Query 043521
Match_columns 71
No_of_seqs 104 out of 1044
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 05:53:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043521.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043521hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01596 Methyltransf_3: O-met 99.6 1.5E-16 3.2E-21 109.7 4.4 49 23-71 24-72 (205)
2 PLN02589 caffeoyl-CoA O-methyl 99.6 2.5E-15 5.4E-20 106.3 7.3 56 16-71 51-106 (247)
3 COG4122 Predicted O-methyltran 99.6 2.2E-15 4.9E-20 105.4 6.3 52 20-71 35-86 (219)
4 PLN02476 O-methyltransferase 99.5 3.5E-14 7.6E-19 102.2 6.7 56 16-71 90-145 (278)
5 KOG1663 O-methyltransferase [S 99.5 1.1E-13 2.3E-18 98.2 5.6 50 22-71 51-100 (237)
6 PLN02781 Probable caffeoyl-CoA 99.4 5.1E-13 1.1E-17 92.8 7.0 48 24-71 48-95 (234)
7 PRK00121 trmB tRNA (guanine-N( 97.8 6.9E-06 1.5E-10 55.6 1.0 47 20-68 18-64 (202)
8 PRK13942 protein-L-isoaspartat 97.8 4.3E-05 9.4E-10 52.1 4.5 45 26-70 58-102 (212)
9 PLN03075 nicotianamine synthas 97.8 3.1E-05 6.8E-10 56.5 3.9 43 27-70 107-150 (296)
10 TIGR00080 pimt protein-L-isoas 97.6 0.00011 2.3E-09 49.9 4.0 43 28-70 61-103 (215)
11 PRK00312 pcm protein-L-isoaspa 97.6 0.0001 2.2E-09 49.6 3.8 41 25-65 59-99 (212)
12 PRK13944 protein-L-isoaspartat 97.5 0.00017 3.6E-09 48.9 4.2 28 43-70 71-98 (205)
13 PRK07402 precorrin-6B methylas 97.4 0.00032 6.8E-09 46.8 4.7 46 22-67 18-63 (196)
14 COG2518 Pcm Protein-L-isoaspar 97.4 0.00029 6.3E-09 49.4 4.1 42 26-67 54-95 (209)
15 TIGR00138 gidB 16S rRNA methyl 97.3 0.00084 1.8E-08 45.1 5.6 58 10-67 4-65 (181)
16 PRK08287 cobalt-precorrin-6Y C 97.3 0.00056 1.2E-08 45.2 4.6 44 24-67 11-54 (187)
17 COG4123 Predicted O-methyltran 97.2 0.00035 7.5E-09 50.1 3.1 55 13-68 14-68 (248)
18 TIGR00537 hemK_rel_arch HemK-r 97.2 0.00072 1.6E-08 44.4 4.2 37 30-66 5-41 (179)
19 PF05175 MTS: Methyltransferas 97.1 0.0011 2.4E-08 43.6 5.0 36 33-68 20-55 (170)
20 PF04989 CmcI: Cephalosporin h 97.1 0.00069 1.5E-08 47.4 4.1 39 27-65 15-53 (206)
21 PF08704 GCD14: tRNA methyltra 97.1 0.00084 1.8E-08 47.8 4.1 54 18-71 14-67 (247)
22 PF01135 PCMT: Protein-L-isoas 97.0 0.0005 1.1E-08 47.6 2.7 43 28-70 56-98 (209)
23 COG2519 GCD14 tRNA(1-methylade 97.0 0.00086 1.9E-08 48.4 3.7 51 21-71 71-121 (256)
24 TIGR02469 CbiT precorrin-6Y C5 97.0 0.0017 3.6E-08 39.0 4.2 28 41-68 16-43 (124)
25 PF12847 Methyltransf_18: Meth 96.8 0.001 2.2E-08 39.7 2.5 22 44-65 1-22 (112)
26 TIGR02752 MenG_heptapren 2-hep 96.8 0.0029 6.3E-08 42.6 4.9 32 39-70 40-71 (231)
27 TIGR03587 Pse_Me-ase pseudamin 96.8 0.0017 3.7E-08 44.3 3.7 29 39-67 38-66 (204)
28 PRK13943 protein-L-isoaspartat 96.8 0.0026 5.7E-08 46.7 4.7 28 42-69 78-105 (322)
29 TIGR00477 tehB tellurite resis 96.7 0.0017 3.6E-08 43.7 3.2 30 36-65 22-51 (195)
30 PRK04457 spermidine synthase; 96.6 0.0056 1.2E-07 43.3 5.4 38 31-68 53-90 (262)
31 PRK06202 hypothetical protein; 96.5 0.0019 4.1E-08 44.0 2.4 33 34-66 50-82 (232)
32 PRK00377 cbiT cobalt-precorrin 96.5 0.0049 1.1E-07 41.3 4.4 43 28-70 23-66 (198)
33 PRK08317 hypothetical protein; 96.5 0.0042 9.2E-08 40.9 4.1 36 33-68 8-43 (241)
34 PRK00107 gidB 16S rRNA methylt 96.5 0.0037 8E-08 42.4 3.8 23 45-67 46-68 (187)
35 PF13847 Methyltransf_31: Meth 96.5 0.0027 5.9E-08 40.4 2.7 27 43-69 2-28 (152)
36 TIGR02072 BioC biotin biosynth 96.4 0.0092 2E-07 39.5 5.1 26 43-68 33-58 (240)
37 PRK11207 tellurite resistance 96.4 0.0048 1E-07 41.5 3.7 37 25-65 15-51 (197)
38 PLN02233 ubiquinone biosynthes 96.3 0.01 2.2E-07 41.7 5.3 31 39-69 68-98 (261)
39 COG2890 HemK Methylase of poly 96.3 0.0067 1.4E-07 43.5 4.4 41 28-68 92-134 (280)
40 PF10294 Methyltransf_16: Puta 96.3 0.0031 6.7E-08 41.9 2.4 41 25-65 20-66 (173)
41 TIGR03533 L3_gln_methyl protei 96.3 0.005 1.1E-07 43.9 3.6 40 28-67 101-144 (284)
42 PRK14968 putative methyltransf 96.3 0.0074 1.6E-07 38.9 3.9 33 33-65 12-44 (188)
43 PRK00274 ksgA 16S ribosomal RN 96.3 0.0088 1.9E-07 42.2 4.6 41 26-66 24-64 (272)
44 PRK07580 Mg-protoporphyrin IX 96.3 0.0086 1.9E-07 40.0 4.3 31 35-65 52-84 (230)
45 PRK14896 ksgA 16S ribosomal RN 96.2 0.0075 1.6E-07 42.2 4.1 40 26-65 11-50 (258)
46 PRK00216 ubiE ubiquinone/menaq 96.2 0.016 3.4E-07 38.5 5.3 25 43-67 50-74 (239)
47 PRK01683 trans-aconitate 2-met 96.2 0.0062 1.4E-07 41.8 3.4 27 41-67 28-54 (258)
48 TIGR00091 tRNA (guanine-N(7)-) 96.2 0.0054 1.2E-07 41.1 3.0 26 43-68 15-40 (194)
49 TIGR00755 ksgA dimethyladenosi 96.1 0.011 2.3E-07 41.2 4.4 42 26-67 11-52 (253)
50 TIGR03534 RF_mod_PrmC protein- 96.1 0.014 3E-07 39.5 4.8 39 30-68 71-111 (251)
51 TIGR01934 MenG_MenH_UbiE ubiqu 96.1 0.013 2.8E-07 38.5 4.6 30 39-68 34-63 (223)
52 PRK11188 rrmJ 23S rRNA methylt 96.1 0.0077 1.7E-07 41.2 3.5 28 43-70 50-77 (209)
53 PF13489 Methyltransf_23: Meth 96.1 0.0095 2.1E-07 37.1 3.7 33 33-65 10-43 (161)
54 PRK14902 16S rRNA methyltransf 96.0 0.0058 1.2E-07 45.8 2.7 47 24-70 230-276 (444)
55 PRK11036 putative S-adenosyl-L 95.9 0.011 2.4E-07 40.9 3.6 23 43-65 43-65 (255)
56 PRK10258 biotin biosynthesis p 95.8 0.012 2.6E-07 40.4 3.5 32 33-64 31-62 (251)
57 PRK11088 rrmA 23S rRNA methylt 95.8 0.015 3.2E-07 40.8 4.0 25 44-68 85-109 (272)
58 PF13679 Methyltransf_32: Meth 95.8 0.015 3.3E-07 37.2 3.8 34 33-66 10-47 (141)
59 PRK12335 tellurite resistance 95.8 0.0096 2.1E-07 42.2 3.0 24 41-64 117-140 (287)
60 PF01209 Ubie_methyltran: ubiE 95.8 0.0097 2.1E-07 41.6 2.9 35 36-70 39-73 (233)
61 PRK00517 prmA ribosomal protei 95.7 0.025 5.5E-07 39.2 4.9 34 32-65 106-140 (250)
62 PRK04266 fibrillarin; Provisio 95.7 0.012 2.6E-07 41.0 3.2 35 33-67 59-95 (226)
63 PRK14103 trans-aconitate 2-met 95.7 0.011 2.4E-07 40.8 2.9 27 41-67 26-52 (255)
64 PRK14903 16S rRNA methyltransf 95.7 0.011 2.4E-07 44.6 3.1 47 24-70 217-263 (431)
65 TIGR00438 rrmJ cell division p 95.6 0.015 3.2E-07 38.5 3.3 35 35-69 23-57 (188)
66 PRK09328 N5-glutamine S-adenos 95.6 0.02 4.4E-07 39.4 4.1 26 42-67 106-131 (275)
67 PRK01544 bifunctional N5-gluta 95.6 0.024 5.2E-07 43.7 4.8 24 45-68 139-162 (506)
68 COG2264 PrmA Ribosomal protein 95.6 0.016 3.5E-07 42.6 3.7 30 33-64 153-182 (300)
69 PRK15068 tRNA mo(5)U34 methylt 95.6 0.017 3.6E-07 42.1 3.7 25 41-65 119-143 (322)
70 PRK15451 tRNA cmo(5)U34 methyl 95.5 0.015 3.3E-07 40.2 3.1 24 43-66 55-78 (247)
71 smart00828 PKS_MT Methyltransf 95.5 0.012 2.7E-07 39.4 2.6 22 46-67 1-22 (224)
72 PRK14904 16S rRNA methyltransf 95.5 0.013 2.7E-07 44.2 2.7 48 23-70 229-276 (445)
73 PRK05134 bifunctional 3-demeth 95.5 0.02 4.4E-07 38.6 3.5 37 29-65 33-69 (233)
74 TIGR00536 hemK_fam HemK family 95.4 0.038 8.2E-07 39.1 5.0 39 29-67 95-137 (284)
75 PRK10909 rsmD 16S rRNA m(2)G96 95.4 0.033 7.2E-07 38.2 4.4 38 26-63 35-72 (199)
76 PRK11805 N5-glutamine S-adenos 95.4 0.036 7.9E-07 40.1 4.8 40 28-67 113-156 (307)
77 TIGR02021 BchM-ChlM magnesium 95.3 0.022 4.7E-07 38.4 3.4 24 42-65 53-76 (219)
78 PRK11705 cyclopropane fatty ac 95.3 0.042 9E-07 41.0 5.0 39 28-66 148-189 (383)
79 PRK15001 SAM-dependent 23S rib 95.2 0.02 4.4E-07 42.9 3.3 35 34-68 218-252 (378)
80 TIGR02716 C20_methyl_CrtF C-20 95.2 0.031 6.6E-07 39.7 4.0 29 40-68 145-173 (306)
81 TIGR00740 methyltransferase, p 95.2 0.05 1.1E-06 37.1 4.9 24 44-67 53-76 (239)
82 PLN02244 tocopherol O-methyltr 95.1 0.04 8.8E-07 40.1 4.4 35 32-66 98-140 (340)
83 PRK05785 hypothetical protein; 95.1 0.035 7.6E-07 38.3 3.8 33 34-66 40-73 (226)
84 TIGR00563 rsmB ribosomal RNA s 95.1 0.023 5E-07 42.5 3.1 38 30-67 224-261 (426)
85 TIGR00446 nop2p NOL1/NOP2/sun 95.0 0.028 6E-07 39.6 3.3 38 33-70 60-97 (264)
86 PF06080 DUF938: Protein of un 95.0 0.035 7.7E-07 38.8 3.7 36 33-68 12-49 (204)
87 PRK14901 16S rRNA methyltransf 94.9 0.023 4.9E-07 42.7 2.7 41 30-70 238-278 (434)
88 COG2813 RsmC 16S RNA G1207 met 94.9 0.033 7E-07 41.1 3.3 39 28-67 143-181 (300)
89 KOG3191 Predicted N6-DNA-methy 94.8 0.031 6.8E-07 39.3 3.0 29 41-69 40-68 (209)
90 TIGR00406 prmA ribosomal prote 94.8 0.069 1.5E-06 38.0 4.8 33 32-64 146-179 (288)
91 COG2230 Cfa Cyclopropane fatty 94.8 0.081 1.7E-06 38.7 5.2 45 22-66 47-94 (283)
92 TIGR03840 TMPT_Se_Te thiopurin 94.7 0.053 1.2E-06 37.4 4.0 22 44-65 34-55 (213)
93 TIGR01983 UbiG ubiquinone bios 94.7 0.069 1.5E-06 35.6 4.4 37 29-65 26-66 (224)
94 TIGR03438 probable methyltrans 94.7 0.092 2E-06 37.6 5.2 39 29-67 43-86 (301)
95 PRK11873 arsM arsenite S-adeno 94.7 0.028 6.1E-07 39.0 2.5 30 41-70 74-103 (272)
96 PLN02490 MPBQ/MSBQ methyltrans 94.6 0.02 4.3E-07 42.5 1.8 24 44-67 113-136 (340)
97 PRK14121 tRNA (guanine-N(7)-)- 94.6 0.047 1E-06 41.4 3.8 26 43-68 121-146 (390)
98 smart00650 rADc Ribosomal RNA 94.6 0.041 8.9E-07 35.8 3.1 23 43-65 12-34 (169)
99 PTZ00338 dimethyladenosine tra 94.6 0.084 1.8E-06 38.2 4.9 40 26-65 18-57 (294)
100 PRK10901 16S rRNA methyltransf 94.5 0.033 7.2E-07 41.7 2.7 40 28-67 228-267 (427)
101 PTZ00098 phosphoethanolamine N 94.5 0.045 9.8E-07 38.5 3.2 25 41-65 49-73 (263)
102 COG2242 CobL Precorrin-6B meth 94.4 0.098 2.1E-06 36.3 4.7 47 24-71 14-60 (187)
103 PF06325 PrmA: Ribosomal prote 94.3 0.091 2E-06 38.3 4.6 35 30-64 146-181 (295)
104 PRK04148 hypothetical protein; 94.3 0.072 1.6E-06 35.0 3.7 33 32-64 4-37 (134)
105 TIGR02081 metW methionine bios 94.3 0.069 1.5E-06 35.4 3.7 23 44-66 13-35 (194)
106 PF03848 TehB: Tellurite resis 94.1 0.053 1.1E-06 37.4 2.9 32 33-65 20-51 (192)
107 PRK00811 spermidine synthase; 94.1 0.053 1.1E-06 38.7 2.9 23 43-65 75-97 (283)
108 PRK09489 rsmC 16S ribosomal RN 94.1 0.069 1.5E-06 39.3 3.6 39 28-67 181-219 (342)
109 COG2226 UbiE Methylase involve 93.9 0.091 2E-06 37.4 3.8 35 33-67 37-74 (238)
110 KOG2904 Predicted methyltransf 93.8 0.11 2.3E-06 38.8 4.2 42 27-68 125-172 (328)
111 TIGR03704 PrmC_rel_meth putati 93.8 0.11 2.3E-06 36.5 3.9 23 45-67 87-109 (251)
112 COG3510 CmcI Cephalosporin hyd 93.7 0.069 1.5E-06 38.1 2.9 40 29-68 54-93 (237)
113 COG4106 Tam Trans-aconitate me 93.7 0.051 1.1E-06 39.3 2.2 31 38-68 24-54 (257)
114 COG0220 Predicted S-adenosylme 93.7 0.084 1.8E-06 37.2 3.3 29 41-69 45-73 (227)
115 TIGR00452 methyltransferase, p 93.6 0.061 1.3E-06 39.4 2.6 23 43-65 120-142 (314)
116 TIGR01444 fkbM_fam methyltrans 93.6 0.059 1.3E-06 33.5 2.2 21 47-67 1-21 (143)
117 PLN02396 hexaprenyldihydroxybe 93.4 0.064 1.4E-06 39.3 2.4 21 44-64 131-151 (322)
118 PRK06922 hypothetical protein; 93.4 0.086 1.9E-06 42.6 3.2 33 35-67 409-441 (677)
119 PF13649 Methyltransf_25: Meth 93.3 0.059 1.3E-06 32.0 1.8 19 48-66 1-19 (101)
120 PRK14966 unknown domain/N5-glu 93.3 0.22 4.7E-06 38.3 5.2 39 29-67 235-274 (423)
121 PRK03522 rumB 23S rRNA methylu 93.3 0.12 2.6E-06 37.2 3.6 40 26-65 151-194 (315)
122 PLN02336 phosphoethanolamine N 93.2 0.12 2.6E-06 38.7 3.6 25 42-66 264-288 (475)
123 TIGR00417 speE spermidine synt 93.2 0.1 2.3E-06 36.7 3.1 24 43-66 71-94 (270)
124 PF02353 CMAS: Mycolic acid cy 93.1 0.073 1.6E-06 38.1 2.3 38 28-65 43-83 (273)
125 KOG1661 Protein-L-isoaspartate 93.1 0.19 4.1E-06 36.1 4.3 39 32-70 69-108 (237)
126 PRK13255 thiopurine S-methyltr 93.0 0.31 6.8E-06 33.6 5.2 21 44-64 37-57 (218)
127 PRK01581 speE spermidine synth 92.9 0.12 2.6E-06 39.1 3.3 26 40-65 146-171 (374)
128 PTZ00146 fibrillarin; Provisio 92.9 0.088 1.9E-06 38.6 2.5 27 44-70 132-158 (293)
129 KOG2915 tRNA(1-methyladenosine 92.8 0.13 2.9E-06 38.2 3.2 40 32-71 93-132 (314)
130 PF02390 Methyltransf_4: Putat 92.7 0.1 2.2E-06 35.5 2.5 22 47-68 20-41 (195)
131 PRK11727 23S rRNA mA1618 methy 92.7 0.25 5.3E-06 36.5 4.6 24 44-67 114-137 (321)
132 cd02440 AdoMet_MTases S-adenos 92.6 0.086 1.9E-06 29.1 1.7 18 47-64 1-18 (107)
133 PLN02672 methionine S-methyltr 92.6 0.27 5.8E-06 41.7 5.1 23 45-67 119-141 (1082)
134 PRK14967 putative methyltransf 92.5 0.32 6.9E-06 33.0 4.7 21 45-65 37-57 (223)
135 TIGR00478 tly hemolysin TlyA f 92.4 0.1 2.3E-06 36.6 2.3 22 44-65 75-96 (228)
136 PLN02336 phosphoethanolamine N 92.4 0.13 2.9E-06 38.4 2.9 24 42-65 35-58 (475)
137 COG3963 Phospholipid N-methylt 92.2 0.43 9.2E-06 33.4 5.0 56 11-66 13-70 (194)
138 PRK11783 rlmL 23S rRNA m(2)G24 92.1 0.24 5.2E-06 39.6 4.1 27 39-65 533-559 (702)
139 PLN02585 magnesium protoporphy 92.0 0.33 7.1E-06 35.5 4.5 22 44-65 144-165 (315)
140 PRK15128 23S rRNA m(5)C1962 me 91.8 0.11 2.4E-06 39.1 1.9 24 41-64 217-240 (396)
141 PLN02366 spermidine synthase 91.6 0.18 3.9E-06 36.8 2.8 37 29-65 71-112 (308)
142 COG2227 UbiG 2-polyprenyl-3-me 91.5 0.2 4.4E-06 36.0 2.9 33 33-65 45-80 (243)
143 TIGR00479 rumA 23S rRNA (uraci 91.2 0.26 5.6E-06 36.7 3.3 23 44-66 292-314 (431)
144 PF05401 NodS: Nodulation prot 91.2 0.63 1.4E-05 32.7 5.1 52 14-65 10-64 (201)
145 PF08003 Methyltransf_9: Prote 91.1 0.3 6.4E-06 36.4 3.5 31 36-66 107-137 (315)
146 KOG1541 Predicted protein carb 91.0 0.087 1.9E-06 38.3 0.6 19 44-62 50-68 (270)
147 PHA03412 putative methyltransf 90.9 0.35 7.6E-06 34.7 3.6 42 24-67 31-72 (241)
148 PRK13168 rumA 23S rRNA m(5)U19 90.8 0.29 6.3E-06 36.8 3.3 40 27-66 276-319 (443)
149 COG0030 KsgA Dimethyladenosine 90.8 0.47 1E-05 34.3 4.2 32 36-67 19-53 (259)
150 PF00398 RrnaAD: Ribosomal RNA 90.5 0.2 4.4E-06 35.1 2.1 41 26-66 12-52 (262)
151 PF13659 Methyltransf_26: Meth 90.5 0.24 5.1E-06 29.6 2.1 21 46-66 2-22 (117)
152 PHA01634 hypothetical protein 90.2 0.19 4.1E-06 33.9 1.6 23 43-65 27-49 (156)
153 PF12242 Eno-Rase_NADH_b: NAD( 89.8 0.38 8.3E-06 29.3 2.6 16 42-57 36-51 (78)
154 PF09243 Rsm22: Mitochondrial 89.6 0.84 1.8E-05 32.5 4.7 34 34-67 20-56 (274)
155 PF00891 Methyltransf_2: O-met 89.5 0.23 5E-06 33.8 1.7 31 38-68 94-124 (241)
156 TIGR02085 meth_trns_rumB 23S r 89.2 1 2.2E-05 33.3 5.0 41 25-65 210-254 (374)
157 TIGR01177 conserved hypothetic 89.0 0.72 1.6E-05 33.3 4.1 37 28-64 166-202 (329)
158 PRK03612 spermidine synthase; 88.8 0.42 9E-06 37.0 2.8 23 43-65 296-318 (521)
159 PF07279 DUF1442: Protein of u 88.8 0.39 8.5E-06 34.1 2.5 41 28-68 25-67 (218)
160 KOG2793 Putative N2,N2-dimethy 88.7 0.38 8.3E-06 34.6 2.4 23 44-66 86-108 (248)
161 TIGR02143 trmA_only tRNA (urac 88.5 1.3 2.8E-05 32.7 5.1 42 25-66 175-219 (353)
162 KOG1499 Protein arginine N-met 88.0 0.44 9.6E-06 35.9 2.4 24 42-65 58-81 (346)
163 KOG1270 Methyltransferases [Co 87.8 0.25 5.4E-06 36.3 1.0 20 46-65 91-110 (282)
164 COG4976 Predicted methyltransf 87.8 0.46 9.9E-06 34.9 2.3 18 45-62 126-143 (287)
165 TIGR00095 RNA methyltransferas 87.3 1.5 3.2E-05 29.5 4.5 34 32-65 37-70 (189)
166 PRK05031 tRNA (uracil-5-)-meth 86.7 1.6 3.5E-05 32.2 4.7 43 25-67 184-229 (362)
167 PRK01544 bifunctional N5-gluta 86.6 0.76 1.6E-05 35.5 3.1 26 44-69 347-372 (506)
168 PLN02823 spermine synthase 86.4 1 2.2E-05 33.3 3.6 23 43-65 102-124 (336)
169 PF05206 TRM13: Methyltransfer 85.2 1.8 3.8E-05 31.1 4.2 37 32-68 3-42 (259)
170 KOG2899 Predicted methyltransf 84.7 0.78 1.7E-05 33.8 2.2 28 41-68 55-82 (288)
171 PHA03411 putative methyltransf 84.4 1.1 2.4E-05 32.8 2.9 25 42-66 62-86 (279)
172 PF05724 TPMT: Thiopurine S-me 83.6 2.1 4.6E-05 29.6 4.0 52 13-65 6-58 (218)
173 KOG0820 Ribosomal RNA adenine 83.6 1.6 3.4E-05 32.6 3.4 37 30-66 44-80 (315)
174 KOG2361 Predicted methyltransf 83.1 0.37 8E-06 35.1 0.0 26 43-68 70-95 (264)
175 PF02636 Methyltransf_28: Puta 81.6 2.2 4.7E-05 29.6 3.4 24 45-68 19-42 (252)
176 smart00138 MeTrc Methyltransfe 81.2 1.8 4E-05 30.5 3.0 24 44-67 99-126 (264)
177 PF02527 GidB: rRNA small subu 80.8 1.1 2.5E-05 30.4 1.7 63 5-68 3-72 (184)
178 KOG1271 Methyltransferases [Ge 79.5 2.4 5.2E-05 30.2 3.0 32 33-64 52-87 (227)
179 KOG3010 Methyltransferase [Gen 78.4 2.6 5.6E-05 30.8 3.0 33 33-65 21-54 (261)
180 PF01728 FtsJ: FtsJ-like methy 78.0 2.7 5.9E-05 27.3 2.8 23 44-66 23-45 (181)
181 COG0357 GidB Predicted S-adeno 77.5 1.5 3.3E-05 30.8 1.6 24 45-68 68-91 (215)
182 PF05728 UPF0227: Uncharacteri 77.5 11 0.00023 25.6 5.7 38 30-67 43-81 (187)
183 KOG1501 Arginine N-methyltrans 76.7 2 4.4E-05 34.2 2.2 22 47-68 69-90 (636)
184 PRK13256 thiopurine S-methyltr 75.4 8.7 0.00019 27.0 4.9 20 45-64 44-63 (226)
185 COG2263 Predicted RNA methylas 75.3 2.3 4.9E-05 29.9 1.9 37 28-64 26-65 (198)
186 KOG1298 Squalene monooxygenase 75.0 4.6 0.0001 31.7 3.7 60 5-71 10-69 (509)
187 PRK04338 N(2),N(2)-dimethylgua 73.9 8.6 0.00019 28.8 4.9 22 46-67 59-80 (382)
188 PF07021 MetW: Methionine bios 73.3 5.7 0.00012 27.7 3.5 20 46-65 15-34 (193)
189 KOG2651 rRNA adenine N-6-methy 70.6 7.5 0.00016 30.4 3.9 34 33-66 142-175 (476)
190 COG3897 Predicted methyltransf 70.2 3.3 7.1E-05 29.5 1.8 33 33-65 64-100 (218)
191 PRK11933 yebU rRNA (cytosine-C 70.1 5.9 0.00013 30.7 3.3 47 24-70 91-139 (470)
192 PF05185 PRMT5: PRMT5 arginine 66.6 5.2 0.00011 30.7 2.4 22 45-66 187-208 (448)
193 COG1565 Uncharacterized conser 66.3 7.7 0.00017 29.6 3.2 21 46-66 79-99 (370)
194 COG0293 FtsJ 23S rRNA methylas 63.7 7.1 0.00015 27.4 2.5 28 43-70 44-71 (205)
195 PRK00050 16S rRNA m(4)C1402 me 63.2 14 0.0003 27.1 3.9 28 44-71 19-46 (296)
196 PLN02668 indole-3-acetate carb 63.2 7.2 0.00016 29.7 2.6 20 45-64 64-83 (386)
197 PF03686 UPF0146: Uncharacteri 61.9 11 0.00023 24.8 2.9 23 34-56 3-25 (127)
198 KOG4300 Predicted methyltransf 60.8 13 0.00028 27.0 3.4 15 43-57 75-89 (252)
199 PF02384 N6_Mtase: N-6 DNA Met 60.3 25 0.00055 24.7 4.8 54 12-65 12-67 (311)
200 PF03492 Methyltransf_7: SAM d 59.4 13 0.00029 27.3 3.3 27 38-64 8-36 (334)
201 KOG3115 Methyltransferase-like 59.3 18 0.00039 26.2 3.9 57 13-69 21-85 (249)
202 PF05971 Methyltransf_10: Prot 59.3 11 0.00024 27.8 2.9 26 34-61 87-117 (299)
203 PF05219 DREV: DREV methyltran 57.8 13 0.00029 27.1 3.1 25 43-67 93-117 (265)
204 PF05711 TylF: Macrocin-O-meth 57.4 6.4 0.00014 28.2 1.4 41 26-66 52-96 (248)
205 COG0421 SpeE Spermidine syntha 57.1 14 0.00031 26.7 3.2 25 43-67 75-99 (282)
206 COG3007 Uncharacterized paraqu 57.1 5.7 0.00012 30.2 1.1 27 42-68 38-65 (398)
207 COG1255 Uncharacterized protei 56.2 12 0.00026 24.7 2.4 21 35-55 4-24 (129)
208 PF03291 Pox_MCEL: mRNA cappin 54.2 10 0.00023 27.9 2.1 25 33-57 47-75 (331)
209 KOG1631 Translocon-associated 52.9 12 0.00026 27.3 2.1 22 34-55 204-225 (261)
210 KOG2811 Uncharacterized conser 51.8 32 0.00069 26.8 4.4 36 33-68 167-206 (420)
211 PF03141 Methyltransf_29: Puta 51.5 13 0.00029 29.4 2.4 31 34-64 103-137 (506)
212 PF01564 Spermine_synth: Sperm 51.1 15 0.00033 25.7 2.4 24 43-66 75-98 (246)
213 TIGR02987 met_A_Alw26 type II 50.9 21 0.00044 27.4 3.3 40 28-67 8-54 (524)
214 PF07757 AdoMet_MTase: Predict 48.9 22 0.00047 23.0 2.7 30 33-62 43-76 (112)
215 TIGR03439 methyl_EasF probable 47.7 25 0.00054 25.9 3.2 40 29-68 56-100 (319)
216 PRK11760 putative 23S rRNA C24 47.1 17 0.00038 27.6 2.3 23 43-65 210-232 (357)
217 COG3150 Predicted esterase [Ge 47.0 69 0.0015 22.5 5.1 41 25-65 37-79 (191)
218 KOG1500 Protein arginine N-met 46.3 17 0.00037 28.4 2.2 36 29-65 163-198 (517)
219 PF04816 DUF633: Family of unk 46.1 18 0.00039 24.9 2.1 18 48-65 1-18 (205)
220 COG0500 SmtA SAM-dependent met 44.7 52 0.0011 17.8 5.0 20 40-59 43-63 (257)
221 COG1189 Predicted rRNA methyla 43.0 19 0.0004 26.2 1.8 32 34-65 69-100 (245)
222 KOG4589 Cell division protein 42.5 26 0.00057 25.1 2.5 26 45-70 70-95 (232)
223 COG2072 TrkA Predicted flavopr 41.4 16 0.00035 27.7 1.4 27 42-70 172-198 (443)
224 KOG2920 Predicted methyltransf 41.1 13 0.00027 27.5 0.8 31 32-62 98-134 (282)
225 PF08123 DOT1: Histone methyla 40.9 39 0.00084 23.3 3.1 24 41-64 39-62 (205)
226 KOG3201 Uncharacterized conser 40.5 3.8 8.1E-05 28.7 -1.9 28 42-69 27-55 (201)
227 PRK04940 hypothetical protein; 39.0 71 0.0015 21.9 4.2 39 28-66 37-81 (180)
228 PRK13512 coenzyme A disulfide 37.5 67 0.0014 23.9 4.1 36 33-70 136-171 (438)
229 PF13738 Pyr_redox_3: Pyridine 36.0 43 0.00092 21.4 2.6 27 42-70 164-190 (203)
230 PF01644 Chitin_synth_1: Chiti 34.9 43 0.00093 22.8 2.5 29 33-61 127-157 (163)
231 PF07780 Spb1_C: Spb1 C-termin 34.1 77 0.0017 22.5 3.8 37 12-48 77-113 (215)
232 PF07091 FmrO: Ribosomal RNA m 33.6 25 0.00055 25.5 1.3 18 44-61 105-122 (251)
233 PRK00536 speE spermidine synth 31.1 57 0.0012 23.4 2.8 24 42-65 70-93 (262)
234 smart00489 DEXDc3 DEAD-like he 30.9 89 0.0019 22.3 3.8 36 29-64 10-47 (289)
235 smart00488 DEXDc2 DEAD-like he 30.9 89 0.0019 22.3 3.8 36 29-64 10-47 (289)
236 COG5459 Predicted rRNA methyla 30.5 21 0.00045 28.0 0.5 26 43-68 112-137 (484)
237 PF01189 Nol1_Nop2_Fmu: NOL1/N 30.4 75 0.0016 22.7 3.3 50 21-70 62-111 (283)
238 TIGR03385 CoA_CoA_reduc CoA-di 30.4 1.1E+02 0.0024 22.4 4.3 35 33-69 125-159 (427)
239 PF01262 AlaDh_PNT_C: Alanine 29.6 80 0.0017 20.4 3.1 28 41-68 16-44 (168)
240 PF05958 tRNA_U5-meth_tr: tRNA 29.2 93 0.002 22.9 3.7 45 23-67 172-219 (352)
241 smart00827 PKS_AT Acyl transfe 29.1 1.3E+02 0.0027 20.7 4.2 32 36-68 254-285 (298)
242 KOG3420 Predicted RNA methylas 29.0 81 0.0018 21.9 3.1 37 25-61 26-65 (185)
243 KOG3987 Uncharacterized conser 28.3 27 0.00058 25.6 0.7 41 22-64 86-132 (288)
244 PF09445 Methyltransf_15: RNA 28.3 44 0.00095 22.5 1.7 21 46-66 1-21 (163)
245 TIGR00308 TRM1 tRNA(guanine-26 28.3 1.2E+02 0.0027 22.8 4.3 43 24-66 20-66 (374)
246 KOG2597 Predicted aminopeptida 27.3 58 0.0012 26.0 2.4 21 43-63 375-395 (513)
247 PRK06847 hypothetical protein; 27.0 48 0.001 23.4 1.8 18 44-61 3-20 (375)
248 PRK00913 multifunctional amino 26.7 70 0.0015 25.1 2.8 23 41-63 351-373 (483)
249 COG2384 Predicted SAM-dependen 25.7 1.2E+02 0.0026 21.8 3.6 30 36-67 10-39 (226)
250 KOG3048 Molecular chaperone Pr 25.1 37 0.0008 23.0 0.9 11 44-54 82-92 (153)
251 PRK13656 trans-2-enoyl-CoA red 24.4 71 0.0015 24.6 2.4 24 43-66 39-63 (398)
252 PF07942 N2227: N2227-like pro 23.4 32 0.00069 25.0 0.4 23 43-65 55-77 (270)
253 PRK11071 esterase YqiA; Provis 22.6 2.3E+02 0.0051 18.5 5.0 38 30-67 45-83 (190)
254 KOG4058 Uncharacterized conser 22.5 1.1E+02 0.0023 21.4 2.7 41 24-64 52-92 (199)
255 PRK06849 hypothetical protein; 21.7 74 0.0016 23.2 2.0 27 43-70 2-28 (389)
256 PRK07208 hypothetical protein; 21.6 63 0.0014 23.9 1.6 23 43-67 2-24 (479)
257 PF04672 Methyltransf_19: S-ad 21.5 82 0.0018 22.9 2.2 27 30-56 50-80 (267)
258 PF05891 Methyltransf_PK: AdoM 21.5 52 0.0011 23.4 1.1 30 33-62 39-73 (218)
259 PRK09564 coenzyme A disulfide 21.4 1.8E+02 0.0039 21.2 4.0 31 36-68 140-170 (444)
260 PRK07236 hypothetical protein; 21.3 77 0.0017 22.8 2.0 19 43-61 4-22 (386)
261 COG2521 Predicted archaeal met 20.9 67 0.0014 23.8 1.6 23 42-64 132-154 (287)
262 PLN02172 flavin-containing mon 20.6 71 0.0015 24.4 1.8 26 43-70 8-33 (461)
263 KOG2334 tRNA-dihydrouridine sy 20.6 19 0.00041 28.4 -1.3 42 28-69 65-106 (477)
264 KOG1540 Ubiquinone biosynthesi 20.5 2.3E+02 0.0049 21.2 4.3 35 34-68 87-124 (296)
No 1
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.64 E-value=1.5e-16 Score=109.66 Aligned_cols=49 Identities=45% Similarity=0.791 Sum_probs=45.8
Q ss_pred CcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCCC
Q 043521 23 RNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71 (71)
Q Consensus 23 ~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g~ 71 (71)
.+.|.+++++|+||.++++..+|++||||||++||||+|||+++|++|+
T Consensus 24 ~~~~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~ 72 (205)
T PF01596_consen 24 LPQMSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGK 72 (205)
T ss_dssp TGGGSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSE
T ss_pred CCCCccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccce
Confidence 6789999999999999999999999999999999999999999998874
No 2
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.60 E-value=2.5e-15 Score=106.27 Aligned_cols=56 Identities=68% Similarity=0.940 Sum_probs=50.0
Q ss_pred hhhhhhcCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCCC
Q 043521 16 QHIDGMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71 (71)
Q Consensus 16 ~~~~~~~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g~ 71 (71)
+.+..+..+.|.+++++|+||.++++..+|++||||||++||||+|||+++|++|+
T Consensus 51 ~~a~~~~~~~~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~ 106 (247)
T PLN02589 51 ELTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGK 106 (247)
T ss_pred HHHHhcCCCCCccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCE
Confidence 44445556788999999999999999999999999999999999999999998874
No 3
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.59 E-value=2.2e-15 Score=105.45 Aligned_cols=52 Identities=37% Similarity=0.653 Sum_probs=47.4
Q ss_pred hhcCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCCC
Q 043521 20 GMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71 (71)
Q Consensus 20 ~~~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g~ 71 (71)
+++.+.+++.+++|+||.+|++..+|++||||||++||||+|||.++|++|+
T Consensus 35 a~~~~~pi~~~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~ 86 (219)
T COG4122 35 ARENGVPIIDPETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGR 86 (219)
T ss_pred hHhcCCCCCChhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCe
Confidence 4556777777999999999999999999999999999999999999998774
No 4
>PLN02476 O-methyltransferase
Probab=99.51 E-value=3.5e-14 Score=102.15 Aligned_cols=56 Identities=43% Similarity=0.780 Sum_probs=49.6
Q ss_pred hhhhhhcCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCCC
Q 043521 16 QHIDGMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71 (71)
Q Consensus 16 ~~~~~~~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g~ 71 (71)
+.+..++.+.|.+++++|++|.++++..+|++||||||++||||+|||++++++|+
T Consensus 90 e~a~~~~~~~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~ 145 (278)
T PLN02476 90 EETSKMRGSQMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGC 145 (278)
T ss_pred HHHHhccCCccccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCE
Confidence 34444455789999999999999999999999999999999999999999998774
No 5
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.46 E-value=1.1e-13 Score=98.15 Aligned_cols=50 Identities=56% Similarity=0.974 Sum_probs=48.0
Q ss_pred cCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCCC
Q 043521 22 RRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71 (71)
Q Consensus 22 ~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g~ 71 (71)
....|.++|++|+|+.++++..+|+++||||++||||++.+|.++|++|+
T Consensus 51 ~~~~m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGr 100 (237)
T KOG1663|consen 51 PGSEMLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGR 100 (237)
T ss_pred cccceecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCce
Confidence 56789999999999999999999999999999999999999999999985
No 6
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.42 E-value=5.1e-13 Score=92.85 Aligned_cols=48 Identities=65% Similarity=0.998 Sum_probs=45.1
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCCC
Q 043521 24 NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71 (71)
Q Consensus 24 ~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g~ 71 (71)
+.|.+++++|+||.++++..+|++||||||++|||++|||++++++|+
T Consensus 48 ~~~~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~ 95 (234)
T PLN02781 48 SEMEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGR 95 (234)
T ss_pred cccccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCE
Confidence 568999999999999999999999999999999999999999987764
No 7
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=97.81 E-value=6.9e-06 Score=55.62 Aligned_cols=47 Identities=23% Similarity=0.250 Sum_probs=41.0
Q ss_pred hhcCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521 20 GMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPD 68 (71)
Q Consensus 20 ~~~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~ 68 (71)
+...+.+.+++.++.+...+.. +..+|||||||+|..+..+++..|.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~--~~~~VLDiGcGtG~~~~~la~~~p~ 64 (202)
T PRK00121 18 AIEELWPRLSPAPLDWAELFGN--DAPIHLEIGFGKGEFLVEMAKANPD 64 (202)
T ss_pred hhcccchhhcCCCCCHHHHcCC--CCCeEEEEccCCCHHHHHHHHHCCC
Confidence 3456788999999999999998 7789999999999999999987653
No 8
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.77 E-value=4.3e-05 Score=52.14 Aligned_cols=45 Identities=24% Similarity=0.349 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521 26 MLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG 70 (71)
Q Consensus 26 ~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g 70 (71)
..+.|.....+...+...+..+|||||||+||.+..+++.+++++
T Consensus 58 ~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~ 102 (212)
T PRK13942 58 TISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSG 102 (212)
T ss_pred EeCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCC
Confidence 345666666666666777888999999999999999998876554
No 9
>PLN03075 nicotianamine synthase; Provisional
Probab=97.77 E-value=3.1e-05 Score=56.52 Aligned_cols=43 Identities=12% Similarity=-0.093 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeccc-hHHHHHHHHhhCCCCC
Q 043521 27 LSTPDEAQFLSMLLKLINAKNTMEIGVY-TGYSLLYTALAIPDDG 70 (71)
Q Consensus 27 ~i~~~~g~~L~~l~~~~~~k~iLEIGT~-~GySal~lA~al~~~g 70 (71)
..++.++++|..+... +|++|+||||| .|+|+++++....+++
T Consensus 107 ~L~~lE~~~L~~~~~~-~p~~VldIGcGpgpltaiilaa~~~p~~ 150 (296)
T PLN03075 107 KLSKLEFDLLSQHVNG-VPTKVAFVGSGPLPLTSIVLAKHHLPTT 150 (296)
T ss_pred HHHHHHHHHHHHhhcC-CCCEEEEECCCCcHHHHHHHHHhcCCCC
Confidence 4677889999988887 99999999999 7899999998776665
No 10
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=97.57 E-value=0.00011 Score=49.91 Aligned_cols=43 Identities=30% Similarity=0.453 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521 28 STPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG 70 (71)
Q Consensus 28 i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g 70 (71)
..|..-+.+..++...+..+|||||||+|+.+..+++..+++|
T Consensus 61 ~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g 103 (215)
T TIGR00080 61 SAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDG 103 (215)
T ss_pred chHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCC
Confidence 3444445555556667778999999999999999999876544
No 11
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.56 E-value=0.0001 Score=49.61 Aligned_cols=41 Identities=27% Similarity=0.347 Sum_probs=33.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521 25 HMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 25 ~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a 65 (71)
.....+.....+..+++..+..+|||||||+|+++..+++.
T Consensus 59 ~~~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~ 99 (212)
T PRK00312 59 QTISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHL 99 (212)
T ss_pred CeeCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHH
Confidence 34567777777777777778899999999999999988875
No 12
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.50 E-value=0.00017 Score=48.87 Aligned_cols=28 Identities=29% Similarity=0.379 Sum_probs=23.6
Q ss_pred cCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521 43 INAKNTMEIGVYTGYSLLYTALAIPDDG 70 (71)
Q Consensus 43 ~~~k~iLEIGT~~GySal~lA~al~~~g 70 (71)
.+..+|||||||+||.+..+++.++++|
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g 98 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRG 98 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCC
Confidence 4446999999999999999999887554
No 13
>PRK07402 precorrin-6B methylase; Provisional
Probab=97.41 E-value=0.00032 Score=46.80 Aligned_cols=46 Identities=22% Similarity=0.159 Sum_probs=37.1
Q ss_pred cCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521 22 RRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIP 67 (71)
Q Consensus 22 ~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~ 67 (71)
..+.+...++..+++...+...+..+|||+|||+|+.++++++..+
T Consensus 18 ~~~~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~ 63 (196)
T PRK07402 18 LPGIPLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCP 63 (196)
T ss_pred CCCCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC
Confidence 3467777888887777777766778999999999999999987544
No 14
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.00029 Score=49.44 Aligned_cols=42 Identities=26% Similarity=0.348 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521 26 MLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIP 67 (71)
Q Consensus 26 ~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~ 67 (71)
-++.|..-..+..++...+..+|||||||+||.|--||+-..
T Consensus 54 tis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~ 95 (209)
T COG2518 54 TISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG 95 (209)
T ss_pred eecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC
Confidence 345554555566666777888999999999999999997543
No 15
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.28 E-value=0.00084 Score=45.06 Aligned_cols=58 Identities=19% Similarity=0.363 Sum_probs=35.2
Q ss_pred HHHHhhhhhhhhcCcCCCCCHHH--HHHHHH--HHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521 10 YFVYFSQHIDGMRRNHMLSTPDE--AQFLSM--LLKLINAKNTMEIGVYTGYSLLYTALAIP 67 (71)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~i~~~~--g~~L~~--l~~~~~~k~iLEIGT~~GySal~lA~al~ 67 (71)
|.++.++.......-.+..+++. ..+... ++...+.++|||||||+|+.++.+|..-+
T Consensus 4 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~i~~~~~~~~~~vLDiGcGtG~~s~~la~~~~ 65 (181)
T TIGR00138 4 YLELLQKWNKRFNLTSLKTPEEIWERHILDSLKLLEYLDGKKVIDIGSGAGFPGIPLAIARP 65 (181)
T ss_pred HHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCccHHHHHHHCC
Confidence 44555555444444333332222 223222 34556789999999999999999986543
No 16
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.27 E-value=0.00056 Score=45.20 Aligned_cols=44 Identities=23% Similarity=0.296 Sum_probs=32.4
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521 24 NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIP 67 (71)
Q Consensus 24 ~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~ 67 (71)
..+.+.++...++-..+...+..+|||||||+|+.++.+++..+
T Consensus 11 ~~~~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~ 54 (187)
T PRK08287 11 KVPMTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFP 54 (187)
T ss_pred CCCCchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCC
Confidence 34444455455555555666888999999999999999998764
No 17
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.18 E-value=0.00035 Score=50.07 Aligned_cols=55 Identities=18% Similarity=0.117 Sum_probs=47.4
Q ss_pred HhhhhhhhhcCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521 13 YFSQHIDGMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPD 68 (71)
Q Consensus 13 ~~~~~~~~~~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~ 68 (71)
.++++...+..+.+..+-+ +-+|..+++....++|||||||.|.-++.+|+..++
T Consensus 14 ~~~~~~I~q~~~~~~~~~D-aiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~ 68 (248)
T COG4123 14 TFKQFFIIQDRCGFRYGTD-AILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEK 68 (248)
T ss_pred cccceEEEeCCCccccccH-HHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCC
Confidence 3466666777788888886 999999999999999999999999999999987553
No 18
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.15 E-value=0.00072 Score=44.39 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhC
Q 043521 30 PDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAI 66 (71)
Q Consensus 30 ~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al 66 (71)
.+.+.+|...+...++++|||+|||+|+.++.+++.-
T Consensus 5 ~~d~~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~ 41 (179)
T TIGR00537 5 AEDSLLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG 41 (179)
T ss_pred CccHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC
Confidence 3445777777788888999999999999999998753
No 19
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.14 E-value=0.0011 Score=43.56 Aligned_cols=36 Identities=22% Similarity=0.202 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521 33 AQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPD 68 (71)
Q Consensus 33 g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~ 68 (71)
.++|...+...+.++|||+|||+|.-++.+++..|+
T Consensus 20 t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~ 55 (170)
T PF05175_consen 20 TRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPD 55 (170)
T ss_dssp HHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTC
T ss_pred HHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCC
Confidence 356666666669999999999999999999987664
No 20
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.14 E-value=0.00069 Score=47.42 Aligned_cols=39 Identities=21% Similarity=0.282 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521 27 LSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 27 ~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a 65 (71)
.-.|..-..++.++...+|+.|+|+|++.|-|++|+|+-
T Consensus 15 ~q~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~m 53 (206)
T PF04989_consen 15 IQYPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASM 53 (206)
T ss_dssp SS-HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHH
Confidence 345667889999999999999999999999999999863
No 21
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.07 E-value=0.00084 Score=47.82 Aligned_cols=54 Identities=19% Similarity=0.247 Sum_probs=37.3
Q ss_pred hhhhcCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCCC
Q 043521 18 IDGMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71 (71)
Q Consensus 18 ~~~~~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g~ 71 (71)
+...+...-++=|....++-+.+...+-.+|||-|||+|..|.+||+++.++|+
T Consensus 14 ~~~l~rrtQIiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~ 67 (247)
T PF08704_consen 14 TLSLPRRTQIIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGH 67 (247)
T ss_dssp HHTS-SSS----HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSE
T ss_pred HHhccCCcceeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeE
Confidence 334455555677777888889999999999999999999999999999988874
No 22
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=97.04 E-value=0.0005 Score=47.58 Aligned_cols=43 Identities=26% Similarity=0.305 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521 28 STPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG 70 (71)
Q Consensus 28 i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g 70 (71)
..|..-..+-.++...+-.+|||||||+||.|-.+|....+.|
T Consensus 56 s~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g 98 (209)
T PF01135_consen 56 SAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVG 98 (209)
T ss_dssp --HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTE
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccc
Confidence 4454444444444466777999999999999999998776654
No 23
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.01 E-value=0.00086 Score=48.44 Aligned_cols=51 Identities=24% Similarity=0.388 Sum_probs=43.6
Q ss_pred hcCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCCC
Q 043521 21 MRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71 (71)
Q Consensus 21 ~~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g~ 71 (71)
.+++.-.+-|....++-+.+...+-.+|||.|||+|.-|.+||+++.+.|+
T Consensus 71 ~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~ 121 (256)
T COG2519 71 MKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGH 121 (256)
T ss_pred CcCCCceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCce
Confidence 455555666777888888999999999999999999999999999998774
No 24
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=96.97 E-value=0.0017 Score=39.05 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=23.2
Q ss_pred HhcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521 41 KLINAKNTMEIGVYTGYSLLYTALAIPD 68 (71)
Q Consensus 41 ~~~~~k~iLEIGT~~GySal~lA~al~~ 68 (71)
...+.++|||||||.|..+..+++..|+
T Consensus 16 ~~~~~~~vldlG~G~G~~~~~l~~~~~~ 43 (124)
T TIGR02469 16 RLRPGDVLWDIGAGSGSITIEAARLVPN 43 (124)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCC
Confidence 3344579999999999999999998764
No 25
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=96.84 E-value=0.001 Score=39.70 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=19.6
Q ss_pred CCCeEEEeccchHHHHHHHHhh
Q 043521 44 NAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 44 ~~k~iLEIGT~~GySal~lA~a 65 (71)
+.++|||||||+|..++++++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~ 22 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARL 22 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHH
T ss_pred CCCEEEEEcCcCCHHHHHHHhc
Confidence 3578999999999999999983
No 26
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=96.82 E-value=0.0029 Score=42.61 Aligned_cols=32 Identities=13% Similarity=0.126 Sum_probs=25.6
Q ss_pred HHHhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521 39 LLKLINAKNTMEIGVYTGYSLLYTALAIPDDG 70 (71)
Q Consensus 39 l~~~~~~k~iLEIGT~~GySal~lA~al~~~g 70 (71)
.+...+.++|||||||+|..+..+++..++++
T Consensus 40 ~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~ 71 (231)
T TIGR02752 40 RMNVQAGTSALDVCCGTADWSIALAEAVGPEG 71 (231)
T ss_pred hcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCC
Confidence 34445567999999999999999999876544
No 27
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=96.80 E-value=0.0017 Score=44.33 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=23.5
Q ss_pred HHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521 39 LLKLINAKNTMEIGVYTGYSLLYTALAIP 67 (71)
Q Consensus 39 l~~~~~~k~iLEIGT~~GySal~lA~al~ 67 (71)
+-+..++.+|||||||+|+.+..+++.++
T Consensus 38 l~~~~~~~~VLDiGCG~G~~~~~L~~~~~ 66 (204)
T TIGR03587 38 LNRLPKIASILELGANIGMNLAALKRLLP 66 (204)
T ss_pred HHhcCCCCcEEEEecCCCHHHHHHHHhCC
Confidence 33445667999999999999999988754
No 28
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.77 E-value=0.0026 Score=46.66 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=23.4
Q ss_pred hcCCCeEEEeccchHHHHHHHHhhCCCC
Q 043521 42 LINAKNTMEIGVYTGYSLLYTALAIPDD 69 (71)
Q Consensus 42 ~~~~k~iLEIGT~~GySal~lA~al~~~ 69 (71)
..+..+|||||||+|+.+..+++..++.
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~ 105 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEK 105 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCC
Confidence 4455799999999999999999877643
No 29
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=96.73 E-value=0.0017 Score=43.68 Aligned_cols=30 Identities=27% Similarity=0.426 Sum_probs=24.6
Q ss_pred HHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521 36 LSMLLKLINAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 36 L~~l~~~~~~k~iLEIGT~~GySal~lA~a 65 (71)
+...+...++.+|||||||+|..++++|+.
T Consensus 22 l~~~~~~~~~~~vLDiGcG~G~~a~~la~~ 51 (195)
T TIGR00477 22 VREAVKTVAPCKTLDLGCGQGRNSLYLSLA 51 (195)
T ss_pred HHHHhccCCCCcEEEeCCCCCHHHHHHHHC
Confidence 334556677899999999999999999973
No 30
>PRK04457 spermidine synthase; Provisional
Probab=96.64 E-value=0.0056 Score=43.28 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521 31 DEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPD 68 (71)
Q Consensus 31 ~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~ 68 (71)
....++..+....+|++|||||+|.|.++.++++..|.
T Consensus 53 y~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p~ 90 (262)
T PRK04457 53 YTRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLPD 90 (262)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCCC
Confidence 33444455555568899999999999999999988763
No 31
>PRK06202 hypothetical protein; Provisional
Probab=96.54 E-value=0.0019 Score=44.02 Aligned_cols=33 Identities=18% Similarity=0.068 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCCCeEEEeccchHHHHHHHHhhC
Q 043521 34 QFLSMLLKLINAKNTMEIGVYTGYSLLYTALAI 66 (71)
Q Consensus 34 ~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al 66 (71)
+.+..++...++.+|||||||+|..+..+++..
T Consensus 50 ~~~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~ 82 (232)
T PRK06202 50 RLLRPALSADRPLTLLDIGCGGGDLAIDLARWA 82 (232)
T ss_pred HHHHHhcCCCCCcEEEEeccCCCHHHHHHHHHH
Confidence 344444444677899999999999999988654
No 32
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=96.54 E-value=0.0049 Score=41.25 Aligned_cols=43 Identities=26% Similarity=0.354 Sum_probs=29.1
Q ss_pred CCHHHHHHHH-HHHHhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521 28 STPDEAQFLS-MLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG 70 (71)
Q Consensus 28 i~~~~g~~L~-~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g 70 (71)
+..++-+.+. ......+..+|||+|||+|+.++.+|+.+++.+
T Consensus 23 ~t~~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~ 66 (198)
T PRK00377 23 MTKEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETG 66 (198)
T ss_pred CCHHHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCC
Confidence 4444333333 233445567999999999999999998776543
No 33
>PRK08317 hypothetical protein; Provisional
Probab=96.54 E-value=0.0042 Score=40.93 Aligned_cols=36 Identities=14% Similarity=0.075 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521 33 AQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPD 68 (71)
Q Consensus 33 g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~ 68 (71)
.+.+...+...+..+|||||||+|..+..+++..++
T Consensus 8 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~ 43 (241)
T PRK08317 8 RARTFELLAVQPGDRVLDVGCGPGNDARELARRVGP 43 (241)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCC
Confidence 344445566677789999999999999999987743
No 34
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=96.54 E-value=0.0037 Score=42.45 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=20.7
Q ss_pred CCeEEEeccchHHHHHHHHhhCC
Q 043521 45 AKNTMEIGVYTGYSLLYTALAIP 67 (71)
Q Consensus 45 ~k~iLEIGT~~GySal~lA~al~ 67 (71)
+++|||||||+|+.++.+++..+
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~ 68 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARP 68 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCC
Confidence 68999999999999999998655
No 35
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=96.47 E-value=0.0027 Score=40.44 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=21.4
Q ss_pred cCCCeEEEeccchHHHHHHHHhhCCCC
Q 043521 43 INAKNTMEIGVYTGYSLLYTALAIPDD 69 (71)
Q Consensus 43 ~~~k~iLEIGT~~GySal~lA~al~~~ 69 (71)
.+..+|||+|||+|..+..+++.+.++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~ 28 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPG 28 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTT
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCC
Confidence 456899999999999999999655543
No 36
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=96.40 E-value=0.0092 Score=39.49 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=22.1
Q ss_pred cCCCeEEEeccchHHHHHHHHhhCCC
Q 043521 43 INAKNTMEIGVYTGYSLLYTALAIPD 68 (71)
Q Consensus 43 ~~~k~iLEIGT~~GySal~lA~al~~ 68 (71)
.++++|||||||+|..+..+++..+.
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~ 58 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQ 58 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCC
Confidence 45679999999999999999987653
No 37
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=96.40 E-value=0.0048 Score=41.51 Aligned_cols=37 Identities=19% Similarity=0.321 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521 25 HMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 25 ~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a 65 (71)
.....+..-+.+ ...++.+|||+|||+|..++++|+.
T Consensus 15 ~~~~~~~l~~~l----~~~~~~~vLDiGcG~G~~a~~La~~ 51 (197)
T PRK11207 15 LTRTHSEVLEAV----KVVKPGKTLDLGCGNGRNSLYLAAN 51 (197)
T ss_pred CCCChHHHHHhc----ccCCCCcEEEECCCCCHHHHHHHHC
Confidence 334445433333 3456789999999999999999974
No 38
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=96.34 E-value=0.01 Score=41.66 Aligned_cols=31 Identities=6% Similarity=0.019 Sum_probs=24.6
Q ss_pred HHHhcCCCeEEEeccchHHHHHHHHhhCCCC
Q 043521 39 LLKLINAKNTMEIGVYTGYSLLYTALAIPDD 69 (71)
Q Consensus 39 l~~~~~~k~iLEIGT~~GySal~lA~al~~~ 69 (71)
++...+..+|||||||+|..+..+++..+++
T Consensus 68 ~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~ 98 (261)
T PLN02233 68 WSGAKMGDRVLDLCCGSGDLAFLLSEKVGSD 98 (261)
T ss_pred HhCCCCCCEEEEECCcCCHHHHHHHHHhCCC
Confidence 3445567799999999999999999876543
No 39
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=96.34 E-value=0.0067 Score=43.50 Aligned_cols=41 Identities=24% Similarity=0.308 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHH--HhcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521 28 STPDEAQFLSMLL--KLINAKNTMEIGVYTGYSLLYTALAIPD 68 (71)
Q Consensus 28 i~~~~g~~L~~l~--~~~~~k~iLEIGT~~GySal~lA~al~~ 68 (71)
-.+++-.++.... ....+++|||||||+|.-|+.+|...|+
T Consensus 92 Pr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~ 134 (280)
T COG2890 92 PRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPD 134 (280)
T ss_pred cCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcC
Confidence 3445555665532 2222227999999999999999998874
No 40
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=96.32 E-value=0.0031 Score=41.92 Aligned_cols=41 Identities=22% Similarity=0.177 Sum_probs=27.7
Q ss_pred CCCCCHHHHHHHHHH------HHhcCCCeEEEeccchHHHHHHHHhh
Q 043521 25 HMLSTPDEAQFLSML------LKLINAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 25 ~~~i~~~~g~~L~~l------~~~~~~k~iLEIGT~~GySal~lA~a 65 (71)
.+..+..-+++|... -...+.++|||+|+|+|..++.+|..
T Consensus 20 vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~ 66 (173)
T PF10294_consen 20 VWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKL 66 (173)
T ss_dssp ---HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT
T ss_pred EechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhc
Confidence 343444445555553 34678899999999999999999986
No 41
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=96.32 E-value=0.005 Score=43.93 Aligned_cols=40 Identities=15% Similarity=0.152 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHh----cCCCeEEEeccchHHHHHHHHhhCC
Q 043521 28 STPDEAQFLSMLLKL----INAKNTMEIGVYTGYSLLYTALAIP 67 (71)
Q Consensus 28 i~~~~g~~L~~l~~~----~~~k~iLEIGT~~GySal~lA~al~ 67 (71)
..+++..++...+.. .++++|||+|||+|..++.+++..+
T Consensus 101 pr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~ 144 (284)
T TIGR03533 101 PRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFP 144 (284)
T ss_pred CCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCC
Confidence 445566666655442 3467999999999999999998765
No 42
>PRK14968 putative methyltransferase; Provisional
Probab=96.26 E-value=0.0074 Score=38.92 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521 33 AQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 33 g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a 65 (71)
..++...+...+.++|||+|||+|+.+..+++.
T Consensus 12 ~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~ 44 (188)
T PRK14968 12 SFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN 44 (188)
T ss_pred HHHHHHhhhccCCCEEEEEccccCHHHHHHHhh
Confidence 455555666678889999999999999999875
No 43
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=96.26 E-value=0.0088 Score=42.25 Aligned_cols=41 Identities=15% Similarity=-0.058 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhC
Q 043521 26 MLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAI 66 (71)
Q Consensus 26 ~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al 66 (71)
..+++...+.+...+...+..+|||||||+|..|..+++..
T Consensus 24 fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~ 64 (272)
T PRK00274 24 FLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA 64 (272)
T ss_pred cCCCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC
Confidence 45666655555445555677799999999999999999864
No 44
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=96.25 E-value=0.0086 Score=40.03 Aligned_cols=31 Identities=19% Similarity=0.107 Sum_probs=23.4
Q ss_pred HHHHHHH--hcCCCeEEEeccchHHHHHHHHhh
Q 043521 35 FLSMLLK--LINAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 35 ~L~~l~~--~~~~k~iLEIGT~~GySal~lA~a 65 (71)
++..+.. ..+..+|||||||+|..+..+++.
T Consensus 52 ~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~ 84 (230)
T PRK07580 52 VLSWLPADGDLTGLRILDAGCGVGSLSIPLARR 84 (230)
T ss_pred HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHc
Confidence 4444433 356779999999999999999864
No 45
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=96.24 E-value=0.0075 Score=42.22 Aligned_cols=40 Identities=15% Similarity=0.004 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521 26 MLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 26 ~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a 65 (71)
..+++...+.+...+...+.++|||||||+|..|..+++.
T Consensus 11 fl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~ 50 (258)
T PRK14896 11 FLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR 50 (258)
T ss_pred ccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh
Confidence 4567766666666666667789999999999999999975
No 46
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=96.19 E-value=0.016 Score=38.50 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=21.8
Q ss_pred cCCCeEEEeccchHHHHHHHHhhCC
Q 043521 43 INAKNTMEIGVYTGYSLLYTALAIP 67 (71)
Q Consensus 43 ~~~k~iLEIGT~~GySal~lA~al~ 67 (71)
.+..+|||||||+|..+..+++..+
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~ 74 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVG 74 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcC
Confidence 3457999999999999999998875
No 47
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=96.17 E-value=0.0062 Score=41.80 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=23.1
Q ss_pred HhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521 41 KLINAKNTMEIGVYTGYSLLYTALAIP 67 (71)
Q Consensus 41 ~~~~~k~iLEIGT~~GySal~lA~al~ 67 (71)
...+.++|||||||+|..+..+++..|
T Consensus 28 ~~~~~~~vLDiGcG~G~~~~~la~~~~ 54 (258)
T PRK01683 28 PLENPRYVVDLGCGPGNSTELLVERWP 54 (258)
T ss_pred CCcCCCEEEEEcccCCHHHHHHHHHCC
Confidence 345678999999999999999998765
No 48
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=96.16 E-value=0.0054 Score=41.08 Aligned_cols=26 Identities=35% Similarity=0.317 Sum_probs=22.7
Q ss_pred cCCCeEEEeccchHHHHHHHHhhCCC
Q 043521 43 INAKNTMEIGVYTGYSLLYTALAIPD 68 (71)
Q Consensus 43 ~~~k~iLEIGT~~GySal~lA~al~~ 68 (71)
.+..+|||||||+|..+..+|+..|+
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p~ 40 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNPD 40 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCCC
Confidence 46679999999999999999988764
No 49
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=96.14 E-value=0.011 Score=41.18 Aligned_cols=42 Identities=14% Similarity=0.014 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521 26 MLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIP 67 (71)
Q Consensus 26 ~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~ 67 (71)
..+++...+-+-..+...+.++|||||+|+|..+..+++..+
T Consensus 11 fl~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~ 52 (253)
T TIGR00755 11 FLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK 52 (253)
T ss_pred cCCCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC
Confidence 345555544444444556778999999999999999988653
No 50
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=96.12 E-value=0.014 Score=39.45 Aligned_cols=39 Identities=23% Similarity=0.388 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhc--CCCeEEEeccchHHHHHHHHhhCCC
Q 043521 30 PDEAQFLSMLLKLI--NAKNTMEIGVYTGYSLLYTALAIPD 68 (71)
Q Consensus 30 ~~~g~~L~~l~~~~--~~k~iLEIGT~~GySal~lA~al~~ 68 (71)
+++-.++..+.... ++.+|||+|||+|..++.+++..+.
T Consensus 71 ~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~ 111 (251)
T TIGR03534 71 PDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERPD 111 (251)
T ss_pred CChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCC
Confidence 34445555555443 4558999999999999999987653
No 51
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=96.11 E-value=0.013 Score=38.51 Aligned_cols=30 Identities=20% Similarity=0.356 Sum_probs=24.7
Q ss_pred HHHhcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521 39 LLKLINAKNTMEIGVYTGYSLLYTALAIPD 68 (71)
Q Consensus 39 l~~~~~~k~iLEIGT~~GySal~lA~al~~ 68 (71)
++...++.+|||+|||.|..+..+++..++
T Consensus 34 ~~~~~~~~~vldiG~G~G~~~~~~~~~~~~ 63 (223)
T TIGR01934 34 LIGVFKGQKVLDVACGTGDLAIELAKSAPD 63 (223)
T ss_pred HhccCCCCeEEEeCCCCChhHHHHHHhcCC
Confidence 333447789999999999999999988764
No 52
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=96.10 E-value=0.0077 Score=41.16 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=23.4
Q ss_pred cCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521 43 INAKNTMEIGVYTGYSLLYTALAIPDDG 70 (71)
Q Consensus 43 ~~~k~iLEIGT~~GySal~lA~al~~~g 70 (71)
.+..+|||||||+|..+..+++..++.+
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~ 77 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKG 77 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCc
Confidence 4566899999999999999998876543
No 53
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=96.09 E-value=0.0095 Score=37.12 Aligned_cols=33 Identities=36% Similarity=0.352 Sum_probs=25.4
Q ss_pred HHHHHHHHH-hcCCCeEEEeccchHHHHHHHHhh
Q 043521 33 AQFLSMLLK-LINAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 33 g~~L~~l~~-~~~~k~iLEIGT~~GySal~lA~a 65 (71)
.+++..+.. ..+.++|||||||.|..+..|++.
T Consensus 10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~ 43 (161)
T PF13489_consen 10 ADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR 43 (161)
T ss_dssp HHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT
T ss_pred HHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh
Confidence 345555554 677889999999999988888653
No 54
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=95.98 E-value=0.0058 Score=45.83 Aligned_cols=47 Identities=9% Similarity=0.080 Sum_probs=35.9
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521 24 NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG 70 (71)
Q Consensus 24 ~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g 70 (71)
+...+-++...++..++...+.++|||+|||+|..++++++.++++|
T Consensus 230 G~~~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~ 276 (444)
T PRK14902 230 GLITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTG 276 (444)
T ss_pred ceEEEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCC
Confidence 33444555567777777777778999999999999999999875444
No 55
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.90 E-value=0.011 Score=40.90 Aligned_cols=23 Identities=13% Similarity=0.047 Sum_probs=20.3
Q ss_pred cCCCeEEEeccchHHHHHHHHhh
Q 043521 43 INAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 43 ~~~k~iLEIGT~~GySal~lA~a 65 (71)
.++.+|||||||+|+.+.++++.
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~ 65 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL 65 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc
Confidence 45679999999999999999874
No 56
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=95.84 E-value=0.012 Score=40.35 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=22.7
Q ss_pred HHHHHHHHHhcCCCeEEEeccchHHHHHHHHh
Q 043521 33 AQFLSMLLKLINAKNTMEIGVYTGYSLLYTAL 64 (71)
Q Consensus 33 g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~ 64 (71)
++.+...+...++.+|||||||+|..+..+++
T Consensus 31 a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~ 62 (251)
T PRK10258 31 ADALLAMLPQRKFTHVLDAGCGPGWMSRYWRE 62 (251)
T ss_pred HHHHHHhcCccCCCeEEEeeCCCCHHHHHHHH
Confidence 33333333444678999999999998888765
No 57
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=95.81 E-value=0.015 Score=40.75 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=21.5
Q ss_pred CCCeEEEeccchHHHHHHHHhhCCC
Q 043521 44 NAKNTMEIGVYTGYSLLYTALAIPD 68 (71)
Q Consensus 44 ~~k~iLEIGT~~GySal~lA~al~~ 68 (71)
+..+|||||||+|+.+..+++..++
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~ 109 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPE 109 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhccc
Confidence 4568999999999999999987764
No 58
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=95.81 E-value=0.015 Score=37.19 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=28.5
Q ss_pred HHHHHHHHHh----cCCCeEEEeccchHHHHHHHHhhC
Q 043521 33 AQFLSMLLKL----INAKNTMEIGVYTGYSLLYTALAI 66 (71)
Q Consensus 33 g~~L~~l~~~----~~~k~iLEIGT~~GySal~lA~al 66 (71)
.+++..++.. .++..|+|+|+|.||.+..++..+
T Consensus 10 ~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l 47 (141)
T PF13679_consen 10 AELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLL 47 (141)
T ss_pred HHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHH
Confidence 4666666666 889999999999999999999843
No 59
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=95.78 E-value=0.0096 Score=42.16 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=21.3
Q ss_pred HhcCCCeEEEeccchHHHHHHHHh
Q 043521 41 KLINAKNTMEIGVYTGYSLLYTAL 64 (71)
Q Consensus 41 ~~~~~k~iLEIGT~~GySal~lA~ 64 (71)
...++.+|||||||+|..++++|+
T Consensus 117 ~~~~~~~vLDlGcG~G~~~~~la~ 140 (287)
T PRK12335 117 QTVKPGKALDLGCGQGRNSLYLAL 140 (287)
T ss_pred hccCCCCEEEeCCCCCHHHHHHHH
Confidence 446788999999999999999987
No 60
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=95.76 E-value=0.0097 Score=41.59 Aligned_cols=35 Identities=23% Similarity=0.209 Sum_probs=22.7
Q ss_pred HHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521 36 LSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG 70 (71)
Q Consensus 36 L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g 70 (71)
+..++...++.+|||+|||+|-.+..+++..+++|
T Consensus 39 ~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~ 73 (233)
T PF01209_consen 39 LIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNG 73 (233)
T ss_dssp HHHHHT--S--EEEEET-TTSHHHHHHGGGSS---
T ss_pred HHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCcc
Confidence 33344566778999999999999999999887765
No 61
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=95.74 E-value=0.025 Score=39.25 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=24.8
Q ss_pred HHHHHHHHHH-hcCCCeEEEeccchHHHHHHHHhh
Q 043521 32 EAQFLSMLLK-LINAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 32 ~g~~L~~l~~-~~~~k~iLEIGT~~GySal~lA~a 65 (71)
+...+..+.+ ..+.++|||||||+|+.++.+++.
T Consensus 106 t~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~ 140 (250)
T PRK00517 106 TRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKL 140 (250)
T ss_pred HHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHc
Confidence 3444555544 347789999999999999987753
No 62
>PRK04266 fibrillarin; Provisional
Probab=95.71 E-value=0.012 Score=41.01 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=26.9
Q ss_pred HHHHHHH--HHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521 33 AQFLSML--LKLINAKNTMEIGVYTGYSLLYTALAIP 67 (71)
Q Consensus 33 g~~L~~l--~~~~~~k~iLEIGT~~GySal~lA~al~ 67 (71)
..++..+ +...+-.+|||+|||+|+.++.+++..+
T Consensus 59 ~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~ 95 (226)
T PRK04266 59 AAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE 95 (226)
T ss_pred HHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC
Confidence 4455444 4445666999999999999999999876
No 63
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=95.66 E-value=0.011 Score=40.77 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=22.9
Q ss_pred HhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521 41 KLINAKNTMEIGVYTGYSLLYTALAIP 67 (71)
Q Consensus 41 ~~~~~k~iLEIGT~~GySal~lA~al~ 67 (71)
...++.+|||||||+|..+..+++..|
T Consensus 26 ~~~~~~~vLDlGcG~G~~~~~l~~~~p 52 (255)
T PRK14103 26 GAERARRVVDLGCGPGNLTRYLARRWP 52 (255)
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHHCC
Confidence 345678999999999999999998764
No 64
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=95.65 E-value=0.011 Score=44.56 Aligned_cols=47 Identities=15% Similarity=0.175 Sum_probs=36.1
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521 24 NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG 70 (71)
Q Consensus 24 ~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g 70 (71)
+...+-++..+++..++...+..+|||+|||+|..|+.+|+.++++|
T Consensus 217 G~~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g 263 (431)
T PRK14903 217 GLATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQG 263 (431)
T ss_pred CeEEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCC
Confidence 33344445566777777777778999999999999999999887655
No 65
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=95.64 E-value=0.015 Score=38.50 Aligned_cols=35 Identities=6% Similarity=0.041 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCC
Q 043521 35 FLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDD 69 (71)
Q Consensus 35 ~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~ 69 (71)
+...+....+-.+|||||||+|..+..+++...++
T Consensus 23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~ 57 (188)
T TIGR00438 23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGK 57 (188)
T ss_pred HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCC
Confidence 33334444666799999999999999888776443
No 66
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.63 E-value=0.02 Score=39.38 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=22.8
Q ss_pred hcCCCeEEEeccchHHHHHHHHhhCC
Q 043521 42 LINAKNTMEIGVYTGYSLLYTALAIP 67 (71)
Q Consensus 42 ~~~~k~iLEIGT~~GySal~lA~al~ 67 (71)
..++.+|||+|||+|..++.+++..+
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~ 131 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERP 131 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCC
Confidence 45677999999999999999998875
No 67
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=95.61 E-value=0.024 Score=43.66 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=21.0
Q ss_pred CCeEEEeccchHHHHHHHHhhCCC
Q 043521 45 AKNTMEIGVYTGYSLLYTALAIPD 68 (71)
Q Consensus 45 ~k~iLEIGT~~GySal~lA~al~~ 68 (71)
+.+|||||||+|..++.++...|.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~ 162 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPN 162 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCC
Confidence 468999999999999999987653
No 68
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=95.60 E-value=0.016 Score=42.58 Aligned_cols=30 Identities=27% Similarity=0.379 Sum_probs=25.7
Q ss_pred HHHHHHHHHhcCCCeEEEeccchHHHHHHHHh
Q 043521 33 AQFLSMLLKLINAKNTMEIGVYTGYSLLYTAL 64 (71)
Q Consensus 33 g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~ 64 (71)
-++|..+.+ ++++|||+|||+|..|+..++
T Consensus 153 L~~Le~~~~--~g~~vlDvGcGSGILaIAa~k 182 (300)
T COG2264 153 LEALEKLLK--KGKTVLDVGCGSGILAIAAAK 182 (300)
T ss_pred HHHHHHhhc--CCCEEEEecCChhHHHHHHHH
Confidence 366777766 899999999999999999876
No 69
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=95.59 E-value=0.017 Score=42.06 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=21.4
Q ss_pred HhcCCCeEEEeccchHHHHHHHHhh
Q 043521 41 KLINAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 41 ~~~~~k~iLEIGT~~GySal~lA~a 65 (71)
...+.++|||||||+|+.+..|+..
T Consensus 119 ~~l~g~~VLDIGCG~G~~~~~la~~ 143 (322)
T PRK15068 119 SPLKGRTVLDVGCGNGYHMWRMLGA 143 (322)
T ss_pred CCCCCCEEEEeccCCcHHHHHHHHc
Confidence 3356689999999999999999875
No 70
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=95.52 E-value=0.015 Score=40.24 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=20.5
Q ss_pred cCCCeEEEeccchHHHHHHHHhhC
Q 043521 43 INAKNTMEIGVYTGYSLLYTALAI 66 (71)
Q Consensus 43 ~~~k~iLEIGT~~GySal~lA~al 66 (71)
.+..+|||||||+|..+..+++.+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~ 78 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNI 78 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhc
Confidence 355689999999999999998854
No 71
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=95.49 E-value=0.012 Score=39.35 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.7
Q ss_pred CeEEEeccchHHHHHHHHhhCC
Q 043521 46 KNTMEIGVYTGYSLLYTALAIP 67 (71)
Q Consensus 46 k~iLEIGT~~GySal~lA~al~ 67 (71)
++|||||||+|..+..+++..+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~ 22 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP 22 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC
Confidence 5899999999999999998764
No 72
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=95.46 E-value=0.013 Score=44.16 Aligned_cols=48 Identities=10% Similarity=0.131 Sum_probs=33.4
Q ss_pred CcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521 23 RNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG 70 (71)
Q Consensus 23 ~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g 70 (71)
.+...+-++...+...++...+.++|||+|||+|..|+++++.++++|
T Consensus 229 ~G~~~vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~ 276 (445)
T PRK14904 229 LGLVSVQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRG 276 (445)
T ss_pred CcEEEEeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCc
Confidence 344444444445555555555557999999999999999999876544
No 73
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=95.45 E-value=0.02 Score=38.61 Aligned_cols=37 Identities=14% Similarity=0.095 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521 29 TPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 29 ~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a 65 (71)
.+..-+++...+...+..+|||||||+|..+..+++.
T Consensus 33 ~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~ 69 (233)
T PRK05134 33 NPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL 69 (233)
T ss_pred hHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc
Confidence 3344567777776777889999999999999888764
No 74
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=95.43 E-value=0.038 Score=39.14 Aligned_cols=39 Identities=21% Similarity=0.363 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHh---cCC-CeEEEeccchHHHHHHHHhhCC
Q 043521 29 TPDEAQFLSMLLKL---INA-KNTMEIGVYTGYSLLYTALAIP 67 (71)
Q Consensus 29 ~~~~g~~L~~l~~~---~~~-k~iLEIGT~~GySal~lA~al~ 67 (71)
.+++..++...... .++ .+|||+|||+|..++.++...+
T Consensus 95 r~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~ 137 (284)
T TIGR00536 95 RPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFP 137 (284)
T ss_pred CCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCC
Confidence 34445555554322 233 6899999999999999998765
No 75
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=95.38 E-value=0.033 Score=38.21 Aligned_cols=38 Identities=11% Similarity=-0.010 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHH
Q 043521 26 MLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTA 63 (71)
Q Consensus 26 ~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA 63 (71)
|..+.-...++..+....+..+|||+|||+|..++.++
T Consensus 35 p~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~l 72 (199)
T PRK10909 35 PTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEAL 72 (199)
T ss_pred cCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHH
Confidence 44444445577777666667899999999999999643
No 76
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.37 E-value=0.036 Score=40.10 Aligned_cols=40 Identities=13% Similarity=0.127 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHHh----cCCCeEEEeccchHHHHHHHHhhCC
Q 043521 28 STPDEAQFLSMLLKL----INAKNTMEIGVYTGYSLLYTALAIP 67 (71)
Q Consensus 28 i~~~~g~~L~~l~~~----~~~k~iLEIGT~~GySal~lA~al~ 67 (71)
..+++..++...+.. .++++|||+|||+|..++.+++..|
T Consensus 113 pr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p 156 (307)
T PRK11805 113 PRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFP 156 (307)
T ss_pred CCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCC
Confidence 334455555544331 2237899999999999999998765
No 77
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=95.35 E-value=0.022 Score=38.38 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=20.6
Q ss_pred hcCCCeEEEeccchHHHHHHHHhh
Q 043521 42 LINAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 42 ~~~~k~iLEIGT~~GySal~lA~a 65 (71)
..+.++|||||||+|..+.++++.
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~ 76 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR 76 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC
Confidence 345789999999999999999864
No 78
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=95.28 E-value=0.042 Score=40.96 Aligned_cols=39 Identities=15% Similarity=0.113 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHHh---cCCCeEEEeccchHHHHHHHHhhC
Q 043521 28 STPDEAQFLSMLLKL---INAKNTMEIGVYTGYSLLYTALAI 66 (71)
Q Consensus 28 i~~~~g~~L~~l~~~---~~~k~iLEIGT~~GySal~lA~al 66 (71)
....+.+-+..+++. .+..+|||||||+|..+..+++..
T Consensus 148 L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~ 189 (383)
T PRK11705 148 LEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY 189 (383)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC
Confidence 344444555555554 445699999999999999998754
No 79
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=95.24 E-value=0.02 Score=42.94 Aligned_cols=35 Identities=17% Similarity=0.103 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521 34 QFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPD 68 (71)
Q Consensus 34 ~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~ 68 (71)
++|-..+......+|||+|||+|..++++++..|.
T Consensus 218 rllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~ 252 (378)
T PRK15001 218 RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQ 252 (378)
T ss_pred HHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCC
Confidence 44433333333469999999999999999987653
No 80
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=95.23 E-value=0.031 Score=39.65 Aligned_cols=29 Identities=21% Similarity=0.188 Sum_probs=24.4
Q ss_pred HHhcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521 40 LKLINAKNTMEIGVYTGYSLLYTALAIPD 68 (71)
Q Consensus 40 ~~~~~~k~iLEIGT~~GySal~lA~al~~ 68 (71)
++..+.++|||||||+|..++.+++..|.
T Consensus 145 ~~~~~~~~vlDiG~G~G~~~~~~~~~~p~ 173 (306)
T TIGR02716 145 AKLDGVKKMIDVGGGIGDISAAMLKHFPE 173 (306)
T ss_pred cCCCCCCEEEEeCCchhHHHHHHHHHCCC
Confidence 34456789999999999999999998764
No 81
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=95.21 E-value=0.05 Score=37.12 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=20.7
Q ss_pred CCCeEEEeccchHHHHHHHHhhCC
Q 043521 44 NAKNTMEIGVYTGYSLLYTALAIP 67 (71)
Q Consensus 44 ~~k~iLEIGT~~GySal~lA~al~ 67 (71)
+..+|||||||+|..+..+++.++
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~ 76 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNIN 76 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcC
Confidence 556899999999999999998753
No 82
>PLN02244 tocopherol O-methyltransferase
Probab=95.12 E-value=0.04 Score=40.09 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=26.1
Q ss_pred HHHHHHHHHHh--------cCCCeEEEeccchHHHHHHHHhhC
Q 043521 32 EAQFLSMLLKL--------INAKNTMEIGVYTGYSLLYTALAI 66 (71)
Q Consensus 32 ~g~~L~~l~~~--------~~~k~iLEIGT~~GySal~lA~al 66 (71)
+-+++..+++. .++++|||||||+|..+..+++..
T Consensus 98 q~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~ 140 (340)
T PLN02244 98 QIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY 140 (340)
T ss_pred HHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc
Confidence 34555555543 356799999999999999999854
No 83
>PRK05785 hypothetical protein; Provisional
Probab=95.06 E-value=0.035 Score=38.27 Aligned_cols=33 Identities=12% Similarity=0.146 Sum_probs=24.4
Q ss_pred HHHHHHHHh-cCCCeEEEeccchHHHHHHHHhhC
Q 043521 34 QFLSMLLKL-INAKNTMEIGVYTGYSLLYTALAI 66 (71)
Q Consensus 34 ~~L~~l~~~-~~~k~iLEIGT~~GySal~lA~al 66 (71)
+++..+... .++.+|||||||+|..+..+++..
T Consensus 40 ~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~ 73 (226)
T PRK05785 40 ELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF 73 (226)
T ss_pred HHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc
Confidence 344444442 357899999999999999988753
No 84
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=95.06 E-value=0.023 Score=42.47 Aligned_cols=38 Identities=16% Similarity=0.120 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521 30 PDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIP 67 (71)
Q Consensus 30 ~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~ 67 (71)
++...++...+...+..+|||+|||+|..|+.+++.++
T Consensus 224 d~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~ 261 (426)
T TIGR00563 224 DASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP 261 (426)
T ss_pred CHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC
Confidence 34456666666666678999999999999999999886
No 85
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=95.05 E-value=0.028 Score=39.57 Aligned_cols=38 Identities=8% Similarity=0.153 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521 33 AQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG 70 (71)
Q Consensus 33 g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g 70 (71)
..+...++...+..+|||+|+++|.-|+.+|+.+++.|
T Consensus 60 s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g 97 (264)
T TIGR00446 60 SMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEG 97 (264)
T ss_pred HHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCC
Confidence 44444444445557899999999999999999887654
No 86
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=95.03 E-value=0.035 Score=38.84 Aligned_cols=36 Identities=28% Similarity=0.407 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcCC-C-eEEEeccchHHHHHHHHhhCCC
Q 043521 33 AQFLSMLLKLINA-K-NTMEIGVYTGYSLLYTALAIPD 68 (71)
Q Consensus 33 g~~L~~l~~~~~~-k-~iLEIGT~~GySal~lA~al~~ 68 (71)
.-++..|.+..+. . +|||||+|+|--+.++|+.+|.
T Consensus 12 ~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~ 49 (204)
T PF06080_consen 12 DPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPH 49 (204)
T ss_pred hHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCC
Confidence 3444455444332 2 5999999999999999999984
No 87
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=94.93 E-value=0.023 Score=42.66 Aligned_cols=41 Identities=20% Similarity=0.153 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521 30 PDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG 70 (71)
Q Consensus 30 ~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g 70 (71)
+...+++..++...+..+|||+|||+|.-|+.+++.++++|
T Consensus 238 d~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g 278 (434)
T PRK14901 238 DRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQG 278 (434)
T ss_pred CHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCc
Confidence 34455666666656668999999999999999999877654
No 88
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=94.85 E-value=0.033 Score=41.11 Aligned_cols=39 Identities=18% Similarity=0.155 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521 28 STPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIP 67 (71)
Q Consensus 28 i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~ 67 (71)
++..+--++..|-....- +|||+|||.|+.++++|+..|
T Consensus 143 lD~GS~lLl~~l~~~~~~-~vlDlGCG~Gvlg~~la~~~p 181 (300)
T COG2813 143 LDKGSRLLLETLPPDLGG-KVLDLGCGYGVLGLVLAKKSP 181 (300)
T ss_pred cChHHHHHHHhCCccCCC-cEEEeCCCccHHHHHHHHhCC
Confidence 555555666666666555 999999999999999999887
No 89
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.80 E-value=0.031 Score=39.34 Aligned_cols=29 Identities=28% Similarity=0.243 Sum_probs=24.7
Q ss_pred HhcCCCeEEEeccchHHHHHHHHhhCCCC
Q 043521 41 KLINAKNTMEIGVYTGYSLLYTALAIPDD 69 (71)
Q Consensus 41 ~~~~~k~iLEIGT~~GySal~lA~al~~~ 69 (71)
+..+|+-++|||||+|+-+-.+++.+.++
T Consensus 40 ~~~~~~i~lEIG~GSGvvstfL~~~i~~~ 68 (209)
T KOG3191|consen 40 KGHNPEICLEIGCGSGVVSTFLASVIGPQ 68 (209)
T ss_pred hhcCceeEEEecCCcchHHHHHHHhcCCC
Confidence 34559999999999999999999988754
No 90
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=94.79 E-value=0.069 Score=37.98 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=23.3
Q ss_pred HHHHHHHHHHh-cCCCeEEEeccchHHHHHHHHh
Q 043521 32 EAQFLSMLLKL-INAKNTMEIGVYTGYSLLYTAL 64 (71)
Q Consensus 32 ~g~~L~~l~~~-~~~k~iLEIGT~~GySal~lA~ 64 (71)
+.-.+..+-+. .+.++|||+|||+|+.++.+++
T Consensus 146 t~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~ 179 (288)
T TIGR00406 146 TSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALK 179 (288)
T ss_pred HHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHH
Confidence 33334444332 3557999999999999998876
No 91
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=94.78 E-value=0.081 Score=38.69 Aligned_cols=45 Identities=18% Similarity=0.177 Sum_probs=33.9
Q ss_pred cCcCCCCCHHHHHHHHHHHHh---cCCCeEEEeccchHHHHHHHHhhC
Q 043521 22 RRNHMLSTPDEAQFLSMLLKL---INAKNTMEIGVYTGYSLLYTALAI 66 (71)
Q Consensus 22 ~~~~~~i~~~~g~~L~~l~~~---~~~k~iLEIGT~~GySal~lA~al 66 (71)
+.+.+..+.+|-+-+..++.. .+-.++||||||-|..++++|+.-
T Consensus 47 ~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y 94 (283)
T COG2230 47 EDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY 94 (283)
T ss_pred CCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc
Confidence 445566777776555555554 556699999999999999999875
No 92
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=94.73 E-value=0.053 Score=37.35 Aligned_cols=22 Identities=9% Similarity=-0.076 Sum_probs=19.4
Q ss_pred CCCeEEEeccchHHHHHHHHhh
Q 043521 44 NAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 44 ~~k~iLEIGT~~GySal~lA~a 65 (71)
+..+||++|||.|..++|||+.
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~ 55 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ 55 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC
Confidence 4469999999999999999963
No 93
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=94.71 E-value=0.069 Score=35.56 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHh----cCCCeEEEeccchHHHHHHHHhh
Q 043521 29 TPDEAQFLSMLLKL----INAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 29 ~~~~g~~L~~l~~~----~~~k~iLEIGT~~GySal~lA~a 65 (71)
.+..-+++...+.. .++.+||||||++|+.+..+++.
T Consensus 26 ~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~ 66 (224)
T TIGR01983 26 NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARL 66 (224)
T ss_pred hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhc
Confidence 44455677766664 34789999999999999988764
No 94
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=94.68 E-value=0.092 Score=37.57 Aligned_cols=39 Identities=21% Similarity=0.093 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHHhc-----CCCeEEEeccchHHHHHHHHhhCC
Q 043521 29 TPDEAQFLSMLLKLI-----NAKNTMEIGVYTGYSLLYTALAIP 67 (71)
Q Consensus 29 ~~~~g~~L~~l~~~~-----~~k~iLEIGT~~GySal~lA~al~ 67 (71)
.+.+-++|...++.. ++.+|||+|||+|.-+..++++++
T Consensus 43 tr~E~~il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~ 86 (301)
T TIGR03438 43 TRTEAAILERHADEIAAATGAGCELVELGSGSSRKTRLLLDALR 86 (301)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhc
Confidence 444556666555532 457999999999999999998875
No 95
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=94.66 E-value=0.028 Score=39.00 Aligned_cols=30 Identities=17% Similarity=0.373 Sum_probs=23.8
Q ss_pred HhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521 41 KLINAKNTMEIGVYTGYSLLYTALAIPDDG 70 (71)
Q Consensus 41 ~~~~~k~iLEIGT~~GySal~lA~al~~~g 70 (71)
...+.++|||||||+|..++.+++..++++
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~ 103 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTG 103 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCC
Confidence 345667999999999999998887766543
No 96
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=94.64 E-value=0.02 Score=42.47 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=20.7
Q ss_pred CCCeEEEeccchHHHHHHHHhhCC
Q 043521 44 NAKNTMEIGVYTGYSLLYTALAIP 67 (71)
Q Consensus 44 ~~k~iLEIGT~~GySal~lA~al~ 67 (71)
+..+|||||||+|..++.+++..+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~ 136 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVD 136 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCC
Confidence 456999999999999999988764
No 97
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=94.64 E-value=0.047 Score=41.40 Aligned_cols=26 Identities=38% Similarity=0.497 Sum_probs=22.5
Q ss_pred cCCCeEEEeccchHHHHHHHHhhCCC
Q 043521 43 INAKNTMEIGVYTGYSLLYTALAIPD 68 (71)
Q Consensus 43 ~~~k~iLEIGT~~GySal~lA~al~~ 68 (71)
...+.+||||||+|..++.+|+..|+
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~ 146 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPN 146 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCC
Confidence 34468999999999999999998764
No 98
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=94.64 E-value=0.041 Score=35.84 Aligned_cols=23 Identities=17% Similarity=-0.010 Sum_probs=19.8
Q ss_pred cCCCeEEEeccchHHHHHHHHhh
Q 043521 43 INAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 43 ~~~k~iLEIGT~~GySal~lA~a 65 (71)
.+..+|||||+|+|..+..+++.
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~ 34 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLER 34 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhc
Confidence 34468999999999999999875
No 99
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=94.59 E-value=0.084 Score=38.20 Aligned_cols=40 Identities=18% Similarity=0.069 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521 26 MLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 26 ~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a 65 (71)
..+++...+.+-..+...+..+|||||||+|..|..+++.
T Consensus 18 FL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~ 57 (294)
T PTZ00338 18 ILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL 57 (294)
T ss_pred ccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh
Confidence 3455555544444445556678999999999999999875
No 100
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=94.50 E-value=0.033 Score=41.71 Aligned_cols=40 Identities=18% Similarity=0.113 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521 28 STPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIP 67 (71)
Q Consensus 28 i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~ 67 (71)
+-+....+...++...+..+|||+|||+|..++.+++..+
T Consensus 228 iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~ 267 (427)
T PRK10901 228 VQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAP 267 (427)
T ss_pred EECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcC
Confidence 4444455565666666778999999999999999998775
No 101
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=94.48 E-value=0.045 Score=38.46 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=21.2
Q ss_pred HhcCCCeEEEeccchHHHHHHHHhh
Q 043521 41 KLINAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 41 ~~~~~k~iLEIGT~~GySal~lA~a 65 (71)
...+..+|||||||+|..+..+++.
T Consensus 49 ~l~~~~~VLDiGcG~G~~a~~la~~ 73 (263)
T PTZ00098 49 ELNENSKVLDIGSGLGGGCKYINEK 73 (263)
T ss_pred CCCCCCEEEEEcCCCChhhHHHHhh
Confidence 4566679999999999999999864
No 102
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=94.43 E-value=0.098 Score=36.30 Aligned_cols=47 Identities=15% Similarity=0.094 Sum_probs=32.6
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCCC
Q 043521 24 NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71 (71)
Q Consensus 24 ~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g~ 71 (71)
+.|..-++...+.-...+..+-..++|||+++|.-++.+| ...+.++
T Consensus 14 ~~p~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~ 60 (187)
T COG2242 14 GGPMTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGR 60 (187)
T ss_pred CCCCcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCce
Confidence 3454444445555555566667789999999999999999 4454553
No 103
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=94.34 E-value=0.091 Score=38.30 Aligned_cols=35 Identities=23% Similarity=0.388 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhcC-CCeEEEeccchHHHHHHHHh
Q 043521 30 PDEAQFLSMLLKLIN-AKNTMEIGVYTGYSLLYTAL 64 (71)
Q Consensus 30 ~~~g~~L~~l~~~~~-~k~iLEIGT~~GySal~lA~ 64 (71)
+.+.--|..|-+... .++|||||||+|..++.-++
T Consensus 146 ~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~k 181 (295)
T PF06325_consen 146 PTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAK 181 (295)
T ss_dssp HHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHH
Confidence 344455555555544 47999999999999998775
No 104
>PRK04148 hypothetical protein; Provisional
Probab=94.32 E-value=0.072 Score=35.03 Aligned_cols=33 Identities=15% Similarity=0.078 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcCCCeEEEeccchHH-HHHHHHh
Q 043521 32 EAQFLSMLLKLINAKNTMEIGVYTGY-SLLYTAL 64 (71)
Q Consensus 32 ~g~~L~~l~~~~~~k~iLEIGT~~Gy-Sal~lA~ 64 (71)
-++++.......+.++|||||+|.|. -+..|++
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~ 37 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKE 37 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHH
Confidence 35555555555566889999999997 5656664
No 105
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=94.32 E-value=0.069 Score=35.44 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=19.3
Q ss_pred CCCeEEEeccchHHHHHHHHhhC
Q 043521 44 NAKNTMEIGVYTGYSLLYTALAI 66 (71)
Q Consensus 44 ~~k~iLEIGT~~GySal~lA~al 66 (71)
+..+|||||||+|..+..+++..
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~ 35 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK 35 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc
Confidence 45699999999999999887643
No 106
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=94.12 E-value=0.053 Score=37.42 Aligned_cols=32 Identities=22% Similarity=0.435 Sum_probs=24.0
Q ss_pred HHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521 33 AQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 33 g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a 65 (71)
.+++.. +...++.++|++|||.|-.|+++|+.
T Consensus 20 s~v~~a-~~~~~~g~~LDlgcG~GRNalyLA~~ 51 (192)
T PF03848_consen 20 SEVLEA-VPLLKPGKALDLGCGEGRNALYLASQ 51 (192)
T ss_dssp HHHHHH-CTTS-SSEEEEES-TTSHHHHHHHHT
T ss_pred HHHHHH-HhhcCCCcEEEcCCCCcHHHHHHHHC
Confidence 444443 56778999999999999999999973
No 107
>PRK00811 spermidine synthase; Provisional
Probab=94.07 E-value=0.053 Score=38.68 Aligned_cols=23 Identities=26% Similarity=0.111 Sum_probs=20.8
Q ss_pred cCCCeEEEeccchHHHHHHHHhh
Q 043521 43 INAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 43 ~~~k~iLEIGT~~GySal~lA~a 65 (71)
.+|++||+||+|.|..+.++++.
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~ 97 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKH 97 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcC
Confidence 57899999999999999999875
No 108
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=94.06 E-value=0.069 Score=39.33 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521 28 STPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIP 67 (71)
Q Consensus 28 i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~ 67 (71)
++..+..++..+ ......+|||+|||+|+.++.+++..|
T Consensus 181 lD~gt~lLl~~l-~~~~~g~VLDlGCG~G~ls~~la~~~p 219 (342)
T PRK09489 181 LDVGSQLLLSTL-TPHTKGKVLDVGCGAGVLSAVLARHSP 219 (342)
T ss_pred CCHHHHHHHHhc-cccCCCeEEEeccCcCHHHHHHHHhCC
Confidence 333333444434 334456899999999999999998755
No 109
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=93.88 E-value=0.091 Score=37.38 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=27.9
Q ss_pred HHHHHHHHHhc---CCCeEEEeccchHHHHHHHHhhCC
Q 043521 33 AQFLSMLLKLI---NAKNTMEIGVYTGYSLLYTALAIP 67 (71)
Q Consensus 33 g~~L~~l~~~~---~~k~iLEIGT~~GySal~lA~al~ 67 (71)
-.+-..++... ++.+|||||||||-.|+.+++..+
T Consensus 37 ~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g 74 (238)
T COG2226 37 RLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVG 74 (238)
T ss_pred HHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC
Confidence 44555555554 578999999999999999999876
No 110
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=93.85 E-value=0.11 Score=38.79 Aligned_cols=42 Identities=12% Similarity=0.359 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHHHHh------cCCCeEEEeccchHHHHHHHHhhCCC
Q 043521 27 LSTPDEAQFLSMLLKL------INAKNTMEIGVYTGYSLLYTALAIPD 68 (71)
Q Consensus 27 ~i~~~~g~~L~~l~~~------~~~k~iLEIGT~~GySal~lA~al~~ 68 (71)
+--+|+=++..+.+.. .++..++|+|||+|..++.|+..+|.
T Consensus 125 IPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~ 172 (328)
T KOG2904|consen 125 IPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQ 172 (328)
T ss_pred ecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCC
Confidence 3456666666666554 23447999999999999999999984
No 111
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=93.76 E-value=0.11 Score=36.55 Aligned_cols=23 Identities=13% Similarity=-0.013 Sum_probs=20.2
Q ss_pred CCeEEEeccchHHHHHHHHhhCC
Q 043521 45 AKNTMEIGVYTGYSLLYTALAIP 67 (71)
Q Consensus 45 ~k~iLEIGT~~GySal~lA~al~ 67 (71)
+.+|||+|||+|..++.+++..+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~ 109 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD 109 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC
Confidence 45899999999999999998765
No 112
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=93.75 E-value=0.069 Score=38.12 Aligned_cols=40 Identities=23% Similarity=0.225 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521 29 TPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPD 68 (71)
Q Consensus 29 ~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~ 68 (71)
.|..--.+++|+-..+|..|+|+|+..|-|++|.|.-+-.
T Consensus 54 ~p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s 93 (237)
T COG3510 54 SPSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMIS 93 (237)
T ss_pred CHHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHh
Confidence 4555788999999999999999999999999999975543
No 113
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=93.71 E-value=0.051 Score=39.31 Aligned_cols=31 Identities=23% Similarity=0.271 Sum_probs=26.8
Q ss_pred HHHHhcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521 38 MLLKLINAKNTMEIGVYTGYSLLYTALAIPD 68 (71)
Q Consensus 38 ~l~~~~~~k~iLEIGT~~GySal~lA~al~~ 68 (71)
..+-..+|++|+|+|||.|-||-.+++.-|.
T Consensus 24 a~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~ 54 (257)
T COG4106 24 ARVPLERPRRVVDLGCGPGNSTELLARRWPD 54 (257)
T ss_pred hhCCccccceeeecCCCCCHHHHHHHHhCCC
Confidence 4455678999999999999999999998774
No 114
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=93.70 E-value=0.084 Score=37.17 Aligned_cols=29 Identities=31% Similarity=0.230 Sum_probs=24.0
Q ss_pred HhcCCCeEEEeccchHHHHHHHHhhCCCC
Q 043521 41 KLINAKNTMEIGVYTGYSLLYTALAIPDD 69 (71)
Q Consensus 41 ~~~~~k~iLEIGT~~GySal~lA~al~~~ 69 (71)
.......+||||+|.|-+.+.||..-|+.
T Consensus 45 ~~~~~pi~lEIGfG~G~~l~~~A~~nP~~ 73 (227)
T COG0220 45 GNNNAPIVLEIGFGMGEFLVEMAKKNPEK 73 (227)
T ss_pred CCCCCcEEEEECCCCCHHHHHHHHHCCCC
Confidence 33344689999999999999999998864
No 115
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=93.63 E-value=0.061 Score=39.37 Aligned_cols=23 Identities=13% Similarity=0.391 Sum_probs=19.7
Q ss_pred cCCCeEEEeccchHHHHHHHHhh
Q 043521 43 INAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 43 ~~~k~iLEIGT~~GySal~lA~a 65 (71)
.+.++|||||||+|+.+..++..
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~ 142 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGH 142 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHc
Confidence 45589999999999999888764
No 116
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=93.61 E-value=0.059 Score=33.51 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=18.6
Q ss_pred eEEEeccchHHHHHHHHhhCC
Q 043521 47 NTMEIGVYTGYSLLYTALAIP 67 (71)
Q Consensus 47 ~iLEIGT~~GySal~lA~al~ 67 (71)
.+||||++.|+.++++++..+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~ 21 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA 21 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC
Confidence 479999999999999998755
No 117
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=93.42 E-value=0.064 Score=39.34 Aligned_cols=21 Identities=19% Similarity=0.066 Sum_probs=18.3
Q ss_pred CCCeEEEeccchHHHHHHHHh
Q 043521 44 NAKNTMEIGVYTGYSLLYTAL 64 (71)
Q Consensus 44 ~~k~iLEIGT~~GySal~lA~ 64 (71)
+..+|||||||+|+.+..+++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~ 151 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR 151 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH
Confidence 345899999999999999886
No 118
>PRK06922 hypothetical protein; Provisional
Probab=93.35 E-value=0.086 Score=42.63 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521 35 FLSMLLKLINAKNTMEIGVYTGYSLLYTALAIP 67 (71)
Q Consensus 35 ~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~ 67 (71)
+...+....+..+|||||||+|..+..+++..|
T Consensus 409 ~k~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~P 441 (677)
T PRK06922 409 DKRIILDYIKGDTIVDVGAGGGVMLDMIEEETE 441 (677)
T ss_pred HHHHHhhhcCCCEEEEeCCCCCHHHHHHHHhCC
Confidence 334455666788999999999999999988765
No 119
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=93.35 E-value=0.059 Score=31.98 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=16.0
Q ss_pred EEEeccchHHHHHHHHhhC
Q 043521 48 TMEIGVYTGYSLLYTALAI 66 (71)
Q Consensus 48 iLEIGT~~GySal~lA~al 66 (71)
|||+|||+|-.+..+++..
T Consensus 1 ILDlgcG~G~~~~~l~~~~ 19 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF 19 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS
T ss_pred CEEeecCCcHHHHHHHHHh
Confidence 7999999999999999876
No 120
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=93.31 E-value=0.22 Score=38.31 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHh-cCCCeEEEeccchHHHHHHHHhhCC
Q 043521 29 TPDEAQFLSMLLKL-INAKNTMEIGVYTGYSLLYTALAIP 67 (71)
Q Consensus 29 ~~~~g~~L~~l~~~-~~~k~iLEIGT~~GySal~lA~al~ 67 (71)
.+++-.++..+... .+..+|||||||+|..++.+++..+
T Consensus 235 RpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p 274 (423)
T PRK14966 235 RPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERP 274 (423)
T ss_pred CccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCC
Confidence 34444555555443 3446899999999999999987654
No 121
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=93.26 E-value=0.12 Score=37.15 Aligned_cols=40 Identities=15% Similarity=0.069 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHH----HHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521 26 MLSTPDEAQFLSM----LLKLINAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 26 ~~i~~~~g~~L~~----l~~~~~~k~iLEIGT~~GySal~lA~a 65 (71)
.++.+...+-+.. ++...++++|||+|||+|..++.+|+.
T Consensus 151 ~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~ 194 (315)
T PRK03522 151 FQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATP 194 (315)
T ss_pred eecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc
Confidence 3455555444333 233346789999999999999999973
No 122
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=93.21 E-value=0.12 Score=38.72 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=21.3
Q ss_pred hcCCCeEEEeccchHHHHHHHHhhC
Q 043521 42 LINAKNTMEIGVYTGYSLLYTALAI 66 (71)
Q Consensus 42 ~~~~k~iLEIGT~~GySal~lA~al 66 (71)
..+..+|||||||+|..++.+++..
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~ 288 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENF 288 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhc
Confidence 4556799999999999999998754
No 123
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=93.18 E-value=0.1 Score=36.68 Aligned_cols=24 Identities=25% Similarity=0.066 Sum_probs=20.6
Q ss_pred cCCCeEEEeccchHHHHHHHHhhC
Q 043521 43 INAKNTMEIGVYTGYSLLYTALAI 66 (71)
Q Consensus 43 ~~~k~iLEIGT~~GySal~lA~al 66 (71)
.+|++|||||+|.|..+..+++..
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~ 94 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHK 94 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCC
Confidence 578899999999999988887654
No 124
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=93.10 E-value=0.073 Score=38.08 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHh---cCCCeEEEeccchHHHHHHHHhh
Q 043521 28 STPDEAQFLSMLLKL---INAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 28 i~~~~g~~L~~l~~~---~~~k~iLEIGT~~GySal~lA~a 65 (71)
+...+-+-+..++.. .+-.+|||||||-|-.++++|+.
T Consensus 43 Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~ 83 (273)
T PF02353_consen 43 LEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAER 83 (273)
T ss_dssp HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHH
Confidence 344455555555554 45559999999999999999986
No 125
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.09 E-value=0.19 Score=36.10 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=28.8
Q ss_pred HHHHHHHHHH-hcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521 32 EAQFLSMLLK-LINAKNTMEIGVYTGYSLLYTALAIPDDG 70 (71)
Q Consensus 32 ~g~~L~~l~~-~~~~k~iLEIGT~~GySal~lA~al~~~g 70 (71)
-...+..|-- +.+--+.|+||+|+||.+-++++-+..+|
T Consensus 69 ha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g 108 (237)
T KOG1661|consen 69 HATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATG 108 (237)
T ss_pred HHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCC
Confidence 3556666653 44455999999999999999996665554
No 126
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=93.01 E-value=0.31 Score=33.63 Aligned_cols=21 Identities=10% Similarity=0.014 Sum_probs=18.8
Q ss_pred CCCeEEEeccchHHHHHHHHh
Q 043521 44 NAKNTMEIGVYTGYSLLYTAL 64 (71)
Q Consensus 44 ~~k~iLEIGT~~GySal~lA~ 64 (71)
+..+||++|||.|..++|||+
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~ 57 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAE 57 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHh
Confidence 346999999999999999996
No 127
>PRK01581 speE spermidine synthase; Validated
Probab=92.94 E-value=0.12 Score=39.14 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=21.8
Q ss_pred HHhcCCCeEEEeccchHHHHHHHHhh
Q 043521 40 LKLINAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 40 ~~~~~~k~iLEIGT~~GySal~lA~a 65 (71)
+...+|++||+||+|.|+++..+++.
T Consensus 146 ~~h~~PkrVLIIGgGdG~tlrelLk~ 171 (374)
T PRK01581 146 SKVIDPKRVLILGGGDGLALREVLKY 171 (374)
T ss_pred HhCCCCCEEEEECCCHHHHHHHHHhc
Confidence 34588999999999999988877764
No 128
>PTZ00146 fibrillarin; Provisional
Probab=92.91 E-value=0.088 Score=38.60 Aligned_cols=27 Identities=11% Similarity=0.238 Sum_probs=23.4
Q ss_pred CCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521 44 NAKNTMEIGVYTGYSLLYTALAIPDDG 70 (71)
Q Consensus 44 ~~k~iLEIGT~~GySal~lA~al~~~g 70 (71)
+-.+|||+||++|+.+..+|..+.++|
T Consensus 132 pG~~VLDLGaG~G~~t~~lAdiVG~~G 158 (293)
T PTZ00146 132 PGSKVLYLGAASGTTVSHVSDLVGPEG 158 (293)
T ss_pred CCCEEEEeCCcCCHHHHHHHHHhCCCC
Confidence 445899999999999999999887665
No 129
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=92.77 E-value=0.13 Score=38.16 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCCC
Q 043521 32 EAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71 (71)
Q Consensus 32 ~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g~ 71 (71)
..+++-++....+-.+|+|-|||.|.-+.++++++.|.|+
T Consensus 93 Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGh 132 (314)
T KOG2915|consen 93 DIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGH 132 (314)
T ss_pred cHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcc
Confidence 3566777777788889999999999999999999998875
No 130
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=92.73 E-value=0.1 Score=35.49 Aligned_cols=22 Identities=36% Similarity=0.344 Sum_probs=19.5
Q ss_pred eEEEeccchHHHHHHHHhhCCC
Q 043521 47 NTMEIGVYTGYSLLYTALAIPD 68 (71)
Q Consensus 47 ~iLEIGT~~GySal~lA~al~~ 68 (71)
.+||||||.|-..+.+|..-|+
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd 41 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPD 41 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTT
T ss_pred eEEEecCCCCHHHHHHHHHCCC
Confidence 7899999999999999998875
No 131
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=92.72 E-value=0.25 Score=36.49 Aligned_cols=24 Identities=13% Similarity=0.072 Sum_probs=19.1
Q ss_pred CCCeEEEeccchHHHHHHHHhhCC
Q 043521 44 NAKNTMEIGVYTGYSLLYTALAIP 67 (71)
Q Consensus 44 ~~k~iLEIGT~~GySal~lA~al~ 67 (71)
+..++||||||+|.....++...+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~ 137 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY 137 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC
Confidence 357899999999988888776544
No 132
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=92.59 E-value=0.086 Score=29.06 Aligned_cols=18 Identities=28% Similarity=0.290 Sum_probs=16.3
Q ss_pred eEEEeccchHHHHHHHHh
Q 043521 47 NTMEIGVYTGYSLLYTAL 64 (71)
Q Consensus 47 ~iLEIGT~~GySal~lA~ 64 (71)
+++||||+.|..+..+++
T Consensus 1 ~ildig~G~G~~~~~~~~ 18 (107)
T cd02440 1 RVLDLGCGTGALALALAS 18 (107)
T ss_pred CeEEEcCCccHHHHHHhc
Confidence 589999999999998887
No 133
>PLN02672 methionine S-methyltransferase
Probab=92.56 E-value=0.27 Score=41.65 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=20.7
Q ss_pred CCeEEEeccchHHHHHHHHhhCC
Q 043521 45 AKNTMEIGVYTGYSLLYTALAIP 67 (71)
Q Consensus 45 ~k~iLEIGT~~GySal~lA~al~ 67 (71)
.++|||+|||+|+.++.+++..+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~ 141 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWL 141 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCC
Confidence 36899999999999999998776
No 134
>PRK14967 putative methyltransferase; Provisional
Probab=92.53 E-value=0.32 Score=33.03 Aligned_cols=21 Identities=14% Similarity=0.196 Sum_probs=18.6
Q ss_pred CCeEEEeccchHHHHHHHHhh
Q 043521 45 AKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 45 ~k~iLEIGT~~GySal~lA~a 65 (71)
..+|||+|||+|..++.+++.
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~ 57 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAA 57 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHc
Confidence 369999999999999999874
No 135
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=92.41 E-value=0.1 Score=36.61 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=19.4
Q ss_pred CCCeEEEeccchHHHHHHHHhh
Q 043521 44 NAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 44 ~~k~iLEIGT~~GySal~lA~a 65 (71)
+-++||||||++|+.+.++++.
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ 96 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK 96 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc
Confidence 4558999999999999999875
No 136
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=92.35 E-value=0.13 Score=38.43 Aligned_cols=24 Identities=21% Similarity=0.086 Sum_probs=20.4
Q ss_pred hcCCCeEEEeccchHHHHHHHHhh
Q 043521 42 LINAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 42 ~~~~k~iLEIGT~~GySal~lA~a 65 (71)
..+.++|||||||+|..+..+++.
T Consensus 35 ~~~~~~vLDlGcG~G~~~~~la~~ 58 (475)
T PLN02336 35 PYEGKSVLELGAGIGRFTGELAKK 58 (475)
T ss_pred ccCCCEEEEeCCCcCHHHHHHHhh
Confidence 345578999999999999999875
No 137
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=92.23 E-value=0.43 Score=33.38 Aligned_cols=56 Identities=18% Similarity=0.123 Sum_probs=42.0
Q ss_pred HHHhhhhhhhhcC--cCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhC
Q 043521 11 FVYFSQHIDGMRR--NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAI 66 (71)
Q Consensus 11 ~~~~~~~~~~~~~--~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al 66 (71)
+.+|++..+.-.. .....++..++-+...+--.+...|||+|.|+|.-|-.+.+..
T Consensus 13 ~~F~k~wi~~PrtVGaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~g 70 (194)
T COG3963 13 ISFFKGWIDNPRTVGAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRG 70 (194)
T ss_pred HHHHHHHhcCCceeeeecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcC
Confidence 4566777765333 3456677778888888888888899999999999999866543
No 138
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=92.05 E-value=0.24 Score=39.59 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=23.3
Q ss_pred HHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521 39 LLKLINAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 39 l~~~~~~k~iLEIGT~~GySal~lA~a 65 (71)
+.+..+.++|||+||++|..++++|.+
T Consensus 533 ~~~~~~g~rVLDlf~gtG~~sl~aa~~ 559 (702)
T PRK11783 533 IGQMAKGKDFLNLFAYTGTASVHAALG 559 (702)
T ss_pred HHHhcCCCeEEEcCCCCCHHHHHHHHC
Confidence 455567899999999999999999975
No 139
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=91.99 E-value=0.33 Score=35.55 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=19.4
Q ss_pred CCCeEEEeccchHHHHHHHHhh
Q 043521 44 NAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 44 ~~k~iLEIGT~~GySal~lA~a 65 (71)
+..+|||||||+|..++.+++.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~ 165 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE 165 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC
Confidence 4579999999999999999863
No 140
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=91.78 E-value=0.11 Score=39.06 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=19.8
Q ss_pred HhcCCCeEEEeccchHHHHHHHHh
Q 043521 41 KLINAKNTMEIGVYTGYSLLYTAL 64 (71)
Q Consensus 41 ~~~~~k~iLEIGT~~GySal~lA~ 64 (71)
+..+.++|||+||++|..++..+.
T Consensus 217 ~~~~g~rVLDlfsgtG~~~l~aa~ 240 (396)
T PRK15128 217 RYVENKRVLNCFSYTGGFAVSALM 240 (396)
T ss_pred HhcCCCeEEEeccCCCHHHHHHHh
Confidence 445678999999999999887654
No 141
>PLN02366 spermidine synthase
Probab=91.62 E-value=0.18 Score=36.80 Aligned_cols=37 Identities=24% Similarity=0.261 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHHH-----hcCCCeEEEeccchHHHHHHHHhh
Q 043521 29 TPDEAQFLSMLLK-----LINAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 29 ~~~~g~~L~~l~~-----~~~~k~iLEIGT~~GySal~lA~a 65 (71)
.+++...-.++++ ..+|++||+||+|.|.++.++++.
T Consensus 71 ~~de~~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~~~rellk~ 112 (308)
T PLN02366 71 ERDECAYQEMITHLPLCSIPNPKKVLVVGGGDGGVLREIARH 112 (308)
T ss_pred CccHHHHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhC
Confidence 3334445555554 368999999999999999999876
No 142
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=91.53 E-value=0.2 Score=36.04 Aligned_cols=33 Identities=12% Similarity=0.173 Sum_probs=26.2
Q ss_pred HHHHHHHHHh---cCCCeEEEeccchHHHHHHHHhh
Q 043521 33 AQFLSMLLKL---INAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 33 g~~L~~l~~~---~~~k~iLEIGT~~GySal~lA~a 65 (71)
-.++...++. ..-.+|||||||.|..+.+||+.
T Consensus 45 l~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~ 80 (243)
T COG2227 45 LDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARL 80 (243)
T ss_pred hhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHC
Confidence 3455555555 67789999999999999999973
No 143
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=91.23 E-value=0.26 Score=36.70 Aligned_cols=23 Identities=13% Similarity=-0.090 Sum_probs=20.1
Q ss_pred CCCeEEEeccchHHHHHHHHhhC
Q 043521 44 NAKNTMEIGVYTGYSLLYTALAI 66 (71)
Q Consensus 44 ~~k~iLEIGT~~GySal~lA~al 66 (71)
+..+|||+|||+|..++.+|+..
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~ 314 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQA 314 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhC
Confidence 45789999999999999999753
No 144
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=91.20 E-value=0.63 Score=32.67 Aligned_cols=52 Identities=13% Similarity=0.043 Sum_probs=30.9
Q ss_pred hhhhhhhhcCcCCCCCHHHHHHHHHHH---HhcCCCeEEEeccchHHHHHHHHhh
Q 043521 14 FSQHIDGMRRNHMLSTPDEAQFLSMLL---KLINAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 14 ~~~~~~~~~~~~~~i~~~~g~~L~~l~---~~~~~k~iLEIGT~~GySal~lA~a 65 (71)
.++.....+++.-...-|+.+.-.++. ..-+.+++||+||+.|..|-.||..
T Consensus 10 ~~~la~~DPW~~~~~~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~r 64 (201)
T PF05401_consen 10 NRELANDDPWGFETSWYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPR 64 (201)
T ss_dssp HHHHTSSSGGGTTT-HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGG
T ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHh
Confidence 344444556665445555545444443 3344468999999999999999875
No 145
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=91.09 E-value=0.3 Score=36.41 Aligned_cols=31 Identities=23% Similarity=0.207 Sum_probs=24.5
Q ss_pred HHHHHHhcCCCeEEEeccchHHHHHHHHhhC
Q 043521 36 LSMLLKLINAKNTMEIGVYTGYSLLYTALAI 66 (71)
Q Consensus 36 L~~l~~~~~~k~iLEIGT~~GySal~lA~al 66 (71)
+.--+....-|+||||||+.||-+..|+..=
T Consensus 107 l~p~l~~L~gk~VLDIGC~nGY~~frM~~~G 137 (315)
T PF08003_consen 107 LLPHLPDLKGKRVLDIGCNNGYYSFRMLGRG 137 (315)
T ss_pred HHhhhCCcCCCEEEEecCCCcHHHHHHhhcC
Confidence 3333446778899999999999999998763
No 146
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=90.96 E-value=0.087 Score=38.29 Aligned_cols=19 Identities=21% Similarity=0.190 Sum_probs=16.0
Q ss_pred CCCeEEEeccchHHHHHHH
Q 043521 44 NAKNTMEIGVYTGYSLLYT 62 (71)
Q Consensus 44 ~~k~iLEIGT~~GySal~l 62 (71)
.+.-|||||||+|.|+-.+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL 68 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVL 68 (270)
T ss_pred CCcEEEEeccCCCcchhee
Confidence 4788999999999998544
No 147
>PHA03412 putative methyltransferase; Provisional
Probab=90.91 E-value=0.35 Score=34.70 Aligned_cols=42 Identities=5% Similarity=0.007 Sum_probs=29.2
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521 24 NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIP 67 (71)
Q Consensus 24 ~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~ 67 (71)
+..-.++...+.+. .......+|||+|||+|.-++.+++.++
T Consensus 31 GqFfTP~~iAr~~~--i~~~~~grVLDlG~GSG~Lalala~~~~ 72 (241)
T PHA03412 31 GAFFTPIGLARDFT--IDACTSGSVVDLCAGIGGLSFAMVHMMM 72 (241)
T ss_pred CccCCCHHHHHHHH--HhccCCCEEEEccChHHHHHHHHHHhcc
Confidence 44445555555432 2334567999999999999999988654
No 148
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=90.83 E-value=0.29 Score=36.79 Aligned_cols=40 Identities=13% Similarity=-0.031 Sum_probs=26.8
Q ss_pred CCCHHHHHHHH-HHHHh---cCCCeEEEeccchHHHHHHHHhhC
Q 043521 27 LSTPDEAQFLS-MLLKL---INAKNTMEIGVYTGYSLLYTALAI 66 (71)
Q Consensus 27 ~i~~~~g~~L~-~l~~~---~~~k~iLEIGT~~GySal~lA~al 66 (71)
++.+.+.+.+. .+... .+..+|||+|||+|..++.+|+..
T Consensus 276 q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~ 319 (443)
T PRK13168 276 QVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA 319 (443)
T ss_pred EcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC
Confidence 45555544333 33332 344699999999999999998753
No 149
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=90.80 E-value=0.47 Score=34.29 Aligned_cols=32 Identities=16% Similarity=0.077 Sum_probs=23.9
Q ss_pred HHHHHHh---cCCCeEEEeccchHHHHHHHHhhCC
Q 043521 36 LSMLLKL---INAKNTMEIGVYTGYSLLYTALAIP 67 (71)
Q Consensus 36 L~~l~~~---~~~k~iLEIGT~~GySal~lA~al~ 67 (71)
+...+.. .+..+|||||.|.|..|..|++...
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~ 53 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA 53 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC
Confidence 4444444 4446799999999999999988654
No 150
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=90.48 E-value=0.2 Score=35.06 Aligned_cols=41 Identities=22% Similarity=0.133 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhC
Q 043521 26 MLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAI 66 (71)
Q Consensus 26 ~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al 66 (71)
..+++...+-+-..+...+...|||||.|.|..|-.|++..
T Consensus 12 FL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~ 52 (262)
T PF00398_consen 12 FLVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG 52 (262)
T ss_dssp EEEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS
T ss_pred eeCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc
Confidence 34566666666666666678899999999999999998754
No 151
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=90.45 E-value=0.24 Score=29.56 Aligned_cols=21 Identities=19% Similarity=0.123 Sum_probs=18.5
Q ss_pred CeEEEeccchHHHHHHHHhhC
Q 043521 46 KNTMEIGVYTGYSLLYTALAI 66 (71)
Q Consensus 46 k~iLEIGT~~GySal~lA~al 66 (71)
.+|||+|||+|..++.+++..
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~ 22 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG 22 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC
T ss_pred CEEEEcCcchHHHHHHHHHHC
Confidence 479999999999999988764
No 152
>PHA01634 hypothetical protein
Probab=90.18 E-value=0.19 Score=33.91 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.1
Q ss_pred cCCCeEEEeccchHHHHHHHHhh
Q 043521 43 INAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 43 ~~~k~iLEIGT~~GySal~lA~a 65 (71)
.+-|+|++||.++|-|+++++..
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~ 49 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLR 49 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhc
Confidence 46689999999999999998753
No 153
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=89.76 E-value=0.38 Score=29.28 Aligned_cols=16 Identities=38% Similarity=0.652 Sum_probs=12.2
Q ss_pred hcCCCeEEEeccchHH
Q 043521 42 LINAKNTMEIGVYTGY 57 (71)
Q Consensus 42 ~~~~k~iLEIGT~~Gy 57 (71)
...||+||-||+.+||
T Consensus 36 ~~GpK~VLViGaStGy 51 (78)
T PF12242_consen 36 INGPKKVLVIGASTGY 51 (78)
T ss_dssp -TS-SEEEEES-SSHH
T ss_pred CCCCceEEEEecCCcc
Confidence 3788999999999998
No 154
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=89.60 E-value=0.84 Score=32.49 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=23.0
Q ss_pred HHHHHHHH---hcCCCeEEEeccchHHHHHHHHhhCC
Q 043521 34 QFLSMLLK---LINAKNTMEIGVYTGYSLLYTALAIP 67 (71)
Q Consensus 34 ~~L~~l~~---~~~~k~iLEIGT~~GySal~lA~al~ 67 (71)
+.|..+.+ ..+|++|||+|+|.|.......+..+
T Consensus 20 ~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~ 56 (274)
T PF09243_consen 20 RVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWP 56 (274)
T ss_pred HHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhc
Confidence 44444443 46899999999999976655544433
No 155
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=89.52 E-value=0.23 Score=33.84 Aligned_cols=31 Identities=19% Similarity=0.226 Sum_probs=24.3
Q ss_pred HHHHhcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521 38 MLLKLINAKNTMEIGVYTGYSLLYTALAIPD 68 (71)
Q Consensus 38 ~l~~~~~~k~iLEIGT~~GySal~lA~al~~ 68 (71)
...-..+.++|||||-|.|..+..+++.-|.
T Consensus 94 ~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~ 124 (241)
T PF00891_consen 94 EAFDFSGFKTVVDVGGGSGHFAIALARAYPN 124 (241)
T ss_dssp HHSTTTTSSEEEEET-TTSHHHHHHHHHSTT
T ss_pred ccccccCccEEEeccCcchHHHHHHHHHCCC
Confidence 3334467789999999999999999998773
No 156
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=89.19 E-value=1 Score=33.27 Aligned_cols=41 Identities=17% Similarity=0.014 Sum_probs=29.0
Q ss_pred CCCCCHHHHHHHHHHHHh----cCCCeEEEeccchHHHHHHHHhh
Q 043521 25 HMLSTPDEAQFLSMLLKL----INAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 25 ~~~i~~~~g~~L~~l~~~----~~~k~iLEIGT~~GySal~lA~a 65 (71)
..++.+...+-+...++. .+.++|||+|||+|.-++.+|..
T Consensus 210 F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~ 254 (374)
T TIGR02085 210 FFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP 254 (374)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc
Confidence 456666666555443322 45689999999999999999853
No 157
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=89.04 E-value=0.72 Score=33.27 Aligned_cols=37 Identities=19% Similarity=0.175 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHh
Q 043521 28 STPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTAL 64 (71)
Q Consensus 28 i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~ 64 (71)
+.+.....+..++...+.++|||+|||+|...+..+.
T Consensus 166 l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~ 202 (329)
T TIGR01177 166 MDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGL 202 (329)
T ss_pred CCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHH
Confidence 4566677777777666677999999999988776554
No 158
>PRK03612 spermidine synthase; Provisional
Probab=88.83 E-value=0.42 Score=36.98 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=20.6
Q ss_pred cCCCeEEEeccchHHHHHHHHhh
Q 043521 43 INAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 43 ~~~k~iLEIGT~~GySal~lA~a 65 (71)
.+|++||+||+|.|..+..+++.
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~ 318 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY 318 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC
Confidence 57899999999999999988864
No 159
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=88.82 E-value=0.39 Score=34.11 Aligned_cols=41 Identities=29% Similarity=0.218 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEeccchH--HHHHHHHhhCCC
Q 043521 28 STPDEAQFLSMLLKLINAKNTMEIGVYTG--YSLLYTALAIPD 68 (71)
Q Consensus 28 i~~~~g~~L~~l~~~~~~k~iLEIGT~~G--ySal~lA~al~~ 68 (71)
..|...+|+..|+.-.++|.|+|+.+..| .+++.||-+-..
T Consensus 25 ~ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~ 67 (218)
T PF07279_consen 25 KEPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQ 67 (218)
T ss_pred CCCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHh
Confidence 35678999999999999999999987754 467887766543
No 160
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=88.71 E-value=0.38 Score=34.55 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=19.7
Q ss_pred CCCeEEEeccchHHHHHHHHhhC
Q 043521 44 NAKNTMEIGVYTGYSLLYTALAI 66 (71)
Q Consensus 44 ~~k~iLEIGT~~GySal~lA~al 66 (71)
++++|||+|+|+|.-++.+|...
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~ 108 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL 108 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh
Confidence 78899999999999888887643
No 161
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=88.47 E-value=1.3 Score=32.66 Aligned_cols=42 Identities=10% Similarity=-0.039 Sum_probs=28.1
Q ss_pred CCCCCHHHHHHHH-HHHHhcC--CCeEEEeccchHHHHHHHHhhC
Q 043521 25 HMLSTPDEAQFLS-MLLKLIN--AKNTMEIGVYTGYSLLYTALAI 66 (71)
Q Consensus 25 ~~~i~~~~g~~L~-~l~~~~~--~k~iLEIGT~~GySal~lA~al 66 (71)
..++.+.+.+.|. ......+ +.+|||++||+|..++.+++..
T Consensus 175 F~Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~ 219 (353)
T TIGR02143 175 FTQPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNF 219 (353)
T ss_pred cccCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhC
Confidence 3445565554444 3334333 4579999999999999999864
No 162
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=88.01 E-value=0.44 Score=35.89 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.6
Q ss_pred hcCCCeEEEeccchHHHHHHHHhh
Q 043521 42 LINAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 42 ~~~~k~iLEIGT~~GySal~lA~a 65 (71)
+.+-|.||++|||+|..+++=|++
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akA 81 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKA 81 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHh
Confidence 678899999999999999988876
No 163
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=87.85 E-value=0.25 Score=36.34 Aligned_cols=20 Identities=15% Similarity=0.054 Sum_probs=17.8
Q ss_pred CeEEEeccchHHHHHHHHhh
Q 043521 46 KNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 46 k~iLEIGT~~GySal~lA~a 65 (71)
++|||+|||.|..+.-||+-
T Consensus 91 ~~ilDvGCGgGLLSepLArl 110 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARL 110 (282)
T ss_pred ceEEEeccCccccchhhHhh
Confidence 56999999999999999873
No 164
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=87.83 E-value=0.46 Score=34.86 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=15.5
Q ss_pred CCeEEEeccchHHHHHHH
Q 043521 45 AKNTMEIGVYTGYSLLYT 62 (71)
Q Consensus 45 ~k~iLEIGT~~GySal~l 62 (71)
-+++|++|||||.++..+
T Consensus 126 F~~~lDLGCGTGL~G~~l 143 (287)
T COG4976 126 FRRMLDLGCGTGLTGEAL 143 (287)
T ss_pred cceeeecccCcCcccHhH
Confidence 679999999999887664
No 165
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=87.30 E-value=1.5 Score=29.54 Aligned_cols=34 Identities=12% Similarity=0.067 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521 32 EAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 32 ~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a 65 (71)
...+...+....+-+++||++||+|.-++..++.
T Consensus 37 rea~f~~l~~~~~g~~vLDLfaGsG~lglea~sr 70 (189)
T TIGR00095 37 RELFFNILRPEIQGAHLLDVFAGSGLLGEEALSR 70 (189)
T ss_pred HHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhC
Confidence 3456666655567789999999999999988764
No 166
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=86.68 E-value=1.6 Score=32.19 Aligned_cols=43 Identities=9% Similarity=-0.087 Sum_probs=29.4
Q ss_pred CCCCCHHHHHHHHHHHHh-cC--CCeEEEeccchHHHHHHHHhhCC
Q 043521 25 HMLSTPDEAQFLSMLLKL-IN--AKNTMEIGVYTGYSLLYTALAIP 67 (71)
Q Consensus 25 ~~~i~~~~g~~L~~l~~~-~~--~k~iLEIGT~~GySal~lA~al~ 67 (71)
..++.+.+.+-|...+.. .+ ..++||++||+|..++.+++...
T Consensus 184 F~Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~~ 229 (362)
T PRK05031 184 FTQPNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNFR 229 (362)
T ss_pred eeccCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhCC
Confidence 455666665544444433 33 25799999999999999998643
No 167
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=86.56 E-value=0.76 Score=35.53 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=23.0
Q ss_pred CCCeEEEeccchHHHHHHHHhhCCCC
Q 043521 44 NAKNTMEIGVYTGYSLLYTALAIPDD 69 (71)
Q Consensus 44 ~~k~iLEIGT~~GySal~lA~al~~~ 69 (71)
+...+||||||.|-+.+.+|...|+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~ 372 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDA 372 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCC
Confidence 46788999999999999999998863
No 168
>PLN02823 spermine synthase
Probab=86.36 E-value=1 Score=33.33 Aligned_cols=23 Identities=17% Similarity=0.027 Sum_probs=20.4
Q ss_pred cCCCeEEEeccchHHHHHHHHhh
Q 043521 43 INAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 43 ~~~k~iLEIGT~~GySal~lA~a 65 (71)
.+|++||.||.|.|.++.++++.
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~ 124 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRH 124 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhC
Confidence 47899999999999999988774
No 169
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=85.24 E-value=1.8 Score=31.11 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=28.2
Q ss_pred HHHHHHHHHHh---cCCCeEEEeccchHHHHHHHHhhCCC
Q 043521 32 EAQFLSMLLKL---INAKNTMEIGVYTGYSLLYTALAIPD 68 (71)
Q Consensus 32 ~g~~L~~l~~~---~~~k~iLEIGT~~GySal~lA~al~~ 68 (71)
+..++..+-+. .+...++|.|+|-|..+-|++..++.
T Consensus 3 qsSli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~ 42 (259)
T PF05206_consen 3 QSSLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQE 42 (259)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhh
Confidence 34555655554 34458899999999999999999854
No 170
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=84.70 E-value=0.78 Score=33.76 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=24.0
Q ss_pred HhcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521 41 KLINAKNTMEIGVYTGYSLLYTALAIPD 68 (71)
Q Consensus 41 ~~~~~k~iLEIGT~~GySal~lA~al~~ 68 (71)
....++.+|||||..|.-|+.||+-..+
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~ 82 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGP 82 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhcc
Confidence 3467899999999999999999987654
No 171
>PHA03411 putative methyltransferase; Provisional
Probab=84.36 E-value=1.1 Score=32.75 Aligned_cols=25 Identities=4% Similarity=-0.082 Sum_probs=20.2
Q ss_pred hcCCCeEEEeccchHHHHHHHHhhC
Q 043521 42 LINAKNTMEIGVYTGYSLLYTALAI 66 (71)
Q Consensus 42 ~~~~k~iLEIGT~~GySal~lA~al 66 (71)
.....+|||+|||+|..++.+++..
T Consensus 62 ~~~~grVLDLGcGsGilsl~la~r~ 86 (279)
T PHA03411 62 AHCTGKVLDLCAGIGRLSFCMLHRC 86 (279)
T ss_pred cccCCeEEEcCCCCCHHHHHHHHhC
Confidence 3445799999999999998887754
No 172
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=83.63 E-value=2.1 Score=29.61 Aligned_cols=52 Identities=19% Similarity=0.303 Sum_probs=33.4
Q ss_pred Hhhhhhhh-hcCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521 13 YFSQHIDG-MRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 13 ~~~~~~~~-~~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a 65 (71)
|.+....+ ..+..-.+.|.--+++.. ....+..+||..|||.|+-.+|||+.
T Consensus 6 W~~~w~~~~~~w~~~~~~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~ 58 (218)
T PF05724_consen 6 WEERWQEGQTPWDQGEPNPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQ 58 (218)
T ss_dssp HHHHHHTT--TT--TTSTHHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHT
T ss_pred HHHHHhcCCCCCCCCCCCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHC
Confidence 44444443 344445566665666665 33455569999999999999999963
No 173
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=83.62 E-value=1.6 Score=32.62 Aligned_cols=37 Identities=19% Similarity=0.030 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhC
Q 043521 30 PDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAI 66 (71)
Q Consensus 30 ~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al 66 (71)
++.-+-+..-+...++..|||||-|||-.|..|.++-
T Consensus 44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~ 80 (315)
T KOG0820|consen 44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAG 80 (315)
T ss_pred HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhc
Confidence 4445555555666777899999999999999988753
No 174
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=83.09 E-value=0.37 Score=35.13 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=20.1
Q ss_pred cCCCeEEEeccchHHHHHHHHhhCCC
Q 043521 43 INAKNTMEIGVYTGYSLLYTALAIPD 68 (71)
Q Consensus 43 ~~~k~iLEIGT~~GySal~lA~al~~ 68 (71)
..|.+|||||||.|-+..=+.+..++
T Consensus 70 ~~~~~ilEvGCGvGNtvfPll~~~~n 95 (264)
T KOG2361|consen 70 KSAETILEVGCGVGNTVFPLLKTSPN 95 (264)
T ss_pred cChhhheeeccCCCcccchhhhcCCC
Confidence 34448999999999888777776654
No 175
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=81.63 E-value=2.2 Score=29.60 Aligned_cols=24 Identities=17% Similarity=0.033 Sum_probs=19.2
Q ss_pred CCeEEEeccchHHHHHHHHhhCCC
Q 043521 45 AKNTMEIGVYTGYSLLYTALAIPD 68 (71)
Q Consensus 45 ~k~iLEIGT~~GySal~lA~al~~ 68 (71)
+-+|+|+|.|.|.-+.-+.+.+.+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~ 42 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRK 42 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHH
Confidence 458999999999999998887764
No 176
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=81.22 E-value=1.8 Score=30.49 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=17.1
Q ss_pred CCCeEEEeccchHHH----HHHHHhhCC
Q 043521 44 NAKNTMEIGVYTGYS----LLYTALAIP 67 (71)
Q Consensus 44 ~~k~iLEIGT~~GyS----al~lA~al~ 67 (71)
++.+|+++||++|-. |+.+++..+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~ 126 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLP 126 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhh
Confidence 456999999999964 445555444
No 177
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=80.83 E-value=1.1 Score=30.41 Aligned_cols=63 Identities=21% Similarity=0.304 Sum_probs=34.5
Q ss_pred hhhHHHHHHhhhhhhhhcCcCCCCCHH---HHHHHHHHHHh---cCCC-eEEEeccchHHHHHHHHhhCCC
Q 043521 5 QLFFFYFVYFSQHIDGMRRNHMLSTPD---EAQFLSMLLKL---INAK-NTMEIGVYTGYSLLYTALAIPD 68 (71)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~~~---~g~~L~~l~~~---~~~k-~iLEIGT~~GySal~lA~al~~ 68 (71)
+.+--|.+-..+......+-... +.+ .-.++..+.-. .... +++|||||.|.=++-+|-..|+
T Consensus 3 ~~l~~y~~lL~~~N~~~NLt~~~-~~~~~~~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~ 72 (184)
T PF02527_consen 3 EKLEQYLELLLEWNKKINLTSIR-DPEEIWERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPD 72 (184)
T ss_dssp HHHHHHHHHHHHHHHCSSS-S---SHHHHHHHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TT
T ss_pred HHHHHHHHHHHHhCceeeeccCC-CHHHHHHHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCC
Confidence 34455555555555544443322 211 12334443332 2222 7999999999999999988775
No 178
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=79.53 E-value=2.4 Score=30.23 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=23.8
Q ss_pred HHHHHHHHH----hcCCCeEEEeccchHHHHHHHHh
Q 043521 33 AQFLSMLLK----LINAKNTMEIGVYTGYSLLYTAL 64 (71)
Q Consensus 33 g~~L~~l~~----~~~~k~iLEIGT~~GySal~lA~ 64 (71)
-.+|...+. ..+|.+||++|||.|.--..|++
T Consensus 52 v~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~ 87 (227)
T KOG1271|consen 52 VDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAK 87 (227)
T ss_pred HHHHHhhhhhhhhcccccceeeccCCchHHHHHHHH
Confidence 356666666 56677999999999987666664
No 179
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=78.41 E-value=2.6 Score=30.79 Aligned_cols=33 Identities=9% Similarity=0.093 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCC-eEEEeccchHHHHHHHHhh
Q 043521 33 AQFLSMLLKLINAK-NTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 33 g~~L~~l~~~~~~k-~iLEIGT~~GySal~lA~a 65 (71)
..++..++..+.-. .++|+|||+|-.++-+|+.
T Consensus 21 tdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~ 54 (261)
T KOG3010|consen 21 TDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEH 54 (261)
T ss_pred HHHHHHHHhhCCCcceEEEeccCCCcchHHHHHh
Confidence 67888888887777 7899999999777766654
No 180
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=77.97 E-value=2.7 Score=27.28 Aligned_cols=23 Identities=9% Similarity=-0.045 Sum_probs=19.3
Q ss_pred CCCeEEEeccchHHHHHHHHhhC
Q 043521 44 NAKNTMEIGVYTGYSLLYTALAI 66 (71)
Q Consensus 44 ~~k~iLEIGT~~GySal~lA~al 66 (71)
+..+|||+|++.|-.+-++++..
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~ 45 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRG 45 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTST
T ss_pred cccEEEEcCCcccceeeeeeecc
Confidence 45899999999999999988776
No 181
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=77.55 E-value=1.5 Score=30.80 Aligned_cols=24 Identities=38% Similarity=0.620 Sum_probs=20.5
Q ss_pred CCeEEEeccchHHHHHHHHhhCCC
Q 043521 45 AKNTMEIGVYTGYSLLYTALAIPD 68 (71)
Q Consensus 45 ~k~iLEIGT~~GySal~lA~al~~ 68 (71)
+++++|||||.|.=++=+|-..|+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~ 91 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPD 91 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccC
Confidence 689999999999999988865554
No 182
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=77.54 E-value=11 Score=25.60 Aligned_cols=38 Identities=21% Similarity=0.279 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeccchH-HHHHHHHhhCC
Q 043521 30 PDEAQFLSMLLKLINAKNTMEIGVYTG-YSLLYTALAIP 67 (71)
Q Consensus 30 ~~~g~~L~~l~~~~~~k~iLEIGT~~G-ySal~lA~al~ 67 (71)
.+.-+.+..++....++.++=||++.| |-|.++|+..+
T Consensus 43 ~~a~~~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~ 81 (187)
T PF05728_consen 43 EEAIAQLEQLIEELKPENVVLIGSSLGGFYATYLAERYG 81 (187)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhC
Confidence 334578888899998888999999987 78888887543
No 183
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=76.74 E-value=2 Score=34.24 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=18.5
Q ss_pred eEEEeccchHHHHHHHHhhCCC
Q 043521 47 NTMEIGVYTGYSLLYTALAIPD 68 (71)
Q Consensus 47 ~iLEIGT~~GySal~lA~al~~ 68 (71)
.||+||||||..++.-+++..+
T Consensus 69 ~vLdigtGTGLLSmMAvragaD 90 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGAD 90 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCC
Confidence 4699999999999988887643
No 184
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=75.35 E-value=8.7 Score=27.03 Aligned_cols=20 Identities=5% Similarity=-0.087 Sum_probs=18.6
Q ss_pred CCeEEEeccchHHHHHHHHh
Q 043521 45 AKNTMEIGVYTGYSLLYTAL 64 (71)
Q Consensus 45 ~k~iLEIGT~~GySal~lA~ 64 (71)
..+||..|||.|+-++|||+
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~ 63 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLS 63 (226)
T ss_pred CCeEEEeCCCChHHHHHHHh
Confidence 47999999999999999997
No 185
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=75.26 E-value=2.3 Score=29.92 Aligned_cols=37 Identities=22% Similarity=0.341 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHHh---cCCCeEEEeccchHHHHHHHHh
Q 043521 28 STPDEAQFLSMLLKL---INAKNTMEIGVYTGYSLLYTAL 64 (71)
Q Consensus 28 i~~~~g~~L~~l~~~---~~~k~iLEIGT~~GySal~lA~ 64 (71)
.++...+.+-..++. ..-+.|+|+|||||..++.-+.
T Consensus 26 Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~ 65 (198)
T COG2263 26 TPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAAL 65 (198)
T ss_pred CChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHh
Confidence 333344444444444 4456799999999998887653
No 186
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=74.96 E-value=4.6 Score=31.75 Aligned_cols=60 Identities=15% Similarity=0.185 Sum_probs=43.3
Q ss_pred hhhHHHHHHhhhhhhhhcCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCCC
Q 043521 5 QLFFFYFVYFSQHIDGMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDGK 71 (71)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g~ 71 (71)
.|++|++-|-.-+......+.-++.++..+ ++.....-|+-||.|.+-|++.-+ +.++||
T Consensus 10 ~l~af~l~~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~DvIIVGAGV~GsaLa~~--L~kdGR 69 (509)
T KOG1298|consen 10 TLLAFVLTWTVFYLTKRKKKATNVAETSVE-----ARNDGAADVIIVGAGVAGSALAYA--LAKDGR 69 (509)
T ss_pred HHHHHHhhheeeecccccccccccchhhhh-----hccCCcccEEEECCcchHHHHHHH--HhhCCc
Confidence 478899999888866666777777776544 556666669999998887776544 556664
No 187
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=73.90 E-value=8.6 Score=28.85 Aligned_cols=22 Identities=14% Similarity=0.083 Sum_probs=19.4
Q ss_pred CeEEEeccchHHHHHHHHhhCC
Q 043521 46 KNTMEIGVYTGYSLLYTALAIP 67 (71)
Q Consensus 46 k~iLEIGT~~GySal~lA~al~ 67 (71)
.+|||++||+|.-++.+|...+
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~ 80 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETG 80 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCC
Confidence 5899999999999999987654
No 188
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=73.27 E-value=5.7 Score=27.69 Aligned_cols=20 Identities=20% Similarity=0.302 Sum_probs=15.5
Q ss_pred CeEEEeccchHHHHHHHHhh
Q 043521 46 KNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 46 k~iLEIGT~~GySal~lA~a 65 (71)
.+|||+|||.|----++.+.
T Consensus 15 srVLDLGCGdG~LL~~L~~~ 34 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDE 34 (193)
T ss_pred CEEEecCCCchHHHHHHHHh
Confidence 58999999999866666553
No 189
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=70.59 E-value=7.5 Score=30.44 Aligned_cols=34 Identities=12% Similarity=0.272 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhC
Q 043521 33 AQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAI 66 (71)
Q Consensus 33 g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al 66 (71)
+++++.+..-.+.+.++++|.|.||.+-.|+-..
T Consensus 142 selvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y 175 (476)
T KOG2651|consen 142 SELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY 175 (476)
T ss_pred HHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc
Confidence 6778888888999999999999999998887543
No 190
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=70.17 E-value=3.3 Score=29.52 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=23.3
Q ss_pred HHHHHHHHH----hcCCCeEEEeccchHHHHHHHHhh
Q 043521 33 AQFLSMLLK----LINAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 33 g~~L~~l~~----~~~~k~iLEIGT~~GySal~lA~a 65 (71)
|+.+...+- ..+-|+|||.|++.|.-++.=|++
T Consensus 64 G~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~a 100 (218)
T COG3897 64 GQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARA 100 (218)
T ss_pred hHHHHHHHhcCccccccceeeecccccChHHHHHHHh
Confidence 444444443 356789999999999988876553
No 191
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=70.14 E-value=5.9 Score=30.68 Aligned_cols=47 Identities=9% Similarity=0.086 Sum_probs=33.8
Q ss_pred cCCCCCHHHHHHHHHHH--HhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521 24 NHMLSTPDEAQFLSMLL--KLINAKNTMEIGVYTGYSLLYTALAIPDDG 70 (71)
Q Consensus 24 ~~~~i~~~~g~~L~~l~--~~~~~k~iLEIGT~~GySal~lA~al~~~g 70 (71)
+...+-.....+...++ ...+..+|||+.++.|-=|..+|+.+++.|
T Consensus 91 G~~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g 139 (470)
T PRK11933 91 GLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQG 139 (470)
T ss_pred CcEEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCC
Confidence 44444444455555544 345667999999999999999999998765
No 192
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=66.59 E-value=5.2 Score=30.72 Aligned_cols=22 Identities=18% Similarity=0.224 Sum_probs=16.5
Q ss_pred CCeEEEeccchHHHHHHHHhhC
Q 043521 45 AKNTMEIGVYTGYSLLYTALAI 66 (71)
Q Consensus 45 ~k~iLEIGT~~GySal~lA~al 66 (71)
.+.|++||+|+|..+..-+++.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~ 208 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAG 208 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTT
T ss_pred ceEEEEeCCCccHHHHHHHHHH
Confidence 4679999999999887776654
No 193
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=66.32 E-value=7.7 Score=29.62 Aligned_cols=21 Identities=19% Similarity=0.082 Sum_probs=18.1
Q ss_pred CeEEEeccchHHHHHHHHhhC
Q 043521 46 KNTMEIGVYTGYSLLYTALAI 66 (71)
Q Consensus 46 k~iLEIGT~~GySal~lA~al 66 (71)
..++|||.+.|.-+.-|.+.+
T Consensus 79 ~~lvEiGaG~G~l~~DiL~~l 99 (370)
T COG1565 79 LKLVEIGAGRGTLASDILRTL 99 (370)
T ss_pred ceEEEeCCCcChHHHHHHHHH
Confidence 479999999999988887765
No 194
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=63.71 E-value=7.1 Score=27.37 Aligned_cols=28 Identities=14% Similarity=0.100 Sum_probs=23.9
Q ss_pred cCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521 43 INAKNTMEIGVYTGYSLLYTALAIPDDG 70 (71)
Q Consensus 43 ~~~k~iLEIGT~~GySal~lA~al~~~g 70 (71)
.+..+|+|+|++.|-++-..++.+++++
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~ 71 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGG 71 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCC
Confidence 3457999999999999999999888765
No 195
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=63.19 E-value=14 Score=27.09 Aligned_cols=28 Identities=7% Similarity=-0.143 Sum_probs=23.8
Q ss_pred CCCeEEEeccchHHHHHHHHhhCCCCCC
Q 043521 44 NAKNTMEIGVYTGYSLLYTALAIPDDGK 71 (71)
Q Consensus 44 ~~k~iLEIGT~~GySal~lA~al~~~g~ 71 (71)
+...+||.++|.|.-|..+++.++++|+
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~~~~g~ 46 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERLGPKGR 46 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhCCCCCE
Confidence 3458999999999999999999876653
No 196
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=63.19 E-value=7.2 Score=29.68 Aligned_cols=20 Identities=10% Similarity=0.183 Sum_probs=16.5
Q ss_pred CCeEEEeccchHHHHHHHHh
Q 043521 45 AKNTMEIGVYTGYSLLYTAL 64 (71)
Q Consensus 45 ~k~iLEIGT~~GySal~lA~ 64 (71)
+-+|+|+||++|..|+....
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs 83 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIID 83 (386)
T ss_pred ceeEEEecCCCCccHHHHHH
Confidence 55899999999998877643
No 197
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=61.87 E-value=11 Score=24.79 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=15.6
Q ss_pred HHHHHHHHhcCCCeEEEeccchH
Q 043521 34 QFLSMLLKLINAKNTMEIGVYTG 56 (71)
Q Consensus 34 ~~L~~l~~~~~~k~iLEIGT~~G 56 (71)
+|-...++..+..+|+|||-|.=
T Consensus 3 ~~a~~ia~~~~~~kiVEVGiG~~ 25 (127)
T PF03686_consen 3 DFAEYIARLNNYGKIVEVGIGFN 25 (127)
T ss_dssp HHHHHHHHHS-SSEEEEET-TT-
T ss_pred hHHHHHHHhCCCCcEEEECcCCC
Confidence 34556778889999999998753
No 198
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=60.80 E-value=13 Score=26.98 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=11.2
Q ss_pred cCCCeEEEeccchHH
Q 043521 43 INAKNTMEIGVYTGY 57 (71)
Q Consensus 43 ~~~k~iLEIGT~~Gy 57 (71)
+.--.+||||||+|.
T Consensus 75 ~~K~~vLEvgcGtG~ 89 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGA 89 (252)
T ss_pred cCccceEEecccCCC
Confidence 333467999999994
No 199
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=60.35 E-value=25 Score=24.66 Aligned_cols=54 Identities=7% Similarity=0.119 Sum_probs=35.2
Q ss_pred HHhhhhhh--hhcCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521 12 VYFSQHID--GMRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 12 ~~~~~~~~--~~~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a 65 (71)
.+.+++.. ....+..-.++...+++..++...+..+|+|-.||+|.--+...+.
T Consensus 12 ~~l~~~~~~~~k~~G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~ 67 (311)
T PF02384_consen 12 YFLKKFAKESRKKLGQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEY 67 (311)
T ss_dssp HHHHHHHHCTTTSCGGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHH
T ss_pred HHHHHHHHHhccccceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHh
Confidence 33444433 3444666677888899999997777789999999999877666553
No 200
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=59.42 E-value=13 Score=27.28 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=17.6
Q ss_pred HHHHhcCCC--eEEEeccchHHHHHHHHh
Q 043521 38 MLLKLINAK--NTMEIGVYTGYSLLYTAL 64 (71)
Q Consensus 38 ~l~~~~~~k--~iLEIGT~~GySal~lA~ 64 (71)
++.....++ +|.|+||+.|..|+....
T Consensus 8 ~~~~~~~~~~~~iaD~GcS~G~Nsl~~~~ 36 (334)
T PF03492_consen 8 LYNSSNNPKPFRIADLGCSSGPNSLLAVS 36 (334)
T ss_dssp HHHSTTTTTEEEEEEES--SSHHHHHHHH
T ss_pred HHhcCCCCCceEEEecCCCCCccHHHHHH
Confidence 344344444 789999999999988654
No 201
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=59.34 E-value=18 Score=26.23 Aligned_cols=57 Identities=23% Similarity=0.353 Sum_probs=35.7
Q ss_pred HhhhhhhhhcCc----CCCCCHHH---HHHHHHHHHhcCCC-eEEEeccchHHHHHHHHhhCCCC
Q 043521 13 YFSQHIDGMRRN----HMLSTPDE---AQFLSMLLKLINAK-NTMEIGVYTGYSLLYTALAIPDD 69 (71)
Q Consensus 13 ~~~~~~~~~~~~----~~~i~~~~---g~~L~~l~~~~~~k-~iLEIGT~~GySal~lA~al~~~ 69 (71)
++.||+...+.. ...++|+. ..++-...+..+++ -+.|||||.|-..+.++...|++
T Consensus 21 ~YRQRAHsNP~sDh~l~yPvsP~~mDWS~~yp~f~~~~~~kvefaDIGCGyGGLlv~Lsp~fPdt 85 (249)
T KOG3115|consen 21 YYRQRAHSNPLSDHTLEYPVSPQEMDWSKYYPDFRRALNKKVEFADIGCGYGGLLMKLAPKFPDT 85 (249)
T ss_pred HHHHHhhcCCCccCcccCCCChHhCcHHHhhhhhhhhccccceEEeeccCccchhhhccccCccc
Confidence 345555543332 13455654 45555555555544 56999999998888888877764
No 202
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=59.31 E-value=11 Score=27.78 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=12.9
Q ss_pred HHHHHHHHhcCC-----CeEEEeccchHHHHHH
Q 043521 34 QFLSMLLKLINA-----KNTMEIGVYTGYSLLY 61 (71)
Q Consensus 34 ~~L~~l~~~~~~-----k~iLEIGT~~GySal~ 61 (71)
.++..|+...++ -++||||||. |.++
T Consensus 87 ~~i~DlL~~~~~~~~~~v~glDIGTGA--scIY 117 (299)
T PF05971_consen 87 HWIADLLASSNPGIPEKVRGLDIGTGA--SCIY 117 (299)
T ss_dssp HHHHHHHT--TCGCS---EEEEES-TT--TTHH
T ss_pred HHHHHHhhccccccccceEeecCCccH--HHHH
Confidence 344455554443 3689999954 5444
No 203
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=57.84 E-value=13 Score=27.11 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=21.2
Q ss_pred cCCCeEEEeccchHHHHHHHHhhCC
Q 043521 43 INAKNTMEIGVYTGYSLLYTALAIP 67 (71)
Q Consensus 43 ~~~k~iLEIGT~~GySal~lA~al~ 67 (71)
.+..++||||+|-|--|..|+....
T Consensus 93 ~~~~~lLDlGAGdG~VT~~l~~~f~ 117 (265)
T PF05219_consen 93 WKDKSLLDLGAGDGEVTERLAPLFK 117 (265)
T ss_pred ccCCceEEecCCCcHHHHHHHhhcc
Confidence 3678899999999999999987544
No 204
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=57.35 E-value=6.4 Score=28.15 Aligned_cols=41 Identities=15% Similarity=0.206 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHHHHhc----CCCeEEEeccchHHHHHHHHhhC
Q 043521 26 MLSTPDEAQFLSMLLKLI----NAKNTMEIGVYTGYSLLYTALAI 66 (71)
Q Consensus 26 ~~i~~~~g~~L~~l~~~~----~~k~iLEIGT~~GySal~lA~al 66 (71)
-.++...-.-|+.+++.. -|-.|+|.|+.-|-|++.|+..+
T Consensus 52 tm~g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l 96 (248)
T PF05711_consen 52 TMIGRERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVL 96 (248)
T ss_dssp -SSHHHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHH
Confidence 357777777777766654 56689999999999998876544
No 205
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=57.07 E-value=14 Score=26.75 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=20.7
Q ss_pred cCCCeEEEeccchHHHHHHHHhhCC
Q 043521 43 INAKNTMEIGVYTGYSLLYTALAIP 67 (71)
Q Consensus 43 ~~~k~iLEIGT~~GySal~lA~al~ 67 (71)
.+||+||.||-|-|-.+-.+++..+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ 99 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLP 99 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCC
Confidence 3458999999999999888887654
No 206
>COG3007 Uncharacterized paraquat-inducible protein B [Function unknown]
Probab=57.06 E-value=5.7 Score=30.23 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=19.6
Q ss_pred hcCCCeEEEeccchHHH-HHHHHhhCCC
Q 043521 42 LINAKNTMEIGVYTGYS-LLYTALAIPD 68 (71)
Q Consensus 42 ~~~~k~iLEIGT~~GyS-al~lA~al~~ 68 (71)
.+.||+||-||+.+||- +.+++.+.++
T Consensus 38 ~ngPKkVLviGaSsGyGLa~RIsaaFG~ 65 (398)
T COG3007 38 KNGPKKVLVIGASSGYGLAARISAAFGP 65 (398)
T ss_pred cCCCceEEEEecCCcccHHHHHHHHhCC
Confidence 36899999999999973 4445555543
No 207
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=56.19 E-value=12 Score=24.69 Aligned_cols=21 Identities=10% Similarity=0.132 Sum_probs=17.0
Q ss_pred HHHHHHHhcCCCeEEEeccch
Q 043521 35 FLSMLLKLINAKNTMEIGVYT 55 (71)
Q Consensus 35 ~L~~l~~~~~~k~iLEIGT~~ 55 (71)
+-...++.+++.+|+|||-|-
T Consensus 4 ~a~~iAre~~~gkVvEVGiG~ 24 (129)
T COG1255 4 VAEYIARENARGKVVEVGIGF 24 (129)
T ss_pred HHHHHHHHhcCCcEEEEccch
Confidence 445678899999999999863
No 208
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=54.19 E-value=10 Score=27.94 Aligned_cols=25 Identities=8% Similarity=0.125 Sum_probs=15.5
Q ss_pred HHHHHHHHHhc----CCCeEEEeccchHH
Q 043521 33 AQFLSMLLKLI----NAKNTMEIGVYTGY 57 (71)
Q Consensus 33 g~~L~~l~~~~----~~k~iLEIGT~~Gy 57 (71)
..++...++.. +..+|||+|||-|-
T Consensus 47 s~LI~~~~~~~~~~~~~~~VLDl~CGkGG 75 (331)
T PF03291_consen 47 SVLIQKYAKKVKQNRPGLTVLDLCCGKGG 75 (331)
T ss_dssp HHHHHHHCHCCCCTTTT-EEEEET-TTTT
T ss_pred HHHHHHHHHhhhccCCCCeEEEecCCCch
Confidence 44555555533 66899999999774
No 209
>KOG1631 consensus Translocon-associated complex TRAP, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.86 E-value=12 Score=27.30 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=17.7
Q ss_pred HHHHHHHHhcCCCeEEEeccch
Q 043521 34 QFLSMLLKLINAKNTMEIGVYT 55 (71)
Q Consensus 34 ~~L~~l~~~~~~k~iLEIGT~~ 55 (71)
++|..+.+..++++++|.||.+
T Consensus 204 q~L~~~sKk~~~~~kVE~GTas 225 (261)
T KOG1631|consen 204 QFLSKLSKKTKKRRKVEVGTAS 225 (261)
T ss_pred HHHHHhhhcccccceEeecccC
Confidence 5566666778899999999986
No 210
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.78 E-value=32 Score=26.76 Aligned_cols=36 Identities=17% Similarity=0.141 Sum_probs=27.0
Q ss_pred HHHHHHHHHh---cCC-CeEEEeccchHHHHHHHHhhCCC
Q 043521 33 AQFLSMLLKL---INA-KNTMEIGVYTGYSLLYTALAIPD 68 (71)
Q Consensus 33 g~~L~~l~~~---~~~-k~iLEIGT~~GySal~lA~al~~ 68 (71)
..+|..+... .+| ..++|.|+|-|+.+-|++..++.
T Consensus 167 sSllg~lE~~~~l~~~~~~~vEFGAGrg~Ls~~vs~~l~~ 206 (420)
T KOG2811|consen 167 SSLLGHLEELGLLTAPSSCFVEFGAGRGELSRWVSDCLQI 206 (420)
T ss_pred HHHHhHHHhccccCCCcceEEEecCCchHHHHHHHHHhcc
Confidence 4555555543 233 48899999999999999998875
No 211
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=51.53 E-value=13 Score=29.43 Aligned_cols=31 Identities=10% Similarity=0.131 Sum_probs=22.6
Q ss_pred HHHHHHHHh----cCCCeEEEeccchHHHHHHHHh
Q 043521 34 QFLSMLLKL----INAKNTMEIGVYTGYSLLYTAL 64 (71)
Q Consensus 34 ~~L~~l~~~----~~~k~iLEIGT~~GySal~lA~ 64 (71)
+.+..++.. ..-|.+||||||+|.-+-+|.+
T Consensus 103 d~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~ 137 (506)
T PF03141_consen 103 DQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLE 137 (506)
T ss_pred HHHHHHhhccccCCceEEEEeccceeehhHHHHhh
Confidence 344445533 5567889999999998888765
No 212
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=51.08 E-value=15 Score=25.71 Aligned_cols=24 Identities=21% Similarity=-0.020 Sum_probs=19.4
Q ss_pred cCCCeEEEeccchHHHHHHHHhhC
Q 043521 43 INAKNTMEIGVYTGYSLLYTALAI 66 (71)
Q Consensus 43 ~~~k~iLEIGT~~GySal~lA~al 66 (71)
.+|++||-||-|.|.++-.+.+.-
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~ 98 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHP 98 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTST
T ss_pred CCcCceEEEcCCChhhhhhhhhcC
Confidence 379999999999999988887643
No 213
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=50.86 E-value=21 Score=27.43 Aligned_cols=40 Identities=13% Similarity=-0.012 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHhc-------CCCeEEEeccchHHHHHHHHhhCC
Q 043521 28 STPDEAQFLSMLLKLI-------NAKNTMEIGVYTGYSLLYTALAIP 67 (71)
Q Consensus 28 i~~~~g~~L~~l~~~~-------~~k~iLEIGT~~GySal~lA~al~ 67 (71)
.++...+++-.++... ...+|||.+||+|...+.+++.++
T Consensus 8 TP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~ 54 (524)
T TIGR02987 8 TPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNE 54 (524)
T ss_pred CcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHH
Confidence 3445555555544322 456899999999999888887664
No 214
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=48.87 E-value=22 Score=22.96 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=20.0
Q ss_pred HHHHHHHHHhc----CCCeEEEeccchHHHHHHH
Q 043521 33 AQFLSMLLKLI----NAKNTMEIGVYTGYSLLYT 62 (71)
Q Consensus 33 g~~L~~l~~~~----~~k~iLEIGT~~GySal~l 62 (71)
+++|..|-+.. ++...+|||||.|...--|
T Consensus 43 AAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL 76 (112)
T PF07757_consen 43 AAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYIL 76 (112)
T ss_pred HHHHHHHHhcccCCCCCCceEEccCCchHHHHHH
Confidence 45555555543 4558999999999765433
No 215
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=47.66 E-value=25 Score=25.94 Aligned_cols=40 Identities=20% Similarity=0.110 Sum_probs=26.6
Q ss_pred CHHHHHHHHH----HHHhcCCC-eEEEeccchHHHHHHHHhhCCC
Q 043521 29 TPDEAQFLSM----LLKLINAK-NTMEIGVYTGYSLLYTALAIPD 68 (71)
Q Consensus 29 ~~~~g~~L~~----l~~~~~~k-~iLEIGT~~GySal~lA~al~~ 68 (71)
.+.+-++|.. +++..++. .+||+|+|.|.=+-.+.+++.+
T Consensus 56 tr~E~~iL~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~ 100 (319)
T TIGR03439 56 TNDEIEILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALER 100 (319)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHh
Confidence 3444555544 34445555 7999999999887777777653
No 216
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=47.09 E-value=17 Score=27.60 Aligned_cols=23 Identities=9% Similarity=0.036 Sum_probs=19.3
Q ss_pred cCCCeEEEeccchHHHHHHHHhh
Q 043521 43 INAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 43 ~~~k~iLEIGT~~GySal~lA~a 65 (71)
.+-+++||||+++|-.|..+++.
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r 232 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR 232 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc
Confidence 45569999999999999888764
No 217
>COG3150 Predicted esterase [General function prediction only]
Probab=47.01 E-value=69 Score=22.48 Aligned_cols=41 Identities=15% Similarity=0.325 Sum_probs=31.2
Q ss_pred CCCCCHHH-HHHHHHHHHhcCCCeEEEeccchH-HHHHHHHhh
Q 043521 25 HMLSTPDE-AQFLSMLLKLINAKNTMEIGVYTG-YSLLYTALA 65 (71)
Q Consensus 25 ~~~i~~~~-g~~L~~l~~~~~~k~iLEIGT~~G-ySal~lA~a 65 (71)
.+...+.+ .+-+..++...+.++.+-+|++.| |.|-|++..
T Consensus 37 ~l~h~p~~a~~ele~~i~~~~~~~p~ivGssLGGY~At~l~~~ 79 (191)
T COG3150 37 HLPHDPQQALKELEKAVQELGDESPLIVGSSLGGYYATWLGFL 79 (191)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCceEEeecchHHHHHHHHHH
Confidence 34455554 477778888888888999999875 999998864
No 218
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=46.25 E-value=17 Score=28.36 Aligned_cols=36 Identities=17% Similarity=0.201 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521 29 TPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 29 ~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a 65 (71)
+..+..+|.+- ...+-|.|||+|+|.|..+..-|++
T Consensus 163 gTY~~Ail~N~-sDF~~kiVlDVGaGSGILS~FAaqA 198 (517)
T KOG1500|consen 163 GTYQRAILENH-SDFQDKIVLDVGAGSGILSFFAAQA 198 (517)
T ss_pred hHHHHHHHhcc-cccCCcEEEEecCCccHHHHHHHHh
Confidence 34444444443 2356788999999999998887765
No 219
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=46.14 E-value=18 Score=24.95 Aligned_cols=18 Identities=28% Similarity=0.468 Sum_probs=15.1
Q ss_pred EEEeccchHHHHHHHHhh
Q 043521 48 TMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 48 iLEIGT~~GySal~lA~a 65 (71)
|.||||-.||..+++.+.
T Consensus 1 vaDIGtDHgyLpi~L~~~ 18 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN 18 (205)
T ss_dssp EEEET-STTHHHHHHHHT
T ss_pred CceeccchhHHHHHHHhc
Confidence 579999999999999864
No 220
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=44.70 E-value=52 Score=17.79 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=14.5
Q ss_pred HHhcCCCe-EEEeccchHHHH
Q 043521 40 LKLINAKN-TMEIGVYTGYSL 59 (71)
Q Consensus 40 ~~~~~~k~-iLEIGT~~GySa 59 (71)
....+... ++|+|+++|..+
T Consensus 43 ~~~~~~~~~~ld~~~g~g~~~ 63 (257)
T COG0500 43 LRLLPGGLGVLDIGCGTGRLA 63 (257)
T ss_pred hhhccCCCeeEEecCCcCHHH
Confidence 33444444 999999999876
No 221
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=42.98 E-value=19 Score=26.15 Aligned_cols=32 Identities=19% Similarity=0.047 Sum_probs=23.6
Q ss_pred HHHHHHHHhcCCCeEEEeccchHHHHHHHHhh
Q 043521 34 QFLSMLLKLINAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 34 ~~L~~l~~~~~~k~iLEIGT~~GySal~lA~a 65 (71)
..+...--..+-+.+||||++||--|-.+.+.
T Consensus 69 ~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~ 100 (245)
T COG1189 69 KALEEFELDVKGKVVLDIGSSTGGFTDVLLQR 100 (245)
T ss_pred HHHHhcCcCCCCCEEEEecCCCccHHHHHHHc
Confidence 33444444567789999999999988887653
No 222
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=42.47 E-value=26 Score=25.12 Aligned_cols=26 Identities=12% Similarity=0.199 Sum_probs=20.2
Q ss_pred CCeEEEeccchHHHHHHHHhhCCCCC
Q 043521 45 AKNTMEIGVYTGYSLLYTALAIPDDG 70 (71)
Q Consensus 45 ~k~iLEIGT~~GySal~lA~al~~~g 70 (71)
-.+|||+|++.|.++---.+...|+|
T Consensus 70 ~~~VlD~G~APGsWsQVavqr~~p~g 95 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQRVNPNG 95 (232)
T ss_pred CCEEEEccCCCChHHHHHHHhhCCCc
Confidence 45899999999988877666665554
No 223
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=41.38 E-value=16 Score=27.67 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=21.9
Q ss_pred hcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521 42 LINAKNTMEIGVYTGYSLLYTALAIPDDG 70 (71)
Q Consensus 42 ~~~~k~iLEIGT~~GySal~lA~al~~~g 70 (71)
..+-|+||-||+ |.||..++..+-+.|
T Consensus 172 ~~~GKrV~VIG~--GaSA~di~~~l~~~g 198 (443)
T COG2072 172 DLRGKRVLVIGA--GASAVDIAPELAEVG 198 (443)
T ss_pred ccCCCeEEEECC--CccHHHHHHHHHhcC
Confidence 456799999999 789999988776653
No 224
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=41.11 E-value=13 Score=27.46 Aligned_cols=31 Identities=16% Similarity=0.335 Sum_probs=20.8
Q ss_pred HHHHHHHHHHh------cCCCeEEEeccchHHHHHHH
Q 043521 32 EAQFLSMLLKL------INAKNTMEIGVYTGYSLLYT 62 (71)
Q Consensus 32 ~g~~L~~l~~~------~~~k~iLEIGT~~GySal~l 62 (71)
...++..+..+ ..-|+|||+||+.|.=.+..
T Consensus 98 S~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~ 134 (282)
T KOG2920|consen 98 SVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFA 134 (282)
T ss_pred HHHHHHHHHHHhhhheEecCceeEecCCcccccchhh
Confidence 34555555533 46689999999998755543
No 225
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=40.89 E-value=39 Score=23.27 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=15.0
Q ss_pred HhcCCCeEEEeccchHHHHHHHHh
Q 043521 41 KLINAKNTMEIGVYTGYSLLYTAL 64 (71)
Q Consensus 41 ~~~~~k~iLEIGT~~GySal~lA~ 64 (71)
...+-...+|||+|.|--.++.|.
T Consensus 39 ~l~~~dvF~DlGSG~G~~v~~aal 62 (205)
T PF08123_consen 39 NLTPDDVFYDLGSGVGNVVFQAAL 62 (205)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHH
T ss_pred CCCCCCEEEECCCCCCHHHHHHHH
Confidence 344455779999999987666553
No 226
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.49 E-value=3.8 Score=28.75 Aligned_cols=28 Identities=32% Similarity=0.419 Sum_probs=22.4
Q ss_pred hcCCCeEEEeccc-hHHHHHHHHhhCCCC
Q 043521 42 LINAKNTMEIGVY-TGYSLLYTALAIPDD 69 (71)
Q Consensus 42 ~~~~k~iLEIGT~-~GySal~lA~al~~~ 69 (71)
..+.++|||+|.| +|.+++.+|...|+.
T Consensus 27 ~~rg~~ilelgggft~laglmia~~a~~~ 55 (201)
T KOG3201|consen 27 KIRGRRILELGGGFTGLAGLMIACKAPDS 55 (201)
T ss_pred HHhHHHHHHhcCchhhhhhhheeeecCCc
Confidence 3566899999874 789999999877764
No 227
>PRK04940 hypothetical protein; Provisional
Probab=39.03 E-value=71 Score=21.87 Aligned_cols=39 Identities=18% Similarity=0.167 Sum_probs=24.8
Q ss_pred CCHHH-HHHHHHHHHh-cC---CCeEEEeccchH-HHHHHHHhhC
Q 043521 28 STPDE-AQFLSMLLKL-IN---AKNTMEIGVYTG-YSLLYTALAI 66 (71)
Q Consensus 28 i~~~~-g~~L~~l~~~-~~---~k~iLEIGT~~G-ySal~lA~al 66 (71)
..|.+ -+.+..++.. .+ .+.++-||++.| |.|.|||...
T Consensus 37 ~~P~~a~~~l~~~i~~~~~~~~~~~~~liGSSLGGyyA~~La~~~ 81 (180)
T PRK04940 37 LHPKHDMQHLLKEVDKMLQLSDDERPLICGVGLGGYWAERIGFLC 81 (180)
T ss_pred CCHHHHHHHHHHHHHHhhhccCCCCcEEEEeChHHHHHHHHHHHH
Confidence 55554 3444444442 11 246888999886 9999998754
No 228
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=37.53 E-value=67 Score=23.89 Aligned_cols=36 Identities=17% Similarity=0.326 Sum_probs=25.3
Q ss_pred HHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521 33 AQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG 70 (71)
Q Consensus 33 g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g 70 (71)
..-+...+....|++|+-||. |+.++-+|..+.+.|
T Consensus 136 ~~~l~~~l~~~~~~~vvViGg--G~ig~E~A~~l~~~g 171 (438)
T PRK13512 136 TDAIDQFIKANQVDKALVVGA--GYISLEVLENLYERG 171 (438)
T ss_pred HHHHHHHHhhcCCCEEEEECC--CHHHHHHHHHHHhCC
Confidence 344444444567899999995 789999988776543
No 229
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=36.03 E-value=43 Score=21.37 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=19.3
Q ss_pred hcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521 42 LINAKNTMEIGVYTGYSLLYTALAIPDDG 70 (71)
Q Consensus 42 ~~~~k~iLEIGT~~GySal~lA~al~~~g 70 (71)
..+.++|+-||. |-||..++..+-+.|
T Consensus 164 ~~~~k~V~VVG~--G~SA~d~a~~l~~~g 190 (203)
T PF13738_consen 164 DFKGKRVVVVGG--GNSAVDIAYALAKAG 190 (203)
T ss_dssp GCTTSEEEEE----SHHHHHHHHHHTTTC
T ss_pred hcCCCcEEEEcC--hHHHHHHHHHHHhhC
Confidence 345699999999 569999888877655
No 230
>PF01644 Chitin_synth_1: Chitin synthase; InterPro: IPR004834 This region is found commonly in chitin synthases classes I, II and III 2.4.1.16 from EC. Chitin a linear homopolymer of GlcNAc residues, it is an important component of the cell wall of fungi and is synthesised on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases []. ; GO: 0004100 chitin synthase activity, 0006031 chitin biosynthetic process
Probab=34.85 E-value=43 Score=22.76 Aligned_cols=29 Identities=14% Similarity=0.416 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcCCCeE--EEeccchHHHHHH
Q 043521 33 AQFLSMLLKLINAKNT--MEIGVYTGYSLLY 61 (71)
Q Consensus 33 g~~L~~l~~~~~~k~i--LEIGT~~GySal~ 61 (71)
.=|+..+++..+|+.+ ||+||=.|-++++
T Consensus 127 rWfFnaf~~~l~P~vcvllDvGT~P~~~siy 157 (163)
T PF01644_consen 127 RWFFNAFCRQLQPNVCVLLDVGTKPGKDSIY 157 (163)
T ss_pred hHHHHHHHhhcCCcEEEEEecCCCcCchHHH
Confidence 4578889999999976 8999999988886
No 231
>PF07780 Spb1_C: Spb1 C-terminal domain; InterPro: IPR012920 This presumed domain is found at the C terminus of a family of FtsJ-like methyltransferases. Members of this family are involved in 60S ribosomal biogenesis, for example P25582 from SWISSPROT []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005634 nucleus
Probab=34.06 E-value=77 Score=22.48 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=32.1
Q ss_pred HHhhhhhhhhcCcCCCCCHHHHHHHHHHHHhcCCCeE
Q 043521 12 VYFSQHIDGMRRNHMLSTPDEAQFLSMLLKLINAKNT 48 (71)
Q Consensus 12 ~~~~~~~~~~~~~~~~i~~~~g~~L~~l~~~~~~k~i 48 (71)
+||-+=+..|..+...|+.+..+-+..-.+..+++-|
T Consensus 77 ~WF~eDE~kH~k~~~Pvtke~v~~~k~k~~einaRPI 113 (215)
T PF07780_consen 77 DWFVEDEKKHNKPQLPVTKEEVAEYKEKLREINARPI 113 (215)
T ss_pred hhHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHcCCch
Confidence 7999999999999999999999888888888777643
No 232
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=33.65 E-value=25 Score=25.46 Aligned_cols=18 Identities=17% Similarity=0.122 Sum_probs=12.2
Q ss_pred CCCeEEEeccchHHHHHH
Q 043521 44 NAKNTMEIGVYTGYSLLY 61 (71)
Q Consensus 44 ~~k~iLEIGT~~GySal~ 61 (71)
.|.+|++||||.=--++-
T Consensus 105 ~p~sVlDigCGlNPlalp 122 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALP 122 (251)
T ss_dssp --SEEEEET-TTCHHHHH
T ss_pred CCchhhhhhccCCceehh
Confidence 489999999988766653
No 233
>PRK00536 speE spermidine synthase; Provisional
Probab=31.14 E-value=57 Score=23.45 Aligned_cols=24 Identities=4% Similarity=-0.236 Sum_probs=20.5
Q ss_pred hcCCCeEEEeccchHHHHHHHHhh
Q 043521 42 LINAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 42 ~~~~k~iLEIGT~~GySal~lA~a 65 (71)
--+||+||-||.|-|-.+--+.+.
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh 93 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKY 93 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCc
Confidence 467999999999999988877765
No 234
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=30.94 E-value=89 Score=22.28 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHhc--CCCeEEEeccchHHHHHHHHh
Q 043521 29 TPDEAQFLSMLLKLI--NAKNTMEIGVYTGYSLLYTAL 64 (71)
Q Consensus 29 ~~~~g~~L~~l~~~~--~~k~iLEIGT~~GySal~lA~ 64 (71)
-+.|-+++..+.+.. +..-++|.+||+|=+...+..
T Consensus 10 r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~ 47 (289)
T smart00489 10 YPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCL 47 (289)
T ss_pred CHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHH
Confidence 566777776666553 345779999999966555443
No 235
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=30.94 E-value=89 Score=22.28 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHhc--CCCeEEEeccchHHHHHHHHh
Q 043521 29 TPDEAQFLSMLLKLI--NAKNTMEIGVYTGYSLLYTAL 64 (71)
Q Consensus 29 ~~~~g~~L~~l~~~~--~~k~iLEIGT~~GySal~lA~ 64 (71)
-+.|-+++..+.+.. +..-++|.+||+|=+...+..
T Consensus 10 r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~ 47 (289)
T smart00488 10 YPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCL 47 (289)
T ss_pred CHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHH
Confidence 566777776666553 345779999999966555443
No 236
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=30.52 E-value=21 Score=27.99 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=19.7
Q ss_pred cCCCeEEEeccchHHHHHHHHhhCCC
Q 043521 43 INAKNTMEIGVYTGYSLLYTALAIPD 68 (71)
Q Consensus 43 ~~~k~iLEIGT~~GySal~lA~al~~ 68 (71)
..|++||++|.|.|.-.++.-...|+
T Consensus 112 fapqsiLDvG~GPgtgl~A~n~i~Pd 137 (484)
T COG5459 112 FAPQSILDVGAGPGTGLWALNDIWPD 137 (484)
T ss_pred cCcchhhccCCCCchhhhhhcccCCC
Confidence 67999999999998766665555543
No 237
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=30.44 E-value=75 Score=22.66 Aligned_cols=50 Identities=10% Similarity=0.181 Sum_probs=39.0
Q ss_pred hcCcCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521 21 MRRNHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDDG 70 (71)
Q Consensus 21 ~~~~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~g 70 (71)
.+.+...+-++...+...++...+-.+|||.-++.|-=|..+|+.+++.|
T Consensus 62 ~~~G~~~vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g 111 (283)
T PF01189_consen 62 FKNGLFYVQDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKG 111 (283)
T ss_dssp HHTTSEEEHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTS
T ss_pred hhCCcEEecccccccccccccccccccccccccCCCCceeeeeecccchh
Confidence 34455566666666767777777778999999999999999999998665
No 238
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=30.43 E-value=1.1e+02 Score=22.37 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=23.2
Q ss_pred HHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCC
Q 043521 33 AQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDD 69 (71)
Q Consensus 33 g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~ 69 (71)
..-+...+....+++|+-||. |++++.+|..+.+.
T Consensus 125 ~~~~~~~l~~~~~~~vvViGg--G~~g~e~A~~l~~~ 159 (427)
T TIGR03385 125 TDAIKQYIDKNKVENVVIIGG--GYIGIEMAEALRER 159 (427)
T ss_pred HHHHHHHHhhcCCCeEEEECC--CHHHHHHHHHHHhC
Confidence 333444444567899999986 57888887766543
No 239
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=29.61 E-value=80 Score=20.40 Aligned_cols=28 Identities=11% Similarity=0.008 Sum_probs=20.8
Q ss_pred HhcCCCeEEEeccc-hHHHHHHHHhhCCC
Q 043521 41 KLINAKNTMEIGVY-TGYSLLYTALAIPD 68 (71)
Q Consensus 41 ~~~~~k~iLEIGT~-~GySal~lA~al~~ 68 (71)
...+|.+|+-+|.| .|..|..++.+++-
T Consensus 16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa 44 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGA 44 (168)
T ss_dssp TEE-T-EEEEESTSHHHHHHHHHHHHTT-
T ss_pred CCCCCeEEEEECCCHHHHHHHHHHhHCCC
Confidence 45789999999998 47888889888863
No 240
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=29.16 E-value=93 Score=22.87 Aligned_cols=45 Identities=11% Similarity=0.045 Sum_probs=29.4
Q ss_pred CcCCCCCHHHHHHHHHHHHh-cC--CCeEEEeccchHHHHHHHHhhCC
Q 043521 23 RNHMLSTPDEAQFLSMLLKL-IN--AKNTMEIGVYTGYSLLYTALAIP 67 (71)
Q Consensus 23 ~~~~~i~~~~g~~L~~l~~~-~~--~k~iLEIGT~~GySal~lA~al~ 67 (71)
....++.+.+.+-|..++.. .+ +..+||+=||+|--++.+|+...
T Consensus 172 ~sFfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~ 219 (352)
T PF05958_consen 172 GSFFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAK 219 (352)
T ss_dssp TS---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSS
T ss_pred CcCccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCC
Confidence 35667788877655555543 33 23799999999999999997643
No 241
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=29.07 E-value=1.3e+02 Score=20.71 Aligned_cols=32 Identities=16% Similarity=0.125 Sum_probs=21.4
Q ss_pred HHHHHHhcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521 36 LSMLLKLINAKNTMEIGVYTGYSLLYTALAIPD 68 (71)
Q Consensus 36 L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~ 68 (71)
+..+....+.+.++|+|.+.-.+.+ +-+.+++
T Consensus 254 i~~l~~~~g~~~~ie~Gp~~~l~~~-~~~~~~~ 285 (298)
T smart00827 254 VRALLAEQGVTVFLEVGPHPVLTGP-IKQTLPA 285 (298)
T ss_pred HHHHHHcCCCcEEEEeCCcHHHHHH-HHHHHhc
Confidence 3344444578899999999888776 3344443
No 242
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=28.97 E-value=81 Score=21.87 Aligned_cols=37 Identities=16% Similarity=0.113 Sum_probs=24.3
Q ss_pred CCCCCHHHHHHHHHHHHh---cCCCeEEEeccchHHHHHH
Q 043521 25 HMLSTPDEAQFLSMLLKL---INAKNTMEIGVYTGYSLLY 61 (71)
Q Consensus 25 ~~~i~~~~g~~L~~l~~~---~~~k~iLEIGT~~GySal~ 61 (71)
.|..+..-...+++.-.. ..-++++++||++|..++.
T Consensus 26 Y~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a 65 (185)
T KOG3420|consen 26 YPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIA 65 (185)
T ss_pred CCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHH
Confidence 344444444555555444 4578999999999987744
No 243
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=28.33 E-value=27 Score=25.58 Aligned_cols=41 Identities=20% Similarity=0.253 Sum_probs=27.1
Q ss_pred cCcCC-CCCHHHHHHHHHHHHh-----cCCCeEEEeccchHHHHHHHHh
Q 043521 22 RRNHM-LSTPDEAQFLSMLLKL-----INAKNTMEIGVYTGYSLLYTAL 64 (71)
Q Consensus 22 ~~~~~-~i~~~~g~~L~~l~~~-----~~~k~iLEIGT~~GySal~lA~ 64 (71)
..+.| ..+++| |-+.|+.. ..|.++||+|.|-|-.+..|+.
T Consensus 86 grGsMFifSe~Q--F~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p 132 (288)
T KOG3987|consen 86 GRGSMFIFSEEQ--FRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAP 132 (288)
T ss_pred ccCceEEecHHH--HHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcc
Confidence 33443 455553 44444443 4568999999999988888764
No 244
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=28.27 E-value=44 Score=22.47 Aligned_cols=21 Identities=10% Similarity=-0.013 Sum_probs=17.7
Q ss_pred CeEEEeccchHHHHHHHHhhC
Q 043521 46 KNTMEIGVYTGYSLLYTALAI 66 (71)
Q Consensus 46 k~iLEIGT~~GySal~lA~al 66 (71)
+.|+|.-||.|-.++.+|+..
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~ 21 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF 21 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT
T ss_pred CEEEEeccCcCHHHHHHHHhC
Confidence 468999999999999999864
No 245
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=28.26 E-value=1.2e+02 Score=22.76 Aligned_cols=43 Identities=16% Similarity=0.058 Sum_probs=28.2
Q ss_pred cCCCCCHHHHHH-HHHHHHhcCC---CeEEEeccchHHHHHHHHhhC
Q 043521 24 NHMLSTPDEAQF-LSMLLKLINA---KNTMEIGVYTGYSLLYTALAI 66 (71)
Q Consensus 24 ~~~~i~~~~g~~-L~~l~~~~~~---k~iLEIGT~~GySal~lA~al 66 (71)
+.|...++-.-+ +..+.+..+. -+|||.-+|+|.-++..+...
T Consensus 20 P~~~~nRDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~ 66 (374)
T TIGR00308 20 PRMQFNRDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEI 66 (374)
T ss_pred chhhccccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhC
Confidence 445555554332 3333333444 389999999999999999864
No 246
>KOG2597 consensus Predicted aminopeptidase of the M17 family [General function prediction only]
Probab=27.26 E-value=58 Score=26.03 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=17.5
Q ss_pred cCCCeEEEeccchHHHHHHHH
Q 043521 43 INAKNTMEIGVYTGYSLLYTA 63 (71)
Q Consensus 43 ~~~k~iLEIGT~~GySal~lA 63 (71)
.+|+.|+|++|.+|.--+.+-
T Consensus 375 ~~~~~I~d~aTLTGa~~ialG 395 (513)
T KOG2597|consen 375 LKPKLIVDIATLTGAMRIALG 395 (513)
T ss_pred cCCCEEEEeccchhhhHhhcC
Confidence 789999999999998665543
No 247
>PRK06847 hypothetical protein; Provisional
Probab=27.04 E-value=48 Score=23.42 Aligned_cols=18 Identities=17% Similarity=0.015 Sum_probs=11.4
Q ss_pred CCCeEEEeccchHHHHHH
Q 043521 44 NAKNTMEIGVYTGYSLLY 61 (71)
Q Consensus 44 ~~k~iLEIGT~~GySal~ 61 (71)
++++|+-||.|.+-.++.
T Consensus 3 ~~~~V~IVGaG~aGl~~A 20 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAA 20 (375)
T ss_pred CcceEEEECCCHHHHHHH
Confidence 467788888765543333
No 248
>PRK00913 multifunctional aminopeptidase A; Provisional
Probab=26.70 E-value=70 Score=25.12 Aligned_cols=23 Identities=9% Similarity=0.250 Sum_probs=19.1
Q ss_pred HhcCCCeEEEeccchHHHHHHHH
Q 043521 41 KLINAKNTMEIGVYTGYSLLYTA 63 (71)
Q Consensus 41 ~~~~~k~iLEIGT~~GySal~lA 63 (71)
+..+|+.|+||.|.||.--..|-
T Consensus 351 ~~~~p~~iiDiATLTGa~~vALG 373 (483)
T PRK00913 351 ERFKPDAIIDVATLTGACVVALG 373 (483)
T ss_pred hhcCCCEEEEecchHHHHHHHcC
Confidence 56899999999999998766553
No 249
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=25.68 E-value=1.2e+02 Score=21.75 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=21.4
Q ss_pred HHHHHHhcCCCeEEEeccchHHHHHHHHhhCC
Q 043521 36 LSMLLKLINAKNTMEIGVYTGYSLLYTALAIP 67 (71)
Q Consensus 36 L~~l~~~~~~k~iLEIGT~~GySal~lA~al~ 67 (71)
+..+++...+ +.||||-.+|...++.+.-+
T Consensus 10 va~~V~~~~~--iaDIGsDHAYLp~~Lv~~~~ 39 (226)
T COG2384 10 VANLVKQGAR--IADIGSDHAYLPIYLVKNNP 39 (226)
T ss_pred HHHHHHcCCc--eeeccCchhHhHHHHHhcCC
Confidence 3444444333 99999999999999887544
No 250
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=25.10 E-value=37 Score=23.04 Aligned_cols=11 Identities=36% Similarity=0.444 Sum_probs=8.0
Q ss_pred CCCeEEEeccc
Q 043521 44 NAKNTMEIGVY 54 (71)
Q Consensus 44 ~~k~iLEIGT~ 54 (71)
+-+.++|||||
T Consensus 82 ~~k~lVDIGTG 92 (153)
T KOG3048|consen 82 NSKFLVDIGTG 92 (153)
T ss_pred ccceeEeccCc
Confidence 34566999996
No 251
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=24.37 E-value=71 Score=24.61 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=20.0
Q ss_pred cCCCeEEEeccchHHHHHH-HHhhC
Q 043521 43 INAKNTMEIGVYTGYSLLY-TALAI 66 (71)
Q Consensus 43 ~~~k~iLEIGT~~GySal~-lA~al 66 (71)
.++|++|-+|.+.|++.-| +|+++
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al 63 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAF 63 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHH
Confidence 5668999999999997775 77777
No 252
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=23.44 E-value=32 Score=24.97 Aligned_cols=23 Identities=13% Similarity=-0.120 Sum_probs=19.2
Q ss_pred cCCCeEEEeccchHHHHHHHHhh
Q 043521 43 INAKNTMEIGVYTGYSLLYTALA 65 (71)
Q Consensus 43 ~~~k~iLEIGT~~GySal~lA~a 65 (71)
.+..+||--|+|.|-.+.-+|..
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~ 77 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKL 77 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhc
Confidence 34579999999999999888864
No 253
>PRK11071 esterase YqiA; Provisional
Probab=22.61 E-value=2.3e+02 Score=18.52 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeccchH-HHHHHHHhhCC
Q 043521 30 PDEAQFLSMLLKLINAKNTMEIGVYTG-YSLLYTALAIP 67 (71)
Q Consensus 30 ~~~g~~L~~l~~~~~~k~iLEIGT~~G-ySal~lA~al~ 67 (71)
.+..+.+..++...+.+++.-+|.+.| +.++.+|...|
T Consensus 45 ~~~~~~l~~l~~~~~~~~~~lvG~S~Gg~~a~~~a~~~~ 83 (190)
T PRK11071 45 ADAAELLESLVLEHGGDPLGLVGSSLGGYYATWLSQCFM 83 (190)
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEECHHHHHHHHHHHHcC
Confidence 456788888888888889999999887 66777776655
No 254
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.48 E-value=1.1e+02 Score=21.42 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=26.8
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHh
Q 043521 24 NHMLSTPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTAL 64 (71)
Q Consensus 24 ~~~~i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~ 64 (71)
+....+.+|-+-.-.+++.++.-+.+|+|+|-|-.-+.-|+
T Consensus 52 PYVpAtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar 92 (199)
T KOG4058|consen 52 PYVPATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAAR 92 (199)
T ss_pred cccCccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhh
Confidence 33444555554445566667778999999999966555443
No 255
>PRK06849 hypothetical protein; Provisional
Probab=21.65 E-value=74 Score=23.15 Aligned_cols=27 Identities=19% Similarity=0.147 Sum_probs=18.3
Q ss_pred cCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521 43 INAKNTMEIGVYTGYSLLYTALAIPDDG 70 (71)
Q Consensus 43 ~~~k~iLEIGT~~GySal~lA~al~~~g 70 (71)
+.+++||-+|...+ .++.+++.+.+.|
T Consensus 2 ~~~~~VLI~G~~~~-~~l~iar~l~~~G 28 (389)
T PRK06849 2 NTKKTVLITGARAP-AALELARLFHNAG 28 (389)
T ss_pred CCCCEEEEeCCCcH-HHHHHHHHHHHCC
Confidence 46788999887654 4666666665544
No 256
>PRK07208 hypothetical protein; Provisional
Probab=21.61 E-value=63 Score=23.93 Aligned_cols=23 Identities=26% Similarity=0.171 Sum_probs=15.3
Q ss_pred cCCCeEEEeccchHHHHHHHHhhCC
Q 043521 43 INAKNTMEIGVYTGYSLLYTALAIP 67 (71)
Q Consensus 43 ~~~k~iLEIGT~~GySal~lA~al~ 67 (71)
.+.++|+-||.| .|++..|..|.
T Consensus 2 ~~~~~vvIiGaG--isGL~aA~~L~ 24 (479)
T PRK07208 2 TNKKSVVIIGAG--PAGLTAAYELL 24 (479)
T ss_pred CCCCcEEEECcC--HHHHHHHHHHH
Confidence 567789999995 46555554443
No 257
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=21.52 E-value=82 Score=22.94 Aligned_cols=27 Identities=11% Similarity=0.228 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHh----cCCCeEEEeccchH
Q 043521 30 PDEAQFLSMLLKL----INAKNTMEIGVYTG 56 (71)
Q Consensus 30 ~~~g~~L~~l~~~----~~~k~iLEIGT~~G 56 (71)
.+...||..-++- .+-+..|+||||.=
T Consensus 50 r~nR~Fl~RaVr~la~~~GIrQFLDlGsGlP 80 (267)
T PF04672_consen 50 RANRAFLRRAVRYLAEEAGIRQFLDLGSGLP 80 (267)
T ss_dssp HHHHHHHHHHHHHHHCTT---EEEEET--S-
T ss_pred HHHHHHHHHHHHHHHHhcCcceEEEcccCCC
Confidence 3345666655544 58889999999853
No 258
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=21.49 E-value=52 Score=23.36 Aligned_cols=30 Identities=17% Similarity=0.107 Sum_probs=18.9
Q ss_pred HHHHHHHHHhc-----CCCeEEEeccchHHHHHHH
Q 043521 33 AQFLSMLLKLI-----NAKNTMEIGVYTGYSLLYT 62 (71)
Q Consensus 33 g~~L~~l~~~~-----~~k~iLEIGT~~GySal~l 62 (71)
..||..+.+.. +..+.||.|+|+|--|-.+
T Consensus 39 ~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~l 73 (218)
T PF05891_consen 39 RNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGL 73 (218)
T ss_dssp HHHHHCCCT---------SEEEEET-TTTHHHHHT
T ss_pred HHHHHHHHhhcccCCCCcceEEecccccchhHHHH
Confidence 36777666653 5678999999999877543
No 259
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=21.38 E-value=1.8e+02 Score=21.24 Aligned_cols=31 Identities=35% Similarity=0.311 Sum_probs=21.0
Q ss_pred HHHHHHhcCCCeEEEeccchHHHHHHHHhhCCC
Q 043521 36 LSMLLKLINAKNTMEIGVYTGYSLLYTALAIPD 68 (71)
Q Consensus 36 L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~ 68 (71)
+...+...++++|+-||. |++++.+|..+..
T Consensus 140 l~~~l~~~~~~~vvVvGg--G~~g~e~A~~l~~ 170 (444)
T PRK09564 140 LKELLKDEEIKNIVIIGA--GFIGLEAVEAAKH 170 (444)
T ss_pred HHHHHhhcCCCEEEEECC--CHHHHHHHHHHHh
Confidence 333444457899999996 6677777776543
No 260
>PRK07236 hypothetical protein; Provisional
Probab=21.35 E-value=77 Score=22.78 Aligned_cols=19 Identities=16% Similarity=0.127 Sum_probs=12.3
Q ss_pred cCCCeEEEeccchHHHHHH
Q 043521 43 INAKNTMEIGVYTGYSLLY 61 (71)
Q Consensus 43 ~~~k~iLEIGT~~GySal~ 61 (71)
..+.+|+-||.|.+-.++.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A 22 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAA 22 (386)
T ss_pred CCCCeEEEECCCHHHHHHH
Confidence 3457889999866544433
No 261
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=20.90 E-value=67 Score=23.80 Aligned_cols=23 Identities=9% Similarity=0.161 Sum_probs=18.7
Q ss_pred hcCCCeEEEeccchHHHHHHHHh
Q 043521 42 LINAKNTMEIGVYTGYSLLYTAL 64 (71)
Q Consensus 42 ~~~~k~iLEIGT~~GySal~lA~ 64 (71)
-.+-.+|||-=||.||.|+.-++
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~ 154 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALE 154 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHH
Confidence 34557999999999999997554
No 262
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=20.59 E-value=71 Score=24.38 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=17.6
Q ss_pred cCCCeEEEeccchHHHHHHHHhhCCCCC
Q 043521 43 INAKNTMEIGVYTGYSLLYTALAIPDDG 70 (71)
Q Consensus 43 ~~~k~iLEIGT~~GySal~lA~al~~~g 70 (71)
.++++|.-||.| .+++..|..+.+.|
T Consensus 8 ~~~~~VaIIGAG--~aGL~aA~~l~~~G 33 (461)
T PLN02172 8 INSQHVAVIGAG--AAGLVAARELRREG 33 (461)
T ss_pred CCCCCEEEECCc--HHHHHHHHHHHhcC
Confidence 456889999984 56666666655443
No 263
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=20.57 E-value=19 Score=28.40 Aligned_cols=42 Identities=17% Similarity=0.194 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEeccchHHHHHHHHhhCCCC
Q 043521 28 STPDEAQFLSMLLKLINAKNTMEIGVYTGYSLLYTALAIPDD 69 (71)
Q Consensus 28 i~~~~g~~L~~l~~~~~~k~iLEIGT~~GySal~lA~al~~~ 69 (71)
+.|.++..+...+...+-+-||++||..+--|+..|.-+.+|
T Consensus 65 v~p~~~~vvfr~~~~e~~rlilQ~gT~sa~lA~e~A~lv~nD 106 (477)
T KOG2334|consen 65 VDPSDSTVVFRTCPAENSRLILQIGTASAELALEAAKLVDND 106 (477)
T ss_pred ecCCcceEEEEechhhcCeEEEEecCCcHHHHHHHHHHhhcc
Confidence 344455555566666666999999999999999988877654
No 264
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=20.45 E-value=2.3e+02 Score=21.22 Aligned_cols=35 Identities=9% Similarity=0.128 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCCC---eEEEeccchHHHHHHHHhhCCC
Q 043521 34 QFLSMLLKLINAK---NTMEIGVYTGYSLLYTALAIPD 68 (71)
Q Consensus 34 ~~L~~l~~~~~~k---~iLEIGT~~GySal~lA~al~~ 68 (71)
-|=.+++...+|. ++||++.|+|-.|..+.+..+.
T Consensus 87 lWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s 124 (296)
T KOG1540|consen 87 LWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKS 124 (296)
T ss_pred HHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhcc
Confidence 3444555555554 8999999999999999987764
Done!