BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043521
(71 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SUI|A Chain A, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|B Chain B, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|C Chain C, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|D Chain D, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUS|A Chain A, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|B Chain B, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|C Chain C, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|D Chain D, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
Length = 247
Score = 84.0 bits (206), Expect = 2e-17, Method: Composition-based stats.
Identities = 40/48 (83%), Positives = 43/48 (89%)
Query: 24 NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
N M ++ DE QFLSMLLKLINAKNTMEIGVYTGYSLL TALAIP+DGK
Sbjct: 59 NIMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGK 106
>pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And
Flavonoid O- Methyltransferase From M. Crystallinum
pdb|3C3Y|B Chain B, Crystal Structure Of Pfomt, Phenylpropanoid And
Flavonoid O- Methyltransferase From M. Crystallinum
Length = 237
Score = 66.6 bits (161), Expect = 3e-12, Method: Composition-based stats.
Identities = 29/48 (60%), Positives = 40/48 (83%)
Query: 24 NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
++M ++P Q +S +LKL+NAK T+E+GV+TGYSLL TAL+IPDDGK
Sbjct: 50 SYMSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGK 97
>pdb|3R3H|A Chain A, Crystal Structure Of O-Methyltransferase From Legionella
Pneumophila
pdb|3R3H|B Chain B, Crystal Structure Of O-Methyltransferase From Legionella
Pneumophila
Length = 242
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 36/51 (70%)
Query: 21 MRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
M +M P++AQF+ ML++L AK +E+G +TGYS L +LA+PDDG+
Sbjct: 37 MELANMQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQ 87
>pdb|2HNK|A Chain A, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|B Chain B, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|C Chain C, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
Length = 239
Score = 53.5 bits (127), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 11 FVYFSQHIDGMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG 70
F+ + + + +M +P+E QFL++L K+ AK +EIG +TGYS L A A+P+DG
Sbjct: 27 FLKLRKETGTLAQANMQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDG 86
Query: 71 K 71
K
Sbjct: 87 K 87
>pdb|3CBG|A Chain A, Functional And Structural Characterization Of A
Cationdependent O-Methyltransferase From The
Cyanobacterium Synechocystis Sp. Strain Pcc 6803
Length = 232
Score = 53.1 bits (126), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 9 FYFVYFSQHIDGMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPD 68
FY + + M +P++AQFL +L+ L AK +EIGV+ GYS L AL +P
Sbjct: 37 FYLAQLRRETAHLPGAPMQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPP 96
Query: 69 DGK 71
DG+
Sbjct: 97 DGQ 99
>pdb|3TR6|A Chain A, Structure Of A O-Methyltransferase From Coxiella
Burnetii
Length = 225
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 28 STPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG 70
+ P++AQ L++L+KL AK ++IG +TGYS + LA+P DG
Sbjct: 48 TAPEQAQLLALLVKLXQAKKVIDIGTFTGYSAIAXGLALPKDG 90
>pdb|3TFW|A Chain A, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
pdb|3TFW|B Chain B, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
Length = 248
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 21 MRRNHMLSTP------DEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
+ NH P ++ QFL++L++L AK +EIG GYS ++ A +P DG+
Sbjct: 34 LENNHRAGLPAHDVAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWXARELPADGQ 90
>pdb|2AVD|A Chain A, Crystal Structure Of Human Catechol-O-Methyltransferase
Domain Containing 1
pdb|2AVD|B Chain B, Crystal Structure Of Human Catechol-O-Methyltransferase
Domain Containing 1
Length = 229
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 27 LSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
+ T ++AQ L+ L +LI AK +++G +TGYS L ALA+P DG+
Sbjct: 52 MMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGR 96
>pdb|3DUL|A Chain A, Crystal Structure Analysis Of The O-Methyltransferase
From Bacillus Cereus
pdb|3DUL|B Chain B, Crystal Structure Analysis Of The O-Methyltransferase
From Bacillus Cereus
pdb|3DUW|A Chain A, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
pdb|3DUW|B Chain B, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
Length = 223
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 29 TPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
+P + +FL +L+++ A+N +EIG GYS ++ A + G+
Sbjct: 43 SPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGR 85
>pdb|1O54|A Chain A, Crystal Structure Of Sam-Dependent O-Methyltransferase
(Tm0748) From Thermotoga Maritima At 1.65 A Resolution
Length = 277
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 18 IDGMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71
I M+R + P ++ F++M+L + ++ GV +G A A+ GK
Sbjct: 86 IMNMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGK 139
>pdb|2ZNL|A Chain A, Crystal Structure Of Pa-Pb1 Complex Form Influenza Virus
Rna Polymerase
Length = 478
Score = 25.8 bits (55), Expect = 6.7, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 10/54 (18%)
Query: 16 QHIDGMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDD 69
+HI MRRN+ S + ++K GVY +LL + A DD
Sbjct: 198 EHIASMRRNYFTSEVSHCRATEYIMK----------GVYINTALLNASCAAMDD 241
>pdb|3NTV|A Chain A, Crystal Structure Of A Putative Caffeoyl-Coa
O-Methyltransferase From Staphylococcus Aureus
pdb|3NTV|B Chain B, Crystal Structure Of A Putative Caffeoyl-Coa
O-Methyltransferase From Staphylococcus Aureus
Length = 232
Score = 25.8 bits (55), Expect = 7.2, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 35 FLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDD 69
+ L++ N KN +EIG GYS A +I DD
Sbjct: 62 LIKQLIRXNNVKNILEIGTAIGYSSXQFA-SISDD 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.142 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,005,538
Number of Sequences: 62578
Number of extensions: 54821
Number of successful extensions: 161
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 151
Number of HSP's gapped (non-prelim): 12
length of query: 71
length of database: 14,973,337
effective HSP length: 41
effective length of query: 30
effective length of database: 12,407,639
effective search space: 372229170
effective search space used: 372229170
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)