BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043523
(650 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 165/659 (25%), Positives = 260/659 (39%), Gaps = 147/659 (22%)
Query: 13 FPEKI---LQVPTLETLDLSENQLLQGSLPNF---PKNSSLRNLILSGTGFSGTLPDSIG 66
FP K+ L++ +LE LDLS N + ++ + L++L +SG SG
Sbjct: 140 FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD------ 193
Query: 67 NLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFN 126
V+V RC L +D SSN+FS IP L L++LD+S N
Sbjct: 194 -------VDVSRC-------------VNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGN 233
Query: 127 NLSGGISSTFWEQXXXXXXXXXXXXXXXGSIPRSLFLLPNLETLWLSNNQFENQLPEIXX 186
LSG S R++ L+ L +S+NQF +P
Sbjct: 234 KLSGDFS-------------------------RAISTCTELKLLNISSNQFVGPIP---- 264
Query: 187 XXXXXXXXXXXXGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQ 246
P+P L++L L L+ NKF+ IP +
Sbjct: 265 ------------------PLP------LKSLQYLSLAENKFTG---------EIPDFLSG 291
Query: 247 S--QLSGLDISNNQIPGEIPNWIWEXXXXXXXXXXXXXXXXXXXQEPY-SISSIRLLDLH 303
+ L+GLD+S N G +P + + + +++LDL
Sbjct: 292 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351
Query: 304 SNQLRGNIPHMSTNTSY----VDYSNNHFT--FIPADIGNFMSETEYFFAANNSLVGVIP 357
N+ G +P TN S +D S+N+F+ +P N + + + NN G IP
Sbjct: 352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411
Query: 358 ESVCKGIYFQVLDLSNNNLSGTIPACLIAQSEXXXXXXXXXXXXXXXXXSDTIFPRNCGL 417
++ L LS N LSGTIP+ L + S+ + ++ +
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP-QELMYVKTLET 470
Query: 418 QILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSG 477
ILD N L G +P L+NC L + L NN ++ P W+G +L +L L +N+FSG
Sbjct: 471 LILDF--NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528
Query: 478 HISCPRNNVSWPLLQIVDLASNKFSGRL-----------------SQKWLLTMEEMMVAE 520
+I P L +DL +N F+G + ++++ + M E
Sbjct: 529 NI--PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE 586
Query: 521 TKSGSELKHLRYVIS--------------SNQFYXXXXXXXXXXXXXMLLKVPNIFTSID 566
L + + S +++ Y M+ +D
Sbjct: 587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF--------LD 638
Query: 567 FSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP 625
S N G IP+E+G L+ LN+ HN ++GSIP G+L+ + LDLS N L G+IP
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 157/601 (26%), Positives = 230/601 (38%), Gaps = 110/601 (18%)
Query: 23 LETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFT 82
LE LD+S N G +P S+L++L +SG SG +I L + + F
Sbjct: 202 LEFLDVSSNNFSTG-IPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260
Query: 83 GPIPPSMANLTQLFHMDFSSNHFSGHIPSL--HKSRNLKYLDLSFNNLSGGISSTFWEQX 140
GPIPP L L ++ + N F+G IP L LDLS N+ G + F+
Sbjct: 261 GPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP-PFFGSC 317
Query: 141 XXXXXXXXXXXXXXGSIP-RSLFLLPNLETLWLSNNQFENQLPEIXXXXXXXXXXXXXXG 199
G +P +L + L+ L LS N+F +LPE
Sbjct: 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 377
Query: 200 NRLEGPVPISIIFELRN-LYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQ 258
N GP+ ++ +N L L L +N F+ ++ P L N S+L L +S N
Sbjct: 378 NNFSGPILPNLCQNPKNTLQELYLQNNGFTG--------KIPPTLSNCSELVSLHLSFNY 429
Query: 259 IPGEIPNWIWEXXXXXXXXXXXXXXXXXXXQEPYSISSIRLLDLHSNQLRGNIPHM---S 315
+ G IP+ + QE + ++ L L N L G IP
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489
Query: 316 TNTSYVDYSNNHFTF-IPADIGNFMSETEYFFAANNSLVGVIPESV--CKGIYFQVLDLS 372
TN +++ SNN T IP IG + +NNS G IP + C+ + + LDL+
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIW--LDLN 546
Query: 373 NNNLSGTIPACLIAQSEXXXXXXXXXXXXXXXXXSDTIFPRNCGLQILDLGGNQL---QG 429
N +GTIPA + QS ++ +N G++ G L QG
Sbjct: 547 TNLFNGTIPAAMFKQSGKIAANFIAGKRY--------VYIKNDGMKKECHGAGNLLEFQG 598
Query: 430 VVPKSLAN------CNM------------------LQVLDLKNNHISDNFPCWLGNASSL 465
+ + L CN+ + LD+ N +S P +G+ L
Sbjct: 599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL 658
Query: 466 QVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGS 525
+L L N+ SG I P L I+DL+SNK GR+ Q M A T
Sbjct: 659 FILNLGHNDISGSI--PDEVGDLRGLNILDLSSNKLDGRIPQA--------MSALT---- 704
Query: 526 ELKHLRYVISSNQFYXXXXXXXXXXXXXMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKS 585
+ T ID S+NN GPIP EMG+F++
Sbjct: 705 -----------------------------------MLTEIDLSNNNLSGPIP-EMGQFET 728
Query: 586 L 586
Sbjct: 729 F 729
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 137/538 (25%), Positives = 213/538 (39%), Gaps = 75/538 (13%)
Query: 2 LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTL 61
LD+S L G F I L+ L++S NQ + G +P P SL+ L L+ F+G +
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFV-GPIPPLPL-KSLQYLSLAENKFTGEI 285
Query: 62 PDSI-GNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIP--SLHKSRNL 118
PD + G + LT +++ +F G +PP + + L + SSN+FSG +P +L K R L
Sbjct: 286 PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 345
Query: 119 KYLDLSFNNLSGGISSTFWEQXXXXXXXXXXXXXXXGSIPRSLFLLPN--LETLWLSNNQ 176
K LDLSFN SG + + G I +L P L+ L+L NN
Sbjct: 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405
Query: 177 FENQLPEIXXXXXXXXXXXXXXG-----------------------NRLEGPVPISIIFE 213
F ++P N LEG +P +++
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY- 464
Query: 214 LRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEXXXX 273
++ L TL L N + + L N + L+ + +SNN++ GEIP WI
Sbjct: 465 VKTLETLILDFNDLTG--------EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516
Query: 274 XXXXXXXXXXXXXXXQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPA 333
E S+ LDL++N G IP F
Sbjct: 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA------------MFKQSGK 564
Query: 334 DIGNFMSETEYFFAANNSLVGVIPESVCKG----IYFQVLDLSNNNLSGTIPACLIAQSE 389
NF++ Y + N+ + + C G + FQ + N T C I
Sbjct: 565 IAANFIAGKRYVYIKNDGM-----KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR- 618
Query: 390 XXXXXXXXXXXXXXXXXSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNN 449
+ F N + LD+ N L G +PK + + L +L+L +N
Sbjct: 619 ------------VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 666
Query: 450 HISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQ 507
IS + P +G+ L +L L SN G I P+ + +L +DL++N SG + +
Sbjct: 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRI--PQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 143/544 (26%), Positives = 211/544 (38%), Gaps = 88/544 (16%)
Query: 100 FSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQXXXXXXXXXXXXXXXGSIPR 159
S++H +G + S +L LDLS N+LSG ++ T P
Sbjct: 84 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVT-TLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 160 SL---FLLPNLETLWLSNNQFE--NQLPEIXXXXXXXXXXXXXXGNRLEGPVPISIIFEL 214
+ L +LE L LS N N + + GN++ G V +S
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS---RC 199
Query: 215 RNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEXXXXX 274
NL LD+SSN FS IP L + S L LDIS N++ G+ I
Sbjct: 200 VNLEFLDVSSNNFST---------GIPFLGDCSALQHLDISGNKLSGDFSRAI--STCTE 248
Query: 275 XXXXXXXXXXXXXXQEPYSISSIRLLDLHSNQLRGNIPHMSTNT----SYVDYSNNHF-T 329
P + S++ L L N+ G IP + + +D S NHF
Sbjct: 249 LKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308
Query: 330 FIPADIGNFMSETEYFFAANNSLVGVIP-ESVCKGIYFQVLDLSNNNLSGTIPACLIAQS 388
+P G+ ++NN G +P +++ K +VLDLS N SG +P L S
Sbjct: 309 AVPPFFGSCSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367
Query: 389 EXXXXXXXXXXXXXXXXXSDTIFPRNC-----GLQILDLGGNQLQGVVPKSLANCNMLQV 443
S I P C LQ L L N G +P +L+NC+ L
Sbjct: 368 ASLLTLDLSSNNF-----SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 422
Query: 444 LDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSG 503
L L N++S P LG+ S L+ L L N G I P+ + L+ + L N +G
Sbjct: 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI--PQELMYVKTLETLILDFNDLTG 480
Query: 504 RLSQKWLLTMEEMMVAETKSG-SELKHLRYVISSNQFYXXXXXXXXXXXXXMLLKVPNIF 562
E SG S +L +
Sbjct: 481 ----------------EIPSGLSNCTNLNW------------------------------ 494
Query: 563 TSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG 622
I S+N G IP+ +GR ++L L +S+N+ +G+IP+ G+ + + LDL+ N +G
Sbjct: 495 --ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552
Query: 623 KIPA 626
IPA
Sbjct: 553 TIPA 556
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 87/357 (24%), Positives = 149/357 (41%), Gaps = 55/357 (15%)
Query: 297 IRLLDLHSNQLRGNIP-HMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGV 355
++ L + N++ G++ N ++D S+N+F+ +G+ S ++ + N L G
Sbjct: 180 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGD-CSALQHLDISGNKLSGD 238
Query: 356 IPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSEXXXXXXXXXXXXXXXXXSDTIFPRNC 415
++ ++L++S+N G IP +
Sbjct: 239 FSRAISTCTELKLLNISSNQFVGPIPPLPLKS---------------------------- 270
Query: 416 GLQILDLGGNQLQGVVPKSLAN-CNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNN 474
LQ L L N+ G +P L+ C+ L LDL NH P + G+ S L+ L L SNN
Sbjct: 271 -LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329
Query: 475 FSGHISCPRNNV-SWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYV 533
FSG + P + + L+++DL+ N+FSG L + ++ +
Sbjct: 330 FSGEL--PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD------------- 374
Query: 534 ISSNQFYXXXXXXXXXXXXXMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSH 593
+SSN F + N + +N F G IP + L +L++S
Sbjct: 375 LSSNNF-------SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427
Query: 594 NALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQXXXXXXXXXXXXXXXXXVGKIPT 650
N L+G+IPSS G+L ++ L L +N L G+IP + G+IP+
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 24/113 (21%)
Query: 2 LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTL 61
LD+S L G P++I +P L L+L N + SG++
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI------------------------SGSI 672
Query: 62 PDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHK 114
PD +G+L L +++ G IP +M+ LT L +D S+N+ SG IP + +
Sbjct: 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQ 725
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 82/207 (39%), Gaps = 26/207 (12%)
Query: 2 LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPN--FPKNSSLRNLILSGTGFSG 59
L LS G P ++ +L LDL+ N L G++P F ++ + ++G +
Sbjct: 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTN-LFNGTIPAAMFKQSGKIAANFIAGKRYVY 577
Query: 60 TLPDSI-------GNL--------ENLTWVEVRR-CNFT-----GPIPPSMANLTQLFHM 98
D + GNL E L + R CN T G P+ N + +
Sbjct: 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637
Query: 99 DFSSNHFSGHIPS-LHKSRNLKYLDLSFNNLSGGISSTFWEQXXXXXXXXXXXXXXXGSI 157
D S N SG+IP + L L+L N++SG I + G I
Sbjct: 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD-LRGLNILDLSSNKLDGRI 696
Query: 158 PRSLFLLPNLETLWLSNNQFENQLPEI 184
P+++ L L + LSNN +PE+
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGPIPEM 723
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 165/659 (25%), Positives = 260/659 (39%), Gaps = 147/659 (22%)
Query: 13 FPEKI---LQVPTLETLDLSENQLLQGSLPNF---PKNSSLRNLILSGTGFSGTLPDSIG 66
FP K+ L++ +LE LDLS N + ++ + L++L +SG SG
Sbjct: 137 FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD------ 190
Query: 67 NLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFN 126
V+V RC L +D SSN+FS IP L L++LD+S N
Sbjct: 191 -------VDVSRC-------------VNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGN 230
Query: 127 NLSGGISSTFWEQXXXXXXXXXXXXXXXGSIPRSLFLLPNLETLWLSNNQFENQLPEIXX 186
LSG S R++ L+ L +S+NQF +P
Sbjct: 231 KLSGDFS-------------------------RAISTCTELKLLNISSNQFVGPIP---- 261
Query: 187 XXXXXXXXXXXXGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQ 246
P+P L++L L L+ NKF+ IP +
Sbjct: 262 ------------------PLP------LKSLQYLSLAENKFTG---------EIPDFLSG 288
Query: 247 S--QLSGLDISNNQIPGEIPNWIWEXXXXXXXXXXXXXXXXXXXQEPY-SISSIRLLDLH 303
+ L+GLD+S N G +P + + + +++LDL
Sbjct: 289 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 348
Query: 304 SNQLRGNIPHMSTNTSY----VDYSNNHFT--FIPADIGNFMSETEYFFAANNSLVGVIP 357
N+ G +P TN S +D S+N+F+ +P N + + + NN G IP
Sbjct: 349 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 408
Query: 358 ESVCKGIYFQVLDLSNNNLSGTIPACLIAQSEXXXXXXXXXXXXXXXXXSDTIFPRNCGL 417
++ L LS N LSGTIP+ L + S+ + ++ +
Sbjct: 409 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP-QELMYVKTLET 467
Query: 418 QILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSG 477
ILD N L G +P L+NC L + L NN ++ P W+G +L +L L +N+FSG
Sbjct: 468 LILDF--NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 525
Query: 478 HISCPRNNVSWPLLQIVDLASNKFSGRL-----------------SQKWLLTMEEMMVAE 520
+I P L +DL +N F+G + ++++ + M E
Sbjct: 526 NI--PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE 583
Query: 521 TKSGSELKHLRYVIS--------------SNQFYXXXXXXXXXXXXXMLLKVPNIFTSID 566
L + + S +++ Y M+ +D
Sbjct: 584 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF--------LD 635
Query: 567 FSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP 625
S N G IP+E+G L+ LN+ HN ++GSIP G+L+ + LDLS N L G+IP
Sbjct: 636 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 694
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 157/601 (26%), Positives = 230/601 (38%), Gaps = 110/601 (18%)
Query: 23 LETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFT 82
LE LD+S N G +P S+L++L +SG SG +I L + + F
Sbjct: 199 LEFLDVSSNNFSTG-IPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 257
Query: 83 GPIPPSMANLTQLFHMDFSSNHFSGHIPSL--HKSRNLKYLDLSFNNLSGGISSTFWEQX 140
GPIPP L L ++ + N F+G IP L LDLS N+ G + F+
Sbjct: 258 GPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP-PFFGSC 314
Query: 141 XXXXXXXXXXXXXXGSIP-RSLFLLPNLETLWLSNNQFENQLPEIXXXXXXXXXXXXXXG 199
G +P +L + L+ L LS N+F +LPE
Sbjct: 315 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 374
Query: 200 NRLEGPVPISIIFELRN-LYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQ 258
N GP+ ++ +N L L L +N F+ ++ P L N S+L L +S N
Sbjct: 375 NNFSGPILPNLCQNPKNTLQELYLQNNGFTG--------KIPPTLSNCSELVSLHLSFNY 426
Query: 259 IPGEIPNWIWEXXXXXXXXXXXXXXXXXXXQEPYSISSIRLLDLHSNQLRGNIPHM---S 315
+ G IP+ + QE + ++ L L N L G IP
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 486
Query: 316 TNTSYVDYSNNHFTF-IPADIGNFMSETEYFFAANNSLVGVIPESV--CKGIYFQVLDLS 372
TN +++ SNN T IP IG + +NNS G IP + C+ + + LDL+
Sbjct: 487 TNLNWISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIW--LDLN 543
Query: 373 NNNLSGTIPACLIAQSEXXXXXXXXXXXXXXXXXSDTIFPRNCGLQILDLGGNQL---QG 429
N +GTIPA + QS ++ +N G++ G L QG
Sbjct: 544 TNLFNGTIPAAMFKQSGKIAANFIAGKRY--------VYIKNDGMKKECHGAGNLLEFQG 595
Query: 430 VVPKSLAN------CNM------------------LQVLDLKNNHISDNFPCWLGNASSL 465
+ + L CN+ + LD+ N +S P +G+ L
Sbjct: 596 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL 655
Query: 466 QVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGS 525
+L L N+ SG I P L I+DL+SNK GR+ Q M A T
Sbjct: 656 FILNLGHNDISGSI--PDEVGDLRGLNILDLSSNKLDGRIPQA--------MSALT---- 701
Query: 526 ELKHLRYVISSNQFYXXXXXXXXXXXXXMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKS 585
+ T ID S+NN GPIP EMG+F++
Sbjct: 702 -----------------------------------MLTEIDLSNNNLSGPIP-EMGQFET 725
Query: 586 L 586
Sbjct: 726 F 726
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 137/534 (25%), Positives = 211/534 (39%), Gaps = 75/534 (14%)
Query: 2 LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTL 61
LD+S L G F I L+ L++S NQ + G +P P SL+ L L+ F+G +
Sbjct: 225 LDISGNKLSGDFSRAISTCTELKLLNISSNQFV-GPIPPLPL-KSLQYLSLAENKFTGEI 282
Query: 62 PDSI-GNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIP--SLHKSRNL 118
PD + G + LT +++ +F G +PP + + L + SSN+FSG +P +L K R L
Sbjct: 283 PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 342
Query: 119 KYLDLSFNNLSGGISSTFWEQXXXXXXXXXXXXXXXGSIPRSLFLLPN--LETLWLSNNQ 176
K LDLSFN SG + + G I +L P L+ L+L NN
Sbjct: 343 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 402
Query: 177 FENQLPEIXXXXXXXXXXXXXXG-----------------------NRLEGPVPISIIFE 213
F ++P N LEG +P +++
Sbjct: 403 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY- 461
Query: 214 LRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEXXXX 273
++ L TL L N + + L N + L+ + +SNN++ GEIP WI
Sbjct: 462 VKTLETLILDFNDLTG--------EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 513
Query: 274 XXXXXXXXXXXXXXXQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPA 333
E S+ LDL++N G IP F
Sbjct: 514 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA------------MFKQSGK 561
Query: 334 DIGNFMSETEYFFAANNSLVGVIPESVCKG----IYFQVLDLSNNNLSGTIPACLIAQSE 389
NF++ Y + N+ + + C G + FQ + N T C I
Sbjct: 562 IAANFIAGKRYVYIKNDGM-----KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR- 615
Query: 390 XXXXXXXXXXXXXXXXXSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNN 449
+ F N + LD+ N L G +PK + + L +L+L +N
Sbjct: 616 ------------VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 663
Query: 450 HISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSG 503
IS + P +G+ L +L L SN G I P+ + +L +DL++N SG
Sbjct: 664 DISGSIPDEVGDLRGLNILDLSSNKLDGRI--PQAMSALTMLTEIDLSNNNLSG 715
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 143/544 (26%), Positives = 211/544 (38%), Gaps = 88/544 (16%)
Query: 100 FSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQXXXXXXXXXXXXXXXGSIPR 159
S++H +G + S +L LDLS N+LSG ++ T P
Sbjct: 81 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVT-TLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 160 SL---FLLPNLETLWLSNNQFE--NQLPEIXXXXXXXXXXXXXXGNRLEGPVPISIIFEL 214
+ L +LE L LS N N + + GN++ G V +S
Sbjct: 140 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS---RC 196
Query: 215 RNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEXXXXX 274
NL LD+SSN FS IP L + S L LDIS N++ G+ I
Sbjct: 197 VNLEFLDVSSNNFST---------GIPFLGDCSALQHLDISGNKLSGDFSRAI--STCTE 245
Query: 275 XXXXXXXXXXXXXXQEPYSISSIRLLDLHSNQLRGNIPHMSTNT----SYVDYSNNHF-T 329
P + S++ L L N+ G IP + + +D S NHF
Sbjct: 246 LKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 305
Query: 330 FIPADIGNFMSETEYFFAANNSLVGVIP-ESVCKGIYFQVLDLSNNNLSGTIPACLIAQS 388
+P G+ ++NN G +P +++ K +VLDLS N SG +P L S
Sbjct: 306 AVPPFFGSCSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 364
Query: 389 EXXXXXXXXXXXXXXXXXSDTIFPRNC-----GLQILDLGGNQLQGVVPKSLANCNMLQV 443
S I P C LQ L L N G +P +L+NC+ L
Sbjct: 365 ASLLTLDLSSNNF-----SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 419
Query: 444 LDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSG 503
L L N++S P LG+ S L+ L L N G I P+ + L+ + L N +G
Sbjct: 420 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI--PQELMYVKTLETLILDFNDLTG 477
Query: 504 RLSQKWLLTMEEMMVAETKSG-SELKHLRYVISSNQFYXXXXXXXXXXXXXMLLKVPNIF 562
E SG S +L +
Sbjct: 478 ----------------EIPSGLSNCTNLNW------------------------------ 491
Query: 563 TSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG 622
I S+N G IP+ +GR ++L L +S+N+ +G+IP+ G+ + + LDL+ N +G
Sbjct: 492 --ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 549
Query: 623 KIPA 626
IPA
Sbjct: 550 TIPA 553
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 87/357 (24%), Positives = 149/357 (41%), Gaps = 55/357 (15%)
Query: 297 IRLLDLHSNQLRGNIP-HMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGV 355
++ L + N++ G++ N ++D S+N+F+ +G+ S ++ + N L G
Sbjct: 177 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGD-CSALQHLDISGNKLSGD 235
Query: 356 IPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSEXXXXXXXXXXXXXXXXXSDTIFPRNC 415
++ ++L++S+N G IP +
Sbjct: 236 FSRAISTCTELKLLNISSNQFVGPIPPLPLKS---------------------------- 267
Query: 416 GLQILDLGGNQLQGVVPKSLAN-CNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNN 474
LQ L L N+ G +P L+ C+ L LDL NH P + G+ S L+ L L SNN
Sbjct: 268 -LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 326
Query: 475 FSGHISCPRNNV-SWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYV 533
FSG + P + + L+++DL+ N+FSG L + ++ +
Sbjct: 327 FSGEL--PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD------------- 371
Query: 534 ISSNQFYXXXXXXXXXXXXXMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSH 593
+SSN F + N + +N F G IP + L +L++S
Sbjct: 372 LSSNNF-------SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 424
Query: 594 NALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQXXXXXXXXXXXXXXXXXVGKIPT 650
N L+G+IPSS G+L ++ L L +N L G+IP + G+IP+
Sbjct: 425 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 481
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 24/113 (21%)
Query: 2 LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTL 61
LD+S L G P++I +P L L+L N + SG++
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI------------------------SGSI 669
Query: 62 PDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHK 114
PD +G+L L +++ G IP +M+ LT L +D S+N+ SG IP + +
Sbjct: 670 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQ 722
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 82/207 (39%), Gaps = 26/207 (12%)
Query: 2 LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPN--FPKNSSLRNLILSGTGFSG 59
L LS G P ++ +L LDL+ N L G++P F ++ + ++G +
Sbjct: 516 LKLSNNSFSGNIPAELGDCRSLIWLDLNTN-LFNGTIPAAMFKQSGKIAANFIAGKRYVY 574
Query: 60 TLPDSI-------GNL--------ENLTWVEVRR-CNFT-----GPIPPSMANLTQLFHM 98
D + GNL E L + R CN T G P+ N + +
Sbjct: 575 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 634
Query: 99 DFSSNHFSGHIPS-LHKSRNLKYLDLSFNNLSGGISSTFWEQXXXXXXXXXXXXXXXGSI 157
D S N SG+IP + L L+L N++SG I + G I
Sbjct: 635 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD-LRGLNILDLSSNKLDGRI 693
Query: 158 PRSLFLLPNLETLWLSNNQFENQLPEI 184
P+++ L L + LSNN +PE+
Sbjct: 694 PQAMSALTMLTEIDLSNNNLSGPIPEM 720
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 89/187 (47%), Gaps = 11/187 (5%)
Query: 2 LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLI---LSGTGFS 58
L ++ + G P+ + Q+ TL TLD S N L G+LP P SSL NL+ G S
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL-SGTLP--PSISSLPNLVGITFDGNRIS 162
Query: 59 GTLPDSIGNLENL-TWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKS-R 116
G +PDS G+ L T + + R TG IPP+ ANL F +D S N G L S +
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF-VDLSRNMLEGDASVLFGSDK 221
Query: 117 NLKYLDLSFNNLSGGISSTFWEQXXXXXXXXXXXXXXXGSIPRSLFLLPNLETLWLSNNQ 176
N + + L+ N+L+ + + G++P+ L L L +L +S N
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSK--NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279
Query: 177 FENQLPE 183
++P+
Sbjct: 280 LCGEIPQ 286
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 106/282 (37%), Gaps = 56/282 (19%)
Query: 331 IPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSEX 390
IP+ + N + N+LVG IP ++ K L +++ N+SG IP ++Q +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIKT 126
Query: 391 XXXXXXXXXXXXXXXXSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNH 450
L LD N L G +P S+++ L + N
Sbjct: 127 --------------------------LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160
Query: 451 ISDNFPCWLGNASSL-QVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKW 509
IS P G+ S L + + N +G I N++ L VDL+ N G S +
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN---LAFVDLSRNMLEGDASVLF 217
Query: 510 LLTMEEMMVAETKSGSELKHLRYVISSNQFYXXXXXXXXXXXXXMLLKVPNIFTSIDFSS 569
+ K+ + +S N +D +
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLGKVGLSKN------------------------LNGLDLRN 253
Query: 570 NNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIE 611
N G +P+ + + K L++LN+S N L G IP GNL++ +
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFD 294
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 5/140 (3%)
Query: 2 LDLSECGLQGKFP--EKILQVPTLETLDLSENQLLQGSLP-NFPKNSSLRNLILSGTGFS 58
LDLS L +P + +P L L + L G +P K + L L ++ T S
Sbjct: 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114
Query: 59 GTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHK--SR 116
G +PD + ++ L ++ +G +PPS+++L L + F N SG IP + S+
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174
Query: 117 NLKYLDLSFNNLSGGISSTF 136
+ +S N L+G I TF
Sbjct: 175 LFTSMTISRNRLTGKIPPTF 194
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 570 NNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP 625
NN GPIP + + L+ L ++H ++G+IP +K + +LD S N LSG +P
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 92/212 (43%), Gaps = 7/212 (3%)
Query: 417 LQILDLGG-NQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNF 475
L L +GG N L G +P ++A L L + + ++S P +L +L L N
Sbjct: 78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL 137
Query: 476 SGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSEL--KHLRYV 533
SG + P + S P L + N+ SG + + + ++ + T S + L K
Sbjct: 138 SGTL--PPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTF 194
Query: 534 ISSNQFYXXXXXXXXXXXXXMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSH 593
+ N + +L I + N+ + ++G K+L L++ +
Sbjct: 195 ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRN 253
Query: 594 NALTGSIPSSFGNLKQIESLDLSMNNLSGKIP 625
N + G++P LK + SL++S NNL G+IP
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 85/229 (37%), Gaps = 15/229 (6%)
Query: 157 IPRSLFLLPNLETLWLSN-NQFENQLPEIXXXXXXXXXXXXXXGNRLEGPVPISIIFELR 215
IP SL LP L L++ N +P N + G +P + +++
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-VSGAIP-DFLSQIK 125
Query: 216 NLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEXXXXXX 275
L TLD S N L+ + P I L N L G+ N+I G IP+
Sbjct: 126 TLVTLDFSYNA-----LSGTLPPSISSLPN---LVGITFDGNRISGAIPDSYGSFSKLFT 177
Query: 276 XXXXXXXXXXXXXQEPYSISSIRLLDLHSNQLRGNIPHM---STNTSYVDYSNNHFTFIP 332
++ ++ +DL N L G+ + NT + + N F
Sbjct: 178 SMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237
Query: 333 ADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIP 381
+G NN + G +P+ + + + L++S NNL G IP
Sbjct: 238 GKVG-LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 5/124 (4%)
Query: 1 TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
++ +S L GK P + L +DLS N L + F + + + + L+ +
Sbjct: 178 SMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236
Query: 61 LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKY 120
L +G +NL +++R G +P + L L ++ S N+ G IP + NL+
Sbjct: 237 L-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP---QGGNLQR 292
Query: 121 LDLS 124
D+S
Sbjct: 293 FDVS 296
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Query: 1 TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
LDLS C +Q + L TL L+ N + +L F SSL+ L+ T +
Sbjct: 56 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 115
Query: 61 LPDSIGNLENLTWVEVRRCNFTG-PIPPSMANLTQLFHMDFSSN 103
IG+L+ L + V +P +NLT L H+D SSN
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 580 MGRFKSLYALNMSHNALTG-SIPSSFGNLKQIESLDLSMNNL 620
+G K+L LN++HN + +P F NL +E LDLS N +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 45 SSLRNLILSGTGFSGT-LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSN 103
SSL L ++G F LPD L NLT++++ +C P + +L+ L ++ +SN
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504
Query: 104 H 104
Sbjct: 505 Q 505
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 410 IFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLV 469
IF L LDL QL+ + P + + + LQVL++ +N + +SLQ +
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIW 524
Query: 470 LQSNNFSGHISCPR 483
L +N + SCPR
Sbjct: 525 LHTNPWD--CSCPR 536
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Query: 1 TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
LDLS C +Q + L TL L+ N + +L F SSL+ L+ T +
Sbjct: 80 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 139
Query: 61 LPDSIGNLENLTWVEVRRCNFTG-PIPPSMANLTQLFHMDFSSN 103
IG+L+ L + V +P +NLT L H+D SSN
Sbjct: 140 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 45 SSLRNLILSGTGFSGT-LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSN 103
SSL L ++G F LPD L NLT++++ +C P + +L+ L ++ S N
Sbjct: 469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528
Query: 104 HFSGHIPSLHKSRN-LKYLDLSFNNL 128
+F +K N L+ LD S N++
Sbjct: 529 NFFSLDTFPYKCLNSLQVLDYSLNHI 554
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 580 MGRFKSLYALNMSHNALTG-SIPSSFGNLKQIESLDLSMNNL 620
+G K+L LN++HN + +P F NL +E LDLS N +
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 410 IFPRNCGLQILDLGGNQLQ-GVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVL 468
IF L++L + GN Q +P L LDL + P + SSLQVL
Sbjct: 464 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523
Query: 469 VLQSNNFSGHISCPRNNVSWPLLQIVDLASN 499
+ NNF + P ++ LQ++D + N
Sbjct: 524 NMSHNNFFSLDTFPYKCLNS--LQVLDYSLN 552
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 558 VPNIFTSI------DFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIE 611
+P+IFT + D S E P SL LNMSHN + L ++
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 545
Query: 612 SLDLSMNNL 620
LD S+N++
Sbjct: 546 VLDYSLNHI 554
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 1 TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
LDLS C +Q + L TL L+ N + +L F SSL+ L+ T +
Sbjct: 56 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 115
Query: 61 LPDSIGNLENLTWVEVRRCNF--TGPIPPSMANLTQLFHMDFSSN 103
IG+L+ L + V N + +P +NLT L H+D SSN
Sbjct: 116 ENFPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSN 159
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 45 SSLRNLILSGTGFSGT-LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSN 103
SSL L ++G F LPD L NLT++++ +C P + +L+ L ++ S N
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
Query: 104 HFSGHIPSLHKSRN-LKYLDLSFNNL 128
+F +K N L+ LD S N++
Sbjct: 505 NFFSLDTFPYKCLNSLQVLDYSLNHI 530
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 580 MGRFKSLYALNMSHNALTG-SIPSSFGNLKQIESLDLSMNNL 620
+G K+L LN++HN + +P F NL +E LDLS N +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 410 IFPRNCGLQILDLGGNQLQ-GVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVL 468
IF L++L + GN Q +P L LDL + P + SSLQVL
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499
Query: 469 VLQSNNFSGHISCPRNNVSWPLLQIVDLASN 499
+ NNF + P ++ LQ++D + N
Sbjct: 500 NMSHNNFFSLDTFPYKCLNS--LQVLDYSLN 528
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 558 VPNIFTSI------DFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIE 611
+P+IFT + D S E P SL LNMSHN + L ++
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 521
Query: 612 SLDLSMNNL 620
LD S+N++
Sbjct: 522 VLDYSLNHI 530
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 50/128 (39%), Gaps = 36/128 (28%)
Query: 18 LQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVR 77
+ +P+LE LDLS N G F G S +L ++++
Sbjct: 344 VDLPSLEFLDLSRN----------------------GLSFKGCCSQSDFGTTSLKYLDL- 380
Query: 78 RCNFTGPIPPS--MANLTQLFHMDFSSNHFS--GHIPSLHKSRNLKYLDLS-------FN 126
+F G I S L QL H+DF ++ RNL YLD+S FN
Sbjct: 381 --SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438
Query: 127 NLSGGISS 134
+ G+SS
Sbjct: 439 GIFNGLSS 446
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Query: 1 TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
LDLS C +Q + L TL L+ N + +L F SSL+ L+ T +
Sbjct: 56 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 115
Query: 61 LPDSIGNLENLTWVEVRRCNFTG-PIPPSMANLTQLFHMDFSSN 103
IG+L+ L + V +P +NLT L H+D SSN
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 580 MGRFKSLYALNMSHNALTG-SIPSSFGNLKQIESLDLSMNNL 620
+G K+L LN++HN + +P F NL +E LDLS N +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Query: 1 TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
LDLS C +Q + L TL L+ N + +L F SSL+ L+ T +
Sbjct: 58 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 117
Query: 61 LPDSIGNLENLTWVEVRRCNFTG-PIPPSMANLTQLFHMDFSSN 103
IG+L+ L + V +P +NLT L H+D SSN
Sbjct: 118 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 161
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 580 MGRFKSLYALNMSHNALTG-SIPSSFGNLKQIESLDLSMNNL 620
+G K+L LN++HN + +P F NL +E LDLS N +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Query: 1 TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
LDLS C +Q + L TL L+ N + +L F SSL+ L+ T +
Sbjct: 57 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 116
Query: 61 LPDSIGNLENLTWVEVRRCNFTG-PIPPSMANLTQLFHMDFSSN 103
IG+L+ L + V +P +NLT L H+D SSN
Sbjct: 117 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 160
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 580 MGRFKSLYALNMSHNALTG-SIPSSFGNLKQIESLDLSMNNL 620
+G K+L LN++HN + +P F NL +E LDLS N +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Query: 1 TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
LDLS C +Q + L TL L+ N + +L F SSL+ L+ T +
Sbjct: 57 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 116
Query: 61 LPDSIGNLENLTWVEVRRCNFTG-PIPPSMANLTQLFHMDFSSN 103
IG+L+ L + V +P +NLT L H+D SSN
Sbjct: 117 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 160
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 580 MGRFKSLYALNMSHNALTG-SIPSSFGNLKQIESLDLSMNNL 620
+G K+L LN++HN + +P F NL +E LDLS N +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Query: 1 TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT 60
LDLS C +Q + L TL L+ N + +L F SSL+ L+ T +
Sbjct: 58 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASL 117
Query: 61 LPDSIGNLENLTWVEVRRCNFTG-PIPPSMANLTQLFHMDFSSN 103
IG+L+ L + V +P +NLT L H+D SSN
Sbjct: 118 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 161
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 580 MGRFKSLYALNMSHNALTG-SIPSSFGNLKQIESLDLSMNNL 620
+G K+L LN++HN + +P F NL +E LDLS N +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 413 RNCG-LQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQ 471
R C LQ+L L +++ + + + L+ LDL +NH+S W G SSL+ L L
Sbjct: 47 RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106
Query: 472 SNNF 475
N +
Sbjct: 107 GNPY 110
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 14/74 (18%)
Query: 22 TLETLDLSENQLLQGSLPNFPKNSSLRNLILSGT-----GFSGTLPD-------SIGNLE 69
+LE LDLS+N L S F SSL+ L L G G + P+ IGN+E
Sbjct: 75 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134
Query: 70 NLTWVEVRRCNFTG 83
T+ E+RR +F G
Sbjct: 135 --TFSEIRRIDFAG 146
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 45 SSLRNLILSGTGFSGT-LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSN 103
SSL L ++G F LPD L NLT++++ +C P + +L+ L ++ S N
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
Query: 104 HFSGHIPSLHKSRN-LKYLDLSFNNL 128
+F +K N L+ LD S N++
Sbjct: 210 NFFSLDTFPYKCLNSLQVLDYSLNHI 235
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 558 VPNIFTSI------DFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIE 611
+P+IFT + D S E P SL LNMSHN + L ++
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 226
Query: 612 SLDLSMNNL 620
LD S+N++
Sbjct: 227 VLDYSLNHI 235
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 413 RNCG-LQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQ 471
R C LQ+L L +++ + + + L+ LDL +NH+S W G SSL+ L L
Sbjct: 73 RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 132
Query: 472 SNNF 475
N +
Sbjct: 133 GNPY 136
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 14/74 (18%)
Query: 22 TLETLDLSENQLLQGSLPNFPKNSSLRNLILSGT-----GFSGTLPD-------SIGNLE 69
+LE LDLS+N L S F SSL+ L L G G + P+ IGN+E
Sbjct: 101 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 160
Query: 70 NLTWVEVRRCNFTG 83
T+ E+RR +F G
Sbjct: 161 --TFSEIRRIDFAG 172
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Query: 2 LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTL 61
LDLS C ++ + + L L L+ N + S +F +SL NL+ T +
Sbjct: 61 LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 120
Query: 62 PDSIGNLENLTWVEVRRCNF--TGPIPPSMANLTQLFHMDFSSNH 104
IG L L + V NF + +P +NLT L H+D S N+
Sbjct: 121 SFPIGQLITLKKLNVAH-NFIHSCKLPAYFSNLTNLVHVDLSYNY 164
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 558 VPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSM 617
+P T + N F +P+E+ +K L +++S+N ++ SF N+ Q+ +L LS
Sbjct: 29 IPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87
Query: 618 NNL 620
N L
Sbjct: 88 NRL 90
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 420 LDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNF 475
L L GNQ +VPK L+N L ++DL NN IS N + L L+L N
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Query: 2 LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTL 61
LDLS C ++ + + L L L+ N + S +F +SL NL+ T +
Sbjct: 56 LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 115
Query: 62 PDSIGNLENLTWVEVRRCNF--TGPIPPSMANLTQLFHMDFSSNH 104
IG L L + V NF + +P +NLT L H+D S N+
Sbjct: 116 SFPIGQLITLKKLNVAH-NFIHSCKLPAYFSNLTNLVHVDLSYNY 159
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 409 TIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISD 453
T+ R L L L NQ++ +VP LA LQ L L NHISD
Sbjct: 148 TVLSRLTKLDTLSLEDNQIRRIVP--LARLTKLQNLYLSKNHISD 190
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 409 TIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISD 453
T+ R L L L NQ+ +VP LA LQ L L NHISD
Sbjct: 147 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 189
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 13/122 (10%)
Query: 12 KFPEKILQVPTLETLDLSENQL--LQGSLPNFPKNSSLRNLILSGTGFSGTLP------D 63
+ P+ Q LETL L+ N L L S+ + + LR L + LP D
Sbjct: 118 ELPDTXQQFAGLETLTLARNPLRALPASIASL---NRLRELSIRACPELTELPEPLASTD 174
Query: 64 SIGNLENLTWVEVRRCNFTG--PIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYL 121
+ G + L ++ R +TG +P S+ANL L + ++ S P++H L+ L
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEEL 234
Query: 122 DL 123
DL
Sbjct: 235 DL 236
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 34/76 (44%)
Query: 17 ILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEV 76
I +P LE LDL L+ P F + L+ LIL TLP I L L +++
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284
Query: 77 RRCNFTGPIPPSMANL 92
R C +P +A L
Sbjct: 285 RGCVNLSRLPSLIAQL 300
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 409 TIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISD-NFPCWLGNASSLQV 467
T+ R L L L NQ+ +VP LA LQ L L NHISD C L N L++
Sbjct: 145 TVLSRLTKLDTLSLEDNQISDIVP--LACLTKLQNLYLSKNHISDLRALCGLKNLDVLEL 202
Query: 468 L 468
Sbjct: 203 F 203
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 409 TIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISD 453
T+ R L L L NQ+ +VP LA LQ L L NHISD
Sbjct: 150 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 417 LQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFS 476
L+ LDL N L + ++ L+VL L NNHI + + LQ L L N S
Sbjct: 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149
Query: 477 GH-ISCPRNNVSWPLLQIVDLASNKF 501
+ ++ P L ++DL+SNK
Sbjct: 150 RFPVELIKDGNKLPKLMLLDLSSNKL 175
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 409 TIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISD 453
T+ R L L L NQ+ +VP LA LQ L L NHISD
Sbjct: 170 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 212
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 409 TIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISD 453
T+ R L L L NQ+ +VP LA LQ L L NHISD
Sbjct: 150 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 85/209 (40%), Gaps = 48/209 (22%)
Query: 63 DSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLD 122
D + NL NL +E+ + +++ LT L ++FSSN + P L L+ LD
Sbjct: 123 DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLD 179
Query: 123 LSFNNLSGGISSTFWEQXXXXXXXXXXXXXXXGSIPRSLFLLPNLETLWLSNNQFENQLP 182
+S N +S IS L L NLE+L +NNQ + P
Sbjct: 180 ISSNKVSD-ISV--------------------------LAKLTNLESLIATNNQISDITP 212
Query: 183 EIXXXXXXXXXXXXXXGNRLEGPVPISIIFELRNLYTLDLSSN------------KFSRL 230
GN+L+ I + L NL LDL++N K + L
Sbjct: 213 ---LGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL 266
Query: 231 RLASSKPRVIPILKNQSQLSGLDISNNQI 259
+L +++ I L + L+ L+++ NQ+
Sbjct: 267 KLGANQISNISPLAGLTALTNLELNENQL 295
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 409 TIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISD 453
T+ R L L L NQ+ +VP LA LQ L L NHISD
Sbjct: 148 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 190
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 409 TIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISD 453
T+ R L L L NQ+ +VP LA LQ L L NHISD
Sbjct: 168 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 210
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 409 TIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISD 453
T+ R L L L NQ+ +VP LA LQ L L NHISD
Sbjct: 145 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 187
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 409 TIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISD 453
T+ R L L L NQ+ +VP LA LQ L L NHISD
Sbjct: 168 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 210
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 409 TIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISD 453
T+ R L L L NQ+ +VP LA LQ L L NHISD
Sbjct: 168 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 210
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 84/209 (40%), Gaps = 48/209 (22%)
Query: 63 DSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLD 122
D + NL NL +E+ + +++ LT L + FSSN + P L L+ LD
Sbjct: 123 DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP-LANLTTLERLD 179
Query: 123 LSFNNLSGGISSTFWEQXXXXXXXXXXXXXXXGSIPRSLFLLPNLETLWLSNNQFENQLP 182
+S N +S IS L L NLE+L +NNQ + P
Sbjct: 180 ISSNKVSD-ISV--------------------------LAKLTNLESLIATNNQISDITP 212
Query: 183 EIXXXXXXXXXXXXXXGNRLEGPVPISIIFELRNLYTLDLSSN------------KFSRL 230
GN+L+ I + L NL LDL++N K + L
Sbjct: 213 ---LGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL 266
Query: 231 RLASSKPRVIPILKNQSQLSGLDISNNQI 259
+L +++ I L + L+ L+++ NQ+
Sbjct: 267 KLGANQISNISPLAGLTALTNLELNENQL 295
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 84/209 (40%), Gaps = 48/209 (22%)
Query: 63 DSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLD 122
D + NL NL +E+ + +++ LT L + FSSN + P L L+ LD
Sbjct: 123 DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP-LANLTTLERLD 179
Query: 123 LSFNNLSGGISSTFWEQXXXXXXXXXXXXXXXGSIPRSLFLLPNLETLWLSNNQFENQLP 182
+S N +S IS L L NLE+L +NNQ + P
Sbjct: 180 ISSNKVSD-ISV--------------------------LAKLTNLESLIATNNQISDITP 212
Query: 183 EIXXXXXXXXXXXXXXGNRLEGPVPISIIFELRNLYTLDLSSN------------KFSRL 230
GN+L+ I + L NL LDL++N K + L
Sbjct: 213 ---LGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL 266
Query: 231 RLASSKPRVIPILKNQSQLSGLDISNNQI 259
+L +++ I L + L+ L+++ NQ+
Sbjct: 267 KLGANQISNISPLAGLTALTNLELNENQL 295
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 295 SSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPA-DIGNFMSE-TEYFFAANNSL 352
+S+ +L + +NQL +P + + +D S N +PA + N SE TE FF +
Sbjct: 160 TSLEVLSVRNNQLTF-LPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENR 218
Query: 353 VGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQS 388
+ IPE++ + L +N LS I L Q+
Sbjct: 219 ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 413 RNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQS 472
R L L LG NQ++ + SL+ L+ L L NN +S P L + LQV+ L +
Sbjct: 215 RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHT 273
Query: 473 NNFS 476
NN +
Sbjct: 274 NNIT 277
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Query: 20 VPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLT-----W- 73
+PTL+ LDLS N LL N P+ L NL L + L+NLT W
Sbjct: 294 IPTLKVLDLSHNHLLHVE-RNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWD 352
Query: 74 VEVRRCNFTGPIPPSMANLTQLFHMDFSSNH 104
R F P++ + Q +D+ H
Sbjct: 353 CNSLRALFRNVARPAVDDADQHCKIDYQLEH 383
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 559 PNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSF--GNLKQIESLDLS 616
P+ FT ++F+ N F + + K L L + N L + N+ +E+LD+S
Sbjct: 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411
Query: 617 MNNL 620
+N+L
Sbjct: 412 LNSL 415
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 564 SIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS 621
S+D S+N ++ R +L AL ++ N + SF +L +E LDLS N LS
Sbjct: 30 SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Query: 20 VPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLT-----W- 73
+PTL+ LDLS N LL N P+ L NL L + L+NLT W
Sbjct: 300 IPTLKVLDLSHNHLLHVE-RNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWD 358
Query: 74 VEVRRCNFTGPIPPSMANLTQLFHMDFSSNH 104
R F P++ + Q +D+ H
Sbjct: 359 CNSLRALFRNVARPAVDDADQHCKIDYQLEH 389
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 564 SIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS 621
S+D S+N ++ R +L AL ++ N + SF +L +E LDLS N LS
Sbjct: 56 SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 167 LETLWLSNNQFENQLPEIXXXXXXXXXXXXXXGNRLEGPVPISIIFELRNLYTLDLSSNK 226
L+ L LS N F+ QL +I GN + + + + +L NL TLDLS N
Sbjct: 300 LKKLVLSVNHFD-QLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHND 358
Query: 227 FSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPG 261
S + LKN S L L++S+N+ G
Sbjct: 359 IEASDCCSLQ------LKNLSHLQTLNLSHNEPLG 387
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 564 SIDFSSNNFEGP--IPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS 621
++D S N+ E ++ L LN+SHN G +F Q+E LDL+ L
Sbjct: 351 TLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLH 410
Query: 622 GKIP 625
P
Sbjct: 411 INAP 414
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 570 NNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSF-GNLKQIESLDLSMNNL 620
N EG +P G L +LN+++N +T IP++F G +Q+E+L + N L
Sbjct: 340 NQLEGKLPA-FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKL 389
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,067,494
Number of Sequences: 62578
Number of extensions: 575167
Number of successful extensions: 2010
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 1300
Number of HSP's gapped (non-prelim): 521
length of query: 650
length of database: 14,973,337
effective HSP length: 105
effective length of query: 545
effective length of database: 8,402,647
effective search space: 4579442615
effective search space used: 4579442615
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)