Query 043523
Match_columns 650
No_of_seqs 273 out of 3319
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 05:55:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043523.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043523hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 5.1E-53 1.1E-57 480.1 39.7 519 20-650 68-589 (968)
2 PLN00113 leucine-rich repeat r 100.0 3.1E-50 6.6E-55 457.4 38.0 496 44-650 68-565 (968)
3 KOG4194 Membrane glycoprotein 100.0 1E-38 2.3E-43 306.2 6.2 406 23-515 54-465 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.1E-36 2.5E-41 292.2 8.9 395 47-619 54-450 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 3.9E-39 8.5E-44 295.6 -12.5 259 3-307 51-309 (565)
6 KOG0618 Serine/threonine phosp 100.0 2.1E-35 4.6E-40 298.8 -5.3 146 1-151 2-147 (1081)
7 KOG0472 Leucine-rich repeat pr 100.0 3.3E-36 7.3E-41 276.4 -15.1 462 2-502 73-541 (565)
8 KOG0618 Serine/threonine phosp 100.0 2.5E-33 5.4E-38 283.9 -2.7 478 2-521 26-507 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 2.3E-31 5E-36 257.9 -2.6 181 356-640 214-394 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 1.4E-30 3E-35 252.6 -5.0 363 20-474 6-373 (1255)
11 KOG4237 Extracellular matrix p 99.9 1E-27 2.2E-32 220.5 1.6 440 99-642 52-498 (498)
12 PLN03210 Resistant to P. syrin 99.9 9.5E-22 2.1E-26 223.9 27.4 347 12-375 549-904 (1153)
13 PLN03210 Resistant to P. syrin 99.9 1.3E-21 2.8E-26 222.8 26.1 159 37-201 550-715 (1153)
14 KOG4237 Extracellular matrix p 99.9 2.1E-23 4.4E-28 192.4 -0.9 293 320-644 50-358 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 1.8E-19 3.9E-24 189.9 17.8 265 275-630 203-467 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 3.1E-19 6.7E-24 188.2 16.0 263 249-604 203-465 (788)
17 PRK15370 E3 ubiquitin-protein 99.7 5.2E-18 1.1E-22 180.3 12.1 180 275-476 180-359 (754)
18 PRK15370 E3 ubiquitin-protein 99.7 1.4E-17 2.9E-22 177.2 13.3 159 297-476 180-338 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 2E-18 4.2E-23 171.6 2.5 260 339-644 22-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 1E-17 2.2E-22 166.5 1.1 260 345-647 3-293 (319)
21 KOG0617 Ras suppressor protein 99.6 1.1E-16 2.3E-21 131.0 -2.6 163 40-208 28-190 (264)
22 KOG0617 Ras suppressor protein 99.5 1.6E-16 3.5E-21 129.9 -3.3 162 19-186 31-194 (264)
23 KOG3207 Beta-tubulin folding c 99.2 3.5E-12 7.5E-17 120.6 2.8 209 390-646 121-340 (505)
24 KOG3207 Beta-tubulin folding c 99.2 2.1E-12 4.7E-17 122.0 0.4 212 362-622 119-340 (505)
25 KOG1909 Ran GTPase-activating 99.2 2.2E-12 4.8E-17 118.5 0.2 88 415-502 157-254 (382)
26 KOG1909 Ran GTPase-activating 99.2 5.6E-13 1.2E-17 122.4 -3.7 113 390-502 157-283 (382)
27 PF14580 LRR_9: Leucine-rich r 99.2 2.2E-11 4.8E-16 105.3 6.0 108 391-504 20-128 (175)
28 PF14580 LRR_9: Leucine-rich r 99.1 3.5E-11 7.6E-16 104.1 4.7 107 18-129 16-126 (175)
29 KOG1259 Nischarin, modulator o 99.1 3.2E-11 7E-16 108.3 1.4 59 438-501 283-341 (490)
30 COG4886 Leucine-rich repeat (L 99.1 2.1E-10 4.5E-15 117.3 7.3 122 368-499 97-219 (394)
31 KOG0532 Leucine-rich repeat (L 99.0 8.6E-12 1.9E-16 121.8 -4.7 167 3-178 81-247 (722)
32 PF13855 LRR_8: Leucine rich r 99.0 2.7E-10 5.8E-15 80.9 2.9 61 584-644 1-61 (61)
33 KOG0532 Leucine-rich repeat (L 99.0 5.5E-11 1.2E-15 116.3 -1.3 166 2-176 103-271 (722)
34 COG4886 Leucine-rich repeat (L 98.9 1.2E-09 2.6E-14 111.6 6.9 194 25-229 97-291 (394)
35 PF13855 LRR_8: Leucine rich r 98.9 1.1E-09 2.5E-14 77.6 4.0 59 416-474 2-60 (61)
36 KOG1259 Nischarin, modulator o 98.9 3.8E-10 8.2E-15 101.6 1.0 229 16-266 177-417 (490)
37 KOG4658 Apoptotic ATPase [Sign 98.9 1.8E-09 4E-14 117.6 5.9 128 21-151 523-652 (889)
38 PLN03150 hypothetical protein; 98.9 3.7E-09 7.9E-14 113.0 7.4 90 561-650 419-508 (623)
39 KOG2120 SCF ubiquitin ligase, 98.8 1.4E-10 3E-15 104.3 -4.4 226 24-257 139-373 (419)
40 KOG0531 Protein phosphatase 1, 98.8 1.7E-09 3.8E-14 110.4 1.1 84 562-648 234-321 (414)
41 PLN03150 hypothetical protein; 98.8 1.9E-08 4E-13 107.6 8.5 108 22-129 419-528 (623)
42 KOG4658 Apoptotic ATPase [Sign 98.7 5.5E-08 1.2E-12 106.3 10.7 277 288-597 516-807 (889)
43 KOG2120 SCF ubiquitin ligase, 98.7 4.5E-10 9.7E-15 101.1 -4.7 198 391-635 186-390 (419)
44 KOG0531 Protein phosphatase 1, 98.7 3.3E-09 7.2E-14 108.3 0.1 76 565-645 213-290 (414)
45 KOG2982 Uncharacterized conser 98.6 1.7E-08 3.7E-13 91.1 2.2 83 558-640 197-287 (418)
46 KOG4341 F-box protein containi 98.6 1.8E-09 4E-14 102.0 -4.5 180 413-637 266-457 (483)
47 KOG4341 F-box protein containi 98.6 3.6E-09 7.8E-14 100.0 -3.6 110 142-258 139-253 (483)
48 KOG1859 Leucine-rich repeat pr 98.5 2.1E-09 4.5E-14 108.4 -8.1 84 558-644 207-291 (1096)
49 KOG2982 Uncharacterized conser 98.4 2.7E-08 5.9E-13 89.9 -1.5 185 68-260 70-262 (418)
50 KOG1859 Leucine-rich repeat pr 98.4 4E-08 8.6E-13 99.5 -0.9 122 391-521 165-286 (1096)
51 KOG1644 U2-associated snRNP A' 98.3 1.6E-06 3.5E-11 74.2 6.6 105 22-128 43-152 (233)
52 COG5238 RNA1 Ran GTPase-activa 98.2 2.3E-07 4.9E-12 82.9 -0.6 103 413-515 155-268 (388)
53 KOG1644 U2-associated snRNP A' 98.1 5.4E-06 1.2E-10 71.1 5.3 109 391-502 43-153 (233)
54 KOG4579 Leucine-rich repeat (L 98.0 1.3E-07 2.7E-12 75.4 -5.5 88 558-648 75-162 (177)
55 PF12799 LRR_4: Leucine Rich r 98.0 9.3E-06 2E-10 52.3 3.9 36 440-476 2-37 (44)
56 PRK15386 type III secretion pr 98.0 3.5E-05 7.5E-10 75.6 9.2 71 391-475 53-124 (426)
57 PF12799 LRR_4: Leucine Rich r 98.0 1.1E-05 2.3E-10 52.0 3.6 38 415-453 1-38 (44)
58 COG5238 RNA1 Ran GTPase-activa 97.9 9.7E-06 2.1E-10 72.8 3.1 224 43-283 28-282 (388)
59 KOG1947 Leucine rich repeat pr 97.9 2.1E-06 4.6E-11 90.8 -1.4 86 411-496 239-328 (482)
60 PF13306 LRR_5: Leucine rich r 97.8 8.8E-05 1.9E-09 62.2 8.0 88 406-498 3-90 (129)
61 KOG3665 ZYG-1-like serine/thre 97.8 6E-06 1.3E-10 88.2 0.6 137 365-503 123-264 (699)
62 KOG3665 ZYG-1-like serine/thre 97.8 5.3E-06 1.2E-10 88.6 -0.0 83 19-103 146-230 (699)
63 PF13306 LRR_5: Leucine rich r 97.8 9E-05 1.9E-09 62.1 7.5 126 12-143 3-128 (129)
64 KOG4579 Leucine-rich repeat (L 97.7 1.8E-06 3.8E-11 69.0 -3.1 60 439-501 53-112 (177)
65 PRK15386 type III secretion pr 97.7 0.0002 4.3E-09 70.4 10.2 132 294-449 51-187 (426)
66 KOG2739 Leucine-rich acidic nu 97.4 0.00012 2.5E-09 66.1 2.7 107 43-151 41-153 (260)
67 KOG1947 Leucine rich repeat pr 97.3 3.1E-05 6.8E-10 81.9 -1.8 224 391-645 189-440 (482)
68 KOG2739 Leucine-rich acidic nu 97.3 0.00016 3.5E-09 65.2 2.5 112 61-174 35-152 (260)
69 KOG2123 Uncharacterized conser 97.1 2.2E-05 4.8E-10 70.8 -4.1 100 391-495 20-123 (388)
70 KOG4308 LRR-containing protein 96.3 3.8E-05 8.2E-10 78.5 -10.5 60 586-645 235-303 (478)
71 KOG2123 Uncharacterized conser 95.9 0.00047 1E-08 62.5 -4.0 78 565-646 24-102 (388)
72 KOG3864 Uncharacterized conser 95.0 0.0094 2E-07 51.8 0.8 85 416-501 102-188 (221)
73 PF00560 LRR_1: Leucine Rich R 94.9 0.0093 2E-07 31.7 0.5 12 610-621 2-13 (22)
74 PF00560 LRR_1: Leucine Rich R 94.8 0.011 2.4E-07 31.4 0.6 21 585-606 1-21 (22)
75 KOG4308 LRR-containing protein 94.8 0.00036 7.7E-09 71.5 -9.7 61 416-476 145-217 (478)
76 PF13504 LRR_7: Leucine rich r 94.5 0.021 4.5E-07 28.0 1.0 16 633-649 2-17 (17)
77 KOG3864 Uncharacterized conser 93.8 0.0083 1.8E-07 52.2 -2.0 85 440-524 102-186 (221)
78 smart00369 LRR_TYP Leucine-ric 92.9 0.085 1.8E-06 29.3 1.9 23 607-629 1-23 (26)
79 smart00370 LRR Leucine-rich re 92.9 0.085 1.8E-06 29.3 1.9 23 607-629 1-23 (26)
80 PF13516 LRR_6: Leucine Rich r 92.0 0.073 1.6E-06 28.9 0.8 15 439-453 2-16 (24)
81 KOG0473 Leucine-rich repeat pr 91.0 0.0039 8.4E-08 55.2 -7.4 91 37-129 34-124 (326)
82 KOG0473 Leucine-rich repeat pr 90.5 0.0047 1E-07 54.7 -7.4 94 10-106 31-124 (326)
83 smart00369 LRR_TYP Leucine-ric 90.2 0.27 5.8E-06 27.2 2.0 21 439-459 2-22 (26)
84 smart00370 LRR Leucine-rich re 90.2 0.27 5.8E-06 27.2 2.0 21 439-459 2-22 (26)
85 PF13516 LRR_6: Leucine Rich r 89.9 0.099 2.2E-06 28.4 0.1 22 414-435 1-22 (24)
86 smart00364 LRR_BAC Leucine-ric 89.7 0.23 4.9E-06 27.3 1.4 18 632-650 2-19 (26)
87 KOG4242 Predicted myosin-I-bin 81.8 8.5 0.00018 38.8 8.6 60 417-476 415-481 (553)
88 smart00368 LRR_RI Leucine rich 80.3 1.2 2.5E-05 25.3 1.4 16 439-454 2-17 (28)
89 smart00365 LRR_SD22 Leucine-ri 77.6 2.1 4.5E-05 23.7 1.8 15 439-453 2-16 (26)
90 smart00367 LRR_CC Leucine-rich 71.4 2.7 5.8E-05 23.2 1.3 11 439-449 2-12 (26)
91 TIGR00864 PCC polycystin catio 65.3 4.2 9E-05 50.4 2.4 47 469-517 1-47 (2740)
92 KOG3763 mRNA export factor TAP 63.8 2.7 5.8E-05 43.1 0.4 34 391-425 219-254 (585)
93 KOG4242 Predicted myosin-I-bin 57.6 53 0.0012 33.4 8.0 37 584-620 440-480 (553)
94 KOG3763 mRNA export factor TAP 44.5 8.9 0.00019 39.5 0.6 17 213-229 216-232 (585)
95 PF07723 LRR_2: Leucine Rich R 31.0 15 0.00033 20.3 -0.1 11 465-475 2-12 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.1e-53 Score=480.14 Aligned_cols=519 Identities=32% Similarity=0.493 Sum_probs=414.5
Q ss_pred CCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCC-CCCCCcEEEcCCCccccCCCcCccCCCCCcEE
Q 043523 20 VPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIG-NLENLTWVEVRRCNFTGPIPPSMANLTQLFHM 98 (650)
Q Consensus 20 ~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~-~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L 98 (650)
..+++.|+++++.+.......|..+++|++|+|++|.+.+.+|..+. .+.+|++|++++|.+++..|. +.+++|++|
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L 145 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL 145 (968)
T ss_pred CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence 35788999999988776677888899999999999998877776654 899999999999998876664 468899999
Q ss_pred EccCCccccc-CCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCcC
Q 043523 99 DFSSNHFSGH-IPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQF 177 (650)
Q Consensus 99 ~l~~~~i~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 177 (650)
++++|.+... +..+..+++|++|++++|.+.+.++.. +.++++|++|++++|.+....|..+..+++|+.|++++|.+
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence 9999988754 446788899999999999888777766 78899999999999998888888999999999999999988
Q ss_pred CCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCC-CCCCCCCcEEEccC
Q 043523 178 ENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPI-LKNQSQLSGLDISN 256 (650)
Q Consensus 178 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~-l~~~~~L~~L~l~~ 256 (650)
....+... ..+++|++|++++|.+.+.+|..+ ..+++|+.|++++|.+. +.++. +..+++|++|++++
T Consensus 225 ~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~---------~~~p~~l~~l~~L~~L~Ls~ 293 (968)
T PLN00113 225 SGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLS---------GPIPPSIFSLQKLISLDLSD 293 (968)
T ss_pred CCcCChhH-hcCCCCCEEECcCceeccccChhH-hCCCCCCEEECcCCeee---------ccCchhHhhccCcCEEECcC
Confidence 76555433 357889999999999887777765 88999999999999876 22332 67788999999999
Q ss_pred CcCCCCCChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhh
Q 043523 257 NQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIG 336 (650)
Q Consensus 257 ~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~ 336 (650)
|.+.+..|.++.... +|+.|++++| .+.+..+. . +
T Consensus 294 n~l~~~~p~~~~~l~--~L~~L~l~~n----------------------~~~~~~~~--------------------~-~ 328 (968)
T PLN00113 294 NSLSGEIPELVIQLQ--NLEILHLFSN----------------------NFTGKIPV--------------------A-L 328 (968)
T ss_pred CeeccCCChhHcCCC--CCcEEECCCC----------------------ccCCcCCh--------------------h-H
Confidence 998878887664332 2444444433 33222211 1 1
Q ss_pred hccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCC
Q 043523 337 NFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCG 416 (650)
Q Consensus 337 ~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 416 (650)
..+++|+.+++++|.+.+..|..+..+.+|+.|++++|.+.+..|..+.... +|+.|++++|.+.+.++.. +..+++
T Consensus 329 ~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~--~L~~L~l~~n~l~~~~p~~-~~~~~~ 405 (968)
T PLN00113 329 TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG--NLFKLILFSNSLEGEIPKS-LGACRS 405 (968)
T ss_pred hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcC--CCCEEECcCCEecccCCHH-HhCCCC
Confidence 2255666666666666666677777777788888888877777776665543 7888888888877666654 778888
Q ss_pred ccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeC
Q 043523 417 LQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDL 496 (650)
Q Consensus 417 L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l 496 (650)
|+.|++++|.+++..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++.+.. +. ....++|+.|++
T Consensus 406 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~--p~-~~~~~~L~~L~l 482 (968)
T PLN00113 406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGL--PD-SFGSKRLENLDL 482 (968)
T ss_pred CCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeec--Cc-ccccccceEEEC
Confidence 999999999988888888888999999999999988888888888999999999999887543 33 334578999999
Q ss_pred CCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCC
Q 043523 497 ASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPI 576 (650)
Q Consensus 497 ~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~ 576 (650)
++|.+.+..+..+ ..++.|+.|++++|.+.+..
T Consensus 483 s~n~l~~~~~~~~-----------------------------------------------~~l~~L~~L~Ls~N~l~~~~ 515 (968)
T PLN00113 483 SRNQFSGAVPRKL-----------------------------------------------GSLSELMQLKLSENKLSGEI 515 (968)
T ss_pred cCCccCCccChhh-----------------------------------------------hhhhccCEEECcCCcceeeC
Confidence 9998876554322 24667889999999999888
Q ss_pred CccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCcCcccCCC
Q 043523 577 PEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPT 650 (650)
Q Consensus 577 ~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~ 650 (650)
++.+..+++|++|+|++|.+++..|..|+.+++|+.|++++|++++..|..+.++++|+.+++++|++++++|+
T Consensus 516 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 516 PDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred ChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999985
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.1e-50 Score=457.43 Aligned_cols=496 Identities=35% Similarity=0.507 Sum_probs=427.5
Q ss_pred CCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCc-cCCCCCcEEEccCCcccccCCccccCCCcCEEe
Q 043523 44 NSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSM-ANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLD 122 (650)
Q Consensus 44 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l-~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~ 122 (650)
..+++.|+++++.+.+..+..+..+++|++|++++|++.+.+|..+ .++++|++|++++|.+.+..+. ..+++|++|+
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~ 146 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNLETLD 146 (968)
T ss_pred CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-cccCCCCEEE
Confidence 3579999999999998889999999999999999999987777754 4999999999999999765553 4579999999
Q ss_pred CCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhcCCCCccEEEccCCcC
Q 043523 123 LSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRL 202 (650)
Q Consensus 123 l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 202 (650)
+++|.+.+.++.. ++.+++|++|++++|.+....|..+..+++|++|++++|.+....+... ..+.+|+.|++++|.+
T Consensus 147 Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 147 LSNNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL-GQMKSLKWIYLGYNNL 224 (968)
T ss_pred CcCCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHH-cCcCCccEEECcCCcc
Confidence 9999998777777 8999999999999999988889999999999999999999876655433 3578999999999999
Q ss_pred CCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCC-CCCCCCCcEEEccCCcCCCCCChhHHhhcCcccceeeec
Q 043523 203 EGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPI-LKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLS 281 (650)
Q Consensus 203 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~-l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~ 281 (650)
.+.+|..+ ..+++|+.|++++|.+. +.++. +..+++|+.|++++|.+.+..|.++...
T Consensus 225 ~~~~p~~l-~~l~~L~~L~L~~n~l~---------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l----------- 283 (968)
T PLN00113 225 SGEIPYEI-GGLTSLNHLDLVYNNLT---------GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL----------- 283 (968)
T ss_pred CCcCChhH-hcCCCCCEEECcCceec---------cccChhHhCCCCCCEEECcCCeeeccCchhHhhc-----------
Confidence 98888776 89999999999999876 23333 7889999999999999987777766543
Q ss_pred cccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCccccccccccc
Q 043523 282 HNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVC 361 (650)
Q Consensus 282 ~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~ 361 (650)
++|+.|++++|.+.+..+ .. +..+++|+.+++++|.+.+..|..+.
T Consensus 284 -------------~~L~~L~Ls~n~l~~~~p--------------------~~-~~~l~~L~~L~l~~n~~~~~~~~~~~ 329 (968)
T PLN00113 284 -------------QKLISLDLSDNSLSGEIP--------------------EL-VIQLQNLEILHLFSNNFTGKIPVALT 329 (968)
T ss_pred -------------cCcCEEECcCCeeccCCC--------------------hh-HcCCCCCcEEECCCCccCCcCChhHh
Confidence 234444444443332222 22 22377888899999999989999999
Q ss_pred CCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCC
Q 043523 362 KGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNML 441 (650)
Q Consensus 362 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L 441 (650)
.+++|+.|++++|.+.+.+|..+.... +|+.|++++|.+.+.++.. +..+++|+.|++++|.+.+..|..+..+++|
T Consensus 330 ~l~~L~~L~L~~n~l~~~~p~~l~~~~--~L~~L~Ls~n~l~~~~p~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L 406 (968)
T PLN00113 330 SLPRLQVLQLWSNKFSGEIPKNLGKHN--NLTVLDLSTNNLTGEIPEG-LCSSGNLFKLILFSNSLEGEIPKSLGACRSL 406 (968)
T ss_pred cCCCCCEEECcCCCCcCcCChHHhCCC--CCcEEECCCCeeEeeCChh-HhCcCCCCEEECcCCEecccCCHHHhCCCCC
Confidence 999999999999999988888776654 9999999999998777665 7788999999999999998999999999999
Q ss_pred CEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhc
Q 043523 442 QVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAET 521 (650)
Q Consensus 442 ~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~ 521 (650)
+.|++++|++.+..|..+..++.|+.|++++|.+.+.. +..+..+++|+.|++++|.+.+..+..+
T Consensus 407 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~n~~~~~~p~~~------------ 472 (968)
T PLN00113 407 RRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI--NSRKWDMPSLQMLSLARNKFFGGLPDSF------------ 472 (968)
T ss_pred CEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCcc--ChhhccCCCCcEEECcCceeeeecCccc------------
Confidence 99999999999888999999999999999999998654 5566788999999999998865444321
Q ss_pred ccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCC
Q 043523 522 KSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIP 601 (650)
Q Consensus 522 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~ 601 (650)
..+.|+.|++++|.+.+..+..+..+++|+.|++++|++++..|
T Consensus 473 ------------------------------------~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 516 (968)
T PLN00113 473 ------------------------------------GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP 516 (968)
T ss_pred ------------------------------------ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCC
Confidence 24678999999999999999999999999999999999999999
Q ss_pred cCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCcCcccCCC
Q 043523 602 SSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPT 650 (650)
Q Consensus 602 ~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~ 650 (650)
+.+.++++|++|++++|.+++..|..+..+++|+.|++++|++++.+|+
T Consensus 517 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 565 (968)
T PLN00113 517 DELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK 565 (968)
T ss_pred hHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCCh
Confidence 9999999999999999999999999999999999999999999999984
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1e-38 Score=306.18 Aligned_cols=406 Identities=24% Similarity=0.235 Sum_probs=258.6
Q ss_pred CCEEeCCCCCCCCCCCCCCCCC--CcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEc
Q 043523 23 LETLDLSENQLLQGSLPNFPKN--SSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDF 100 (650)
Q Consensus 23 L~~L~ls~~~i~~~~~~~~~~l--~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l 100 (650)
-+.||.++..+.......+.++ ..-+.|++++|++.+..+..|.++++|+.+++.+|.++ ..|....-..+|+.|+|
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL 132 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee
Confidence 3567888777754433344332 34566888888888777777888888888888888887 66776666677888888
Q ss_pred cCCcccccCC-ccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCcCCC
Q 043523 101 SSNHFSGHIP-SLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFEN 179 (650)
Q Consensus 101 ~~~~i~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 179 (650)
.+|.|..+.. .+..++.|++||++.|.++. ++...|..-.++++|+++.|.|+....+.|..+.+|..|.+++|+++
T Consensus 133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~-i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit- 210 (873)
T KOG4194|consen 133 RHNLISSVTSEELSALPALRSLDLSRNLISE-IPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT- 210 (873)
T ss_pred eccccccccHHHHHhHhhhhhhhhhhchhhc-ccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-
Confidence 8888876543 56667888888888888873 44333566677888888888888888888888888888888888887
Q ss_pred CCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccCCcC
Q 043523 180 QLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQI 259 (650)
Q Consensus 180 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~i 259 (650)
.+|...+..++.|+.|++..|++. .+....|.++++|+.|.+..|++..++.+. |..+.++++|+++.|++
T Consensus 211 tLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~--------Fy~l~kme~l~L~~N~l 281 (873)
T KOG4194|consen 211 TLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGA--------FYGLEKMEHLNLETNRL 281 (873)
T ss_pred ccCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcc--------eeeecccceeecccchh
Confidence 344444555666666666666665 444445567777777777777666544332 44566666666666666
Q ss_pred CCCCChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhcc
Q 043523 260 PGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFM 339 (650)
Q Consensus 260 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~ 339 (650)
......|++... .|+.|+++ .|.|..+..+.+.++
T Consensus 282 ~~vn~g~lfgLt------------------------~L~~L~lS---------------------~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 282 QAVNEGWLFGLT------------------------SLEQLDLS---------------------YNAIQRIHIDSWSFT 316 (873)
T ss_pred hhhhcccccccc------------------------hhhhhccc---------------------hhhhheeecchhhhc
Confidence 544444444322 22222222 222222222233334
Q ss_pred CCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccE
Q 043523 340 SETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQI 419 (650)
Q Consensus 340 ~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 419 (650)
++|+.|+++.|.+....+.++..+..|++ |.++.|.+. .+.+..|..+.+|++
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~--------------------------LnLs~Nsi~-~l~e~af~~lssL~~ 369 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRVLSQLEE--------------------------LNLSHNSID-HLAEGAFVGLSSLHK 369 (873)
T ss_pred ccceeEeccccccccCChhHHHHHHHhhh--------------------------hcccccchH-HHHhhHHHHhhhhhh
Confidence 44444444444444444444444444444 444444433 444455666666666
Q ss_pred EEcCCCccccc---cchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeC
Q 043523 420 LDLGGNQLQGV---VPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDL 496 (650)
Q Consensus 420 L~ls~~~i~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l 496 (650)
||++.|.+... ...+|..+++|+.|++.+|++..+.-.+|.+++.|++|+|.+|.|-+.. +..+..+ .|++|.+
T Consensus 370 LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq--~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 370 LDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQ--PNAFEPM-ELKELVM 446 (873)
T ss_pred hcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeec--ccccccc-hhhhhhh
Confidence 66666665433 2345666777777777777777766666777777777777777776555 5556665 7777777
Q ss_pred CCcccccccChHHHHhHHh
Q 043523 497 ASNKFSGRLSQKWLLTMEE 515 (650)
Q Consensus 497 ~~n~~~~~~~~~~~~~l~~ 515 (650)
..-.+.|.|...|+.+|..
T Consensus 447 nSssflCDCql~Wl~qWl~ 465 (873)
T KOG4194|consen 447 NSSSFLCDCQLKWLAQWLY 465 (873)
T ss_pred cccceEEeccHHHHHHHHH
Confidence 7778888899999988753
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-36 Score=292.23 Aligned_cols=395 Identities=21% Similarity=0.214 Sum_probs=256.2
Q ss_pred ccEEEccCCcCcCCCCCCCCCC--CCCcEEEcCCCccccCCCcCccCCCCCcEEEccCCcccccCCccccCCCcCEEeCC
Q 043523 47 LRNLILSGTGFSGTLPDSIGNL--ENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLS 124 (650)
Q Consensus 47 L~~L~L~~~~~~~~~~~~~~~l--~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~ 124 (650)
-+.|+.++..+.......+... +.-+.|++++|++....+..|.++++|+.+++..|.++.+|.......+++.|++.
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLR 133 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeee
Confidence 4668888887763322333332 24567999999999988999999999999999999999666555555779999999
Q ss_pred CCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCC
Q 043523 125 FNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEG 204 (650)
Q Consensus 125 ~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 204 (650)
+|.|.+....+ ++.++.|+.||++.|.+..+....|..-.++++|++++|.++ .+....+..+.+|..|.++.|+++
T Consensus 134 ~N~I~sv~se~-L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLsrNrit- 210 (873)
T KOG4194|consen 134 HNLISSVTSEE-LSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRIT-TLETGHFDSLNSLLTLKLSRNRIT- 210 (873)
T ss_pred ccccccccHHH-HHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccc-ccccccccccchheeeecccCccc-
Confidence 99998544444 899999999999999999777778888889999999999988 344445555667888888888888
Q ss_pred CCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccCCcCCCCCChhHHhhcCcccceeeecccc
Q 043523 205 PVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNL 284 (650)
Q Consensus 205 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~ 284 (650)
.+|...|..+++|+.|+|..|.+.-+.... |+++++|+.|.+..|.|.
T Consensus 211 tLp~r~Fk~L~~L~~LdLnrN~irive~lt--------FqgL~Sl~nlklqrN~I~------------------------ 258 (873)
T KOG4194|consen 211 TLPQRSFKRLPKLESLDLNRNRIRIVEGLT--------FQGLPSLQNLKLQRNDIS------------------------ 258 (873)
T ss_pred ccCHHHhhhcchhhhhhccccceeeehhhh--------hcCchhhhhhhhhhcCcc------------------------
Confidence 778777777888777777777654221100 333333333333333322
Q ss_pred ccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCC
Q 043523 285 LVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGI 364 (650)
Q Consensus 285 l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~ 364 (650)
.+.+. .|..+.
T Consensus 259 ---------------------------------------------kL~DG------------------------~Fy~l~ 269 (873)
T KOG4194|consen 259 ---------------------------------------------KLDDG------------------------AFYGLE 269 (873)
T ss_pred ---------------------------------------------cccCc------------------------ceeeec
Confidence 11112 222233
Q ss_pred cccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEE
Q 043523 365 YFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVL 444 (650)
Q Consensus 365 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L 444 (650)
.++.|+++.|++. ....+.+.++++|+.|++|+|.|.++.+.+++-+++|++|
T Consensus 270 kme~l~L~~N~l~---------------------------~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~L 322 (873)
T KOG4194|consen 270 KMEHLNLETNRLQ---------------------------AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKEL 322 (873)
T ss_pred ccceeecccchhh---------------------------hhhcccccccchhhhhccchhhhheeecchhhhcccceeE
Confidence 3333333333332 2222334445555555555555555555555555555555
Q ss_pred eCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccC
Q 043523 445 DLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSG 524 (650)
Q Consensus 445 ~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~ 524 (650)
+|++|+++...++.|..+..|++|+|++|++.... ...+..+.+|++|||++|.+...+..
T Consensus 323 dLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~--e~af~~lssL~~LdLr~N~ls~~IED----------------- 383 (873)
T KOG4194|consen 323 DLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLA--EGAFVGLSSLHKLDLRSNELSWCIED----------------- 383 (873)
T ss_pred eccccccccCChhHHHHHHHhhhhcccccchHHHH--hhHHHHhhhhhhhcCcCCeEEEEEec-----------------
Confidence 55555555555555555555555555555554433 33444555555555555554321111
Q ss_pred cccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCc
Q 043523 525 SELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSF 604 (650)
Q Consensus 525 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~ 604 (650)
...++..+++|+.|++.+|++..+...+|.++.+|+.|+|.+|.|..+.+++|
T Consensus 384 ---------------------------aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAF 436 (873)
T KOG4194|consen 384 ---------------------------AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAF 436 (873)
T ss_pred ---------------------------chhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccc
Confidence 12334457777778888888877888888888888888888888888888888
Q ss_pred cCCCCCCeeeCCCCc
Q 043523 605 GNLKQIESLDLSMNN 619 (650)
Q Consensus 605 ~~l~~L~~L~l~~n~ 619 (650)
..+ .|+.|.+..-.
T Consensus 437 e~m-~Lk~Lv~nSss 450 (873)
T KOG4194|consen 437 EPM-ELKELVMNSSS 450 (873)
T ss_pred ccc-hhhhhhhcccc
Confidence 877 77777665443
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=3.9e-39 Score=295.61 Aligned_cols=259 Identities=27% Similarity=0.379 Sum_probs=136.7
Q ss_pred ecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccc
Q 043523 3 DLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFT 82 (650)
Q Consensus 3 ~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~ 82 (650)
.+++|.++ .....+.++..+.++++++|+. ...++++.++..++.+++++|++. .+|..+..+++|+.+++++|.+.
T Consensus 51 ils~N~l~-~l~~dl~nL~~l~vl~~~~n~l-~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~ 127 (565)
T KOG0472|consen 51 ILSHNDLE-VLREDLKNLACLTVLNVHDNKL-SQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK 127 (565)
T ss_pred hhccCchh-hccHhhhcccceeEEEeccchh-hhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee
Confidence 34444444 2223345555555555555554 333445555555555555555555 55555555555555555555555
Q ss_pred cCCCcCccCCCCCcEEEccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhcc
Q 043523 83 GPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLF 162 (650)
Q Consensus 83 ~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 162 (650)
..|..++.+-.|+.++..+|++...+++++.+.++..+++.+|.++ ..+...+. ++.|+++++..|.++ ..|..++
T Consensus 128 -el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg 203 (565)
T KOG0472|consen 128 -ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNSNLLE-TLPPELG 203 (565)
T ss_pred -ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccchhhhh-cCChhhc
Confidence 4555555555555555555555555555555555555555555555 33333223 555555555555555 4455555
Q ss_pred CCCCCCEEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCC
Q 043523 163 LLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPI 242 (650)
Q Consensus 163 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~ 242 (650)
.+.+|..|++++|.+. ..|++ ..|..|.++..+.|.+. .+|.....++
T Consensus 204 ~l~~L~~LyL~~Nki~-~lPef--~gcs~L~Elh~g~N~i~-~lpae~~~~L---------------------------- 251 (565)
T KOG0472|consen 204 GLESLELLYLRRNKIR-FLPEF--PGCSLLKELHVGENQIE-MLPAEHLKHL---------------------------- 251 (565)
T ss_pred chhhhHHHHhhhcccc-cCCCC--CccHHHHHHHhcccHHH-hhHHHHhccc----------------------------
Confidence 5555555555555554 23322 22444555555555544 4444443444
Q ss_pred CCCCCCCcEEEccCCcCCCCCChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccCcC
Q 043523 243 LKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQL 307 (650)
Q Consensus 243 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l 307 (650)
+++..||+.+|++. +.|+.++-... |++|++++|.++.+|...+--+|+.+.+.+|++
T Consensus 252 ----~~l~vLDLRdNklk-e~Pde~clLrs--L~rLDlSNN~is~Lp~sLgnlhL~~L~leGNPl 309 (565)
T KOG0472|consen 252 ----NSLLVLDLRDNKLK-EVPDEICLLRS--LERLDLSNNDISSLPYSLGNLHLKFLALEGNPL 309 (565)
T ss_pred ----ccceeeeccccccc-cCchHHHHhhh--hhhhcccCCccccCCcccccceeeehhhcCCch
Confidence 44555555555554 55655554433 666666666666666555422666666666654
No 6
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-35 Score=298.78 Aligned_cols=146 Identities=31% Similarity=0.430 Sum_probs=110.5
Q ss_pred CeecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCc
Q 043523 1 TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCN 80 (650)
Q Consensus 1 ~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 80 (650)
++|.+.+.++ ..|..+-....+..|.++.|.+..-..+...+..+|+.|++++|.+. ..|..+..+++|+.|+++.|.
T Consensus 2 ~vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~ 79 (1081)
T KOG0618|consen 2 HVDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNY 79 (1081)
T ss_pred CcccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhh
Confidence 4677888888 44444444445888888888876655556666667888888888877 677888888888888888888
Q ss_pred cccCCCcCccCCCCCcEEEccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCC
Q 043523 81 FTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHN 151 (650)
Q Consensus 81 l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 151 (650)
+. ..|....++.+|++++|.+|.+...+..+..+.+|++|++++|... .++.- +..+..++.+..++|
T Consensus 80 i~-~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~-~~Pl~-i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 80 IR-SVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFG-PIPLV-IEVLTAEEELAASNN 147 (1081)
T ss_pred Hh-hCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccC-CCchh-HHhhhHHHHHhhhcc
Confidence 87 7777788888888888888888777777777888888888888776 44544 667777777777777
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=3.3e-36 Score=276.41 Aligned_cols=462 Identities=27% Similarity=0.330 Sum_probs=358.2
Q ss_pred eecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCcc
Q 043523 2 LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNF 81 (650)
Q Consensus 2 L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l 81 (650)
|++++|.+. ..|.+++++..+..++.++|++ ...++.+..+..++.++.+.|.+. .+++.++.+..|+.++..+|++
T Consensus 73 l~~~~n~l~-~lp~aig~l~~l~~l~vs~n~l-s~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i 149 (565)
T KOG0472|consen 73 LNVHDNKLS-QLPAAIGELEALKSLNVSHNKL-SELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQI 149 (565)
T ss_pred EEeccchhh-hCCHHHHHHHHHHHhhcccchH-hhccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhcccccc
Confidence 678888888 7888999999999999999998 566778888999999999999998 8899999999999999999999
Q ss_pred ccCCCcCccCCCCCcEEEccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhc
Q 043523 82 TGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSL 161 (650)
Q Consensus 82 ~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 161 (650)
+ ..|.++..+.+|..+++.+|++...++....+..|+++|...|.+. .++.+ ++++.+|+-|++.+|++. ..| .|
T Consensus 150 ~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~-lg~l~~L~~LyL~~Nki~-~lP-ef 224 (565)
T KOG0472|consen 150 S-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPE-LGGLESLELLYLRRNKIR-FLP-EF 224 (565)
T ss_pred c-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChh-hcchhhhHHHHhhhcccc-cCC-CC
Confidence 9 8899999999999999999999999998777999999999999987 67777 899999999999999998 455 89
Q ss_pred cCCCCCCEEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCC
Q 043523 162 FLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIP 241 (650)
Q Consensus 162 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~ 241 (650)
..+..|+++.+..|++. ..+......+.++..||+.+|++. ++|..+ +.+.+|+.||+++|.++.+...
T Consensus 225 ~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~-clLrsL~rLDlSNN~is~Lp~s-------- 293 (565)
T KOG0472|consen 225 PGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEI-CLLRSLERLDLSNNDISSLPYS-------- 293 (565)
T ss_pred CccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHH-HHhhhhhhhcccCCccccCCcc--------
Confidence 99999999999999988 566666667899999999999999 899988 7899999999999998744322
Q ss_pred CCCCCCCCcEEEccCCcCCCCCChhHHhhc-CcccceeeeccccccCCcCcccCCcccEEEeccCc-CCCCCC--CCCCC
Q 043523 242 ILKNQSQLSGLDISNNQIPGEIPNWIWEVG-NGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQ-LRGNIP--HMSTN 317 (650)
Q Consensus 242 ~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~-~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~-l~~~~~--~~~~~ 317 (650)
++++ +|+.|-+.||.+.+ +-..+...+ ..-|++|.= .+++- ++..=+.-..+.-. ..+..+ ....+
T Consensus 294 -Lgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs---~~~~d----glS~se~~~e~~~t~~~~~~~~~~~~i~ 363 (565)
T KOG0472|consen 294 -LGNL-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRS---KIKDD----GLSQSEGGTETAMTLPSESFPDIYAIIT 363 (565)
T ss_pred -cccc-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHH---hhccC----CCCCCcccccccCCCCCCcccchhhhhh
Confidence 7777 89999999998752 222221111 111222211 00000 00000000000000 000001 12346
Q ss_pred ccEEecCCCcCCCCchhhhhccC--CccEEEccCCcccccccccccCCCcccE-EECcCccccccCChhhhhccccCccE
Q 043523 318 TSYVDYSNNHFTFIPADIGNFMS--ETEYFFAANNSLVGVIPESVCKGIYFQV-LDLSNNNLSGTIPACLIAQSETTLGV 394 (650)
Q Consensus 318 L~~L~l~~~~i~~~~~~~~~~~~--~l~~l~l~~~~~~~~~~~~l~~~~~L~~-L~l~~~~~~~~~~~~~~~~~~~~L~~ 394 (650)
.+.|++++-+++.+|+.+|..-. -...++++.|++. ++|..+..++.+.+ +.+++|.+. -+|..+... ++|+.
T Consensus 364 tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l--~kLt~ 439 (565)
T KOG0472|consen 364 TKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQL--QKLTF 439 (565)
T ss_pred hhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhh--hccee
Confidence 77888889899999998887432 3678889988877 56766666666554 445555443 444444443 38999
Q ss_pred EEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcc
Q 043523 395 LNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNN 474 (650)
Q Consensus 395 L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~ 474 (650)
|++++|-+- .+|.+ +..+..|+.|+++.|++. ..|+.+..+..++.+-.++|++..+.+..+.+|.+|++|++.+|.
T Consensus 440 L~L~NN~Ln-~LP~e-~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNd 516 (565)
T KOG0472|consen 440 LDLSNNLLN-DLPEE-MGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNND 516 (565)
T ss_pred eecccchhh-hcchh-hhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCc
Confidence 999998766 66666 667778999999999988 788888888888888888999999888889999999999999999
Q ss_pred cceecCCCCCCCCCCCCCeeeCCCcccc
Q 043523 475 FSGHISCPRNNVSWPLLQIVDLASNKFS 502 (650)
Q Consensus 475 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 502 (650)
+.. +++.++++++|++|++.+|+|-
T Consensus 517 lq~---IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 517 LQQ---IPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhh---CChhhccccceeEEEecCCccC
Confidence 874 3888999999999999999986
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=2.5e-33 Score=283.85 Aligned_cols=478 Identities=26% Similarity=0.311 Sum_probs=368.3
Q ss_pred eecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCcc
Q 043523 2 LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNF 81 (650)
Q Consensus 2 L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l 81 (650)
|++..|.+....-+.+.+.-+|+.||+++|++ ...+..+..+++|+.|.++.|-+. ..|.+..++.+|+++.|.+|.+
T Consensus 26 ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~-~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l 103 (1081)
T KOG0618|consen 26 LNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQI-SSFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRL 103 (1081)
T ss_pred hhccccccccCchHHhhheeeeEEeecccccc-ccCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchh
Confidence 56666766543344455666699999999998 556667888999999999999998 7889999999999999999999
Q ss_pred ccCCCcCccCCCCCcEEEccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhc
Q 043523 82 TGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSL 161 (650)
Q Consensus 82 ~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 161 (650)
. .+|..+..+++|++|+++.|++...+.-+..+..+..+..++|..... ++... ++.+++..+.+....+.+.
T Consensus 104 ~-~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~-----lg~~~-ik~~~l~~n~l~~~~~~~i 176 (1081)
T KOG0618|consen 104 Q-SLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQR-----LGQTS-IKKLDLRLNVLGGSFLIDI 176 (1081)
T ss_pred h-cCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhh-----hcccc-chhhhhhhhhcccchhcch
Confidence 8 899999999999999999999998888888999999999999932211 22222 7788888887777766666
Q ss_pred cCCCCCCEEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCC
Q 043523 162 FLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIP 241 (650)
Q Consensus 162 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~ 241 (650)
..+.. .+++++|.+. ......+..|+.+....|++. .+. -.-++++.|..+.|.++....
T Consensus 177 ~~l~~--~ldLr~N~~~----~~dls~~~~l~~l~c~rn~ls-~l~----~~g~~l~~L~a~~n~l~~~~~--------- 236 (1081)
T KOG0618|consen 177 YNLTH--QLDLRYNEME----VLDLSNLANLEVLHCERNQLS-ELE----ISGPSLTALYADHNPLTTLDV--------- 236 (1081)
T ss_pred hhhhe--eeecccchhh----hhhhhhccchhhhhhhhcccc-eEE----ecCcchheeeeccCcceeecc---------
Confidence 66655 6888888775 122234567777777777665 222 234678888888887763221
Q ss_pred CCCCCCCCcEEEccCCcCCCCCChhHHhhcCcccceeeeccccccCCcCccc-CCcccEEEeccCcCCCCCCC--CCCCc
Q 043523 242 ILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYS-ISSIRLLDLHSNQLRGNIPH--MSTNT 318 (650)
Q Consensus 242 ~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~-l~~L~~L~l~~~~l~~~~~~--~~~~L 318 (650)
-....+++.++++.+.+. ..|+|+..+.. ++.+....|.+..++.... ..+|+.+.+..|.+....+. ....+
T Consensus 237 -~p~p~nl~~~dis~n~l~-~lp~wi~~~~n--le~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL 312 (1081)
T KOG0618|consen 237 -HPVPLNLQYLDISHNNLS-NLPEWIGACAN--LEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSL 312 (1081)
T ss_pred -ccccccceeeecchhhhh-cchHHHHhccc--ceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCccccccee
Confidence 223457899999999887 77788887665 9999999998887765543 67888888888887654443 35788
Q ss_pred cEEecCCCcCCCCchhhhhccCC-ccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEc
Q 043523 319 SYVDYSNNHFTFIPADIGNFMSE-TEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNL 397 (650)
Q Consensus 319 ~~L~l~~~~i~~~~~~~~~~~~~-l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 397 (650)
++|++..|++..+|+.++.-... ++.+..+.+.+.......=...+.|+.|++.+|.+++...+.+.... +|+.|++
T Consensus 313 ~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~--hLKVLhL 390 (1081)
T KOG0618|consen 313 RTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFK--HLKVLHL 390 (1081)
T ss_pred eeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcccc--ceeeeee
Confidence 89999999999888877664444 66666666655533222223456799999999999987777776665 9999999
Q ss_pred cCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccce
Q 043523 398 GRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSG 477 (650)
Q Consensus 398 ~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 477 (650)
++|++. ++|+..+..+..|++|++|||+++ .+|..+..++.|+.|...+|++.. .| .+..++.|+.++++.|.+..
T Consensus 391 syNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~-fP-e~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 391 SYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS-FP-ELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred cccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee-ch-hhhhcCcceEEecccchhhh
Confidence 999988 888888999999999999999999 778999999999999999999987 66 68899999999999999987
Q ss_pred ecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhc
Q 043523 478 HISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAET 521 (650)
Q Consensus 478 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~ 521 (650)
.. ......+++|++||+++|... ......++.+..+...+.
T Consensus 467 ~~--l~~~~p~p~LkyLdlSGN~~l-~~d~~~l~~l~~l~~~~i 507 (1081)
T KOG0618|consen 467 VT--LPEALPSPNLKYLDLSGNTRL-VFDHKTLKVLKSLSQMDI 507 (1081)
T ss_pred hh--hhhhCCCcccceeeccCCccc-ccchhhhHHhhhhhheec
Confidence 65 555666799999999999863 344445555555444443
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=2.3e-31 Score=257.92 Aligned_cols=181 Identities=26% Similarity=0.362 Sum_probs=126.0
Q ss_pred ccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhc
Q 043523 356 IPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSL 435 (650)
Q Consensus 356 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~ 435 (650)
+|.++..+.+|..+|++.|++. .+|+++ ..+.+|+.|++|+|+|+ .+....
T Consensus 214 ~Ptsld~l~NL~dvDlS~N~Lp-~vPecl---------------------------y~l~~LrrLNLS~N~it-eL~~~~ 264 (1255)
T KOG0444|consen 214 IPTSLDDLHNLRDVDLSENNLP-IVPECL---------------------------YKLRNLRRLNLSGNKIT-ELNMTE 264 (1255)
T ss_pred CCCchhhhhhhhhccccccCCC-cchHHH---------------------------hhhhhhheeccCcCcee-eeeccH
Confidence 4445556666777777777665 445443 33445666666666665 333334
Q ss_pred ccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHh
Q 043523 436 ANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEE 515 (650)
Q Consensus 436 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~ 515 (650)
..-.+|+.|++|.|+++. .|.+++.+++|++|++.+|+++ ..+++..+.++.+|+++..++|.+.
T Consensus 265 ~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~-FeGiPSGIGKL~~Levf~aanN~LE------------- 329 (1255)
T KOG0444|consen 265 GEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLT-FEGIPSGIGKLIQLEVFHAANNKLE------------- 329 (1255)
T ss_pred HHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCccc-ccCCccchhhhhhhHHHHhhccccc-------------
Confidence 445677888888888876 7778888888888888888875 3345667777777777777776542
Q ss_pred hHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCcccc
Q 043523 516 MMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNA 595 (650)
Q Consensus 516 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~ 595 (650)
..|+.+++|.+|+.|+|+.|+
T Consensus 330 -----------------------------------------------------------lVPEglcRC~kL~kL~L~~Nr 350 (1255)
T KOG0444|consen 330 -----------------------------------------------------------LVPEGLCRCVKLQKLKLDHNR 350 (1255)
T ss_pred -----------------------------------------------------------cCchhhhhhHHHHHhcccccc
Confidence 677889999999999999998
Q ss_pred CcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEcc
Q 043523 596 LTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLS 640 (650)
Q Consensus 596 i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~ 640 (650)
+. ..|+++.-++.|++||+.+|.-..-+|.-=..-++|+..++.
T Consensus 351 Li-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 351 LI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred ee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence 88 789999999999999999997765555433333556655554
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=1.4e-30 Score=252.61 Aligned_cols=363 Identities=25% Similarity=0.329 Sum_probs=196.6
Q ss_pred CCCCCEEeCCCCCCCC-CCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEE
Q 043523 20 VPTLETLDLSENQLLQ-GSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHM 98 (650)
Q Consensus 20 ~~~L~~L~ls~~~i~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L 98 (650)
++..|-+|+++|.+.. ..+.....+..++.|.|.+.++. .+|+.++.+.+|++|.+++|++. .+...+..++.|+.+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV 83 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence 4556667777777652 23334455667777777777666 66777777777777777777776 455566677777777
Q ss_pred EccCCcc--cccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCc
Q 043523 99 DFSSNHF--SGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQ 176 (650)
Q Consensus 99 ~l~~~~i--~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 176 (650)
.+.+|++ .++++.++++..|+.||+++|.+. ..+.. +.+-+++-+|++++|+|..+....+.++..|-.||+++|+
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~-LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTN-LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhh-hcchh-hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence 7777755 346667777777777777777766 45555 5666666666666666664443444445555555555554
Q ss_pred CCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccC
Q 043523 177 FENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISN 256 (650)
Q Consensus 177 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~ 256 (650)
+. .+|..+ ..+.+|+.|.+++|++....+. .+..++.|++|.+++
T Consensus 162 -------------------------Le-~LPPQ~-RRL~~LqtL~Ls~NPL~hfQLr--------QLPsmtsL~vLhms~ 206 (1255)
T KOG0444|consen 162 -------------------------LE-MLPPQI-RRLSMLQTLKLSNNPLNHFQLR--------QLPSMTSLSVLHMSN 206 (1255)
T ss_pred -------------------------hh-hcCHHH-HHHhhhhhhhcCCChhhHHHHh--------cCccchhhhhhhccc
Confidence 44 566655 5677777777777776643221 144556677777776
Q ss_pred CcCC-CCCChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhh
Q 043523 257 NQIP-GEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADI 335 (650)
Q Consensus 257 ~~i~-~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 335 (650)
.+-+ ..+|..+-...+ |..++++.|.+..+| ..+
T Consensus 207 TqRTl~N~Ptsld~l~N--L~dvDlS~N~Lp~vP-------------------------------------------ecl 241 (1255)
T KOG0444|consen 207 TQRTLDNIPTSLDDLHN--LRDVDLSENNLPIVP-------------------------------------------ECL 241 (1255)
T ss_pred ccchhhcCCCchhhhhh--hhhccccccCCCcch-------------------------------------------HHH
Confidence 5422 234443333222 333333333333333 222
Q ss_pred hhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCc-CCCcccCCC
Q 043523 336 GNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGT-LSDTIFPRN 414 (650)
Q Consensus 336 ~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~l 414 (650)
.. .++|+.|++++|.++. +......-.+|++|+++.|+++ .+|.+..... +|+.|++.+|++.=+ +|.. ++.+
T Consensus 242 y~-l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~--kL~kLy~n~NkL~FeGiPSG-IGKL 315 (1255)
T KOG0444|consen 242 YK-LRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLT--KLTKLYANNNKLTFEGIPSG-IGKL 315 (1255)
T ss_pred hh-hhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhH--HHHHHHhccCcccccCCccc-hhhh
Confidence 21 2222222222222221 1111222235566666666655 5555554433 555555555554422 2222 4444
Q ss_pred CCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcc
Q 043523 415 CGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNN 474 (650)
Q Consensus 415 ~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~ 474 (650)
.+|+++..++|.+. ..|+++..|..|+.|.|+.|++.. .|+.+.-++.|+.|++..|+
T Consensus 316 ~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 316 IQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred hhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceee-chhhhhhcCCcceeeccCCc
Confidence 45555555555544 445555555555555555555444 44444445555555555554
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.93 E-value=1e-27 Score=220.49 Aligned_cols=440 Identities=19% Similarity=0.179 Sum_probs=283.5
Q ss_pred EccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccC-CcC
Q 043523 99 DFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSN-NQF 177 (650)
Q Consensus 99 ~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~ 177 (650)
+.++-.++++|..+- +....++|..|.|+ .++...|+.+++|+.+++++|+|+.+.|++|..++++..|.+.+ |.|
T Consensus 52 dCr~~GL~eVP~~LP--~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 52 DCRGKGLTEVPANLP--PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred EccCCCcccCcccCC--CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 334444444443322 56778888899888 55665589999999999999999988999999999888888777 677
Q ss_pred CCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccCC
Q 043523 178 ENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNN 257 (650)
Q Consensus 178 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~ 257 (650)
+ .++...+..+..++.|.+.-|++. .++...|..++++..|.+..|.+..+.... +.....++.+.+..|
T Consensus 129 ~-~l~k~~F~gL~slqrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~t--------f~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 129 T-DLPKGAFGGLSSLQRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGT--------FQGLAAIKTLHLAQN 198 (498)
T ss_pred h-hhhhhHhhhHHHHHHHhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhcccc--------ccchhccchHhhhcC
Confidence 6 556666666777888888888877 677777888888888888888776543322 555566666666665
Q ss_pred cCCCC-CChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhh
Q 043523 258 QIPGE-IPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIG 336 (650)
Q Consensus 258 ~i~~~-~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~ 336 (650)
.+... -..|....- ..+.
T Consensus 199 p~icdCnL~wla~~~-------------------------------a~~~------------------------------ 217 (498)
T KOG4237|consen 199 PFICDCNLPWLADDL-------------------------------AMNP------------------------------ 217 (498)
T ss_pred ccccccccchhhhHH-------------------------------hhch------------------------------
Confidence 53211 111111100 0000
Q ss_pred hccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCC
Q 043523 337 NFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCG 416 (650)
Q Consensus 337 ~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 416 (650)
..+++........+.+..+..+-+..+.... ..+..-..+.|.+.+..|...|..+++
T Consensus 218 ---------------------ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~-esl~s~~~~~d~~d~~cP~~cf~~L~~ 275 (498)
T KOG4237|consen 218 ---------------------IETSGARCVSPYRLYYKRINQEDARKFLCSL-ESLPSRLSSEDFPDSICPAKCFKKLPN 275 (498)
T ss_pred ---------------------hhcccceecchHHHHHHHhcccchhhhhhhH-HhHHHhhccccCcCCcChHHHHhhccc
Confidence 0000000011111111111111111111110 022222223344444566667999999
Q ss_pred ccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeC
Q 043523 417 LQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDL 496 (650)
Q Consensus 417 L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l 496 (650)
|+.|++++|+++++-+.+|++..++++|.|..|++..+....|.++..|++|+|.+|+|+... +..+....+|.+|++
T Consensus 276 L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~--~~aF~~~~~l~~l~l 353 (498)
T KOG4237|consen 276 LRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVA--PGAFQTLFSLSTLNL 353 (498)
T ss_pred ceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEe--cccccccceeeeeeh
Confidence 999999999999999999999999999999999999988889999999999999999999887 888999999999999
Q ss_pred CCcccccccChHHHHhHHhhHhhhcc-cC---cccccceeeccCCceeecceEEee-ccchhhcccCCCcccEEeCCCCc
Q 043523 497 ASNKFSGRLSQKWLLTMEEMMVAETK-SG---SELKHLRYVISSNQFYEVGVTVTV-KGVETMLLKVPNIFTSIDFSSNN 571 (650)
Q Consensus 497 ~~n~~~~~~~~~~~~~l~~l~~~~~~-~~---~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~L~l~~~~ 571 (650)
-.|++.|.+...|+..|.+-...... -+ ..++.++......+......+... .......-..++.+...--.+|+
T Consensus 354 ~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk 433 (498)
T KOG4237|consen 354 LSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNK 433 (498)
T ss_pred ccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhccc
Confidence 99999999999999998775442111 11 122333333322222211111111 11111111223333333333333
Q ss_pred cccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCC
Q 043523 572 FEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYN 642 (650)
Q Consensus 572 ~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n 642 (650)
.....+..+. ..-.++++.+|.++ .+|.. .+.+| .+|+++|+++...-..|.++++|.+|-|++|
T Consensus 434 ~lk~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 434 LLKLLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred chhhcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 3334444343 36678889999888 55554 56778 8899999998887788899999999988876
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=9.5e-22 Score=223.93 Aligned_cols=347 Identities=21% Similarity=0.204 Sum_probs=263.1
Q ss_pred cccccccCCCCCCEEeCCCCCCC------CCCCCCCCCC-CcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccC
Q 043523 12 KFPEKILQVPTLETLDLSENQLL------QGSLPNFPKN-SSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGP 84 (650)
Q Consensus 12 ~~~~~~~~~~~L~~L~ls~~~i~------~~~~~~~~~l-~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~ 84 (650)
..+.+|..+++|+.|.+.++... ...++.|..+ ++|+.|.+.++.+. .+|..+ ...+|+.|++.++.+. .
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~ 625 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-K 625 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-c
Confidence 34567999999999999766431 1223345444 46999999999887 777777 5789999999999988 6
Q ss_pred CCcCccCCCCCcEEEccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCC
Q 043523 85 IPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLL 164 (650)
Q Consensus 85 ~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 164 (650)
++..+..+++|+.|+++++......+.+..+++|++|++++|.....++.. +.++++|+.|++++|..-...|..+ .+
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 788888999999999998754445567788899999999998765567766 7899999999999875444555544 68
Q ss_pred CCCCEEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCC-C
Q 043523 165 PNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPI-L 243 (650)
Q Consensus 165 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~-l 243 (650)
++|+.|++++|.....++. ...+|+.|+++++.+. .+|..+ .+++|+.|.+.++....+..... ...+. .
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~--~l~~~~~ 774 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEKLWERVQ--PLTPLMT 774 (1153)
T ss_pred CCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccc-cccccc--cccccccccccccchhhcccccc--ccchhhh
Confidence 8999999999865444443 2467999999999887 677544 57888888888765432221110 00011 2
Q ss_pred CCCCCCcEEEccCCcCCCCCChhHHhhcCcccceeeeccc-cccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccEEe
Q 043523 244 KNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHN-LLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVD 322 (650)
Q Consensus 244 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~-~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~ 322 (650)
..+++|+.|++++|.....+|.++..+. +|+.|++++| .+..+|....+++|+.|++++|......+....+++.|+
T Consensus 775 ~~~~sL~~L~Ls~n~~l~~lP~si~~L~--~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~ 852 (1153)
T PLN03210 775 MLSPSLTRLFLSDIPSLVELPSSIQNLH--KLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLN 852 (1153)
T ss_pred hccccchheeCCCCCCccccChhhhCCC--CCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeE
Confidence 3457899999999987778898876554 5999999998 688888777889999999999977666666678899999
Q ss_pred cCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCcc
Q 043523 323 YSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNN 375 (650)
Q Consensus 323 l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 375 (650)
+++|.++.+|..+.. +++|+.+++++|.-...+|..+..+++|+.+++++|.
T Consensus 853 Ls~n~i~~iP~si~~-l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 853 LSRTGIEEVPWWIEK-FSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCCCccChHHHhc-CCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 999999988877654 7888888888876665677777778888888888875
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.3e-21 Score=222.81 Aligned_cols=159 Identities=21% Similarity=0.224 Sum_probs=110.7
Q ss_pred CCCCCCCCCcccEEEccCCc------CcCCCCCCCCCCC-CCcEEEcCCCccccCCCcCccCCCCCcEEEccCCcccccC
Q 043523 37 SLPNFPKNSSLRNLILSGTG------FSGTLPDSIGNLE-NLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHI 109 (650)
Q Consensus 37 ~~~~~~~l~~L~~L~L~~~~------~~~~~~~~~~~l~-~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~ 109 (650)
...+|.++++|+.|.+..+. +...+|..+..++ +|++|.+.++.+. .+|..| ...+|+.|++.++++...+
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~L~ 627 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEKLW 627 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccccc
Confidence 33468888899998886543 2234666777764 5889999888887 677776 4688889999888888777
Q ss_pred CccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhcCC
Q 043523 110 PSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSS 189 (650)
Q Consensus 110 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 189 (650)
.++..+++|+.|+++++.....++. ++.+++|+.|++++|......|..+..+++|+.|++++|.....++... .+
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l 703 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NL 703 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CC
Confidence 7777888888888887754334443 6778888888888876555667777777888888887764332333211 34
Q ss_pred CCccEEEccCCc
Q 043523 190 SVLFDLDLSGNR 201 (650)
Q Consensus 190 ~~L~~L~l~~~~ 201 (650)
++|+.|++++|.
T Consensus 704 ~sL~~L~Lsgc~ 715 (1153)
T PLN03210 704 KSLYRLNLSGCS 715 (1153)
T ss_pred CCCCEEeCCCCC
Confidence 555555555554
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=2.1e-23 Score=192.37 Aligned_cols=293 Identities=23% Similarity=0.219 Sum_probs=184.1
Q ss_pred EEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccC
Q 043523 320 YVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGR 399 (650)
Q Consensus 320 ~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 399 (650)
.++.++-.++.+|.++ ++...++++..|.|..+.+..|..+++|+.|||++|.|+...|.+
T Consensus 50 ~VdCr~~GL~eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~A---------------- 110 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDA---------------- 110 (498)
T ss_pred eEEccCCCcccCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHh----------------
Confidence 4555566666676665 455566666666666555566666666666666666665444433
Q ss_pred ccCCCcCCCcccCCCCCccEEEcCC-CccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCccccee
Q 043523 400 NNLNGTLSDTIFPRNCGLQILDLGG-NQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGH 478 (650)
Q Consensus 400 ~~~~~~~~~~~~~~l~~L~~L~ls~-~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 478 (650)
|.+++++..|-+.+ |+|++....+|.++.+|+.|.+.-|++.-+....|..+++|..|.+..|.+...
T Consensus 111 -----------F~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i 179 (498)
T KOG4237|consen 111 -----------FKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSI 179 (498)
T ss_pred -----------hhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhh
Confidence 44444444444433 455544444555555555555555555555555555555555555555555433
Q ss_pred cCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccc--cceeeccCC-----------ce-eecce
Q 043523 479 ISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELK--HLRYVISSN-----------QF-YEVGV 544 (650)
Q Consensus 479 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~l~~~~~~~-----------~~-~~~~~ 544 (650)
. ...+....+++.+++..|++.+.+...|+.+.......+........ .+++..... ++ .....
T Consensus 180 ~--~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~ 257 (498)
T KOG4237|consen 180 C--KGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSS 257 (498)
T ss_pred c--cccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhcc
Confidence 2 33455555566666666666666666666555443333333221111 111100000 00 00000
Q ss_pred EE-eeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCcc
Q 043523 545 TV-TVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGK 623 (650)
Q Consensus 545 ~~-~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~ 623 (650)
.+ .........+...+.|+.|++++|+++++...+|.+...+++|.|..|+|..+....|.++..|+.|++++|+|+..
T Consensus 258 ~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~ 337 (498)
T KOG4237|consen 258 EDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTV 337 (498)
T ss_pred ccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEE
Confidence 01 11112234478899999999999999999999999999999999999999988889999999999999999999999
Q ss_pred CCccccCCCCCCeEEccCCcC
Q 043523 624 IPAQLASLNFLSVLNLSYNNL 644 (650)
Q Consensus 624 ~~~~l~~l~~L~~L~l~~n~~ 644 (650)
.|..|..+.+|.+|++-.||+
T Consensus 338 ~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 338 APGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred ecccccccceeeeeehccCcc
Confidence 999999999999999999986
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.82 E-value=1.8e-19 Score=189.93 Aligned_cols=265 Identities=23% Similarity=0.253 Sum_probs=149.0
Q ss_pred cceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccc
Q 043523 275 LNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVG 354 (650)
Q Consensus 275 L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~ 354 (650)
-..|+++.+.++.+|... .++++.|++.+|.++. .+..+++|++|++++|+++.+|.. ++.|+.|++.+|.+..
T Consensus 203 ~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~-LP~lp~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N~L~~ 276 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTSLPVL----PPGLLELSIFSNPLTH 276 (788)
T ss_pred CcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCC-CCCCCCCCcEEEecCCccCcccCc----ccccceeeccCCchhh
Confidence 344555555555554422 1345555555555543 233345566666666666655432 3456666666665542
Q ss_pred cccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchh
Q 043523 355 VIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKS 434 (650)
Q Consensus 355 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~ 434 (650)
+|.. ..+|+.|++++|.+. .+|.. .++|+.|++++|++. .++.. ..+|+.|++++|.+++ +|..
T Consensus 277 -Lp~l---p~~L~~L~Ls~N~Lt-~LP~~-----p~~L~~LdLS~N~L~-~Lp~l----p~~L~~L~Ls~N~L~~-LP~l 340 (788)
T PRK15387 277 -LPAL---PSGLCKLWIFGNQLT-SLPVL-----PPGLQELSVSDNQLA-SLPAL----PSELCKLWAYNNQLTS-LPTL 340 (788)
T ss_pred -hhhc---hhhcCEEECcCCccc-ccccc-----ccccceeECCCCccc-cCCCC----cccccccccccCcccc-cccc
Confidence 2211 134666666666665 33321 126777777777666 33331 1246667777777763 3321
Q ss_pred cccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHH
Q 043523 435 LANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTME 514 (650)
Q Consensus 435 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~ 514 (650)
..+|++|+|++|++.. +|.. .++|+.|++++|.+... +.. .++|+.|++++|+++. .+.
T Consensus 341 ---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~L---P~l---~~~L~~LdLs~N~Lt~-LP~------- 399 (788)
T PRK15387 341 ---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSL---PAL---PSGLKELIVSGNRLTS-LPV------- 399 (788)
T ss_pred ---ccccceEecCCCccCC-CCCC---CcccceehhhccccccC---ccc---ccccceEEecCCcccC-CCC-------
Confidence 2467777777777776 3322 35667777777776532 221 2456777777776541 110
Q ss_pred hhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccc
Q 043523 515 EMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHN 594 (650)
Q Consensus 515 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n 594 (650)
.++.|+.|++++|.++.+. .. ..+|+.|++++|
T Consensus 400 -------------------------------------------l~s~L~~LdLS~N~LssIP-~l---~~~L~~L~Ls~N 432 (788)
T PRK15387 400 -------------------------------------------LPSELKELMVSGNRLTSLP-ML---PSGLLSLSVYRN 432 (788)
T ss_pred -------------------------------------------cccCCCEEEccCCcCCCCC-cc---hhhhhhhhhccC
Confidence 1345667777777776432 22 246677777777
Q ss_pred cCcccCCcCccCCCCCCeeeCCCCcCCccCCccccC
Q 043523 595 ALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLAS 630 (650)
Q Consensus 595 ~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~ 630 (650)
+++ .+|..+..+++|+.|++++|++++..+..+..
T Consensus 433 qLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 433 QLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred ccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 777 56777777777777777777777666655533
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=3.1e-19 Score=188.17 Aligned_cols=263 Identities=24% Similarity=0.333 Sum_probs=180.5
Q ss_pred CcEEEccCCcCCCCCChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcC
Q 043523 249 LSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHF 328 (650)
Q Consensus 249 L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i 328 (650)
-..|+++++.+. .+|..+. .+++.|.+.+|.++.+|.. +++|++|++++|+++.. +..+++|+.|++++|++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~----~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsL-P~lp~sL~~L~Ls~N~L 274 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP----AHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSL-PVLPPGLLELSIFSNPL 274 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh----cCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcc-cCcccccceeeccCCch
Confidence 445666666665 4555443 2466677776666666542 46677777777766643 44456777777777777
Q ss_pred CCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCC
Q 043523 329 TFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSD 408 (650)
Q Consensus 329 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 408 (650)
+.++.. +..|+.|++++|.+... |. ..++|+.|++++|.+.+ +|.. ...|+.|++++|.+. .+|.
T Consensus 275 ~~Lp~l----p~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~-Lp~l-----p~~L~~L~Ls~N~L~-~LP~ 339 (788)
T PRK15387 275 THLPAL----PSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLAS-LPAL-----PSELCKLWAYNNQLT-SLPT 339 (788)
T ss_pred hhhhhc----hhhcCEEECcCCccccc-cc---cccccceeECCCCcccc-CCCC-----cccccccccccCccc-cccc
Confidence 765542 45677777777776643 32 23568888888887763 3331 126888888888877 4443
Q ss_pred cccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCC
Q 043523 409 TIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSW 488 (650)
Q Consensus 409 ~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 488 (650)
+. .+|+.|++++|+++. +|.. ..+|+.|++++|++.. +|.. ..+|+.|++++|+++.. +.. .
T Consensus 340 --lp--~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~L---P~l---~ 401 (788)
T PRK15387 340 --LP--SGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSL---PVL---P 401 (788)
T ss_pred --cc--cccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccCC---CCc---c
Confidence 21 478999999999884 4432 3578889999999886 4432 46799999999988743 222 3
Q ss_pred CCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCC
Q 043523 489 PLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFS 568 (650)
Q Consensus 489 ~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~ 568 (650)
++|+.|++++|.+.. ++. .+..|+.|+++
T Consensus 402 s~L~~LdLS~N~Lss-IP~--------------------------------------------------l~~~L~~L~Ls 430 (788)
T PRK15387 402 SELKELMVSGNRLTS-LPM--------------------------------------------------LPSGLLSLSVY 430 (788)
T ss_pred cCCCEEEccCCcCCC-CCc--------------------------------------------------chhhhhhhhhc
Confidence 679999999998752 111 23456789999
Q ss_pred CCccccCCCccccCCcCCCEEeCccccCcccCCcCc
Q 043523 569 SNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSF 604 (650)
Q Consensus 569 ~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~ 604 (650)
+|.++ .+|..+..+++|+.|+|++|++++..+..+
T Consensus 431 ~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 431 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred cCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 99998 456778899999999999999998766655
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=5.2e-18 Score=180.30 Aligned_cols=180 Identities=26% Similarity=0.344 Sum_probs=72.0
Q ss_pred cceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccc
Q 043523 275 LNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVG 354 (650)
Q Consensus 275 L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~ 354 (650)
...|+++++.++.+|... .+.++.|++++|.+.......+.+|+.|++++|+++.+|..+ ...++.+++++|.+.
T Consensus 180 ~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N~L~- 254 (754)
T PRK15370 180 KTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATL---PDTIQEMELSINRIT- 254 (754)
T ss_pred ceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhccCCCEEECCCCccccCChhh---hccccEEECcCCccC-
Confidence 334444444444433211 123444444444444332223334444444444444444332 223444444444443
Q ss_pred cccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchh
Q 043523 355 VIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKS 434 (650)
Q Consensus 355 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~ 434 (650)
.+|..+. .+|+.|++++|.+. .+|..+. .+|++|++++|++. .++.. +. .+|+.|++++|.++. +|..
T Consensus 255 ~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~----~sL~~L~Ls~N~Lt-~LP~~-lp--~sL~~L~Ls~N~Lt~-LP~~ 322 (754)
T PRK15370 255 ELPERLP--SALQSLDLFHNKIS-CLPENLP----EELRYLSVYDNSIR-TLPAH-LP--SGITHLNVQSNSLTA-LPET 322 (754)
T ss_pred cCChhHh--CCCCEEECcCCccC-ccccccC----CCCcEEECCCCccc-cCccc-ch--hhHHHHHhcCCcccc-CCcc
Confidence 2232221 23444444444443 2232221 14445555554444 22222 11 234445555554442 2222
Q ss_pred cccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccc
Q 043523 435 LANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFS 476 (650)
Q Consensus 435 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 476 (650)
+ .++|+.|++++|.+.. +|..+ +++|+.|++++|+++
T Consensus 323 l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~ 359 (754)
T PRK15370 323 L--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT 359 (754)
T ss_pred c--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCC
Confidence 2 1345555555555444 22222 244555555555443
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.74 E-value=1.4e-17 Score=177.15 Aligned_cols=159 Identities=22% Similarity=0.347 Sum_probs=78.4
Q ss_pred ccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccc
Q 043523 297 IRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNL 376 (650)
Q Consensus 297 L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 376 (650)
...++++++.++......+..++.|++++|+++.+|..++ .+|+.|++++|.+.. +|..+. .+|+.|++++|.+
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L 253 (754)
T PRK15370 180 KTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTS-IPATLP--DTIQEMELSINRI 253 (754)
T ss_pred ceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCcccc-CChhhh--ccccEEECcCCcc
Confidence 4556666666554433344566666666666666665442 356666666665542 333322 2455556665555
Q ss_pred cccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccc
Q 043523 377 SGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFP 456 (650)
Q Consensus 377 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 456 (650)
. .+|..+. .+|+.|++++|++. .++.. +. ++|+.|++++|+++. +|..+. ++|+.|++++|++.. .|
T Consensus 254 ~-~LP~~l~----s~L~~L~Ls~N~L~-~LP~~-l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP 320 (754)
T PRK15370 254 T-ELPERLP----SALQSLDLFHNKIS-CLPEN-LP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LP 320 (754)
T ss_pred C-cCChhHh----CCCCEEECcCCccC-ccccc-cC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CC
Confidence 4 3443332 14555555555554 33332 11 245555555555552 232221 245555555555554 22
Q ss_pred hhhhcCCCCCeEEccCcccc
Q 043523 457 CWLGNASSLQVLVLQSNNFS 476 (650)
Q Consensus 457 ~~~~~~~~L~~L~l~~n~~~ 476 (650)
..+ .++|++|++++|.++
T Consensus 321 ~~l--~~sL~~L~Ls~N~Lt 338 (754)
T PRK15370 321 ETL--PPGLKTLEAGENALT 338 (754)
T ss_pred ccc--cccceeccccCCccc
Confidence 211 245555555555544
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=2e-18 Score=171.59 Aligned_cols=260 Identities=19% Similarity=0.184 Sum_probs=158.8
Q ss_pred cCCccEEEccCCccccc----ccccccCCCcccEEECcCccccc------cCChhhhhccccCccEEEccCccCCCcCCC
Q 043523 339 MSETEYFFAANNSLVGV----IPESVCKGIYFQVLDLSNNNLSG------TIPACLIAQSETTLGVLNLGRNNLNGTLSD 408 (650)
Q Consensus 339 ~~~l~~l~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 408 (650)
...++.+.+.++.+.+. ++..+...++++.++++++.+.. .++..+.. .++|++|++++|.+.+..+.
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK--GCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh--cCceeEEEccCCCCChhHHH
Confidence 45566666666655332 23344455567777777665541 11122222 34777777777776532222
Q ss_pred cccCCC---CCccEEEcCCCccccc----cchhcccC-CCCCEEeCCCCcccc----ccchhhhcCCCCCeEEccCcccc
Q 043523 409 TIFPRN---CGLQILDLGGNQLQGV----VPKSLANC-NMLQVLDLKNNHISD----NFPCWLGNASSLQVLVLQSNNFS 476 (650)
Q Consensus 409 ~~~~~l---~~L~~L~ls~~~i~~~----~~~~~~~l-~~L~~L~Ls~n~l~~----~~~~~~~~~~~L~~L~l~~n~~~ 476 (650)
. +..+ ++|++|++++|++.+. ...++..+ ++|++|++++|.+.. ..+..+..+++|++|++++|.+.
T Consensus 100 ~-~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 100 V-LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred H-HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 2 3333 3488888888876632 22344555 788888888888773 22344556778888888888776
Q ss_pred eec--CCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhh
Q 043523 477 GHI--SCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETM 554 (650)
Q Consensus 477 ~~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 554 (650)
+.. .+...+..+++|++|++++|.+.+....... .
T Consensus 179 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~-------------------------------------------~ 215 (319)
T cd00116 179 DAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALA-------------------------------------------E 215 (319)
T ss_pred hHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHH-------------------------------------------H
Confidence 321 0122334456888888888876532111110 0
Q ss_pred cccCCCcccEEeCCCCccccCCCcccc-----CCcCCCEEeCccccCcc----cCCcCccCCCCCCeeeCCCCcCCcc--
Q 043523 555 LLKVPNIFTSIDFSSNNFEGPIPEEMG-----RFKSLYALNMSHNALTG----SIPSSFGNLKQIESLDLSMNNLSGK-- 623 (650)
Q Consensus 555 ~~~~~~~l~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~ls~n~i~~----~~~~~~~~l~~L~~L~l~~n~i~~~-- 623 (650)
....+++|++|++++|.+.+.....+. ..+.|+.|++++|.+++ .....+..+++|+++++++|.++..
T Consensus 216 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~ 295 (319)
T cd00116 216 TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGA 295 (319)
T ss_pred HhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHH
Confidence 113467788888888887753332222 23799999999998873 2334556678999999999999854
Q ss_pred --CCccccCC-CCCCeEEccCCcC
Q 043523 624 --IPAQLASL-NFLSVLNLSYNNL 644 (650)
Q Consensus 624 --~~~~l~~l-~~L~~L~l~~n~~ 644 (650)
....+... +.|+.+++.+|++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 296 QLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHHhhcCCchhhcccCCCCC
Confidence 44556666 7899999998875
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.67 E-value=1e-17 Score=166.49 Aligned_cols=260 Identities=25% Similarity=0.237 Sum_probs=177.8
Q ss_pred EEccCCccc-ccccccccCCCcccEEECcCccccccCChhhh--hccccCccEEEccCccCCC--c---CCCcccCCCCC
Q 043523 345 FFAANNSLV-GVIPESVCKGIYFQVLDLSNNNLSGTIPACLI--AQSETTLGVLNLGRNNLNG--T---LSDTIFPRNCG 416 (650)
Q Consensus 345 l~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~--~---~~~~~~~~l~~ 416 (650)
+++..+.+. +.....+..+..|+.++++++.++......+. ....+.+++++++++.+.. . .....+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 444455554 23334555667799999999988643221121 1122369999999987652 1 01123667889
Q ss_pred ccEEEcCCCccccccchhcccCCC---CCEEeCCCCcccccc----chhhhcC-CCCCeEEccCcccceec--CCCCCCC
Q 043523 417 LQILDLGGNQLQGVVPKSLANCNM---LQVLDLKNNHISDNF----PCWLGNA-SSLQVLVLQSNNFSGHI--SCPRNNV 486 (650)
Q Consensus 417 L~~L~ls~~~i~~~~~~~~~~l~~---L~~L~Ls~n~l~~~~----~~~~~~~-~~L~~L~l~~n~~~~~~--~~~~~~~ 486 (650)
|+.|++++|.+....+..+..+.. |++|++++|++.+.. ...+..+ ++|++|++++|.++... .+...+.
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 162 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR 162 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence 999999999987666666655555 999999999988422 2344556 89999999999987321 1234456
Q ss_pred CCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEe
Q 043523 487 SWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSID 566 (650)
Q Consensus 487 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 566 (650)
.++.|++|++++|.+.+......... ....+.|+.|+
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~-------------------------------------------l~~~~~L~~L~ 199 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEG-------------------------------------------LKANCNLEVLD 199 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHH-------------------------------------------HHhCCCCCEEe
Confidence 67889999999998764211111111 11347899999
Q ss_pred CCCCccccCC----CccccCCcCCCEEeCccccCcccCCcCcc-----CCCCCCeeeCCCCcCCc----cCCccccCCCC
Q 043523 567 FSSNNFEGPI----PEEMGRFKSLYALNMSHNALTGSIPSSFG-----NLKQIESLDLSMNNLSG----KIPAQLASLNF 633 (650)
Q Consensus 567 l~~~~~~~~~----~~~~~~l~~L~~L~ls~n~i~~~~~~~~~-----~l~~L~~L~l~~n~i~~----~~~~~l~~l~~ 633 (650)
+++|.+.+.. ...+..+++|+.|++++|.+++.....+. ..+.|+.|++++|.++. ...+.+..+++
T Consensus 200 L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~ 279 (319)
T cd00116 200 LNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKES 279 (319)
T ss_pred ccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCC
Confidence 9999986443 34566788999999999999863333322 24799999999999973 24456777799
Q ss_pred CCeEEccCCcCccc
Q 043523 634 LSVLNLSYNNLVGK 647 (650)
Q Consensus 634 L~~L~l~~n~~~~~ 647 (650)
|+.+++++|.++.+
T Consensus 280 L~~l~l~~N~l~~~ 293 (319)
T cd00116 280 LLELDLRGNKFGEE 293 (319)
T ss_pred ccEEECCCCCCcHH
Confidence 99999999999853
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=1.1e-16 Score=130.96 Aligned_cols=163 Identities=25% Similarity=0.359 Sum_probs=114.8
Q ss_pred CCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEccCCcccccCCccccCCCcC
Q 043523 40 NFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLK 119 (650)
Q Consensus 40 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~ 119 (650)
.+..+.+++.|.|++|+++ .+|..++.+.+|++|++.+|++. .+|..++.+++|++|+++-|++...+.+++.+|.|+
T Consensus 28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALE 105 (264)
T ss_pred cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcCccccCCCchhh
Confidence 3344566777788888877 66777788888888888888887 777778888888888888777776777788888888
Q ss_pred EEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhcCCCCccEEEccC
Q 043523 120 YLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSG 199 (650)
Q Consensus 120 ~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 199 (650)
.||+.+|.+.+......|-.++.|+.|++++|.++ ..|..++.+.+|+.|.++.|.+.....++.. +..|++|.+.+
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~--lt~lrelhiqg 182 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGD--LTRLRELHIQG 182 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHH--HHHHHHHhccc
Confidence 88888777765444333667778888888888877 6677777788888887777766533333222 34456666666
Q ss_pred CcCCCCCch
Q 043523 200 NRLEGPVPI 208 (650)
Q Consensus 200 ~~l~~~~~~ 208 (650)
|+++ .+|.
T Consensus 183 nrl~-vlpp 190 (264)
T KOG0617|consen 183 NRLT-VLPP 190 (264)
T ss_pred ceee-ecCh
Confidence 6655 4443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=1.6e-16 Score=129.88 Aligned_cols=162 Identities=25% Similarity=0.354 Sum_probs=140.9
Q ss_pred CCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEE
Q 043523 19 QVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHM 98 (650)
Q Consensus 19 ~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L 98 (650)
+....+.|-||+|++ ...++.++.+++|+.|++.+|.+. .+|.+++.++.|++|++.-|++. .+|..|+.++.|++|
T Consensus 31 ~~s~ITrLtLSHNKl-~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKL-TVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCce-eecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 456778889999998 456678999999999999999998 88999999999999999999998 899999999999999
Q ss_pred EccCCcccc--cCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCc
Q 043523 99 DFSSNHFSG--HIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQ 176 (650)
Q Consensus 99 ~l~~~~i~~--~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 176 (650)
|++.|++.+ .+..++.+..|+.|.+++|.+. .++.+ .+++++|+.|.+..|.+- ..|..++.+..|++|.+.+|+
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~d-vg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPD-VGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChh-hhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence 999998865 5557888899999999999886 66777 799999999999999888 678889999999999999999
Q ss_pred CCCCCchhhh
Q 043523 177 FENQLPEISN 186 (650)
Q Consensus 177 ~~~~~~~~~~ 186 (650)
++...|+...
T Consensus 185 l~vlppel~~ 194 (264)
T KOG0617|consen 185 LTVLPPELAN 194 (264)
T ss_pred eeecChhhhh
Confidence 9866666543
No 23
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=3.5e-12 Score=120.61 Aligned_cols=209 Identities=22% Similarity=0.231 Sum_probs=144.2
Q ss_pred cCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccc--cchhcccCCCCCEEeCCCCccccccch-hhhcCCCCC
Q 043523 390 TTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGV--VPKSLANCNMLQVLDLKNNHISDNFPC-WLGNASSLQ 466 (650)
Q Consensus 390 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~L~ 466 (650)
.+|+.+.+.++.+...........|++++.||++.|-+..- ...-.+++|+|+.|+|+.|++..-... .-..++.|+
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 47888888888765333324567788888888888865422 334456788888888888887752211 122478888
Q ss_pred eEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEE
Q 043523 467 VLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTV 546 (650)
Q Consensus 467 ~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 546 (650)
+|.+++|.++.. .+...+..||+|+.|++.+|....
T Consensus 201 ~L~l~~CGls~k-~V~~~~~~fPsl~~L~L~~N~~~~------------------------------------------- 236 (505)
T KOG3207|consen 201 QLVLNSCGLSWK-DVQWILLTFPSLEVLYLEANEIIL------------------------------------------- 236 (505)
T ss_pred eEEeccCCCCHH-HHHHHHHhCCcHHHhhhhcccccc-------------------------------------------
Confidence 888888887622 124456678888888888884211
Q ss_pred eeccchhhcccCCCcccEEeCCCCccccCC-CccccCCcCCCEEeCccccCccc-CCcC-----ccCCCCCCeeeCCCCc
Q 043523 547 TVKGVETMLLKVPNIFTSIDFSSNNFEGPI-PEEMGRFKSLYALNMSHNALTGS-IPSS-----FGNLKQIESLDLSMNN 619 (650)
Q Consensus 547 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~-~~~~~~l~~L~~L~ls~n~i~~~-~~~~-----~~~l~~L~~L~l~~n~ 619 (650)
+.....+.++.|+.|||++|.+.... ....+.++.|+.|+++.|.+.+. .|++ ...+++|++|++..|+
T Consensus 237 ----~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 237 ----IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred ----eecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence 11122245777888999999887544 24677889999999999998863 3333 3567899999999999
Q ss_pred CCcc-CCccccCCCCCCeEEccCCcCcc
Q 043523 620 LSGK-IPAQLASLNFLSVLNLSYNNLVG 646 (650)
Q Consensus 620 i~~~-~~~~l~~l~~L~~L~l~~n~~~~ 646 (650)
|.+- .-..+..+++|+.|.+-.|+++.
T Consensus 313 I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 313 IRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cccccccchhhccchhhhhhcccccccc
Confidence 9642 23456677888888888888764
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=2.1e-12 Score=122.00 Aligned_cols=212 Identities=19% Similarity=0.157 Sum_probs=135.8
Q ss_pred CCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCC-CcccCCCCCccEEEcCCCccccccch-hcccCC
Q 043523 362 KGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLS-DTIFPRNCGLQILDLGGNQLQGVVPK-SLANCN 439 (650)
Q Consensus 362 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~ls~~~i~~~~~~-~~~~l~ 439 (650)
++..|++..+.++.+...... -....++.++.||+++|-+..-.+ ......+++|+.|+++.|++..-..+ .-..++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~-~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIE-EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccchh-hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 566788888888877533322 122223488999999886552111 12355678899999999887622211 122467
Q ss_pred CCCEEeCCCCccccccc-hhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHh
Q 043523 440 MLQVLDLKNNHISDNFP-CWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMV 518 (650)
Q Consensus 440 ~L~~L~Ls~n~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~ 518 (650)
+|+.|.|+.|.+.--.. .....+|+|+.|++..|...... .....-+..|++|||++|++.+.....
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~--~~~~~i~~~L~~LdLs~N~li~~~~~~---------- 265 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIK--ATSTKILQTLQELDLSNNNLIDFDQGY---------- 265 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccccee--cchhhhhhHHhhccccCCccccccccc----------
Confidence 88899999998875332 23456899999999988532222 233444577888999888876432211
Q ss_pred hhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccc------cCCcCCCEEeCc
Q 043523 519 AETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEM------GRFKSLYALNMS 592 (650)
Q Consensus 519 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~------~~l~~L~~L~ls 592 (650)
....+|.|+.|.++.+.+..+..... ..+++|+.|++.
T Consensus 266 ------------------------------------~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~ 309 (505)
T KOG3207|consen 266 ------------------------------------KVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNIS 309 (505)
T ss_pred ------------------------------------ccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecc
Confidence 11356778888888888876544333 457889999999
Q ss_pred cccCccc-CCcCccCCCCCCeeeCCCCcCCc
Q 043523 593 HNALTGS-IPSSFGNLKQIESLDLSMNNLSG 622 (650)
Q Consensus 593 ~n~i~~~-~~~~~~~l~~L~~L~l~~n~i~~ 622 (650)
.|+|.+. .-..+..+++|+.|.+..|.+..
T Consensus 310 ~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 310 ENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cCccccccccchhhccchhhhhhcccccccc
Confidence 9988631 11334556777888888887764
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.21 E-value=2.2e-12 Score=118.54 Aligned_cols=88 Identities=23% Similarity=0.332 Sum_probs=40.6
Q ss_pred CCccEEEcCCCccccc----cchhcccCCCCCEEeCCCCccccc----cchhhhcCCCCCeEEccCcccceec--CCCCC
Q 043523 415 CGLQILDLGGNQLQGV----VPKSLANCNMLQVLDLKNNHISDN----FPCWLGNASSLQVLVLQSNNFSGHI--SCPRN 484 (650)
Q Consensus 415 ~~L~~L~ls~~~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~ 484 (650)
+.|+++....|++... +...|+.++.|+++.++.|.|..- ....+..|+.|+.|+|+.|-++... .+...
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 3455555555554322 223344455555555555544431 1223444555555555555554222 12344
Q ss_pred CCCCCCCCeeeCCCcccc
Q 043523 485 NVSWPLLQIVDLASNKFS 502 (650)
Q Consensus 485 ~~~~~~L~~L~l~~n~~~ 502 (650)
+..|++|++|++++|-+.
T Consensus 237 L~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLE 254 (382)
T ss_pred hcccchheeecccccccc
Confidence 445555555555555443
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.20 E-value=5.6e-13 Score=122.40 Aligned_cols=113 Identities=25% Similarity=0.302 Sum_probs=63.7
Q ss_pred cCccEEEccCccCCCcCC---CcccCCCCCccEEEcCCCccccc----cchhcccCCCCCEEeCCCCcccccc----chh
Q 043523 390 TTLGVLNLGRNNLNGTLS---DTIFPRNCGLQILDLGGNQLQGV----VPKSLANCNMLQVLDLKNNHISDNF----PCW 458 (650)
Q Consensus 390 ~~L~~L~l~~~~~~~~~~---~~~~~~l~~L~~L~ls~~~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~ 458 (650)
+.|+++...+|.+.+... ...|...+.|+.+.+.+|.|... ...++..|++|++|||.+|-++... ...
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 367777777776543221 12355666777777777765432 2345666777777777777665422 234
Q ss_pred hhcCCCCCeEEccCcccceecC--CCC-CCCCCCCCCeeeCCCcccc
Q 043523 459 LGNASSLQVLVLQSNNFSGHIS--CPR-NNVSWPLLQIVDLASNKFS 502 (650)
Q Consensus 459 ~~~~~~L~~L~l~~n~~~~~~~--~~~-~~~~~~~L~~L~l~~n~~~ 502 (650)
+...+.|+.|++++|.+.+... +.. .-...|.|+++.+.+|.++
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 4456667777777777654321 011 1123466666666666654
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.20 E-value=2.2e-11 Score=105.30 Aligned_cols=108 Identities=31% Similarity=0.355 Sum_probs=43.7
Q ss_pred CccEEEccCccCCCcCCCcccC-CCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEE
Q 043523 391 TLGVLNLGRNNLNGTLSDTIFP-RNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLV 469 (650)
Q Consensus 391 ~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ 469 (650)
++++|++.+|.|. .+.. +. .+.+|+.|++++|.|+.. +++..++.|++|++++|+|+.+.+.....+|+|++|+
T Consensus 20 ~~~~L~L~~n~I~-~Ie~--L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQIS-TIEN--LGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp -----------------S----TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccc-cccc--hhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 6777888887776 4432 33 567899999999998843 4678889999999999999885443334689999999
Q ss_pred ccCcccceecCCCCCCCCCCCCCeeeCCCcccccc
Q 043523 470 LQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGR 504 (650)
Q Consensus 470 l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 504 (650)
+++|+|.+... ...+..+++|+.|++.+||++..
T Consensus 95 L~~N~I~~l~~-l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 95 LSNNKISDLNE-LEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp -TTS---SCCC-CGGGGG-TT--EEE-TT-GGGGS
T ss_pred CcCCcCCChHH-hHHHHcCCCcceeeccCCcccch
Confidence 99999976543 45667889999999999998744
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.14 E-value=3.5e-11 Score=104.08 Aligned_cols=107 Identities=23% Similarity=0.261 Sum_probs=28.8
Q ss_pred cCCCCCCEEeCCCCCCCCCCCCCCC-CCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCc-cCCCCC
Q 043523 18 LQVPTLETLDLSENQLLQGSLPNFP-KNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSM-ANLTQL 95 (650)
Q Consensus 18 ~~~~~L~~L~ls~~~i~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l-~~l~~L 95 (650)
.+..+++.|+|++|.|..+ +.+. .+.+|++|++++|.++. + +.+..+++|++|++++|+|+. ....+ ..+++|
T Consensus 16 ~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT-
T ss_pred ccccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCc-cccchHHhCCcC
Confidence 4444566667777666443 2343 35666666666666662 2 245566666666666666663 22223 346666
Q ss_pred cEEEccCCcccccC--CccccCCCcCEEeCCCCcCc
Q 043523 96 FHMDFSSNHFSGHI--PSLHKSRNLKYLDLSFNNLS 129 (650)
Q Consensus 96 ~~L~l~~~~i~~~~--~~~~~~~~L~~L~l~~~~l~ 129 (650)
++|++++|+|.... ..+..+++|++|++.+|++.
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 66666666665322 23444566666666666554
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.07 E-value=3.2e-11 Score=108.35 Aligned_cols=59 Identities=31% Similarity=0.354 Sum_probs=37.5
Q ss_pred CCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCccc
Q 043523 438 CNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKF 501 (650)
Q Consensus 438 l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 501 (650)
.+.|+++|||+|.|+. +.....-.|.++.|+++.|.+.... .+..+++|..||+++|.+
T Consensus 283 Wq~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~v~----nLa~L~~L~~LDLS~N~L 341 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRTVQ----NLAELPQLQLLDLSGNLL 341 (490)
T ss_pred Hhhhhhccccccchhh-hhhhhhhccceeEEeccccceeeeh----hhhhcccceEeecccchh
Confidence 3567777777777776 3344555677777777777776543 245556666666666654
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.07 E-value=2.1e-10 Score=117.26 Aligned_cols=122 Identities=34% Similarity=0.430 Sum_probs=61.9
Q ss_pred EEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCC-CCccEEEcCCCccccccchhcccCCCCCEEeC
Q 043523 368 VLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRN-CGLQILDLGGNQLQGVVPKSLANCNMLQVLDL 446 (650)
Q Consensus 368 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l-~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L 446 (650)
.++...+.+.......... +.++.+++.++.+. .++.. .... .+|+.|++++|++. .++..+..+++|+.|++
T Consensus 97 ~l~~~~~~~~~~~~~~~~~---~~l~~L~l~~n~i~-~i~~~-~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l 170 (394)
T COG4886 97 SLDLNLNRLRSNISELLEL---TNLTSLDLDNNNIT-DIPPL-IGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDL 170 (394)
T ss_pred eeeccccccccCchhhhcc---cceeEEecCCcccc-cCccc-cccchhhcccccccccchh-hhhhhhhcccccccccc
Confidence 4666666553222222111 25666666666665 33332 2222 25666666666665 33344556666666666
Q ss_pred CCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCc
Q 043523 447 KNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASN 499 (650)
Q Consensus 447 s~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n 499 (650)
++|++.+ .+......+.|+.|++++|++... +........|+++.+++|
T Consensus 171 ~~N~l~~-l~~~~~~~~~L~~L~ls~N~i~~l---~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 171 SFNDLSD-LPKLLSNLSNLNNLDLSGNKISDL---PPEIELLSALEELDLSNN 219 (394)
T ss_pred CCchhhh-hhhhhhhhhhhhheeccCCccccC---chhhhhhhhhhhhhhcCC
Confidence 6666665 333333566666666666665532 111122233555555555
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.02 E-value=8.6e-12 Score=121.82 Aligned_cols=167 Identities=26% Similarity=0.320 Sum_probs=85.1
Q ss_pred ecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccc
Q 043523 3 DLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFT 82 (650)
Q Consensus 3 ~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~ 82 (650)
|++.|++. .+|..+..|..|+.+.|++|.+ ...+.++..+..|.+++|+.|.+. .+|..++.|+ |++|-+++|+++
T Consensus 81 DlsrNR~~-elp~~~~~f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~ 156 (722)
T KOG0532|consen 81 DLSRNRFS-ELPEEACAFVSLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT 156 (722)
T ss_pred hccccccc-cCchHHHHHHHHHHHHHHhccc-eecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc
Confidence 44455554 4444455555555555555554 333444455555555555555554 4455444443 455555555555
Q ss_pred cCCCcCccCCCCCcEEEccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhcc
Q 043523 83 GPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLF 162 (650)
Q Consensus 83 ~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 162 (650)
.+|..++....|.+||.+.|.+...++.+..+.+|+.|++..|++. .++.+ +. .-.|..||++.|++. .+|..|.
T Consensus 157 -~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~E-l~-~LpLi~lDfScNkis-~iPv~fr 231 (722)
T KOG0532|consen 157 -SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEE-LC-SLPLIRLDFSCNKIS-YLPVDFR 231 (722)
T ss_pred -cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHH-Hh-CCceeeeecccCcee-ecchhhh
Confidence 4455555555555555555555555555555555555555555544 33333 22 233455555555555 4455555
Q ss_pred CCCCCCEEEccCCcCC
Q 043523 163 LLPNLETLWLSNNQFE 178 (650)
Q Consensus 163 ~l~~L~~L~l~~~~~~ 178 (650)
.+..|++|-|.+|.+.
T Consensus 232 ~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 232 KMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhheeeeeccCCCC
Confidence 5555555555555554
No 32
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.99 E-value=2.7e-10 Score=80.86 Aligned_cols=61 Identities=46% Similarity=0.608 Sum_probs=47.3
Q ss_pred cCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCcC
Q 043523 584 KSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 644 (650)
Q Consensus 584 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~ 644 (650)
++|++|++++|+++...+++|..+++|++|++++|.++.+.++.|..+++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677778888877766667777788888888888888777777788888888888887764
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.97 E-value=5.5e-11 Score=116.31 Aligned_cols=166 Identities=27% Similarity=0.377 Sum_probs=142.3
Q ss_pred eecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCcc
Q 043523 2 LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNF 81 (650)
Q Consensus 2 L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l 81 (650)
+.++.|.|. ..|.++.++..|+.++|+.|++ ...+..++.|+ |+.|.+++|+++ .+|+.++..+.|..|+.++|.+
T Consensus 103 liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei 178 (722)
T KOG0532|consen 103 LILYHNCIR-TIPEAICNLEALTFLDLSSNQL-SHLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEI 178 (722)
T ss_pred HHHHhccce-ecchhhhhhhHHHHhhhccchh-hcCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhh
Confidence 346677777 7889999999999999999998 56667788887 999999999998 8999999999999999999999
Q ss_pred ccCCCcCccCCCCCcEEEccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhc
Q 043523 82 TGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSL 161 (650)
Q Consensus 82 ~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 161 (650)
. .+|.-+..+.+|+.|++..|++..+++.+. .-.|..||++.|++. .++.. |.+|+.|++|-|.+|.+++ .|..+
T Consensus 179 ~-slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis-~iPv~-fr~m~~Lq~l~LenNPLqS-PPAqI 253 (722)
T KOG0532|consen 179 Q-SLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKIS-YLPVD-FRKMRHLQVLQLENNPLQS-PPAQI 253 (722)
T ss_pred h-hchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCcee-ecchh-hhhhhhheeeeeccCCCCC-ChHHH
Confidence 9 888889999999999999999998888888 567999999999998 77887 8999999999999999984 44444
Q ss_pred cC---CCCCCEEEccCCc
Q 043523 162 FL---LPNLETLWLSNNQ 176 (650)
Q Consensus 162 ~~---l~~L~~L~l~~~~ 176 (650)
+. .+-.++|+..-|+
T Consensus 254 C~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 254 CEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred Hhccceeeeeeecchhcc
Confidence 43 3344667776663
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.94 E-value=1.2e-09 Score=111.64 Aligned_cols=194 Identities=34% Similarity=0.407 Sum_probs=127.0
Q ss_pred EEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCC-CCcEEEcCCCccccCCCcCccCCCCCcEEEccCC
Q 043523 25 TLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLE-NLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSN 103 (650)
Q Consensus 25 ~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~-~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~ 103 (650)
.++++.+.+ ......+..+..++.|++.++.++ .++....... +|+.|++++|++. ..|..++.+++|+.|++++|
T Consensus 97 ~l~~~~~~~-~~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRL-RSNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeecccccc-ccCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 466666665 223334445567777777777777 5566566663 7777788777777 55566777777888888877
Q ss_pred cccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCch
Q 043523 104 HFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPE 183 (650)
Q Consensus 104 ~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 183 (650)
++...++.....+.|+.|++++|.+. .++.. .+....|+++.+++|.+. ..+..+..+.++..+.+.+|++.....
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~-~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~- 249 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPE-IELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPE- 249 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCCccc-cCchh-hhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccc-
Confidence 77766665556777777888777776 44443 345556777777777533 344566667777777777776653211
Q ss_pred hhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCcccc
Q 043523 184 ISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSR 229 (650)
Q Consensus 184 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~ 229 (650)
....+..++.+++++|.+. .++. ++...+++.++++++.+..
T Consensus 250 -~~~~l~~l~~L~~s~n~i~-~i~~--~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 250 -SIGNLSNLETLDLSNNQIS-SISS--LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred -hhccccccceecccccccc-cccc--ccccCccCEEeccCccccc
Confidence 1223455778888887777 4443 4677788888888876653
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.92 E-value=1.1e-09 Score=77.59 Aligned_cols=59 Identities=37% Similarity=0.515 Sum_probs=33.3
Q ss_pred CccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcc
Q 043523 416 GLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNN 474 (650)
Q Consensus 416 ~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~ 474 (650)
+|++|++++|+++...+..|..+++|++|++++|++..+.+..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555554444555555555555555555555555555555555555555554
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.89 E-value=3.8e-10 Score=101.60 Aligned_cols=229 Identities=23% Similarity=0.238 Sum_probs=128.5
Q ss_pred cccCCCCCCEEeCCCCCC-------CCCC-CCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCc
Q 043523 16 KILQVPTLETLDLSENQL-------LQGS-LPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPP 87 (650)
Q Consensus 16 ~~~~~~~L~~L~ls~~~i-------~~~~-~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~ 87 (650)
.+.-+.+|..|..++..- .... +-.+.-+++|+.+.++.+.-. .+.+-...-|.|+++...+..+.. .|.
T Consensus 177 ildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~~-~~~ 254 (490)
T KOG1259|consen 177 VLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQD-VPS 254 (490)
T ss_pred HHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchh-heeceeecCchhheeeeecccccc-ccc
Confidence 344456677777665431 0000 012223677788888777544 333333345677777777665541 111
Q ss_pred CccCCCCCcEEEccCCc---ccc-cCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccC
Q 043523 88 SMANLTQLFHMDFSSNH---FSG-HIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFL 163 (650)
Q Consensus 88 ~l~~l~~L~~L~l~~~~---i~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 163 (650)
+--...+ -|..... ..+ ....+..-..|+++|+++|.|+ .+..+ ..-.++++.|++++|.+..+ +.+..
T Consensus 255 -l~pe~~~--~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDES-vKL~Pkir~L~lS~N~i~~v--~nLa~ 327 (490)
T KOG1259|consen 255 -LLPETIL--ADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDES-VKLAPKLRRLILSQNRIRTV--QNLAE 327 (490)
T ss_pred -ccchhhh--cCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhhh-hhhccceeEEeccccceeee--hhhhh
Confidence 1001111 1111110 000 0011112256677777777776 45555 56667777777777776643 23667
Q ss_pred CCCCCEEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCCC
Q 043523 164 LPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPIL 243 (650)
Q Consensus 164 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l 243 (650)
+++|+.||+++|.++. ...| ...+.+.+.|.+++|.+.+ +. ++ ..+-+|..|++++|++..++ .+..+
T Consensus 328 L~~L~~LDLS~N~Ls~-~~Gw-h~KLGNIKtL~La~N~iE~-LS-GL-~KLYSLvnLDl~~N~Ie~ld-------eV~~I 395 (490)
T KOG1259|consen 328 LPQLQLLDLSGNLLAE-CVGW-HLKLGNIKTLKLAQNKIET-LS-GL-RKLYSLVNLDLSSNQIEELD-------EVNHI 395 (490)
T ss_pred cccceEeecccchhHh-hhhh-HhhhcCEeeeehhhhhHhh-hh-hh-HhhhhheeccccccchhhHH-------Hhccc
Confidence 7777777777776652 2222 2235667778888777652 21 22 56677888889888887553 34447
Q ss_pred CCCCCCcEEEccCCcCCCCCChh
Q 043523 244 KNQSQLSGLDISNNQIPGEIPNW 266 (650)
Q Consensus 244 ~~~~~L~~L~l~~~~i~~~~~~~ 266 (650)
+++|.|+++.+.+|.+. .+++.
T Consensus 396 G~LPCLE~l~L~~NPl~-~~vdY 417 (490)
T KOG1259|consen 396 GNLPCLETLRLTGNPLA-GSVDY 417 (490)
T ss_pred ccccHHHHHhhcCCCcc-ccchH
Confidence 88889999999999887 44543
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.88 E-value=1.8e-09 Score=117.61 Aligned_cols=128 Identities=20% Similarity=0.284 Sum_probs=63.9
Q ss_pred CCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCc--CcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEE
Q 043523 21 PTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTG--FSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHM 98 (650)
Q Consensus 21 ~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~--~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L 98 (650)
...|.+.+-++.+.. ...=..++.|++|-+.+|. +....++.|..++.|++|+|++|.-.+.+|..++++.+||+|
T Consensus 523 ~~~rr~s~~~~~~~~--~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEH--IAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchhh--ccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 445555555554411 1112223455555555553 332222335555566666665554444555555556666666
Q ss_pred EccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCC
Q 043523 99 DFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHN 151 (650)
Q Consensus 99 ~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 151 (650)
+++++.+..+|.++.++..|.+|++..+.....++.. ...+++|++|.+...
T Consensus 601 ~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i-~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 601 DLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGI-LLELQSLRVLRLPRS 652 (889)
T ss_pred cccCCCccccchHHHHHHhhheeccccccccccccch-hhhcccccEEEeecc
Confidence 6665555555555555555666655555433222221 344555665555544
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.86 E-value=3.7e-09 Score=112.95 Aligned_cols=90 Identities=34% Similarity=0.712 Sum_probs=80.3
Q ss_pred cccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEcc
Q 043523 561 IFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLS 640 (650)
Q Consensus 561 ~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~ 640 (650)
.++.|+|++|.+.+..+..+..+++|+.|+|++|.+++.+|..++.+++|+.|++++|++++.+|+.+.++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 46788999999988888888899999999999999988888888999999999999999998889899999999999999
Q ss_pred CCcCcccCCC
Q 043523 641 YNNLVGKIPT 650 (650)
Q Consensus 641 ~n~~~~~~p~ 650 (650)
+|.++|.+|+
T Consensus 499 ~N~l~g~iP~ 508 (623)
T PLN03150 499 GNSLSGRVPA 508 (623)
T ss_pred CCcccccCCh
Confidence 9999998884
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.4e-10 Score=104.30 Aligned_cols=226 Identities=18% Similarity=0.164 Sum_probs=143.3
Q ss_pred CEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCC-CCCCCCCC-CCCcEEEcCCCcccc-CCCcCccCCCCCcEEEc
Q 043523 24 ETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGT-LPDSIGNL-ENLTWVEVRRCNFTG-PIPPSMANLTQLFHMDF 100 (650)
Q Consensus 24 ~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~-~~~~~~~l-~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~l 100 (650)
+++|+.+-.|.......+.. +.+.++.+...-+... +.+.+.-. ..|++++|++..|+. .+...+..|++|+.|.+
T Consensus 139 ~~lDl~~r~i~p~~l~~l~~-rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSl 217 (419)
T KOG2120|consen 139 QTLDLTGRNIHPDVLGRLLS-RGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSL 217 (419)
T ss_pred eeeccCCCccChhHHHHHHh-CCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccc
Confidence 56777777664443333333 5566777765443321 22222222 359999999988873 34456678999999999
Q ss_pred cCCccccc-CCccccCCCcCEEeCCCCc-CcccCChHHHhccccCCeEEccCCcCCCCcchh-cc-CCCCCCEEEccCCc
Q 043523 101 SSNHFSGH-IPSLHKSRNLKYLDLSFNN-LSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRS-LF-LLPNLETLWLSNNQ 176 (650)
Q Consensus 101 ~~~~i~~~-~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~-~l~~L~~L~l~~~~ 176 (650)
.++++.+. ...+.+..+|+.|+++++. ++.....-.++.|+.|..|++++|......... .. --++|+.|+++++.
T Consensus 218 Eg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r 297 (419)
T KOG2120|consen 218 EGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYR 297 (419)
T ss_pred cccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhH
Confidence 99988763 3467888999999999884 454444445789999999999999765332211 12 24678888888875
Q ss_pred CCCCCc--hhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEc
Q 043523 177 FENQLP--EISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDI 254 (650)
Q Consensus 177 ~~~~~~--~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l 254 (650)
-.-... +.....++++.+||+++|......-...|..++.|+.|.++.|..- .+..+-.+...|.|..|++
T Consensus 298 rnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i-------~p~~~~~l~s~psl~yLdv 370 (419)
T KOG2120|consen 298 RNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI-------IPETLLELNSKPSLVYLDV 370 (419)
T ss_pred hhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC-------ChHHeeeeccCcceEEEEe
Confidence 431111 2344568888888888876432333344567788888888877421 0112222666677777777
Q ss_pred cCC
Q 043523 255 SNN 257 (650)
Q Consensus 255 ~~~ 257 (650)
.++
T Consensus 371 ~g~ 373 (419)
T KOG2120|consen 371 FGC 373 (419)
T ss_pred ccc
Confidence 664
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.77 E-value=1.7e-09 Score=110.40 Aligned_cols=84 Identities=20% Similarity=0.220 Sum_probs=50.0
Q ss_pred ccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCc---cCCcc-ccCCCCCCeE
Q 043523 562 FTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG---KIPAQ-LASLNFLSVL 637 (650)
Q Consensus 562 l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~---~~~~~-l~~l~~L~~L 637 (650)
|+.+++++|.+.... ..+..+..+..+++++|++... +.+...+.+..+....+.+.. ..... ....+.++.+
T Consensus 234 L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (414)
T KOG0531|consen 234 LRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL 310 (414)
T ss_pred HHHHhcccCcccccc-ccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence 566677777765332 4456667777777777777632 234555666666666666552 12222 4556667777
Q ss_pred EccCCcCcccC
Q 043523 638 NLSYNNLVGKI 648 (650)
Q Consensus 638 ~l~~n~~~~~~ 648 (650)
.+.+|+.....
T Consensus 311 ~~~~~~~~~~~ 321 (414)
T KOG0531|consen 311 TLELNPIRKIS 321 (414)
T ss_pred ccccCcccccc
Confidence 77777665543
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.76 E-value=1.9e-08 Score=107.59 Aligned_cols=108 Identities=25% Similarity=0.409 Sum_probs=91.5
Q ss_pred CCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEcc
Q 043523 22 TLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFS 101 (650)
Q Consensus 22 ~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~ 101 (650)
.++.|+|++|.+....+..|..+++|++|+|++|.+.+.+|..++.+++|++|+|++|.+++..|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999876777788899999999999999998899999999999999999999999999999999999999999
Q ss_pred CCcccccCC-ccccC-CCcCEEeCCCCcCc
Q 043523 102 SNHFSGHIP-SLHKS-RNLKYLDLSFNNLS 129 (650)
Q Consensus 102 ~~~i~~~~~-~~~~~-~~L~~L~l~~~~l~ 129 (650)
+|.+.+..| .+... .++..+++.+|...
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccc
Confidence 999876555 44432 56678888888643
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.72 E-value=5.5e-08 Score=106.29 Aligned_cols=277 Identities=18% Similarity=0.180 Sum_probs=176.2
Q ss_pred CcCcccCCcccEEEeccCcCCC-CCCCCCCCccEEecCCCc--CCCCchhhhhccCCccEEEccCCcccccccccccCCC
Q 043523 288 LQEPYSISSIRLLDLHSNQLRG-NIPHMSTNTSYVDYSNNH--FTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGI 364 (650)
Q Consensus 288 l~~~~~l~~L~~L~l~~~~l~~-~~~~~~~~L~~L~l~~~~--i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~ 364 (650)
.+........+.+.+.++.+.. .....++.++.|-+..|. +..++..++..++.|..|++++|.-.+.+|..++.+-
T Consensus 516 ~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li 595 (889)
T KOG4658|consen 516 IPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV 595 (889)
T ss_pred cccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh
Confidence 3444445566777777766542 223344578888888886 7788888888899999999999888888999999999
Q ss_pred cccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCcc--ccccchhcccCCCCC
Q 043523 365 YFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQL--QGVVPKSLANCNMLQ 442 (650)
Q Consensus 365 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i--~~~~~~~~~~l~~L~ 442 (650)
+|+.|+++++.+. .+|..+.+.. .|.+|++..+.....+ ......+++|++|.+..-.. .......+.++.+|+
T Consensus 596 ~LryL~L~~t~I~-~LP~~l~~Lk--~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~ 671 (889)
T KOG4658|consen 596 HLRYLDLSDTGIS-HLPSGLGNLK--KLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLE 671 (889)
T ss_pred hhhcccccCCCcc-ccchHHHHHH--hhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchh
Confidence 9999999999988 8898888877 8999999988766444 44466789999999977642 222334456677777
Q ss_pred EEeCCCCccccccchhhhcCCCCC----eEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHH------HHh
Q 043523 443 VLDLKNNHISDNFPCWLGNASSLQ----VLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKW------LLT 512 (650)
Q Consensus 443 ~L~Ls~n~l~~~~~~~~~~~~~L~----~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~------~~~ 512 (650)
.+....... . ....+..++.|. .+.+.++...+ ....+..+.+|+.|.+.++.+..... .| ...
T Consensus 672 ~ls~~~~s~-~-~~e~l~~~~~L~~~~~~l~~~~~~~~~---~~~~~~~l~~L~~L~i~~~~~~e~~~-~~~~~~~~~~~ 745 (889)
T KOG4658|consen 672 NLSITISSV-L-LLEDLLGMTRLRSLLQSLSIEGCSKRT---LISSLGSLGNLEELSILDCGISEIVI-EWEESLIVLLC 745 (889)
T ss_pred hheeecchh-H-hHhhhhhhHHHHHHhHhhhhcccccce---eecccccccCcceEEEEcCCCchhhc-ccccccchhhh
Confidence 777755544 1 112233444444 33333333221 24556677889999998887753211 11 000
Q ss_pred HHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCc
Q 043523 513 MEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMS 592 (650)
Q Consensus 513 l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls 592 (650)
+..+.......+..++.+.+. ..+|+|+.|.+.++...+.+......+..+..+.+.
T Consensus 746 f~~l~~~~~~~~~~~r~l~~~-----------------------~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~ 802 (889)
T KOG4658|consen 746 FPNLSKVSILNCHMLRDLTWL-----------------------LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILP 802 (889)
T ss_pred HHHHHHHHhhccccccccchh-----------------------hccCcccEEEEecccccccCCCHHHHhhhcccEEec
Confidence 112222222222333333222 357888888888888766555555555556655555
Q ss_pred cccCc
Q 043523 593 HNALT 597 (650)
Q Consensus 593 ~n~i~ 597 (650)
.+.+.
T Consensus 803 f~~~~ 807 (889)
T KOG4658|consen 803 FNKLE 807 (889)
T ss_pred ccccc
Confidence 55444
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=4.5e-10 Score=101.11 Aligned_cols=198 Identities=18% Similarity=0.139 Sum_probs=126.6
Q ss_pred CccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCc-cccccc-hhhhcCCCCCeE
Q 043523 391 TLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNH-ISDNFP-CWLGNASSLQVL 468 (650)
Q Consensus 391 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~~~~L~~L 468 (650)
.|++||+++..++..-....+..|.+|+.|.+.++++.+-+...+++..+|+.|+|+.|. ++.... -.+.+|..|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 688888888877755555667778888888888888877777778888888888888864 443222 234668888888
Q ss_pred EccCcccceecCCCCCCCC-CCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEe
Q 043523 469 VLQSNNFSGHISCPRNNVS-WPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVT 547 (650)
Q Consensus 469 ~l~~n~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 547 (650)
+|+.|-...... .-.+.. -+.|+.|+++|+.-.-.. ..+
T Consensus 266 NlsWc~l~~~~V-tv~V~hise~l~~LNlsG~rrnl~~-----sh~---------------------------------- 305 (419)
T KOG2120|consen 266 NLSWCFLFTEKV-TVAVAHISETLTQLNLSGYRRNLQK-----SHL---------------------------------- 305 (419)
T ss_pred CchHhhccchhh-hHHHhhhchhhhhhhhhhhHhhhhh-----hHH----------------------------------
Confidence 888887664331 111111 256777888776421000 001
Q ss_pred eccchhhcccCCCcccEEeCCCCccccC-CCccccCCcCCCEEeCccccCcccCCcC---ccCCCCCCeeeCCCCcCCcc
Q 043523 548 VKGVETMLLKVPNIFTSIDFSSNNFEGP-IPEEMGRFKSLYALNMSHNALTGSIPSS---FGNLKQIESLDLSMNNLSGK 623 (650)
Q Consensus 548 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~-~~~~~~~l~~L~~L~ls~n~i~~~~~~~---~~~l~~L~~L~l~~n~i~~~ 623 (650)
......||++..|||+.|..... ....+..++.|++|.++.|... +|+. +...|+|.+||+.+|-=.+.
T Consensus 306 -----~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vsdt~ 378 (419)
T KOG2120|consen 306 -----STLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVSDTT 378 (419)
T ss_pred -----HHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccccCchH
Confidence 11223689999999998875422 2235677889999999999654 3433 45668899999988743322
Q ss_pred CCccccCCCCCC
Q 043523 624 IPAQLASLNFLS 635 (650)
Q Consensus 624 ~~~~l~~l~~L~ 635 (650)
..-....+++|+
T Consensus 379 mel~~e~~~~lk 390 (419)
T KOG2120|consen 379 MELLKEMLSHLK 390 (419)
T ss_pred HHHHHHhCcccc
Confidence 222223445444
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.68 E-value=3.3e-09 Score=108.33 Aligned_cols=76 Identities=30% Similarity=0.350 Sum_probs=45.8
Q ss_pred EeCCCCccccCCCccccCCcC--CCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCC
Q 043523 565 IDFSSNNFEGPIPEEMGRFKS--LYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYN 642 (650)
Q Consensus 565 L~l~~~~~~~~~~~~~~~l~~--L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n 642 (650)
+++..|.+..+. .+..+.. |+.+++++|++.. .+..+..+..+..|++..|.+... ..+...+.+..+....+
T Consensus 213 ~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~ 287 (414)
T KOG0531|consen 213 LSLLDNKISKLE--GLNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDN 287 (414)
T ss_pred hhcccccceecc--CcccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--ccccccchHHHhccCcc
Confidence 355556655322 2222233 7788888887773 324556677788888887777643 34566666666666666
Q ss_pred cCc
Q 043523 643 NLV 645 (650)
Q Consensus 643 ~~~ 645 (650)
++.
T Consensus 288 ~~~ 290 (414)
T KOG0531|consen 288 KLA 290 (414)
T ss_pred hhc
Confidence 654
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=1.7e-08 Score=91.13 Aligned_cols=83 Identities=23% Similarity=0.248 Sum_probs=53.2
Q ss_pred CCCcccEEeCCCCccccCC-CccccCCcCCCEEeCccccCcc-cCCcCccCCCCCCeeeCCCCcCCccCCc------ccc
Q 043523 558 VPNIFTSIDFSSNNFEGPI-PEEMGRFKSLYALNMSHNALTG-SIPSSFGNLKQIESLDLSMNNLSGKIPA------QLA 629 (650)
Q Consensus 558 ~~~~l~~L~l~~~~~~~~~-~~~~~~l~~L~~L~ls~n~i~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~------~l~ 629 (650)
.+|++..+-+..|.+.... .+....++.+..|+|+.++|.+ ...+++..+++|..|.++++.+...... .++
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIa 276 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIA 276 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEe
Confidence 4566666777777665432 2355566777778888887775 2335567778888888888877654332 346
Q ss_pred CCCCCCeEEcc
Q 043523 630 SLNFLSVLNLS 640 (650)
Q Consensus 630 ~l~~L~~L~l~ 640 (650)
.+++++.|+=+
T Consensus 277 RL~~v~vLNGs 287 (418)
T KOG2982|consen 277 RLTKVQVLNGS 287 (418)
T ss_pred eccceEEecCc
Confidence 67777777644
No 46
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.59 E-value=1.8e-09 Score=101.99 Aligned_cols=180 Identities=17% Similarity=0.106 Sum_probs=95.8
Q ss_pred CCCCccEEEcCCCc-ccccc-chhcccCCCCCEEeCCCCc-cccccchhh-hcCCCCCeEEccCcccceecCCCCCCCCC
Q 043523 413 RNCGLQILDLGGNQ-LQGVV-PKSLANCNMLQVLDLKNNH-ISDNFPCWL-GNASSLQVLVLQSNNFSGHISCPRNNVSW 488 (650)
Q Consensus 413 ~l~~L~~L~ls~~~-i~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 488 (650)
.+..+..+++..|. +++.. ...-..+..|++|+.+++. +++.....+ .++++|+.|.+..|+.-+..+......+|
T Consensus 266 ~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~ 345 (483)
T KOG4341|consen 266 YCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNC 345 (483)
T ss_pred cChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCC
Confidence 34445555555552 33332 1222346677777777753 333222233 34777777777777754444444455667
Q ss_pred CCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCC
Q 043523 489 PLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFS 568 (650)
Q Consensus 489 ~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~ 568 (650)
+.|+.+++.++...... .+. .....++.|+.+.++
T Consensus 346 ~~Le~l~~e~~~~~~d~---tL~------------------------------------------sls~~C~~lr~lsls 380 (483)
T KOG4341|consen 346 PHLERLDLEECGLITDG---TLA------------------------------------------SLSRNCPRLRVLSLS 380 (483)
T ss_pred hhhhhhcccccceehhh---hHh------------------------------------------hhccCCchhccCChh
Confidence 77777777776432111 000 011256666777777
Q ss_pred CCccccCC-----CccccCCcCCCEEeCccccCc-ccCCcCccCCCCCCeeeCCCCcC-Ccc-CCccccCCCCCCeE
Q 043523 569 SNNFEGPI-----PEEMGRFKSLYALNMSHNALT-GSIPSSFGNLKQIESLDLSMNNL-SGK-IPAQLASLNFLSVL 637 (650)
Q Consensus 569 ~~~~~~~~-----~~~~~~l~~L~~L~ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~i-~~~-~~~~l~~l~~L~~L 637 (650)
+|....-. ...-.....|+.+.+++++.+ +...+.+..+++|+.+++..|+- +.. +...-+++|++++.
T Consensus 381 hce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 381 HCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred hhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence 66543111 122344567777777777543 45556666677777777777743 222 22233455655543
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.55 E-value=3.6e-09 Score=100.03 Aligned_cols=110 Identities=16% Similarity=-0.007 Sum_probs=62.5
Q ss_pred cCCeEEccCCcCCCCc--chhccCCCCCCEEEccCCcCCCCC-chhhhcCCCCccEEEccCCc-CCCCCchhHhhcCCCC
Q 043523 142 NLNLVLLSHNSLNGSI--PRSLFLLPNLETLWLSNNQFENQL-PEISNVSSSVLFDLDLSGNR-LEGPVPISIIFELRNL 217 (650)
Q Consensus 142 ~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~l~~L 217 (650)
.|+.|.+.+++-.... -.....++++++|.+.++...... -.-....++.|+++++..|. +++..-..+...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 5666666666433221 123345777888877777532111 11233457888888888854 4433334455678899
Q ss_pred cEEeCCCCccccccccCCCCCCCCC-CCCCCCCcEEEccCCc
Q 043523 218 YTLDLSSNKFSRLRLASSKPRVIPI-LKNQSQLSGLDISNNQ 258 (650)
Q Consensus 218 ~~L~l~~~~~~~~~~~~~~~~~l~~-l~~~~~L~~L~l~~~~ 258 (650)
+.++++||.--+- ..+.. ..++..++.+...+|.
T Consensus 219 ~~lNlSwc~qi~~-------~gv~~~~rG~~~l~~~~~kGC~ 253 (483)
T KOG4341|consen 219 KYLNLSWCPQISG-------NGVQALQRGCKELEKLSLKGCL 253 (483)
T ss_pred HHhhhccCchhhc-------CcchHHhccchhhhhhhhcccc
Confidence 9999998853210 12222 5566666666666543
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.46 E-value=2.1e-09 Score=108.42 Aligned_cols=84 Identities=37% Similarity=0.283 Sum_probs=56.1
Q ss_pred CCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCcc-CCccccCCCCCCe
Q 043523 558 VPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGK-IPAQLASLNFLSV 636 (650)
Q Consensus 558 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~ 636 (650)
.++.|+.|||++|.+..+.......|+ |+.|++++|.++.. .+++++.+|+.||+++|-+.+- --.-+..+..|+.
T Consensus 207 ~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~ 283 (1096)
T KOG1859|consen 207 RLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIV 283 (1096)
T ss_pred hcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHH
Confidence 356666677777776655544555554 88888888887732 3567788888888888866542 1123566677888
Q ss_pred EEccCCcC
Q 043523 637 LNLSYNNL 644 (650)
Q Consensus 637 L~l~~n~~ 644 (650)
|+|.+||+
T Consensus 284 L~LeGNPl 291 (1096)
T KOG1859|consen 284 LWLEGNPL 291 (1096)
T ss_pred HhhcCCcc
Confidence 88888875
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=2.7e-08 Score=89.86 Aligned_cols=185 Identities=18% Similarity=0.131 Sum_probs=95.6
Q ss_pred CCCCcEEEcCCCcccc--CCCcCccCCCCCcEEEccCCcccccCCcc-ccCCCcCEEeCCCCcCcccCChHHHhccccCC
Q 043523 68 LENLTWVEVRRCNFTG--PIPPSMANLTQLFHMDFSSNHFSGHIPSL-HKSRNLKYLDLSFNNLSGGISSTFWEQLVNLN 144 (650)
Q Consensus 68 l~~L~~L~L~~~~l~~--~~~~~l~~l~~L~~L~l~~~~i~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~ 144 (650)
+.+++.++|.+|.|++ .....+.++|+|++|+++.|++...+... ....+|++|-+.+..+......+++..++.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 4556666666666652 22234456777777777777665443333 34467777777777776555556667777777
Q ss_pred eEEccCCcCCCC--cchhccC-CCCCCEEEccCCcCCCCCchh--hhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcE
Q 043523 145 LVLLSHNSLNGS--IPRSLFL-LPNLETLWLSNNQFENQLPEI--SNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYT 219 (650)
Q Consensus 145 ~L~l~~~~~~~~--~~~~l~~-l~~L~~L~l~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~ 219 (650)
+|.++.|..... ...+... -+.++.+....|... .+... ....++++..+-+.+|.+.+.-...-+..++.+..
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~-~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQ-LWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHH-HHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 777777733221 1112222 224444444444322 11110 11224555555555555443333333344555556
Q ss_pred EeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccCCcCC
Q 043523 220 LDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIP 260 (650)
Q Consensus 220 L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~i~ 260 (650)
|+++.+++.+. ..+..+.+++.|+.|.++++.+.
T Consensus 229 LnL~~~~idsw-------asvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 229 LNLGANNIDSW-------ASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hhhcccccccH-------HHHHHHcCCchhheeeccCCccc
Confidence 66666655432 23333555666666666665554
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.40 E-value=4e-08 Score=99.48 Aligned_cols=122 Identities=23% Similarity=0.202 Sum_probs=72.5
Q ss_pred CccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEc
Q 043523 391 TLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVL 470 (650)
Q Consensus 391 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 470 (650)
.|...+.+.|.++ . .+..+.-++.++.|+|+.|+++.. ..+..|+.|++|||++|.+..+.--...+|. |+.|++
T Consensus 165 ~L~~a~fsyN~L~-~-mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-L-MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-h-HHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeee
Confidence 3444555555543 2 222355566677777777777633 3667777777777777777764333334455 777777
Q ss_pred cCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhc
Q 043523 471 QSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAET 521 (650)
Q Consensus 471 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~ 521 (650)
++|.+++. ..+.++.+|+.||+++|-+.+.-....+-.+..++....
T Consensus 240 rnN~l~tL----~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~L 286 (1096)
T KOG1859|consen 240 RNNALTTL----RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWL 286 (1096)
T ss_pred cccHHHhh----hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhh
Confidence 77777653 245566777777777777665544444444444333333
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.30 E-value=1.6e-06 Score=74.25 Aligned_cols=105 Identities=22% Similarity=0.239 Sum_probs=56.2
Q ss_pred CCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCC-CcCccCCCCCcEEEc
Q 043523 22 TLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPI-PPSMANLTQLFHMDF 100 (650)
Q Consensus 22 ~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~-~~~l~~l~~L~~L~l 100 (650)
+...+||++|.+ ...+.|..++.|.+|.|++|.|+...|.--..+++|+.|.+.+|.+.... -..+..|++|++|.+
T Consensus 43 ~~d~iDLtdNdl--~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDL--RKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccch--hhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 445566666655 33445666666666666666666444444444555666666666555211 123455566666666
Q ss_pred cCCcccccCC----ccccCCCcCEEeCCCCcC
Q 043523 101 SSNHFSGHIP----SLHKSRNLKYLDLSFNNL 128 (650)
Q Consensus 101 ~~~~i~~~~~----~~~~~~~L~~L~l~~~~l 128 (650)
-+|.++.... .+.++|+|+.||++.-..
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 6665543222 244456666666555443
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.20 E-value=2.3e-07 Score=82.91 Aligned_cols=103 Identities=24% Similarity=0.220 Sum_probs=63.6
Q ss_pred CCCCccEEEcCCCccccccc----hhcccCCCCCEEeCCCCccccccch-----hhhcCCCCCeEEccCcccceecC--C
Q 043523 413 RNCGLQILDLGGNQLQGVVP----KSLANCNMLQVLDLKNNHISDNFPC-----WLGNASSLQVLVLQSNNFSGHIS--C 481 (650)
Q Consensus 413 ~l~~L~~L~ls~~~i~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~-----~~~~~~~L~~L~l~~n~~~~~~~--~ 481 (650)
.-+.|+...+..|++..-.. ..+..-..|+++.+..|.|...... .+..+.+|+.|+|+.|-++-..+ +
T Consensus 155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L 234 (388)
T COG5238 155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL 234 (388)
T ss_pred cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence 34557777777776652211 2333445777788888776643222 23457888888888887764321 2
Q ss_pred CCCCCCCCCCCeeeCCCcccccccChHHHHhHHh
Q 043523 482 PRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEE 515 (650)
Q Consensus 482 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~ 515 (650)
...+..|+.|++|.+.+|-+........+....+
T Consensus 235 a~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e 268 (388)
T COG5238 235 ADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE 268 (388)
T ss_pred HHHhcccchhhhccccchhhccccHHHHHHHhhh
Confidence 4556778888888888887766655555544443
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.08 E-value=5.4e-06 Score=71.10 Aligned_cols=109 Identities=22% Similarity=0.193 Sum_probs=85.2
Q ss_pred CccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCcccccc-chhhhcCCCCCeEE
Q 043523 391 TLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNF-PCWLGNASSLQVLV 469 (650)
Q Consensus 391 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~~~~L~~L~ 469 (650)
....+|+++|.+. .+ ..|++++.|.+|.+.+|+|+.+.|.--..+++|+.|.|.+|.+.... ..-+..||+|++|.
T Consensus 43 ~~d~iDLtdNdl~-~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchh-hc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 6677888888765 33 33899999999999999999887776677899999999999887622 23467799999999
Q ss_pred ccCcccceecCC-CCCCCCCCCCCeeeCCCcccc
Q 043523 470 LQSNNFSGHISC-PRNNVSWPLLQIVDLASNKFS 502 (650)
Q Consensus 470 l~~n~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~ 502 (650)
+-+|+++....- ...+..+|+|+.||..+-...
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ 153 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK 153 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence 999998754311 235678899999999886543
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.00 E-value=1.3e-07 Score=75.36 Aligned_cols=88 Identities=18% Similarity=0.225 Sum_probs=66.9
Q ss_pred CCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeE
Q 043523 558 VPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVL 637 (650)
Q Consensus 558 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L 637 (650)
.++..+.+.+.+|.+++++.+ +..+++|+.|++++|++. ..|+.+..+.++-.||..+|.+..+..+.|.. ...-..
T Consensus 75 kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s-~~~al~ 151 (177)
T KOG4579|consen 75 KFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVDLFYS-SLPALI 151 (177)
T ss_pred ccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccccCcHHHhcc-ccHHHH
Confidence 566777788888888855554 999999999999999999 77888888999999999999988665553321 333444
Q ss_pred EccCCcCcccC
Q 043523 638 NLSYNNLVGKI 648 (650)
Q Consensus 638 ~l~~n~~~~~~ 648 (650)
+++++|+.+.=
T Consensus 152 ~lgnepl~~~~ 162 (177)
T KOG4579|consen 152 KLGNEPLGDET 162 (177)
T ss_pred HhcCCcccccC
Confidence 55777777653
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.99 E-value=9.3e-06 Score=52.28 Aligned_cols=36 Identities=44% Similarity=0.580 Sum_probs=16.5
Q ss_pred CCCEEeCCCCccccccchhhhcCCCCCeEEccCcccc
Q 043523 440 MLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFS 476 (650)
Q Consensus 440 ~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 476 (650)
+|++|++++|++++ ++..+.+|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 44555555555554 2233445555555555555544
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.97 E-value=3.5e-05 Score=75.63 Aligned_cols=71 Identities=18% Similarity=0.254 Sum_probs=42.5
Q ss_pred CccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCC-ccccccchhhhcCCCCCeEE
Q 043523 391 TLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNN-HISDNFPCWLGNASSLQVLV 469 (650)
Q Consensus 391 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~L~~L~ 469 (650)
.++.|++++|.+. .+|. ++ .+|++|.+++|.-....|+.+ .++|+.|++++| .+.. . .++|++|+
T Consensus 53 ~l~~L~Is~c~L~-sLP~--LP--~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s-L------P~sLe~L~ 118 (426)
T PRK15386 53 ASGRLYIKDCDIE-SLPV--LP--NELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG-L------PESVRSLE 118 (426)
T ss_pred CCCEEEeCCCCCc-ccCC--CC--CCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc-c------ccccceEE
Confidence 7788888888666 4441 22 258888887764333555544 357777777777 3332 2 24566667
Q ss_pred ccCccc
Q 043523 470 LQSNNF 475 (650)
Q Consensus 470 l~~n~~ 475 (650)
+..+..
T Consensus 119 L~~n~~ 124 (426)
T PRK15386 119 IKGSAT 124 (426)
T ss_pred eCCCCC
Confidence 665543
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.95 E-value=1.1e-05 Score=52.03 Aligned_cols=38 Identities=45% Similarity=0.590 Sum_probs=28.5
Q ss_pred CCccEEEcCCCccccccchhcccCCCCCEEeCCCCcccc
Q 043523 415 CGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISD 453 (650)
Q Consensus 415 ~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~ 453 (650)
++|++|++++|+|+ .++..++++++|++|++++|++++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 36888888888888 445568888888888888888886
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.86 E-value=9.7e-06 Score=72.77 Aligned_cols=224 Identities=22% Similarity=0.190 Sum_probs=103.3
Q ss_pred CCCcccEEEccCCcCcC----CCCCCCCCCCCCcEEEcCCCccc---c-------CCCcCccCCCCCcEEEccCCccccc
Q 043523 43 KNSSLRNLILSGTGFSG----TLPDSIGNLENLTWVEVRRCNFT---G-------PIPPSMANLTQLFHMDFSSNHFSGH 108 (650)
Q Consensus 43 ~l~~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~L~~~~l~---~-------~~~~~l~~l~~L~~L~l~~~~i~~~ 108 (650)
.+..++.++|++|.|.. .+...+++-.+|+..+++.-... . .+..++.+|++|+..+|++|-+...
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 36677888888887763 23445566677777777653221 1 1223445667777777777665432
Q ss_pred CC-----ccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCch
Q 043523 109 IP-----SLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPE 183 (650)
Q Consensus 109 ~~-----~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 183 (650)
.+ -+.+-..|.+|.+.+|.+.-..... +++ .|.+| ....-...-|.|+.....+|++......
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~r-igk--al~~l---------a~nKKaa~kp~Le~vicgrNRlengs~~ 175 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGR-IGK--ALFHL---------AYNKKAADKPKLEVVICGRNRLENGSKE 175 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhH-HHH--HHHHH---------HHHhhhccCCCceEEEeccchhccCcHH
Confidence 22 2334466666666666553111111 110 00000 0001112334555555555544322211
Q ss_pred hh---hcCCCCccEEEccCCcCCCC----CchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCC-CCCCCCCcEEEcc
Q 043523 184 IS---NVSSSVLFDLDLSGNRLEGP----VPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPI-LKNQSQLSGLDIS 255 (650)
Q Consensus 184 ~~---~~~~~~L~~L~l~~~~l~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~-l~~~~~L~~L~l~ 255 (650)
.. ...-.+|+.+.+..|.+... +...-+..+++|+.|++..|.++...... +.. +...+.|++|.+.
T Consensus 176 ~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~-----La~al~~W~~lrEL~ln 250 (388)
T COG5238 176 LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRY-----LADALCEWNLLRELRLN 250 (388)
T ss_pred HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHH-----HHHHhcccchhhhcccc
Confidence 11 00112444445544443311 00111245677777777777665321110 000 3334457777777
Q ss_pred CCcCCCCCChhHHhh----cCcccceeeeccc
Q 043523 256 NNQIPGEIPNWIWEV----GNGNLNFLNLSHN 283 (650)
Q Consensus 256 ~~~i~~~~~~~~~~~----~~~~L~~L~l~~~ 283 (650)
+|-+.......+... ..++|..|....|
T Consensus 251 DClls~~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 251 DCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred chhhccccHHHHHHHhhhhcCCCccccccchh
Confidence 777665555544332 2334444444444
No 59
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.85 E-value=2.1e-06 Score=90.78 Aligned_cols=86 Identities=23% Similarity=0.215 Sum_probs=44.8
Q ss_pred cCCCCCccEEEcCCCc-cccccchhccc-CCCCCEEeCCCCc-cccccchhh-hcCCCCCeEEccCcccceecCCCCCCC
Q 043523 411 FPRNCGLQILDLGGNQ-LQGVVPKSLAN-CNMLQVLDLKNNH-ISDNFPCWL-GNASSLQVLVLQSNNFSGHISCPRNNV 486 (650)
Q Consensus 411 ~~~l~~L~~L~ls~~~-i~~~~~~~~~~-l~~L~~L~Ls~n~-l~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~ 486 (650)
...+.+|+.|+++++. +++..-.++.. |++|++|.+.+|. +++.....+ ..|+.|++|++++|...+..++.....
T Consensus 239 ~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~ 318 (482)
T KOG1947|consen 239 LSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLK 318 (482)
T ss_pred hhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHH
Confidence 4445566666666665 54444444433 6666666666665 444333322 346666666666666543322233344
Q ss_pred CCCCCCeeeC
Q 043523 487 SWPLLQIVDL 496 (650)
Q Consensus 487 ~~~~L~~L~l 496 (650)
++++++.+.+
T Consensus 319 ~c~~l~~l~~ 328 (482)
T KOG1947|consen 319 NCPNLRELKL 328 (482)
T ss_pred hCcchhhhhh
Confidence 4555555443
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.81 E-value=8.8e-05 Score=62.21 Aligned_cols=88 Identities=16% Similarity=0.280 Sum_probs=47.5
Q ss_pred CCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCC
Q 043523 406 LSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNN 485 (650)
Q Consensus 406 ~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 485 (650)
++...|..+.+|+.+.+.. .+..+...+|..+++|+.+.+.++ +..+....|.++++++++.+.+ .+.... ...+
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~--~~~F 77 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIG--DNAF 77 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE---TTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccc--cccc
Confidence 4455577777788888775 455566677777777888887775 6665666677777788777765 333332 3445
Q ss_pred CCCCCCCeeeCCC
Q 043523 486 VSWPLLQIVDLAS 498 (650)
Q Consensus 486 ~~~~~L~~L~l~~ 498 (650)
..+++|+.+++..
T Consensus 78 ~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 78 SNCTNLKNIDIPS 90 (129)
T ss_dssp TT-TTECEEEETT
T ss_pred cccccccccccCc
Confidence 5566666666644
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.78 E-value=6e-06 Score=88.20 Aligned_cols=137 Identities=18% Similarity=0.197 Sum_probs=81.5
Q ss_pred cccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEE
Q 043523 365 YFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVL 444 (650)
Q Consensus 365 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L 444 (650)
+|+.|++++..........-.+..+|+|+.|.+++-.+...-....+.++++|..||+|+++++.. .+++.+++|++|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 456666665443222222223333457777777766554333334466777788888888877643 667778888888
Q ss_pred eCCCCcccc-ccchhhhcCCCCCeEEccCcccceecCC----CCCCCCCCCCCeeeCCCccccc
Q 043523 445 DLKNNHISD-NFPCWLGNASSLQVLVLQSNNFSGHISC----PRNNVSWPLLQIVDLASNKFSG 503 (650)
Q Consensus 445 ~Ls~n~l~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~----~~~~~~~~~L~~L~l~~n~~~~ 503 (650)
.+.+=.+.. .....+.++++|+.|++|.-+....... .+.-..+|.|+.||.|+..+..
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 777766664 2233556778888888887664422110 1223346788888888776653
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.77 E-value=5.3e-06 Score=88.59 Aligned_cols=83 Identities=28% Similarity=0.366 Sum_probs=34.2
Q ss_pred CCCCCCEEeCCCCCCCCCCC-CCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCcccc-CCCcCccCCCCCc
Q 043523 19 QVPTLETLDLSENQLLQGSL-PNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTG-PIPPSMANLTQLF 96 (650)
Q Consensus 19 ~~~~L~~L~ls~~~i~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-~~~~~l~~l~~L~ 96 (650)
.+|.|+.|.+++-.+..... .....+|+|+.||+++++++.. .+++++++|++|.+.+-.+.. ..-..+-++++|+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 44555555554444322211 1223344555555555444422 344444444444444443331 1111233444444
Q ss_pred EEEccCC
Q 043523 97 HMDFSSN 103 (650)
Q Consensus 97 ~L~l~~~ 103 (650)
+||+|..
T Consensus 224 vLDIS~~ 230 (699)
T KOG3665|consen 224 VLDISRD 230 (699)
T ss_pred eeecccc
Confidence 4444443
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.77 E-value=9e-05 Score=62.15 Aligned_cols=126 Identities=17% Similarity=0.227 Sum_probs=61.6
Q ss_pred cccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccC
Q 043523 12 KFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMAN 91 (650)
Q Consensus 12 ~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~ 91 (650)
+...+|.++++|+.+.+.. .+.......|..+++|+.+.+.++ +......+|.++++++.+.+.+ .+.......|..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 3456788888888888875 456667778888878888888774 5534455777777788888865 444355567777
Q ss_pred CCCCcEEEccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccC
Q 043523 92 LTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNL 143 (650)
Q Consensus 92 l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L 143 (650)
+++|+.+++..+ +..+....+.-.+++.+.+..+ +. .+....|.++++|
T Consensus 80 ~~~l~~i~~~~~-~~~i~~~~f~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l 128 (129)
T PF13306_consen 80 CTNLKNIDIPSN-ITEIGSSSFSNCNLKEINIPSN-IT-KIEENAFKNCTKL 128 (129)
T ss_dssp -TTECEEEETTT--BEEHTTTTTT-T--EEE-TTB--S-S----GGG-----
T ss_pred cccccccccCcc-ccEEchhhhcCCCceEEEECCC-cc-EECCccccccccC
Confidence 788888877654 4333333222236666666542 22 2333335555544
No 64
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.74 E-value=1.8e-06 Score=69.01 Aligned_cols=60 Identities=20% Similarity=0.211 Sum_probs=28.8
Q ss_pred CCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCccc
Q 043523 439 NMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKF 501 (650)
Q Consensus 439 ~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 501 (650)
..|+..+|++|.+.+..+..-...+..++|++.+|.+.+. +..+..+|.|+.|+++.|++
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdv---PeE~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDV---PEELAAMPALRSLNLRFNPL 112 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhc---hHHHhhhHHhhhcccccCcc
Confidence 3444445555555552222222344555555555555422 44455555555555555554
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.74 E-value=0.0002 Score=70.42 Aligned_cols=132 Identities=17% Similarity=0.291 Sum_probs=65.3
Q ss_pred CCcccEEEeccCcCCCCCCCCCCCccEEecCCC-cCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECc
Q 043523 294 ISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNN-HFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLS 372 (650)
Q Consensus 294 l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~-~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~ 372 (650)
++.++.|++++|.+... |..+.+++.|.++++ .++.+|..+ +++|+.|.+++|.....+|. +|+.|+++
T Consensus 51 ~~~l~~L~Is~c~L~sL-P~LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~ 120 (426)
T PRK15386 51 ARASGRLYIKDCDIESL-PVLPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPE------SVRSLEIK 120 (426)
T ss_pred hcCCCEEEeCCCCCccc-CCCCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccccccc------ccceEEeC
Confidence 45677777777755544 355566777777663 345555433 35666666666632222332 35555555
Q ss_pred Ccccc--ccCChhhhhccccCccEEEccCccCC--CcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCC
Q 043523 373 NNNLS--GTIPACLIAQSETTLGVLNLGRNNLN--GTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKN 448 (650)
Q Consensus 373 ~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~ 448 (650)
++... ..+|. +|+.|.+.+++.. ..++ ..++ ++|++|++++|... ..|..+. .+|+.|+++.
T Consensus 121 ~n~~~~L~~LPs--------sLk~L~I~~~n~~~~~~lp-~~LP--sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 121 GSATDSIKNVPN--------GLTSLSINSYNPENQARID-NLIS--PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHI 186 (426)
T ss_pred CCCCcccccCcc--------hHhheeccccccccccccc-cccC--CcccEEEecCCCcc-cCccccc--ccCcEEEecc
Confidence 44321 12222 4555555432210 0001 0011 35666666666544 3333332 4666666665
Q ss_pred C
Q 043523 449 N 449 (650)
Q Consensus 449 n 449 (650)
+
T Consensus 187 n 187 (426)
T PRK15386 187 E 187 (426)
T ss_pred c
Confidence 4
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.36 E-value=0.00012 Score=66.10 Aligned_cols=107 Identities=18% Similarity=0.195 Sum_probs=65.2
Q ss_pred CCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCC--ccccCCCcCccCCCCCcEEEccCCcccc--cCCccccCCCc
Q 043523 43 KNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRC--NFTGPIPPSMANLTQLFHMDFSSNHFSG--HIPSLHKSRNL 118 (650)
Q Consensus 43 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~--~l~~~~~~~l~~l~~L~~L~l~~~~i~~--~~~~~~~~~~L 118 (650)
.+..|+.|++.+..++.. ..+..+++|++|.++.| ++...++....++++|+++++++|++.. ..+.+..+.+|
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 345566666666555422 34556667777777777 5555555555566777777777777653 22345556777
Q ss_pred CEEeCCCCcCcc--cCChHHHhccccCCeEEccCC
Q 043523 119 KYLDLSFNNLSG--GISSTFWEQLVNLNLVLLSHN 151 (650)
Q Consensus 119 ~~L~l~~~~l~~--~~~~~~~~~l~~L~~L~l~~~ 151 (650)
..|++.+|..+. ......|.-+++|++|+-...
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 788887776553 222344677788887775543
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.30 E-value=3.1e-05 Score=81.88 Aligned_cols=224 Identities=20% Similarity=0.128 Sum_probs=126.6
Q ss_pred CccEEEccCccCCCc-CCCcccCCCCCccEEEcCCC-cccccc----chhcccCCCCCEEeCCCCc-cccccchhhhc-C
Q 043523 391 TLGVLNLGRNNLNGT-LSDTIFPRNCGLQILDLGGN-QLQGVV----PKSLANCNMLQVLDLKNNH-ISDNFPCWLGN-A 462 (650)
Q Consensus 391 ~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~ls~~-~i~~~~----~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~-~ 462 (650)
.|+.+.+.++.-... -.......++.|+.|+++++ ...... ......+++|+.|+++.+. +++.....+.. |
T Consensus 189 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c 268 (482)
T KOG1947|consen 189 LLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRC 268 (482)
T ss_pred hhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhC
Confidence 555555555532212 11223556777888888763 211111 1234567999999999998 77766666655 9
Q ss_pred CCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeec
Q 043523 463 SSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEV 542 (650)
Q Consensus 463 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 542 (650)
++|++|.+.+|.-.+..++......+++|++|++++|..... . .+... .. .+..++.+.....
T Consensus 269 ~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d---~---~l~~~-~~---~c~~l~~l~~~~~------- 331 (482)
T KOG1947|consen 269 PNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD---S---GLEAL-LK---NCPNLRELKLLSL------- 331 (482)
T ss_pred CCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH---H---HHHHH-HH---hCcchhhhhhhhc-------
Confidence 999999999998433334466677899999999999876511 1 11111 11 1222222211100
Q ss_pred ceEEeeccchhhcccCCCcccEEeCCCCcc---ccCCCccccCCcCCCEEeCccccCcccC-CcCccCCCCC--------
Q 043523 543 GVTVTVKGVETMLLKVPNIFTSIDFSSNNF---EGPIPEEMGRFKSLYALNMSHNALTGSI-PSSFGNLKQI-------- 610 (650)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~---~~~~~~~~~~l~~L~~L~ls~n~i~~~~-~~~~~~l~~L-------- 610 (650)
..++.++.+.+.++.. .......+..++.++.+.+..+.+++.. ...+.+++.|
T Consensus 332 --------------~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~ 397 (482)
T KOG1947|consen 332 --------------NGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRL 397 (482)
T ss_pred --------------CCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHh
Confidence 1134455555544443 1233345677888888888888755333 2344555544
Q ss_pred ------CeeeCCCCcCCcc-CCccccC-CCCCCeEEccCCcCc
Q 043523 611 ------ESLDLSMNNLSGK-IPAQLAS-LNFLSVLNLSYNNLV 645 (650)
Q Consensus 611 ------~~L~l~~n~i~~~-~~~~l~~-l~~L~~L~l~~n~~~ 645 (650)
+.|+++.|..... .-..... +..++.+++++++..
T Consensus 398 ~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 398 CRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred ccCCccceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence 6666666654322 2222222 556677777766554
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.26 E-value=0.00016 Score=65.22 Aligned_cols=112 Identities=25% Similarity=0.251 Sum_probs=62.9
Q ss_pred CCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEccCC--ccccc-CCccccCCCcCEEeCCCCcCcccCChHHH
Q 043523 61 LPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSN--HFSGH-IPSLHKSRNLKYLDLSFNNLSGGISSTFW 137 (650)
Q Consensus 61 ~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~--~i~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 137 (650)
+......+..|+.+++.+..++. -..|..+++|+.|.+++| .+... ..-+-.+|+|+++++++|++...-...-+
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 33444455566666666666652 123556777777777777 33322 22233447777777777776532122225
Q ss_pred hccccCCeEEccCCcCCCC---cchhccCCCCCCEEEccC
Q 043523 138 EQLVNLNLVLLSHNSLNGS---IPRSLFLLPNLETLWLSN 174 (650)
Q Consensus 138 ~~l~~L~~L~l~~~~~~~~---~~~~l~~l~~L~~L~l~~ 174 (650)
..+++|..|++..|..... -...|.-+++|+.|+-..
T Consensus 113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 5666677777777755431 223345566776666543
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=2.2e-05 Score=70.79 Aligned_cols=100 Identities=27% Similarity=0.298 Sum_probs=59.8
Q ss_pred CccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccc-hhhhcCCCCCeEE
Q 043523 391 TLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFP-CWLGNASSLQVLV 469 (650)
Q Consensus 391 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~L~~L~ 469 (650)
+.++|++.||.+.+. . ....|+.|++|.|+-|+|+.. ..+..|+.|++|+|..|.|.++.. ..+.++|+|++|.
T Consensus 20 ~vkKLNcwg~~L~DI-s--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI-S--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccHH-H--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 567777777776632 1 245666777777777777633 346667777777777777766332 3456677777777
Q ss_pred ccCcccceecCC---CCCCCCCCCCCeee
Q 043523 470 LQSNNFSGHISC---PRNNVSWPLLQIVD 495 (650)
Q Consensus 470 l~~n~~~~~~~~---~~~~~~~~~L~~L~ 495 (650)
|..|+-.+..+- ...+.-+|+|++||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 777765432210 01233456666654
No 70
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.27 E-value=3.8e-05 Score=78.53 Aligned_cols=60 Identities=32% Similarity=0.411 Sum_probs=28.0
Q ss_pred CCEEeCccccCccc----CCcCccCC-CCCCeeeCCCCcCCcc----CCccccCCCCCCeEEccCCcCc
Q 043523 586 LYALNMSHNALTGS----IPSSFGNL-KQIESLDLSMNNLSGK----IPAQLASLNFLSVLNLSYNNLV 645 (650)
Q Consensus 586 L~~L~ls~n~i~~~----~~~~~~~l-~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~l~~n~~~ 645 (650)
+.++++.+|++.+. ....+..+ +.+++++++.|.++.. ..+.+..+++++.+.+++|++.
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 44455555554432 12222333 4445555555555442 2334444455555555555544
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.91 E-value=0.00047 Score=62.53 Aligned_cols=78 Identities=18% Similarity=0.177 Sum_probs=33.6
Q ss_pred EeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCcc-CCccccCCCCCCeEEccCCc
Q 043523 565 IDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGK-IPAQLASLNFLSVLNLSYNN 643 (650)
Q Consensus 565 L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~l~~n~ 643 (650)
|++.+|.++++ ..+..++.|+.|.||-|+|+.. +.|..|++|+.|+|..|.|.++ --+.+.++|+|+.|.|..||
T Consensus 24 LNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 24 LNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred hcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCC
Confidence 44444444322 2233444444444444444422 2234444444444444444432 11234444444444444444
Q ss_pred Ccc
Q 043523 644 LVG 646 (650)
Q Consensus 644 ~~~ 646 (650)
..|
T Consensus 100 Cc~ 102 (388)
T KOG2123|consen 100 CCG 102 (388)
T ss_pred ccc
Confidence 443
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.96 E-value=0.0094 Score=51.84 Aligned_cols=85 Identities=19% Similarity=0.099 Sum_probs=51.1
Q ss_pred CccEEEcCCCccccccchhcccCCCCCEEeCCCCc-cccccchhhhc-CCCCCeEEccCcccceecCCCCCCCCCCCCCe
Q 043523 416 GLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNH-ISDNFPCWLGN-ASSLQVLVLQSNNFSGHISCPRNNVSWPLLQI 493 (650)
Q Consensus 416 ~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~ 493 (650)
.++.++-+++.|..++-+.+..+++++.|.+.+|+ +.+...+.+.+ .++|+.|+|++|+-.+..+ ...+..+++|+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G-L~~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG-LACLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH-HHHHHHhhhhHH
Confidence 47777777777776777777777777777777775 33322222222 5667777777666433322 334555666666
Q ss_pred eeCCCccc
Q 043523 494 VDLASNKF 501 (650)
Q Consensus 494 L~l~~n~~ 501 (650)
|.+.+-+.
T Consensus 181 L~l~~l~~ 188 (221)
T KOG3864|consen 181 LHLYDLPY 188 (221)
T ss_pred HHhcCchh
Confidence 66665443
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.93 E-value=0.0093 Score=31.65 Aligned_cols=12 Identities=67% Similarity=0.805 Sum_probs=5.6
Q ss_pred CCeeeCCCCcCC
Q 043523 610 IESLDLSMNNLS 621 (650)
Q Consensus 610 L~~L~l~~n~i~ 621 (650)
|++||+++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 444444444444
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.82 E-value=0.011 Score=31.39 Aligned_cols=21 Identities=62% Similarity=0.781 Sum_probs=14.3
Q ss_pred CCCEEeCccccCcccCCcCccC
Q 043523 585 SLYALNMSHNALTGSIPSSFGN 606 (650)
Q Consensus 585 ~L~~L~ls~n~i~~~~~~~~~~ 606 (650)
+|++|+|++|+++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4677888888777 55555554
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.77 E-value=0.00036 Score=71.52 Aligned_cols=61 Identities=28% Similarity=0.236 Sum_probs=34.4
Q ss_pred CccEEEcCCCccccc----cchhcccCCCCCEEeCCCCccccc----cchhhh----cCCCCCeEEccCcccc
Q 043523 416 GLQILDLGGNQLQGV----VPKSLANCNMLQVLDLKNNHISDN----FPCWLG----NASSLQVLVLQSNNFS 476 (650)
Q Consensus 416 ~L~~L~ls~~~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~----~~~~L~~L~l~~n~~~ 476 (650)
.+++|++..|.++.. +...+..+..+++++++.|.+... .+..+. ...++++|.+.+|.++
T Consensus 145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence 455566666665543 334555677777788887776531 112222 3455666666666654
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.47 E-value=0.021 Score=28.02 Aligned_cols=16 Identities=44% Similarity=0.632 Sum_probs=6.9
Q ss_pred CCCeEEccCCcCcccCC
Q 043523 633 FLSVLNLSYNNLVGKIP 649 (650)
Q Consensus 633 ~L~~L~l~~n~~~~~~p 649 (650)
+|+.|++++|+++ ++|
T Consensus 2 ~L~~L~l~~n~L~-~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLT-SLP 17 (17)
T ss_dssp T-SEEEETSS--S-SE-
T ss_pred ccCEEECCCCCCC-CCc
Confidence 4566666666654 444
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.75 E-value=0.0083 Score=52.17 Aligned_cols=85 Identities=16% Similarity=0.072 Sum_probs=43.0
Q ss_pred CCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhh
Q 043523 440 MLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVA 519 (650)
Q Consensus 440 ~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~ 519 (650)
.++.+|-+++.|.......+.++++++.|.+.+|+-.++.++...-.-.++|+.|++++|+-..+-...++..++.|...
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 44555555555555555555555555555555555443332222223345555555555554444555555555544444
Q ss_pred hcccC
Q 043523 520 ETKSG 524 (650)
Q Consensus 520 ~~~~~ 524 (650)
+...+
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 44443
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.86 E-value=0.085 Score=29.30 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=14.6
Q ss_pred CCCCCeeeCCCCcCCccCCcccc
Q 043523 607 LKQIESLDLSMNNLSGKIPAQLA 629 (650)
Q Consensus 607 l~~L~~L~l~~n~i~~~~~~~l~ 629 (650)
+++|++|++++|++..+++..|+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 35667777777777766555554
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.86 E-value=0.085 Score=29.30 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=14.6
Q ss_pred CCCCCeeeCCCCcCCccCCcccc
Q 043523 607 LKQIESLDLSMNNLSGKIPAQLA 629 (650)
Q Consensus 607 l~~L~~L~l~~n~i~~~~~~~l~ 629 (650)
+++|++|++++|++..+++..|+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 35667777777777766555554
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.95 E-value=0.073 Score=28.89 Aligned_cols=15 Identities=53% Similarity=0.764 Sum_probs=6.7
Q ss_pred CCCCEEeCCCCcccc
Q 043523 439 NMLQVLDLKNNHISD 453 (650)
Q Consensus 439 ~~L~~L~Ls~n~l~~ 453 (650)
++|++|+|++|++++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 445555555555544
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.03 E-value=0.0039 Score=55.21 Aligned_cols=91 Identities=13% Similarity=0.115 Sum_probs=59.6
Q ss_pred CCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEccCCcccccCCccccCC
Q 043523 37 SLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSR 116 (650)
Q Consensus 37 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~ 116 (650)
....+..++..+.||++.|.+. .+...|.-+..|..|+++.|.+. .+|..+.....++.++++.|..+..|..+.+.+
T Consensus 34 ~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~ 111 (326)
T KOG0473|consen 34 PVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEP 111 (326)
T ss_pred chhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccccC
Confidence 3345555666667777666554 44455556666677777777766 667777767777777777776666666667777
Q ss_pred CcCEEeCCCCcCc
Q 043523 117 NLKYLDLSFNNLS 129 (650)
Q Consensus 117 ~L~~L~l~~~~l~ 129 (650)
.++++++.++.+.
T Consensus 112 ~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 112 HPKKNEQKKTEFF 124 (326)
T ss_pred CcchhhhccCcch
Confidence 7777777666654
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.55 E-value=0.0047 Score=54.72 Aligned_cols=94 Identities=20% Similarity=0.151 Sum_probs=79.1
Q ss_pred cccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCc
Q 043523 10 QGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSM 89 (650)
Q Consensus 10 ~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l 89 (650)
..+....+..+.+.+.||++.|+. ...-..|..+..+..|+++.|.+. ..|..+.....++.+++.+|... ..|.++
T Consensus 31 s~~~v~ei~~~kr~tvld~~s~r~-vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~ 107 (326)
T KOG0473|consen 31 SEIPVREIASFKRVTVLDLSSNRL-VNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQ 107 (326)
T ss_pred cccchhhhhccceeeeehhhhhHH-HhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccc
Confidence 344566788899999999999987 333346777788899999999888 88888999999999999999888 899999
Q ss_pred cCCCCCcEEEccCCccc
Q 043523 90 ANLTQLFHMDFSSNHFS 106 (650)
Q Consensus 90 ~~l~~L~~L~l~~~~i~ 106 (650)
...++++++++-++.+.
T Consensus 108 ~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTEFF 124 (326)
T ss_pred cccCCcchhhhccCcch
Confidence 99999999999988754
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.17 E-value=0.27 Score=27.24 Aligned_cols=21 Identities=38% Similarity=0.395 Sum_probs=11.7
Q ss_pred CCCCEEeCCCCccccccchhh
Q 043523 439 NMLQVLDLKNNHISDNFPCWL 459 (650)
Q Consensus 439 ~~L~~L~Ls~n~l~~~~~~~~ 459 (650)
++|+.|+|++|++..+.+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666665444433
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.17 E-value=0.27 Score=27.24 Aligned_cols=21 Identities=38% Similarity=0.395 Sum_probs=11.7
Q ss_pred CCCCEEeCCCCccccccchhh
Q 043523 439 NMLQVLDLKNNHISDNFPCWL 459 (650)
Q Consensus 439 ~~L~~L~Ls~n~l~~~~~~~~ 459 (650)
++|+.|+|++|++..+.+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666665444433
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.89 E-value=0.099 Score=28.36 Aligned_cols=22 Identities=36% Similarity=0.447 Sum_probs=13.4
Q ss_pred CCCccEEEcCCCccccccchhc
Q 043523 414 NCGLQILDLGGNQLQGVVPKSL 435 (650)
Q Consensus 414 l~~L~~L~ls~~~i~~~~~~~~ 435 (650)
+++|++|++++|+|++....++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 4578888888888876655544
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=89.71 E-value=0.23 Score=27.33 Aligned_cols=18 Identities=39% Similarity=0.516 Sum_probs=11.7
Q ss_pred CCCCeEEccCCcCcccCCC
Q 043523 632 NFLSVLNLSYNNLVGKIPT 650 (650)
Q Consensus 632 ~~L~~L~l~~n~~~~~~p~ 650 (650)
++|+.|++++|+++ ++||
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35667777777766 5664
No 87
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=81.82 E-value=8.5 Score=38.78 Aligned_cols=60 Identities=23% Similarity=0.242 Sum_probs=31.2
Q ss_pred ccEEEcCCCccccccch---hcccCCCCCEEeCCCCccccc----cchhhhcCCCCCeEEccCcccc
Q 043523 417 LQILDLGGNQLQGVVPK---SLANCNMLQVLDLKNNHISDN----FPCWLGNASSLQVLVLQSNNFS 476 (650)
Q Consensus 417 L~~L~ls~~~i~~~~~~---~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~~~~L~~L~l~~n~~~ 476 (650)
+..+.++.|........ ....-+.+..|++++|...+. .+.......+++....+.|..+
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 56666666665522211 223345677777777766652 2233333455555555555443
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=80.33 E-value=1.2 Score=25.26 Aligned_cols=16 Identities=44% Similarity=0.648 Sum_probs=10.4
Q ss_pred CCCCEEeCCCCccccc
Q 043523 439 NMLQVLDLKNNHISDN 454 (650)
Q Consensus 439 ~~L~~L~Ls~n~l~~~ 454 (650)
++|++|+|++|.+.+.
T Consensus 2 ~~L~~LdL~~N~i~~~ 17 (28)
T smart00368 2 PSLRELDLSNNKLGDE 17 (28)
T ss_pred CccCEEECCCCCCCHH
Confidence 4567777777776653
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=77.59 E-value=2.1 Score=23.75 Aligned_cols=15 Identities=40% Similarity=0.547 Sum_probs=7.7
Q ss_pred CCCCEEeCCCCcccc
Q 043523 439 NMLQVLDLKNNHISD 453 (650)
Q Consensus 439 ~~L~~L~Ls~n~l~~ 453 (650)
++|++|+++.|+|..
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 345555555555543
No 90
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=71.39 E-value=2.7 Score=23.18 Aligned_cols=11 Identities=36% Similarity=0.362 Sum_probs=4.9
Q ss_pred CCCCEEeCCCC
Q 043523 439 NMLQVLDLKNN 449 (650)
Q Consensus 439 ~~L~~L~Ls~n 449 (650)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34444444444
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=65.35 E-value=4.2 Score=50.36 Aligned_cols=47 Identities=19% Similarity=0.072 Sum_probs=34.1
Q ss_pred EccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhH
Q 043523 469 VLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMM 517 (650)
Q Consensus 469 ~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~ 517 (650)
+|++|+|.... ...+..+++|+.|+|++|++.|.|...|+.+|.+-.
T Consensus 1 DLSnN~LstLp--~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~ 47 (2740)
T TIGR00864 1 DISNNKISTIE--EGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEK 47 (2740)
T ss_pred CCCCCcCCccC--hHHhccCCCceEEEeeCCccccccccHHHHHHHHhc
Confidence 35666666554 455666778888888889999999999888775433
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=63.76 E-value=2.7 Score=43.10 Aligned_cols=34 Identities=29% Similarity=0.318 Sum_probs=15.9
Q ss_pred CccEEEccCccCCCcCCC--cccCCCCCccEEEcCCC
Q 043523 391 TLGVLNLGRNNLNGTLSD--TIFPRNCGLQILDLGGN 425 (650)
Q Consensus 391 ~L~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~ls~~ 425 (650)
.+..+.+++|++. .+.. ..-...++|..|+|++|
T Consensus 219 ~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 219 EILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred ceeeeecccchhh-chhhhhHHHHhcchhheeecccc
Confidence 5666666666544 1111 01222345556666655
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=57.61 E-value=53 Score=33.45 Aligned_cols=37 Identities=19% Similarity=0.315 Sum_probs=16.8
Q ss_pred cCCCEEeCccccCcc----cCCcCccCCCCCCeeeCCCCcC
Q 043523 584 KSLYALNMSHNALTG----SIPSSFGNLKQIESLDLSMNNL 620 (650)
Q Consensus 584 ~~L~~L~ls~n~i~~----~~~~~~~~l~~L~~L~l~~n~i 620 (650)
+.+..|++++|...+ .+|.+.....+++....+.|..
T Consensus 440 qtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 440 QTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred cccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 445555555554442 2333434444444444444433
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=44.46 E-value=8.9 Score=39.52 Aligned_cols=17 Identities=24% Similarity=0.510 Sum_probs=8.5
Q ss_pred cCCCCcEEeCCCCcccc
Q 043523 213 ELRNLYTLDLSSNKFSR 229 (650)
Q Consensus 213 ~l~~L~~L~l~~~~~~~ 229 (650)
+.+.+..+++++|++.+
T Consensus 216 n~p~i~sl~lsnNrL~~ 232 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYH 232 (585)
T ss_pred CCcceeeeecccchhhc
Confidence 34445555555555443
No 95
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=30.97 E-value=15 Score=20.29 Aligned_cols=11 Identities=45% Similarity=0.522 Sum_probs=5.0
Q ss_pred CCeEEccCccc
Q 043523 465 LQVLVLQSNNF 475 (650)
Q Consensus 465 L~~L~l~~n~~ 475 (650)
|++|+|....+
T Consensus 2 LKtL~L~~v~f 12 (26)
T PF07723_consen 2 LKTLHLDSVVF 12 (26)
T ss_pred CeEEEeeEEEE
Confidence 44444444443
Done!