecCCCCChHHHHHHHH
Confidence 345689999989999999999999999999999887543 479888877655 79999999999999999999999
Q ss_pred HHHHHhhhhCCCCceEEEEcCceEEEEcCccc
Q 043520 102 VATSDTAQLCPFGKENTIGYEECLLRYSNISF 133 (159)
Q Consensus 102 ~a~~~~~~~C~~~~ga~i~~~~C~lRYs~~~F 133 (159)
.++.++++.|++++||+||+++|+||||+++|
T Consensus 77 ~a~~~~~~~C~~~~g~~i~~~~C~lRy~~~~F 108 (108)
T 2e79_A 77 NLVNRIFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HHHTTHHHHTTSBSSEEEEESSEEEEEESSCC
T ss_pred HHHHHHHHhCCCCceEEEECCCeEEEEeCCCC
Confidence 99999999999999999999999999999987
No 3
>1gff_3 Bacteriophage G4 capsid proteins GPF, GPG, GPJ; coat protein, icosahedral virus; 3.00A {Enterobacteria phage G4}
Probab=16.69 E-value=59 Score=16.14 Aligned_cols=12 Identities=17% Similarity=0.038 Sum_probs=8.6
Q ss_pred CCCceEEEEcCc
Q 043520 112 PFGKENTIGYEE 123 (159)
Q Consensus 112 ~~~~ga~i~~~~ 123 (159)
..++|++.||..
T Consensus 10 ~r~kgarlwyvg 21 (26)
T 1gff_3 10 GKSKGARLWYVG 21 (26)
T ss_pred CCCCceEEEEec
Confidence 346799999853
No 4
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=15.22 E-value=38 Score=22.49 Aligned_cols=29 Identities=31% Similarity=0.796 Sum_probs=24.9
Q ss_pred CccchHHHHHHHHHHhhhhCCCCceEEEEcCceEEEEcC
Q 043520 92 GAETCQNCVSVATSDTAQLCPFGKENTIGYEECLLRYSN 130 (159)
Q Consensus 92 s~~~C~~Cl~~a~~~~~~~C~~~~ga~i~~~~C~lRYs~ 130 (159)
.-.-|+.|+.--..+-.+.|| +|-.||..
T Consensus 42 ~FPvCrpCyEYErkeG~q~Cp----------qCktrYkr 70 (93)
T 1weo_A 42 GFPACRPCYEYERREGTQNCP----------QCKTRYKR 70 (93)
T ss_dssp CCCCCHHHHHHHHHTSCSSCT----------TTCCCCCC
T ss_pred CChhhHHHHHHHHhccCcccc----------ccCCcccc
Confidence 346799999999999999999 78889974
No 5
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=14.76 E-value=80 Score=19.80 Aligned_cols=12 Identities=25% Similarity=0.600 Sum_probs=9.6
Q ss_pred cCceEEEEcCcc
Q 043520 121 YEECLLRYSNIS 132 (159)
Q Consensus 121 ~~~C~lRYs~~~ 132 (159)
-.+|++||+|..
T Consensus 41 ~~~ClV~FeD~S 52 (69)
T 2xk0_A 41 SDQYLIRFDDQS 52 (69)
T ss_dssp SSCEEEEETTCC
T ss_pred CceEEEEecCCc
Confidence 458999999864
No 6
>2ljs_A Trypsin inhibitor 3; beta strand, helix, cyclic backbone, hydrolase inhibitor; HET: PCA; NMR {Momordica cochinchinensis}
Probab=11.02 E-value=64 Score=16.65 Aligned_cols=8 Identities=50% Similarity=0.654 Sum_probs=5.9
Q ss_pred eccccCCC
Q 043520 84 LFLCRGDF 91 (159)
Q Consensus 84 laqC~~Dl 91 (159)
|.+|++|.
T Consensus 8 lkkckrds 15 (30)
T 2ljs_A 8 LKKCRRDS 15 (30)
T ss_dssp CCBCSSGG
T ss_pred HHHhcccc
Confidence 56888883
No 7
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=9.21 E-value=97 Score=19.18 Aligned_cols=15 Identities=27% Similarity=0.538 Sum_probs=12.7
Q ss_pred cCceEEEEcCcccCC
Q 043520 121 YEECLLRYSNISFFS 135 (159)
Q Consensus 121 ~~~C~lRYs~~~F~~ 135 (159)
++.|+.||++..||.
T Consensus 10 Gd~vmArW~D~~yYp 24 (67)
T 3p8d_A 10 NEQVLACWSDCRFYP 24 (67)
T ss_dssp TCEEEEECTTSCEEE
T ss_pred CCEEEEEcCCCCEee
Confidence 568999999888885
No 8
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=9.13 E-value=1.3e+02 Score=17.30 Aligned_cols=20 Identities=30% Similarity=0.629 Sum_probs=14.3
Q ss_pred cchHHHHHHHHHHhhhhCCC
Q 043520 94 ETCQNCVSVATSDTAQLCPF 113 (159)
Q Consensus 94 ~~C~~Cl~~a~~~~~~~C~~ 113 (159)
.-|..|+......-...||-
T Consensus 29 ~fC~~Ci~~~~~~~~~~CP~ 48 (65)
T 1g25_A 29 TLCESCVDLLFVRGAGNCPE 48 (65)
T ss_dssp CEEHHHHHHHHHTTSSSCTT
T ss_pred HhHHHHHHHHHHcCCCcCCC
Confidence 35999999986654456773
No 9
>2lif_A Core protein P21; signal peptide, E1 envelope protein, transmemb membrane protein, viral protein; NMR {Hepatitis c virus jfh-1}
Probab=11.92 E-value=73 Score=16.30 Aligned_cols=10 Identities=40% Similarity=0.464 Sum_probs=3.9
Q ss_pred HHHHHHHHhh
Q 043520 7 FVTALSVQIS 16 (159)
Q Consensus 7 ~~~~~~~~~~ 16 (159)
|++.+++++.
T Consensus 9 FlLaLlscLt 18 (27)
T 2lif_A 9 FLLALLSCIT 18 (27)
Confidence 3333333333
No 10
>3arc_Z Photosystem II reaction center protein Z; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_Z* 3a0b_Z* 3a0h_Z* 2axt_Z* 3bz1_Z* 3bz2_Z* 3kzi_Z* 3prq_Z* 3prr_Z*
Probab=8.68 E-value=2.1e+02 Score=17.48 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=8.1
Q ss_pred CchHHHHHHHHHHHhh
Q 043520 1 MNVILVFVTALSVQIS 16 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (159)
|.+++.++++.|+.++
T Consensus 1 M~i~fQl~v~aLi~~S 16 (62)
T 3arc_Z 1 MTILFQLALAALVILS 16 (62)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CeeHHHHHHHHHHHHH
Confidence 5565555555444443
Done!