BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043522
(84 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B2JDN2|PNP_BURP8 Polyribonucleotide nucleotidyltransferase OS=Burkholderia phymatum
(strain DSM 17167 / STM815) GN=pnp PE=3 SV=1
Length = 712
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
LHYNM PP TGR + KRRE R KR+ + + EE+G+++R
Sbjct: 385 LHYNM-PPFATGETGRVGSPKRREIGHGRLAKRALAACLPSAEEFGYSIR 433
>sp|Q1GXD2|PNP_METFK Polyribonucleotide nucleotidyltransferase OS=Methylobacillus
flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=pnp
PE=3 SV=1
Length = 714
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
LHYNM PP TGR T KRRE R KR+ + EE+G+ +R
Sbjct: 378 LHYNM-PPYATGETGRVGTPKRREIGHGRLAKRALLAVLPSQEEFGYTIR 426
>sp|Q82XT0|PNP_NITEU Polyribonucleotide nucleotidyltransferase OS=Nitrosomonas europaea
(strain ATCC 19718 / NBRC 14298) GN=pnp PE=3 SV=1
Length = 708
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
LHYNM PP TGR T KRRE R KR+ EE+G+++R
Sbjct: 378 LHYNM-PPFATGETGRVGTPKRREIGHGRLAKRALLAVIPPVEEFGYSMR 426
>sp|A9AJP0|PNP_BURM1 Polyribonucleotide nucleotidyltransferase OS=Burkholderia
multivorans (strain ATCC 17616 / 249) GN=pnp PE=3 SV=1
Length = 715
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
LHYNM PP TGR + KRRE R KR+ + EE+G+++R
Sbjct: 385 LHYNM-PPFATGETGRVGSPKRREIGHGRLAKRALVACLPSAEEFGYSIR 433
>sp|Q2Y5X9|PNP_NITMU Polyribonucleotide nucleotidyltransferase OS=Nitrosospira
multiformis (strain ATCC 25196 / NCIMB 11849) GN=pnp
PE=3 SV=1
Length = 701
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
LHYNM PP TGR T KRRE R KR+ + EE+G+++R
Sbjct: 377 LHYNM-PPYATGETGRVGTPKRREIGHGRLAKRALVAVLPSPEEFGYSLR 425
>sp|Q142H7|PNP_BURXL Polyribonucleotide nucleotidyltransferase OS=Burkholderia
xenovorans (strain LB400) GN=pnp PE=3 SV=1
Length = 716
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
LHYNM PP TGR + KRRE R KR+ + + +E+G+++R
Sbjct: 385 LHYNM-PPFATGETGRVGSPKRREIGHGRLAKRALAACLPSADEFGYSIR 433
>sp|B2T2E3|PNP_BURPP Polyribonucleotide nucleotidyltransferase OS=Burkholderia
phytofirmans (strain DSM 17436 / PsJN) GN=pnp PE=3 SV=1
Length = 718
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
LHYNM PP TGR + KRRE R KR+ + + +E+G+++R
Sbjct: 385 LHYNM-PPFATGETGRVGSPKRREIGHGRLAKRALAACLPSADEFGYSIR 433
>sp|Q2SZN9|PNP_BURTA Polyribonucleotide nucleotidyltransferase OS=Burkholderia
thailandensis (strain E264 / ATCC 700388 / DSM 13276 /
CIP 106301) GN=pnp PE=3 SV=1
Length = 713
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
LHYNM PP TGR + KRRE R KR+ + +E+G+++R
Sbjct: 385 LHYNM-PPFATGETGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIR 433
>sp|Q63VN7|PNP_BURPS Polyribonucleotide nucleotidyltransferase OS=Burkholderia
pseudomallei (strain K96243) GN=pnp PE=3 SV=1
Length = 713
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
LHYNM PP TGR + KRRE R KR+ + +E+G+++R
Sbjct: 385 LHYNM-PPFATGETGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIR 433
>sp|A3N7L3|PNP_BURP6 Polyribonucleotide nucleotidyltransferase OS=Burkholderia
pseudomallei (strain 668) GN=pnp PE=3 SV=1
Length = 713
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
LHYNM PP TGR + KRRE R KR+ + +E+G+++R
Sbjct: 385 LHYNM-PPFATGETGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIR 433
>sp|Q3JUB3|PNP_BURP1 Polyribonucleotide nucleotidyltransferase OS=Burkholderia
pseudomallei (strain 1710b) GN=pnp PE=3 SV=1
Length = 713
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
LHYNM PP TGR + KRRE R KR+ + +E+G+++R
Sbjct: 385 LHYNM-PPFATGETGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIR 433
>sp|A3NTA2|PNP_BURP0 Polyribonucleotide nucleotidyltransferase OS=Burkholderia
pseudomallei (strain 1106a) GN=pnp PE=3 SV=1
Length = 713
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
LHYNM PP TGR + KRRE R KR+ + +E+G+++R
Sbjct: 385 LHYNM-PPFATGETGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIR 433
>sp|A1V2L2|PNP_BURMS Polyribonucleotide nucleotidyltransferase OS=Burkholderia mallei
(strain SAVP1) GN=pnp PE=3 SV=1
Length = 713
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
LHYNM PP TGR + KRRE R KR+ + +E+G+++R
Sbjct: 385 LHYNM-PPFATGETGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIR 433
>sp|Q62IN1|PNP_BURMA Polyribonucleotide nucleotidyltransferase OS=Burkholderia mallei
(strain ATCC 23344) GN=pnp PE=3 SV=1
Length = 713
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
LHYNM PP TGR + KRRE R KR+ + +E+G+++R
Sbjct: 385 LHYNM-PPFATGETGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIR 433
>sp|A2S463|PNP_BURM9 Polyribonucleotide nucleotidyltransferase OS=Burkholderia mallei
(strain NCTC 10229) GN=pnp PE=3 SV=1
Length = 713
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
LHYNM PP TGR + KRRE R KR+ + +E+G+++R
Sbjct: 385 LHYNM-PPFATGETGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIR 433
>sp|A3MI97|PNP_BURM7 Polyribonucleotide nucleotidyltransferase OS=Burkholderia mallei
(strain NCTC 10247) GN=pnp PE=3 SV=1
Length = 713
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
LHYNM PP TGR + KRRE R KR+ + +E+G+++R
Sbjct: 385 LHYNM-PPFATGETGRVGSPKRREIGHGRLAKRALVACLPSADEFGYSIR 433
>sp|A4JGD4|PNP_BURVG Polyribonucleotide nucleotidyltransferase OS=Burkholderia
vietnamiensis (strain G4 / LMG 22486) GN=pnp PE=3 SV=1
Length = 715
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRC-SNFEEWGHNVR 74
LHYNM PP TGR + KRRE R KR + V+C + +E+G+++R
Sbjct: 385 LHYNM-PPFATGETGRVGSPKRREIGHGRLAKR-ALVKCLPSADEFGYSIR 433
>sp|Q39EE1|PNP_BURS3 Polyribonucleotide nucleotidyltransferase OS=Burkholderia sp.
(strain 383) GN=pnp PE=3 SV=1
Length = 715
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRC-SNFEEWGHNVR 74
LHYNM PP TGR + KRRE R KR + V+C + +E+G+++R
Sbjct: 385 LHYNM-PPFATGETGRVGSPKRREIGHGRLAKR-ALVKCLPSADEFGYSIR 433
>sp|Q0BDC6|PNP_BURCM Polyribonucleotide nucleotidyltransferase OS=Burkholderia ambifaria
(strain ATCC BAA-244 / AMMD) GN=pnp PE=3 SV=1
Length = 714
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRC-SNFEEWGHNVR 74
LHYNM PP TGR + KRRE R KR + V+C + +E+G+++R
Sbjct: 385 LHYNM-PPFATGETGRVGSPKRREIGHGRLAKR-ALVKCLPSADEFGYSIR 433
>sp|B4E5M6|PNP_BURCJ Polyribonucleotide nucleotidyltransferase OS=Burkholderia cepacia
(strain J2315 / LMG 16656) GN=pnp PE=3 SV=1
Length = 713
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRC-SNFEEWGHNVR 74
LHYNM PP TGR + KRRE R KR + V+C + +E+G+++R
Sbjct: 383 LHYNM-PPFATGETGRVGSPKRREIGHGRLAKR-ALVKCLPSADEFGYSIR 431
>sp|A0K927|PNP_BURCH Polyribonucleotide nucleotidyltransferase OS=Burkholderia
cenocepacia (strain HI2424) GN=pnp PE=3 SV=1
Length = 715
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRC-SNFEEWGHNVR 74
LHYNM PP TGR + KRRE R KR + V+C + +E+G+++R
Sbjct: 385 LHYNM-PPFATGETGRVGSPKRREIGHGRLAKR-ALVKCLPSADEFGYSIR 433
>sp|B1JVP5|PNP_BURCC Polyribonucleotide nucleotidyltransferase OS=Burkholderia
cenocepacia (strain MC0-3) GN=pnp PE=3 SV=1
Length = 715
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRC-SNFEEWGHNVR 74
LHYNM PP TGR + KRRE R KR + V+C + +E+G+++R
Sbjct: 385 LHYNM-PPFATGETGRVGSPKRREIGHGRLAKR-ALVKCLPSADEFGYSIR 433
>sp|Q1BV09|PNP_BURCA Polyribonucleotide nucleotidyltransferase OS=Burkholderia
cenocepacia (strain AU 1054) GN=pnp PE=3 SV=1
Length = 715
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRC-SNFEEWGHNVR 74
LHYNM PP TGR + KRRE R KR + V+C + +E+G+++R
Sbjct: 385 LHYNM-PPFATGETGRVGSPKRREIGHGRLAKR-ALVKCLPSADEFGYSIR 433
>sp|B1YTR1|PNP_BURA4 Polyribonucleotide nucleotidyltransferase OS=Burkholderia ambifaria
(strain MC40-6) GN=pnp PE=3 SV=1
Length = 714
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRC-SNFEEWGHNVR 74
LHYNM PP TGR + KRRE R KR + V+C + +E+G+++R
Sbjct: 385 LHYNM-PPFATGETGRVGSPKRREIGHGRLAKR-ALVKCLPSADEFGYSIR 433
>sp|Q3SKX5|PNP_THIDA Polyribonucleotide nucleotidyltransferase OS=Thiobacillus
denitrificans (strain ATCC 25259) GN=pnp PE=3 SV=1
Length = 706
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
LHYNM PP TGR + KRRE R KR+ + EE+G+ +R
Sbjct: 378 LHYNM-PPYATGETGRVGSPKRREIGHGRLAKRALLAVLPSKEEFGYTMR 426
>sp|Q0AE53|PNP_NITEC Polyribonucleotide nucleotidyltransferase OS=Nitrosomonas eutropha
(strain C91) GN=pnp PE=3 SV=1
Length = 705
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
LHYNM PP TGR + KRRE R KR+ EE+G+ +R
Sbjct: 378 LHYNM-PPFATGETGRVGSPKRREIGHGRLAKRALLAVLPPVEEFGYAMR 426
>sp|A6SY02|PNP_JANMA Polyribonucleotide nucleotidyltransferase OS=Janthinobacterium sp.
(strain Marseille) GN=pnp PE=3 SV=1
Length = 711
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
LHYNM PP TGR T KRRE R KR+ E++ ++VR
Sbjct: 383 LHYNM-PPFATGETGRVGTPKRREIGHGRLAKRALVAALPAPEDFSYSVR 431
>sp|Q21YD1|PNP_RHOFD Polyribonucleotide nucleotidyltransferase OS=Rhodoferax
ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118)
GN=pnp PE=3 SV=1
Length = 706
Score = 37.4 bits (85), Expect = 0.030, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
LHYNM PP TGR T KRRE R KR+ + EE+ + +R
Sbjct: 380 LHYNM-PPFATGETGRVGTPKRREIGHGRLAKRALMAVLPSKEEFPYTMR 428
>sp|A4G647|PNP_HERAR Polyribonucleotide nucleotidyltransferase OS=Herminiimonas
arsenicoxydans GN=pnp PE=3 SV=1
Length = 710
Score = 37.0 bits (84), Expect = 0.031, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
LHYNM PP TGR T KRRE R KR+ E++ ++VR
Sbjct: 383 LHYNM-PPFATGETGRVGTPKRREIGHGRLAKRALIAALPAPEDFSYSVR 431
>sp|B2U7R6|PNP_RALPJ Polyribonucleotide nucleotidyltransferase OS=Ralstonia pickettii
(strain 12J) GN=pnp PE=3 SV=1
Length = 724
Score = 37.0 bits (84), Expect = 0.036, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
LHYNM PP TGR + KRRE R KR+ +E+G+ +R
Sbjct: 380 LHYNM-PPFATGETGRVGSPKRREVGHGRLAKRALIPVLPPADEFGYTIR 428
>sp|A1AWB1|PNP_RUTMC Polyribonucleotide nucleotidyltransferase OS=Ruthia magnifica
subsp. Calyptogena magnifica GN=pnp PE=3 SV=1
Length = 695
Score = 35.8 bits (81), Expect = 0.073, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
LHYN PP + GR T KRRE R +R + + EE+ + VR
Sbjct: 380 LHYN-FPPYCVGEIGRVGTTKRREIGHGRLVRRGIAACLPSIEEFPYTVR 428
>sp|A1VM56|PNP_POLNA Polyribonucleotide nucleotidyltransferase OS=Polaromonas
naphthalenivorans (strain CJ2) GN=pnp PE=3 SV=1
Length = 703
Score = 35.4 bits (80), Expect = 0.097, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
LHYNM PP TGR + KRRE R KR+ + EE+ + +R
Sbjct: 380 LHYNM-PPFATGETGRVGSPKRREIGHGRLAKRALIAVLPSKEEFPYTMR 428
>sp|Q127W8|PNP_POLSJ Polyribonucleotide nucleotidyltransferase OS=Polaromonas sp.
(strain JS666 / ATCC BAA-500) GN=pnp PE=3 SV=1
Length = 707
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
LHYNM PP TGR + KRRE R KR+ EE+ + +R
Sbjct: 380 LHYNM-PPFATGETGRVGSPKRREIGHGRLAKRALIAVLPTKEEFPYTMR 428
>sp|B1Y823|PNP_LEPCP Polyribonucleotide nucleotidyltransferase OS=Leptothrix cholodnii
(strain ATCC 51168 / LMG 8142 / SP-6) GN=pnp PE=3 SV=1
Length = 767
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
HYNM PP GR T KRRE R KR+ +E+G+ +R
Sbjct: 380 FHYNM-PPFATGEVGRMGTTKRRETGHGRLAKRALVPLLPPKDEFGYTIR 428
>sp|Q8XXP6|PNP_RALSO Polyribonucleotide nucleotidyltransferase OS=Ralstonia solanacearum
(strain GMI1000) GN=pnp PE=3 SV=1
Length = 717
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
LHYNM PP TGR + KRRE R KR+ +E+ + +R
Sbjct: 378 LHYNM-PPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKEDEFAYTIR 426
>sp|Q1LPW7|PNP_RALME Polyribonucleotide nucleotidyltransferase OS=Ralstonia
metallidurans (strain CH34 / ATCC 43123 / DSM 2839)
GN=pnp PE=3 SV=1
Length = 725
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
LHYNM PP TGR + KRRE R KR+ +E+ + +R
Sbjct: 380 LHYNM-PPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKDDEFAYTIR 428
>sp|Q473U7|PNP_CUPPJ Polyribonucleotide nucleotidyltransferase OS=Cupriavidus
pinatubonensis (strain JMP134 / LMG 1197) GN=pnp PE=3
SV=1
Length = 728
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
LHYNM PP TGR + KRRE R KR+ +E+ + +R
Sbjct: 380 LHYNM-PPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKDDEFAYTIR 428
>sp|Q0KCT4|PNP_CUPNH Polyribonucleotide nucleotidyltransferase OS=Cupriavidus necator
(strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=pnp
PE=3 SV=1
Length = 723
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
LHYNM PP TGR + KRRE R KR+ +E+ + +R
Sbjct: 380 LHYNM-PPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKDDEFAYTIR 428
>sp|B3R3W3|PNP_CUPTR Polyribonucleotide nucleotidyltransferase OS=Cupriavidus
taiwanensis (strain R1 / LMG 19424) GN=pnp PE=3 SV=1
Length = 723
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
LHYNM PP TGR + KRRE R KR+ +E+ + +R
Sbjct: 380 LHYNM-PPFATGETGRVGSPKRREIGHGRLAKRALIPVLPKEDEFAYTIR 428
>sp|A1WXU7|PNP_HALHL Polyribonucleotide nucleotidyltransferase OS=Halorhodospira
halophila (strain DSM 244 / SL1) GN=pnp PE=3 SV=1
Length = 702
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 18 ESRWPPELHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
E R P LHYN PP + TG T KRRE + KR + EE+ + +R
Sbjct: 378 ERREPFMLHYN-FPPYCVGETGFIGTPKRREIGHGKLAKRGVEAVMPSDEEFPYVIR 433
>sp|Q2KWI6|PNP_BORA1 Polyribonucleotide nucleotidyltransferase OS=Bordetella avium
(strain 197N) GN=pnp PE=3 SV=1
Length = 718
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
LHYNM PP TGR KRRE R KRS E++ + +R
Sbjct: 383 LHYNM-PPFATGETGRIGVPKRREIGHGRLAKRSLVPVLPKPEDFQYTIR 431
>sp|A5CWW8|PNP_VESOH Polyribonucleotide nucleotidyltransferase OS=Vesicomyosocius
okutanii subsp. Calyptogena okutanii (strain HA) GN=pnp
PE=3 SV=1
Length = 695
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
LHYN PP + TGR T KRRE +R + + EE+ + VR
Sbjct: 380 LHYN-FPPYCVGETGRLATIKRREIGHGHLARRGITACLPSIEEFPYTVR 428
>sp|A4SXQ7|PNP_POLSQ Polyribonucleotide nucleotidyltransferase OS=Polynucleobacter
necessarius subsp. asymbioticus (strain DSM 18221 / CIP
109841 / QLW-P1DMWA-1) GN=pnp PE=3 SV=1
Length = 722
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
HYNM PP TGR + KRRE R KR+ + E++ +++R
Sbjct: 379 FHYNM-PPFATGETGRVGSPKRREIGHGRLAKRALIPVLPSAEDFAYSIR 427
>sp|B1XUJ5|PNP_POLNS Polyribonucleotide nucleotidyltransferase OS=Polynucleobacter
necessarius subsp. necessarius (strain STIR1) GN=pnp
PE=3 SV=1
Length = 722
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
HYNM PP TGR + KRRE R KR+ + E++ +++R
Sbjct: 379 FHYNM-PPFATGETGRVGSPKRREIGHGRLAKRALIPVLPSAEDFAYSIR 427
>sp|A9IGJ9|PNP_BORPD Polyribonucleotide nucleotidyltransferase OS=Bordetella petrii
(strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=pnp
PE=3 SV=1
Length = 719
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
LHYNM PP TGR KRRE R KR+ E++ + +R
Sbjct: 383 LHYNM-PPFATGETGRIGVPKRREIGHGRLAKRALVSLLPAHEDFQYTIR 431
>sp|A9BNB8|PNP_DELAS Polyribonucleotide nucleotidyltransferase OS=Delftia acidovorans
(strain DSM 14801 / SPH-1) GN=pnp PE=3 SV=1
Length = 753
Score = 33.5 bits (75), Expect = 0.35, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
HYNM PP GR + KRRE R KR+ + + EE+ + +R
Sbjct: 380 FHYNM-PPFATGEVGRMGSTKRREIGHGRLAKRALAACLPSKEEFPYTIR 428
>sp|C4K3E6|PNP_HAMD5 Polyribonucleotide nucleotidyltransferase OS=Hamiltonella defensa
subsp. Acyrthosiphon pisum (strain 5AT) GN=pnp PE=3 SV=1
Length = 716
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
HYN PP + TG + KRRE R KR+ N EE+ + VR
Sbjct: 378 FHYN-FPPYSVGETGMLGSPKRREIGHARLAKRALMAVMPNIEEFPYTVR 426
>sp|A1WLP8|PNP_VEREI Polyribonucleotide nucleotidyltransferase OS=Verminephrobacter
eiseniae (strain EF01-2) GN=pnp PE=3 SV=1
Length = 757
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
LHYNM PP GR + KRRE R KR+ EE+ + +R
Sbjct: 380 LHYNM-PPFATGEVGRMGSTKRREIGHGRLAKRALVAVLPTKEEFPYTMR 428
>sp|Q482T5|PNP_COLP3 Polyribonucleotide nucleotidyltransferase OS=Colwellia
psychrerythraea (strain 34H / ATCC BAA-681) GN=pnp PE=3
SV=1
Length = 705
Score = 33.5 bits (75), Expect = 0.40, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 22 PPELHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
P LHYN PP + TG + KRRE R KR + EE+ + VR
Sbjct: 375 PFMLHYN-FPPYCVGETGFVGSPKRREIGHGRLAKRGMLAVMPSLEEFPYAVR 426
>sp|A1ST53|PNP_PSYIN Polyribonucleotide nucleotidyltransferase OS=Psychromonas
ingrahamii (strain 37) GN=pnp PE=3 SV=1
Length = 698
Score = 33.1 bits (74), Expect = 0.45, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 25 LHYNMLPPIIIRTTGRPQTKKRREADENRAFKRSSSVRCSNFEEWGHNVR 74
LHYN PP + TG + KRRE R KR + EE+ + VR
Sbjct: 377 LHYN-FPPYCVGETGFVGSPKRREIGHGRLAKRGVLAVMPSLEEFPYTVR 425
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,464,565
Number of Sequences: 539616
Number of extensions: 1150392
Number of successful extensions: 1968
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 102
Number of HSP's that attempted gapping in prelim test: 1932
Number of HSP's gapped (non-prelim): 138
length of query: 84
length of database: 191,569,459
effective HSP length: 55
effective length of query: 29
effective length of database: 161,890,579
effective search space: 4694826791
effective search space used: 4694826791
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)