Query 043520
Match_columns 159
No_of_seqs 136 out of 1064
Neff 7.1
Searched_HMMs 13730
Date Mon Mar 25 09:44:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043520.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043520hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1g25a_ g.44.1.1 (A:) TFIIH Ma 12.5 38 0.0028 18.8 1.2 20 94-113 29-48 (65)
2 d1weoa_ g.44.1.1 (A:) Cellulos 11.9 26 0.0019 21.6 0.3 31 92-132 42-72 (93)
3 d1ha9a_ g.3.2.1 (A:) Trypsin i 10.6 31 0.0023 17.0 0.3 8 84-91 12-19 (34)
4 d1rmda2 g.44.1.1 (A:1-86) V(D) 9.9 59 0.0043 19.3 1.5 20 94-113 44-63 (86)
5 d2o35a1 a.293.1.1 (A:2-80) Hyp 6.4 1.1E+02 0.008 18.1 1.6 14 94-107 39-52 (79)
6 d1fbva4 g.44.1.1 (A:356-434) C 5.9 1E+02 0.0074 17.5 1.2 20 94-113 44-63 (79)
7 d1wiga2 g.39.1.3 (A:33-73) Act 5.5 66 0.0048 16.6 0.1 11 115-125 18-28 (41)
8 d2axtz1 f.17.5.1 (Z:1-62) Phot 5.4 1.8E+02 0.013 16.2 2.1 13 1-13 1-13 (62)
9 d2c2la2 g.44.1.2 (A:225-304) S 5.0 88 0.0064 17.6 0.5 20 94-113 28-47 (80)
10 d1ur6b_ g.44.1.1 (B:) Not-4 N- 4.9 74 0.0054 16.6 0.1 21 93-113 24-44 (52)
No 1
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.52 E-value=38 Score=18.77 Aligned_cols=20 Identities=30% Similarity=0.629 Sum_probs=16.1
Q ss_pred cchHHHHHHHHHHhhhhCCC
Q 043520 94 ETCQNCVSVATSDTAQLCPF 113 (159)
Q Consensus 94 ~~C~~Cl~~a~~~~~~~C~~ 113 (159)
.-|..||..........||.
T Consensus 29 ~fc~~Ci~~~~~~~~~~CP~ 48 (65)
T d1g25a_ 29 TLCESCVDLLFVRGAGNCPE 48 (65)
T ss_dssp CEEHHHHHHHHHTTSSSCTT
T ss_pred HhhHHHHHHHhCcCcCCCCC
Confidence 46999999998776667884
No 2
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=11.91 E-value=26 Score=21.60 Aligned_cols=31 Identities=29% Similarity=0.773 Sum_probs=25.8
Q ss_pred CccchHHHHHHHHHHhhhhCCCCceEEEEcCceEEEEcCcc
Q 043520 92 GAETCQNCVSVATSDTAQLCPFGKENTIGYEECLLRYSNIS 132 (159)
Q Consensus 92 s~~~C~~Cl~~a~~~~~~~C~~~~ga~i~~~~C~lRYs~~~ 132 (159)
.-.-|+.|..--..+-.+.|| .|-.||..+.
T Consensus 42 ~FPvCrpCyEYErkeG~q~Cp----------qCkt~Ykr~k 72 (93)
T d1weoa_ 42 GFPACRPCYEYERREGTQNCP----------QCKTRYKRLR 72 (93)
T ss_dssp CCCCCHHHHHHHHHTSCSSCT----------TTCCCCCCCT
T ss_pred CCccchHHHHHHHhccCccCc----------ccCChhhhhc
Confidence 345799999999999999999 7888887644
No 3
>d1ha9a_ g.3.2.1 (A:) Trypsin inhibitor {Spiny bitter cucumber (Momordica cochinchinensis), MCOTI-II [TaxId: 3674]}
Probab=10.62 E-value=31 Score=16.99 Aligned_cols=8 Identities=50% Similarity=0.654 Sum_probs=6.1
Q ss_pred eccccCCC
Q 043520 84 LFLCRGDF 91 (159)
Q Consensus 84 laqC~~Dl 91 (159)
|-||++|.
T Consensus 12 lkkcrrds 19 (34)
T d1ha9a_ 12 LKKCRRDS 19 (34)
T ss_dssp CCBCSSGG
T ss_pred HHHhcccc
Confidence 56899983
No 4
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.89 E-value=59 Score=19.30 Aligned_cols=20 Identities=20% Similarity=0.476 Sum_probs=15.6
Q ss_pred cchHHHHHHHHHHhhhhCCC
Q 043520 94 ETCQNCVSVATSDTAQLCPF 113 (159)
Q Consensus 94 ~~C~~Cl~~a~~~~~~~C~~ 113 (159)
.-|+.||......-...||-
T Consensus 44 ~FC~~Ci~~~~~~~~~~CP~ 63 (86)
T d1rmda2 44 LFCRICILRCLKVMGSYCPS 63 (86)
T ss_dssp EEEHHHHHHHHHHTCSBCTT
T ss_pred hhhHHHHHHHHhhCCCcCcc
Confidence 46999999998765567883
No 5
>d2o35a1 a.293.1.1 (A:2-80) Hypothetical protein SMc04008 {Rhizobium meliloti [TaxId: 382]}
Probab=6.39 E-value=1.1e+02 Score=18.07 Aligned_cols=14 Identities=29% Similarity=0.589 Sum_probs=10.8
Q ss_pred cchHHHHHHHHHHh
Q 043520 94 ETCQNCVSVATSDT 107 (159)
Q Consensus 94 ~~C~~Cl~~a~~~~ 107 (159)
+-|+.||+......
T Consensus 39 GFCRNCLskWy~~~ 52 (79)
T d2o35a1 39 GFCRNCLSNWYREA 52 (79)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 57999999876554
No 6
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.89 E-value=1e+02 Score=17.51 Aligned_cols=20 Identities=30% Similarity=0.745 Sum_probs=14.5
Q ss_pred cchHHHHHHHHHHhhhhCCC
Q 043520 94 ETCQNCVSVATSDTAQLCPF 113 (159)
Q Consensus 94 ~~C~~Cl~~a~~~~~~~C~~ 113 (159)
.-|..|+......-.+.||-
T Consensus 44 ~fC~~Ci~~wl~~~~~~CP~ 63 (79)
T d1fbva4 44 LMCTSCLTSWQESEGQGCPF 63 (79)
T ss_dssp EECHHHHHHHHHTTCCSCTT
T ss_pred eeeHHHHHHHHHHCcCcCCC
Confidence 45999999987644456874
No 7
>d1wiga2 g.39.1.3 (A:33-73) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.55 E-value=66 Score=16.64 Aligned_cols=11 Identities=18% Similarity=0.295 Sum_probs=7.1
Q ss_pred ceEEEEcCceE
Q 043520 115 KENTIGYEECL 125 (159)
Q Consensus 115 ~ga~i~~~~C~ 125 (159)
+|..||.+.|.
T Consensus 18 QGs~IWHP~C~ 28 (41)
T d1wiga2 18 QGSSIWHPACR 28 (41)
T ss_dssp ETTEEECTTHH
T ss_pred cCCceeCCccc
Confidence 45677777763
No 8
>d2axtz1 f.17.5.1 (Z:1-62) Photosystem II reaction center protein Z, PsbZ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.35 E-value=1.8e+02 Score=16.23 Aligned_cols=13 Identities=23% Similarity=0.373 Sum_probs=5.9
Q ss_pred CchHHHHHHHHHH
Q 043520 1 MNVILVFVTALSV 13 (159)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (159)
|-+++.++++.|+
T Consensus 1 Mti~fQl~v~ALi 13 (62)
T d2axtz1 1 MTILFQLALAALV 13 (62)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CeeHHHHHHHHHH
Confidence 4554444444333
No 9
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.02 E-value=88 Score=17.65 Aligned_cols=20 Identities=5% Similarity=0.047 Sum_probs=15.5
Q ss_pred cchHHHHHHHHHHhhhhCCC
Q 043520 94 ETCQNCVSVATSDTAQLCPF 113 (159)
Q Consensus 94 ~~C~~Cl~~a~~~~~~~C~~ 113 (159)
.-|+.||......-...||-
T Consensus 28 tfc~~ci~~~l~~~~~~cP~ 47 (80)
T d2c2la2 28 TYDRKDIEEHLQRVGHFNPV 47 (80)
T ss_dssp EEETTHHHHHHHHTCSSCTT
T ss_pred eecHHHHHHHHhcCCccCCC
Confidence 56999999988766566875
No 10
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.93 E-value=74 Score=16.60 Aligned_cols=21 Identities=29% Similarity=0.637 Sum_probs=14.9
Q ss_pred ccchHHHHHHHHHHhhhhCCC
Q 043520 93 AETCQNCVSVATSDTAQLCPF 113 (159)
Q Consensus 93 ~~~C~~Cl~~a~~~~~~~C~~ 113 (159)
-.-|..|+...+..-...||.
T Consensus 24 H~~c~~C~~~w~~~~~~~CP~ 44 (52)
T d1ur6b_ 24 YQICRFCWHRIRTDENGLCPA 44 (52)
T ss_dssp CCCCHHHHHHHTTTSCCBCTT
T ss_pred CccchHHHHHHHhhcCCCCCc
Confidence 346999999887655456774
Done!