Query 043523
Match_columns 650
No_of_seqs 273 out of 3319
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 09:48:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043523.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043523hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 6.5E-65 2.2E-69 561.8 43.9 623 2-650 55-722 (768)
2 3rgz_A Protein brassinosteroid 100.0 5.9E-61 2E-65 530.3 37.8 608 3-643 83-738 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 4.8E-55 1.6E-59 479.7 45.7 588 2-647 9-624 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.4E-53 4.8E-58 468.1 46.4 567 24-648 7-600 (680)
5 3t6q_A CD180 antigen; protein- 100.0 5.6E-52 1.9E-56 449.3 41.8 541 2-648 17-563 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-50 3.9E-55 439.1 40.2 459 2-502 16-486 (606)
7 3t6q_A CD180 antigen; protein- 100.0 7.9E-49 2.7E-53 424.6 46.7 518 24-649 15-540 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 3E-49 1E-53 428.0 35.7 489 1-514 36-570 (606)
9 2z63_A TOLL-like receptor 4, v 100.0 1.5E-46 5.2E-51 404.2 37.9 514 3-650 13-536 (570)
10 3j0a_A TOLL-like receptor 5; m 100.0 3.1E-46 1E-50 417.0 38.6 540 2-647 9-562 (844)
11 2z81_A CD282 antigen, TOLL-lik 100.0 3E-46 1E-50 399.6 33.1 497 3-649 11-514 (549)
12 3j0a_A TOLL-like receptor 5; m 100.0 8.4E-46 2.9E-50 413.5 32.4 488 1-514 28-572 (844)
13 2z63_A TOLL-like receptor 4, v 100.0 4E-45 1.4E-49 393.1 36.5 490 1-511 32-540 (570)
14 4g8a_A TOLL-like receptor 4; l 100.0 7.6E-43 2.6E-47 381.0 37.9 529 8-645 42-580 (635)
15 2z7x_B TOLL-like receptor 1, v 100.0 6.6E-43 2.3E-47 370.7 28.5 463 2-515 5-495 (520)
16 2z81_A CD282 antigen, TOLL-lik 100.0 1E-41 3.4E-46 364.6 32.5 472 1-514 30-523 (549)
17 4g8a_A TOLL-like receptor 4; l 100.0 2.4E-41 8.3E-46 369.1 35.4 492 1-515 56-593 (635)
18 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5E-41 1.7E-45 359.0 27.9 400 19-502 29-441 (562)
19 2z7x_B TOLL-like receptor 1, v 100.0 2.5E-41 8.7E-46 358.6 19.4 436 1-476 25-481 (520)
20 4eco_A Uncharacterized protein 100.0 8.1E-41 2.8E-45 360.8 21.2 333 206-645 239-600 (636)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.5E-40 2.6E-44 349.9 28.0 471 1-514 35-523 (562)
22 4ecn_A Leucine-rich repeat pro 100.0 5E-40 1.7E-44 359.3 27.1 429 2-476 328-864 (876)
23 4eco_A Uncharacterized protein 100.0 5.1E-41 1.7E-45 362.3 16.1 183 296-505 403-603 (636)
24 4ecn_A Leucine-rich repeat pro 100.0 3.6E-39 1.2E-43 352.6 25.7 411 45-476 323-840 (876)
25 3v47_A TOLL-like receptor 5B a 100.0 5.3E-36 1.8E-40 312.4 33.6 405 23-515 12-422 (455)
26 3v47_A TOLL-like receptor 5B a 100.0 1.4E-35 4.6E-40 309.3 32.9 102 48-154 13-116 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 1.7E-35 5.9E-40 304.9 20.9 406 92-649 10-433 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 1.3E-34 4.4E-39 298.3 25.8 399 14-504 5-431 (454)
29 1o6v_A Internalin A; bacterial 100.0 3.3E-32 1.1E-36 283.5 31.8 345 189-646 45-389 (466)
30 1o6v_A Internalin A; bacterial 100.0 6E-32 2E-36 281.6 31.8 190 19-227 44-233 (466)
31 3bz5_A Internalin-J, INLJ; leu 100.0 2.3E-32 7.9E-37 281.8 27.2 365 9-509 30-394 (457)
32 3bz5_A Internalin-J, INLJ; leu 100.0 7.2E-32 2.4E-36 278.1 27.2 320 60-502 33-352 (457)
33 2id5_A Lingo-1, leucine rich r 100.0 9.9E-32 3.4E-36 281.5 25.8 278 317-646 57-334 (477)
34 4fmz_A Internalin; leucine ric 100.0 8.1E-31 2.8E-35 262.6 28.5 307 243-645 40-346 (347)
35 2id5_A Lingo-1, leucine rich r 100.0 6.4E-31 2.2E-35 275.3 25.0 297 298-646 14-310 (477)
36 3o6n_A APL1; leucine-rich repe 100.0 1.2E-30 4.1E-35 265.5 22.8 115 391-513 249-363 (390)
37 4fmz_A Internalin; leucine ric 100.0 3.2E-29 1.1E-33 251.0 27.8 306 212-621 41-346 (347)
38 3oja_B Anopheles plasmodium-re 100.0 1.4E-29 4.9E-34 271.6 23.2 114 391-512 255-368 (597)
39 3o6n_A APL1; leucine-rich repe 100.0 4E-29 1.4E-33 254.3 25.2 308 19-355 43-354 (390)
40 1xku_A Decorin; proteoglycan, 100.0 1.6E-28 5.4E-33 243.8 26.9 289 296-643 32-330 (330)
41 2ft3_A Biglycan; proteoglycan, 100.0 1.5E-28 5E-33 244.1 25.3 288 296-643 34-331 (332)
42 1z7x_W Ribonuclease inhibitor; 100.0 4.2E-32 1.4E-36 283.5 -1.2 172 413-626 254-445 (461)
43 1z7x_W Ribonuclease inhibitor; 100.0 5.3E-31 1.8E-35 275.2 4.5 244 359-646 165-441 (461)
44 3oja_B Anopheles plasmodium-re 100.0 3.8E-28 1.3E-32 260.6 25.8 307 20-355 50-360 (597)
45 1ogq_A PGIP-2, polygalacturona 100.0 4.9E-29 1.7E-33 244.6 16.2 249 340-643 50-302 (313)
46 1xku_A Decorin; proteoglycan, 100.0 3E-27 1E-31 234.5 27.6 269 316-646 31-307 (330)
47 1ogq_A PGIP-2, polygalacturona 100.0 3.3E-28 1.1E-32 238.7 18.0 233 364-650 50-286 (313)
48 2ft3_A Biglycan; proteoglycan, 100.0 3.3E-27 1.1E-31 234.3 23.6 267 316-645 33-307 (332)
49 2z80_A TOLL-like receptor 2, v 99.9 1E-27 3.5E-32 240.2 15.2 275 320-649 35-318 (353)
50 2z66_A Variable lymphocyte rec 99.9 2.3E-26 7.8E-31 225.7 21.2 248 319-622 10-262 (306)
51 3zyi_A Leucine-rich repeat-con 99.9 5.4E-26 1.9E-30 235.6 24.6 248 318-645 56-303 (452)
52 3zyj_A Leucine-rich repeat-con 99.9 5.5E-26 1.9E-30 234.7 24.3 248 318-645 45-292 (440)
53 2z66_A Variable lymphocyte rec 99.9 2.8E-26 9.7E-31 225.0 17.9 282 299-632 11-298 (306)
54 1ozn_A Reticulon 4 receptor; N 99.9 1.4E-25 4.9E-30 217.4 20.6 226 367-647 14-240 (285)
55 2z80_A TOLL-like receptor 2, v 99.9 2.5E-26 8.4E-31 230.2 13.1 282 295-625 31-318 (353)
56 1ozn_A Reticulon 4 receptor; N 99.9 1.2E-25 4.1E-30 218.0 16.8 269 319-642 14-284 (285)
57 3ogk_B Coronatine-insensitive 99.9 2.5E-27 8.7E-32 255.6 4.9 255 339-642 269-548 (592)
58 1wwl_A Monocyte differentiatio 99.9 5.3E-27 1.8E-31 230.3 5.5 254 339-646 42-310 (312)
59 3ogk_B Coronatine-insensitive 99.9 4.8E-27 1.6E-31 253.4 4.8 252 317-618 271-548 (592)
60 3g06_A SSPH2 (leucine-rich rep 99.9 5.9E-24 2E-28 225.2 26.6 267 274-631 41-307 (622)
61 3o53_A Protein LRIM1, AGAP0063 99.9 1.4E-26 4.8E-31 227.8 6.0 80 559-640 190-270 (317)
62 4fcg_A Uncharacterized protein 99.9 6.7E-25 2.3E-29 216.3 17.6 225 364-645 81-314 (328)
63 3zyi_A Leucine-rich repeat-con 99.9 6.9E-24 2.3E-28 219.8 23.9 197 298-501 57-254 (452)
64 3zyj_A Leucine-rich repeat-con 99.9 6.9E-24 2.4E-28 219.0 23.8 198 298-502 46-244 (440)
65 4fcg_A Uncharacterized protein 99.9 3.6E-24 1.2E-28 211.1 19.7 228 316-623 81-316 (328)
66 2p1m_B Transport inhibitor res 99.9 1.2E-26 4.1E-31 250.5 -0.4 85 559-643 455-542 (594)
67 2p1m_B Transport inhibitor res 99.9 2.3E-26 7.8E-31 248.3 0.8 137 163-305 103-245 (594)
68 2z62_A TOLL-like receptor 4, v 99.9 1.4E-23 4.8E-28 202.3 20.2 208 391-649 29-241 (276)
69 3o53_A Protein LRIM1, AGAP0063 99.9 1.5E-24 5.2E-29 213.2 11.2 219 362-645 32-250 (317)
70 2o6q_A Variable lymphocyte rec 99.9 6.1E-23 2.1E-27 196.9 21.8 201 366-645 18-218 (270)
71 1wwl_A Monocyte differentiatio 99.9 5.3E-25 1.8E-29 216.0 5.1 248 294-622 42-310 (312)
72 3g06_A SSPH2 (leucine-rich rep 99.9 8.9E-22 3E-26 208.6 28.4 264 22-384 41-304 (622)
73 3oja_A Leucine-rich immune mol 99.9 5.6E-24 1.9E-28 221.3 11.2 236 315-640 33-270 (487)
74 3oja_A Leucine-rich immune mol 99.9 3.8E-23 1.3E-27 215.0 12.9 216 365-645 35-250 (487)
75 2z62_A TOLL-like receptor 4, v 99.9 5.3E-22 1.8E-26 191.3 19.1 214 6-226 16-235 (276)
76 4glp_A Monocyte differentiatio 99.9 1.2E-22 4E-27 199.2 14.6 235 364-647 64-309 (310)
77 2o6q_A Variable lymphocyte rec 99.9 1.9E-21 6.6E-26 186.4 22.7 212 297-513 18-230 (270)
78 3rfs_A Internalin B, repeat mo 99.9 3.6E-22 1.2E-26 191.6 16.0 84 559-649 156-239 (272)
79 1p9a_G Platelet glycoprotein I 99.9 2.5E-21 8.7E-26 186.9 21.3 213 293-514 8-220 (290)
80 1p9a_G Platelet glycoprotein I 99.9 2.8E-21 9.6E-26 186.6 20.9 87 558-645 122-208 (290)
81 3goz_A Leucine-rich repeat-con 99.9 8.8E-23 3E-27 204.7 8.7 264 320-625 2-301 (362)
82 3m19_A Variable lymphocyte rec 99.9 8E-21 2.7E-25 179.9 20.1 105 391-501 15-119 (251)
83 2ca6_A RAN GTPase-activating p 99.9 2.9E-23 9.9E-28 210.6 2.9 195 412-648 91-319 (386)
84 3rfs_A Internalin B, repeat mo 99.9 7.8E-21 2.7E-25 182.3 19.4 93 558-650 131-223 (272)
85 3goz_A Leucine-rich repeat-con 99.9 3.7E-22 1.3E-26 200.1 10.1 257 300-599 3-299 (362)
86 2xwt_C Thyrotropin receptor; s 99.9 2.5E-21 8.5E-26 182.1 14.6 197 391-643 32-237 (239)
87 2ast_B S-phase kinase-associat 99.9 3.2E-22 1.1E-26 199.1 7.0 176 317-500 48-233 (336)
88 1h6u_A Internalin H; cell adhe 99.9 1.8E-20 6E-25 183.0 18.9 189 391-645 42-230 (308)
89 3m19_A Variable lymphocyte rec 99.8 6.5E-20 2.2E-24 173.6 19.9 191 317-515 15-206 (251)
90 2ast_B S-phase kinase-associat 99.8 8.7E-21 3E-25 188.8 10.9 255 339-650 46-311 (336)
91 2ca6_A RAN GTPase-activating p 99.8 2E-21 6.8E-26 197.0 4.7 255 325-624 18-319 (386)
92 4glp_A Monocyte differentiatio 99.8 4.9E-20 1.7E-24 180.5 13.4 227 21-261 64-308 (310)
93 2xwt_C Thyrotropin receptor; s 99.8 5.1E-20 1.7E-24 173.1 12.9 195 46-257 32-236 (239)
94 1h6u_A Internalin H; cell adhe 99.8 2E-19 7E-24 175.5 16.2 194 17-228 37-230 (308)
95 4ay9_X Follicle-stimulating ho 99.8 1.8E-18 6.1E-23 172.4 17.5 241 319-642 12-256 (350)
96 2o6s_A Variable lymphocyte rec 99.8 1.4E-18 4.6E-23 159.5 13.6 107 391-500 29-135 (208)
97 4ay9_X Follicle-stimulating ho 99.8 1.2E-18 3.9E-23 173.7 13.4 198 4-208 16-219 (350)
98 1h6t_A Internalin B; cell adhe 99.8 2.9E-18 1E-22 165.6 15.1 168 391-622 47-214 (291)
99 2o6s_A Variable lymphocyte rec 99.8 5.3E-18 1.8E-22 155.5 14.7 109 391-502 53-161 (208)
100 2v9t_B SLIT homolog 2 protein 99.8 9.9E-18 3.4E-22 154.6 16.0 80 393-476 14-93 (220)
101 2v9t_B SLIT homolog 2 protein 99.8 1.3E-17 4.4E-22 153.9 16.6 164 319-514 14-177 (220)
102 2v70_A SLIT-2, SLIT homolog 2 99.8 1.4E-17 4.9E-22 153.5 16.6 165 319-515 14-179 (220)
103 3cvr_A Invasion plasmid antige 99.8 8.4E-18 2.9E-22 175.8 16.7 187 365-631 60-253 (571)
104 2v70_A SLIT-2, SLIT homolog 2 99.8 1.4E-17 4.7E-22 153.6 16.1 67 579-645 100-166 (220)
105 2xot_A Amphoterin-induced prot 99.7 7.1E-18 2.4E-22 168.7 14.3 156 417-645 41-202 (361)
106 1m9s_A Internalin B; cell inva 99.7 3.6E-18 1.2E-22 180.9 11.9 197 366-630 23-219 (605)
107 3e6j_A Variable lymphocyte rec 99.7 3.3E-17 1.1E-21 152.3 15.6 82 391-476 20-101 (229)
108 2xot_A Amphoterin-induced prot 99.7 1.2E-17 4E-22 167.1 12.4 184 319-510 21-210 (361)
109 1h6t_A Internalin B; cell adhe 99.7 1.9E-17 6.5E-22 159.9 12.5 150 17-178 42-191 (291)
110 1m9s_A Internalin B; cell inva 99.7 2.1E-17 7.1E-22 175.0 12.9 194 342-603 23-216 (605)
111 4ezg_A Putative uncharacterize 99.7 3.5E-17 1.2E-21 148.4 11.9 153 413-646 42-195 (197)
112 3e6j_A Variable lymphocyte rec 99.7 2.4E-16 8.1E-21 146.5 17.5 152 23-179 21-173 (229)
113 1xeu_A Internalin C; cellular 99.7 2.1E-17 7.1E-22 157.0 10.0 170 391-625 20-189 (263)
114 3sb4_A Hypothetical leucine ri 99.7 3.2E-17 1.1E-21 161.8 9.4 66 573-639 262-328 (329)
115 3cvr_A Invasion plasmid antige 99.7 3.5E-16 1.2E-20 163.6 17.0 150 294-464 99-255 (571)
116 4ezg_A Putative uncharacterize 99.7 1.7E-16 5.8E-21 143.9 10.9 153 17-178 40-194 (197)
117 1xeu_A Internalin C; cellular 99.7 4E-16 1.4E-20 148.1 12.4 161 3-178 25-185 (263)
118 1w8a_A SLIT protein; signaling 99.7 9.2E-16 3.1E-20 138.1 13.8 142 367-515 11-152 (192)
119 2wfh_A SLIT homolog 2 protein 99.6 2.6E-15 9E-20 135.0 13.6 140 367-515 13-152 (193)
120 4fdw_A Leucine rich hypothetic 99.6 1.6E-14 5.4E-19 145.3 20.6 87 554-643 294-381 (401)
121 3sb4_A Hypothetical leucine ri 99.6 3E-15 1E-19 147.7 14.8 103 389-496 225-328 (329)
122 4fdw_A Leucine rich hypothetic 99.6 2.3E-14 7.9E-19 144.1 21.1 241 340-645 113-358 (401)
123 1dce_A Protein (RAB geranylger 99.6 1E-17 3.5E-22 176.4 -5.2 122 440-639 442-567 (567)
124 1dce_A Protein (RAB geranylger 99.6 1.2E-16 4.1E-21 168.2 -0.4 185 412-649 346-550 (567)
125 4fs7_A Uncharacterized protein 99.6 1.1E-13 3.7E-18 140.2 20.0 203 35-257 61-263 (394)
126 2ell_A Acidic leucine-rich nuc 99.6 4.1E-15 1.4E-19 131.0 8.0 136 18-155 21-161 (168)
127 1w8a_A SLIT protein; signaling 99.6 2.9E-14 9.8E-19 128.3 13.6 127 2-131 13-141 (192)
128 2ell_A Acidic leucine-rich nuc 99.6 1.2E-14 4.1E-19 128.0 10.8 134 44-179 23-161 (168)
129 2je0_A Acidic leucine-rich nuc 99.6 1.3E-14 4.5E-19 124.9 10.3 129 19-149 15-148 (149)
130 2o6r_A Variable lymphocyte rec 99.6 5E-14 1.7E-18 125.2 14.1 141 366-514 9-150 (177)
131 2je0_A Acidic leucine-rich nuc 99.5 7.5E-15 2.6E-19 126.4 8.0 123 1-125 21-149 (149)
132 2wfh_A SLIT homolog 2 protein 99.5 1.1E-13 3.9E-18 124.2 13.7 106 22-128 32-138 (193)
133 4b8c_D Glucose-repressible alc 99.5 4E-15 1.4E-19 161.9 4.1 154 430-642 215-369 (727)
134 2o6r_A Variable lymphocyte rec 99.5 3.9E-13 1.3E-17 119.3 15.5 126 2-130 12-138 (177)
135 1a9n_A U2A', U2A'; complex (nu 99.5 6E-14 2.1E-18 124.4 9.7 134 15-153 13-152 (176)
136 1a9n_A U2A', U2A'; complex (nu 99.5 1E-13 3.4E-18 122.9 9.6 41 579-620 108-152 (176)
137 4fs7_A Uncharacterized protein 99.5 1.5E-12 5E-17 131.9 19.3 89 551-642 288-376 (394)
138 4b8c_D Glucose-repressible alc 99.4 3.8E-14 1.3E-18 154.1 5.6 192 21-225 173-369 (727)
139 3g39_A Variable lymphocyte rec 99.4 7.9E-13 2.7E-17 116.1 12.6 118 391-514 10-128 (170)
140 2r9u_A Variable lymphocyte rec 99.4 2.4E-12 8.3E-17 113.3 12.8 118 392-515 14-132 (174)
141 3un9_A NLR family member X1; l 99.4 2.7E-14 9.2E-19 142.2 -1.5 113 390-502 72-196 (372)
142 1ds9_A Outer arm dynein; leuci 99.4 6.8E-15 2.3E-19 133.4 -5.5 83 560-646 93-186 (198)
143 3g39_A Variable lymphocyte rec 99.4 5.9E-12 2E-16 110.5 13.0 106 23-131 11-117 (170)
144 2r9u_A Variable lymphocyte rec 99.4 5.4E-12 1.9E-16 111.0 12.3 106 23-131 14-120 (174)
145 3un9_A NLR family member X1; l 99.3 6.9E-14 2.3E-18 139.2 -1.1 188 415-645 72-283 (372)
146 4gt6_A Cell surface protein; l 99.3 9.5E-11 3.3E-15 118.5 21.0 333 132-501 54-390 (394)
147 1ds9_A Outer arm dynein; leuci 99.3 7.7E-15 2.6E-19 133.0 -10.6 133 64-203 43-185 (198)
148 4gt6_A Cell surface protein; l 99.3 5.8E-10 2E-14 112.7 22.7 305 274-644 65-390 (394)
149 2ifg_A High affinity nerve gro 99.2 7.6E-11 2.6E-15 117.2 12.5 119 393-517 11-131 (347)
150 4h09_A Hypothetical leucine ri 99.1 6.5E-09 2.2E-13 104.6 23.8 83 551-635 277-359 (379)
151 2ifg_A High affinity nerve gro 99.1 5.6E-10 1.9E-14 110.9 11.5 114 24-139 11-126 (347)
152 4h09_A Hypothetical leucine ri 99.0 2.2E-08 7.6E-13 100.6 20.2 285 294-642 45-343 (379)
153 2ra8_A Uncharacterized protein 98.9 1.7E-09 5.9E-14 106.4 5.6 84 558-643 250-341 (362)
154 2ra8_A Uncharacterized protein 98.8 1.1E-09 3.7E-14 107.9 1.9 181 389-619 138-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.6 3.9E-08 1.3E-12 87.2 4.5 111 391-501 37-163 (185)
156 3e4g_A ATP synthase subunit S, 98.5 1.4E-08 4.7E-13 87.2 0.9 87 559-645 60-152 (176)
157 1io0_A Tropomodulin; LRR prote 98.5 1.9E-08 6.4E-13 89.2 1.5 121 357-477 29-165 (185)
158 3e4g_A ATP synthase subunit S, 98.5 2.7E-08 9.4E-13 85.3 1.8 83 416-500 62-150 (176)
159 3rw6_A Nuclear RNA export fact 98.2 3E-07 1E-11 85.4 1.5 80 557-638 167-257 (267)
160 3rw6_A Nuclear RNA export fact 98.1 3E-06 1E-10 78.7 5.2 67 581-649 167-237 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.6 6.8E-05 2.3E-09 65.6 5.3 110 391-500 42-168 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.4 5.5E-05 1.9E-09 66.2 2.3 115 360-476 37-170 (197)
163 3rfe_A Platelet glycoprotein I 97.2 0.00053 1.8E-08 56.0 6.5 68 443-515 12-81 (130)
164 3rfe_A Platelet glycoprotein I 97.1 0.00088 3E-08 54.7 6.8 55 564-621 12-68 (130)
165 2lz0_A Uncharacterized protein 87.7 1.6 5.3E-05 33.1 6.6 49 6-55 5-53 (100)
166 2lz0_A Uncharacterized protein 82.8 1.5 5.3E-05 33.2 4.5 49 569-618 5-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.5e-65 Score=561.84 Aligned_cols=623 Identities=30% Similarity=0.433 Sum_probs=521.7
Q ss_pred eecCCCCCccc---ccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCC--CCCCCCCCcEEEc
Q 043523 2 LDLSECGLQGK---FPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPD--SIGNLENLTWVEV 76 (650)
Q Consensus 2 L~l~~~~i~~~---~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~--~~~~l~~L~~L~L 76 (650)
|+++++.+.+. .+.++.++++|+.++++.+.+. ..+..|..+++|++|+|++|.+.+.+|. .++++++|++|++
T Consensus 55 L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L 133 (768)
T 3rgz_A 55 IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNV 133 (768)
T ss_dssp EECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEEC
T ss_pred EECCCCCcCCccCccChhHhccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEEC
Confidence 78999999987 8889999999999999999873 3456899999999999999999988888 9999999999999
Q ss_pred CCCccccCCCcCc-cCCCCCcEEEccCCcccccCCc----cccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCC
Q 043523 77 RRCNFTGPIPPSM-ANLTQLFHMDFSSNHFSGHIPS----LHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHN 151 (650)
Q Consensus 77 ~~~~l~~~~~~~l-~~l~~L~~L~l~~~~i~~~~~~----~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 151 (650)
++|.+.+..|..+ .++++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ +..+++|++|++++|
T Consensus 134 s~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n 210 (768)
T 3rgz_A 134 SSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSN 210 (768)
T ss_dssp CSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB---CTTCTTCCEEECCSS
T ss_pred cCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC---cccCCcCCEEECcCC
Confidence 9999998777765 8999999999999999876653 6788999999999999986544 378999999999999
Q ss_pred cCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCcccccc
Q 043523 152 SLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLR 231 (650)
Q Consensus 152 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 231 (650)
.+....+. +..+++|++|++++|.+....+.. ...+++|+.|++++|.+.+.+|.. .+++|+.|++++|.++.
T Consensus 211 ~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~-- 283 (768)
T 3rgz_A 211 NFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTG-- 283 (768)
T ss_dssp CCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEE--
T ss_pred cCCCCCcc-cccCCCCCEEECcCCcCCCcccHH-HhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCC--
Confidence 99976666 999999999999999988655543 346899999999999998777753 78999999999998872
Q ss_pred ccCCCCCCCCC-CCC-CCCCcEEEccCCcCCCCCChhHHhhcCcccceeeecccccc-CCcC--cccCCcccEEEeccCc
Q 043523 232 LASSKPRVIPI-LKN-QSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLV-SLQE--PYSISSIRLLDLHSNQ 306 (650)
Q Consensus 232 ~~~~~~~~l~~-l~~-~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~-~l~~--~~~l~~L~~L~l~~~~ 306 (650)
.++. +.. +++|++|++++|.+.+..|.++.... +|++|++++|.+. .++. ...+++|++|++++|.
T Consensus 284 -------~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~--~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~ 354 (768)
T 3rgz_A 284 -------EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS--LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354 (768)
T ss_dssp -------SCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCT--TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE
T ss_pred -------ccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCC--CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc
Confidence 2332 433 58999999999999988998887654 5999999999987 6664 4568999999999999
Q ss_pred CCCCCCCCC----CCccEEecCCCcCC-CCchhhhh-ccCCccEEEccCCcccccccccccCCCcccEEECcCccccccC
Q 043523 307 LRGNIPHMS----TNTSYVDYSNNHFT-FIPADIGN-FMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTI 380 (650)
Q Consensus 307 l~~~~~~~~----~~L~~L~l~~~~i~-~~~~~~~~-~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 380 (650)
+.+..+..+ .+++++++++|+++ .++..+.. .++.++++++++|.+.+..|..+..+++|+.|++++|.+.+..
T Consensus 355 l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 434 (768)
T 3rgz_A 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434 (768)
T ss_dssp EEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCC
T ss_pred cCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcc
Confidence 987766643 38999999999987 45544433 2678999999999999999999999999999999999999889
Q ss_pred ChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhh
Q 043523 381 PACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLG 460 (650)
Q Consensus 381 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 460 (650)
|..+.... +|++|++++|.+.+.++.. +..+++|++|++++|++++..|..+..+++|++|+|++|++.+..|..+.
T Consensus 435 p~~l~~l~--~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~ 511 (768)
T 3rgz_A 435 PSSLGSLS--KLRDLKLWLNMLEGEIPQE-LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511 (768)
T ss_dssp CGGGGGCT--TCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred cHHHhcCC--CCCEEECCCCcccCcCCHH-HcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh
Confidence 98887765 9999999999999777766 88999999999999999999999999999999999999999988999999
Q ss_pred cCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCccccccee--------
Q 043523 461 NASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRY-------- 532 (650)
Q Consensus 461 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~-------- 532 (650)
.+++|++|++++|++.+.. +..+..+++|++|++++|++.+.+|..+............. ......+..
T Consensus 512 ~l~~L~~L~L~~N~l~~~~--p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 588 (768)
T 3rgz_A 512 RLENLAILKLSNNSFSGNI--PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA-GKRYVYIKNDGMKKECH 588 (768)
T ss_dssp GCTTCCEEECCSSCCEEEC--CGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTC-SCEEEEEECCSCCTTCC
T ss_pred cCCCCCEEECCCCcccCcC--CHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccc-ccccccccccccccccc
Confidence 9999999999999998766 78899999999999999999999987764322111100000 000000000
Q ss_pred --------ecc--------CCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccC
Q 043523 533 --------VIS--------SNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNAL 596 (650)
Q Consensus 533 --------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i 596 (650)
... ..............+.....+..++.++.||+++|.+++.++..+..+++|+.|+|++|++
T Consensus 589 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 668 (768)
T 3rgz_A 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668 (768)
T ss_dssp SSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCC
T ss_pred ccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCcc
Confidence 000 0000000001222333344556788999999999999999999999999999999999999
Q ss_pred cccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCcCcccCCC
Q 043523 597 TGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPT 650 (650)
Q Consensus 597 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~ 650 (650)
++.+|..|+++++|++||+++|++++.+|..+.++++|+.||+++|+++|.+|+
T Consensus 669 ~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred CCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 999999999999999999999999999999999999999999999999999996
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.9e-61 Score=530.26 Aligned_cols=608 Identities=28% Similarity=0.356 Sum_probs=478.2
Q ss_pred ecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCC--CCCCCCcccEEEccCCcCcCCCCCCC-CCCCCCcEEEcCCC
Q 043523 3 DLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLP--NFPKNSSLRNLILSGTGFSGTLPDSI-GNLENLTWVEVRRC 79 (650)
Q Consensus 3 ~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~--~~~~l~~L~~L~L~~~~~~~~~~~~~-~~l~~L~~L~L~~~ 79 (650)
+++.+++. ..|..|+++++|++|+|++|.+....+. .|..+++|++|+|++|.+.+..|..+ .++++|++|++++|
T Consensus 83 ~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n 161 (768)
T 3rgz_A 83 FLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161 (768)
T ss_dssp ECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSS
T ss_pred CCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCC
Confidence 34444443 2458899999999999999998654455 78899999999999999987777665 89999999999999
Q ss_pred ccccCCCcC---ccCCCCCcEEEccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCC
Q 043523 80 NFTGPIPPS---MANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGS 156 (650)
Q Consensus 80 ~l~~~~~~~---l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 156 (650)
.+++..|.. +.++++|++|++++|.+.+..+ +..+++|++|++++|.+.+.++. ++++++|++|++++|.+...
T Consensus 162 ~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~ 238 (768)
T 3rgz_A 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGD 238 (768)
T ss_dssp CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSC
T ss_pred ccCCcCChhhhhhccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCc
Confidence 999877776 8899999999999999986554 37889999999999999876665 79999999999999999988
Q ss_pred cchhccCCCCCCEEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCC
Q 043523 157 IPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSK 236 (650)
Q Consensus 157 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 236 (650)
.+.++..+++|++|++++|.+....+.. .+++|++|++++|.+.+.+|..++..+++|+.|++++|.+..
T Consensus 239 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~------- 308 (768)
T 3rgz_A 239 FSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG------- 308 (768)
T ss_dssp HHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEE-------
T ss_pred ccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCC-------
Confidence 9999999999999999999887655543 678999999999999988888875556999999999998873
Q ss_pred CCCCCC-CCCCCCCcEEEccCCcCCCCCChh-HHhhcCcccceeeecccccc-CCcCcc-cCC-cccEEEeccCcCCCCC
Q 043523 237 PRVIPI-LKNQSQLSGLDISNNQIPGEIPNW-IWEVGNGNLNFLNLSHNLLV-SLQEPY-SIS-SIRLLDLHSNQLRGNI 311 (650)
Q Consensus 237 ~~~l~~-l~~~~~L~~L~l~~~~i~~~~~~~-~~~~~~~~L~~L~l~~~~l~-~l~~~~-~l~-~L~~L~l~~~~l~~~~ 311 (650)
.++. +..+++|++|++++|.+.+.+|.. +... ++|++|++++|.+. .++... .++ +|+.+++++|.+.+..
T Consensus 309 --~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l--~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~ 384 (768)
T 3rgz_A 309 --AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM--RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384 (768)
T ss_dssp --CCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTC--TTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEEC
T ss_pred --ccchHHhcCCCccEEECCCCcccCcCCHHHHhcC--CCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCc
Confidence 3333 788999999999999998778866 4433 46999999999887 455443 355 9999999999988655
Q ss_pred CCC-----CCCccEEecCCCcCC-CCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhh
Q 043523 312 PHM-----STNTSYVDYSNNHFT-FIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLI 385 (650)
Q Consensus 312 ~~~-----~~~L~~L~l~~~~i~-~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 385 (650)
+.. +++++++++++|+++ .++..+. .+++|+.+++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+.
T Consensus 385 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 463 (768)
T 3rgz_A 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLS-NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463 (768)
T ss_dssp CTTTTCSTTCCCCEEECCSSEEEEECCGGGG-GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred ChhhhhcccCCccEEECCCCccccccCHHHh-cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHc
Confidence 543 567999999999998 5555554 589999999999999999999999999999999999999988998877
Q ss_pred hccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCC
Q 043523 386 AQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSL 465 (650)
Q Consensus 386 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L 465 (650)
... +|++|++++|.+.+.++.. +..+++|++|++++|++++..|..+..+++|++|+|++|++.+..|..+..+++|
T Consensus 464 ~l~--~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 540 (768)
T 3rgz_A 464 YVK--TLETLILDFNDLTGEIPSG-LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540 (768)
T ss_dssp GCT--TCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTC
T ss_pred CCC--CceEEEecCCcccCcCCHH-HhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCC
Confidence 655 9999999999999777665 8999999999999999999999999999999999999999998899999999999
Q ss_pred CeEEccCcccceecCCCCCCCCCCCCCeeeCCCc-cccc--------------------ccChHHHHhHHhhHhhh----
Q 043523 466 QVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASN-KFSG--------------------RLSQKWLLTMEEMMVAE---- 520 (650)
Q Consensus 466 ~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n-~~~~--------------------~~~~~~~~~l~~l~~~~---- 520 (650)
++|++++|++.+.. +..+.....+..+++..+ .+.. ......+..+.......
T Consensus 541 ~~L~Ls~N~l~g~i--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 618 (768)
T 3rgz_A 541 IWLDLNTNLFNGTI--PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618 (768)
T ss_dssp CEEECCSSEEESBC--CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSC
T ss_pred CEEECCCCccCCcC--ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccc
Confidence 99999999987443 333333222222222110 0000 00000000000000000
Q ss_pred ------cccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccc
Q 043523 521 ------TKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHN 594 (650)
Q Consensus 521 ------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n 594 (650)
...+..++.+.....+...+. +..+..+..++.|+.|++++|.+++.++..+..+++|+.|+|++|
T Consensus 619 ~~~g~~~~~~~~l~~L~~LdLs~N~l~--------g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N 690 (768)
T 3rgz_A 619 VYGGHTSPTFDNNGSMMFLDMSYNMLS--------GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 690 (768)
T ss_dssp EEEEECCCSCSSSBCCCEEECCSSCCB--------SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred eecccCchhhhccccccEEECcCCccc--------ccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCC
Confidence 001112222222222222111 122233457889999999999999999999999999999999999
Q ss_pred cCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCc
Q 043523 595 ALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNN 643 (650)
Q Consensus 595 ~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~ 643 (650)
++++.+|..++.+++|++|++++|++++.+|.. ..+..+......+|+
T Consensus 691 ~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~ 738 (768)
T 3rgz_A 691 KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNP 738 (768)
T ss_dssp CCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCT
T ss_pred cccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCc
Confidence 999999999999999999999999999988854 233444445555664
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.8e-55 Score=479.69 Aligned_cols=588 Identities=22% Similarity=0.213 Sum_probs=404.2
Q ss_pred eecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCcc
Q 043523 2 LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNF 81 (650)
Q Consensus 2 L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l 81 (650)
++.++++++ ..|..+. +++++|++++|.++......|.++++|++|++++|.+.+..|..++++++|++|++++|.+
T Consensus 9 ~~cs~~~L~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 85 (680)
T 1ziw_A 9 ADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85 (680)
T ss_dssp EECCSSCCS-SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC
T ss_pred eECCCCCcc-ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc
Confidence 355556665 3444443 5677777777776555555666677777777777777666666667777777777777777
Q ss_pred ccCCCcCccCCCCCcEEEccCCcccccCC-ccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchh
Q 043523 82 TGPIPPSMANLTQLFHMDFSSNHFSGHIP-SLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRS 160 (650)
Q Consensus 82 ~~~~~~~l~~l~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 160 (650)
+...+.+|+++++|++|++++|++...++ .+..+++|++|++++|.+++..+.. +.++++|++|++++|.++...+..
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~ 164 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT-QVQLENLQELLLSNNKIQALKSEE 164 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCS-SSCCTTCCEEECCSSCCCCBCHHH
T ss_pred CccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchh-hcccccCCEEEccCCcccccCHHH
Confidence 64444467777777777777777665553 4566677777777777666444333 566777777777777766555544
Q ss_pred cc--CCCCCCEEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHh--hcCCCCcEEeCCCCccccccccCCC
Q 043523 161 LF--LLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISII--FELRNLYTLDLSSNKFSRLRLASSK 236 (650)
Q Consensus 161 l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~ 236 (650)
+. .+++|++|++++|.+....+. ....+.+|+.+++.++.+.......+. ...++|+.|++++|.+.......
T Consensus 165 ~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~-- 241 (680)
T 1ziw_A 165 LDIFANSSLKKLELSSNQIKEFSPG-CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT-- 241 (680)
T ss_dssp HGGGTTCEESEEECTTCCCCCBCTT-GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTT--
T ss_pred hhccccccccEEECCCCcccccChh-hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhH--
Confidence 43 446677777777766543332 223355666666666654421111110 12356777777776665332111
Q ss_pred CCCCCCCCCC--CCCcEEEccCCcCCCCCChhHHhhcCcccceeeeccccccCCcC--cccCCcccEEEeccCcCCC---
Q 043523 237 PRVIPILKNQ--SQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQE--PYSISSIRLLDLHSNQLRG--- 309 (650)
Q Consensus 237 ~~~l~~l~~~--~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~l~~L~~L~l~~~~l~~--- 309 (650)
+..+ ++|++|++++|.+.+..+.++... ++|++|++++|.+..+.+ ...+++|+.+++++|...+
T Consensus 242 ------~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 313 (680)
T 1ziw_A 242 ------FLGLKWTNLTMLDLSYNNLNVVGNDSFAWL--PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 313 (680)
T ss_dssp ------TGGGGGSCCCEEECTTSCCCEECTTTTTTC--TTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC---
T ss_pred ------hhccCcCCCCEEECCCCCcCccCcccccCc--ccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccc
Confidence 3333 237777777776665555554433 347777777776665432 2346777777776654332
Q ss_pred ---------CCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCccccc--cccccc--CCCcccEEECcCccc
Q 043523 310 ---------NIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGV--IPESVC--KGIYFQVLDLSNNNL 376 (650)
Q Consensus 310 ---------~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~--~~~~l~--~~~~L~~L~l~~~~~ 376 (650)
.....+++|+++++++|+++.++...+..+++|+.+++++|.+... ....+. ..++|+.|++++|.+
T Consensus 314 ~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l 393 (680)
T 1ziw_A 314 LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393 (680)
T ss_dssp ---CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCC
T ss_pred cccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCC
Confidence 1233457788888888888877777667788888888888764322 222232 235788899999888
Q ss_pred cccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccc--cc
Q 043523 377 SGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHIS--DN 454 (650)
Q Consensus 377 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~--~~ 454 (650)
.+..+..+.... +|++|++++|.+.+.++...|..+++|++|++++|++.+..+..|..+++|++|++++|.+. +.
T Consensus 394 ~~~~~~~~~~l~--~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 471 (680)
T 1ziw_A 394 SKIESDAFSWLG--HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS 471 (680)
T ss_dssp CEECTTTTTTCT--TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTC
T ss_pred CeEChhhhhCCC--CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccccccc
Confidence 876666665443 89999999998887777777888999999999999988788888888999999999999876 35
Q ss_pred cchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeec
Q 043523 455 FPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVI 534 (650)
Q Consensus 455 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~ 534 (650)
.|..+..+++|++|++++|.++... +..+.++++|++|++++|.++.......
T Consensus 472 ~p~~~~~l~~L~~L~Ls~N~l~~i~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~------------------------- 524 (680)
T 1ziw_A 472 SPSPFQPLRNLTILDLSNNNIANIN--DDMLEGLEKLEILDLQHNNLARLWKHAN------------------------- 524 (680)
T ss_dssp SSCTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCGGGGSTTS-------------------------
T ss_pred CCcccccCCCCCEEECCCCCCCcCC--hhhhccccccCEEeCCCCCccccchhhc-------------------------
Confidence 6778888999999999999887654 5567888999999999998753211100
Q ss_pred cCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeee
Q 043523 535 SSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLD 614 (650)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~ 614 (650)
.+.....+..++.|++|++++|.+..+.+..+..+++|+.|++++|++++..+..|..+++|++|+
T Consensus 525 --------------~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 590 (680)
T 1ziw_A 525 --------------PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN 590 (680)
T ss_dssp --------------TTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred --------------cCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEE
Confidence 000111235678999999999999988777899999999999999999987778889999999999
Q ss_pred CCCCcCCccCCcccc-CCCCCCeEEccCCcCccc
Q 043523 615 LSMNNLSGKIPAQLA-SLNFLSVLNLSYNNLVGK 647 (650)
Q Consensus 615 l~~n~i~~~~~~~l~-~l~~L~~L~l~~n~~~~~ 647 (650)
+++|++++..+..+. .+++|+.|++++||+...
T Consensus 591 L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 591 LQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp CTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred CCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence 999999998888887 889999999999998754
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.4e-53 Score=468.06 Aligned_cols=567 Identities=21% Similarity=0.202 Sum_probs=470.3
Q ss_pred CEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEccCC
Q 043523 24 ETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSN 103 (650)
Q Consensus 24 ~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~ 103 (650)
+.++.+++.++.+. ..+. +++++|++++|.+.+..+..|.++++|++|++++|.+++..|.+|.++++|++|++++|
T Consensus 7 ~~~~cs~~~L~~ip-~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 7 EVADCSHLKLTQVP-DDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp SEEECCSSCCSSCC-SCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred CeeECCCCCccccc-cccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence 67999999985543 3443 79999999999999777778999999999999999999888999999999999999999
Q ss_pred cccccCC-ccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCc
Q 043523 104 HFSGHIP-SLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLP 182 (650)
Q Consensus 104 ~i~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 182 (650)
.+...++ .+..+++|++|++++|.+.+..+.. ++++++|++|++++|.+....+..+..+++|++|++++|.+....+
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP-FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCT-TTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred ccCccChhhhccCCCCCEEECCCCccCccChhH-ccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCH
Confidence 9998777 4888999999999999998544444 8999999999999999998888889999999999999999886555
Q ss_pred hhh-hcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccCCcCCC
Q 043523 183 EIS-NVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPG 261 (650)
Q Consensus 183 ~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~i~~ 261 (650)
... ...+++|+.|++++|.+.+. +...+..+++|+.++++++.+....... +......++|++|++++|.+.+
T Consensus 163 ~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~~~-----~~~~l~~~~L~~L~L~~n~l~~ 236 (680)
T 1ziw_A 163 EELDIFANSSLKKLELSSNQIKEF-SPGCFHAIGRLFGLFLNNVQLGPSLTEK-----LCLELANTSIRNLSLSNSQLST 236 (680)
T ss_dssp HHHGGGTTCEESEEECTTCCCCCB-CTTGGGGSSEECEEECTTCCCHHHHHHH-----HHHHHTTSCCCEEECTTSCCCE
T ss_pred HHhhccccccccEEECCCCccccc-ChhhhhhhhhhhhhhccccccChhhHHH-----HHHHhhhccccEEEccCCcccc
Confidence 432 33568999999999999854 4455589999999999998765321110 0001124689999999999998
Q ss_pred CCChhHHhhcCcccceeeeccccccCCcC--cccCCcccEEEeccCcCCCCCC---CCCCCccEEecCCCcCC-------
Q 043523 262 EIPNWIWEVGNGNLNFLNLSHNLLVSLQE--PYSISSIRLLDLHSNQLRGNIP---HMSTNTSYVDYSNNHFT------- 329 (650)
Q Consensus 262 ~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~l~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l~~~~i~------- 329 (650)
..|.++.....++|+.|++++|.+..+++ ...+++|+++++++|.+.+..+ ..+++|++++++++...
T Consensus 237 ~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~ 316 (680)
T 1ziw_A 237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLAS 316 (680)
T ss_dssp ECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------
T ss_pred cChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccc
Confidence 88888877665679999999999988754 3458999999999999886544 45678999999876533
Q ss_pred --CCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCcccccc--CChhhhhccccCccEEEccCccCCCc
Q 043523 330 --FIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGT--IPACLIAQSETTLGVLNLGRNNLNGT 405 (650)
Q Consensus 330 --~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~ 405 (650)
.+....+..+++|+.+++++|.+.+..+..+..+++|+.|++++|.+... ....+.....++|+.|++++|.+.+.
T Consensus 317 lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~ 396 (680)
T 1ziw_A 317 LPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 396 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEE
T ss_pred ccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeE
Confidence 23334556689999999999999999999999999999999999975422 22233333335899999999999854
Q ss_pred CCCcccCCCCCccEEEcCCCccccccc-hhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCC
Q 043523 406 LSDTIFPRNCGLQILDLGGNQLQGVVP-KSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRN 484 (650)
Q Consensus 406 ~~~~~~~~l~~L~~L~ls~~~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 484 (650)
.+ ..|..+++|++|++++|.+.+..+ ..+..+++|++|++++|++....+..|..+++|++|++++|.+......+..
T Consensus 397 ~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~ 475 (680)
T 1ziw_A 397 ES-DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP 475 (680)
T ss_dssp CT-TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCT
T ss_pred Ch-hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcc
Confidence 44 559999999999999999986554 7899999999999999999998889999999999999999998765555778
Q ss_pred CCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccE
Q 043523 485 NVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTS 564 (650)
Q Consensus 485 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 564 (650)
+.++++|++|++++|.++...+ ..+..++.|++
T Consensus 476 ~~~l~~L~~L~Ls~N~l~~i~~-----------------------------------------------~~~~~l~~L~~ 508 (680)
T 1ziw_A 476 FQPLRNLTILDLSNNNIANIND-----------------------------------------------DMLEGLEKLEI 508 (680)
T ss_dssp TTTCTTCCEEECCSSCCCCCCT-----------------------------------------------TTTTTCTTCCE
T ss_pred cccCCCCCEEECCCCCCCcCCh-----------------------------------------------hhhccccccCE
Confidence 8999999999999998764222 22346788999
Q ss_pred EeCCCCccccCCC--------ccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCe
Q 043523 565 IDFSSNNFEGPIP--------EEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSV 636 (650)
Q Consensus 565 L~l~~~~~~~~~~--------~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~ 636 (650)
|++++|.+.++.. ..+..+++|++|++++|+++...+.+|+++++|++|++++|+++.+++..|..+++|+.
T Consensus 509 L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 588 (680)
T 1ziw_A 509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 588 (680)
T ss_dssp EECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred EeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCE
Confidence 9999999986532 24788999999999999999666678999999999999999999999999999999999
Q ss_pred EEccCCcCcccC
Q 043523 637 LNLSYNNLVGKI 648 (650)
Q Consensus 637 L~l~~n~~~~~~ 648 (650)
|++++|.+++..
T Consensus 589 L~L~~N~l~~~~ 600 (680)
T 1ziw_A 589 LNLQKNLITSVE 600 (680)
T ss_dssp EECTTSCCCBCC
T ss_pred EECCCCcCCccC
Confidence 999999999643
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.6e-52 Score=449.32 Aligned_cols=541 Identities=19% Similarity=0.183 Sum_probs=398.4
Q ss_pred eecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCcc
Q 043523 2 LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNF 81 (650)
Q Consensus 2 L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l 81 (650)
++.++.+++ .+|..+. +.+++|++++|.++...+..|.++++|++|++++|.+.+..|.+|.++++|++|++++|++
T Consensus 17 ~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 17 YNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp EECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EECCCCCcc-cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence 345566666 5565554 3789999999999877777889999999999999988877788899999999999999999
Q ss_pred ccCCCcCccCCCCCcEEEccCCccccc-CCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchh
Q 043523 82 TGPIPPSMANLTQLFHMDFSSNHFSGH-IPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRS 160 (650)
Q Consensus 82 ~~~~~~~l~~l~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 160 (650)
++..|.+|+++++|++|++++|.+... +..+..+++|++|++++|.+.+..... +..+++|++|++++|.+....+..
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~ 172 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYLSKED 172 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT-TCCCTTCCEEECCSSCCCEECHHH
T ss_pred cccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCccc-ccCCcccCEEEcccCcccccChhh
Confidence 888888899999999999999988875 346778889999999999887533333 445889999999999888777788
Q ss_pred ccCCCCCC--EEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCC
Q 043523 161 LFLLPNLE--TLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPR 238 (650)
Q Consensus 161 l~~l~~L~--~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 238 (650)
+..+++|+ .+++++|.+....+... ....|+.+++++|. ..+ ..+..+.++....+....+..
T Consensus 173 ~~~l~~L~~l~L~l~~n~l~~~~~~~~--~~~~L~~L~l~~~~---~~~-~~~~~l~~~~l~~l~~~~~~~--------- 237 (606)
T 3t6q_A 173 MSSLQQATNLSLNLNGNDIAGIEPGAF--DSAVFQSLNFGGTQ---NLL-VIFKGLKNSTIQSLWLGTFED--------- 237 (606)
T ss_dssp HHTTTTCCSEEEECTTCCCCEECTTTT--TTCEEEEEECTTCS---CHH-HHHHHTTTCEEEEEECCCCTT---------
T ss_pred hhhhcccceeEEecCCCccCccChhHh--hhccccccccCCch---hHH-HHhhhccccchhheechhhcc---------
Confidence 88888888 88888888875444432 23578888888875 222 233555554444333222211
Q ss_pred CCCCCCCCCCCcEEEccCCcCCCCCChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCc
Q 043523 239 VIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNT 318 (650)
Q Consensus 239 ~l~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L 318 (650)
+... ...+..+......+++.+++++|.+..++... ...+++|
T Consensus 238 ----------~~~~--------~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~-------------------~~~l~~L 280 (606)
T 3t6q_A 238 ----------MDDE--------DISPAVFEGLCEMSVESINLQKHYFFNISSNT-------------------FHCFSGL 280 (606)
T ss_dssp ----------SCCC--------CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTT-------------------TTTCTTC
T ss_pred ----------cccc--------ccChhHhchhhcCceeEEEeecCccCccCHHH-------------------hccccCC
Confidence 1100 01112222222223555555555554443321 1122344
Q ss_pred cEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChh-hhhccccCccEEEc
Q 043523 319 SYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPAC-LIAQSETTLGVLNL 397 (650)
Q Consensus 319 ~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l 397 (650)
++|++++|+++.+|..+. .+++|+++++++|.+.+..+..+..+++|+.|++++|.+.+.++.. +.. .++|++|++
T Consensus 281 ~~L~l~~n~l~~lp~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~--l~~L~~L~l 357 (606)
T 3t6q_A 281 QELDLTATHLSELPSGLV-GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN--LENLRELDL 357 (606)
T ss_dssp SEEECTTSCCSCCCSSCC-SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT--CTTCCEEEC
T ss_pred CEEeccCCccCCCChhhc-ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhc--cCcCCEEEC
Confidence 445555555555554443 3677777888877777777777888888888888888777555543 333 348888888
Q ss_pred cCccCCCcCC-CcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccc-hhhhcCCCCCeEEccCccc
Q 043523 398 GRNNLNGTLS-DTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFP-CWLGNASSLQVLVLQSNNF 475 (650)
Q Consensus 398 ~~~~~~~~~~-~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~L~~L~l~~n~~ 475 (650)
++|.+.+... ...+..+++|++|++++|++.+..+..+..+++|++|++++|++.+..+ ..+..+++|++|++++|.+
T Consensus 358 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 437 (606)
T 3t6q_A 358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL 437 (606)
T ss_dssp CSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCC
T ss_pred CCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCcc
Confidence 8888774431 3348888999999999999888888889999999999999999887554 3478899999999999988
Q ss_pred ceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhc
Q 043523 476 SGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETML 555 (650)
Q Consensus 476 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (650)
.... +..+..+++|++|++++|++.+.... ....
T Consensus 438 ~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~--------------------------------------------~~~~ 471 (606)
T 3t6q_A 438 DISS--EQLFDGLPALQHLNLQGNHFPKGNIQ--------------------------------------------KTNS 471 (606)
T ss_dssp BTTC--TTTTTTCTTCCEEECTTCBCGGGEEC--------------------------------------------SSCG
T ss_pred CCcC--HHHHhCCCCCCEEECCCCCCCccccc--------------------------------------------cchh
Confidence 7554 66678889999999999987531100 0012
Q ss_pred ccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCC
Q 043523 556 LKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLS 635 (650)
Q Consensus 556 ~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~ 635 (650)
+..+++|++|++++|.+.++.+..+..+++|++|++++|++++..|+++.++++| +|++++|++++.+|..+..+++|+
T Consensus 472 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~ 550 (606)
T 3t6q_A 472 LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQR 550 (606)
T ss_dssp GGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSS
T ss_pred hccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCC
Confidence 3467889999999999998888999999999999999999999999999999999 999999999999999999999999
Q ss_pred eEEccCCcCcccC
Q 043523 636 VLNLSYNNLVGKI 648 (650)
Q Consensus 636 ~L~l~~n~~~~~~ 648 (650)
.|++++|++....
T Consensus 551 ~L~l~~N~~~c~c 563 (606)
T 3t6q_A 551 TINLRQNPLDCTC 563 (606)
T ss_dssp EEECTTCCEECSG
T ss_pred EEeCCCCCccccC
Confidence 9999999988643
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.1e-50 Score=439.07 Aligned_cols=459 Identities=19% Similarity=0.147 Sum_probs=306.4
Q ss_pred eecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCcc
Q 043523 2 LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNF 81 (650)
Q Consensus 2 L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l 81 (650)
++.++++++ ..|..+. +++++|++++|.++......|.++++|++|++++|.+.+..|..|.++++|++|++++|.+
T Consensus 16 ~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l 92 (606)
T 3vq2_A 16 YQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92 (606)
T ss_dssp EECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc
Confidence 567778888 5555554 7899999999999887777999999999999999999977888999999999999999999
Q ss_pred ccCCCcCccCCCCCcEEEccCCcccccC-CccccCCCcCEEeCCCCcCcc-cCChHHHhccccCCeEEccCCcCCCCcch
Q 043523 82 TGPIPPSMANLTQLFHMDFSSNHFSGHI-PSLHKSRNLKYLDLSFNNLSG-GISSTFWEQLVNLNLVLLSHNSLNGSIPR 159 (650)
Q Consensus 82 ~~~~~~~l~~l~~L~~L~l~~~~i~~~~-~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 159 (650)
++..|.+|+++++|++|++++|.+...+ ..+..+++|++|++++|.+.+ .++.. ++++++|++|++++|.+....+.
T Consensus 93 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 93 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEECTT
T ss_pred cccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceecChh
Confidence 9888999999999999999999998776 468888999999999999875 34555 89999999999999999877777
Q ss_pred hccCCCCC----CEEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccC-
Q 043523 160 SLFLLPNL----ETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLAS- 234 (650)
Q Consensus 160 ~l~~l~~L----~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~- 234 (650)
.+..++++ .++++++|.+....+.. .. ..+|+.+++++|.+.+......+..++.++.+.+..+.+.......
T Consensus 172 ~~~~l~~L~~~l~~L~l~~n~l~~~~~~~-~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~ 249 (606)
T 3vq2_A 172 DLQFLRENPQVNLSLDMSLNPIDFIQDQA-FQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249 (606)
T ss_dssp TTHHHHHCTTCCCEEECTTCCCCEECTTT-TT-TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred hhhhhhccccccceeeccCCCcceeCccc-cc-CceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccc
Confidence 67665555 48999999887443333 22 3389999999998865444555688899988887655443211000
Q ss_pred CCCCCCCCCCCCCCCcEEEc-cCCcCCCCCChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCC
Q 043523 235 SKPRVIPILKNQSQLSGLDI-SNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPH 313 (650)
Q Consensus 235 ~~~~~l~~l~~~~~L~~L~l-~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~ 313 (650)
.....+..+... .++.+++ ..+.+.+..|. +.. .++|+.|++++|.+..++....++
T Consensus 250 ~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~--l~~L~~L~l~~~~~~~l~~l~~~~------------------ 307 (606)
T 3vq2_A 250 FEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHC--LANVSAMSLAGVSIKYLEDVPKHF------------------ 307 (606)
T ss_dssp CCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGG--GTTCSEEEEESCCCCCCCCCCTTC------------------
T ss_pred cChHHhhhhhhc-cHhheeccccccccccccc-ccc--CCCCCEEEecCccchhhhhccccc------------------
Confidence 000011111111 2344444 33333333332 111 123444444444444444333334
Q ss_pred CCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccC--ChhhhhccccC
Q 043523 314 MSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTI--PACLIAQSETT 391 (650)
Q Consensus 314 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~ 391 (650)
+++++++++|++..+|.. .+++|+.+++++|...+.. .+..+++|+.|++++|.+.+.. +..+... ++
T Consensus 308 ---~L~~L~l~~n~l~~lp~~---~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~--~~ 377 (606)
T 3vq2_A 308 ---KWQSLSIIRCQLKQFPTL---DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGT--NS 377 (606)
T ss_dssp ---CCSEEEEESCCCSSCCCC---CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCC--SC
T ss_pred ---cCCEEEcccccCcccccC---CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccC--Cc
Confidence 444444445455444422 3677777777777444332 4556777777777777766442 4443333 36
Q ss_pred ccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccc-hhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEc
Q 043523 392 LGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVP-KSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVL 470 (650)
Q Consensus 392 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 470 (650)
|++|++++|.+. .++ ..|..+++|++|++++|++.+..+ ..+..+++|++|++++|++.+..+..+.++++|++|++
T Consensus 378 L~~L~L~~n~l~-~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 455 (606)
T 3vq2_A 378 LRHLDLSFNGAI-IMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455 (606)
T ss_dssp CCEEECCSCSEE-EEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred ccEeECCCCccc-cch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEEC
Confidence 777777777665 333 336667777777777777765555 56666777777777777777666666667777777777
Q ss_pred cCccccee-cCCCCCCCCCCCCCeeeCCCcccc
Q 043523 471 QSNNFSGH-ISCPRNNVSWPLLQIVDLASNKFS 502 (650)
Q Consensus 471 ~~n~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~ 502 (650)
++|++.+. . +..+..+++|++|++++|.++
T Consensus 456 ~~n~l~~~~~--~~~~~~l~~L~~L~Ls~n~l~ 486 (606)
T 3vq2_A 456 AGNSFKDNTL--SNVFANTTNLTFLDLSKCQLE 486 (606)
T ss_dssp TTCEEGGGEE--CSCCTTCTTCCEEECTTSCCC
T ss_pred CCCcCCCcch--HHhhccCCCCCEEECCCCcCC
Confidence 77766542 2 444555555565555555443
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.9e-49 Score=424.63 Aligned_cols=518 Identities=18% Similarity=0.157 Sum_probs=373.8
Q ss_pred CEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEccCC
Q 043523 24 ETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSN 103 (650)
Q Consensus 24 ~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~ 103 (650)
+.++.++..++.. +..+. +++++|++++|.+++..|..|.++++|++|++++|++....|.+|.++++|++|++++|
T Consensus 15 ~~~~c~~~~l~~i-P~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 15 KTYNCENLGLNEI-PGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp TEEECTTSCCSSC-CTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred ceEECCCCCcccC-cCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence 3566666665333 23343 36777777777777666667777777777777777777666777777777777777777
Q ss_pred cccccCC-ccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCc
Q 043523 104 HFSGHIP-SLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLP 182 (650)
Q Consensus 104 ~i~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 182 (650)
.+....+ .+..+++|++|++++|.+++..+.. ++++++|++|++++|.+.......+..+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l------------------ 152 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIP-LHNQKTLESLYLGSNHISSIKLPKGFPT------------------ 152 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSC-CTTCTTCCEEECCSSCCCCCCCCTTCCC------------------
T ss_pred cccccChhhhcccccccEeeccccCcccCCcch-hccCCcccEEECCCCcccccCcccccCC------------------
Confidence 7665433 4555666666666666665322222 4555555555555555544332333334
Q ss_pred hhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCc--EEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccCCcCC
Q 043523 183 EISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLY--TLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIP 260 (650)
Q Consensus 183 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~--~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~i~ 260 (650)
++|+.|++++|.+. .++...+..+++|+ .|++++|.+..+... .....+|++++++++.
T Consensus 153 -------~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~---------~~~~~~L~~L~l~~~~-- 213 (606)
T 3t6q_A 153 -------EKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPG---------AFDSAVFQSLNFGGTQ-- 213 (606)
T ss_dssp -------TTCCEEECCSSCCC-EECHHHHHTTTTCCSEEEECTTCCCCEECTT---------TTTTCEEEEEECTTCS--
T ss_pred -------cccCEEEcccCccc-ccChhhhhhhcccceeEEecCCCccCccChh---------HhhhccccccccCCch--
Confidence 44555555555554 33334446777777 777777777643222 2233567888888775
Q ss_pred CCCChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccC
Q 043523 261 GEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMS 340 (650)
Q Consensus 261 ~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~ 340 (650)
..+..+.......++.+.+.... . +....+....+.+.. ..+++.+++++|+++.++...+..++
T Consensus 214 -~~~~~~~~l~~~~l~~l~~~~~~--~---------~~~~~i~~~~~~~l~---~~~L~~L~l~~n~l~~~~~~~~~~l~ 278 (606)
T 3t6q_A 214 -NLLVIFKGLKNSTIQSLWLGTFE--D---------MDDEDISPAVFEGLC---EMSVESINLQKHYFFNISSNTFHCFS 278 (606)
T ss_dssp -CHHHHHHHTTTCEEEEEECCCCT--T---------SCCCCCCGGGGGGGG---GSEEEEEECTTCCCSSCCTTTTTTCT
T ss_pred -hHHHHhhhccccchhheechhhc--c---------ccccccChhHhchhh---cCceeEEEeecCccCccCHHHhcccc
Confidence 33444444333223333332221 0 000011111111100 12678888888888888888777899
Q ss_pred CccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEE
Q 043523 341 ETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQIL 420 (650)
Q Consensus 341 ~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 420 (650)
+|+++++++|.+. .+|..+..+++|+.|++++|.+.+..+..+.... +|++|++++|.+.+.++...+..+++|++|
T Consensus 279 ~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 355 (606)
T 3t6q_A 279 GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFP--SLTHLSIKGNTKRLELGTGCLENLENLREL 355 (606)
T ss_dssp TCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT--TCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred CCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccC--cCCEEECCCCCcccccchhhhhccCcCCEE
Confidence 9999999999988 6788899999999999999999866666665544 999999999999888888889999999999
Q ss_pred EcCCCcccccc--chhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCC
Q 043523 421 DLGGNQLQGVV--PKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLAS 498 (650)
Q Consensus 421 ~ls~~~i~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~ 498 (650)
++++|.+.+.. +..+..+++|++|++++|++.+..+..+..+++|++|++++|++..... ...+..+++|++|++++
T Consensus 356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~ 434 (606)
T 3t6q_A 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA-QSPFQNLHLLKVLNLSH 434 (606)
T ss_dssp ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT-CCTTTTCTTCCEEECTT
T ss_pred ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc-chhhhCcccCCEEECCC
Confidence 99999998765 7789999999999999999999888999999999999999999986531 34478899999999999
Q ss_pred cccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccC---
Q 043523 499 NKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGP--- 575 (650)
Q Consensus 499 n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~--- 575 (650)
|.+....+. .+..++.|++|++++|.+.+.
T Consensus 435 n~l~~~~~~-----------------------------------------------~~~~l~~L~~L~L~~n~l~~~~~~ 467 (606)
T 3t6q_A 435 SLLDISSEQ-----------------------------------------------LFDGLPALQHLNLQGNHFPKGNIQ 467 (606)
T ss_dssp CCCBTTCTT-----------------------------------------------TTTTCTTCCEEECTTCBCGGGEEC
T ss_pred CccCCcCHH-----------------------------------------------HHhCCCCCCEEECCCCCCCccccc
Confidence 987643322 224678999999999999762
Q ss_pred CCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCcCcccCC
Q 043523 576 IPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIP 649 (650)
Q Consensus 576 ~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 649 (650)
.+..+..+++|++|++++|++++..|.+|+.+++|++|++++|++++..|+.+.++++| .|++++|.+++..|
T Consensus 468 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~ 540 (606)
T 3t6q_A 468 KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP 540 (606)
T ss_dssp SSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCG
T ss_pred cchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCH
Confidence 33578899999999999999999989999999999999999999999999999999999 99999999997665
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3e-49 Score=427.96 Aligned_cols=489 Identities=18% Similarity=0.154 Sum_probs=409.2
Q ss_pred CeecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCc
Q 043523 1 TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCN 80 (650)
Q Consensus 1 ~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 80 (650)
+|++++|.+++..+.+|+++++|++|++++|.++...+..|.++++|++|+|++|.+.+..|..|+++++|++|++++|.
T Consensus 36 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 115 (606)
T 3vq2_A 36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK 115 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSC
T ss_pred EEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCc
Confidence 48999999999999999999999999999999988888899999999999999999997779999999999999999999
Q ss_pred cccCCCcCccCCCCCcEEEccCCcccc--cCCccccCCCcCEEeCCCCcCcccCChHHHhccccCC----eEEccCCcCC
Q 043523 81 FTGPIPPSMANLTQLFHMDFSSNHFSG--HIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLN----LVLLSHNSLN 154 (650)
Q Consensus 81 l~~~~~~~l~~l~~L~~L~l~~~~i~~--~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~----~L~l~~~~~~ 154 (650)
+++..+..++++++|++|++++|.+.. .+..+.++++|++|++++|.+++..+.. ++.+++|+ ++++++|.+.
T Consensus 116 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~~l~~L~l~~n~l~ 194 (606)
T 3vq2_A 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND-LQFLRENPQVNLSLDMSLNPID 194 (606)
T ss_dssp CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTT-THHHHHCTTCCCEEECTTCCCC
T ss_pred cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhh-hhhhhccccccceeeccCCCcc
Confidence 997777899999999999999999975 4667899999999999999998655544 66666665 8999999998
Q ss_pred CCcchhccCCCCCCEEEccCCcCCCCCchhhhcCCCCc--------------------------------cEEEc-cCCc
Q 043523 155 GSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVL--------------------------------FDLDL-SGNR 201 (650)
Q Consensus 155 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L--------------------------------~~L~l-~~~~ 201 (650)
...+..+... +|+.|++++|.+...........++.+ +.+++ ..+.
T Consensus 195 ~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~ 273 (606)
T 3vq2_A 195 FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTND 273 (606)
T ss_dssp EECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTT
T ss_pred eeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccc
Confidence 6655555544 899999999976521111112223333 34444 5555
Q ss_pred CCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccCCcCCCCCChhHHhhcCcccceeeec
Q 043523 202 LEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLS 281 (650)
Q Consensus 202 l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~ 281 (650)
+.+..|. +..+++|+.++++++.+..+. .+..+++|++|++++|.+ +.+|.+ ..++|++|+++
T Consensus 274 ~~~~~~~--~~~l~~L~~L~l~~~~~~~l~----------~l~~~~~L~~L~l~~n~l-~~lp~~----~l~~L~~L~l~ 336 (606)
T 3vq2_A 274 FSDDIVK--FHCLANVSAMSLAGVSIKYLE----------DVPKHFKWQSLSIIRCQL-KQFPTL----DLPFLKSLTLT 336 (606)
T ss_dssp CCGGGGS--CGGGTTCSEEEEESCCCCCCC----------CCCTTCCCSEEEEESCCC-SSCCCC----CCSSCCEEEEE
T ss_pred ccccccc--cccCCCCCEEEecCccchhhh----------hccccccCCEEEcccccC-cccccC----CCCccceeecc
Confidence 6655554 588999999999999886432 477889999999999999 577743 45679999999
Q ss_pred cccccCCcCcccCCcccEEEeccCcCCCCC--C---CCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccc
Q 043523 282 HNLLVSLQEPYSISSIRLLDLHSNQLRGNI--P---HMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVI 356 (650)
Q Consensus 282 ~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~--~---~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~ 356 (650)
+|..........+++|+.+++++|.+.+.. + ..+++|+++++++|+++.++..+ ..+++|+.+++++|.+.+..
T Consensus 337 ~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~l~~n~l~~~~ 415 (606)
T 3vq2_A 337 MNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANF-MGLEELQHLDFQHSTLKRVT 415 (606)
T ss_dssp SCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCC-TTCTTCCEEECTTSEEESTT
T ss_pred CCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhc-cCCCCCCeeECCCCccCCcc
Confidence 995444335567899999999999887542 2 35689999999999999887444 45899999999999999888
Q ss_pred c-ccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhc
Q 043523 357 P-ESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSL 435 (650)
Q Consensus 357 ~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~ 435 (650)
+ ..+..+++|+.|++++|.+.+..+..+.... +|++|++++|.+.+......|..+++|++|++++|++++..|..+
T Consensus 416 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 493 (606)
T 3vq2_A 416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT--SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF 493 (606)
T ss_dssp TTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT--TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred ChhhhhccccCCEEECcCCCCCccchhhhcCCC--CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhh
Confidence 7 6888999999999999999887777766554 999999999999875445559999999999999999998889999
Q ss_pred ccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCC-CCCeeeCCCcccccccChHHHHhHH
Q 043523 436 ANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWP-LLQIVDLASNKFSGRLSQKWLLTME 514 (650)
Q Consensus 436 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~ 514 (650)
..+++|++|++++|++.+..|..+.++++|++|++++|+++.. +..+..++ +|++|++++|++.|.++..|+.+|.
T Consensus 494 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~---p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l 570 (606)
T 3vq2_A 494 DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS---KGILQHFPKSLAFFNLTNNSVACICEHQKFLQWV 570 (606)
T ss_dssp TTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCE---ESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTT
T ss_pred cccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCccc---CHhHhhhcccCcEEEccCCCcccCCccHHHHHHH
Confidence 9999999999999999998899999999999999999999854 44477777 6999999999999999999887654
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-46 Score=404.16 Aligned_cols=514 Identities=19% Similarity=0.175 Sum_probs=364.9
Q ss_pred ecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccc
Q 043523 3 DLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFT 82 (650)
Q Consensus 3 ~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~ 82 (650)
+-++.+++ ..|..+. ++++.|++++|+++......|.++++|++|++++|.+.+..+..|.++++|++|++++|.++
T Consensus 13 ~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~ 89 (570)
T 2z63_A 13 QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (570)
T ss_dssp ECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC
Confidence 33445566 4555443 57999999999998888889999999999999999998777888999999999999999999
Q ss_pred cCCCcCccCCCCCcEEEccCCcccccCC-ccccCCCcCEEeCCCCcCccc-CChHHHhccccCCeEEccCCcCCCCcchh
Q 043523 83 GPIPPSMANLTQLFHMDFSSNHFSGHIP-SLHKSRNLKYLDLSFNNLSGG-ISSTFWEQLVNLNLVLLSHNSLNGSIPRS 160 (650)
Q Consensus 83 ~~~~~~l~~l~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 160 (650)
...|.+|.++++|++|++++|.+...++ .+..+++|++|++++|.+.+. ++.. ++++++|++|++++|.+....+..
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~~~~~ 168 (570)
T 2z63_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTD 168 (570)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCEECGGG
T ss_pred ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccceecHHH
Confidence 8888899999999999999999987665 578889999999999998753 4555 789999999999999998777777
Q ss_pred ccCCCCC----CEEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCC
Q 043523 161 LFLLPNL----ETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSK 236 (650)
Q Consensus 161 l~~l~~L----~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 236 (650)
+..+++| +.+++++|.+....+.... ...|+.+++++|..........+..++.++...+....+.
T Consensus 169 ~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~-------- 238 (570)
T 2z63_A 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFK--EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR-------- 238 (570)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECC--------
T ss_pred ccchhccchhhhhcccCCCCceecCHHHhc--cCcceeEecccccccccchhhhhcCccccceeeecccccc--------
Confidence 8777777 8899999988754443322 2378888888875443222333466666666555432221
Q ss_pred CCCCCCCCCCCCCcEEEccCCcCCCCCChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccC-cCCCCCCCCC
Q 043523 237 PRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSN-QLRGNIPHMS 315 (650)
Q Consensus 237 ~~~l~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~-~l~~~~~~~~ 315 (650)
....++.+ .. ..+.....-.++. +++.++ .+.+..+
T Consensus 239 --------~~~~l~~~--~~--------~~~~~l~~l~l~~----------------------l~l~~~~~~~~~~~--- 275 (570)
T 2z63_A 239 --------NEGNLEKF--DK--------SALEGLCNLTIEE----------------------FRLAYLDYYLDDII--- 275 (570)
T ss_dssp --------CCSSCEEC--CT--------TTTGGGGGSEEEE----------------------EEEEETTEEESCST---
T ss_pred --------Cchhhhhc--ch--------hhhccccccchhh----------------------hhhhcchhhhhhch---
Confidence 11111110 00 0011111111222 233222 1111111
Q ss_pred CCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEE
Q 043523 316 TNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVL 395 (650)
Q Consensus 316 ~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 395 (650)
..+..+++++.++++++.+. .+|..+..+ +|+.|++++|.+. .+|. ...++|++|
T Consensus 276 ------------------~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~----~~l~~L~~L 330 (570)
T 2z63_A 276 ------------------DLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT----LKLKSLKRL 330 (570)
T ss_dssp ------------------TTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB----CBCSSCCEE
T ss_pred ------------------hhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc----ccccccCEE
Confidence 11112444445555544444 244445555 6666666666665 3333 123477777
Q ss_pred EccCccCCCcCCCcccCCCCCccEEEcCCCcccccc--chhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCc
Q 043523 396 NLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVV--PKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSN 473 (650)
Q Consensus 396 ~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n 473 (650)
++++|.+.+..+. ..+++|++|++++|.+.+.. +..+..+++|++|++++|++.+..+. +..+++|++|++++|
T Consensus 331 ~l~~n~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n 406 (570)
T 2z63_A 331 TFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHS 406 (570)
T ss_dssp EEESCBSCCBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTS
T ss_pred eCcCCcccccccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCC
Confidence 7777776644433 56777888888888877553 66777888888888888888875444 778888888888888
Q ss_pred ccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchh
Q 043523 474 NFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVET 553 (650)
Q Consensus 474 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 553 (650)
.+..... ...+.++++|++|++++|.+....+.
T Consensus 407 ~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~---------------------------------------------- 439 (570)
T 2z63_A 407 NLKQMSE-FSVFLSLRNLIYLDISHTHTRVAFNG---------------------------------------------- 439 (570)
T ss_dssp EEESCTT-SCTTTTCTTCCEEECTTSCCEECCTT----------------------------------------------
T ss_pred ccccccc-hhhhhcCCCCCEEeCcCCcccccchh----------------------------------------------
Confidence 8765431 24567788888888888876533221
Q ss_pred hcccCCCcccEEeCCCCccc-cCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCC
Q 043523 554 MLLKVPNIFTSIDFSSNNFE-GPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLN 632 (650)
Q Consensus 554 ~~~~~~~~l~~L~l~~~~~~-~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~ 632 (650)
.+..++.|++|++++|.+. +..+..+..+++|++|++++|++++..|.+|+.+++|++|++++|++++.++..|.+++
T Consensus 440 -~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 518 (570)
T 2z63_A 440 -IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLT 518 (570)
T ss_dssp -TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred -hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhccc
Confidence 2245778888888888886 45667888999999999999999988899999999999999999999998888999999
Q ss_pred CCCeEEccCCcCcccCCC
Q 043523 633 FLSVLNLSYNNLVGKIPT 650 (650)
Q Consensus 633 ~L~~L~l~~n~~~~~~p~ 650 (650)
+|+.|++++|++++..|.
T Consensus 519 ~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 519 SLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TCCEEECCSSCBCCCTTT
T ss_pred CCcEEEecCCcccCCCcc
Confidence 999999999999988773
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.1e-46 Score=417.05 Aligned_cols=540 Identities=20% Similarity=0.194 Sum_probs=369.1
Q ss_pred eecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCC-CCCCCCCCCCcEEEcCCCc
Q 043523 2 LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTL-PDSIGNLENLTWVEVRRCN 80 (650)
Q Consensus 2 L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~L~~~~ 80 (650)
.+.++++++ ..|. ..+++++|+|++|.++...+..|.++++|++|+|++|...+.+ |..|.++++|++|+|++|.
T Consensus 9 ~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 9 AFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred EEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 356778888 4454 4578999999999998888889999999999999999555444 7899999999999999999
Q ss_pred cccCCCcCccCCCCCcEEEccCCccccc-CCc--cccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCc
Q 043523 81 FTGPIPPSMANLTQLFHMDFSSNHFSGH-IPS--LHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSI 157 (650)
Q Consensus 81 l~~~~~~~l~~l~~L~~L~l~~~~i~~~-~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 157 (650)
+.+..|.+|.++++|++|++++|.+.+. ++. +..+++|++|++++|.+++..+...++++++|++|++++|.+....
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~ 164 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC 164 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC
Confidence 9988899999999999999999999863 333 7788999999999999986655445899999999999999998888
Q ss_pred chhccCC--CCCCEEEccCCcCCCCCchhhh-----cCCCCccEEEccCCcCCCCCchhHhhc--CCCCcEEeCCCCccc
Q 043523 158 PRSLFLL--PNLETLWLSNNQFENQLPEISN-----VSSSVLFDLDLSGNRLEGPVPISIIFE--LRNLYTLDLSSNKFS 228 (650)
Q Consensus 158 ~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~l~~~~~~~~~~~--l~~L~~L~l~~~~~~ 228 (650)
+..+..+ ++|+.|++++|.+....+.... .....|+.|++++|.+.+..+..+... .+.++.+.++.+.+.
T Consensus 165 ~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~ 244 (844)
T 3j0a_A 165 EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244 (844)
T ss_dssp SGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCB
T ss_pred HHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccc
Confidence 8888776 8899999999887753332111 111237777777777665555444222 134455555433221
Q ss_pred cccccCCCCCCCCCCCCCCCCcEEEccCCcCCCCCChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccCcCC
Q 043523 229 RLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLR 308 (650)
Q Consensus 229 ~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~ 308 (650)
. .+..+.+.+.....+.....++++.|++++|.+..++...
T Consensus 245 ~-----------------------~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~---------------- 285 (844)
T 3j0a_A 245 A-----------------------GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV---------------- 285 (844)
T ss_dssp C-----------------------SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC----------------
T ss_pred c-----------------------cccccccCCCChhhhhccccCCccEEECCCCcccccChhh----------------
Confidence 0 0001111111111111111223444444444443332111
Q ss_pred CCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhcc
Q 043523 309 GNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQS 388 (650)
Q Consensus 309 ~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 388 (650)
...+++|+.|++++|+++.++...+..+++|+.+++++|.+.+..+..+..+++|+.|++++|.+....+..+...
T Consensus 286 ---~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l- 361 (844)
T 3j0a_A 286 ---FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL- 361 (844)
T ss_dssp ---SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSC-
T ss_pred ---hhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCC-
Confidence 1122344444444444444433444446677777777777766666777777777777777777764444434332
Q ss_pred ccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccc-hhhhcCCCCCe
Q 043523 389 ETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFP-CWLGNASSLQV 467 (650)
Q Consensus 389 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~L~~ 467 (650)
++|++|++++|.+. . +..+++|+.|++++|+++ .+|.. ..+++.|++++|++.+... ..+..+++|++
T Consensus 362 -~~L~~L~Ls~N~l~-~-----i~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~ 430 (844)
T 3j0a_A 362 -EKLQTLDLRDNALT-T-----IHFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQI 430 (844)
T ss_dssp -CCCCEEEEETCCSC-C-----CSSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCE
T ss_pred -CCCCEEECCCCCCC-c-----ccCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccce
Confidence 37777777777765 2 223667888888888877 33332 4578888888888877432 23457888888
Q ss_pred EEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEe
Q 043523 468 LVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVT 547 (650)
Q Consensus 468 L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 547 (650)
|++++|+++.... ...+..+++|++|++++|.+....+.
T Consensus 431 L~Ls~N~l~~~~~-~~~~~~~~~L~~L~Ls~N~l~~~~~~---------------------------------------- 469 (844)
T 3j0a_A 431 LILNQNRFSSCSG-DQTPSENPSLEQLFLGENMLQLAWET---------------------------------------- 469 (844)
T ss_dssp EEEESCCCCCCCS-SSSSCSCTTCCBCEEESCCCSSSCCS----------------------------------------
T ss_pred eeCCCCccccccc-ccccccCCccccccCCCCcccccccc----------------------------------------
Confidence 8888888874431 22345578888888888876522110
Q ss_pred eccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCcc
Q 043523 548 VKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQ 627 (650)
Q Consensus 548 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 627 (650)
+.....+..++.|+.|++++|.++++.+..+..+++|+.|+|++|++++..+..+. ++|++|++++|++++..|..
T Consensus 470 --~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~ 545 (844)
T 3j0a_A 470 --ELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV 545 (844)
T ss_dssp --CCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC
T ss_pred --ccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH
Confidence 01112234568889999999999988888899999999999999999977666655 89999999999999888876
Q ss_pred ccCCCCCCeEEccCCcCccc
Q 043523 628 LASLNFLSVLNLSYNNLVGK 647 (650)
Q Consensus 628 l~~l~~L~~L~l~~n~~~~~ 647 (650)
| ++|+.+++++|++...
T Consensus 546 ~---~~L~~l~l~~Np~~C~ 562 (844)
T 3j0a_A 546 F---VSLSVLDITHNKFICE 562 (844)
T ss_dssp C---SSCCEEEEEEECCCCS
T ss_pred h---CCcCEEEecCCCcccc
Confidence 5 4788999999988653
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3e-46 Score=399.61 Aligned_cols=497 Identities=17% Similarity=0.155 Sum_probs=315.6
Q ss_pred ecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccc
Q 043523 3 DLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFT 82 (650)
Q Consensus 3 ~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~ 82 (650)
+.++++++ ..|..+. ++|++|++++|+++...+..|.++++|++|++++|.+.+..|.+|+++++|++|++++|.++
T Consensus 11 ~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 87 (549)
T 2z81_A 11 DGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87 (549)
T ss_dssp ECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred ECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC
Confidence 44556666 3444332 67777777777776666667777777777777777777666677777777777777777777
Q ss_pred cCCCcCccCCCCCcEEEccCCcccc--cCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchh
Q 043523 83 GPIPPSMANLTQLFHMDFSSNHFSG--HIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRS 160 (650)
Q Consensus 83 ~~~~~~l~~l~~L~~L~l~~~~i~~--~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 160 (650)
+..|..|+++++|++|++++|.+.. .++.+..+++|++|++++|...+.++...++++++|++|++++|.+....+..
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 167 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS 167 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh
Confidence 5555567777777777777777764 23456666777777777776333444333566667777777766666555566
Q ss_pred ccCCCCCCEEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCC
Q 043523 161 LFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVI 240 (650)
Q Consensus 161 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l 240 (650)
+..+++|++|++++|.+. .++...+..+++|+.|++++|.++..... ..
T Consensus 168 l~~l~~L~~L~l~~n~~~--------------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~ 216 (549)
T 2z81_A 168 LKSIRDIHHLTLHLSESA--------------------------FLLEIFADILSSVRYLELRDTNLARFQFS-----PL 216 (549)
T ss_dssp TTTCSEEEEEEEECSBST--------------------------THHHHHHHSTTTBSEEEEESCBCTTCCCC-----CC
T ss_pred hhccccCceEecccCccc--------------------------ccchhhHhhcccccEEEccCCcccccccc-----cc
Confidence 666666666666555443 34444445567777777777766533211 11
Q ss_pred CCCCCCCCCcEEEccCCcCCCCCChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccE
Q 043523 241 PILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSY 320 (650)
Q Consensus 241 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~ 320 (650)
+....+++|+.|+++++.+.+..+..+... ...++.++.+++++|.+.+......
T Consensus 217 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~--------------------~~~~~~L~~l~l~~~~~~~~~~~~~----- 271 (549)
T 2z81_A 217 PVDEVSSPMKKLAFRGSVLTDESFNELLKL--------------------LRYILELSEVEFDDCTLNGLGDFNP----- 271 (549)
T ss_dssp SSCCCCCCCCEEEEESCEEEHHHHHHHHGG--------------------GGGCTTCCEEEEESCEEECCSCCCC-----
T ss_pred chhhhhhcccceeccccccchhHHHHHHHH--------------------hhhhccccccccccccccccccccc-----
Confidence 123456678888888887765444433321 1123444555555554332110000
Q ss_pred EecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCc
Q 043523 321 VDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRN 400 (650)
Q Consensus 321 L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 400 (650)
........+++++.+.+.++.+..... ....+..... ..+|++|++++|
T Consensus 272 ----------~~~~~~~~l~~L~~L~l~~~~i~~~~~-------------------~~~l~~~~~~--~~~L~~L~l~~n 320 (549)
T 2z81_A 272 ----------SESDVVSELGKVETVTIRRLHIPQFYL-------------------FYDLSTVYSL--LEKVKRITVENS 320 (549)
T ss_dssp ----------CTTTCCCCCTTCCEEEEESCBCSCGGG-------------------SCCCCHHHHH--STTCCEEEEESS
T ss_pred ----------cchhhhhhhcccccccccccccchhhh-------------------cccchhhhhh--cccceEEEeccC
Confidence 000001123445555554443321100 0011111111 126777777777
Q ss_pred cCCCcCCCcccCCCCCccEEEcCCCccccccch---hcccCCCCCEEeCCCCccccccc--hhhhcCCCCCeEEccCccc
Q 043523 401 NLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPK---SLANCNMLQVLDLKNNHISDNFP--CWLGNASSLQVLVLQSNNF 475 (650)
Q Consensus 401 ~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~~~~L~~L~l~~n~~ 475 (650)
.+. .++...+..+++|++|++++|++.+..+. .+..+++|++|++++|++.+..+ ..+..+++|++|++++|++
T Consensus 321 ~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 399 (549)
T 2z81_A 321 KVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF 399 (549)
T ss_dssp CCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred ccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCC
Confidence 765 56655456677888888888887765432 36677888888888888877432 4577788888888888887
Q ss_pred ceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhc
Q 043523 476 SGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETML 555 (650)
Q Consensus 476 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (650)
+. ++..+..+++|++|++++|.+....
T Consensus 400 ~~---lp~~~~~~~~L~~L~Ls~N~l~~l~-------------------------------------------------- 426 (549)
T 2z81_A 400 HP---MPDSCQWPEKMRFLNLSSTGIRVVK-------------------------------------------------- 426 (549)
T ss_dssp CC---CCSCCCCCTTCCEEECTTSCCSCCC--------------------------------------------------
T ss_pred cc---CChhhcccccccEEECCCCCccccc--------------------------------------------------
Confidence 63 3566677788888888888764210
Q ss_pred ccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCC
Q 043523 556 LKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLS 635 (650)
Q Consensus 556 ~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~ 635 (650)
...++.|++|++++|.+++.. ..+++|++|++++|+++ .+|. ...+++|++|++++|++++.+|+.+.++++|+
T Consensus 427 ~~~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 500 (549)
T 2z81_A 427 TCIPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ 500 (549)
T ss_dssp TTSCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCC
T ss_pred chhcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccC
Confidence 012467888889888887543 56789999999999998 5555 46788999999999999988888899999999
Q ss_pred eEEccCCcCcccCC
Q 043523 636 VLNLSYNNLVGKIP 649 (650)
Q Consensus 636 ~L~l~~n~~~~~~p 649 (650)
.|++++|++++..|
T Consensus 501 ~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 501 KIWLHTNPWDCSCP 514 (549)
T ss_dssp EEECCSSCBCCCHH
T ss_pred EEEecCCCccCCCc
Confidence 99999999887654
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=8.4e-46 Score=413.52 Aligned_cols=488 Identities=21% Similarity=0.212 Sum_probs=395.6
Q ss_pred CeecCCCCCcccccccccCCCCCCEEeCCCCCC-CCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCC
Q 043523 1 TLDLSECGLQGKFPEKILQVPTLETLDLSENQL-LQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRC 79 (650)
Q Consensus 1 ~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i-~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~ 79 (650)
+|++++|.|++..+..|+++++|++|++++|.. ....+..|.++++|++|+|++|.+.+..|..|.++++|++|++++|
T Consensus 28 ~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n 107 (844)
T 3j0a_A 28 RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC 107 (844)
T ss_dssp EEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC
T ss_pred EEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC
Confidence 489999999999999999999999999999954 3445678999999999999999999888999999999999999999
Q ss_pred ccccCCCcC--ccCCCCCcEEEccCCcccccCC--ccccCCCcCEEeCCCCcCcccCChHHHhcc--ccCCeEEccCCcC
Q 043523 80 NFTGPIPPS--MANLTQLFHMDFSSNHFSGHIP--SLHKSRNLKYLDLSFNNLSGGISSTFWEQL--VNLNLVLLSHNSL 153 (650)
Q Consensus 80 ~l~~~~~~~--l~~l~~L~~L~l~~~~i~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l--~~L~~L~l~~~~~ 153 (650)
.+++..|.. +.++++|++|++++|.+....+ .+..+++|++|++++|.+.+..+.. +..+ ++|+.|++++|.+
T Consensus 108 ~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~-l~~l~~~~L~~L~L~~n~l 186 (844)
T 3j0a_A 108 GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-LEPLQGKTLSFFSLAANSL 186 (844)
T ss_dssp CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG-GHHHHHCSSCCCEECCSBS
T ss_pred CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH-cccccCCccceEECCCCcc
Confidence 999766654 9999999999999999987643 5888999999999999998666655 6666 8999999999999
Q ss_pred CCCcchhccCCCC------CCEEEccCCcCCCCCchhhh-------------------------------------cCCC
Q 043523 154 NGSIPRSLFLLPN------LETLWLSNNQFENQLPEISN-------------------------------------VSSS 190 (650)
Q Consensus 154 ~~~~~~~l~~l~~------L~~L~l~~~~~~~~~~~~~~-------------------------------------~~~~ 190 (650)
....+..+..+++ |+.|++++|.+....+.... ...+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~ 266 (844)
T 3j0a_A 187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS 266 (844)
T ss_dssp CCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTS
T ss_pred ccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccC
Confidence 8877776666555 99999999966533221111 1136
Q ss_pred CccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccCCcCCCCCChhHHhh
Q 043523 191 VLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEV 270 (650)
Q Consensus 191 ~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~ 270 (650)
+++.|++++|.+.+ ++...|..+++|+.|++++|.+..+... .+..+++|++|++++|.+.+..+.++...
T Consensus 267 ~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~--------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 337 (844)
T 3j0a_A 267 SVRHLDLSHGFVFS-LNSRVFETLKDLKVLNLAYNKINKIADE--------AFYGLDNLQVLNLSYNLLGELYSSNFYGL 337 (844)
T ss_dssp CCCEEECTTCCCCE-ECSCCSSSCCCCCEEEEESCCCCEECTT--------TTTTCSSCCEEEEESCCCSCCCSCSCSSC
T ss_pred CccEEECCCCcccc-cChhhhhcCCCCCEEECCCCcCCCCChH--------HhcCCCCCCEEECCCCCCCccCHHHhcCC
Confidence 78899999998874 4444558889999999999988754322 26778899999999999886667666544
Q ss_pred cCcccceeeeccccccCCcCc--ccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEcc
Q 043523 271 GNGNLNFLNLSHNLLVSLQEP--YSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAA 348 (650)
Q Consensus 271 ~~~~L~~L~l~~~~l~~l~~~--~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~ 348 (650)
++|+.|++++|.+..++.. ..+++|+.|++++|.+.+... +++++.+++++|+++.++.. ...++.++++
T Consensus 338 --~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~--~~~L~~L~l~~N~l~~l~~~----~~~l~~L~ls 409 (844)
T 3j0a_A 338 --PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF--IPSIPDIFLSGNKLVTLPKI----NLTANLIHLS 409 (844)
T ss_dssp --TTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS--CCSCSEEEEESCCCCCCCCC----CTTCCEEECC
T ss_pred --CCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC--CCCcchhccCCCCccccccc----ccccceeecc
Confidence 4599999999988887653 358999999999998875433 67899999999999877654 5678999999
Q ss_pred CCccccccc-ccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcC----CCcccCCCCCccEEEcC
Q 043523 349 NNSLVGVIP-ESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTL----SDTIFPRNCGLQILDLG 423 (650)
Q Consensus 349 ~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~l~~L~~L~ls 423 (650)
+|.+.+... ..+..+++|+.|++++|.+.+..+.... ...++|++|++++|.+.... ....|..+++|++|+++
T Consensus 410 ~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls 488 (844)
T 3j0a_A 410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP-SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLN 488 (844)
T ss_dssp SCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS-CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCC
T ss_pred cCccccCchhhhhhcCCccceeeCCCCccccccccccc-ccCCccccccCCCCccccccccccchhhhcCcccccEEECC
Confidence 998886533 3456899999999999998854333222 22459999999999987332 23458899999999999
Q ss_pred CCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCccccc
Q 043523 424 GNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSG 503 (650)
Q Consensus 424 ~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 503 (650)
+|++++..+..|..+++|++|+|++|+++.+.+..+. ++|+.|++++|++++.. +.. +++|+.+++++|++.|
T Consensus 489 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~--~~~---~~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 489 HNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPN--PDV---FVSLSVLDITHNKFIC 561 (844)
T ss_dssp HHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCC--SCC---CSSCCEEEEEEECCCC
T ss_pred CCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCC--hhH---hCCcCEEEecCCCccc
Confidence 9999988889999999999999999999997776665 89999999999998654 333 4689999999999999
Q ss_pred ccChHHHHhHH
Q 043523 504 RLSQKWLLTME 514 (650)
Q Consensus 504 ~~~~~~~~~l~ 514 (650)
.++..|+..+.
T Consensus 562 ~c~~~~f~~~~ 572 (844)
T 3j0a_A 562 ECELSTFINWL 572 (844)
T ss_dssp SSSCCSHHHHH
T ss_pred ccccHHHHHHH
Confidence 99988877654
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4e-45 Score=393.13 Aligned_cols=490 Identities=19% Similarity=0.192 Sum_probs=393.6
Q ss_pred CeecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCc
Q 043523 1 TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCN 80 (650)
Q Consensus 1 ~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 80 (650)
+|++++|.+++..+.+|.++++|++|++++|+++...+..|.++++|++|++++|.+.+..+..|+++++|++|++++|.
T Consensus 32 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 111 (570)
T 2z63_A 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111 (570)
T ss_dssp EEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred EEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccc
Confidence 38999999999989999999999999999999988878899999999999999999997778899999999999999999
Q ss_pred cccCCCcCccCCCCCcEEEccCCcccc--cCCccccCCCcCEEeCCCCcCcccCChHHHhccccC----CeEEccCCcCC
Q 043523 81 FTGPIPPSMANLTQLFHMDFSSNHFSG--HIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNL----NLVLLSHNSLN 154 (650)
Q Consensus 81 l~~~~~~~l~~l~~L~~L~l~~~~i~~--~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L----~~L~l~~~~~~ 154 (650)
++...+..++++++|++|++++|.+.. .+..+.++++|++|++++|.+++..+.. ++.+++| +.+++++|.+.
T Consensus 112 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~~~~~L~l~~n~l~ 190 (570)
T 2z63_A 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQMPLLNLSLDLSLNPMN 190 (570)
T ss_dssp CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGG-GHHHHTCTTCCCEEECTTCCCC
T ss_pred cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHH-ccchhccchhhhhcccCCCCce
Confidence 997666689999999999999999986 4567888999999999999998554444 7888888 89999999999
Q ss_pred CCcchhccCCCCCCEEEccCCcCCCCCchhhhcCCCCccEEEccCCcCC-----CCCchhHhhcCCC--CcEEeCCCC-c
Q 043523 155 GSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLE-----GPVPISIIFELRN--LYTLDLSSN-K 226 (650)
Q Consensus 155 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-----~~~~~~~~~~l~~--L~~L~l~~~-~ 226 (650)
...+.++... +|+.+++++|.............+..++...+....+. ..++...+..+++ ++.++++++ .
T Consensus 191 ~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~ 269 (570)
T 2z63_A 191 FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269 (570)
T ss_dssp EECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTE
T ss_pred ecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchh
Confidence 7777777665 89999999885432111122223444544433221111 1233333344443 344555444 2
Q ss_pred cccccccCCCCCCCCCCCCCCCCcEEEccCCcCCCCCChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccCc
Q 043523 227 FSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQ 306 (650)
Q Consensus 227 ~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~ 306 (650)
+.. .....+..+++|++|+++++.+. .+|.++... +|++|++++|.+..++. ..+++|+.+++++|.
T Consensus 270 ~~~--------~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~---~L~~L~l~~n~~~~l~~-~~l~~L~~L~l~~n~ 336 (570)
T 2z63_A 270 YLD--------DIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF---GWQHLELVNCKFGQFPT-LKLKSLKRLTFTSNK 336 (570)
T ss_dssp EES--------CSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC---CCSEEEEESCBCSSCCB-CBCSSCCEEEEESCB
T ss_pred hhh--------hchhhhcCcCcccEEEecCccch-hhhhhhccC---CccEEeeccCcccccCc-ccccccCEEeCcCCc
Confidence 221 11122777889999999999987 677766544 69999999999988776 578999999999998
Q ss_pred CCCCCC-CCCCCccEEecCCCcCCCCc--hhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCCh-
Q 043523 307 LRGNIP-HMSTNTSYVDYSNNHFTFIP--ADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPA- 382 (650)
Q Consensus 307 l~~~~~-~~~~~L~~L~l~~~~i~~~~--~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~- 382 (650)
+.+..+ ..+++|+++++++|+++... ...+..+++|+.+++++|.+.+..+. +..+++|+.|++++|.+.+..+.
T Consensus 337 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~ 415 (570)
T 2z63_A 337 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFS 415 (570)
T ss_dssp SCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSC
T ss_pred cccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchh
Confidence 876544 56789999999999998653 33344589999999999999876655 89999999999999998865542
Q ss_pred hhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccc-cccchhcccCCCCCEEeCCCCccccccchhhhc
Q 043523 383 CLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQ-GVVPKSLANCNMLQVLDLKNNHISDNFPCWLGN 461 (650)
Q Consensus 383 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 461 (650)
.+.. .++|++|++++|.+.+..+ ..|..+++|++|++++|.+. +..|..+..+++|++|++++|++.+..|..+..
T Consensus 416 ~~~~--l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 492 (570)
T 2z63_A 416 VFLS--LRNLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492 (570)
T ss_dssp TTTT--CTTCCEEECTTSCCEECCT-TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred hhhc--CCCCCEEeCcCCcccccch-hhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhc
Confidence 3333 3499999999999985544 44999999999999999997 468889999999999999999999988999999
Q ss_pred CCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHH
Q 043523 462 ASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLL 511 (650)
Q Consensus 462 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 511 (650)
+++|++|++++|++++.. +..+..+++|++|++++|++.|.++..|+.
T Consensus 493 l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 540 (570)
T 2z63_A 493 LSSLQVLNMASNQLKSVP--DGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540 (570)
T ss_dssp CTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred ccCCCEEeCCCCcCCCCC--HHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence 999999999999998664 567889999999999999999999876653
No 14
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=7.6e-43 Score=381.03 Aligned_cols=529 Identities=20% Similarity=0.161 Sum_probs=339.9
Q ss_pred CCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCc
Q 043523 8 GLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPP 87 (650)
Q Consensus 8 ~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~ 87 (650)
+++ ..|..+. +.+++|||++|+|+......|.++++|++|+|++|.+++..+++|.++++|++|+|++|+++...+.
T Consensus 42 ~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~ 118 (635)
T 4g8a_A 42 NFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 118 (635)
T ss_dssp CCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGG
T ss_pred CcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHH
Confidence 344 4454332 3789999999999888888999999999999999999877778899999999999999999977677
Q ss_pred CccCCCCCcEEEccCCcccccCC-ccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCC
Q 043523 88 SMANLTQLFHMDFSSNHFSGHIP-SLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPN 166 (650)
Q Consensus 88 ~l~~l~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 166 (650)
+|.++++|++|++++|+++.+++ .+..+++|++|++++|.++......++..+++|++|++++|.++...+..+..+++
T Consensus 119 ~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~ 198 (635)
T 4g8a_A 119 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 198 (635)
T ss_dssp GGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT
T ss_pred HhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhh
Confidence 89999999999999999988776 47788999999999999875444444788999999999999998777776665444
Q ss_pred C----CEEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCC
Q 043523 167 L----ETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPI 242 (650)
Q Consensus 167 L----~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~ 242 (650)
+ ..++++.|.+....+... ....+..+++.++.....++...+..+..++...+..+........ .......
T Consensus 199 l~~~~~~~~ls~n~l~~i~~~~~--~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l--~~~~~~~ 274 (635)
T 4g8a_A 199 MPLLNLSLDLSLNPMNFIQPGAF--KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL--EKFDKSA 274 (635)
T ss_dssp CTTCCCEEECTTCCCCEECTTTT--TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCC--SCCCTTT
T ss_pred hhhhhhhhhcccCcccccCcccc--cchhhhhhhhhcccccccccchhhcCCccccccccccccccccccc--ccccccc
Confidence 3 467888887764333222 2345677888887655445555567777777766644322211000 0011111
Q ss_pred CCCCCCCcEEEccCCcCCCC---CChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCcc
Q 043523 243 LKNQSQLSGLDISNNQIPGE---IPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTS 319 (650)
Q Consensus 243 l~~~~~L~~L~l~~~~i~~~---~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~ 319 (650)
+.....+....+..+..... .+..+. ...+++.+.+.++.+..+........++.+++.+|.+.......+..++
T Consensus 275 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~--~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~ 352 (635)
T 4g8a_A 275 LEGLCNLTIEEFRLAYLDYYLDGIIDLFN--CLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLK 352 (635)
T ss_dssp TGGGGGSEEEEEEEECCCSCEEECTTTTG--GGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCC
T ss_pred cccccchhhhhhhhhhhcccccchhhhhh--hhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhh
Confidence 33344455444443332211 111111 1234777777777776666666666777777777766655555455555
Q ss_pred EEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccC
Q 043523 320 YVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGR 399 (650)
Q Consensus 320 ~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 399 (650)
.+++..+..... .....+++|+.+++++|.+..............+|+++++..
T Consensus 353 ~l~l~~n~~~~~--------------------------~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~ 406 (635)
T 4g8a_A 353 RLTFTSNKGGNA--------------------------FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSF 406 (635)
T ss_dssp EEEEESCCSCCB--------------------------CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCS
T ss_pred hcccccccCCCC--------------------------cccccccccccchhhccccccccccccchhhhhhhhhhhccc
Confidence 555554443322 122345566666666665543221111222223777777777
Q ss_pred ccCCCcCCCcccCCCCCccEEEcCCCcccccc-chhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCccccee
Q 043523 400 NNLNGTLSDTIFPRNCGLQILDLGGNQLQGVV-PKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGH 478 (650)
Q Consensus 400 ~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 478 (650)
+... ..+.. +..+++|+.+++.++...... ...+..+++++.+++++|.+....+..+..++.|++|++++|.+...
T Consensus 407 ~~~~-~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~ 484 (635)
T 4g8a_A 407 NGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 484 (635)
T ss_dssp CSEE-EECSC-CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred cccc-ccccc-ccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccc
Confidence 7655 22322 677788888888887665443 35677788888888888888887777788888888888888875432
Q ss_pred cCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccC
Q 043523 479 ISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKV 558 (650)
Q Consensus 479 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (650)
. .+..+..+++|++|++++|.++
T Consensus 485 ~-~~~~~~~l~~L~~L~Ls~N~L~-------------------------------------------------------- 507 (635)
T 4g8a_A 485 F-LPDIFTELRNLTFLDLSQCQLE-------------------------------------------------------- 507 (635)
T ss_dssp E-ECSCCTTCTTCCEEECTTSCCC--------------------------------------------------------
T ss_pred c-CchhhhhccccCEEECCCCccC--------------------------------------------------------
Confidence 1 1444555555555555555443
Q ss_pred CCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCC-CCCCeE
Q 043523 559 PNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASL-NFLSVL 637 (650)
Q Consensus 559 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l-~~L~~L 637 (650)
++.+..|.++++|++|+|++|++++..+.+|+++++|++|++++|++++..|+.+..+ ++|+.|
T Consensus 508 ---------------~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L 572 (635)
T 4g8a_A 508 ---------------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 572 (635)
T ss_dssp ---------------EECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEE
T ss_pred ---------------CcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEE
Confidence 3444455555555666666655555555555555566666666666655555555555 356666
Q ss_pred EccCCcCc
Q 043523 638 NLSYNNLV 645 (650)
Q Consensus 638 ~l~~n~~~ 645 (650)
++++||+.
T Consensus 573 ~L~~Np~~ 580 (635)
T 4g8a_A 573 NLTQNDFA 580 (635)
T ss_dssp ECTTCCBC
T ss_pred EeeCCCCc
Confidence 66655553
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.6e-43 Score=370.75 Aligned_cols=463 Identities=19% Similarity=0.170 Sum_probs=296.1
Q ss_pred eecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCcc
Q 043523 2 LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNF 81 (650)
Q Consensus 2 L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l 81 (650)
|++++|+++ ..|..+. ++|++|++++|.++...+..|.++++|++|++++|.+++..|..|+++++|++|++++|++
T Consensus 5 l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 5 VDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp EECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred EecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce
Confidence 455555555 3333333 5555555555555444334455555555555555555544455555555555555555555
Q ss_pred ccCCCcCccCCCCCcEEEccCCccccc--CCccccCCCcCEEeCCCCcCcccCChHHHhccccC--CeEEccCCcC--CC
Q 043523 82 TGPIPPSMANLTQLFHMDFSSNHFSGH--IPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNL--NLVLLSHNSL--NG 155 (650)
Q Consensus 82 ~~~~~~~l~~l~~L~~L~l~~~~i~~~--~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L--~~L~l~~~~~--~~ 155 (650)
+ .+|.. .+++|++|++++|.+... +..+..+++|++|++++|.+.+ .. +..+++| +.|++++|.+ ..
T Consensus 82 ~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~-~~~l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 82 V-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SS-VLPIAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp C-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GG-GGGGTTSCEEEEEEEECTTTTSS
T ss_pred e-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hh-ccccccceeeEEEeecccccccc
Confidence 5 23333 455555555555555431 2344455555555555555442 11 3444444 5555555544 33
Q ss_pred CcchhccCCCCCCEEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCc----ccccc
Q 043523 156 SIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNK----FSRLR 231 (650)
Q Consensus 156 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~----~~~~~ 231 (650)
..+..+..+.. ....+++++|.+.+.++...+..+++|+.+++++|. +..+.
T Consensus 155 ~~~~~l~~l~~------------------------~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 210 (520)
T 2z7x_B 155 EDPEGLQDFNT------------------------ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL 210 (520)
T ss_dssp CCTTTTTTCCE------------------------EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHH
T ss_pred ccccccccccc------------------------ceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceee
Confidence 33333332221 122344555555444554444556666666666654 00000
Q ss_pred ccCCCCCCCCCCCCCCCCcEEEccCCcCCCCCChhHHh-hcCcccceeeecccccc-CCcCc------ccCCcccEEEec
Q 043523 232 LASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWE-VGNGNLNFLNLSHNLLV-SLQEP------YSISSIRLLDLH 303 (650)
Q Consensus 232 ~~~~~~~~l~~l~~~~~L~~L~l~~~~i~~~~~~~~~~-~~~~~L~~L~l~~~~l~-~l~~~------~~l~~L~~L~l~ 303 (650)
+.++.+..+++|++|+++++.+.+..+..+.. ...++|++|++++|.+. .++.. ..++.|+.++++
T Consensus 211 ------~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~ 284 (520)
T 2z7x_B 211 ------SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVV 284 (520)
T ss_dssp ------HHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEE
T ss_pred ------cchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEecccc
Confidence 12223555667777777776655333222221 12236777888777776 45443 347788888888
Q ss_pred cCcCCCCCCC-------CCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccc
Q 043523 304 SNQLRGNIPH-------MSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNL 376 (650)
Q Consensus 304 ~~~l~~~~~~-------~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 376 (650)
+|.+ ..+. ...+++.+++++|++...+. ...+++++++++++|.+.+..|..+..+++|+.|++++|.+
T Consensus 285 ~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 360 (520)
T 2z7x_B 285 SDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360 (520)
T ss_dssp ECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCC
T ss_pred ccce--ecchhhhhcccccCceeEEEcCCCccccccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCcc
Confidence 8877 2221 01468888888888775542 13588999999999999998899999999999999999999
Q ss_pred cc--cCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccc
Q 043523 377 SG--TIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDN 454 (650)
Q Consensus 377 ~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 454 (650)
.+ .+|..+.. +++|++|++++|.+.+.++...|..+++|++|++++|++++..+..+. ++|++|++++|++..
T Consensus 361 ~~l~~~~~~~~~--l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~- 435 (520)
T 2z7x_B 361 KELSKIAEMTTQ--MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKS- 435 (520)
T ss_dssp CBHHHHHHHHTT--CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCC-
T ss_pred CccccchHHHhh--CCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccc-
Confidence 85 33444444 349999999999999768877799999999999999999877776654 799999999999996
Q ss_pred cchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHH-HhHHh
Q 043523 455 FPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWL-LTMEE 515 (650)
Q Consensus 455 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-~~l~~ 515 (650)
+|..+..+++|++|++++|+++... ...+..+++|++|++++|++.|.++..|+ .+|..
T Consensus 436 ip~~~~~l~~L~~L~L~~N~l~~l~--~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~ 495 (520)
T 2z7x_B 436 IPKQVVKLEALQELNVASNQLKSVP--DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 495 (520)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHH
T ss_pred cchhhhcCCCCCEEECCCCcCCccC--HHHhccCCcccEEECcCCCCcccCCchHHHHHHHH
Confidence 6666779999999999999998543 23478899999999999999999998887 66543
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1e-41 Score=364.59 Aligned_cols=472 Identities=17% Similarity=0.158 Sum_probs=342.6
Q ss_pred CeecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCc
Q 043523 1 TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCN 80 (650)
Q Consensus 1 ~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 80 (650)
+|++++|.+++..|.+|+++++|++|++++|+++...+..|.++++|++|++++|.+.+..+..|+++++|++|++++|.
T Consensus 30 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 109 (549)
T 2z81_A 30 SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 109 (549)
T ss_dssp EEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCC
T ss_pred EEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCc
Confidence 48999999999999999999999999999999988777899999999999999999997767779999999999999999
Q ss_pred ccc-CCCcCccCCCCCcEEEccCCc-ccccCC-ccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCc
Q 043523 81 FTG-PIPPSMANLTQLFHMDFSSNH-FSGHIP-SLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSI 157 (650)
Q Consensus 81 l~~-~~~~~l~~l~~L~~L~l~~~~-i~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 157 (650)
+++ ..|..++++++|++|++++|. +...++ .+..+++|++|++++|.+++..+.. +..+++|++|++++|.+....
T Consensus 110 l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~ 188 (549)
T 2z81_A 110 YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHLSESAFLL 188 (549)
T ss_dssp CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECSBSTTHH
T ss_pred ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEecccCcccccc
Confidence 986 356789999999999999998 555543 6888999999999999998766666 789999999999999987544
Q ss_pred chhccCCCCCCEEEccCCcCCCCC--chhhhcCCCCccEEEccCCcCCCCCchhH---hhcCCCCcEEeCCCCccccccc
Q 043523 158 PRSLFLLPNLETLWLSNNQFENQL--PEISNVSSSVLFDLDLSGNRLEGPVPISI---IFELRNLYTLDLSSNKFSRLRL 232 (650)
Q Consensus 158 ~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~l~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~ 232 (650)
...+..+++|++|++++|.+.... +......++.|+.++++++.+.+..+..+ +..+++|+.+++++|.+..+..
T Consensus 189 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~ 268 (549)
T 2z81_A 189 EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD 268 (549)
T ss_dssp HHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSC
T ss_pred hhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccc
Confidence 444467999999999999987532 12223347889999999998875444333 2567899999999998764321
Q ss_pred cCCCCCCCCCCCCCCCCcEEEccCCcCCCC-----CChhHHhhcCcccceeeeccccccCCcCcc--cCCcccEEEeccC
Q 043523 233 ASSKPRVIPILKNQSQLSGLDISNNQIPGE-----IPNWIWEVGNGNLNFLNLSHNLLVSLQEPY--SISSIRLLDLHSN 305 (650)
Q Consensus 233 ~~~~~~~l~~l~~~~~L~~L~l~~~~i~~~-----~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~--~l~~L~~L~l~~~ 305 (650)
. .......+..+++++.+++.++.+... .+.... ..++++.|++++|.+..+|... .+++|+.|++++|
T Consensus 269 ~--~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~--~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N 344 (549)
T 2z81_A 269 F--NPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS--LLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344 (549)
T ss_dssp C--CCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHH--HSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSS
T ss_pred c--cccchhhhhhhcccccccccccccchhhhcccchhhhh--hcccceEEEeccCccccCCHHHHhcCccccEEEccCC
Confidence 1 112223367778899999998876531 111111 1245888888888887776554 3777888888777
Q ss_pred cCCCCC------CCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCcccccc
Q 043523 306 QLRGNI------PHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGT 379 (650)
Q Consensus 306 ~l~~~~------~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 379 (650)
.+.+.. ...+++|++|++++|+++.++.. +..+..+++|+.|++++|.+. .
T Consensus 345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----------------------~~~~~~l~~L~~L~Ls~N~l~-~ 401 (549)
T 2z81_A 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKT----------------------GEILLTLKNLTSLDISRNTFH-P 401 (549)
T ss_dssp CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHH----------------------HHHGGGCTTCCEEECTTCCCC-C
T ss_pred ccccccccchhhhhccccCcEEEccCCcccccccc----------------------hhhhhcCCCCCEEECCCCCCc-c
Confidence 776432 22344555555555555443320 123445555555555555554 3
Q ss_pred CChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhh
Q 043523 380 IPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWL 459 (650)
Q Consensus 380 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 459 (650)
+|..+... ++|++|++++|.+. .++.... ++|++|++++|++++.. ..+++|++|+|++|+++. +|. .
T Consensus 402 lp~~~~~~--~~L~~L~Ls~N~l~-~l~~~~~---~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~-ip~-~ 469 (549)
T 2z81_A 402 MPDSCQWP--EKMRFLNLSSTGIR-VVKTCIP---QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKT-LPD-A 469 (549)
T ss_dssp CCSCCCCC--TTCCEEECTTSCCS-CCCTTSC---TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSS-CCC-G
T ss_pred CChhhccc--ccccEEECCCCCcc-cccchhc---CCceEEECCCCChhhhc----ccCChhcEEECCCCccCc-CCC-c
Confidence 44333222 26666666666655 3333211 46888888888777432 467888888888888886 443 4
Q ss_pred hcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccC-hHHHHhHH
Q 043523 460 GNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLS-QKWLLTME 514 (650)
Q Consensus 460 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~l~ 514 (650)
..+++|++|++++|++++.. +..+..+++|++|++++|++.|.++ ..|+.+|.
T Consensus 470 ~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~l 523 (549)
T 2z81_A 470 SLFPVLLVMKISRNQLKSVP--DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 523 (549)
T ss_dssp GGCTTCCEEECCSSCCCCCC--TTGGGGCTTCCEEECCSSCBCCCHHHHHHHHHHH
T ss_pred ccCccCCEEecCCCccCCcC--HHHHhcCcccCEEEecCCCccCCCccHHHHHHHH
Confidence 56888888888888887554 5557788899999999999988887 45555554
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.4e-41 Score=369.12 Aligned_cols=492 Identities=21% Similarity=0.167 Sum_probs=375.1
Q ss_pred CeecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCc
Q 043523 1 TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCN 80 (650)
Q Consensus 1 ~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 80 (650)
+||+++|.|+++.+.+|.++++|++|+|++|+|+.....+|.++++|++|+|++|++++..+..|.++++|++|++++|+
T Consensus 56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~ 135 (635)
T 4g8a_A 56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 135 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSC
T ss_pred EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCc
Confidence 48999999998889999999999999999999988888899999999999999999996666789999999999999999
Q ss_pred cccCCCcCccCCCCCcEEEccCCccccc--CCccccCCCcCEEeCCCCcCcccCChHHHhccccCC----eEEccCCcCC
Q 043523 81 FTGPIPPSMANLTQLFHMDFSSNHFSGH--IPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLN----LVLLSHNSLN 154 (650)
Q Consensus 81 l~~~~~~~l~~l~~L~~L~l~~~~i~~~--~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~----~L~l~~~~~~ 154 (650)
+++..+.+|+++++|++|++++|.+... +..+..+++|++|++++|.+++..+.. ++.+.+++ .++++.|.+.
T Consensus 136 l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-l~~L~~l~~~~~~~~ls~n~l~ 214 (635)
T 4g8a_A 136 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQMPLLNLSLDLSLNPMN 214 (635)
T ss_dssp CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG-GHHHHTCTTCCCEEECTTCCCC
T ss_pred CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc-ccchhhhhhhhhhhhcccCccc
Confidence 9977777899999999999999998753 346678899999999999998555444 56665544 6888888887
Q ss_pred CCcchhccCCCCCCEEEccCCcCCCCCchhhhcCCCCccEEEccCCc------CCCCCch--------------------
Q 043523 155 GSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNR------LEGPVPI-------------------- 208 (650)
Q Consensus 155 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------l~~~~~~-------------------- 208 (650)
...+. ......++.+++.+|................++...+..+. +. ....
T Consensus 215 ~i~~~-~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~-~~~~~~~~~~~~l~~~~l~~~~~~ 292 (635)
T 4g8a_A 215 FIQPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE-KFDKSALEGLCNLTIEEFRLAYLD 292 (635)
T ss_dssp EECTT-TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS-CCCTTTTGGGGGSEEEEEEEECCC
T ss_pred ccCcc-cccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccc-cccccccccccchhhhhhhhhhhc
Confidence 44433 33344556677776644321112122223333333221111 11 1111
Q ss_pred -------hHhhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccCCcCCCCCChhHHhhcCcccceeeec
Q 043523 209 -------SIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLS 281 (650)
Q Consensus 209 -------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~ 281 (650)
..+....+++.+.+.++.+.. +..+.....++.|++.++.+....+. ....++.+.+.
T Consensus 293 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~----------~~~~~~~~~L~~L~l~~~~~~~~~~~-----~l~~L~~l~l~ 357 (635)
T 4g8a_A 293 YYLDGIIDLFNCLTNVSSFSLVSVTIER----------VKDFSYNFGWQHLELVNCKFGQFPTL-----KLKSLKRLTFT 357 (635)
T ss_dssp SCEEECTTTTGGGTTCSEEEEESCEEEE----------CGGGGSCCCCSEEEEESCEESSCCCC-----BCTTCCEEEEE
T ss_pred ccccchhhhhhhhccccccccccccccc----------ccccccchhhhhhhcccccccCcCcc-----cchhhhhcccc
Confidence 112333445555555444332 12244556788888888877643332 22458888888
Q ss_pred cccccCCcCcccCCcccEEEeccCcCCCCCC-----CCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccc
Q 043523 282 HNLLVSLQEPYSISSIRLLDLHSNQLRGNIP-----HMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVI 356 (650)
Q Consensus 282 ~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~-----~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~ 356 (650)
.+..........+++++.+++++|.+..... ....+++++++..+.+...+..+. .++.++.+++..+......
T Consensus 358 ~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~-~l~~L~~l~l~~~~~~~~~ 436 (635)
T 4g8a_A 358 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMS 436 (635)
T ss_dssp SCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCT-TCTTCCEEECTTSEEESTT
T ss_pred cccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccccccc-ccccccchhhhhccccccc
Confidence 8877777766778899999999887753211 234678888888888775555444 4889999999988776655
Q ss_pred c-ccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhc
Q 043523 357 P-ESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSL 435 (650)
Q Consensus 357 ~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~ 435 (650)
+ ..+..+.+++.++++.|.+....+..+.... .++.|++++|.+.+.+....|..+++|++|++++|++++..|.+|
T Consensus 437 ~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~--~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f 514 (635)
T 4g8a_A 437 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS--SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 514 (635)
T ss_dssp SSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT--TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred cccccccccccccccccccccccccccccccch--hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHH
Confidence 4 4567889999999999999877666655544 999999999987656666669999999999999999998889999
Q ss_pred ccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCC-CCCCeeeCCCcccccccChHHHHhHH
Q 043523 436 ANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSW-PLLQIVDLASNKFSGRLSQKWLLTME 514 (650)
Q Consensus 436 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~l~ 514 (650)
.++++|++|+|++|++..+.+..|.++++|++|++++|++++.. +..+..+ ++|++|++++|++.|.|...|+.+|.
T Consensus 515 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl 592 (635)
T 4g8a_A 515 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK--KQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI 592 (635)
T ss_dssp TTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCC--SSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHH
T ss_pred cCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCC--HHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHH
Confidence 99999999999999999988999999999999999999998775 6677777 68999999999999999999988775
Q ss_pred h
Q 043523 515 E 515 (650)
Q Consensus 515 ~ 515 (650)
+
T Consensus 593 ~ 593 (635)
T 4g8a_A 593 K 593 (635)
T ss_dssp H
T ss_pred H
Confidence 3
No 18
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5e-41 Score=358.99 Aligned_cols=400 Identities=17% Similarity=0.154 Sum_probs=246.5
Q ss_pred CCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEE
Q 043523 19 QVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHM 98 (650)
Q Consensus 19 ~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L 98 (650)
.+...++++++++.++.+. ..+. ++|++|++++|.+.+..+..|.++++|++|++++|++++..|.+|.++++|++|
T Consensus 29 ~~~~~~~l~ls~~~L~~ip-~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 29 SNELESMVDYSNRNLTHVP-KDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp ----CCEEECTTSCCCSCC-TTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred ccCCCcEEEcCCCCCccCC-CCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 3445588999999886543 3333 789999999999887667789999999999999999988888889999999999
Q ss_pred EccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCC--CEEEccCCc
Q 043523 99 DFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNL--ETLWLSNNQ 176 (650)
Q Consensus 99 ~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~ 176 (650)
++++|+++.+++. .+++|++|++++|.+++......++++++|++|++++|.+... .+..++++ +.|++++|.
T Consensus 106 ~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 106 DVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp ECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESS
T ss_pred ECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccc
Confidence 9999998866655 7889999999999887532223378888888888888888753 33444444 888888877
Q ss_pred C--CCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEc
Q 043523 177 F--ENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDI 254 (650)
Q Consensus 177 ~--~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l 254 (650)
+ ....+.....-....-.+++++|.+.+.++...+..+++|+.+++++|........ ..++.+...++++.+++
T Consensus 181 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~----~~~~~l~~l~~L~~L~L 256 (562)
T 3a79_B 181 YHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLM----TFLSELTRGPTLLNVTL 256 (562)
T ss_dssp CCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHH----HHHHHHHSCSSCEEEEE
T ss_pred ccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHH----HHHHHHhccCcceEEEe
Confidence 6 43222211110001113455555544444433333444444444444321000000 00000122222222222
Q ss_pred cCCcCCCCCChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchh
Q 043523 255 SNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPAD 334 (650)
Q Consensus 255 ~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~ 334 (650)
+++.+. ++.+..++..
T Consensus 257 ~~~~l~----------------------------------------------------------------~~~~~~~~~~ 272 (562)
T 3a79_B 257 QHIETT----------------------------------------------------------------WKCSVKLFQF 272 (562)
T ss_dssp EEEEEC----------------------------------------------------------------HHHHHHHHHH
T ss_pred cCCcCc----------------------------------------------------------------HHHHHHHHHh
Confidence 222211 1111111111
Q ss_pred hhhccCCccEEEccCCcccccccccc-----cCCCcccEEECcCccccccCChhhhhc--cccCccEEEccCccCCCcCC
Q 043523 335 IGNFMSETEYFFAANNSLVGVIPESV-----CKGIYFQVLDLSNNNLSGTIPACLIAQ--SETTLGVLNLGRNNLNGTLS 407 (650)
Q Consensus 335 ~~~~~~~l~~l~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~ 407 (650)
. ..++++++++++|.+.+.+|..+ ..++.|+.+++..+.+ .+|...... ...+|++|++++|.+....
T Consensus 273 ~--~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~- 347 (562)
T 3a79_B 273 F--WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV- 347 (562)
T ss_dssp H--TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC-
T ss_pred h--hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc-
Confidence 1 12244444455554444444444 4455555556655555 334221111 1126899999999875221
Q ss_pred CcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCcccccc--chhhhcCCCCCeEEccCcccceecCCCCCC
Q 043523 408 DTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNF--PCWLGNASSLQVLVLQSNNFSGHISCPRNN 485 (650)
Q Consensus 408 ~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 485 (650)
....+++|++|++++|.+++..|..+..+++|++|++++|++.++. +..+..+++|++|++++|++++... ...+
T Consensus 348 --~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~ 424 (562)
T 3a79_B 348 --CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY-DRTC 424 (562)
T ss_dssp --CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCS-SCCC
T ss_pred --CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccC-hhhh
Confidence 1367888999999999999878888999999999999999998733 4667889999999999999875221 3346
Q ss_pred CCCCCCCeeeCCCcccc
Q 043523 486 VSWPLLQIVDLASNKFS 502 (650)
Q Consensus 486 ~~~~~L~~L~l~~n~~~ 502 (650)
..+++|++|++++|.++
T Consensus 425 ~~l~~L~~L~l~~n~l~ 441 (562)
T 3a79_B 425 AWAESILVLNLSSNMLT 441 (562)
T ss_dssp CCCTTCCEEECCSSCCC
T ss_pred cCcccCCEEECCCCCCC
Confidence 66788888888888764
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.5e-41 Score=358.57 Aligned_cols=436 Identities=21% Similarity=0.237 Sum_probs=307.0
Q ss_pred CeecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCc
Q 043523 1 TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCN 80 (650)
Q Consensus 1 ~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 80 (650)
+|++++|.+++..|.+|.++++|++|++++|+++...+..|.++++|++|+|++|.++ .+|.. .+++|++|++++|.
T Consensus 25 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~ 101 (520)
T 2z7x_B 25 ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNA 101 (520)
T ss_dssp EEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSC
T ss_pred EEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCc
Confidence 4899999999888899999999999999999998777789999999999999999998 56665 89999999999999
Q ss_pred ccc-CCCcCccCCCCCcEEEccCCcccccCCccccCCCc--CEEeCCCCcC--cccCChHHHhccc-cCCeEEccCCcCC
Q 043523 81 FTG-PIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNL--KYLDLSFNNL--SGGISSTFWEQLV-NLNLVLLSHNSLN 154 (650)
Q Consensus 81 l~~-~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L--~~L~l~~~~l--~~~~~~~~~~~l~-~L~~L~l~~~~~~ 154 (650)
+++ ..|..|+++++|++|++++|.+.. ..+..+++| ++|++++|.+ .+..+.. +..+. +...+++++|.+.
T Consensus 102 l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~-l~~l~~~~l~l~l~~n~~~ 178 (520)
T 2z7x_B 102 FDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEG-LQDFNTESLHIVFPTNKEF 178 (520)
T ss_dssp CSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTT-TTTCCEEEEEEECCSSSCC
T ss_pred cccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccccccccc-ccccccceEEEEeccCcch
Confidence 996 468899999999999999999875 456677888 9999999998 5555544 45444 3346677888766
Q ss_pred CCcc-hhccCCCCCCEEEccCCc-------CCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhh--cCCCCcEEeCCC
Q 043523 155 GSIP-RSLFLLPNLETLWLSNNQ-------FENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIF--ELRNLYTLDLSS 224 (650)
Q Consensus 155 ~~~~-~~l~~l~~L~~L~l~~~~-------~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~--~l~~L~~L~l~~ 224 (650)
...+ ..+..+++|+.+++++|. +.+.++ ....+++|+.++++++.+.+..+..+.. ..++|+.|++++
T Consensus 179 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 256 (520)
T 2z7x_B 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256 (520)
T ss_dssp CCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEE
T ss_pred hhhhhhhhhcccceeeccccccccccccceeecchh--hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeec
Confidence 5433 456778999999999886 222222 2234678899999888776433332221 246888999988
Q ss_pred Cccc-cccccCCCCCCCCCCCCCCCCcEEEccCCcCCCCCC-hhHHhh-cCcccceeeeccccccCCcCcccCCcccEEE
Q 043523 225 NKFS-RLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIP-NWIWEV-GNGNLNFLNLSHNLLVSLQEPYSISSIRLLD 301 (650)
Q Consensus 225 ~~~~-~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~i~~~~~-~~~~~~-~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~ 301 (650)
|.+. .++...+. .....+++|+.++++++.+ .+| .++... ...+++.|++++|.+...+....+++|++|+
T Consensus 257 n~l~~~~p~~~~~----~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 330 (520)
T 2z7x_B 257 VKLQGQLDFRDFD----YSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD 330 (520)
T ss_dssp EEEESCCCCCCCC----CCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEE
T ss_pred ccccCccccchhh----cccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEE
Confidence 8776 22111000 0016778888888888887 455 455443 2345777888777776655434566666666
Q ss_pred eccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccc--cccccccCCCcccEEECcCcccccc
Q 043523 302 LHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVG--VIPESVCKGIYFQVLDLSNNNLSGT 379 (650)
Q Consensus 302 l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~ 379 (650)
+++|.+.+..+. . +..+++|+.+++++|.+.+ ..|..+..+++|+.|++++|.+.+.
T Consensus 331 Ls~n~l~~~~~~--------------------~-~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~ 389 (520)
T 2z7x_B 331 FSNNLLTDTVFE--------------------N-CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD 389 (520)
T ss_dssp CCSSCCCTTTTT--------------------T-CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC
T ss_pred eECCccChhhhh--------------------h-hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc
Confidence 666666553332 1 1235566666666666654 3445566677777777777776654
Q ss_pred CChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhh
Q 043523 380 IPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWL 459 (650)
Q Consensus 380 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 459 (650)
+|..... ..++|++|++++|.+++..+.. +. ++|++|++++|+++ .+|..+..+++|++|++++|+++.+.+..+
T Consensus 390 l~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~-l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~ 464 (520)
T 2z7x_B 390 EKKGDCS-WTKSLLSLNMSSNILTDTIFRC-LP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIF 464 (520)
T ss_dssp GGGCSCC-CCTTCCEEECCSSCCCGGGGGS-CC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTT
T ss_pred cccchhc-cCccCCEEECcCCCCCcchhhh-hc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHh
Confidence 4443111 1237777777777776554443 22 57888888888887 566666688888888888888887444457
Q ss_pred hcCCCCCeEEccCcccc
Q 043523 460 GNASSLQVLVLQSNNFS 476 (650)
Q Consensus 460 ~~~~~L~~L~l~~n~~~ 476 (650)
..+++|++|++++|++.
T Consensus 465 ~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 465 DRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp TTCTTCCEEECCSSCBC
T ss_pred ccCCcccEEECcCCCCc
Confidence 77888888888888775
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8.1e-41 Score=360.75 Aligned_cols=333 Identities=19% Similarity=0.265 Sum_probs=177.5
Q ss_pred CchhHhh--cCCCCcEEeCCCCccccccccCCCCCCCCC-CCCCCCCcEEEccCCc-CCC-CCChhHHhhcCcccceeee
Q 043523 206 VPISIIF--ELRNLYTLDLSSNKFSRLRLASSKPRVIPI-LKNQSQLSGLDISNNQ-IPG-EIPNWIWEVGNGNLNFLNL 280 (650)
Q Consensus 206 ~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~-l~~~~~L~~L~l~~~~-i~~-~~~~~~~~~~~~~L~~L~l 280 (650)
+|..+ . ++++|+.|++++|.+. +.+|. +..+++|++|++++|. +.+ .+|..+.....
T Consensus 239 ip~~l-~~~~l~~L~~L~L~~n~l~---------~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~-------- 300 (636)
T 4eco_A 239 KTEDL-KWDNLKDLTDVEVYNCPNL---------TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALAD-------- 300 (636)
T ss_dssp TTSCC-CGGGCTTCCEEEEECCTTC---------SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHH--------
T ss_pred Cchhh-hhcccCCCCEEEecCCcCC---------ccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhc--------
Confidence 55544 4 7777888888777665 33333 6777788888888887 765 56666654310
Q ss_pred ccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCch-hhhhccCCccEEEccCCccccccccc
Q 043523 281 SHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPA-DIGNFMSETEYFFAANNSLVGVIPES 359 (650)
Q Consensus 281 ~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~~~ 359 (650)
...+++|+.|++++| +++.+|. ..+..+++|+.+++++|.+.+.+| .
T Consensus 301 ----------~~~l~~L~~L~L~~n---------------------~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~ 348 (636)
T 4eco_A 301 ----------APVGEKIQIIYIGYN---------------------NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A 348 (636)
T ss_dssp ----------SGGGGTCCEEECCSS---------------------CCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred ----------cccCCCCCEEECCCC---------------------cCCccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence 001122333333333 3333333 112224555555555555555555 5
Q ss_pred ccCCCcccEEECcCccccccCChhhhhccccC-ccEEEccCccCCCcCCCcccCCC--CCccEEEcCCCccccccchhcc
Q 043523 360 VCKGIYFQVLDLSNNNLSGTIPACLIAQSETT-LGVLNLGRNNLNGTLSDTIFPRN--CGLQILDLGGNQLQGVVPKSLA 436 (650)
Q Consensus 360 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~l--~~L~~L~ls~~~i~~~~~~~~~ 436 (650)
+..+++|+.|++++|.+. .+|..+.... + |++|++++|.+. .++.. +..+ ++|++|++++|.+.+..|..+.
T Consensus 349 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~--~~L~~L~Ls~N~l~-~lp~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 423 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQIT-EIPANFCGFT--EQVENLSFAHNKLK-YIPNI-FDAKSVSVMSAIDFSYNEIGSVDGKNFD 423 (636)
T ss_dssp CEEEEEESEEECCSSEEE-ECCTTSEEEC--TTCCEEECCSSCCS-SCCSC-CCTTCSSCEEEEECCSSCTTTTTTCSSC
T ss_pred hCCCCCCCEEECCCCccc-cccHhhhhhc--ccCcEEEccCCcCc-ccchh-hhhcccCccCEEECcCCcCCCcchhhhc
Confidence 555555566666655555 4444433332 4 666666666555 44432 3332 2566666666666555555555
Q ss_pred -------cCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCC-------CCCCCCeeeCCCcccc
Q 043523 437 -------NCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNV-------SWPLLQIVDLASNKFS 502 (650)
Q Consensus 437 -------~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-------~~~~L~~L~l~~n~~~ 502 (650)
.+++|++|++++|++..+.+..+..+++|++|++++|+++... ...+. ++++|++|++++|.++
T Consensus 424 ~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 501 (636)
T 4eco_A 424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIP--KNSLKDENENFKNTYLLTSIDLRFNKLT 501 (636)
T ss_dssp TTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCC--SSSSEETTEECTTGGGCCEEECCSSCCC
T ss_pred ccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcC--HHHhccccccccccCCccEEECcCCcCC
Confidence 5556666666666666543344444666666666666655221 11111 1225666666666554
Q ss_pred cccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccC
Q 043523 503 GRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGR 582 (650)
Q Consensus 503 ~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~ 582 (650)
.++..+ ....++.|+.|++++|.+.+ .+..+..
T Consensus 502 -~lp~~~---------------------------------------------~~~~l~~L~~L~Ls~N~l~~-ip~~~~~ 534 (636)
T 4eco_A 502 -KLSDDF---------------------------------------------RATTLPYLVGIDLSYNSFSK-FPTQPLN 534 (636)
T ss_dssp -BCCGGG---------------------------------------------STTTCTTCCEEECCSSCCSS-CCCGGGG
T ss_pred -ccChhh---------------------------------------------hhccCCCcCEEECCCCCCCC-cChhhhc
Confidence 222111 00135556666666666665 4455556
Q ss_pred CcCCCEEeC------ccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCcCc
Q 043523 583 FKSLYALNM------SHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV 645 (650)
Q Consensus 583 l~~L~~L~l------s~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~ 645 (650)
+++|++|++ ++|++.+..|.+++.+++|++|++++|+++ .+|..+. ++|+.|++++|++.
T Consensus 535 l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 535 SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTC
T ss_pred CCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCc
Confidence 666666666 345555566666666666666666666664 3333333 56666666666554
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=7.5e-40 Score=349.91 Aligned_cols=471 Identities=20% Similarity=0.182 Sum_probs=350.0
Q ss_pred CeecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCc
Q 043523 1 TLDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCN 80 (650)
Q Consensus 1 ~L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 80 (650)
++++++++++. .|..+. ++|++|++++|.++...+..|.++++|++|++++|.+++..|..|.++++|++|++++|+
T Consensus 35 ~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 111 (562)
T 3a79_B 35 MVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111 (562)
T ss_dssp EEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred EEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc
Confidence 37899999995 665553 899999999999987777799999999999999999998889999999999999999999
Q ss_pred cccCCCcCccCCCCCcEEEccCCcccccC--CccccCCCcCEEeCCCCcCcccCChHHHhccccC--CeEEccCCcC--C
Q 043523 81 FTGPIPPSMANLTQLFHMDFSSNHFSGHI--PSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNL--NLVLLSHNSL--N 154 (650)
Q Consensus 81 l~~~~~~~l~~l~~L~~L~l~~~~i~~~~--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L--~~L~l~~~~~--~ 154 (650)
++ .+|.. .+++|++|++++|++...+ ..+..+++|++|++++|.+... . +..+++| ++|++++|.+ .
T Consensus 112 l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~-~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 112 LQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---D-LLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp CC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---T-TGGGTTSCEEEEEEEESSCCCC
T ss_pred CC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---c-hhhhhhceeeEEEeeccccccc
Confidence 99 56655 8999999999999998754 5788999999999999998742 2 5566666 9999999998 7
Q ss_pred CCcchhccCCC-CCCEEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCC-CCc--hhHhhcCCCCcEEeCCCCccccc
Q 043523 155 GSIPRSLFLLP-NLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEG-PVP--ISIIFELRNLYTLDLSSNKFSRL 230 (650)
Q Consensus 155 ~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~--~~~~~~l~~L~~L~l~~~~~~~~ 230 (650)
...+..+..+. ..-.+++++|.+....+......+++|+.+++++|.... .++ ...+..+++|+.++++++.+...
T Consensus 185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~ 264 (562)
T 3a79_B 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264 (562)
T ss_dssp SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH
T ss_pred ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH
Confidence 67777777654 122567788887766666666678889999999885210 011 12347788999999888766532
Q ss_pred cccCCCCCCCCCCCCCCCCcEEEccCCcCCCCCChhHHhhcCcccceeeeccccccCC--cCcc-----cCCcccEEEec
Q 043523 231 RLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSL--QEPY-----SISSIRLLDLH 303 (650)
Q Consensus 231 ~~~~~~~~~l~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l--~~~~-----~l~~L~~L~l~ 303 (650)
.... ++.....++|++|++++|.+.+.+|.+++.....+++.|.+.++....+ +... ..++++.++++
T Consensus 265 ~~~~-----~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~ 339 (562)
T 3a79_B 265 CSVK-----LFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS 339 (562)
T ss_dssp HHHH-----HHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEE
T ss_pred HHHH-----HHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEcc
Confidence 2110 0011123478888888888877777665433223455544444333222 1000 01334455554
Q ss_pred cCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChh
Q 043523 304 SNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPAC 383 (650)
Q Consensus 304 ~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 383 (650)
+| ++..... ...+++++.+++++|.+.+..|..+..+++|+.|++++|.+.+..+..
T Consensus 340 ~n---------------------~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 396 (562)
T 3a79_B 340 DT---------------------PFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVA 396 (562)
T ss_dssp SS---------------------CCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHH
T ss_pred CC---------------------CcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccch
Confidence 44 4432221 124678888888888888888888889999999999999887422211
Q ss_pred hhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCC
Q 043523 384 LIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNAS 463 (650)
Q Consensus 384 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 463 (650)
......++|++|++++|.+.+.++...|..+++|++|++++|++++..+..+. ++|++|++++|+++. +|..+..++
T Consensus 397 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~-ip~~~~~l~ 473 (562)
T 3a79_B 397 LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQ 473 (562)
T ss_dssp HTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCC-CCTTTTSSC
T ss_pred hhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcc-cChhhcCCC
Confidence 12233459999999999999768888899999999999999999876665543 799999999999997 555556999
Q ss_pred CCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHh-HH
Q 043523 464 SLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLT-ME 514 (650)
Q Consensus 464 ~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-l~ 514 (650)
+|++|++++|++++.. ...+..+++|+.|++++|++.|.++..|+.+ |.
T Consensus 474 ~L~~L~L~~N~l~~l~--~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~ 523 (562)
T 3a79_B 474 ALQELNVASNQLKSVP--DGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWI 523 (562)
T ss_dssp CCSEEECCSSCCCCCC--TTSTTTCTTCCCEECCSCCBCCCHHHHHHHHHHH
T ss_pred CCCEEECCCCCCCCCC--HHHHhcCCCCCEEEecCCCcCCCcchHHHHHHHH
Confidence 9999999999998543 2248889999999999999999999888744 53
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5e-40 Score=359.29 Aligned_cols=429 Identities=21% Similarity=0.245 Sum_probs=261.4
Q ss_pred eecCCCCCcccccccccCCCCCCEEeC-CCCCCCCCCCC-----------------------------------------
Q 043523 2 LDLSECGLQGKFPEKILQVPTLETLDL-SENQLLQGSLP----------------------------------------- 39 (650)
Q Consensus 2 L~l~~~~i~~~~~~~~~~~~~L~~L~l-s~~~i~~~~~~----------------------------------------- 39 (650)
|+|+++++.|.+|.+++++++|++|+| ++|.+....+.
T Consensus 328 L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~ 407 (876)
T 4ecn_A 328 LSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDA 407 (876)
T ss_dssp EECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHH
T ss_pred EECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHH
Confidence 788888888888888889999999999 67654222000
Q ss_pred --------CC--CCCCcccEEEccC--CcCcCCCCCCCCCCCCCcEEEcCCCcccc-----------------CCCcCcc
Q 043523 40 --------NF--PKNSSLRNLILSG--TGFSGTLPDSIGNLENLTWVEVRRCNFTG-----------------PIPPSMA 90 (650)
Q Consensus 40 --------~~--~~l~~L~~L~L~~--~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-----------------~~~~~l~ 90 (650)
.+ .....++.+.+.. |.+++ +|..++++++|++|+|++|.+++ .+|..++
T Consensus 408 l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~ 486 (876)
T 4ecn_A 408 INRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS 486 (876)
T ss_dssp HHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred hhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhh
Confidence 00 1112233333333 55554 67778888888888888888876 2677766
Q ss_pred --CCCCCcEEEccCCccccc-CCccccCCCcCEEeCCCCc-Ccc-cCChHHHhccc-------cCCeEEccCCcCCCCcc
Q 043523 91 --NLTQLFHMDFSSNHFSGH-IPSLHKSRNLKYLDLSFNN-LSG-GISSTFWEQLV-------NLNLVLLSHNSLNGSIP 158 (650)
Q Consensus 91 --~l~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~~~-l~~-~~~~~~~~~l~-------~L~~L~l~~~~~~~~~~ 158 (650)
++++|++|++++|.+.+. ++.+..+++|++|++++|. +++ .++.. +..++ +|+.|++++|.+. ..|
T Consensus 487 f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip 564 (876)
T 4ecn_A 487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYNNLE-EFP 564 (876)
T ss_dssp GGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSSCCC-BCC
T ss_pred hccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHH-HHhhhhcccccCCccEEEeeCCcCC-ccC
Confidence 888888888888776544 3467777888888888887 665 45554 45554 7888888888777 556
Q ss_pred h--hccCCCCCCEEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCC-CcEEeCCCCccccccccCC
Q 043523 159 R--SLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRN-LYTLDLSSNKFSRLRLASS 235 (650)
Q Consensus 159 ~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~ 235 (650)
. .+..+++|+.|++++|.+. .++ ....+++|+.|++++|.+. .+|..+ ..+++ |+.|++++|.+..++.
T Consensus 565 ~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l-~~l~~~L~~L~Ls~N~L~~lp~--- 636 (876)
T 4ecn_A 565 ASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-EIPEDF-CAFTDQVEGLGFSHNKLKYIPN--- 636 (876)
T ss_dssp CHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-CCCTTS-CEECTTCCEEECCSSCCCSCCS---
T ss_pred ChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-cchHHH-hhccccCCEEECcCCCCCcCch---
Confidence 6 7777888888888887776 444 3344677777777777777 666554 66676 7777777777653321
Q ss_pred CCCCCCCCCCC--CCCcEEEccCCcCCCCCChhH---HhhcCcccceeeeccccccCCcCcc--cCCcccEEEeccCcCC
Q 043523 236 KPRVIPILKNQ--SQLSGLDISNNQIPGEIPNWI---WEVGNGNLNFLNLSHNLLVSLQEPY--SISSIRLLDLHSNQLR 308 (650)
Q Consensus 236 ~~~~l~~l~~~--~~L~~L~l~~~~i~~~~~~~~---~~~~~~~L~~L~l~~~~l~~l~~~~--~l~~L~~L~l~~~~l~ 308 (650)
.+... ++|+.|++++|.+.+.+|... .....++|+.|++++|.+..++... .+++|+.|++++|.+
T Consensus 637 ------~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L- 709 (876)
T 4ecn_A 637 ------IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM- 709 (876)
T ss_dssp ------CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCC-
T ss_pred ------hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcC-
Confidence 12222 347777777777765444221 1112234555666666555544332 245555555555544
Q ss_pred CCCCCCCCCccEEecCCCcCCCCchhhhhcc-------CCccEEEccCCccccccccccc--CCCcccEEECcCcccccc
Q 043523 309 GNIPHMSTNTSYVDYSNNHFTFIPADIGNFM-------SETEYFFAANNSLVGVIPESVC--KGIYFQVLDLSNNNLSGT 379 (650)
Q Consensus 309 ~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~-------~~l~~l~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~ 379 (650)
+.+|...+... ++|+.|++++|.+. .+|..+. .+++|+.|++++|.+.+
T Consensus 710 --------------------~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~- 767 (876)
T 4ecn_A 710 --------------------TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS- 767 (876)
T ss_dssp --------------------SCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-
T ss_pred --------------------CccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-
Confidence 44444433322 25666666666555 4455554 56666666666666654
Q ss_pred CChhhhhccccCccEEEccC------ccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCcccc
Q 043523 380 IPACLIAQSETTLGVLNLGR------NNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISD 453 (650)
Q Consensus 380 ~~~~~~~~~~~~L~~L~l~~------~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~ 453 (650)
+|..+... ++|+.|++++ |.+.+.+|.. |..+++|++|++++|++. .+|..+. ++|+.|+|++|++..
T Consensus 768 lp~~l~~L--~~L~~L~Ls~N~~ls~N~l~~~ip~~-l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 768 FPTQPLNS--SQLKAFGIRHQRDAEGNRILRQWPTG-ITTCPSLIQLQIGSNDIR-KVDEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp CCCGGGGC--TTCCEEECCCCBCTTCCBCCCCCCTT-GGGCSSCCEEECCSSCCC-BCCSCCC--SSSCEEECCSCTTCE
T ss_pred cchhhhcC--CCCCEEECCCCCCcccccccccChHH-HhcCCCCCEEECCCCCCC-ccCHhhc--CCCCEEECCCCCCCc
Confidence 44444332 2566666654 5555455544 566667777777777663 5555443 467777777777666
Q ss_pred ccchhhhcCCCCCeEEccCcccc
Q 043523 454 NFPCWLGNASSLQVLVLQSNNFS 476 (650)
Q Consensus 454 ~~~~~~~~~~~L~~L~l~~n~~~ 476 (650)
+.+..+.....+..+.+.+|+..
T Consensus 842 i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 842 IDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp EECGGGHHHHHTTCCEEECCTTS
T ss_pred cChHHccccccchheeecCCCcc
Confidence 55555555445555555555443
No 23
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.1e-41 Score=362.33 Aligned_cols=183 Identities=20% Similarity=0.189 Sum_probs=112.4
Q ss_pred cccEEEeccCcCCCCCCCCC----------CCccEEecCCCcCCCCchhhhhccCCccEEEccCCccccccccccc-CCC
Q 043523 296 SIRLLDLHSNQLRGNIPHMS----------TNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVC-KGI 364 (650)
Q Consensus 296 ~L~~L~l~~~~l~~~~~~~~----------~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~-~~~ 364 (650)
+|+.+++++|.+.+..+..+ .+|++|++++|+++.++..++..+++|+.+++++|.+. .+|.... ...
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~ 481 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN 481 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETT
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccc
Confidence 55666666666555443322 35666666666666666666655666666666666655 2332221 111
Q ss_pred cccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCccc-CCCCCccEEEcCCCccccccchhcccCCCCCE
Q 043523 365 YFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIF-PRNCGLQILDLGGNQLQGVVPKSLANCNMLQV 443 (650)
Q Consensus 365 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~ 443 (650)
.. ...+++|++|++++|.+. .++...+ ..+++|++|++++|++++ +|..+..+++|++
T Consensus 482 -----------------~~--~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~ 540 (636)
T 4eco_A 482 -----------------EN--FKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKG 540 (636)
T ss_dssp -----------------EE--CTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCE
T ss_pred -----------------cc--ccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCE
Confidence 00 000115666666666666 4554433 367777777777777775 6667777777777
Q ss_pred EeC------CCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCccccccc
Q 043523 444 LDL------KNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRL 505 (650)
Q Consensus 444 L~L------s~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 505 (650)
|+| ++|++.+..|..+..+++|++|++++|++... +..+. ++|++|++++|++.+..
T Consensus 541 L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~i---p~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKV---NEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp EECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBC---CSCCC--TTCCEEECCSCTTCEEE
T ss_pred EECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCcc---CHhHh--CcCCEEECcCCCCcccc
Confidence 777 45666667777788888888888888888432 33333 78888888888776544
No 24
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.6e-39 Score=352.55 Aligned_cols=411 Identities=21% Similarity=0.271 Sum_probs=272.1
Q ss_pred CcccEEEccCCcCcCCCCCCCCCCCCCcEEEc-CCCccccCCCcC-----------------------------------
Q 043523 45 SSLRNLILSGTGFSGTLPDSIGNLENLTWVEV-RRCNFTGPIPPS----------------------------------- 88 (650)
Q Consensus 45 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L-~~~~l~~~~~~~----------------------------------- 88 (650)
.+++.|+|+++++.+.+|..++++++|++|+| ++|.+.+..|..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 46777777777777777777777777777777 666554331111
Q ss_pred ----------------ccCCCCCcEEEcc--CCcccccCCccccCCCcCEEeCCCCcCcc-----------------cCC
Q 043523 89 ----------------MANLTQLFHMDFS--SNHFSGHIPSLHKSRNLKYLDLSFNNLSG-----------------GIS 133 (650)
Q Consensus 89 ----------------l~~l~~L~~L~l~--~~~i~~~~~~~~~~~~L~~L~l~~~~l~~-----------------~~~ 133 (650)
......++.+.+. .|.++++++.+..+++|++|++++|.+++ .++
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP 482 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence 0111223333333 36676677778888899999999998886 266
Q ss_pred hHH-HhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCc-CCC-CCchh------hhcCCCCccEEEccCCcCCC
Q 043523 134 STF-WEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQ-FEN-QLPEI------SNVSSSVLFDLDLSGNRLEG 204 (650)
Q Consensus 134 ~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~------~~~~~~~L~~L~l~~~~l~~ 204 (650)
..+ |.++++|+.|++++|.+....|..+..+++|+.|++++|. +.. .+|.. ....+++|+.|++++|.+.
T Consensus 483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~- 561 (876)
T 4ecn_A 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE- 561 (876)
T ss_dssp SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-
T ss_pred hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-
Confidence 652 3389999999999998888888899999999999999997 664 34432 1234568999999999998
Q ss_pred CCch-hHhhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccCCcCCCCCChhHHhhcCcc-cceeeecc
Q 043523 205 PVPI-SIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGN-LNFLNLSH 282 (650)
Q Consensus 205 ~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~-L~~L~l~~ 282 (650)
.+|. ..+..+++|+.|++++|.+..++ .+..+++|++|++++|.+. .+|.++... ++ |+.|++++
T Consensus 562 ~ip~~~~l~~L~~L~~L~Ls~N~l~~lp----------~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l--~~~L~~L~Ls~ 628 (876)
T 4ecn_A 562 EFPASASLQKMVKLGLLDCVHNKVRHLE----------AFGTNVKLTDLKLDYNQIE-EIPEDFCAF--TDQVEGLGFSH 628 (876)
T ss_dssp BCCCHHHHTTCTTCCEEECTTSCCCBCC----------CCCTTSEESEEECCSSCCS-CCCTTSCEE--CTTCCEEECCS
T ss_pred ccCChhhhhcCCCCCEEECCCCCcccch----------hhcCCCcceEEECcCCccc-cchHHHhhc--cccCCEEECcC
Confidence 7886 34489999999999999886332 3778899999999999998 788775443 45 99999999
Q ss_pred ccccCCcCccc---CCcccEEEeccCcCCCCCCCC--------CCCccEEecCCCcCCCCchhhhhccCCccEEEccCCc
Q 043523 283 NLLVSLQEPYS---ISSIRLLDLHSNQLRGNIPHM--------STNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNS 351 (650)
Q Consensus 283 ~~l~~l~~~~~---l~~L~~L~l~~~~l~~~~~~~--------~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~ 351 (650)
|.+..+|.... .++|+.|++++|.+.+..+.. .++|+.|++++|+++.+|..++..+++|+.|++++|.
T Consensus 629 N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~ 708 (876)
T 4ecn_A 629 NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708 (876)
T ss_dssp SCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC
T ss_pred CCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc
Confidence 99988876654 245999999999988755432 2478888888888888888777667788888888877
Q ss_pred ccccccccccCC--------CcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcC
Q 043523 352 LVGVIPESVCKG--------IYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLG 423 (650)
Q Consensus 352 ~~~~~~~~l~~~--------~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls 423 (650)
+. .+|..+... ++|+.|++++|.+. .+|..+....+++|+.|++++|.+.+ ++.. +..+++|+.|+++
T Consensus 709 L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~-l~~L~~L~~L~Ls 784 (876)
T 4ecn_A 709 MT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQ-PLNSSQLKAFGIR 784 (876)
T ss_dssp CS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCG-GGGCTTCCEEECC
T ss_pred CC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchh-hhcCCCCCEEECC
Confidence 77 444433322 25666666666655 44444331122355555555555553 3333 4455555555554
Q ss_pred C------CccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccc
Q 043523 424 G------NQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFS 476 (650)
Q Consensus 424 ~------~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 476 (650)
+ |++.+..|..+..+++|++|+|++|++.. +|..+. ++|+.|+|++|++.
T Consensus 785 ~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~-Ip~~l~--~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 785 HQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKLT--PQLYILDIADNPNI 840 (876)
T ss_dssp CCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCB-CCSCCC--SSSCEEECCSCTTC
T ss_pred CCCCcccccccccChHHHhcCCCCCEEECCCCCCCc-cCHhhc--CCCCEEECCCCCCC
Confidence 3 33444444444445555555555554432 232222 34444455444444
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.3e-36 Score=312.38 Aligned_cols=405 Identities=19% Similarity=0.170 Sum_probs=266.7
Q ss_pred CCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCcccc-CCCcCccCCCCCcEEEcc
Q 043523 23 LETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTG-PIPPSMANLTQLFHMDFS 101 (650)
Q Consensus 23 L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~l~ 101 (650)
-+.++.+++.++.... +. ++|++|+|++|.+.+..|..|+++++|++|++++|.+.+ ..+.+|.++++|++|+++
T Consensus 12 ~~~~~c~~~~l~~lp~--l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 12 GYNAICINRGLHQVPE--LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TTEEECCSSCCSSCCC--CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred ccccCcCCCCcccCCC--CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 3467777777744432 33 689999999998887778889999999999999988863 446678889999999999
Q ss_pred CCcccccC-CccccCCCcCEEeCCCCcCcccCC-hHHHhccccCCeEEccCCcCCCCcchh-ccCCCCCCEEEccCCcCC
Q 043523 102 SNHFSGHI-PSLHKSRNLKYLDLSFNNLSGGIS-STFWEQLVNLNLVLLSHNSLNGSIPRS-LFLLPNLETLWLSNNQFE 178 (650)
Q Consensus 102 ~~~i~~~~-~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~ 178 (650)
+|++.... ..+..+++|++|++++|.+++..+ ...+..+++|++|++++|.+....+.. +..+++|++|++++|.+.
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 98887764 467778888888888888764222 122567777888888888777665554 667777777777777766
Q ss_pred CCCchhh-hcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccCC
Q 043523 179 NQLPEIS-NVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNN 257 (650)
Q Consensus 179 ~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~ 257 (650)
...+... .... ++|+.+++++|.+..+..........+.+..+++|++|++++|
T Consensus 168 ~~~~~~l~~l~~-------------------------~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 222 (455)
T 3v47_A 168 SICEEDLLNFQG-------------------------KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN 222 (455)
T ss_dssp CCCTTTSGGGTT-------------------------CEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTS
T ss_pred ccChhhhhcccc-------------------------ccccccccccCcccccchhhccccccccccccceeeeEecCCC
Confidence 4333211 1112 3444444444444332211110011111344567888888888
Q ss_pred cCCCCCChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhh
Q 043523 258 QIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGN 337 (650)
Q Consensus 258 ~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~ 337 (650)
.+.+..|.++..... .++++.+++++|...+.... .+.+.......+.
T Consensus 223 ~l~~~~~~~~~~~~~---------------------~~~L~~L~l~~~~~~~~~~~-----------~~~~~~~~~~~~~ 270 (455)
T 3v47_A 223 GFKESMAKRFFDAIA---------------------GTKIQSLILSNSYNMGSSFG-----------HTNFKDPDNFTFK 270 (455)
T ss_dssp CCCHHHHHHHHHHTT---------------------TCCEEEEECTTCTTTSCCTT-----------CCSSCCCCTTTTG
T ss_pred cccccchhhhhcccc---------------------ccceeeEeeccccccccccc-----------hhhhccCcccccc
Confidence 887666666654311 13344444444433221110 0011100000000
Q ss_pred ccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCc
Q 043523 338 FMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGL 417 (650)
Q Consensus 338 ~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 417 (650)
-...++|+.|++++|.+.+..+..+.... +|++|++++|.+. .++...|..+++|
T Consensus 271 ----------------------~~~~~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~-~~~~~~~~~l~~L 325 (455)
T 3v47_A 271 ----------------------GLEASGVKTCDLSKSKIFALLKSVFSHFT--DLEQLTLAQNEIN-KIDDNAFWGLTHL 325 (455)
T ss_dssp ----------------------GGTTSCCCEEECCSSCCCEECTTTTTTCT--TCCEEECTTSCCC-EECTTTTTTCTTC
T ss_pred ----------------------cccccCceEEEecCccccccchhhcccCC--CCCEEECCCCccc-ccChhHhcCcccC
Confidence 00123455555555555544444443332 6666666666666 3333348888999
Q ss_pred cEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCC
Q 043523 418 QILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLA 497 (650)
Q Consensus 418 ~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~ 497 (650)
++|++++|.+++..+..+..+++|++|+|++|++.+..+..+..+++|++|++++|++++.. ...+..+++|++|+++
T Consensus 326 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~ 403 (455)
T 3v47_A 326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP--DGIFDRLTSLQKIWLH 403 (455)
T ss_dssp CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECC
T ss_pred CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCC--HhHhccCCcccEEEcc
Confidence 99999999998888889999999999999999999988889999999999999999998654 4567889999999999
Q ss_pred CcccccccC-hHHHHhHHh
Q 043523 498 SNKFSGRLS-QKWLLTMEE 515 (650)
Q Consensus 498 ~n~~~~~~~-~~~~~~l~~ 515 (650)
+|++.+.++ ..|+.+|..
T Consensus 404 ~N~l~~~~~~~~~l~~~l~ 422 (455)
T 3v47_A 404 TNPWDCSCPRIDYLSRWLN 422 (455)
T ss_dssp SSCBCCCTTTTHHHHHHHH
T ss_pred CCCcccCCCcchHHHHHHH
Confidence 999999998 666665543
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.4e-35 Score=309.26 Aligned_cols=102 Identities=17% Similarity=0.259 Sum_probs=58.2
Q ss_pred cEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEccCCcccc-cC-CccccCCCcCEEeCCC
Q 043523 48 RNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSG-HI-PSLHKSRNLKYLDLSF 125 (650)
Q Consensus 48 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~i~~-~~-~~~~~~~~L~~L~l~~ 125 (650)
+.++.++++++ .+|. + .++|++|++++|.+++..|..|.++++|++|++++|.+.. .. ..+..+++|++|++++
T Consensus 13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 45666666666 4554 2 2677777777777776667777777777777777776642 21 2344555555555555
Q ss_pred CcCcccCChHHHhccccCCeEEccCCcCC
Q 043523 126 NNLSGGISSTFWEQLVNLNLVLLSHNSLN 154 (650)
Q Consensus 126 ~~l~~~~~~~~~~~l~~L~~L~l~~~~~~ 154 (650)
|.+++..+.. ++++++|++|++++|.+.
T Consensus 89 n~l~~~~~~~-~~~l~~L~~L~L~~n~l~ 116 (455)
T 3v47_A 89 NQFLQLETGA-FNGLANLEVLTLTQCNLD 116 (455)
T ss_dssp CTTCEECTTT-TTTCTTCCEEECTTSCCB
T ss_pred CccCccChhh-ccCcccCCEEeCCCCCCC
Confidence 5554332322 344444444444444443
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.7e-35 Score=304.85 Aligned_cols=406 Identities=23% Similarity=0.256 Sum_probs=168.0
Q ss_pred CCCCcEEEccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEE
Q 043523 92 LTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLW 171 (650)
Q Consensus 92 l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 171 (650)
.++|++|++++|.+..+++.+.++++|++|++++|.+.+.++.. ++.+++|+.+++.+|.. .++++|+
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~l~l~~c~~-----------~~l~~L~ 77 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPG-NGEQREMAVSRLRDCLD-----------RQAHELE 77 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTT-SCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcc-cccchhcchhhhhhhhc-----------cCCCEEE
Confidence 46677777777777656666777777777777777666555555 45555555555544421 3456666
Q ss_pred ccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcE
Q 043523 172 LSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSG 251 (650)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~ 251 (650)
+++|.+.. ++. ..++|+.|++++|.+.+ +|. .+++|+.|++++|.++.+. .+ .++|++
T Consensus 78 l~~~~l~~-lp~----~~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~l~----------~~--~~~L~~ 135 (454)
T 1jl5_A 78 LNNLGLSS-LPE----LPPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKALS----------DL--PPLLEY 135 (454)
T ss_dssp CTTSCCSC-CCS----CCTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSCCC----------SC--CTTCCE
T ss_pred ecCCcccc-CCC----CcCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCccc----------CC--CCCCCE
Confidence 66666552 221 12456666666666553 442 2355555666555544211 00 134445
Q ss_pred EEccCCcCCCCCChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCC
Q 043523 252 LDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFI 331 (650)
Q Consensus 252 L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~ 331 (650)
|++++|. ++.++....+++|+++++++|++.+ .+....++++|++++|+++.+
T Consensus 136 L~L~~n~--------------------------l~~lp~~~~l~~L~~L~l~~N~l~~-lp~~~~~L~~L~L~~n~l~~l 188 (454)
T 1jl5_A 136 LGVSNNQ--------------------------LEKLPELQNSSFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLEEL 188 (454)
T ss_dssp EECCSSC--------------------------CSSCCCCTTCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSC
T ss_pred EECcCCC--------------------------CCCCcccCCCCCCCEEECCCCcCcc-cCCCcccccEEECcCCcCCcC
Confidence 5555444 4444433344555555555555443 223334555555555555544
Q ss_pred chhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCccc
Q 043523 332 PADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIF 411 (650)
Q Consensus 332 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 411 (650)
+. +..+++|+.+++++|.+.+ +|.. ..+|+.|++++|.+. .+|. +. ..++|++|++++|++. .++..
T Consensus 189 ~~--~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~--~l~~L~~L~l~~N~l~-~l~~~-- 255 (454)
T 1jl5_A 189 PE--LQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQ--NLPFLTTIYADNNLLK-TLPDL-- 255 (454)
T ss_dssp CC--CTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CT--TCTTCCEEECCSSCCS-SCCSC--
T ss_pred cc--ccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cC--CCCCCCEEECCCCcCC-ccccc--
Confidence 41 2235555555555555443 1111 134555555555554 3332 22 2235555555555554 22221
Q ss_pred CCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCC-CC
Q 043523 412 PRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSW-PL 490 (650)
Q Consensus 412 ~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-~~ 490 (650)
.++|++|++++|++++ .|.. .++|++|++++|++.++ +. -.++|++|++++|++++.. .+ ++
T Consensus 256 --~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~i~-------~~~~~ 318 (454)
T 1jl5_A 256 --PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRSLC-------DLPPS 318 (454)
T ss_dssp --CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSEEC-------CCCTT
T ss_pred --ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCccc-------CCcCc
Confidence 2455555555555553 2221 24555555555555541 11 1245555555555554321 11 35
Q ss_pred CCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCC
Q 043523 491 LQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSN 570 (650)
Q Consensus 491 L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~ 570 (650)
|++|++++|.+++ .+ ..++.|++|++++|
T Consensus 319 L~~L~Ls~N~l~~-lp--------------------------------------------------~~~~~L~~L~L~~N 347 (454)
T 1jl5_A 319 LEELNVSNNKLIE-LP--------------------------------------------------ALPPRLERLIASFN 347 (454)
T ss_dssp CCEEECCSSCCSC-CC--------------------------------------------------CCCTTCCEEECCSS
T ss_pred CCEEECCCCcccc-cc--------------------------------------------------ccCCcCCEEECCCC
Confidence 5555555555431 00 01345566666666
Q ss_pred ccccCCCccccCCcCCCEEeCccccCcc--cCCcCccCC-------------CCCCeeeCCCCcCCc--cCCccccCCCC
Q 043523 571 NFEGPIPEEMGRFKSLYALNMSHNALTG--SIPSSFGNL-------------KQIESLDLSMNNLSG--KIPAQLASLNF 633 (650)
Q Consensus 571 ~~~~~~~~~~~~l~~L~~L~ls~n~i~~--~~~~~~~~l-------------~~L~~L~l~~n~i~~--~~~~~l~~l~~ 633 (650)
.+..+.. .+++|++|++++|++++ .+|.+++.+ ++|++|++++|.+++ .+| ++
T Consensus 348 ~l~~lp~----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP------~s 417 (454)
T 1jl5_A 348 HLAEVPE----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP------ES 417 (454)
T ss_dssp CCSCCCC----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------------------
T ss_pred ccccccc----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch------hh
Confidence 6553322 24566666666666665 455555554 667777777777765 233 34
Q ss_pred CCeEEccCCcCcccCC
Q 043523 634 LSVLNLSYNNLVGKIP 649 (650)
Q Consensus 634 L~~L~l~~n~~~~~~p 649 (650)
++.|.+++|.+.+.+|
T Consensus 418 l~~L~~~~~~~~~~~~ 433 (454)
T 1jl5_A 418 VEDLRMNSERVVDPYE 433 (454)
T ss_dssp ----------------
T ss_pred HhheeCcCcccCCccc
Confidence 5556667766665544
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.3e-34 Score=298.29 Aligned_cols=399 Identities=19% Similarity=0.226 Sum_probs=188.1
Q ss_pred cccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCC-------------cEEEcCCCc
Q 043523 14 PEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENL-------------TWVEVRRCN 80 (650)
Q Consensus 14 ~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L-------------~~L~L~~~~ 80 (650)
|+.+ +.++|++|++++|.+ ...++.|.++++|++|++++|.+.+.+|..++++.+| ++|++++|+
T Consensus 5 p~~~-~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~ 82 (454)
T 1jl5_A 5 PRNV-SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG 82 (454)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC
T ss_pred cccc-ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc
Confidence 4444 358899999999988 5556678889999999999998888888888888765 788888887
Q ss_pred cccCCCcCccCCCCCcEEEccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchh
Q 043523 81 FTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRS 160 (650)
Q Consensus 81 l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 160 (650)
+++ +|.. .++|++|++++|.++++++. .++|++|++++|.+++ ++. ..++|++|++++|.+.. .+ +
T Consensus 83 l~~-lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~-l~~----~~~~L~~L~L~~n~l~~-lp-~ 148 (454)
T 1jl5_A 83 LSS-LPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKA-LSD----LPPLLEYLGVSNNQLEK-LP-E 148 (454)
T ss_dssp CSC-CCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC-CCS----CCTTCCEEECCSSCCSS-CC-C
T ss_pred ccc-CCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCc-ccC----CCCCCCEEECcCCCCCC-Cc-c
Confidence 773 4432 36778888888877764432 3678888888877763 221 12577777777777774 34 4
Q ss_pred ccCCCCCCEEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCC
Q 043523 161 LFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVI 240 (650)
Q Consensus 161 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l 240 (650)
+..+++|++|++++|.+.. ++.. ..+|+.|++++|.+.+ +| . +..+++|+.|++++|.++.+.
T Consensus 149 ~~~l~~L~~L~l~~N~l~~-lp~~----~~~L~~L~L~~n~l~~-l~-~-~~~l~~L~~L~l~~N~l~~l~--------- 211 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKK-LPDL----PPSLEFIAAGNNQLEE-LP-E-LQNLPFLTAIYADNNSLKKLP--------- 211 (454)
T ss_dssp CTTCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSS-CC-C-CTTCTTCCEEECCSSCCSSCC---------
T ss_pred cCCCCCCCEEECCCCcCcc-cCCC----cccccEEECcCCcCCc-Cc-c-ccCCCCCCEEECCCCcCCcCC---------
Confidence 7777777777777777663 2221 2356666666666663 44 2 356666666666666554221
Q ss_pred CCCCCCCCCcEEEccCCcCCCCCChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccE
Q 043523 241 PILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSY 320 (650)
Q Consensus 241 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~ 320 (650)
.. .++|++|++++|.+. .++....+++|+.+++++|++.+ .+..++++++
T Consensus 212 -~~--~~~L~~L~l~~n~l~--------------------------~lp~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~ 261 (454)
T 1jl5_A 212 -DL--PLSLESIVAGNNILE--------------------------ELPELQNLPFLTTIYADNNLLKT-LPDLPPSLEA 261 (454)
T ss_dssp -CC--CTTCCEEECCSSCCS--------------------------SCCCCTTCTTCCEEECCSSCCSS-CCSCCTTCCE
T ss_pred -CC--cCcccEEECcCCcCC--------------------------cccccCCCCCCCEEECCCCcCCc-ccccccccCE
Confidence 01 134555555555554 33333334444444444444433 1222344455
Q ss_pred EecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCc
Q 043523 321 VDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRN 400 (650)
Q Consensus 321 L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 400 (650)
+++++|+++.++.. +++++.+++++|.+.+... ..++|+.|++++|.+.+ ++. ..++|++|++++|
T Consensus 262 L~l~~N~l~~l~~~----~~~L~~L~ls~N~l~~l~~----~~~~L~~L~l~~N~l~~-i~~-----~~~~L~~L~Ls~N 327 (454)
T 1jl5_A 262 LNVRDNYLTDLPEL----PQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRS-LCD-----LPPSLEELNVSNN 327 (454)
T ss_dssp EECCSSCCSCCCCC----CTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSE-ECC-----CCTTCCEEECCSS
T ss_pred EECCCCcccccCcc----cCcCCEEECcCCccCcccC----cCCcCCEEECcCCcCCc-ccC-----CcCcCCEEECCCC
Confidence 55555554444332 2455555555555443110 01355555555555542 111 0125666666666
Q ss_pred cCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCcccc--ccchhhhcC-------------CCC
Q 043523 401 NLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISD--NFPCWLGNA-------------SSL 465 (650)
Q Consensus 401 ~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~~-------------~~L 465 (650)
++.+ ++.. +++|++|++++|++++ +|. .+++|++|++++|++.+ ..|..+..+ ++|
T Consensus 328 ~l~~-lp~~----~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L 398 (454)
T 1jl5_A 328 KLIE-LPAL----PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNL 398 (454)
T ss_dssp CCSC-CCCC----CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------
T ss_pred cccc-cccc----CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcC
Confidence 5552 3322 3556666666666652 333 34566666666666655 334444333 667
Q ss_pred CeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccc
Q 043523 466 QVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGR 504 (650)
Q Consensus 466 ~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 504 (650)
++|++++|++.+...++ ++++.|.+++|.+.+.
T Consensus 399 ~~L~ls~N~l~~~~~iP------~sl~~L~~~~~~~~~~ 431 (454)
T 1jl5_A 399 KQLHVETNPLREFPDIP------ESVEDLRMNSERVVDP 431 (454)
T ss_dssp ---------------------------------------
T ss_pred CEEECCCCcCCccccch------hhHhheeCcCcccCCc
Confidence 77777777765422112 3456666666665543
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.3e-32 Score=283.53 Aligned_cols=345 Identities=24% Similarity=0.289 Sum_probs=187.3
Q ss_pred CCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccCCcCCCCCChhHH
Q 043523 189 SSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIW 268 (650)
Q Consensus 189 ~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~i~~~~~~~~~ 268 (650)
+..++.|++.++.+. .+|. +..+++|+.|++++|.++.+. .+..+++|++|++++|.+.+..+ +.
T Consensus 45 l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~----------~~~~l~~L~~L~l~~n~l~~~~~--~~ 109 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDIT----------PLKNLTKLVDILMNNNQIADITP--LA 109 (466)
T ss_dssp HHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCG----------GGTTCTTCCEEECCSSCCCCCGG--GT
T ss_pred hccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCch----------hhhccccCCEEECCCCccccChh--hc
Confidence 356777888777776 4543 366778888888877766321 15667777888887777764332 32
Q ss_pred hhcCcccceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEcc
Q 043523 269 EVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAA 348 (650)
Q Consensus 269 ~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~ 348 (650)
..++|++|++++|.++.++....+++|++|++++|.+.+. +. +..+++|+.++++
T Consensus 110 --~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~~--~~~l~~L~~L~l~ 164 (466)
T 1o6v_A 110 --NLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI---------------------SA--LSGLTSLQQLSFG 164 (466)
T ss_dssp --TCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCC---------------------GG--GTTCTTCSEEEEE
T ss_pred --CCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCCC---------------------hh--hccCCcccEeecC
Confidence 2345777777777777776655667777777776665532 21 1224444444443
Q ss_pred CCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccc
Q 043523 349 NNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQ 428 (650)
Q Consensus 349 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~ 428 (650)
+ .+.+. ..+..+++|+.|++++|.+.+. + .+. ..++|++|++++|.+.+..+ +..+++|++|++++|+++
T Consensus 165 ~-~~~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~--~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~ 234 (466)
T 1o6v_A 165 N-QVTDL--KPLANLTTLERLDISSNKVSDI-S-VLA--KLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLK 234 (466)
T ss_dssp E-SCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GGG--GCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCC
T ss_pred C-cccCc--hhhccCCCCCEEECcCCcCCCC-h-hhc--cCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcc
Confidence 2 22211 1244555555555555554421 1 111 12255555555555543222 344555555555555554
Q ss_pred cccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChH
Q 043523 429 GVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQK 508 (650)
Q Consensus 429 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 508 (650)
+. ..+..+++|++|++++|++.+..+ +..+++|++|++++|.+.... .+..+++|++|++++|.+.+..+
T Consensus 235 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~L~~n~l~~~~~-- 304 (466)
T 1o6v_A 235 DI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS----PLAGLTALTNLELNENQLEDISP-- 304 (466)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG----GGTTCTTCSEEECCSSCCSCCGG--
T ss_pred cc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCccc----cccCCCccCeEEcCCCcccCchh--
Confidence 32 234555555555555555555332 455555555555555554322 14455555556655555432111
Q ss_pred HHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCE
Q 043523 509 WLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYA 588 (650)
Q Consensus 509 ~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~ 588 (650)
+..+++|+.|++++|.+.+..+ +..+++|++
T Consensus 305 -----------------------------------------------~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 335 (466)
T 1o6v_A 305 -----------------------------------------------ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 335 (466)
T ss_dssp -----------------------------------------------GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCE
T ss_pred -----------------------------------------------hcCCCCCCEEECcCCcCCCchh--hccCccCCE
Confidence 1234555556666665554433 455566666
Q ss_pred EeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCcCcc
Q 043523 589 LNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVG 646 (650)
Q Consensus 589 L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~ 646 (650)
|++++|++++. ..++.+++|++|++++|++++..| +..+++|+.|++++|++++
T Consensus 336 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 336 LFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred eECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 66666655533 345556666666666666655544 5556666666666665554
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6e-32 Score=281.56 Aligned_cols=190 Identities=24% Similarity=0.291 Sum_probs=113.0
Q ss_pred CCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEE
Q 043523 19 QVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHM 98 (650)
Q Consensus 19 ~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L 98 (650)
++++++.|+++++.+.. .+.+..+++|++|++++|.+.+. +. +..+++|++|++++|.+.+..+ +.++++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~~--l~~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCCC--CTTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCCCCcc--CcchhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 45677778887777643 34566777788888887777743 33 7777777777777777774333 7777777777
Q ss_pred EccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCcCC
Q 043523 99 DFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFE 178 (650)
Q Consensus 99 ~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 178 (650)
++++|.+...++ +..+++|++|++++|.+.+ ++ . +..+++|+.|++. +.+... ..+..+++|++|++++|.+.
T Consensus 118 ~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~-~-~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 118 TLFNNQITDIDP-LKNLTNLNRLELSSNTISD-IS-A-LSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVS 190 (466)
T ss_dssp ECCSSCCCCCGG-GTTCTTCSEEEEEEEEECC-CG-G-GTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCChH-HcCCCCCCEEECCCCccCC-Ch-h-hccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcCC
Confidence 777777765543 6667777777777777653 22 2 5667777777765 333322 23666666666666666554
Q ss_pred CCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCcc
Q 043523 179 NQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKF 227 (650)
Q Consensus 179 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 227 (650)
.. +. ...+++|+.|++++|.+.+..+ +..+++|+.|++++|.+
T Consensus 191 ~~-~~--l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l 233 (466)
T 1o6v_A 191 DI-SV--LAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQL 233 (466)
T ss_dssp CC-GG--GGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCC
T ss_pred CC-hh--hccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCc
Confidence 21 11 1223444444444444442222 23344444444444433
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.3e-32 Score=281.78 Aligned_cols=365 Identities=21% Similarity=0.214 Sum_probs=224.1
Q ss_pred CcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcC
Q 043523 9 LQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPS 88 (650)
Q Consensus 9 i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~ 88 (650)
..+..+..++++++|++|++++|.++.. +.|..+++|++|++++|.+++ ++ ++.+++|++|++++|.+++. +
T Consensus 30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~-- 101 (457)
T 3bz5_A 30 MQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D-- 101 (457)
T ss_dssp CCTTSEEEHHHHTTCCEEECCSSCCCCC--TTGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--
T ss_pred cCcccccChhHcCCCCEEEccCCCcccC--hhhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--
Confidence 3444556677888888888888887543 467788888888888888874 33 77888888888888888753 3
Q ss_pred ccCCCCCcEEEccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCC
Q 043523 89 MANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLE 168 (650)
Q Consensus 89 l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 168 (650)
++++++|++|++++|++...+ +..+++|++|++++|.+++ ++ ++.+++|++|++++|...... .+..+++|+
T Consensus 102 ~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~ 173 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLT 173 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence 778888888888888877642 6677777888887777764 22 456666777777666332222 344555555
Q ss_pred EEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCC
Q 043523 169 TLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQ 248 (650)
Q Consensus 169 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~ 248 (650)
.|++++|.+.. +| +..+++|+.|++++|.++.++ +..+++
T Consensus 174 ~L~ls~n~l~~--------------------------l~---l~~l~~L~~L~l~~N~l~~~~-----------l~~l~~ 213 (457)
T 3bz5_A 174 TLDCSFNKITE--------------------------LD---VSQNKLLNRLNCDTNNITKLD-----------LNQNIQ 213 (457)
T ss_dssp EEECCSSCCCC--------------------------CC---CTTCTTCCEEECCSSCCSCCC-----------CTTCTT
T ss_pred EEECCCCccce--------------------------ec---cccCCCCCEEECcCCcCCeec-----------cccCCC
Confidence 55555555442 22 244455555555555544221 334445
Q ss_pred CcEEEccCCcCCCCCChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcC
Q 043523 249 LSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHF 328 (650)
Q Consensus 249 L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i 328 (650)
|++|++++|.+.+ +| +. ..++|+.|++++|.++.++ ...+++|+.++++.+
T Consensus 214 L~~L~Ls~N~l~~-ip--~~--~l~~L~~L~l~~N~l~~~~-~~~l~~L~~L~l~~n----------------------- 264 (457)
T 3bz5_A 214 LTFLDCSSNKLTE-ID--VT--PLTQLTYFDCSVNPLTELD-VSTLSKLTTLHCIQT----------------------- 264 (457)
T ss_dssp CSEEECCSSCCSC-CC--CT--TCTTCSEEECCSSCCSCCC-CTTCTTCCEEECTTC-----------------------
T ss_pred CCEEECcCCcccc-cC--cc--ccCCCCEEEeeCCcCCCcC-HHHCCCCCEEeccCC-----------------------
Confidence 5555555555442 22 11 1122333333333333332 222344444443332
Q ss_pred CCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCC
Q 043523 329 TFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSD 408 (650)
Q Consensus 329 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 408 (650)
+++.+++++|...+.+| +..+++|+.|++++|...+.+|.. ..+|+.|++
T Consensus 265 ------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~-----~~~L~~L~l----------- 314 (457)
T 3bz5_A 265 ------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQ-----AAGITELDL----------- 314 (457)
T ss_dssp ------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECT-----TCCCSCCCC-----------
T ss_pred ------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccC-----CCcceEech-----------
Confidence 22333444444444443 345677777777777765544421 114444443
Q ss_pred cccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCC
Q 043523 409 TIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSW 488 (650)
Q Consensus 409 ~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 488 (650)
..+++|++|++++|++++. .+..+++|+.|++++|++.+ ++.|..|.+++|.+.+. ..+
T Consensus 315 ---~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-------~~~ 373 (457)
T 3bz5_A 315 ---SQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-------GQT 373 (457)
T ss_dssp ---TTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-------EEE
T ss_pred ---hhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-------cee
Confidence 3446788889998888864 27888899999999998876 35677778888887643 244
Q ss_pred CCCCeeeCCCcccccccChHH
Q 043523 489 PLLQIVDLASNKFSGRLSQKW 509 (650)
Q Consensus 489 ~~L~~L~l~~n~~~~~~~~~~ 509 (650)
..|..+++++|.+++.+|..+
T Consensus 374 ~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 374 ITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp EECCCBCCBTTBEEEECCTTC
T ss_pred eecCccccccCcEEEEcChhH
Confidence 567888999999888877654
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=7.2e-32 Score=278.11 Aligned_cols=320 Identities=23% Similarity=0.199 Sum_probs=175.0
Q ss_pred CCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhc
Q 043523 60 TLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQ 139 (650)
Q Consensus 60 ~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 139 (650)
..+..++++++|++|++++|.+++ .| .+.++++|++|++++|.+++.+ +..+++|++|++++|.+++. + +++
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~-~---~~~ 104 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNL-D---VTP 104 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-C---CTT
T ss_pred ccccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCcee-e---cCC
Confidence 334455666777777777776663 34 5666677777777776666542 55556666666666665532 1 445
Q ss_pred cccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcE
Q 043523 140 LVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYT 219 (650)
Q Consensus 140 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~ 219 (650)
+++|++|++++|.+... + +..+++|++| ++++|.+.+ ++ +..+++|+.
T Consensus 105 l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L-------------------------~l~~N~l~~-l~---l~~l~~L~~ 152 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKL-D--VSQNPLLTYL-------------------------NCARNTLTE-ID---VSHNTQLTE 152 (457)
T ss_dssp CTTCCEEECCSSCCSCC-C--CTTCTTCCEE-------------------------ECTTSCCSC-CC---CTTCTTCCE
T ss_pred CCcCCEEECCCCcCCee-c--CCCCCcCCEE-------------------------ECCCCccce-ec---cccCCcCCE
Confidence 55555555555555432 1 3344444444 444444442 22 256677888
Q ss_pred EeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccCCcCCCCCChhHHhhcCcccceeeeccccccCCcCcccCCcccE
Q 043523 220 LDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRL 299 (650)
Q Consensus 220 L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~ 299 (650)
|++++|... ..+ .+..+++|++|++++|.+.+ +| +. ..++|+.|++++|.++.+
T Consensus 153 L~l~~n~~~---------~~~-~~~~l~~L~~L~ls~n~l~~-l~--l~--~l~~L~~L~l~~N~l~~~----------- 206 (457)
T 3bz5_A 153 LDCHLNKKI---------TKL-DVTPQTQLTTLDCSFNKITE-LD--VS--QNKLLNRLNCDTNNITKL----------- 206 (457)
T ss_dssp EECTTCSCC---------CCC-CCTTCTTCCEEECCSSCCCC-CC--CT--TCTTCCEEECCSSCCSCC-----------
T ss_pred EECCCCCcc---------ccc-ccccCCcCCEEECCCCccce-ec--cc--cCCCCCEEECcCCcCCee-----------
Confidence 888777422 111 15566777777777777763 33 11 223455555555555544
Q ss_pred EEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCcccccc
Q 043523 300 LDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGT 379 (650)
Q Consensus 300 L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 379 (650)
....+++|++|++++|+++.+| ...+++|+.+++++|.+.+.. ...+++|+.|+++++
T Consensus 207 -----------~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n----- 264 (457)
T 3bz5_A 207 -----------DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT----- 264 (457)
T ss_dssp -----------CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC-----
T ss_pred -----------ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC-----
Confidence 2333344444444444444443 223555666666666555432 334555666665543
Q ss_pred CChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhh
Q 043523 380 IPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWL 459 (650)
Q Consensus 380 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 459 (650)
+|+.+++++|...+.++ +..+++|+.|++++|...+.+|. ..++|+.|++++|
T Consensus 265 -----------~L~~L~l~~n~~~~~~~---~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~---------- 317 (457)
T 3bz5_A 265 -----------DLLEIDLTHNTQLIYFQ---AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN---------- 317 (457)
T ss_dssp -----------CCSCCCCTTCTTCCEEE---CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC----------
T ss_pred -----------CCCEEECCCCccCCccc---ccccccCCEEECCCCcccceecc---CCCcceEechhhc----------
Confidence 45566666666555544 34566777777777765544442 2334444444433
Q ss_pred hcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccc
Q 043523 460 GNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFS 502 (650)
Q Consensus 460 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 502 (650)
++|++|++++|++++. .+..+++|+.|++++|++.
T Consensus 318 ---~~L~~L~L~~N~l~~l-----~l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 318 ---PKLVYLYLNNTELTEL-----DVSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp ---TTCCEEECTTCCCSCC-----CCTTCTTCSEEECCSSCCC
T ss_pred ---ccCCEEECCCCccccc-----ccccCCcCcEEECCCCCCC
Confidence 5666666666666542 2555666666666666554
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.9e-32 Score=281.48 Aligned_cols=278 Identities=17% Similarity=0.142 Sum_probs=190.7
Q ss_pred CccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEE
Q 043523 317 NTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLN 396 (650)
Q Consensus 317 ~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 396 (650)
+|++|++++|.++.+....+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+.... +|++|+
T Consensus 57 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~--~L~~L~ 134 (477)
T 2id5_A 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY--NLKSLE 134 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT--TCCEEE
T ss_pred CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccc--cCCEEE
Confidence 344444444444433333333355555555555555544444455556666666666665544444443332 666666
Q ss_pred ccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccc
Q 043523 397 LGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFS 476 (650)
Q Consensus 397 l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 476 (650)
+++|.+. .+....|..+++|++|++++|++++..+..+..+++|++|++++|.+....+..|..+++|++|++++|+..
T Consensus 135 l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~ 213 (477)
T 2id5_A 135 VGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213 (477)
T ss_dssp ECCTTCC-EECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTC
T ss_pred CCCCccc-eeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccc
Confidence 6666665 333334677777777777777777666666777777777777777777766666777777777777777665
Q ss_pred eecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcc
Q 043523 477 GHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLL 556 (650)
Q Consensus 477 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (650)
+.. +.......+|++|++++|.++. .+. ..+
T Consensus 214 ~~~--~~~~~~~~~L~~L~l~~n~l~~-~~~----------------------------------------------~~~ 244 (477)
T 2id5_A 214 DTM--TPNCLYGLNLTSLSITHCNLTA-VPY----------------------------------------------LAV 244 (477)
T ss_dssp CEE--CTTTTTTCCCSEEEEESSCCCS-CCH----------------------------------------------HHH
T ss_pred ccc--CcccccCccccEEECcCCcccc-cCH----------------------------------------------HHh
Confidence 443 3334444577777777776652 111 122
Q ss_pred cCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCe
Q 043523 557 KVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSV 636 (650)
Q Consensus 557 ~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~ 636 (650)
..++.|+.|++++|.+.++.+..+..+++|++|+|++|++++..+.+|..+++|++|++++|.++...+..|..+++|+.
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 324 (477)
T 2id5_A 245 RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET 324 (477)
T ss_dssp TTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCE
T ss_pred cCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCE
Confidence 46788899999999998888888899999999999999999888899999999999999999999888888999999999
Q ss_pred EEccCCcCcc
Q 043523 637 LNLSYNNLVG 646 (650)
Q Consensus 637 L~l~~n~~~~ 646 (650)
|++++|++..
T Consensus 325 L~l~~N~l~c 334 (477)
T 2id5_A 325 LILDSNPLAC 334 (477)
T ss_dssp EECCSSCEEC
T ss_pred EEccCCCccC
Confidence 9999998764
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=8.1e-31 Score=262.62 Aligned_cols=307 Identities=20% Similarity=0.268 Sum_probs=221.0
Q ss_pred CCCCCCCcEEEccCCcCCCCCChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccEEe
Q 043523 243 LKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVD 322 (650)
Q Consensus 243 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~ 322 (650)
+..++++++|+++++.+. .++. +.. .++|++|++++|.++.++....+++|++|++++|.
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~~-~~~--~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~---------------- 99 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQG-IEY--LTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNK---------------- 99 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCTT-GGG--CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC----------------
T ss_pred chhcccccEEEEeCCccc-cchh-hhh--cCCccEEEccCCccccchhhhcCCcCCEEEccCCc----------------
Confidence 345566777777777665 3332 222 23466666666666665554445555555555554
Q ss_pred cCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccC
Q 043523 323 YSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNL 402 (650)
Q Consensus 323 l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 402 (650)
++.++. +..+++|+++++++|.+.+..+ +..+++|+.|++++|......+. +. ..++|++|++++|.+
T Consensus 100 -----i~~~~~--~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~-~~--~l~~L~~L~l~~~~~ 167 (347)
T 4fmz_A 100 -----ITDISA--LQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LS--NMTGLNYLTVTESKV 167 (347)
T ss_dssp -----CCCCGG--GTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG-GT--TCTTCCEEECCSSCC
T ss_pred -----ccCchH--HcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccc-hh--hCCCCcEEEecCCCc
Confidence 444331 3346677777777776665433 66777788888887755433333 22 234788888888877
Q ss_pred CCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCC
Q 043523 403 NGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCP 482 (650)
Q Consensus 403 ~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 482 (650)
.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.++...
T Consensus 168 ~~~~~---~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~--- 237 (347)
T 4fmz_A 168 KDVTP---IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS--- 237 (347)
T ss_dssp CCCGG---GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG---
T ss_pred CCchh---hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCc---
Confidence 63322 6778889999999988875433 7788899999999998887544 778899999999999887543
Q ss_pred CCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcc
Q 043523 483 RNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIF 562 (650)
Q Consensus 483 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 562 (650)
.+..+++|++|++++|.++.. .....+++|
T Consensus 238 -~~~~l~~L~~L~l~~n~l~~~-------------------------------------------------~~~~~l~~L 267 (347)
T 4fmz_A 238 -PLANLSQLTWLEIGTNQISDI-------------------------------------------------NAVKDLTKL 267 (347)
T ss_dssp -GGTTCTTCCEEECCSSCCCCC-------------------------------------------------GGGTTCTTC
T ss_pred -chhcCCCCCEEECCCCccCCC-------------------------------------------------hhHhcCCCc
Confidence 277888999999999877531 012357889
Q ss_pred cEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCC
Q 043523 563 TSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYN 642 (650)
Q Consensus 563 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n 642 (650)
++|++++|.+.++ ..+..+++|++|++++|++++..+..++.+++|++|++++|.+++..| +..+++|+.|++++|
T Consensus 268 ~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 268 KMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQ 343 (347)
T ss_dssp CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC
T ss_pred CEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhh
Confidence 9999999998865 468889999999999999998888999999999999999999998766 999999999999999
Q ss_pred cCc
Q 043523 643 NLV 645 (650)
Q Consensus 643 ~~~ 645 (650)
+++
T Consensus 344 ~i~ 346 (347)
T 4fmz_A 344 VIK 346 (347)
T ss_dssp ---
T ss_pred ccc
Confidence 986
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=6.4e-31 Score=275.32 Aligned_cols=297 Identities=20% Similarity=0.197 Sum_probs=254.8
Q ss_pred cEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCcccc
Q 043523 298 RLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLS 377 (650)
Q Consensus 298 ~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 377 (650)
+.++.+++.+.......+++++.|++++|+++.++...+..+++|++|++++|.+.+..|..+.++++|+.|++++|.+.
T Consensus 14 ~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 93 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93 (477)
T ss_dssp TEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC
Confidence 34555555555544445567888888888888777766777999999999999999999999999999999999999988
Q ss_pred ccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccch
Q 043523 378 GTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPC 457 (650)
Q Consensus 378 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 457 (650)
...+..+... ++|++|++++|.+.+. ....|..+++|++|++++|.+.+..+.+|..+++|++|++++|++....+.
T Consensus 94 ~~~~~~~~~l--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 94 LIPLGVFTGL--SNLTKLDISENKIVIL-LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp SCCTTSSTTC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred ccCcccccCC--CCCCEEECCCCccccC-ChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 4444444443 4999999999999844 444599999999999999999988888999999999999999999998888
Q ss_pred hhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCC
Q 043523 458 WLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSN 537 (650)
Q Consensus 458 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~ 537 (650)
.+..+++|++|++++|.+.... ...+..+++|++|++++|+.....+...
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~---------------------------- 220 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIR--DYSFKRLYRLKVLEISHWPYLDTMTPNC---------------------------- 220 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEEC--TTCSCSCTTCCEEEEECCTTCCEECTTT----------------------------
T ss_pred HhcccCCCcEEeCCCCcCcEeC--hhhcccCcccceeeCCCCccccccCccc----------------------------
Confidence 8999999999999999998775 6678899999999999997654433221
Q ss_pred ceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCC
Q 043523 538 QFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSM 617 (650)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~ 617 (650)
....+|++|++++|.+..+....+..+++|+.|+|++|++++..+..|..+++|++|++++
T Consensus 221 -------------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (477)
T 2id5_A 221 -------------------LYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG 281 (477)
T ss_dssp -------------------TTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCS
T ss_pred -------------------ccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCC
Confidence 1234899999999999987777899999999999999999988888999999999999999
Q ss_pred CcCCccCCccccCCCCCCeEEccCCcCcc
Q 043523 618 NNLSGKIPAQLASLNFLSVLNLSYNNLVG 646 (650)
Q Consensus 618 n~i~~~~~~~l~~l~~L~~L~l~~n~~~~ 646 (650)
|.+++..+..|.++++|+.|++++|.+++
T Consensus 282 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 310 (477)
T 2id5_A 282 GQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310 (477)
T ss_dssp SCCSEECTTTBTTCTTCCEEECCSSCCSC
T ss_pred CccceECHHHhcCcccCCEEECCCCcCce
Confidence 99999999999999999999999999985
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=1.2e-30 Score=265.50 Aligned_cols=115 Identities=20% Similarity=0.170 Sum_probs=77.5
Q ss_pred CccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEc
Q 043523 391 TLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVL 470 (650)
Q Consensus 391 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 470 (650)
+|++|++++|.+.+. ....|..+++|++|++++|++++ .+..+..+++|++|++++|++.. .+..+..+++|++|++
T Consensus 249 ~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L 325 (390)
T 3o6n_A 249 GLVEVDLSYNELEKI-MYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYL 325 (390)
T ss_dssp TCSEEECCSSCCCEE-ESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEEC
T ss_pred CccEEECCCCcCCCc-ChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEEC
Confidence 444444444444422 22336667777777777777763 44455667888888888888876 4555777888888888
Q ss_pred cCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhH
Q 043523 471 QSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTM 513 (650)
Q Consensus 471 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l 513 (650)
++|+++.. .+..+++|++|++++|++.+.....|+..+
T Consensus 326 ~~N~i~~~-----~~~~~~~L~~L~l~~N~~~~~~~~~~~~~~ 363 (390)
T 3o6n_A 326 DHNSIVTL-----KLSTHHTLKNLTLSHNDWDCNSLRALFRNV 363 (390)
T ss_dssp CSSCCCCC-----CCCTTCCCSEEECCSSCEEHHHHHHHTTTC
T ss_pred CCCcccee-----CchhhccCCEEEcCCCCccchhHHHHHHHH
Confidence 88887643 256678888999999988876655554443
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=3.2e-29 Score=251.02 Aligned_cols=306 Identities=21% Similarity=0.281 Sum_probs=233.0
Q ss_pred hcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccCCcCCCCCChhHHhhcCcccceeeeccccccCCcCc
Q 043523 212 FELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEP 291 (650)
Q Consensus 212 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~ 291 (650)
..+++|+.|+++++.+..+ +.+..+++|++|++++|.+.+ ++. +. ..++|++|++++|.++.++..
T Consensus 41 ~~l~~L~~L~l~~~~i~~~----------~~~~~~~~L~~L~l~~n~i~~-~~~-~~--~l~~L~~L~L~~n~i~~~~~~ 106 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASI----------QGIEYLTNLEYLNLNGNQITD-ISP-LS--NLVKLTNLYIGTNKITDISAL 106 (347)
T ss_dssp HHHTTCSEEECCSSCCCCC----------TTGGGCTTCCEEECCSSCCCC-CGG-GT--TCTTCCEEECCSSCCCCCGGG
T ss_pred hhcccccEEEEeCCccccc----------hhhhhcCCccEEEccCCcccc-chh-hh--cCCcCCEEEccCCcccCchHH
Confidence 6789999999999988643 337778999999999999984 443 33 345799999999999988776
Q ss_pred ccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEEC
Q 043523 292 YSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDL 371 (650)
Q Consensus 292 ~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l 371 (650)
..+++|+++++++|.+.+. +. +..+++++.+++++|......+ .+..+++|+.|++
T Consensus 107 ~~l~~L~~L~l~~n~i~~~---------------------~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l 162 (347)
T 4fmz_A 107 QNLTNLRELYLNEDNISDI---------------------SP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTV 162 (347)
T ss_dssp TTCTTCSEEECTTSCCCCC---------------------GG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEEC
T ss_pred cCCCcCCEEECcCCcccCc---------------------hh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEe
Confidence 6777888777777765532 22 2235666666666665443333 3677778888888
Q ss_pred cCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCcc
Q 043523 372 SNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHI 451 (650)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l 451 (650)
++|.+.+..+ +. ..++|++|++++|.+.+ ++. +..+++|+.|++++|.+.+..+ +..+++|++|++++|++
T Consensus 163 ~~~~~~~~~~--~~--~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l 233 (347)
T 4fmz_A 163 TESKVKDVTP--IA--NLTDLYSLSLNYNQIED-ISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKI 233 (347)
T ss_dssp CSSCCCCCGG--GG--GCTTCSEEECTTSCCCC-CGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred cCCCcCCchh--hc--cCCCCCEEEccCCcccc-ccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCcc
Confidence 8887763332 22 23488888888888763 332 7788889999999998875544 77889999999999998
Q ss_pred ccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccce
Q 043523 452 SDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLR 531 (650)
Q Consensus 452 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~ 531 (650)
.+..+ +..+++|++|++++|.++.. ..+..+++|++|++++|.+... +
T Consensus 234 ~~~~~--~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~l~~n~l~~~-~------------------------- 281 (347)
T 4fmz_A 234 TDLSP--LANLSQLTWLEIGTNQISDI----NAVKDLTKLKMLNVGSNQISDI-S------------------------- 281 (347)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCCC----GGGTTCTTCCEEECCSSCCCCC-G-------------------------
T ss_pred CCCcc--hhcCCCCCEEECCCCccCCC----hhHhcCCCcCEEEccCCccCCC-h-------------------------
Confidence 88544 78899999999999988753 4577889999999999977532 0
Q ss_pred eeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCC
Q 043523 532 YVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIE 611 (650)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~ 611 (650)
.+..++.|++|++++|.+.+..+..+..+++|++|++++|++++..| ++.+++|+
T Consensus 282 -----------------------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 336 (347)
T 4fmz_A 282 -----------------------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMD 336 (347)
T ss_dssp -----------------------GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCS
T ss_pred -----------------------hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccc
Confidence 12357889999999999998888889999999999999999997655 78899999
Q ss_pred eeeCCCCcCC
Q 043523 612 SLDLSMNNLS 621 (650)
Q Consensus 612 ~L~l~~n~i~ 621 (650)
+|++++|.++
T Consensus 337 ~L~l~~N~i~ 346 (347)
T 4fmz_A 337 SADFANQVIK 346 (347)
T ss_dssp EESSSCC---
T ss_pred eeehhhhccc
Confidence 9999999986
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.4e-29 Score=271.60 Aligned_cols=114 Identities=20% Similarity=0.181 Sum_probs=75.7
Q ss_pred CccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEc
Q 043523 391 TLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVL 470 (650)
Q Consensus 391 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 470 (650)
+|++|++++|.+.+..+ ..|..+++|+.|++++|.+++ +|..+..+++|++|+|++|++.. +|..+..+++|++|++
T Consensus 255 ~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L 331 (597)
T 3oja_B 255 GLVEVDLSYNELEKIMY-HPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYL 331 (597)
T ss_dssp TCSEEECCSSCCCEEES-GGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEEC
T ss_pred CCCEEECCCCccCCCCH-HHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEEC
Confidence 44444444444442222 226666777777777777764 45555667788888888888875 5566677888888888
Q ss_pred cCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHh
Q 043523 471 QSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLT 512 (650)
Q Consensus 471 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 512 (650)
++|+++.. .+..+++|+.|++++|++.|.+...|+..
T Consensus 332 ~~N~l~~~-----~~~~~~~L~~L~l~~N~~~~~~~~~~~~~ 368 (597)
T 3oja_B 332 DHNSIVTL-----KLSTHHTLKNLTLSHNDWDCNSLRALFRN 368 (597)
T ss_dssp CSSCCCCC-----CCCTTCCCSEEECCSSCEEHHHHHHHTTT
T ss_pred CCCCCCCc-----ChhhcCCCCEEEeeCCCCCChhHHHHHHH
Confidence 88887633 25667888888888888887665555443
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=4e-29 Score=254.28 Aligned_cols=308 Identities=18% Similarity=0.133 Sum_probs=204.8
Q ss_pred CCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEE
Q 043523 19 QVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHM 98 (650)
Q Consensus 19 ~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L 98 (650)
.++++++|+++++.+.......|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|+++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 34677777777777655444446667777777777777765555677777777777777777776666667777777777
Q ss_pred EccCCcccccCCcc-ccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCcC
Q 043523 99 DFSSNHFSGHIPSL-HKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQF 177 (650)
Q Consensus 99 ~l~~~~i~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 177 (650)
++++|.+...++.+ ..+++|++|++++|.+.+..+.. ++++++|++|++++|.+... .+..+++|+.+++++|.+
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT-FQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT-TSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhh-ccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 77777777666543 56677777777777776433333 66777777777777776644 245566777777777765
Q ss_pred CCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccCC
Q 043523 178 ENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNN 257 (650)
Q Consensus 178 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~ 257 (650)
... .....|+.+++++|.+. .++. ...++|+.|++++|.++.. +.+..+++|++|++++|
T Consensus 199 ~~~------~~~~~L~~L~l~~n~l~-~~~~---~~~~~L~~L~l~~n~l~~~----------~~l~~l~~L~~L~Ls~n 258 (390)
T 3o6n_A 199 STL------AIPIAVEELDASHNSIN-VVRG---PVNVELTILKLQHNNLTDT----------AWLLNYPGLVEVDLSYN 258 (390)
T ss_dssp SEE------ECCSSCSEEECCSSCCC-EEEC---CCCSSCCEEECCSSCCCCC----------GGGGGCTTCSEEECCSS
T ss_pred ccc------CCCCcceEEECCCCeee-eccc---cccccccEEECCCCCCccc----------HHHcCCCCccEEECCCC
Confidence 521 12356777777777766 3333 2246777777777766532 23566677777777777
Q ss_pred cCCCCCChhHHhhcCcccceeeeccccccCCcCcc-cCCcccEEEeccCcCCCCCCC--CCCCccEEecCCCcCCCCchh
Q 043523 258 QIPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPY-SISSIRLLDLHSNQLRGNIPH--MSTNTSYVDYSNNHFTFIPAD 334 (650)
Q Consensus 258 ~i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~-~l~~L~~L~l~~~~l~~~~~~--~~~~L~~L~l~~~~i~~~~~~ 334 (650)
.+.+..|..+... ++|++|++++|.++.++... .+++|+.|++++|.+.+.... .+++|++|++++|+++.++
T Consensus 259 ~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~-- 334 (390)
T 3o6n_A 259 ELEKIMYHPFVKM--QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK-- 334 (390)
T ss_dssp CCCEEESGGGTTC--SSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--
T ss_pred cCCCcChhHcccc--ccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC--
Confidence 7765556655443 34777777777777765544 367788888888777643322 3467788888888877665
Q ss_pred hhhccCCccEEEccCCccccc
Q 043523 335 IGNFMSETEYFFAANNSLVGV 355 (650)
Q Consensus 335 ~~~~~~~l~~l~l~~~~~~~~ 355 (650)
...+++|+.+++++|.+...
T Consensus 335 -~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 335 -LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp -CCTTCCCSEEECCSSCEEHH
T ss_pred -chhhccCCEEEcCCCCccch
Confidence 23477888888888877654
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.6e-28 Score=243.78 Aligned_cols=289 Identities=17% Similarity=0.224 Sum_probs=226.8
Q ss_pred cccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCcc
Q 043523 296 SIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNN 375 (650)
Q Consensus 296 ~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 375 (650)
+++.++++++.+........+.+++|++++|+++.++...+..+++|+++++++|.+.+..|..+..+++|+.|++++|.
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred CCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc
Confidence 45556666655554444445677778888888887777666678899999999999988888889999999999999998
Q ss_pred ccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCcccc--ccchhcccCCCCCEEeCCCCcccc
Q 043523 376 LSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQG--VVPKSLANCNMLQVLDLKNNHISD 453 (650)
Q Consensus 376 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~--~~~~~~~~l~~L~~L~Ls~n~l~~ 453 (650)
+. .+|..+. ++|++|++++|.+. .++...|..+++|++|++++|.+.. ..+..+..+++|++|++++|.+..
T Consensus 112 l~-~l~~~~~----~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 112 LK-ELPEKMP----KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp CS-BCCSSCC----TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CC-ccChhhc----ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 87 4554433 38999999999988 5555568899999999999998864 567788899999999999999987
Q ss_pred ccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceee
Q 043523 454 NFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYV 533 (650)
Q Consensus 454 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~ 533 (650)
+ |..+ .++|++|++++|+++... +..+..+++|++|++++|.+....+.
T Consensus 186 l-~~~~--~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~-------------------------- 234 (330)
T 1xku_A 186 I-PQGL--PPSLTELHLDGNKITKVD--AASLKGLNNLAKLGLSFNSISAVDNG-------------------------- 234 (330)
T ss_dssp C-CSSC--CTTCSEEECTTSCCCEEC--TGGGTTCTTCCEEECCSSCCCEECTT--------------------------
T ss_pred C-Cccc--cccCCEEECCCCcCCccC--HHHhcCCCCCCEEECCCCcCceeChh--------------------------
Confidence 4 4333 389999999999988765 66788899999999999987643221
Q ss_pred ccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccC------C
Q 043523 534 ISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGN------L 607 (650)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~------l 607 (650)
.+..++.|++|++++|.+. ..+..+..+++|++|++++|++++..+..|.. .
T Consensus 235 ---------------------~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~ 292 (330)
T 1xku_A 235 ---------------------SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKK 292 (330)
T ss_dssp ---------------------TGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTS
T ss_pred ---------------------hccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccccccc
Confidence 1235788999999999998 55567888999999999999999877777754 3
Q ss_pred CCCCeeeCCCCcCCc--cCCccccCCCCCCeEEccCCc
Q 043523 608 KQIESLDLSMNNLSG--KIPAQLASLNFLSVLNLSYNN 643 (650)
Q Consensus 608 ~~L~~L~l~~n~i~~--~~~~~l~~l~~L~~L~l~~n~ 643 (650)
+.|+.|++++|.+.. +.|..|..+++++.+++++|+
T Consensus 293 ~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 293 ASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 789999999999874 677899999999999999985
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.5e-28 Score=244.13 Aligned_cols=288 Identities=17% Similarity=0.236 Sum_probs=231.4
Q ss_pred cccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCcc
Q 043523 296 SIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNN 375 (650)
Q Consensus 296 ~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 375 (650)
.++.++++++.+.......++++++|++++|.++.++...+..+++|+++++++|.+.+..|..+..+++|+.|++++|.
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 113 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC
T ss_pred cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc
Confidence 35555555555554434445677777788877777766666668999999999999998888999999999999999999
Q ss_pred ccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCcccc--ccchhcccCCCCCEEeCCCCcccc
Q 043523 376 LSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQG--VVPKSLANCNMLQVLDLKNNHISD 453 (650)
Q Consensus 376 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~--~~~~~~~~l~~L~~L~Ls~n~l~~ 453 (650)
+. .+|..+. ++|++|++++|.+. .++...|..+++|++|++++|.++. ..+..+..+ +|++|++++|++..
T Consensus 114 l~-~l~~~~~----~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 114 LV-EIPPNLP----SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp CC-SCCSSCC----TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CC-ccCcccc----ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 87 5555443 48999999999998 6666669999999999999999863 567778877 99999999999998
Q ss_pred ccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceee
Q 043523 454 NFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYV 533 (650)
Q Consensus 454 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~ 533 (650)
.|..+ .++|++|++++|.++... +..+..+++|++|++++|.+.+..+.
T Consensus 187 -l~~~~--~~~L~~L~l~~n~i~~~~--~~~l~~l~~L~~L~L~~N~l~~~~~~-------------------------- 235 (332)
T 2ft3_A 187 -IPKDL--PETLNELHLDHNKIQAIE--LEDLLRYSKLYRLGLGHNQIRMIENG-------------------------- 235 (332)
T ss_dssp -CCSSS--CSSCSCCBCCSSCCCCCC--TTSSTTCTTCSCCBCCSSCCCCCCTT--------------------------
T ss_pred -cCccc--cCCCCEEECCCCcCCccC--HHHhcCCCCCCEEECCCCcCCcCChh--------------------------
Confidence 44433 389999999999998664 56788999999999999988643321
Q ss_pred ccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCC------
Q 043523 534 ISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNL------ 607 (650)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l------ 607 (650)
.+..++.|++|++++|.+. ..+..+..+++|++|++++|++++..+..|...
T Consensus 236 ---------------------~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~ 293 (332)
T 2ft3_A 236 ---------------------SLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKR 293 (332)
T ss_dssp ---------------------GGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSS
T ss_pred ---------------------HhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccccccc
Confidence 1245789999999999998 455568899999999999999998777777653
Q ss_pred CCCCeeeCCCCcCC--ccCCccccCCCCCCeEEccCCc
Q 043523 608 KQIESLDLSMNNLS--GKIPAQLASLNFLSVLNLSYNN 643 (650)
Q Consensus 608 ~~L~~L~l~~n~i~--~~~~~~l~~l~~L~~L~l~~n~ 643 (650)
++|+.|++++|.+. ...|..|..+++|+.+++++|+
T Consensus 294 ~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 294 AYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 67999999999998 6788899999999999999985
No 42
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=4.2e-32 Score=283.47 Aligned_cols=172 Identities=15% Similarity=0.105 Sum_probs=96.2
Q ss_pred CCCCccEEEcCCCccccc----cchhcccCCCCCEEeCCCCccccccchhhhc-----CCCCCeEEccCcccceec--CC
Q 043523 413 RNCGLQILDLGGNQLQGV----VPKSLANCNMLQVLDLKNNHISDNFPCWLGN-----ASSLQVLVLQSNNFSGHI--SC 481 (650)
Q Consensus 413 ~l~~L~~L~ls~~~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----~~~L~~L~l~~n~~~~~~--~~ 481 (650)
.+++|++|++++|.++.. .+..+..+++|++|++++|++.+..+..+.. .++|++|++++|.++... .+
T Consensus 254 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 333 (461)
T 1z7x_W 254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF 333 (461)
T ss_dssp TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHH
Confidence 455666777777666643 3455566777777777777776544443332 257777777777765331 01
Q ss_pred CCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCc
Q 043523 482 PRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNI 561 (650)
Q Consensus 482 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (650)
+..+..+++|++|++++|.+.+......... .....+.
T Consensus 334 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~------------------------------------------l~~~~~~ 371 (461)
T 1z7x_W 334 SSVLAQNRFLLELQISNNRLEDAGVRELCQG------------------------------------------LGQPGSV 371 (461)
T ss_dssp HHHHHHCSSCCEEECCSSBCHHHHHHHHHHH------------------------------------------HTSTTCC
T ss_pred HHHHhhCCCccEEEccCCccccccHHHHHHH------------------------------------------HcCCCCc
Confidence 2334455667777777776543211111000 0012456
Q ss_pred ccEEeCCCCcccc----CCCccccCCcCCCEEeCccccCcccCCcCcc-----CCCCCCeeeCCCCcCCccCCc
Q 043523 562 FTSIDFSSNNFEG----PIPEEMGRFKSLYALNMSHNALTGSIPSSFG-----NLKQIESLDLSMNNLSGKIPA 626 (650)
Q Consensus 562 l~~L~l~~~~~~~----~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~-----~l~~L~~L~l~~n~i~~~~~~ 626 (650)
|++|++++|.+++ ..+..+..+++|++|++++|++++.....+. ....|+.|++.++.+....++
T Consensus 372 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~ 445 (461)
T 1z7x_W 372 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED 445 (461)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHH
T ss_pred eEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHH
Confidence 6777777777664 4455566677777777777777743222211 234567777766666544333
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=5.3e-31 Score=275.16 Aligned_cols=244 Identities=21% Similarity=0.163 Sum_probs=169.8
Q ss_pred cccCCCcccEEECcCccccccCChhhhh---ccccCccEEEccCccCCCc----CCCcccCCCCCccEEEcCCCcccccc
Q 043523 359 SVCKGIYFQVLDLSNNNLSGTIPACLIA---QSETTLGVLNLGRNNLNGT----LSDTIFPRNCGLQILDLGGNQLQGVV 431 (650)
Q Consensus 359 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~ls~~~i~~~~ 431 (650)
.+..+++|+.|++++|.+.+..+..+.. ...++|++|++++|.+.+. ++. .+..+++|++|++++|.+.+..
T Consensus 165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~ 243 (461)
T 1z7x_W 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG-IVASKASLRELALGSNKLGDVG 243 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH-HHHHCTTCCEEECCSSBCHHHH
T ss_pred HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH-HHHhCCCccEEeccCCcCChHH
Confidence 4445566677777777665433333222 1123788888888877642 222 3567889999999999887553
Q ss_pred c-----hhcccCCCCCEEeCCCCccccc----cchhhhcCCCCCeEEccCcccceecC--CCCC-CCCCCCCCeeeCCCc
Q 043523 432 P-----KSLANCNMLQVLDLKNNHISDN----FPCWLGNASSLQVLVLQSNNFSGHIS--CPRN-NVSWPLLQIVDLASN 499 (650)
Q Consensus 432 ~-----~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~~-~~~~~~L~~L~l~~n 499 (650)
. ..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+..... +... ....++|++|++++|
T Consensus 244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence 2 2233589999999999999874 45667779999999999999864320 0111 123479999999999
Q ss_pred ccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCcc
Q 043523 500 KFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEE 579 (650)
Q Consensus 500 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~ 579 (650)
.+++.....+.. .+..++.|++|++++|.+.+..+..
T Consensus 324 ~l~~~~~~~l~~-------------------------------------------~l~~~~~L~~L~Ls~n~i~~~~~~~ 360 (461)
T 1z7x_W 324 SFTAACCSHFSS-------------------------------------------VLAQNRFLLELQISNNRLEDAGVRE 360 (461)
T ss_dssp CCBGGGHHHHHH-------------------------------------------HHHHCSSCCEEECCSSBCHHHHHHH
T ss_pred CCchHHHHHHHH-------------------------------------------HHhhCCCccEEEccCCccccccHHH
Confidence 887543222211 1124688999999999988665544
Q ss_pred ccC-----CcCCCEEeCccccCcc----cCCcCccCCCCCCeeeCCCCcCCccCCcccc-----CCCCCCeEEccCCcCc
Q 043523 580 MGR-----FKSLYALNMSHNALTG----SIPSSFGNLKQIESLDLSMNNLSGKIPAQLA-----SLNFLSVLNLSYNNLV 645 (650)
Q Consensus 580 ~~~-----l~~L~~L~ls~n~i~~----~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~-----~l~~L~~L~l~~n~~~ 645 (650)
+.. .++|++|++++|++++ .++.++..+++|++|++++|+++......+. ....|+.|++.++...
T Consensus 361 l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 361 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred HHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 443 6799999999999996 6778888899999999999999865333332 2456888888887765
Q ss_pred c
Q 043523 646 G 646 (650)
Q Consensus 646 ~ 646 (650)
.
T Consensus 441 ~ 441 (461)
T 1z7x_W 441 E 441 (461)
T ss_dssp H
T ss_pred H
Confidence 3
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=3.8e-28 Score=260.58 Aligned_cols=307 Identities=18% Similarity=0.143 Sum_probs=182.2
Q ss_pred CCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEE
Q 043523 20 VPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMD 99 (650)
Q Consensus 20 ~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~ 99 (650)
+++++.++++++.+.......|..+++|++|+|++|.+.+..+..|+.+++|++|++++|.+++..|..|+++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 45566666666666444444455566666666666666655555666666666666666666655555666666666666
Q ss_pred ccCCcccccCCcc-ccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCcCC
Q 043523 100 FSSNHFSGHIPSL-HKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFE 178 (650)
Q Consensus 100 l~~~~i~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 178 (650)
+++|.+...++.+ ..+++|++|++++|.+++..+.. +.++++|+.|++++|.+... .+..+++|+.+++++|.+.
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT-FQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT-TTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhh-hhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccc
Confidence 6666666555543 45566666666666665433333 56666666666666666543 2344566666666666554
Q ss_pred CCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccCCc
Q 043523 179 NQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQ 258 (650)
Q Consensus 179 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~ 258 (650)
.. .....|+.|++++|.+. .++... .++|+.|++++|.++.. +.+..+++|+.|++++|.
T Consensus 206 ~l------~~~~~L~~L~ls~n~l~-~~~~~~---~~~L~~L~L~~n~l~~~----------~~l~~l~~L~~L~Ls~N~ 265 (597)
T 3oja_B 206 TL------AIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTDT----------AWLLNYPGLVEVDLSYNE 265 (597)
T ss_dssp EE------ECCTTCSEEECCSSCCC-EEECSC---CSCCCEEECCSSCCCCC----------GGGGGCTTCSEEECCSSC
T ss_pred cc------cCCchhheeeccCCccc-cccccc---CCCCCEEECCCCCCCCC----------hhhccCCCCCEEECCCCc
Confidence 21 12345666666666655 333222 25666666666665521 225556666666666666
Q ss_pred CCCCCChhHHhhcCcccceeeeccccccCCcCccc-CCcccEEEeccCcCCCCCCC--CCCCccEEecCCCcCCCCchhh
Q 043523 259 IPGEIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYS-ISSIRLLDLHSNQLRGNIPH--MSTNTSYVDYSNNHFTFIPADI 335 (650)
Q Consensus 259 i~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~-l~~L~~L~l~~~~l~~~~~~--~~~~L~~L~l~~~~i~~~~~~~ 335 (650)
+.+..|.++... ++|+.|++++|.+..++.... +++|+.|++++|.+...... .+++|++|++++|+++.++
T Consensus 266 l~~~~~~~~~~l--~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--- 340 (597)
T 3oja_B 266 LEKIMYHPFVKM--QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--- 340 (597)
T ss_dssp CCEEESGGGTTC--SSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC---
T ss_pred cCCCCHHHhcCc--cCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC---
Confidence 665555555433 346666666666666654443 66777777777766643221 3466777777777776654
Q ss_pred hhccCCccEEEccCCccccc
Q 043523 336 GNFMSETEYFFAANNSLVGV 355 (650)
Q Consensus 336 ~~~~~~l~~l~l~~~~~~~~ 355 (650)
...++.|+.+++++|.+.+.
T Consensus 341 ~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 341 LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp CCTTCCCSEEECCSSCEEHH
T ss_pred hhhcCCCCEEEeeCCCCCCh
Confidence 22366777777777776643
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=4.9e-29 Score=244.56 Aligned_cols=249 Identities=27% Similarity=0.414 Sum_probs=162.4
Q ss_pred CCccEEEccCCcccc--cccccccCCCcccEEECcC-ccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCC
Q 043523 340 SETEYFFAANNSLVG--VIPESVCKGIYFQVLDLSN-NNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCG 416 (650)
Q Consensus 340 ~~l~~l~l~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 416 (650)
..++.++++++.+.+ .+|..+..+++|+.|++++ |.+.+.+|..+.... +|++|++++|.+.+.++.. |..+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~--~L~~L~Ls~n~l~~~~p~~-~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT--QLHYLYITHTNVSGAIPDF-LSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT--TCSEEEEEEECCEEECCGG-GGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCC--CCCEEECcCCeeCCcCCHH-HhCCCC
Confidence 345555666665555 5566666666666666663 556555665554433 6666666666665444443 666666
Q ss_pred ccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCC-CCCeEEccCcccceecCCCCCCCCCCCCCeee
Q 043523 417 LQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNAS-SLQVLVLQSNNFSGHISCPRNNVSWPLLQIVD 495 (650)
Q Consensus 417 L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ 495 (650)
|++|++++|.+.+..|..+..+++|++|++++|++.+..|..+..++ +|++|++++|++++.. +..+..++ |++|+
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~--~~~~~~l~-L~~L~ 203 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI--PPTFANLN-LAFVD 203 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC--CGGGGGCC-CSEEE
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccC--ChHHhCCc-ccEEE
Confidence 77777777776666666666677777777777776655666666665 6777777777666443 44555554 67777
Q ss_pred CCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccC
Q 043523 496 LASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGP 575 (650)
Q Consensus 496 l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~ 575 (650)
+++|.+.+..+ ..+..++.|+.|++++|.+.+.
T Consensus 204 Ls~N~l~~~~~-----------------------------------------------~~~~~l~~L~~L~L~~N~l~~~ 236 (313)
T 1ogq_A 204 LSRNMLEGDAS-----------------------------------------------VLFGSDKNTQKIHLAKNSLAFD 236 (313)
T ss_dssp CCSSEEEECCG-----------------------------------------------GGCCTTSCCSEEECCSSEECCB
T ss_pred CcCCcccCcCC-----------------------------------------------HHHhcCCCCCEEECCCCceeee
Confidence 77766543221 1123456677777777777654
Q ss_pred CCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCc
Q 043523 576 IPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNN 643 (650)
Q Consensus 576 ~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~ 643 (650)
.+. +..+++|++|++++|++++..|.++..+++|++|++++|++++.+|.. .++++|+.+++++|+
T Consensus 237 ~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 237 LGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp GGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred cCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 443 666778888888888887777777777888888888888887766665 777778888888887
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=3e-27 Score=234.51 Aligned_cols=269 Identities=20% Similarity=0.210 Sum_probs=232.6
Q ss_pred CCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEE
Q 043523 316 TNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVL 395 (650)
Q Consensus 316 ~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 395 (650)
.+++.++++++.++.+|..+ .+.++.+++++|.+.+..+..+..+++|+.|++++|.+.+..|..+.... +|++|
T Consensus 31 c~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L 105 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV--KLERL 105 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT--TCCEE
T ss_pred CCCeEEEecCCCccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCC--CCCEE
Confidence 47899999999999998765 47899999999999988888899999999999999999877677776544 99999
Q ss_pred EccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCcccc--ccchhhhcCCCCCeEEccCc
Q 043523 396 NLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISD--NFPCWLGNASSLQVLVLQSN 473 (650)
Q Consensus 396 ~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~~~~L~~L~l~~n 473 (650)
++++|.+. .++...+ ++|++|++++|.+.+..+..+..+++|++|++++|++.. ..+..+.++++|++|++++|
T Consensus 106 ~Ls~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 181 (330)
T 1xku_A 106 YLSKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181 (330)
T ss_dssp ECCSSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred ECCCCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC
Confidence 99999988 6666544 689999999999998888889999999999999999974 56778999999999999999
Q ss_pred ccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchh
Q 043523 474 NFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVET 553 (650)
Q Consensus 474 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 553 (650)
.++.. +..+ .++|++|++++|.+....+.
T Consensus 182 ~l~~l---~~~~--~~~L~~L~l~~n~l~~~~~~---------------------------------------------- 210 (330)
T 1xku_A 182 NITTI---PQGL--PPSLTELHLDGNKITKVDAA---------------------------------------------- 210 (330)
T ss_dssp CCCSC---CSSC--CTTCSEEECTTSCCCEECTG----------------------------------------------
T ss_pred ccccC---Cccc--cccCCEEECCCCcCCccCHH----------------------------------------------
Confidence 98754 3322 28999999999987643222
Q ss_pred hcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCC--
Q 043523 554 MLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASL-- 631 (650)
Q Consensus 554 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l-- 631 (650)
.+..++.|++|++++|.+.+..+..+..+++|++|++++|+++ .+|.++..+++|++|++++|.++++.+..|...
T Consensus 211 -~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~ 288 (330)
T 1xku_A 211 -SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 288 (330)
T ss_dssp -GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSC
T ss_pred -HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccc
Confidence 2246788999999999999888888999999999999999999 788889999999999999999999888877543
Q ss_pred ----CCCCeEEccCCcCcc
Q 043523 632 ----NFLSVLNLSYNNLVG 646 (650)
Q Consensus 632 ----~~L~~L~l~~n~~~~ 646 (650)
+.++.|++++|++..
T Consensus 289 ~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 289 NTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp CTTSCCCSEEECCSSSSCG
T ss_pred ccccccccceEeecCcccc
Confidence 789999999999863
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=3.3e-28 Score=238.66 Aligned_cols=233 Identities=29% Similarity=0.477 Sum_probs=208.3
Q ss_pred CcccEEECcCccccc--cCChhhhhccccCccEEEccC-ccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCC
Q 043523 364 IYFQVLDLSNNNLSG--TIPACLIAQSETTLGVLNLGR-NNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNM 440 (650)
Q Consensus 364 ~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~ 440 (650)
.+++.|++++|.+.+ .+|..+.... +|++|++++ |.+.+.++.. |..+++|++|++++|.+++..|..+..+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~--~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLP--YLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCT--TCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCC--CCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 579999999999998 7888777654 999999995 8888777766 899999999999999999889999999999
Q ss_pred CCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCC-CCCeeeCCCcccccccChHHHHhHHhhHhh
Q 043523 441 LQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWP-LLQIVDLASNKFSGRLSQKWLLTMEEMMVA 519 (650)
Q Consensus 441 L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~ 519 (650)
|++|++++|.+.+..|..+..+++|++|++++|++++.. +..+..++ +|++|++++|.+.+..+...
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~~L~~L~L~~N~l~~~~~~~~---------- 194 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI--PDSYGSFSKLFTSMTISRNRLTGKIPPTF---------- 194 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEEC--CGGGGCCCTTCCEEECCSSEEEEECCGGG----------
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcC--CHHHhhhhhcCcEEECcCCeeeccCChHH----------
Confidence 999999999999888999999999999999999998655 77788887 99999999999875544322
Q ss_pred hcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCccc
Q 043523 520 ETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGS 599 (650)
Q Consensus 520 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~ 599 (650)
...+ |++|++++|.+.+..+..+..+++|+.|++++|++++.
T Consensus 195 -------------------------------------~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 236 (313)
T 1ogq_A 195 -------------------------------------ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236 (313)
T ss_dssp -------------------------------------GGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred -------------------------------------hCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence 1233 89999999999999999999999999999999999966
Q ss_pred CCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCcCcccCCC
Q 043523 600 IPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGKIPT 650 (650)
Q Consensus 600 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~ 650 (650)
.+. +..+++|++|++++|.+++..|..+..+++|+.|++++|+++|.+|+
T Consensus 237 ~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 237 LGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp GGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred cCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 655 78899999999999999999999999999999999999999999995
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=3.3e-27 Score=234.33 Aligned_cols=267 Identities=16% Similarity=0.205 Sum_probs=229.9
Q ss_pred CCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEE
Q 043523 316 TNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVL 395 (650)
Q Consensus 316 ~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 395 (650)
..++.++++++.++.+|..+ .+.++.+++++|.+.+..+..+..+++|+.|++++|.+.+..+..+.... +|++|
T Consensus 33 c~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L 107 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLR--KLQKL 107 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCT--TCCEE
T ss_pred ccCCEEECCCCCccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcC--CCCEE
Confidence 46899999999999998876 47899999999999988888999999999999999999877677665544 99999
Q ss_pred EccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCcccc--ccchhhhcCCCCCeEEccCc
Q 043523 396 NLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISD--NFPCWLGNASSLQVLVLQSN 473 (650)
Q Consensus 396 ~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~~~~L~~L~l~~n 473 (650)
++++|.+. .++...+ ++|++|++++|++.+..+..|..+++|++|++++|++.. ..+..+..+ +|++|++++|
T Consensus 108 ~L~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n 182 (332)
T 2ft3_A 108 YISKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA 182 (332)
T ss_dssp ECCSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS
T ss_pred ECCCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC
Confidence 99999998 6666544 789999999999997777889999999999999999964 566777777 9999999999
Q ss_pred ccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchh
Q 043523 474 NFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVET 553 (650)
Q Consensus 474 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 553 (650)
.++.. +..+ .++|++|++++|.+....+
T Consensus 183 ~l~~l---~~~~--~~~L~~L~l~~n~i~~~~~----------------------------------------------- 210 (332)
T 2ft3_A 183 KLTGI---PKDL--PETLNELHLDHNKIQAIEL----------------------------------------------- 210 (332)
T ss_dssp BCSSC---CSSS--CSSCSCCBCCSSCCCCCCT-----------------------------------------------
T ss_pred CCCcc---Cccc--cCCCCEEECCCCcCCccCH-----------------------------------------------
Confidence 98753 3332 2799999999998764322
Q ss_pred hcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCC--
Q 043523 554 MLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASL-- 631 (650)
Q Consensus 554 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l-- 631 (650)
..+..++.|++|++++|.+.+..+..+..+++|++|++++|+++ .+|.++..+++|++|++++|.++...+..|...
T Consensus 211 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 289 (332)
T 2ft3_A 211 EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF 289 (332)
T ss_dssp TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSC
T ss_pred HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccc
Confidence 12346788999999999999888888999999999999999999 788889999999999999999999888877654
Q ss_pred ----CCCCeEEccCCcCc
Q 043523 632 ----NFLSVLNLSYNNLV 645 (650)
Q Consensus 632 ----~~L~~L~l~~n~~~ 645 (650)
++|+.|++++|++.
T Consensus 290 ~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 290 GVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CSSSCCBSEEECCSSSSC
T ss_pred ccccccccceEeecCccc
Confidence 67999999999987
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1e-27 Score=240.20 Aligned_cols=275 Identities=16% Similarity=0.178 Sum_probs=181.9
Q ss_pred EEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccC
Q 043523 320 YVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGR 399 (650)
Q Consensus 320 ~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 399 (650)
..+.+++.++.+|..+ .+.++++++++|.+.+..+..+..+++|+.|++++|.+.+..+..+.... +|++|++++
T Consensus 35 ~c~~~~~~l~~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~ 109 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG--SLEHLDLSY 109 (353)
T ss_dssp EEECCSTTCSSCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT--TCCEEECCS
T ss_pred EeeCCCCCcccccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC--CCCEEECCC
Confidence 3555566666666544 34666666666666665555666667777777777766654444444332 677777777
Q ss_pred ccCCCcCCCcccCCCCCccEEEcCCCccccccc-hhcccCCCCCEEeCCCC-ccccccchhhhcCCCCCeEEccCcccce
Q 043523 400 NNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVP-KSLANCNMLQVLDLKNN-HISDNFPCWLGNASSLQVLVLQSNNFSG 477 (650)
Q Consensus 400 ~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 477 (650)
|.+. .++...|..+++|++|++++|++++... ..+..+++|++|++++| .+....+..+.++++|++|++++|.+.+
T Consensus 110 n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 110 NYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp SCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 7766 4444446677777777777777764433 46677777777777777 4666556667777777777777777766
Q ss_pred ecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhccc
Q 043523 478 HISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLK 557 (650)
Q Consensus 478 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (650)
.. +..+..+++|++|++++|.+... +. ....
T Consensus 189 ~~--~~~l~~l~~L~~L~l~~n~l~~~-~~----------------------------------------------~~~~ 219 (353)
T 2z80_A 189 YE--PKSLKSIQNVSHLILHMKQHILL-LE----------------------------------------------IFVD 219 (353)
T ss_dssp EC--TTTTTTCSEEEEEEEECSCSTTH-HH----------------------------------------------HHHH
T ss_pred cC--HHHHhccccCCeecCCCCccccc-hh----------------------------------------------hhhh
Confidence 54 55666777777777777765311 11 1112
Q ss_pred CCCcccEEeCCCCccccCCCccc---cCCcCCCEEeCccccCcc----cCCcCccCCCCCCeeeCCCCcCCccCCccccC
Q 043523 558 VPNIFTSIDFSSNNFEGPIPEEM---GRFKSLYALNMSHNALTG----SIPSSFGNLKQIESLDLSMNNLSGKIPAQLAS 630 (650)
Q Consensus 558 ~~~~l~~L~l~~~~~~~~~~~~~---~~l~~L~~L~ls~n~i~~----~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~ 630 (650)
.+++|+.|++++|.+++.....+ .....++.++++++.+++ .+|.+++.+++|++|++++|+++.+++..|.+
T Consensus 220 ~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~ 299 (353)
T 2z80_A 220 VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDR 299 (353)
T ss_dssp HTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred hcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhc
Confidence 35677778888887776544333 235667777787777764 35667788888888888888888666666788
Q ss_pred CCCCCeEEccCCcCcccCC
Q 043523 631 LNFLSVLNLSYNNLVGKIP 649 (650)
Q Consensus 631 l~~L~~L~l~~n~~~~~~p 649 (650)
+++|+.|++++|++.+..|
T Consensus 300 l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 300 LTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CTTCCEEECCSSCBCCCHH
T ss_pred CCCCCEEEeeCCCccCcCC
Confidence 8888888888888877544
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=2.3e-26 Score=225.67 Aligned_cols=248 Identities=22% Similarity=0.226 Sum_probs=147.7
Q ss_pred cEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccC--ChhhhhccccCccEEE
Q 043523 319 SYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTI--PACLIAQSETTLGVLN 396 (650)
Q Consensus 319 ~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~ 396 (650)
+.++++++.++.+|..+ .++++++++++|.+....+..+..+++|+.|++++|.+.... +..+.. .++|++|+
T Consensus 10 ~~l~c~~~~l~~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~--~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG--TTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHS--CSCCCEEE
T ss_pred CEEEcCCCCcccCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccc--ccccCEEE
Confidence 45566666666666544 356666777766666544444566777777777777665221 233322 23666666
Q ss_pred ccCccCCCcCCCcccCCCCCccEEEcCCCccccccc-hhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCccc
Q 043523 397 LGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVP-KSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNF 475 (650)
Q Consensus 397 l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 475 (650)
+++|.+. .++.. +..+++|++|++++|++++..+ ..+..+++|++|++++|++....+..+..+++|++|++++|.+
T Consensus 85 Ls~n~i~-~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 85 LSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp CCSCSEE-EEEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred CCCCccc-cChhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc
Confidence 6666665 33333 5667777777777777765443 4566777777777777777766666666777777777777776
Q ss_pred ce-ecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhh
Q 043523 476 SG-HISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETM 554 (650)
Q Consensus 476 ~~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 554 (650)
.+ .. +..+..+++|++|++++|.++...+.
T Consensus 163 ~~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~----------------------------------------------- 193 (306)
T 2z66_A 163 QENFL--PDIFTELRNLTFLDLSQCQLEQLSPT----------------------------------------------- 193 (306)
T ss_dssp GGGEE--CSCCTTCTTCCEEECTTSCCCEECTT-----------------------------------------------
T ss_pred ccccc--hhHHhhCcCCCEEECCCCCcCCcCHH-----------------------------------------------
Confidence 54 22 44555666666666666655422111
Q ss_pred cccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCC-CCCeeeCCCCcCCc
Q 043523 555 LLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLK-QIESLDLSMNNLSG 622 (650)
Q Consensus 555 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~-~L~~L~l~~n~i~~ 622 (650)
.+..++.|++|++++|.+.+..+..+..+++|++|++++|++++..+..+..++ +|++|++++|.++.
T Consensus 194 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 194 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp TTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred HhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 112345555555555555555555555566666666666666655555555553 56666666666654
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=5.4e-26 Score=235.60 Aligned_cols=248 Identities=21% Similarity=0.177 Sum_probs=165.5
Q ss_pred ccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEc
Q 043523 318 TSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNL 397 (650)
Q Consensus 318 L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 397 (650)
...++.++..++.+|..+ .+.++.|++++|.+.+..+..+..+++|+.|++++|.+.+..+.
T Consensus 56 ~~~v~c~~~~l~~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~--------------- 117 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVG--------------- 117 (452)
T ss_dssp SCEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT---------------
T ss_pred CcEEEECCCCcCccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChh---------------
Confidence 456677777777777654 35667777777777666666666666666666666665533332
Q ss_pred cCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccce
Q 043523 398 GRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSG 477 (650)
Q Consensus 398 ~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 477 (650)
.|..+++|++|++++|+++...+..|..+++|++|+|++|++..+.+..|..+++|++|++++|...+
T Consensus 118 ------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~ 185 (452)
T 3zyi_A 118 ------------AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE 185 (452)
T ss_dssp ------------TTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC
T ss_pred ------------hccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcc
Confidence 35555555566665555554444555555666666666666555444455556666666666533222
Q ss_pred ecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhccc
Q 043523 478 HISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLK 557 (650)
Q Consensus 478 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (650)
... ...+.++++|++|++++|.+.... .+.
T Consensus 186 ~i~-~~~~~~l~~L~~L~L~~n~l~~~~-------------------------------------------------~~~ 215 (452)
T 3zyi_A 186 YIS-EGAFEGLFNLKYLNLGMCNIKDMP-------------------------------------------------NLT 215 (452)
T ss_dssp EEC-TTTTTTCTTCCEEECTTSCCSSCC-------------------------------------------------CCT
T ss_pred ccC-hhhccCCCCCCEEECCCCcccccc-------------------------------------------------ccc
Confidence 211 334555666666666666543210 012
Q ss_pred CCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeE
Q 043523 558 VPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVL 637 (650)
Q Consensus 558 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L 637 (650)
.+++|+.|++++|.+.++.+..+..+++|+.|++++|++++..+.+|..+++|++|++++|++++.++..|..+++|+.|
T Consensus 216 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 295 (452)
T 3zyi_A 216 PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVEL 295 (452)
T ss_dssp TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEE
T ss_pred ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEE
Confidence 45677778888888877778888888999999999999988888888889999999999999988888888889999999
Q ss_pred EccCCcCc
Q 043523 638 NLSYNNLV 645 (650)
Q Consensus 638 ~l~~n~~~ 645 (650)
++++|++.
T Consensus 296 ~L~~Np~~ 303 (452)
T 3zyi_A 296 HLHHNPWN 303 (452)
T ss_dssp ECCSSCEE
T ss_pred EccCCCcC
Confidence 99998864
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=5.5e-26 Score=234.67 Aligned_cols=248 Identities=21% Similarity=0.170 Sum_probs=158.3
Q ss_pred ccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEc
Q 043523 318 TSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNL 397 (650)
Q Consensus 318 L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 397 (650)
...++.++..++.+|..+ .+.++.+++++|.+....+..+..+++|+.|++++|.+....+..
T Consensus 45 ~~~v~c~~~~l~~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~-------------- 107 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGA-------------- 107 (440)
T ss_dssp SCEEECCSCCCSSCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGG--------------
T ss_pred CCEEEeCCCCcCcCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhh--------------
Confidence 456777777788777765 367777777777777776677777777777777777665333333
Q ss_pred cCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccce
Q 043523 398 GRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSG 477 (650)
Q Consensus 398 ~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 477 (650)
|..+++|++|++++|+++...+..|..+++|++|+|++|++..+.+..|..+++|++|++++|....
T Consensus 108 -------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~ 174 (440)
T 3zyj_A 108 -------------FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS 174 (440)
T ss_dssp -------------GTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC
T ss_pred -------------ccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcc
Confidence 4444445555555554443333444455555555555555544444444455555555555433222
Q ss_pred ecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhccc
Q 043523 478 HISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLK 557 (650)
Q Consensus 478 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (650)
... ...+.++++|++|++++|.++... .+.
T Consensus 175 ~i~-~~~~~~l~~L~~L~L~~n~l~~~~-------------------------------------------------~~~ 204 (440)
T 3zyj_A 175 YIS-EGAFEGLSNLRYLNLAMCNLREIP-------------------------------------------------NLT 204 (440)
T ss_dssp EEC-TTTTTTCSSCCEEECTTSCCSSCC-------------------------------------------------CCT
T ss_pred eeC-cchhhcccccCeecCCCCcCcccc-------------------------------------------------ccC
Confidence 110 233444555555555555443100 012
Q ss_pred CCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeE
Q 043523 558 VPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVL 637 (650)
Q Consensus 558 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L 637 (650)
.+++|++|++++|.+.++.+..+..+++|+.|++++|++++..+.+|..+++|++|++++|+++..++..|..+++|+.|
T Consensus 205 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 284 (440)
T 3zyj_A 205 PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI 284 (440)
T ss_dssp TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEE
T ss_pred CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEE
Confidence 45666777777777777777788888888888888888888888888888888888888888888888888888888888
Q ss_pred EccCCcCc
Q 043523 638 NLSYNNLV 645 (650)
Q Consensus 638 ~l~~n~~~ 645 (650)
++++|++.
T Consensus 285 ~L~~Np~~ 292 (440)
T 3zyj_A 285 HLHHNPWN 292 (440)
T ss_dssp ECCSSCEE
T ss_pred EcCCCCcc
Confidence 88888764
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=2.8e-26 Score=224.99 Aligned_cols=282 Identities=18% Similarity=0.223 Sum_probs=219.6
Q ss_pred EEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCccccc--ccccccCCCcccEEECcCccc
Q 043523 299 LLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGV--IPESVCKGIYFQVLDLSNNNL 376 (650)
Q Consensus 299 ~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~ 376 (650)
.++.+++.+.......++++++|++++|+++.++...+..+++|+.+++++|.+... .+..+..+++|+.|++++|.+
T Consensus 11 ~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i 90 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 90 (306)
T ss_dssp EEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE
T ss_pred EEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcc
Confidence 455555555554444556778888888888888877777788899999998887743 356677788999999999988
Q ss_pred cccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCcccc-cc
Q 043523 377 SGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISD-NF 455 (650)
Q Consensus 377 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~ 455 (650)
. .++..+.. .++|++|++++|.+.+..+...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..
T Consensus 91 ~-~l~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 167 (306)
T 2z66_A 91 I-TMSSNFLG--LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167 (306)
T ss_dssp E-EEEEEEET--CTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred c-cChhhcCC--CCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence 7 34444433 34899999999988854443568899999999999999988888889999999999999999986 57
Q ss_pred chhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeecc
Q 043523 456 PCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVIS 535 (650)
Q Consensus 456 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~ 535 (650)
+..+..+++|++|++++|.+++.. +..+..+++|++|++++|.++...+.
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~---------------------------- 217 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQLEQLS--PTAFNSLSSLQVLNMSHNNFFSLDTF---------------------------- 217 (306)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTSCCSBCCSG----------------------------
T ss_pred hhHHhhCcCCCEEECCCCCcCCcC--HHHhcCCCCCCEEECCCCccCccChh----------------------------
Confidence 888899999999999999998765 66788899999999999987643221
Q ss_pred CCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCc-CCCEEeCccccCcccCC-cC-ccCCCCCCe
Q 043523 536 SNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFK-SLYALNMSHNALTGSIP-SS-FGNLKQIES 612 (650)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~-~L~~L~ls~n~i~~~~~-~~-~~~l~~L~~ 612 (650)
.+..+++|++|++++|.+.+..+..+..++ +|++|++++|+++..-+ .+ ..-+...+.
T Consensus 218 -------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~ 278 (306)
T 2z66_A 218 -------------------PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQ 278 (306)
T ss_dssp -------------------GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGG
T ss_pred -------------------hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhh
Confidence 224678999999999999998888888884 99999999999985321 11 122345566
Q ss_pred eeCCCCcCCccCCccccCCC
Q 043523 613 LDLSMNNLSGKIPAQLASLN 632 (650)
Q Consensus 613 L~l~~n~i~~~~~~~l~~l~ 632 (650)
+....+.+....|..+++.+
T Consensus 279 ~~~~~~~~~C~~p~~~~g~~ 298 (306)
T 2z66_A 279 LLVEVERMECATPSDKQGMP 298 (306)
T ss_dssp GBSCGGGCBEEESGGGTTCB
T ss_pred hhccccccccCCchhhCCce
Confidence 67777888888888877654
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.4e-25 Score=217.44 Aligned_cols=226 Identities=21% Similarity=0.217 Sum_probs=178.7
Q ss_pred cEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeC
Q 043523 367 QVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDL 446 (650)
Q Consensus 367 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L 446 (650)
+.++.+++.+. .+|..+ .+++++|++++|.+. .++...|..+++|++|++++|.+++..+.+|..+++|++|++
T Consensus 14 ~~~~c~~~~l~-~ip~~~----~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 87 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI----PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87 (285)
T ss_dssp CEEECCSSCCS-SCCTTC----CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred eEEEcCcCCcc-cCCcCC----CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeC
Confidence 45666666655 344332 237888888888877 455555888888888888888888777888888888888888
Q ss_pred CCCc-cccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCc
Q 043523 447 KNNH-ISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGS 525 (650)
Q Consensus 447 s~n~-l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~ 525 (650)
++|+ +....+..+..+++|++|++++|.++... +..+.++++|++|++++|.+....+
T Consensus 88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~------------------- 146 (285)
T 1ozn_A 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG--PGLFRGLAALQYLYLQDNALQALPD------------------- 146 (285)
T ss_dssp CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCT-------------------
T ss_pred CCCCCccccCHHHhcCCcCCCEEECCCCcCCEEC--HhHhhCCcCCCEEECCCCcccccCH-------------------
Confidence 8887 77766778888888888888888887554 5667788888888888887653221
Q ss_pred ccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCcc
Q 043523 526 ELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFG 605 (650)
Q Consensus 526 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~ 605 (650)
..+..+++|++|++++|.+.++.+..+..+++|++|++++|++++..|.+|+
T Consensus 147 ----------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 198 (285)
T 1ozn_A 147 ----------------------------DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198 (285)
T ss_dssp ----------------------------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred ----------------------------hHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHcc
Confidence 1224577888899999988877777888899999999999999988888999
Q ss_pred CCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCcCccc
Q 043523 606 NLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGK 647 (650)
Q Consensus 606 ~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~ 647 (650)
.+++|++|++++|.+++.++..+..+++|+.|++++|++...
T Consensus 199 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred CcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 999999999999999988888899999999999999988753
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=2.5e-26 Score=230.17 Aligned_cols=282 Identities=18% Similarity=0.196 Sum_probs=195.3
Q ss_pred CcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCc
Q 043523 295 SSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNN 374 (650)
Q Consensus 295 ~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 374 (650)
+.....+.+++.+.......++++++|++++|+++.++...+..+++|+.+++++|.+.+..+..+..+++|+.|++++|
T Consensus 31 ~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp CTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence 33344555555555544444566777777777777666655566788888888888887777777888888888888888
Q ss_pred cccccCChhhhhccccCccEEEccCccCCCcCCC-cccCCCCCccEEEcCCC-ccccccchhcccCCCCCEEeCCCCccc
Q 043523 375 NLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSD-TIFPRNCGLQILDLGGN-QLQGVVPKSLANCNMLQVLDLKNNHIS 452 (650)
Q Consensus 375 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~ls~~-~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 452 (650)
.+.+..+..+... ++|++|++++|.+. .++. ..|..+++|++|++++| .+....+..+..+++|++|++++|++.
T Consensus 111 ~l~~~~~~~~~~l--~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 111 YLSNLSSSWFKPL--SSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp CCSSCCHHHHTTC--TTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred cCCcCCHhHhCCC--ccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence 8774333223333 37888888888877 4444 55778888888888888 466556677888888888888888888
Q ss_pred cccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCccccccee
Q 043523 453 DNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRY 532 (650)
Q Consensus 453 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~ 532 (650)
+..+..+..+++|++|++++|.+.... ...+..+++|++|++++|.+.+.......
T Consensus 188 ~~~~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~L~~n~l~~~~~~~l~---------------------- 243 (353)
T 2z80_A 188 SYEPKSLKSIQNVSHLILHMKQHILLL--EIFVDVTSSVECLELRDTDLDTFHFSELS---------------------- 243 (353)
T ss_dssp EECTTTTTTCSEEEEEEEECSCSTTHH--HHHHHHTTTEEEEEEESCBCTTCCCC-------------------------
T ss_pred ccCHHHHhccccCCeecCCCCccccch--hhhhhhcccccEEECCCCccccccccccc----------------------
Confidence 777777888888888888888875332 22233467888888888877643221100
Q ss_pred eccCCceeecceEEeeccchhhcccCCCcccEEeCCCCcccc----CCCccccCCcCCCEEeCccccCcccCCcCccCCC
Q 043523 533 VISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEG----PIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLK 608 (650)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~----~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~ 608 (650)
.......++.++++++.+.+ ..+..+..+++|++|++++|+++...+..|+.++
T Consensus 244 ----------------------~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~ 301 (353)
T 2z80_A 244 ----------------------TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLT 301 (353)
T ss_dssp -------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ----------------------cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCC
Confidence 00134455666777776654 2445678889999999999999954444468899
Q ss_pred CCCeeeCCCCcCCccCC
Q 043523 609 QIESLDLSMNNLSGKIP 625 (650)
Q Consensus 609 ~L~~L~l~~n~i~~~~~ 625 (650)
+|++|++++|.+.+..|
T Consensus 302 ~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 302 SLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp TCCEEECCSSCBCCCHH
T ss_pred CCCEEEeeCCCccCcCC
Confidence 99999999999887644
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=1.2e-25 Score=218.01 Aligned_cols=269 Identities=18% Similarity=0.166 Sum_probs=186.5
Q ss_pred cEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEcc
Q 043523 319 SYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLG 398 (650)
Q Consensus 319 ~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 398 (650)
..++.+++.++.+|..+ .++++.+++++|.+.+..+..+..+++|+.|++++|.+.+..+..+.... +|++|+++
T Consensus 14 ~~~~c~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA--LLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCSSCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT--TCCEEECC
T ss_pred eEEEcCcCCcccCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCcc--CCCEEeCC
Confidence 45667777777776644 56778888888877777767777788888888888877755555554433 78888888
Q ss_pred CccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCccccee
Q 043523 399 RNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGH 478 (650)
Q Consensus 399 ~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 478 (650)
+|...+.++...|..+++|++|++++|++++..+..+..+++|++|++++|++....+..+..+++|++|++++|.++..
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence 88633355555578888888888888888877777788888888888888888876666777888888888888887765
Q ss_pred cCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccC
Q 043523 479 ISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKV 558 (650)
Q Consensus 479 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (650)
. ...+..+++|++|++++|.+....+. .+..
T Consensus 169 ~--~~~~~~l~~L~~L~l~~n~l~~~~~~-----------------------------------------------~~~~ 199 (285)
T 1ozn_A 169 P--ERAFRGLHSLDRLLLHQNRVAHVHPH-----------------------------------------------AFRD 199 (285)
T ss_dssp C--TTTTTTCTTCCEEECCSSCCCEECTT-----------------------------------------------TTTT
T ss_pred C--HHHhcCccccCEEECCCCcccccCHh-----------------------------------------------HccC
Confidence 4 44567778888888888876532221 1234
Q ss_pred CCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccC--CCCCCe
Q 043523 559 PNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLAS--LNFLSV 636 (650)
Q Consensus 559 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~--l~~L~~ 636 (650)
++.|++|++++|.+.++.+..+..+++|++|++++|++...-+.. .-...++.+..+.+.+....|+.+++ +..++.
T Consensus 200 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~ 278 (285)
T 1ozn_A 200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAA 278 (285)
T ss_dssp CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCG
T ss_pred cccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCCcChhhcCH
Confidence 667777888888777766667777888888888888776322210 11123445556667777667766654 455666
Q ss_pred EEccCC
Q 043523 637 LNLSYN 642 (650)
Q Consensus 637 L~l~~n 642 (650)
.++.+|
T Consensus 279 ~~l~~C 284 (285)
T 1ozn_A 279 NDLQGC 284 (285)
T ss_dssp GGSCCC
T ss_pred HHhccC
Confidence 666665
No 57
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=2.5e-27 Score=255.58 Aligned_cols=255 Identities=11% Similarity=-0.011 Sum_probs=132.9
Q ss_pred cCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCcc
Q 043523 339 MSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQ 418 (650)
Q Consensus 339 ~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 418 (650)
+++++.+.+.++ ....++..+..+++|+.|++++|.+.+.....+ ....++|++|+++ +.+.+......+..+++|+
T Consensus 269 ~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~-~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 269 PRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTL-IQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHH-HTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCC
T ss_pred cccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHH-HHhCcCCCEEecc-CccCHHHHHHHHHhCCCCC
Confidence 456666666553 222344455556666666666666443222111 1222366666666 3232222222234555666
Q ss_pred EEEcCC-----------Cccccccchh-cccCCCCCEEeCCCCccccccchhhhc-CCCCCeEEcc----Cccccee---
Q 043523 419 ILDLGG-----------NQLQGVVPKS-LANCNMLQVLDLKNNHISDNFPCWLGN-ASSLQVLVLQ----SNNFSGH--- 478 (650)
Q Consensus 419 ~L~ls~-----------~~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~~~L~~L~l~----~n~~~~~--- 478 (650)
+|++++ +.+++..... ...+++|++|+++.+.+++..+..+.. +++|++|+++ .|.+++.
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~ 425 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence 666662 2344322222 334666666666666665544444443 6666666664 3333321
Q ss_pred cCCCCCCCCCCCCCeeeCCCcc--cccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcc
Q 043523 479 ISCPRNNVSWPLLQIVDLASNK--FSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLL 556 (650)
Q Consensus 479 ~~~~~~~~~~~~L~~L~l~~n~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (650)
.++...+.++++|++|++++|. +++. .+. ...
T Consensus 426 ~~~~~~~~~~~~L~~L~L~~~~~~l~~~----~~~------------------------------------------~~~ 459 (592)
T 3ogk_B 426 NGVRSLLIGCKKLRRFAFYLRQGGLTDL----GLS------------------------------------------YIG 459 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCGGGCCHH----HHH------------------------------------------HHH
T ss_pred HHHHHHHHhCCCCCEEEEecCCCCccHH----HHH------------------------------------------HHH
Confidence 0001123345666666665432 1110 000 001
Q ss_pred cCCCcccEEeCCCCccccCC-CccccCCcCCCEEeCccccCccc-CCcCccCCCCCCeeeCCCCcCCccCCccc-cCCCC
Q 043523 557 KVPNIFTSIDFSSNNFEGPI-PEEMGRFKSLYALNMSHNALTGS-IPSSFGNLKQIESLDLSMNNLSGKIPAQL-ASLNF 633 (650)
Q Consensus 557 ~~~~~l~~L~l~~~~~~~~~-~~~~~~l~~L~~L~ls~n~i~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~l-~~l~~ 633 (650)
..+++|++|++++|.+++.. +..+..+++|++|+|++|.+++. .+..+..+++|++|++++|+++....+.+ +.++.
T Consensus 460 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~ 539 (592)
T 3ogk_B 460 QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPY 539 (592)
T ss_dssp HSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTT
T ss_pred HhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCC
Confidence 23667788888888776532 33456678888888888887653 23333567788888888888776544434 35676
Q ss_pred CCeEEccCC
Q 043523 634 LSVLNLSYN 642 (650)
Q Consensus 634 L~~L~l~~n 642 (650)
+....+..+
T Consensus 540 l~~~~~~~~ 548 (592)
T 3ogk_B 540 WNIELIPSR 548 (592)
T ss_dssp EEEEEECCC
T ss_pred cEEEEecCc
Confidence 666655544
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=5.3e-27 Score=230.26 Aligned_cols=254 Identities=20% Similarity=0.228 Sum_probs=190.5
Q ss_pred cCCccEEEccCCcccccccccccCCCcccEEECcCcccc-ccCChhhh-----hccccCccEEEccCccCCCcCCCccc-
Q 043523 339 MSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLS-GTIPACLI-----AQSETTLGVLNLGRNNLNGTLSDTIF- 411 (650)
Q Consensus 339 ~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~~~- 411 (650)
.++++.+++++|.+ .+|..+... |+.|++++|.+. ..++.... ....++|++|++++|.+.+.++...|
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 34455555555555 344433332 666777777663 23444332 11234889999999988877777644
Q ss_pred CCCCCccEEEcCCCccccccchhcccC-----CCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCC--
Q 043523 412 PRNCGLQILDLGGNQLQGVVPKSLANC-----NMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRN-- 484 (650)
Q Consensus 412 ~~l~~L~~L~ls~~~i~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-- 484 (650)
..+++|++|++++|++++. |..+..+ ++|++|++++|++.+..+..+..+++|++|++++|++.+..+.+..
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 8899999999999999866 7777776 8999999999999998878899999999999999997643211222
Q ss_pred CCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccE
Q 043523 485 NVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTS 564 (650)
Q Consensus 485 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 564 (650)
+..+++|++|++++|.+..... +.......++.|++
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~--------------------------------------------~~~~~~~~l~~L~~ 232 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSG--------------------------------------------VCSALAAARVQLQG 232 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHH--------------------------------------------HHHHHHHTTCCCSE
T ss_pred hccCCCCCEEECCCCcCcchHH--------------------------------------------HHHHHHhcCCCCCE
Confidence 3788999999999998762110 01111235688999
Q ss_pred EeCCCCccccCCC-ccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCc
Q 043523 565 IDFSSNNFEGPIP-EEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNN 643 (650)
Q Consensus 565 L~l~~~~~~~~~~-~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~ 643 (650)
|++++|.+.+..+ ..+..+++|++|++++|+++ .+|.++. ++|++|++++|++++. |. +..+++|+.|++++|+
T Consensus 233 L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 233 LDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp EECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCT
T ss_pred EECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCC
Confidence 9999999988664 56667899999999999999 6777766 8999999999999977 54 9999999999999999
Q ss_pred Ccc
Q 043523 644 LVG 646 (650)
Q Consensus 644 ~~~ 646 (650)
+++
T Consensus 308 l~~ 310 (312)
T 1wwl_A 308 FLD 310 (312)
T ss_dssp TTC
T ss_pred CCC
Confidence 986
No 59
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=4.8e-27 Score=253.43 Aligned_cols=252 Identities=11% Similarity=-0.030 Sum_probs=168.8
Q ss_pred CccEEecCCCcCCCCchhhhhccCCccEEEccCCccccccc-ccccCCCcccEEECcCccccccCChhhhhccccCccEE
Q 043523 317 NTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIP-ESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVL 395 (650)
Q Consensus 317 ~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 395 (650)
+++.++++.+....++.. +..+++|++|++++|.+.+... ..+..+++|+.|+++ +.+.+.....+.. ..++|++|
T Consensus 271 ~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~-~~~~L~~L 347 (592)
T 3ogk_B 271 KLCRLGLSYMGPNEMPIL-FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQ-YCKQLKRL 347 (592)
T ss_dssp TCCEEEETTCCTTTGGGG-GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHH-HCTTCCEE
T ss_pred cccccCccccchhHHHHH-HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHH-hCCCCCEE
Confidence 344444443332333332 3347788888888888655443 346789999999999 4444333332322 23489999
Q ss_pred EccC-----------ccCCCcCCCcccCCCCCccEEEcCCCccccccchhccc-CCCCCEEeCC----CCccccc-----
Q 043523 396 NLGR-----------NNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLAN-CNMLQVLDLK----NNHISDN----- 454 (650)
Q Consensus 396 ~l~~-----------~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~-l~~L~~L~Ls----~n~l~~~----- 454 (650)
++++ +.+++......+..+++|++|+++.+.+++..+..+.. +++|++|+++ .|.+++.
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~ 427 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG 427 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence 9994 34443323333456899999999888888777777765 9999999996 6677763
Q ss_pred cchhhhcCCCCCeEEccCcc--cceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCccccccee
Q 043523 455 FPCWLGNASSLQVLVLQSNN--FSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRY 532 (650)
Q Consensus 455 ~~~~~~~~~~L~~L~l~~n~--~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~ 532 (650)
.+..+.++++|++|+++.|. ++... .......+++|++|++++|.+++.....
T Consensus 428 ~~~~~~~~~~L~~L~L~~~~~~l~~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~------------------------ 482 (592)
T 3ogk_B 428 VRSLLIGCKKLRRFAFYLRQGGLTDLG-LSYIGQYSPNVRWMLLGYVGESDEGLME------------------------ 482 (592)
T ss_dssp HHHHHHHCTTCCEEEEECCGGGCCHHH-HHHHHHSCTTCCEEEECSCCSSHHHHHH------------------------
T ss_pred HHHHHHhCCCCCEEEEecCCCCccHHH-HHHHHHhCccceEeeccCCCCCHHHHHH------------------------
Confidence 34456789999999998655 44322 1222335789999999999875321111
Q ss_pred eccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccC-CCccccCCcCCCEEeCccccCcccCCcCc-cCCCCC
Q 043523 533 VISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGP-IPEEMGRFKSLYALNMSHNALTGSIPSSF-GNLKQI 610 (650)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~-~~~~~~~l~~L~~L~ls~n~i~~~~~~~~-~~l~~L 610 (650)
....+++|++|++++|.+++. .+..+..+++|++|++++|++++.....+ ..++.+
T Consensus 483 ----------------------~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l 540 (592)
T 3ogk_B 483 ----------------------FSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYW 540 (592)
T ss_dssp ----------------------HHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTE
T ss_pred ----------------------HHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCc
Confidence 113578999999999998644 23345678999999999999997654444 357777
Q ss_pred CeeeCCCC
Q 043523 611 ESLDLSMN 618 (650)
Q Consensus 611 ~~L~l~~n 618 (650)
.+..+..+
T Consensus 541 ~~~~~~~~ 548 (592)
T 3ogk_B 541 NIELIPSR 548 (592)
T ss_dssp EEEEECCC
T ss_pred EEEEecCc
Confidence 77766654
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=5.9e-24 Score=225.23 Aligned_cols=267 Identities=21% Similarity=0.213 Sum_probs=156.1
Q ss_pred ccceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCccc
Q 043523 274 NLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLV 353 (650)
Q Consensus 274 ~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~ 353 (650)
+++.|++++|.++.+|.... ++|+.|++++|.+... +..+++|++|++++|+++.++. .+++|++|++++|.+.
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~l-p~~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSL-PALPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLT 114 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCC-CCCCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCC
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCC-CCcCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCC
Confidence 35555555555555544332 5566666666655532 2245566666666666665554 3566666666666655
Q ss_pred ccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccch
Q 043523 354 GVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPK 433 (650)
Q Consensus 354 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~ 433 (650)
+... .+++|+.|++++|.++. +|.. .++|++|++++|.+. .++. ..++|+.|++++|.+++ +|
T Consensus 115 ~l~~----~l~~L~~L~L~~N~l~~-lp~~-----l~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~-l~- 177 (622)
T 3g06_A 115 HLPA----LPSGLCKLWIFGNQLTS-LPVL-----PPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLTS-LP- 177 (622)
T ss_dssp CCCC----CCTTCCEEECCSSCCSC-CCCC-----CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CC-
T ss_pred CCCC----CCCCcCEEECCCCCCCc-CCCC-----CCCCCEEECcCCcCC-CcCC----ccCCCCEEECCCCCCCC-Cc-
Confidence 4322 34566666666666652 3322 136777777777665 3332 23467777777777763 33
Q ss_pred hcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhH
Q 043523 434 SLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTM 513 (650)
Q Consensus 434 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l 513 (650)
..+++|+.|++++|++.++ +. .+++|++|++++|.++... . .+++|+.|++++|.++.. +
T Consensus 178 --~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l~---~---~~~~L~~L~Ls~N~L~~l-p------- 237 (622)
T 3g06_A 178 --MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTSLP---A---LPSGLKELIVSGNRLTSL-P------- 237 (622)
T ss_dssp --CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSCC---C---CCTTCCEEECCSSCCSCC-C-------
T ss_pred --ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCcccccC---C---CCCCCCEEEccCCccCcC-C-------
Confidence 3456777777777777652 22 2467777777777765322 1 235677777777765420 0
Q ss_pred HhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCcc
Q 043523 514 EEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSH 593 (650)
Q Consensus 514 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~ 593 (650)
..+++|+.|++++|.++.+.. .+++|+.|++++
T Consensus 238 -------------------------------------------~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~ 270 (622)
T 3g06_A 238 -------------------------------------------VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYR 270 (622)
T ss_dssp -------------------------------------------CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCS
T ss_pred -------------------------------------------CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCC
Confidence 134566667777776664333 456677777777
Q ss_pred ccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCC
Q 043523 594 NALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASL 631 (650)
Q Consensus 594 n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l 631 (650)
|+++ .+|..+..+++|+.|++++|.+++..|..+..+
T Consensus 271 N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 271 NQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp SCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred CCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 7777 556666777777777777777766666555544
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.4e-26 Score=227.79 Aligned_cols=80 Identities=18% Similarity=0.215 Sum_probs=54.3
Q ss_pred CCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCC-ccCCccccCCCCCCeE
Q 043523 559 PNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS-GKIPAQLASLNFLSVL 637 (650)
Q Consensus 559 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L 637 (650)
+++|++|++++|.+.++.+ .+..+++|+.|++++|+++ .+|..+..+++|++|++++|.+. +..+..+..+++|+.+
T Consensus 190 l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l 267 (317)
T 3o53_A 190 FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267 (317)
T ss_dssp CTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHH
T ss_pred cccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEE
Confidence 4555566666666654433 3666777777777777777 45666777777777777777777 5566677777777777
Q ss_pred Ecc
Q 043523 638 NLS 640 (650)
Q Consensus 638 ~l~ 640 (650)
+++
T Consensus 268 ~l~ 270 (317)
T 3o53_A 268 AKQ 270 (317)
T ss_dssp HHH
T ss_pred ECC
Confidence 766
No 62
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=6.7e-25 Score=216.31 Aligned_cols=225 Identities=20% Similarity=0.227 Sum_probs=149.9
Q ss_pred CcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCE
Q 043523 364 IYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQV 443 (650)
Q Consensus 364 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~ 443 (650)
.+++.|++++|.+. .+|..+... ++|++|++++|.+. .++.. +..+++|++|++++|.++ .+|..+..+++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l--~~L~~L~L~~n~l~-~lp~~-~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRL--SHLQHMTIDAAGLM-ELPDT-MQQFAGLETLTLARNPLR-ALPASIASLNRLRE 154 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGG--TTCSEEEEESSCCC-CCCSC-GGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCE
T ss_pred cceeEEEccCCCch-hcChhhhhC--CCCCEEECCCCCcc-chhHH-HhccCCCCEEECCCCccc-cCcHHHhcCcCCCE
Confidence 34555555555554 444433332 25555555555555 44433 555666666666666665 45555666666666
Q ss_pred EeCCCCccccccchhhh---------cCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHH
Q 043523 444 LDLKNNHISDNFPCWLG---------NASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTME 514 (650)
Q Consensus 444 L~Ls~n~l~~~~~~~~~---------~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~ 514 (650)
|++++|.+.+..|..+. ++++|++|++++|.++ .++..+.++++|++|++++|.+.+. +.
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~---~lp~~l~~l~~L~~L~L~~N~l~~l-~~------- 223 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR---SLPASIANLQNLKSLKIRNSPLSAL-GP------- 223 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC---CCCGGGGGCTTCCEEEEESSCCCCC-CG-------
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC---cchHhhcCCCCCCEEEccCCCCCcC-ch-------
Confidence 66666555554554443 3666666666666665 2244566666666666666665421 11
Q ss_pred hhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccc
Q 043523 515 EMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHN 594 (650)
Q Consensus 515 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n 594 (650)
.+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 224 ----------------------------------------~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n 263 (328)
T 4fcg_A 224 ----------------------------------------AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC 263 (328)
T ss_dssp ----------------------------------------GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTC
T ss_pred ----------------------------------------hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCC
Confidence 1134567777777777777777788888899999999999
Q ss_pred cCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCcCc
Q 043523 595 ALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV 645 (650)
Q Consensus 595 ~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~ 645 (650)
.+.+..|.+++.+++|++|++++|.+.+.+|+.+.++++|+.+++..+.+.
T Consensus 264 ~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 264 SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 888888888999999999999999998889999999999999998877654
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=6.9e-24 Score=219.80 Aligned_cols=197 Identities=20% Similarity=0.193 Sum_probs=121.4
Q ss_pred cEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCcccc
Q 043523 298 RLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLS 377 (650)
Q Consensus 298 ~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 377 (650)
..++..+..+........+++++|++++|+++.++...+..+++|+.|++++|.+.+..+..+.++++|+.|++++|.+.
T Consensus 57 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 136 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136 (452)
T ss_dssp CEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred cEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC
Confidence 44555555555544445567888888888888776666677999999999999999888888989998999999888877
Q ss_pred ccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCC-ccccccchhcccCCCCCEEeCCCCccccccc
Q 043523 378 GTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGN-QLQGVVPKSLANCNMLQVLDLKNNHISDNFP 456 (650)
Q Consensus 378 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 456 (650)
...+..+... ++|++|++++|.+. .++...|..+++|++|++++| .+....+..|..+++|++|++++|++.+. +
T Consensus 137 ~~~~~~~~~l--~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~ 212 (452)
T 3zyi_A 137 VIPSGAFEYL--SKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P 212 (452)
T ss_dssp BCCTTTSSSC--TTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C
T ss_pred ccChhhhccc--CCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c
Confidence 3333323222 25666666666555 444444555666666666653 33333334455555666666666655542 2
Q ss_pred hhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCccc
Q 043523 457 CWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKF 501 (650)
Q Consensus 457 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 501 (650)
.+..+++|++|++++|.+++.. +..+.++++|++|++++|.+
T Consensus 213 -~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~n~l 254 (452)
T 3zyi_A 213 -NLTPLVGLEELEMSGNHFPEIR--PGSFHGLSSLKKLWVMNSQV 254 (452)
T ss_dssp -CCTTCTTCCEEECTTSCCSEEC--GGGGTTCTTCCEEECTTSCC
T ss_pred -cccccccccEEECcCCcCcccC--cccccCccCCCEEEeCCCcC
Confidence 2445555555555555555443 33444444455555444443
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=6.9e-24 Score=218.95 Aligned_cols=198 Identities=20% Similarity=0.192 Sum_probs=136.4
Q ss_pred cEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCcccc
Q 043523 298 RLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLS 377 (650)
Q Consensus 298 ~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 377 (650)
..++..+..+........++++.|++++|+++.++...+..+++|+.|++++|.+....+..+.++++|+.|++++|.+.
T Consensus 46 ~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~ 125 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125 (440)
T ss_dssp CEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS
T ss_pred CEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC
Confidence 34555555555555555567888888888888777666777899999999999999888888999999999999999887
Q ss_pred ccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCC-ccccccchhcccCCCCCEEeCCCCccccccc
Q 043523 378 GTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGN-QLQGVVPKSLANCNMLQVLDLKNNHISDNFP 456 (650)
Q Consensus 378 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 456 (650)
...+..+... ++|++|++++|.+. .++...|..+++|++|++++| .+....+..|..+++|++|++++|++..+ |
T Consensus 126 ~~~~~~~~~l--~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~ 201 (440)
T 3zyj_A 126 TIPNGAFVYL--SKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P 201 (440)
T ss_dssp SCCTTTSCSC--SSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C
T ss_pred eeCHhHhhcc--ccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c
Confidence 4333333332 36777777777766 455555777777777777774 34434445667777777777777777653 2
Q ss_pred hhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccc
Q 043523 457 CWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFS 502 (650)
Q Consensus 457 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 502 (650)
.+..+++|++|++++|+++... +..+.++++|++|++++|.+.
T Consensus 202 -~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~n~l~ 244 (440)
T 3zyj_A 202 -NLTPLIKLDELDLSGNHLSAIR--PGSFQGLMHLQKLWMIQSQIQ 244 (440)
T ss_dssp -CCTTCSSCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTCCCC
T ss_pred -ccCCCcccCEEECCCCccCccC--hhhhccCccCCEEECCCCcee
Confidence 3566777777777777766554 455666666666666666554
No 65
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=3.6e-24 Score=211.08 Aligned_cols=228 Identities=16% Similarity=0.160 Sum_probs=137.2
Q ss_pred CCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEE
Q 043523 316 TNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVL 395 (650)
Q Consensus 316 ~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 395 (650)
.+++.|++++|+++.+|..++. +++|+++++++|.+. .+|..+..+++|+.|++++|.+. .+|..+.... +|++|
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~-l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~--~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLN--RLREL 155 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGG-GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCT--TCCEE
T ss_pred cceeEEEccCCCchhcChhhhh-CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCc--CCCEE
Confidence 3455555566666656655554 666666666666666 55666666666666666666665 4555444332 56666
Q ss_pred EccCccCCCcCCCcc--------cCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCe
Q 043523 396 NLGRNNLNGTLSDTI--------FPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQV 467 (650)
Q Consensus 396 ~l~~~~~~~~~~~~~--------~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~ 467 (650)
++++|++.+.++... |..+++|++|++++|+++ .+|..+..+++|++|++++|++.+ .+..+..+++|++
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEE 233 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCE
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCE
Confidence 666655554544431 222444555555555544 344444455555555555555444 2333444455555
Q ss_pred EEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEe
Q 043523 468 LVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVT 547 (650)
Q Consensus 468 L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 547 (650)
|++++|.+.+.. +..+.
T Consensus 234 L~Ls~n~~~~~~--p~~~~------------------------------------------------------------- 250 (328)
T 4fcg_A 234 LDLRGCTALRNY--PPIFG------------------------------------------------------------- 250 (328)
T ss_dssp EECTTCTTCCBC--CCCTT-------------------------------------------------------------
T ss_pred EECcCCcchhhh--HHHhc-------------------------------------------------------------
Confidence 555554443322 23333
Q ss_pred eccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCcc
Q 043523 548 VKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGK 623 (650)
Q Consensus 548 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~ 623 (650)
.+++|++|++++|.+.+..+..+..+++|++|+|++|++.+.+|.+++++++|+.+++..+.+...
T Consensus 251 ----------~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 251 ----------GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316 (328)
T ss_dssp ----------CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC-
T ss_pred ----------CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHH
Confidence 345566666666666667777788899999999999999989999999999999999987766543
No 66
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=1.2e-26 Score=250.52 Aligned_cols=85 Identities=13% Similarity=0.024 Sum_probs=44.2
Q ss_pred CCcccEEeCCCCccccCCCccc-cCCcCCCEEeCccccCcccCCc-CccCCCCCCeeeCCCCcCCccCCccc-cCCCCCC
Q 043523 559 PNIFTSIDFSSNNFEGPIPEEM-GRFKSLYALNMSHNALTGSIPS-SFGNLKQIESLDLSMNNLSGKIPAQL-ASLNFLS 635 (650)
Q Consensus 559 ~~~l~~L~l~~~~~~~~~~~~~-~~l~~L~~L~ls~n~i~~~~~~-~~~~l~~L~~L~l~~n~i~~~~~~~l-~~l~~L~ 635 (650)
+++|+.|++++|.+++.....+ ..+++|++|+|++|.+++.... ....+++|++|++++|.++......+ ..+++|+
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~ 534 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLN 534 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEE
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCE
Confidence 4556666666666544333333 4456666666666666543222 23345666666666666643333333 4455555
Q ss_pred eEEccCCc
Q 043523 636 VLNLSYNN 643 (650)
Q Consensus 636 ~L~l~~n~ 643 (650)
...+..+.
T Consensus 535 i~~~~~~~ 542 (594)
T 2p1m_B 535 VEVIDERG 542 (594)
T ss_dssp EEEECSSS
T ss_pred EEEecCCC
Confidence 55555443
No 67
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=2.3e-26 Score=248.31 Aligned_cols=137 Identities=19% Similarity=0.079 Sum_probs=67.8
Q ss_pred CCCCCCEEEccCCcCCCCCchhhhcCCCCccEEEccCC-cCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCC
Q 043523 163 LLPNLETLWLSNNQFENQLPEISNVSSSVLFDLDLSGN-RLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIP 241 (650)
Q Consensus 163 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~ 241 (650)
.+++|++|++++|.+...........+++|++|++++| .+.+.....++..+++|+.|++++|.++.... ..++
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~-----~~l~ 177 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSG-----HWLS 177 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCG-----GGGG
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcch-----HHHH
Confidence 35566666666655443222222223556666666666 23322122333567777777777776553221 1122
Q ss_pred C-CCCCCCCcEEEccCCcCCCCCChhHHhh--cCcccceeeeccc-cccCCcCcc-cCCcccEEEeccC
Q 043523 242 I-LKNQSQLSGLDISNNQIPGEIPNWIWEV--GNGNLNFLNLSHN-LLVSLQEPY-SISSIRLLDLHSN 305 (650)
Q Consensus 242 ~-l~~~~~L~~L~l~~~~i~~~~~~~~~~~--~~~~L~~L~l~~~-~l~~l~~~~-~l~~L~~L~l~~~ 305 (650)
. ...+++|++|+++++. .......+... ..++|++|++++| .+..++... .+++|+.+++..+
T Consensus 178 ~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 178 HFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp GSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred HHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 2 3356677888877775 21112222221 2345777777766 333332222 2566666665544
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.4e-23 Score=202.32 Aligned_cols=208 Identities=22% Similarity=0.197 Sum_probs=161.8
Q ss_pred CccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEc
Q 043523 391 TLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVL 470 (650)
Q Consensus 391 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 470 (650)
++++|++++|.+. .++...|..+++|++|++++|++++..+..|..+++|++|++++|++....+..|.++++|++|++
T Consensus 29 ~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 6788888888877 444445788888888888888888667777888888888888888888877777888888888888
Q ss_pred cCcccceecCCCCCCCCCCCCCeeeCCCcccccc-cChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeec
Q 043523 471 QSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGR-LSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVK 549 (650)
Q Consensus 471 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 549 (650)
++|.+.... ...+..+++|++|++++|.+... .+.
T Consensus 108 ~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~l~~------------------------------------------ 143 (276)
T 2z62_A 108 VETNLASLE--NFPIGHLKTLKELNVAHNLIQSFKLPE------------------------------------------ 143 (276)
T ss_dssp TTSCCCCST--TCCCTTCTTCCEEECCSSCCCCCCCCG------------------------------------------
T ss_pred CCCCccccC--chhcccCCCCCEEECcCCccceecCch------------------------------------------
Confidence 888887654 34577788888888888876532 111
Q ss_pred cchhhcccCCCcccEEeCCCCccccCCCccccCCcCCC----EEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCC
Q 043523 550 GVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLY----ALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP 625 (650)
Q Consensus 550 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~----~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~ 625 (650)
.+..++.|++|++++|.+.++.+..+..+++|+ .|++++|++++..+..+. ..+|++|++++|.+++.++
T Consensus 144 -----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~ 217 (276)
T 2z62_A 144 -----YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPD 217 (276)
T ss_dssp -----GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCT
T ss_pred -----hhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCH
Confidence 123567888888888888877777777777777 889999999866665554 4589999999999988888
Q ss_pred ccccCCCCCCeEEccCCcCcccCC
Q 043523 626 AQLASLNFLSVLNLSYNNLVGKIP 649 (650)
Q Consensus 626 ~~l~~l~~L~~L~l~~n~~~~~~p 649 (650)
..|..+++|+.|++++|++.+..|
T Consensus 218 ~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 218 GIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp TTTTTCCSCCEEECCSSCBCCCTT
T ss_pred hHhcccccccEEEccCCcccccCC
Confidence 888899999999999998887655
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=1.5e-24 Score=213.23 Aligned_cols=219 Identities=23% Similarity=0.198 Sum_probs=140.8
Q ss_pred CCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCC
Q 043523 362 KGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNML 441 (650)
Q Consensus 362 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L 441 (650)
.+++|+.|++++|.+.+..+..+.... +|++|++++|.+.+..+ |..+++|++|++++|++++.. ..++|
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~l~-----~~~~L 101 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFT--KLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL-----VGPSI 101 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCT--TCCEEECTTSCCEEEEE---ETTCTTCCEEECCSSEEEEEE-----ECTTC
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCC--cCCEEECCCCcCCcchh---hhhcCCCCEEECcCCcccccc-----CCCCc
Confidence 334445555555544433333332222 55555555555442222 556666666666666665322 23666
Q ss_pred CEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhc
Q 043523 442 QVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAET 521 (650)
Q Consensus 442 ~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~ 521 (650)
++|++++|++....+. .+++|++|++++|+++... +..+..+++|++|++++|.+....+..
T Consensus 102 ~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~------------- 163 (317)
T 3o53_A 102 ETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLR--DLDEGCRSRVQYLDLKLNEIDTVNFAE------------- 163 (317)
T ss_dssp CEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGG--GBCTGGGSSEEEEECTTSCCCEEEGGG-------------
T ss_pred CEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCcc--chhhhccCCCCEEECCCCCCCcccHHH-------------
Confidence 6777777766664433 2566677777777666543 334555666777777777654321111
Q ss_pred ccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCC
Q 043523 522 KSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIP 601 (650)
Q Consensus 522 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~ 601 (650)
....++.|++|++++|.+.+.. ....+++|++|++++|++++. +
T Consensus 164 ---------------------------------~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l-~ 207 (317)
T 3o53_A 164 ---------------------------------LAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFM-G 207 (317)
T ss_dssp ---------------------------------GGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEE-C
T ss_pred ---------------------------------HhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcc-h
Confidence 1123567788888888877553 233589999999999999954 4
Q ss_pred cCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCcCc
Q 043523 602 SSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV 645 (650)
Q Consensus 602 ~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~ 645 (650)
..+..+++|++|++++|.++. +|..+..+++|+.|++++|++.
T Consensus 208 ~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 208 PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCB
T ss_pred hhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCcc
Confidence 558999999999999999995 5667999999999999999998
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=6.1e-23 Score=196.86 Aligned_cols=201 Identities=23% Similarity=0.273 Sum_probs=113.0
Q ss_pred ccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEe
Q 043523 366 FQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLD 445 (650)
Q Consensus 366 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~ 445 (650)
.+.++++++.++ .+|..+. +++++|++++|.+. .++...|..+++|++|++++|.++...+..|..+++|++|+
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~----~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP----ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC----TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCEEEccCCCCC-ccCCCCC----CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 455666666555 3333222 25566666666555 33333355556666666666655544444455556666666
Q ss_pred CCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCc
Q 043523 446 LKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGS 525 (650)
Q Consensus 446 Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~ 525 (650)
+++|++..+.+..|..+++|++|++++|.++... +..+..+++
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~----------------------------------- 134 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLP--PRVFDSLTK----------------------------------- 134 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCC--TTTTTTCTT-----------------------------------
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeC--HHHhCcCcC-----------------------------------
Confidence 6666655544455555555555555555554332 233344444
Q ss_pred ccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCcc
Q 043523 526 ELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFG 605 (650)
Q Consensus 526 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~ 605 (650)
|++|++++|.+.++.+..+..+++|++|++++|++++..+.+|.
T Consensus 135 ------------------------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 178 (270)
T 2o6q_A 135 ------------------------------------LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFD 178 (270)
T ss_dssp ------------------------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred ------------------------------------CCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhc
Confidence 45555555555544444556666666666666666655555566
Q ss_pred CCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCcCc
Q 043523 606 NLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV 645 (650)
Q Consensus 606 ~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~ 645 (650)
.+++|++|++++|.+++.++..|..+++|+.|++++|++.
T Consensus 179 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 179 KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 6666666666666666655556666666666666666654
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=5.3e-25 Score=216.02 Aligned_cols=248 Identities=21% Similarity=0.209 Sum_probs=128.5
Q ss_pred CCcccEEEeccCcCCCCCCC-CCCCccEEecCCCcCC--CCchhhh------hccCCccEEEccCCcccccccccc--cC
Q 043523 294 ISSIRLLDLHSNQLRGNIPH-MSTNTSYVDYSNNHFT--FIPADIG------NFMSETEYFFAANNSLVGVIPESV--CK 362 (650)
Q Consensus 294 l~~L~~L~l~~~~l~~~~~~-~~~~L~~L~l~~~~i~--~~~~~~~------~~~~~l~~l~l~~~~~~~~~~~~l--~~ 362 (650)
.++|+.+++++|.+ ..+. ....++.+++++|+++ .++...+ ..+++++++++++|.+.+..|..+ ..
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CCCceeEeeccccc--ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 34555666666665 2222 2233566666666654 2333322 125566666666666665555544 55
Q ss_pred CCcccEEECcCccccccCChhhhhcc---ccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccc--cchhc--
Q 043523 363 GIYFQVLDLSNNNLSGTIPACLIAQS---ETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGV--VPKSL-- 435 (650)
Q Consensus 363 ~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~--~~~~~-- 435 (650)
+++|+.|++++|.+.+. |..+.... .++|++|++++|++. .++...|..+++|++|++++|++.+. .+..+
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCC-CCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCc-cchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 55666666666665543 43333220 125555555555555 23322355555555555555554432 12222
Q ss_pred ccCCCCCEEeCCCCcccc---ccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHh
Q 043523 436 ANCNMLQVLDLKNNHISD---NFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLT 512 (650)
Q Consensus 436 ~~l~~L~~L~Ls~n~l~~---~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 512 (650)
..+++|++|++++|++.. .....+..+++|++|++++|++.+... ...+..
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~------------------------- 251 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG-APSCDW------------------------- 251 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC-CSCCCC-------------------------
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc-hhhhhh-------------------------
Confidence 455555555555555552 111223344555555555555543210 012222
Q ss_pred HHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCc
Q 043523 513 MEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMS 592 (650)
Q Consensus 513 l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls 592 (650)
++.|++|++++|.++. .+..+. ++|++|+++
T Consensus 252 ----------------------------------------------l~~L~~L~Ls~N~l~~-ip~~~~--~~L~~L~Ls 282 (312)
T 1wwl_A 252 ----------------------------------------------PSQLNSLNLSFTGLKQ-VPKGLP--AKLSVLDLS 282 (312)
T ss_dssp ----------------------------------------------CTTCCEEECTTSCCSS-CCSSCC--SEEEEEECC
T ss_pred ----------------------------------------------cCCCCEEECCCCccCh-hhhhcc--CCceEEECC
Confidence 3455555566665552 233333 678888888
Q ss_pred cccCcccCCcCccCCCCCCeeeCCCCcCCc
Q 043523 593 HNALTGSIPSSFGNLKQIESLDLSMNNLSG 622 (650)
Q Consensus 593 ~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~ 622 (650)
+|++++. |. +..+++|++|++++|++++
T Consensus 283 ~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 283 YNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 8888754 54 7777888888888887764
No 72
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=8.9e-22 Score=208.56 Aligned_cols=264 Identities=24% Similarity=0.267 Sum_probs=139.1
Q ss_pred CCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEcc
Q 043523 22 TLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFS 101 (650)
Q Consensus 22 ~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~ 101 (650)
+++.|+++++.++.. +..+. ++|++|++++|.++ .+|. .+++|++|++++|+++ .+|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~~l-p~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLTTL-PDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCSCC-CSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcCcc-ChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 577788888877533 23333 67788888887777 4444 4677777777777776 4444 56777777777
Q ss_pred CCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCC
Q 043523 102 SNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQL 181 (650)
Q Consensus 102 ~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 181 (650)
+|.+..++. .+++|++|++++|.++. ++. .+++|++|++++|.+... +. .+++|+.|+++
T Consensus 110 ~N~l~~l~~---~l~~L~~L~L~~N~l~~-lp~----~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~-------- 169 (622)
T 3g06_A 110 SNPLTHLPA---LPSGLCKLWIFGNQLTS-LPV----LPPGLQELSVSDNQLASL-PA---LPSELCKLWAY-------- 169 (622)
T ss_dssp SCCCCCCCC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECC--------
T ss_pred CCcCCCCCC---CCCCcCEEECCCCCCCc-CCC----CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECC--------
Confidence 777765544 44667777777776652 322 124555555555554422 11 12344444444
Q ss_pred chhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccCCcCCC
Q 043523 182 PEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPG 261 (650)
Q Consensus 182 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~i~~ 261 (650)
+|.+. .+| ..+++|+.|++++|.++.+.. ..++|+.|++++|.+.
T Consensus 170 -----------------~N~l~-~l~----~~~~~L~~L~Ls~N~l~~l~~------------~~~~L~~L~L~~N~l~- 214 (622)
T 3g06_A 170 -----------------NNQLT-SLP----MLPSGLQELSVSDNQLASLPT------------LPSELYKLWAYNNRLT- 214 (622)
T ss_dssp -----------------SSCCS-CCC----CCCTTCCEEECCSSCCSCCCC------------CCTTCCEEECCSSCCS-
T ss_pred -----------------CCCCC-CCc----ccCCCCcEEECCCCCCCCCCC------------ccchhhEEECcCCccc-
Confidence 44443 233 223445555555554432110 1134444444444443
Q ss_pred CCChhHHhhcCcccceeeeccccccCCcCcccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCC
Q 043523 262 EIPNWIWEVGNGNLNFLNLSHNLLVSLQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSE 341 (650)
Q Consensus 262 ~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~ 341 (650)
.+|.. .++|+.|++++|.++.++ ..+++|+.|++++|+++.+|. .+++
T Consensus 215 ~l~~~-----~~~L~~L~Ls~N~L~~lp-----------------------~~l~~L~~L~Ls~N~L~~lp~----~~~~ 262 (622)
T 3g06_A 215 SLPAL-----PSGLKELIVSGNRLTSLP-----------------------VLPSELKELMVSGNRLTSLPM----LPSG 262 (622)
T ss_dssp SCCCC-----CTTCCEEECCSSCCSCCC-----------------------CCCTTCCEEECCSSCCSCCCC----CCTT
T ss_pred ccCCC-----CCCCCEEEccCCccCcCC-----------------------CCCCcCcEEECCCCCCCcCCc----cccc
Confidence 22211 123444444444444333 223344444444444444443 2455
Q ss_pred ccEEEccCCcccccccccccCCCcccEEECcCccccccCChhh
Q 043523 342 TEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACL 384 (650)
Q Consensus 342 l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 384 (650)
|+.|++++|.+. .+|..+..+++|+.|++++|.+.+..+..+
T Consensus 263 L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 263 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp CCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred CcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHH
Confidence 556666666555 345556666666777777766665555443
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=5.6e-24 Score=221.31 Aligned_cols=236 Identities=21% Similarity=0.206 Sum_probs=140.7
Q ss_pred CCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccE
Q 043523 315 STNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGV 394 (650)
Q Consensus 315 ~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 394 (650)
++++++|++++|.++.++...+..+++|+.|++++|.+.+..| +..+++|+.|++++|.+.+..+. ++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~-------~~L~~ 103 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG-------PSIET 103 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC-------TTCCE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC-------CCcCE
Confidence 3466677777776666655555556666666666666665544 56666666666666666532211 26666
Q ss_pred EEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhh-cCCCCCeEEccCc
Q 043523 395 LNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLG-NASSLQVLVLQSN 473 (650)
Q Consensus 395 L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~L~~L~l~~n 473 (650)
|++++|.+.+..+. .+++|+.|++++|.+++..+..+..+++|++|+|++|.+.+..+..+. .+++|++|++++|
T Consensus 104 L~L~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 104 LHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp EECCSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EECcCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 66666666533222 235566666666666655555566666666666666666665555554 4666666666666
Q ss_pred ccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchh
Q 043523 474 NFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVET 553 (650)
Q Consensus 474 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 553 (650)
.+++.. ....++
T Consensus 180 ~l~~~~----~~~~l~---------------------------------------------------------------- 191 (487)
T 3oja_A 180 FIYDVK----GQVVFA---------------------------------------------------------------- 191 (487)
T ss_dssp CCCEEE----CCCCCT----------------------------------------------------------------
T ss_pred cccccc----ccccCC----------------------------------------------------------------
Confidence 655432 111234
Q ss_pred hcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCC-ccCCccccCCC
Q 043523 554 MLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS-GKIPAQLASLN 632 (650)
Q Consensus 554 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~-~~~~~~l~~l~ 632 (650)
.|+.|++++|.++++++. +..+++|+.|++++|.+++ +|.++..+++|+.|++++|.+. +.+|..+..++
T Consensus 192 -------~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~ 262 (487)
T 3oja_A 192 -------KLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262 (487)
T ss_dssp -------TCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCH
T ss_pred -------CCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCC
Confidence 445555555555544333 5666777777777777773 5566677777777777777776 44556666666
Q ss_pred CCCeEEcc
Q 043523 633 FLSVLNLS 640 (650)
Q Consensus 633 ~L~~L~l~ 640 (650)
.|+.++++
T Consensus 263 ~L~~l~~~ 270 (487)
T 3oja_A 263 RVQTVAKQ 270 (487)
T ss_dssp HHHHHHHH
T ss_pred CCcEEecc
Confidence 66666664
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=3.8e-23 Score=215.00 Aligned_cols=216 Identities=23% Similarity=0.190 Sum_probs=147.7
Q ss_pred cccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEE
Q 043523 365 YFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVL 444 (650)
Q Consensus 365 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L 444 (650)
+|+.|++++|.+.+..+..+.... +|++|++++|.+.+..+ |..+++|++|++++|.+++.. ..++|++|
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L 104 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFT--KLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCT--TCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred CccEEEeeCCcCCCCCHHHHhCCC--CCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence 555666666655544444443322 56666666666553332 666677777777777766432 22677777
Q ss_pred eCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccC
Q 043523 445 DLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSG 524 (650)
Q Consensus 445 ~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~ 524 (650)
++++|.+.+..+. .+++|++|++++|.+++.. +..+.++++|+.|++++|.+++..+..+
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~l--------------- 164 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLR--DLDEGCRSRVQYLDLKLNEIDTVNFAEL--------------- 164 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGG--GBCGGGGSSEEEEECTTSCCCEEEGGGG---------------
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCC--chhhcCCCCCCEEECCCCCCCCcChHHH---------------
Confidence 7777777764443 3567777777777776543 4455666777777777776654322211
Q ss_pred cccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCc
Q 043523 525 SELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSF 604 (650)
Q Consensus 525 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~ 604 (650)
...++.|+.|++++|.+++..+ ...+++|+.|+|++|.+++.. ..+
T Consensus 165 -------------------------------~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~ 210 (487)
T 3oja_A 165 -------------------------------AASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMG-PEF 210 (487)
T ss_dssp -------------------------------GGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEEC-GGG
T ss_pred -------------------------------hhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCC-HhH
Confidence 1245778888888888876633 445899999999999999654 458
Q ss_pred cCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCcCc
Q 043523 605 GNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV 645 (650)
Q Consensus 605 ~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~ 645 (650)
..+++|+.|++++|.+++ +|..+..+++|+.|++++|++.
T Consensus 211 ~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 211 QSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp GGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred cCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 999999999999999996 5667999999999999999998
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=5.3e-22 Score=191.27 Aligned_cols=214 Identities=22% Similarity=0.206 Sum_probs=139.3
Q ss_pred CCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCC
Q 043523 6 ECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPI 85 (650)
Q Consensus 6 ~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~ 85 (650)
+.+++ ..|..+. ++|++|++++|.++......|.++++|++|++++|.+.+..+..+.++++|++|++++|.+++..
T Consensus 16 ~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (276)
T 2z62_A 16 ELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92 (276)
T ss_dssp TSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC
Confidence 33444 3444443 46888888888887666667888888888888888887666667888888888888888888777
Q ss_pred CcCccCCCCCcEEEccCCcccccCC-ccccCCCcCEEeCCCCcCccc-CChHHHhccccCCeEEccCCcCCCCcchhccC
Q 043523 86 PPSMANLTQLFHMDFSSNHFSGHIP-SLHKSRNLKYLDLSFNNLSGG-ISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFL 163 (650)
Q Consensus 86 ~~~l~~l~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 163 (650)
+..|.++++|++|++++|.+....+ .+..+++|++|++++|.+++. ++.. +.++++|++|++++|.+....+..+..
T Consensus 93 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 171 (276)
T 2z62_A 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRV 171 (276)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred hhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCCCCCcCCHHHhhh
Confidence 7788888888888888888876655 566778888888888877643 2444 677777888888877777655555555
Q ss_pred CCCCC----EEEccCCcCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCc
Q 043523 164 LPNLE----TLWLSNNQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNK 226 (650)
Q Consensus 164 l~~L~----~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~ 226 (650)
+++++ .+++++|.+....+... ...+|+.|++++|.+. .+|...|..+++|+.|++++|+
T Consensus 172 l~~L~~l~l~L~ls~n~l~~~~~~~~--~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 172 LHQMPLLNLSLDLSLNPMNFIQPGAF--KEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp HHTCTTCCEEEECCSSCCCEECTTSS--CSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSC
T ss_pred hhhccccceeeecCCCcccccCcccc--CCCcccEEECCCCcee-ecCHhHhcccccccEEEccCCc
Confidence 55554 66666666553222111 1124555555555444 3333333334444444444433
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=1.2e-22 Score=199.21 Aligned_cols=235 Identities=20% Similarity=0.179 Sum_probs=179.5
Q ss_pred CcccEEECcCcccccc-CChhhhhccccCccEEEccCccCCCcCCCccc-CCCCCccEEEcCCCccccccc----hhccc
Q 043523 364 IYFQVLDLSNNNLSGT-IPACLIAQSETTLGVLNLGRNNLNGTLSDTIF-PRNCGLQILDLGGNQLQGVVP----KSLAN 437 (650)
Q Consensus 364 ~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~ls~~~i~~~~~----~~~~~ 437 (650)
..++.+.+.++.+... +.........++|++|++++|.+.+..+...+ ..+++|++|++++|.+.+..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3466677777665432 11112222234799999999999877776644 889999999999999986544 44567
Q ss_pred CCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecC--CCCCCCCCCCCCeeeCCCcccccccChHHHHhHHh
Q 043523 438 CNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHIS--CPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEE 515 (650)
Q Consensus 438 l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~ 515 (650)
+++|++|++++|++....+..+..+++|++|++++|++.+..+ ....+..+++|++|++++|.++.....
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-------- 215 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGV-------- 215 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHH--------
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHH--------
Confidence 9999999999999998888889999999999999999764321 123346789999999999987521110
Q ss_pred hHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCC---cCCCEEeCc
Q 043523 516 MMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRF---KSLYALNMS 592 (650)
Q Consensus 516 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l---~~L~~L~ls 592 (650)
.......++.|++|++++|.+.+..+..+..+ ++|++|+++
T Consensus 216 ------------------------------------~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls 259 (310)
T 4glp_A 216 ------------------------------------CAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLS 259 (310)
T ss_dssp ------------------------------------HHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECC
T ss_pred ------------------------------------HHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECC
Confidence 00011356889999999999998877667766 699999999
Q ss_pred cccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCcCccc
Q 043523 593 HNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVGK 647 (650)
Q Consensus 593 ~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~~ 647 (650)
+|+++ .+|.++. ++|++|++++|++++. | .+..+++|+.|++++|+++++
T Consensus 260 ~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 260 FAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-P-QPDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp SSCCC-SCCSCCC--SCCSCEECCSCCCCSC-C-CTTSCCCCSCEECSSTTTSCC
T ss_pred CCCCC-chhhhhc--CCCCEEECCCCcCCCC-c-hhhhCCCccEEECcCCCCCCC
Confidence 99999 6677664 8999999999999976 3 278999999999999999863
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=1.9e-21 Score=186.38 Aligned_cols=212 Identities=19% Similarity=0.220 Sum_probs=163.0
Q ss_pred ccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccc
Q 043523 297 IRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNL 376 (650)
Q Consensus 297 L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 376 (650)
.++++++++.+.......++++++|++++|+++.++...+..+++|+++++++|.+....+..+..+++|+.|++++|.+
T Consensus 18 ~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l 97 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97 (270)
T ss_dssp TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCC
T ss_pred CCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcC
Confidence 34555555555543333445666777777777766665556677888888888877766666667788888888888888
Q ss_pred cccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccc
Q 043523 377 SGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFP 456 (650)
Q Consensus 377 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 456 (650)
....+..+... ++|++|++++|.+. .++...|..+++|++|++++|.+++..+..|..+++|++|++++|++..+.+
T Consensus 98 ~~~~~~~~~~l--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 98 QALPIGVFDQL--VNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp CCCCTTTTTTC--SSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCHhHcccc--cCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 74444444333 38999999999888 5555568999999999999999997777779999999999999999999878
Q ss_pred hhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccC-hHHHHhH
Q 043523 457 CWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLS-QKWLLTM 513 (650)
Q Consensus 457 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~l 513 (650)
..|..+++|++|++++|+++... ...+..+++|+.|++++|++.+.+. ..++..+
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~ 230 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVP--EGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKW 230 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSSCBCCSSSSSHHHHHH
T ss_pred hHhccCCCcCEEECCCCcCCcCC--HHHhccccCCCEEEecCCCeeCCCccHHHHHHH
Confidence 88999999999999999998654 4567889999999999999999886 4444443
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=3.6e-22 Score=191.63 Aligned_cols=84 Identities=18% Similarity=0.171 Sum_probs=44.7
Q ss_pred CCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEE
Q 043523 559 PNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLN 638 (650)
Q Consensus 559 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~ 638 (650)
++.|+.|++++|.+++..+..+..+++|++|++++|++++..+..++.+++|++|++++|.+.+. +++|+.++
T Consensus 156 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~ 228 (272)
T 3rfs_A 156 LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLS 228 (272)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHH
T ss_pred CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHH
Confidence 34444455555555444444455555555555555555555555555555555555555555422 33455555
Q ss_pred ccCCcCcccCC
Q 043523 639 LSYNNLVGKIP 649 (650)
Q Consensus 639 l~~n~~~~~~p 649 (650)
++.|.++|.+|
T Consensus 229 ~~~n~~~g~ip 239 (272)
T 3rfs_A 229 EWINKHSGVVR 239 (272)
T ss_dssp HHHHHTGGGBB
T ss_pred HHHHhCCCccc
Confidence 55555555555
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=2.5e-21 Score=186.94 Aligned_cols=213 Identities=21% Similarity=0.199 Sum_probs=179.3
Q ss_pred cCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECc
Q 043523 293 SISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLS 372 (650)
Q Consensus 293 ~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~ 372 (650)
.++++++++++++.+.......+++++.|++++|+++.++...+..+++|+.+++++|.+.+..+. ..+++|+.|+++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls 85 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLS 85 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECC
T ss_pred ccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECC
Confidence 356677777777777766555667888888888888877777677789999999999998876443 688899999999
Q ss_pred CccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccc
Q 043523 373 NNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHIS 452 (650)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 452 (650)
+|.+. .+|..+.. .++|++|++++|++. .++...|..+++|++|++++|++++..+..|..+++|++|+|++|+++
T Consensus 86 ~N~l~-~l~~~~~~--l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 86 HNQLQ-SLPLLGQT--LPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp SSCCS-SCCCCTTT--CTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred CCcCC-cCchhhcc--CCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 99987 56654443 349999999999998 666666999999999999999999887888899999999999999999
Q ss_pred cccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHH
Q 043523 453 DNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTME 514 (650)
Q Consensus 453 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~ 514 (650)
.+.+..|..+++|++|++++|+++.. +..+...++|+.+++++|++.|.+...|+..|.
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~~i---p~~~~~~~~L~~l~L~~Np~~C~c~~~~l~~wl 220 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLYTI---PKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWL 220 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCC---CTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHH
T ss_pred ccCHHHhcCcCCCCEEECCCCcCCcc---ChhhcccccCCeEEeCCCCccCcCccHHHHHHH
Confidence 97777888999999999999999843 667777889999999999999999888876653
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=2.8e-21 Score=186.64 Aligned_cols=87 Identities=20% Similarity=0.208 Sum_probs=52.5
Q ss_pred CCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeE
Q 043523 558 VPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVL 637 (650)
Q Consensus 558 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L 637 (650)
.++.|++|++++|.+.++.+..+..+++|+.|++++|+++...+..|..+++|++|++++|+++. +|..+..+++|+.+
T Consensus 122 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l 200 (290)
T 1p9a_G 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFA 200 (290)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEE
T ss_pred CCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeE
Confidence 34555555555555555555556666666666666666665555555666666666666666663 34445555666666
Q ss_pred EccCCcCc
Q 043523 638 NLSYNNLV 645 (650)
Q Consensus 638 ~l~~n~~~ 645 (650)
++++|++.
T Consensus 201 ~L~~Np~~ 208 (290)
T 1p9a_G 201 FLHGNPWL 208 (290)
T ss_dssp ECCSCCBC
T ss_pred EeCCCCcc
Confidence 66666654
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=8.8e-23 Score=204.71 Aligned_cols=264 Identities=17% Similarity=0.182 Sum_probs=173.6
Q ss_pred EEecCCCcCCCCchhhhhccCCccEEEccCCccccccc----ccccCCC-cccEEECcCccccccCChhhhhc---cccC
Q 043523 320 YVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIP----ESVCKGI-YFQVLDLSNNNLSGTIPACLIAQ---SETT 391 (650)
Q Consensus 320 ~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~---~~~~ 391 (650)
+..++.+.++.....+....+.++++++++|.+.+..+ ..+..++ +|++|++++|.+.+..+..+... ..++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35677777776555566656679999999988887766 6667777 89999999998886666555442 0137
Q ss_pred ccEEEccCccCCCcCCCc---ccCCC-CCccEEEcCCCccccccchhcc----c-CCCCCEEeCCCCccccccch----h
Q 043523 392 LGVLNLGRNNLNGTLSDT---IFPRN-CGLQILDLGGNQLQGVVPKSLA----N-CNMLQVLDLKNNHISDNFPC----W 458 (650)
Q Consensus 392 L~~L~l~~~~~~~~~~~~---~~~~l-~~L~~L~ls~~~i~~~~~~~~~----~-l~~L~~L~Ls~n~l~~~~~~----~ 458 (650)
|++|++++|.+.+..+.. .+..+ ++|++|++++|++++..+..+. . +++|++|+|++|++++..+. .
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 888888888877443332 13344 6788888888888766554443 3 36888888888888864433 3
Q ss_pred hhcCC-CCCeEEccCcccceecC--CCCCCCCC-CCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeec
Q 043523 459 LGNAS-SLQVLVLQSNNFSGHIS--CPRNNVSW-PLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVI 534 (650)
Q Consensus 459 ~~~~~-~L~~L~l~~n~~~~~~~--~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~ 534 (650)
+..++ +|++|++++|.++.... +...+..+ ++|++|++++|.+..........
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~----------------------- 218 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY----------------------- 218 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH-----------------------
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH-----------------------
Confidence 34454 88888888888764320 11233344 48888888888776432211111
Q ss_pred cCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCC----ccccCCcCCCEEeCccccCccc-------CCcC
Q 043523 535 SSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIP----EEMGRFKSLYALNMSHNALTGS-------IPSS 603 (650)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~----~~~~~l~~L~~L~ls~n~i~~~-------~~~~ 603 (650)
.....+++|++|++++|.+.+... ..+..+++|++|++++|.+.+. .+..
T Consensus 219 -------------------~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~ 279 (362)
T 3goz_A 219 -------------------IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAA 279 (362)
T ss_dssp -------------------HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTT
T ss_pred -------------------HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHH
Confidence 111234678888888888876544 3345667888888888874422 3345
Q ss_pred ccCCCCCCeeeCCCCcCCccCC
Q 043523 604 FGNLKQIESLDLSMNNLSGKIP 625 (650)
Q Consensus 604 ~~~l~~L~~L~l~~n~i~~~~~ 625 (650)
+..+++|+.||+++|.+....+
T Consensus 280 ~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 280 FPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp STTCCEEEEECTTSCBCCGGGC
T ss_pred hccCCceEEEecCCCcCCCcch
Confidence 6677788888888888775533
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=8e-21 Score=179.93 Aligned_cols=105 Identities=16% Similarity=0.171 Sum_probs=63.8
Q ss_pred CccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEc
Q 043523 391 TLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVL 470 (650)
Q Consensus 391 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 470 (650)
..+.++++++.+. .+|.. +. ++++.|++++|++.+..+..|..+++|++|+|++|.+.+..+..|..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~-~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSG-IP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCS-SCCSC-CC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCcc-ccCCC-CC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 4556666666655 44443 22 35677777777776666666667777777777777777666666666777777777
Q ss_pred cCcccceecCCCCCCCCCCCCCeeeCCCccc
Q 043523 471 QSNNFSGHISCPRNNVSWPLLQIVDLASNKF 501 (650)
Q Consensus 471 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 501 (650)
++|+++... +..+..+++|++|++++|.+
T Consensus 91 ~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l 119 (251)
T 3m19_A 91 ANNQLASLP--LGVFDHLTQLDKLYLGGNQL 119 (251)
T ss_dssp TTSCCCCCC--TTTTTTCTTCCEEECCSSCC
T ss_pred CCCcccccC--hhHhcccCCCCEEEcCCCcC
Confidence 777665432 33444555555555555544
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=2.9e-23 Score=210.57 Aligned_cols=195 Identities=16% Similarity=0.184 Sum_probs=113.8
Q ss_pred CCCCCccEEEcCCCcccc----ccchhcccCCCCCEEeCCCCccccccchhhhc----C---------CCCCeEEccCcc
Q 043523 412 PRNCGLQILDLGGNQLQG----VVPKSLANCNMLQVLDLKNNHISDNFPCWLGN----A---------SSLQVLVLQSNN 474 (650)
Q Consensus 412 ~~l~~L~~L~ls~~~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----~---------~~L~~L~l~~n~ 474 (650)
..+++|++|++++|.+.. .++..+..+++|++|+|++|.+.+..+..+.. + ++|++|++++|+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 455666666666666654 24455566666666666666665433333322 2 666666666666
Q ss_pred cceec--CCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccch
Q 043523 475 FSGHI--SCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVE 552 (650)
Q Consensus 475 ~~~~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 552 (650)
++... .+...+..+++|++|++++|.+........ .
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l------------------------------------------~ 208 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL------------------------------------------L 208 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHH------------------------------------------H
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHH------------------------------------------H
Confidence 64211 011234455666666666665541110000 0
Q ss_pred hhcccCCCcccEEeCCCCccc----cCCCccccCCcCCCEEeCccccCccc----CCcCcc--CCCCCCeeeCCCCcCCc
Q 043523 553 TMLLKVPNIFTSIDFSSNNFE----GPIPEEMGRFKSLYALNMSHNALTGS----IPSSFG--NLKQIESLDLSMNNLSG 622 (650)
Q Consensus 553 ~~~~~~~~~l~~L~l~~~~~~----~~~~~~~~~l~~L~~L~ls~n~i~~~----~~~~~~--~l~~L~~L~l~~n~i~~ 622 (650)
...+..++.|++|++++|.++ ...+..+..+++|++|+|++|.+++. ++.++. .+++|++|++++|.++.
T Consensus 209 ~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 209 LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 011234566677777777764 34445666777788888888877754 345553 37778888888887776
Q ss_pred ----cCCccc-cCCCCCCeEEccCCcCcccC
Q 043523 623 ----KIPAQL-ASLNFLSVLNLSYNNLVGKI 648 (650)
Q Consensus 623 ----~~~~~l-~~l~~L~~L~l~~n~~~~~~ 648 (650)
.+|..+ .++++|+.|++++|++++..
T Consensus 289 ~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 289 DAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 355555 56778888888888777654
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=7.8e-21 Score=182.27 Aligned_cols=93 Identities=20% Similarity=0.223 Sum_probs=82.0
Q ss_pred CCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeE
Q 043523 558 VPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVL 637 (650)
Q Consensus 558 ~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L 637 (650)
.++.|++|++++|.+.+..+..+..+++|++|++++|++++..+..|+.+++|++|++++|.+++.++..+..+++|+.|
T Consensus 131 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 210 (272)
T 3rfs_A 131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 210 (272)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEE
Confidence 45566667777777776777778899999999999999998888888999999999999999999999899999999999
Q ss_pred EccCCcCcccCCC
Q 043523 638 NLSYNNLVGKIPT 650 (650)
Q Consensus 638 ~l~~n~~~~~~p~ 650 (650)
++++|++.+..|.
T Consensus 211 ~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 211 WLHDNPWDCTCPG 223 (272)
T ss_dssp ECCSSCBCCCTTT
T ss_pred EccCCCccccCcH
Confidence 9999999988773
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=3.7e-22 Score=200.15 Aligned_cols=257 Identities=17% Similarity=0.137 Sum_probs=152.7
Q ss_pred EEeccCcCCCCCCC---CCCCccEEecCCCcCCCCch----hhhhccC-CccEEEccCCcccccccccccCC-----Ccc
Q 043523 300 LDLHSNQLRGNIPH---MSTNTSYVDYSNNHFTFIPA----DIGNFMS-ETEYFFAANNSLVGVIPESVCKG-----IYF 366 (650)
Q Consensus 300 L~l~~~~l~~~~~~---~~~~L~~L~l~~~~i~~~~~----~~~~~~~-~l~~l~l~~~~~~~~~~~~l~~~-----~~L 366 (650)
+.++.+.+.+..+. ...++++|++++|.++..+. ..+..++ +++++++++|.+.+..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 34556666554332 33457777787777776664 4444455 77778887777777666555553 777
Q ss_pred cEEECcCccccccCChhhhhc--cc-cCccEEEccCccCCCcCCCc---ccCC-CCCccEEEcCCCccccccc----hhc
Q 043523 367 QVLDLSNNNLSGTIPACLIAQ--SE-TTLGVLNLGRNNLNGTLSDT---IFPR-NCGLQILDLGGNQLQGVVP----KSL 435 (650)
Q Consensus 367 ~~L~l~~~~~~~~~~~~~~~~--~~-~~L~~L~l~~~~~~~~~~~~---~~~~-l~~L~~L~ls~~~i~~~~~----~~~ 435 (650)
++|++++|.+.+..+..+... .. ++|++|++++|.+.+..... .+.. .++|++|++++|++++..+ .++
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 778887777765555433322 11 37777888777776333222 1333 3577778887777775433 333
Q ss_pred ccCC-CCCEEeCCCCccccccchhhh----cC-CCCCeEEccCcccceecC--CCCCCCC-CCCCCeeeCCCcccccccC
Q 043523 436 ANCN-MLQVLDLKNNHISDNFPCWLG----NA-SSLQVLVLQSNNFSGHIS--CPRNNVS-WPLLQIVDLASNKFSGRLS 506 (650)
Q Consensus 436 ~~l~-~L~~L~Ls~n~l~~~~~~~~~----~~-~~L~~L~l~~n~~~~~~~--~~~~~~~-~~~L~~L~l~~n~~~~~~~ 506 (650)
..++ +|++|+|++|++++..+..+. .+ ++|++|++++|.+..... ++..+.. .++|++|++++|.+.+...
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 4444 777888888777765554333 34 477788888777764210 1222323 3577778887777654322
Q ss_pred hHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCC-------cc
Q 043523 507 QKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIP-------EE 579 (650)
Q Consensus 507 ~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-------~~ 579 (650)
.... ......+.|+.|++++|.+.++.. ..
T Consensus 243 ~~l~-------------------------------------------~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~ 279 (362)
T 3goz_A 243 ENLK-------------------------------------------LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAA 279 (362)
T ss_dssp HHHH-------------------------------------------HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTT
T ss_pred HHHH-------------------------------------------HHHhcCCCccEEEeccCCccccCHHHHHHHHHH
Confidence 1110 112345667777777777443332 24
Q ss_pred ccCCcCCCEEeCccccCccc
Q 043523 580 MGRFKSLYALNMSHNALTGS 599 (650)
Q Consensus 580 ~~~l~~L~~L~ls~n~i~~~ 599 (650)
+..+++|++|++++|++.+.
T Consensus 280 ~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 280 FPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp STTCCEEEEECTTSCBCCGG
T ss_pred hccCCceEEEecCCCcCCCc
Confidence 55667777777877777654
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=2.5e-21 Score=182.12 Aligned_cols=197 Identities=17% Similarity=0.152 Sum_probs=160.0
Q ss_pred CccEEEccCccCCCcCCCcccCCCCCccEEEcCCCc-cccccchhcccCCCCCEEeCCC-CccccccchhhhcCCCCCeE
Q 043523 391 TLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQ-LQGVVPKSLANCNMLQVLDLKN-NHISDNFPCWLGNASSLQVL 468 (650)
Q Consensus 391 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~-i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~L~~L 468 (650)
++++|++++|++. .++...|..+++|++|++++|+ ++...+.+|..+++|++|++++ |++..+.+..|.++++|++|
T Consensus 32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 7888888888887 5555568889999999999996 8867777889999999999998 88988777788889999999
Q ss_pred EccCcccceecCCCCCCCCCCCCC---eeeCCCc-ccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecce
Q 043523 469 VLQSNNFSGHISCPRNNVSWPLLQ---IVDLASN-KFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGV 544 (650)
Q Consensus 469 ~l~~n~~~~~~~~~~~~~~~~~L~---~L~l~~n-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 544 (650)
++++|+++.. +. +..+++|+ +|++++| .+....
T Consensus 111 ~l~~n~l~~l---p~-~~~l~~L~~L~~L~l~~N~~l~~i~--------------------------------------- 147 (239)
T 2xwt_C 111 GIFNTGLKMF---PD-LTKVYSTDIFFILEITDNPYMTSIP--------------------------------------- 147 (239)
T ss_dssp EEEEECCCSC---CC-CTTCCBCCSEEEEEEESCTTCCEEC---------------------------------------
T ss_pred eCCCCCCccc---cc-cccccccccccEEECCCCcchhhcC---------------------------------------
Confidence 9999988753 33 67777887 9999998 654211
Q ss_pred EEeeccchhhcccCCCccc-EEeCCCCccccCCCccccCCcCCCEEeCcccc-CcccCCcCccCC-CCCCeeeCCCCcCC
Q 043523 545 TVTVKGVETMLLKVPNIFT-SIDFSSNNFEGPIPEEMGRFKSLYALNMSHNA-LTGSIPSSFGNL-KQIESLDLSMNNLS 621 (650)
Q Consensus 545 ~~~~~~~~~~~~~~~~~l~-~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~-i~~~~~~~~~~l-~~L~~L~l~~n~i~ 621 (650)
...+..++.|+ .|++++|.+..+....+.. ++|++|++++|+ +++..+.+|..+ ++|++|++++|+++
T Consensus 148 --------~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 148 --------VNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp --------TTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred --------cccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 12234678888 9999999998666666666 899999999995 997778889999 99999999999999
Q ss_pred ccCCccccCCCCCCeEEccCCc
Q 043523 622 GKIPAQLASLNFLSVLNLSYNN 643 (650)
Q Consensus 622 ~~~~~~l~~l~~L~~L~l~~n~ 643 (650)
+.++. .+++|+.|+++++.
T Consensus 219 ~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 219 ALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp CCCCT---TCTTCSEEECTTC-
T ss_pred cCChh---HhccCceeeccCcc
Confidence 76554 67889999999875
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=3.2e-22 Score=199.14 Aligned_cols=176 Identities=19% Similarity=0.240 Sum_probs=88.5
Q ss_pred CccEEecCCCcCCCCchhhhhcc--CCccEEEccCCcccccccccccCCCcccEEECcCcccccc-CChhhhhccccCcc
Q 043523 317 NTSYVDYSNNHFTFIPADIGNFM--SETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGT-IPACLIAQSETTLG 393 (650)
Q Consensus 317 ~L~~L~l~~~~i~~~~~~~~~~~--~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~ 393 (650)
.++.++++++.+. + ...... +.++.++++++.+.+..+. +..+++|+.|++++|.+.+. ++..+... ++|+
T Consensus 48 ~~~~l~l~~~~~~--~-~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~--~~L~ 121 (336)
T 2ast_B 48 LWQTLDLTGKNLH--P-DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQC--SKLQ 121 (336)
T ss_dssp TSSEEECTTCBCC--H-HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTB--CCCS
T ss_pred hheeeccccccCC--H-HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhC--CCCC
Confidence 4667777776665 2 222223 6677777777666655443 44566666666666665433 33332222 2555
Q ss_pred EEEccCccCCCcCCCcccCCCCCccEEEcCCC-ccccc-cchhcccCCCCCEEeCCCC-ccccc-cchhhhcCC-CCCeE
Q 043523 394 VLNLGRNNLNGTLSDTIFPRNCGLQILDLGGN-QLQGV-VPKSLANCNMLQVLDLKNN-HISDN-FPCWLGNAS-SLQVL 468 (650)
Q Consensus 394 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~-~i~~~-~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~~~-~L~~L 468 (650)
+|++++|.+.+..+.. +..+++|++|++++| .+++. .+..+..+++|++|++++| .+++. .+..+..++ +|++|
T Consensus 122 ~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L 200 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 200 (336)
T ss_dssp EEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred EEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence 5555555554333332 444555555555555 34432 3334455555555555555 55442 234444555 55555
Q ss_pred EccCcc--cceecCCCCCCCCCCCCCeeeCCCcc
Q 043523 469 VLQSNN--FSGHISCPRNNVSWPLLQIVDLASNK 500 (650)
Q Consensus 469 ~l~~n~--~~~~~~~~~~~~~~~~L~~L~l~~n~ 500 (650)
++++|. ++.. .++..+..+++|++|++++|.
T Consensus 201 ~l~~~~~~~~~~-~l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 201 NLSGYRKNLQKS-DLSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp ECCSCGGGSCHH-HHHHHHHHCTTCSEEECTTCT
T ss_pred EeCCCcccCCHH-HHHHHHhhCCCCCEEeCCCCC
Confidence 555553 2210 112233344555555555554
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1.8e-20 Score=183.04 Aligned_cols=189 Identities=19% Similarity=0.254 Sum_probs=93.9
Q ss_pred CccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEc
Q 043523 391 TLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVL 470 (650)
Q Consensus 391 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 470 (650)
+|++|++++|.+. .++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|++.+. ..+..+++|++|++
T Consensus 42 ~L~~L~l~~~~i~-~l~--~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l 114 (308)
T 1h6u_A 42 GITTLSAFGTGVT-TIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL 114 (308)
T ss_dssp TCCEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEEC
T ss_pred CcCEEEeeCCCcc-Cch--hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEEC
Confidence 4455555555444 222 14445555555555555543322 45555555555555555442 23445555555555
Q ss_pred cCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeecc
Q 043523 471 QSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKG 550 (650)
Q Consensus 471 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 550 (650)
++|.++... .+..+++|++|++++|.+....+
T Consensus 115 ~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~~-------------------------------------------- 146 (308)
T 1h6u_A 115 TSTQITDVT----PLAGLSNLQVLYLDLNQITNISP-------------------------------------------- 146 (308)
T ss_dssp TTSCCCCCG----GGTTCTTCCEEECCSSCCCCCGG--------------------------------------------
T ss_pred CCCCCCCch----hhcCCCCCCEEECCCCccCcCcc--------------------------------------------
Confidence 555554321 24445555555555554432110
Q ss_pred chhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccC
Q 043523 551 VETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLAS 630 (650)
Q Consensus 551 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~ 630 (650)
+..++.|+.|++++|.+.+..+ +..+++|+.|++++|++++..+ +..+++|++|++++|++++..+ +..
T Consensus 147 -----l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~ 215 (308)
T 1h6u_A 147 -----LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LAN 215 (308)
T ss_dssp -----GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTT
T ss_pred -----ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccC
Confidence 1234455555555555554322 5555566666666666553322 4555666666666666654432 555
Q ss_pred CCCCCeEEccCCcCc
Q 043523 631 LNFLSVLNLSYNNLV 645 (650)
Q Consensus 631 l~~L~~L~l~~n~~~ 645 (650)
+++|+.|++++|+++
T Consensus 216 l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 216 TSNLFIVTLTNQTIT 230 (308)
T ss_dssp CTTCCEEEEEEEEEE
T ss_pred CCCCCEEEccCCeee
Confidence 666666666666554
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=6.5e-20 Score=173.64 Aligned_cols=191 Identities=22% Similarity=0.235 Sum_probs=158.8
Q ss_pred CccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEE
Q 043523 317 NTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLN 396 (650)
Q Consensus 317 ~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 396 (650)
..+.++++++.++.+|..+ .+.++.+++++|.+.+..+..+..+++|+.|++++|.+.+..+..+.... +|++|+
T Consensus 15 ~~~~l~~~~~~l~~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~ 89 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT--ELGTLG 89 (251)
T ss_dssp GGTEEECTTCCCSSCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT--TCCEEE
T ss_pred CCeEEecCCCCccccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC--cCCEEE
Confidence 4566777777777777665 36788888888888887777888888899999999888866555554443 899999
Q ss_pred ccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccc
Q 043523 397 LGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFS 476 (650)
Q Consensus 397 l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~ 476 (650)
+++|.+. .++...|..+++|++|++++|++++..+..|..+++|++|+|++|++..+.+..|..+++|++|++++|+++
T Consensus 90 L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 90 LANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp CTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 9999988 566666899999999999999999777777899999999999999999977778999999999999999998
Q ss_pred eecCCCCCCCCCCCCCeeeCCCcccccc-cChHHHHhHHh
Q 043523 477 GHISCPRNNVSWPLLQIVDLASNKFSGR-LSQKWLLTMEE 515 (650)
Q Consensus 477 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~l~~ 515 (650)
... +..+..+++|++|++++|++.+. +...++..+..
T Consensus 169 ~~~--~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~ 206 (251)
T 3m19_A 169 SVP--HGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIR 206 (251)
T ss_dssp CCC--TTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHH
T ss_pred ccC--HHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHH
Confidence 654 55788899999999999999988 77777766654
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=8.7e-21 Score=188.76 Aligned_cols=255 Identities=15% Similarity=0.157 Sum_probs=190.4
Q ss_pred cCCccEEEccCCcccccccccccCC--CcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCC
Q 043523 339 MSETEYFFAANNSLVGVIPESVCKG--IYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCG 416 (650)
Q Consensus 339 ~~~l~~l~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 416 (650)
...++.++++++.+. +..+..+ ++++.+++++|.+.+..+..+ ..++|++|++++|.+.+......+..+++
T Consensus 46 ~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~---~~~~L~~L~L~~~~l~~~~~~~~~~~~~~ 119 (336)
T 2ast_B 46 ESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHF---SPFRVQHMDLSNSVIEVSTLHGILSQCSK 119 (336)
T ss_dssp STTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCC---CCBCCCEEECTTCEECHHHHHHHHTTBCC
T ss_pred chhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhc---cCCCCCEEEccCCCcCHHHHHHHHhhCCC
Confidence 345788999888766 3445555 788999999998886655532 23589999999998775423344788899
Q ss_pred ccEEEcCCCccccccchhcccCCCCCEEeCCCC-ccccc-cchhhhcCCCCCeEEccCc-ccceecCCCCCCCCCC-CCC
Q 043523 417 LQILDLGGNQLQGVVPKSLANCNMLQVLDLKNN-HISDN-FPCWLGNASSLQVLVLQSN-NFSGHISCPRNNVSWP-LLQ 492 (650)
Q Consensus 417 L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~~-~L~ 492 (650)
|++|++++|.+++..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .++... ++..+..++ +|+
T Consensus 120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~l~~~L~ 198 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH-VQVAVAHVSETIT 198 (336)
T ss_dssp CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH-HHHHHHHSCTTCC
T ss_pred CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHH-HHHHHHhcccCCC
Confidence 999999999988778888888999999999999 67752 5666788999999999999 776421 144566788 999
Q ss_pred eeeCCCcc--cccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCC
Q 043523 493 IVDLASNK--FSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSN 570 (650)
Q Consensus 493 ~L~l~~n~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~ 570 (650)
+|++++|. ++.. .+ ......+++|++|++++|
T Consensus 199 ~L~l~~~~~~~~~~----~l------------------------------------------~~~~~~~~~L~~L~l~~~ 232 (336)
T 2ast_B 199 QLNLSGYRKNLQKS----DL------------------------------------------STLVRRCPNLVHLDLSDS 232 (336)
T ss_dssp EEECCSCGGGSCHH----HH------------------------------------------HHHHHHCTTCSEEECTTC
T ss_pred EEEeCCCcccCCHH----HH------------------------------------------HHHHhhCCCCCEEeCCCC
Confidence 99999984 3210 00 011135789999999999
Q ss_pred c-cccCCCccccCCcCCCEEeCcccc-CcccCCcCccCCCCCCeeeCCCCcCCccCCccccCC-CCCCeEEccCCcCccc
Q 043523 571 N-FEGPIPEEMGRFKSLYALNMSHNA-LTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASL-NFLSVLNLSYNNLVGK 647 (650)
Q Consensus 571 ~-~~~~~~~~~~~l~~L~~L~ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l-~~L~~L~l~~n~~~~~ 647 (650)
. +++..+..+..+++|++|++++|. ++......++.+++|++|++++| ++ .+.+..+ .++..|++++|.+++.
T Consensus 233 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 233 VMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTI 308 (336)
T ss_dssp TTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCT
T ss_pred CcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccc
Confidence 9 666677788999999999999994 54444446888999999999999 44 3344444 3467777999999998
Q ss_pred CCC
Q 043523 648 IPT 650 (650)
Q Consensus 648 ~p~ 650 (650)
.|.
T Consensus 309 ~~~ 311 (336)
T 2ast_B 309 ARP 311 (336)
T ss_dssp TCS
T ss_pred cCC
Confidence 874
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=2e-21 Score=197.03 Aligned_cols=255 Identities=14% Similarity=0.128 Sum_probs=184.0
Q ss_pred CCcCCCCchhhhhccCCccEEEccCCcccccccc----cccCCCcccEEECcCccc---cccCChhhh-----hccccCc
Q 043523 325 NNHFTFIPADIGNFMSETEYFFAANNSLVGVIPE----SVCKGIYFQVLDLSNNNL---SGTIPACLI-----AQSETTL 392 (650)
Q Consensus 325 ~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~---~~~~~~~~~-----~~~~~~L 392 (650)
...+..+...+. .++.++.+++++|.+....+. .+..+++|+.|++++|.+ .+.+|..+. ....++|
T Consensus 18 ~~~~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L 96 (386)
T 2ca6_A 18 TEDEKSVFAVLL-EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKL 96 (386)
T ss_dssp SHHHHTTSHHHH-HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHh-cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcc
Confidence 333444444443 377899999999988776443 466889999999998744 344454431 1233599
Q ss_pred cEEEccCccCCCc----CCCcccCCCCCccEEEcCCCccccccchhc----ccC---------CCCCEEeCCCCcccc-c
Q 043523 393 GVLNLGRNNLNGT----LSDTIFPRNCGLQILDLGGNQLQGVVPKSL----ANC---------NMLQVLDLKNNHISD-N 454 (650)
Q Consensus 393 ~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~----~~l---------~~L~~L~Ls~n~l~~-~ 454 (650)
++|++++|.+.+. ++. .+..+++|++|++++|.+....+..+ ..+ ++|++|++++|++.+ .
T Consensus 97 ~~L~Ls~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~ 175 (386)
T 2ca6_A 97 HTVRLSDNAFGPTAQEPLID-FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175 (386)
T ss_dssp CEEECCSCCCCTTTHHHHHH-HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred cEEECCCCcCCHHHHHHHHH-HHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence 9999999998852 333 36788999999999999875544443 344 899999999999974 2
Q ss_pred cc---hhhhcCCCCCeEEccCcccceec--CC-CCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccc
Q 043523 455 FP---CWLGNASSLQVLVLQSNNFSGHI--SC-PRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELK 528 (650)
Q Consensus 455 ~~---~~~~~~~~L~~L~l~~n~~~~~~--~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 528 (650)
.+ ..+..+++|++|++++|.+.... .+ +..+..+++|++|++++|.++.......
T Consensus 176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l------------------- 236 (386)
T 2ca6_A 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL------------------- 236 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH-------------------
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHH-------------------
Confidence 33 36678999999999999987321 11 2267788999999999998753111100
Q ss_pred cceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccC----CCcccc--CCcCCCEEeCccccCcc----
Q 043523 529 HLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGP----IPEEMG--RFKSLYALNMSHNALTG---- 598 (650)
Q Consensus 529 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~----~~~~~~--~l~~L~~L~ls~n~i~~---- 598 (650)
...+..+++|++|++++|.+.+. .+..+. .+++|+.|+|++|.+++
T Consensus 237 ------------------------~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~ 292 (386)
T 2ca6_A 237 ------------------------AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR 292 (386)
T ss_dssp ------------------------HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH
T ss_pred ------------------------HHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHH
Confidence 01123578899999999998765 334553 38999999999999997
Q ss_pred cCCcCc-cCCCCCCeeeCCCCcCCccC
Q 043523 599 SIPSSF-GNLKQIESLDLSMNNLSGKI 624 (650)
Q Consensus 599 ~~~~~~-~~l~~L~~L~l~~n~i~~~~ 624 (650)
.++.++ .++++|++|++++|.+++..
T Consensus 293 ~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 293 TLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHHhcCCCceEEEccCCcCCcch
Confidence 477776 66899999999999999766
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.82 E-value=4.9e-20 Score=180.52 Aligned_cols=227 Identities=21% Similarity=0.179 Sum_probs=153.4
Q ss_pred CCCCEEeCCCCCCCCCCCCC---CCCCCcccEEEccCCcCcCCCCCCC--CCCCCCcEEEcCCCccccCCC----cCccC
Q 043523 21 PTLETLDLSENQLLQGSLPN---FPKNSSLRNLILSGTGFSGTLPDSI--GNLENLTWVEVRRCNFTGPIP----PSMAN 91 (650)
Q Consensus 21 ~~L~~L~ls~~~i~~~~~~~---~~~l~~L~~L~L~~~~~~~~~~~~~--~~l~~L~~L~L~~~~l~~~~~----~~l~~ 91 (650)
..++.+.+.++.+....... +..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 34677777777654322221 1224568888888888877777776 778888888888888875444 34456
Q ss_pred CCCCcEEEccCCcccccCC-ccccCCCcCEEeCCCCcCccc---CChHHHhccccCCeEEccCCcCCCCcch---hccCC
Q 043523 92 LTQLFHMDFSSNHFSGHIP-SLHKSRNLKYLDLSFNNLSGG---ISSTFWEQLVNLNLVLLSHNSLNGSIPR---SLFLL 164 (650)
Q Consensus 92 l~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~~~l~~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l 164 (650)
+++|++|++++|.+...++ .+..+++|++|++++|.+.+. ....++..+++|++|++++|.++..... .+..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 7888888888888876654 556778888888888876531 1122235677888888888887632211 24567
Q ss_pred CCCCEEEccCCcCCCCCchhhh--cCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCC
Q 043523 165 PNLETLWLSNNQFENQLPEISN--VSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPI 242 (650)
Q Consensus 165 ~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~ 242 (650)
++|++|++++|.+....+.... ..+++|++|++++|.+. .+|..++ ++|+.|++++|+++.+ +.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~---~~L~~L~Ls~N~l~~~----------~~ 289 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP---AKLRVLDLSSNRLNRA----------PQ 289 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC---SCCSCEECCSCCCCSC----------CC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc---CCCCEEECCCCcCCCC----------ch
Confidence 8888888888887755332221 12367888888888887 6676552 7888888888887633 22
Q ss_pred CCCCCCCcEEEccCCcCCC
Q 043523 243 LKNQSQLSGLDISNNQIPG 261 (650)
Q Consensus 243 l~~~~~L~~L~l~~~~i~~ 261 (650)
+..+++|+.|++++|.+.+
T Consensus 290 ~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 290 PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TTSCCCCSCEECSSTTTSC
T ss_pred hhhCCCccEEECcCCCCCC
Confidence 5567888888888888764
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=5.1e-20 Score=173.13 Aligned_cols=195 Identities=20% Similarity=0.187 Sum_probs=111.3
Q ss_pred cccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCc-cccCCCcCccCCCCCcEEEccC-CcccccCC-ccccCCCcCEEe
Q 043523 46 SLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCN-FTGPIPPSMANLTQLFHMDFSS-NHFSGHIP-SLHKSRNLKYLD 122 (650)
Q Consensus 46 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~~~~~~l~~l~~L~~L~l~~-~~i~~~~~-~~~~~~~L~~L~ 122 (650)
++++|++++|.+++..+..|.++++|++|++++|+ ++...+.+|.++++|++|++++ |.++..++ .+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555554444455555555555555554 5444444555555555555555 55554443 334455555555
Q ss_pred CCCCcCcccCChHHHhccccCC---eEEccCC-cCCCCcchhccCCCCCC-EEEccCCcCCCCCchhhhcCCCCccEEEc
Q 043523 123 LSFNNLSGGISSTFWEQLVNLN---LVLLSHN-SLNGSIPRSLFLLPNLE-TLWLSNNQFENQLPEISNVSSSVLFDLDL 197 (650)
Q Consensus 123 l~~~~l~~~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 197 (650)
+++|.+++ ++. +..+++|+ +|++++| .++...+..+..+++|+ .+++++|.+. .++...... .+|+.+++
T Consensus 112 l~~n~l~~-lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 112 IFNTGLKM-FPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEECCCS-CCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEEC
T ss_pred CCCCCCcc-ccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEc
Confidence 55555543 332 44555555 6666666 55544445566666666 6666666665 333322222 56777777
Q ss_pred cCCc-CCCCCchhHhhcC-CCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccCC
Q 043523 198 SGNR-LEGPVPISIIFEL-RNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNN 257 (650)
Q Consensus 198 ~~~~-l~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~ 257 (650)
++|+ +. .++...|..+ ++|+.|++++|+++.++. ..+++|+.|+++++
T Consensus 187 ~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~l~~-----------~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 187 NKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTALPS-----------KGLEHLKELIARNT 236 (239)
T ss_dssp TTCTTCC-EECTTTTTTCSBCCSEEECTTCCCCCCCC-----------TTCTTCSEEECTTC
T ss_pred CCCCCcc-cCCHHHhhccccCCcEEECCCCccccCCh-----------hHhccCceeeccCc
Confidence 7774 66 5555556777 788888888887764321 13567778877765
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.81 E-value=2e-19 Score=175.47 Aligned_cols=194 Identities=20% Similarity=0.279 Sum_probs=126.4
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCc
Q 043523 17 ILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLF 96 (650)
Q Consensus 17 ~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~ 96 (650)
+.++++|+.|+++++.+... +.+..+++|++|++++|.+.+. +. +..+++|++|++++|.+++ . ..+.++++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l--~~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-V-SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccCc--hhhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCCC
Confidence 45677888888888877443 4677778888888888877743 33 7778888888888887763 2 3577778888
Q ss_pred EEEccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCc
Q 043523 97 HMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQ 176 (650)
Q Consensus 97 ~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 176 (650)
+|++++|.+...+ .+..+++|++|++++|.+++. +. +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 111 ~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~-~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITDVT-PLAGLSNLQVLYLDLNQITNI-SP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCCCG-GGTTCTTCCEEECCSSCCCCC-GG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCch-hhcCCCCCCEEECCCCccCcC-cc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence 8888888777543 466777778888877777632 22 5677777777777777765433 6667777777777776
Q ss_pred CCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCCccc
Q 043523 177 FENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFS 228 (650)
Q Consensus 177 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~ 228 (650)
+....+ ...+++|++|++++|.+.+ ++. +..+++|+.|++++|+++
T Consensus 185 l~~~~~---l~~l~~L~~L~L~~N~l~~-~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 185 ISDISP---LASLPNLIEVHLKNNQISD-VSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCCCGG---GGGCTTCCEEECTTSCCCB-CGG--GTTCTTCCEEEEEEEEEE
T ss_pred cCcChh---hcCCCCCCEEEccCCccCc-ccc--ccCCCCCCEEEccCCeee
Confidence 653222 2234555555555555552 221 245555555555555544
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=1.8e-18 Score=172.39 Aligned_cols=241 Identities=17% Similarity=0.104 Sum_probs=130.6
Q ss_pred cEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEcc
Q 043523 319 SYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLG 398 (650)
Q Consensus 319 ~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 398 (650)
+.++.++++++.+|..+ ++++++|++++|.+....+..|.++++|+.|++++|.+.
T Consensus 12 ~~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~--------------------- 67 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL--------------------- 67 (350)
T ss_dssp TEEEEESTTCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTC---------------------
T ss_pred CEEEecCCCCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCC---------------------
Confidence 45666777777777654 345666666666666544445555555555555555543
Q ss_pred CccCCCcCCCcccCCCCCccE-EEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCc-ccc
Q 043523 399 RNNLNGTLSDTIFPRNCGLQI-LDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSN-NFS 476 (650)
Q Consensus 399 ~~~~~~~~~~~~~~~l~~L~~-L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n-~~~ 476 (650)
+.++...|..++++.+ +.+.+|+++...+++|..+++|++|++++|++....+..+....++..|++.++ .+.
T Consensus 68 -----~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~ 142 (350)
T 4ay9_X 68 -----EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH 142 (350)
T ss_dssp -----CEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC
T ss_pred -----CccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc
Confidence 3344444555555443 333445555455555555666666666666655544444444555555555442 333
Q ss_pred eecCCCCCCCCC-CCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhc
Q 043523 477 GHISCPRNNVSW-PLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETML 555 (650)
Q Consensus 477 ~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (650)
... ...+..+ ..++.|++++|.++...+. .
T Consensus 143 ~l~--~~~f~~~~~~l~~L~L~~N~i~~i~~~-----------------------------------------------~ 173 (350)
T 4ay9_X 143 TIE--RNSFVGLSFESVILWLNKNGIQEIHNS-----------------------------------------------A 173 (350)
T ss_dssp EEC--TTSSTTSBSSCEEEECCSSCCCEECTT-----------------------------------------------S
T ss_pred ccc--ccchhhcchhhhhhccccccccCCChh-----------------------------------------------h
Confidence 322 2223333 2455566666654321110 0
Q ss_pred ccCCCcccEEeCCC-CccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCC
Q 043523 556 LKVPNIFTSIDFSS-NNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFL 634 (650)
Q Consensus 556 ~~~~~~l~~L~l~~-~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L 634 (650)
+ ..+.++++++.+ |.+..+...+|..+++|++|++++|+|+...+.+| .+|+.|.+.++.-...+| .+.++++|
T Consensus 174 f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP-~l~~l~~L 248 (350)
T 4ay9_X 174 F-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLP-TLEKLVAL 248 (350)
T ss_dssp S-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCC-CTTTCCSC
T ss_pred c-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCC-CchhCcCh
Confidence 0 224556666653 55555555667777888888888888775444443 444555544443333444 37777778
Q ss_pred CeEEccCC
Q 043523 635 SVLNLSYN 642 (650)
Q Consensus 635 ~~L~l~~n 642 (650)
+.++++++
T Consensus 249 ~~l~l~~~ 256 (350)
T 4ay9_X 249 MEASLTYP 256 (350)
T ss_dssp CEEECSCH
T ss_pred hhCcCCCC
Confidence 88777653
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=1.4e-18 Score=159.51 Aligned_cols=107 Identities=23% Similarity=0.273 Sum_probs=51.8
Q ss_pred CccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEc
Q 043523 391 TLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVL 470 (650)
Q Consensus 391 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 470 (650)
++++|++++|.+. .++...|..+++|++|++++|++++..+..|..+++|++|++++|++..+.+..+..+++|++|++
T Consensus 29 ~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 29 QTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 4555555555554 333333455555555555555555444444455555555555555555444444445555555555
Q ss_pred cCcccceecCCCCCCCCCCCCCeeeCCCcc
Q 043523 471 QSNNFSGHISCPRNNVSWPLLQIVDLASNK 500 (650)
Q Consensus 471 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~ 500 (650)
++|.++... ...+..+++|++|++++|.
T Consensus 108 ~~N~l~~~~--~~~~~~l~~L~~L~l~~N~ 135 (208)
T 2o6s_A 108 NTNQLQSLP--DGVFDKLTQLKDLRLYQNQ 135 (208)
T ss_dssp CSSCCCCCC--TTTTTTCTTCCEEECCSSC
T ss_pred CCCcCcccC--HhHhccCCcCCEEECCCCc
Confidence 555544322 2223344444444444443
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=1.2e-18 Score=173.74 Aligned_cols=198 Identities=21% Similarity=0.197 Sum_probs=102.3
Q ss_pred cCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCC-CCCCCCCCCcE-EEcCCCcc
Q 043523 4 LSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLP-DSIGNLENLTW-VEVRRCNF 81 (650)
Q Consensus 4 l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~-L~L~~~~l 81 (650)
-++++++ .+|..+ .+++++|+|++|+|+.....+|.++++|++|+|++|.+.+.++ .+|.++++++. +.+++|++
T Consensus 16 C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l 92 (350)
T 4ay9_X 16 CQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL 92 (350)
T ss_dssp EESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTC
T ss_pred ecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcc
Confidence 3445555 344433 2456666666666655555566666666666666666543333 45566666553 44455666
Q ss_pred ccCCCcCccCCCCCcEEEccCCcccccCC-ccccCCCcCEEeCCCC-cCcccCChHHHhcc-ccCCeEEccCCcCCCCcc
Q 043523 82 TGPIPPSMANLTQLFHMDFSSNHFSGHIP-SLHKSRNLKYLDLSFN-NLSGGISSTFWEQL-VNLNLVLLSHNSLNGSIP 158 (650)
Q Consensus 82 ~~~~~~~l~~l~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~ 158 (650)
+...|.+|.++++|++|++++|++...++ .+....++..+++.++ .+. .++...+..+ ..++.|++++|+++.. +
T Consensus 93 ~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i~~i-~ 170 (350)
T 4ay9_X 93 LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQEI-H 170 (350)
T ss_dssp CEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCCEE-C
T ss_pred cccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhccccccccCC-C
Confidence 65556666666666666666666654443 2233455555665442 333 2222223333 2455566666655532 2
Q ss_pred hhccCCCCCCEEEccC-CcCCCCCchhhhcCCCCccEEEccCCcCCCCCch
Q 043523 159 RSLFLLPNLETLWLSN-NQFENQLPEISNVSSSVLFDLDLSGNRLEGPVPI 208 (650)
Q Consensus 159 ~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 208 (650)
.......+++.+++.+ |.+. .++...+..+++|+.|++++|++. .+|.
T Consensus 171 ~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~-~lp~ 219 (350)
T 4ay9_X 171 NSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPS 219 (350)
T ss_dssp TTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC-CCCS
T ss_pred hhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC-ccCh
Confidence 2222334555555543 2232 333333334455555555555555 4443
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=2.9e-18 Score=165.65 Aligned_cols=168 Identities=22% Similarity=0.320 Sum_probs=103.1
Q ss_pred CccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEc
Q 043523 391 TLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVL 470 (650)
Q Consensus 391 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 470 (650)
+|++|++++|.+. .++. +..+++|++|++++|++++..+ +..+++|++|++++|++.+. ..+..+++|++|++
T Consensus 47 ~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 119 (291)
T 1h6t_A 47 SIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSL 119 (291)
T ss_dssp TCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEEC
T ss_pred cccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEEC
Confidence 7777888777766 3332 6667777777777777775443 77777777777777777762 23667777777777
Q ss_pred cCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeecc
Q 043523 471 QSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKG 550 (650)
Q Consensus 471 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 550 (650)
++|.+... ..+..+++|+.|++++|.+...
T Consensus 120 ~~n~i~~~----~~l~~l~~L~~L~l~~n~l~~~---------------------------------------------- 149 (291)
T 1h6t_A 120 EHNGISDI----NGLVHLPQLESLYLGNNKITDI---------------------------------------------- 149 (291)
T ss_dssp TTSCCCCC----GGGGGCTTCCEEECCSSCCCCC----------------------------------------------
T ss_pred CCCcCCCC----hhhcCCCCCCEEEccCCcCCcc----------------------------------------------
Confidence 77776542 2455566677777766655421
Q ss_pred chhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCc
Q 043523 551 VETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSG 622 (650)
Q Consensus 551 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~ 622 (650)
..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++. + .+..+++|+.|++++|.++.
T Consensus 150 ---~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 150 ---TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp ---GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred ---hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 001234555666666666554433 55556666666666666532 2 25555666666666665554
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.76 E-value=5.3e-18 Score=155.53 Aligned_cols=109 Identities=25% Similarity=0.271 Sum_probs=76.2
Q ss_pred CccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEc
Q 043523 391 TLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVL 470 (650)
Q Consensus 391 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 470 (650)
+|++|++++|++. .++...|..+++|++|++++|++++..+..+..+++|++|++++|++....+..+..+++|++|++
T Consensus 53 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 131 (208)
T 2o6s_A 53 SLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL 131 (208)
T ss_dssp TCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEEC
Confidence 5555555555555 444445677778888888888877666666777888888888888887766666777888888888
Q ss_pred cCcccceecCCCCCCCCCCCCCeeeCCCcccc
Q 043523 471 QSNNFSGHISCPRNNVSWPLLQIVDLASNKFS 502 (650)
Q Consensus 471 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 502 (650)
++|.+++.. ...+..+++|++|++++|++.
T Consensus 132 ~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 132 YQNQLKSVP--DGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp CSSCCSCCC--TTTTTTCTTCCEEECCSCCBC
T ss_pred CCCccceeC--HHHhccCCCccEEEecCCCee
Confidence 888776543 344566777777777777553
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=9.9e-18 Score=154.60 Aligned_cols=80 Identities=24% Similarity=0.375 Sum_probs=45.9
Q ss_pred cEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccC
Q 043523 393 GVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQS 472 (650)
Q Consensus 393 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~ 472 (650)
+.++++++.+. .+|.. +. +++++|++++|++++..+..|..+++|++|+|++|++..+.+..|.++++|++|+|++
T Consensus 14 ~~v~c~~~~l~-~iP~~-l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTN-LP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSS-CC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCc-cC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 45666666655 44443 11 3566666666666655555566666666666666666655555555555555555555
Q ss_pred cccc
Q 043523 473 NNFS 476 (650)
Q Consensus 473 n~~~ 476 (650)
|+++
T Consensus 90 N~l~ 93 (220)
T 2v9t_B 90 NKIT 93 (220)
T ss_dssp SCCC
T ss_pred CcCC
Confidence 5554
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=1.3e-17 Score=153.87 Aligned_cols=164 Identities=21% Similarity=0.211 Sum_probs=120.9
Q ss_pred cEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEcc
Q 043523 319 SYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLG 398 (650)
Q Consensus 319 ~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 398 (650)
+.+++++++++.+|..+ .+.++.+++++|.+.+..+..+..+++ |++|+++
T Consensus 14 ~~v~c~~~~l~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~--------------------------L~~L~Ls 64 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKK--------------------------LRRIDLS 64 (220)
T ss_dssp TEEECTTSCCSSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTT--------------------------CCEEECC
T ss_pred CEEEcCCCCcCcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCC--------------------------CCEEECC
Confidence 46677777777766654 245566666666555544444444444 4555555
Q ss_pred CccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCccccee
Q 043523 399 RNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGH 478 (650)
Q Consensus 399 ~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~ 478 (650)
+|.+. .+....|..+++|++|++++|+++...+..|..+++|++|+|++|++..+.+..|..+++|++|++++|++++.
T Consensus 65 ~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 143 (220)
T 2v9t_B 65 NNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI 143 (220)
T ss_dssp SSCCC-EECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcCC-CcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEE
Confidence 55544 33333477888888888888888866666778888999999999999888788888899999999999998866
Q ss_pred cCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHH
Q 043523 479 ISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTME 514 (650)
Q Consensus 479 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~ 514 (650)
. ...+..+++|++|++++|++.|.+...|+..+.
T Consensus 144 ~--~~~~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l 177 (220)
T 2v9t_B 144 A--KGTFSPLRAIQTMHLAQNPFICDCHLKWLADYL 177 (220)
T ss_dssp C--TTTTTTCTTCCEEECCSSCEECSGGGHHHHHHH
T ss_pred C--HHHHhCCCCCCEEEeCCCCcCCCCccHHHHHHH
Confidence 5 556778899999999999999999999987653
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=1.4e-17 Score=153.53 Aligned_cols=165 Identities=23% Similarity=0.231 Sum_probs=125.3
Q ss_pred cEEecCCCcCCCCchhhhhccCCccEEEccCCccccccc-ccccCCCcccEEECcCccccccCChhhhhccccCccEEEc
Q 043523 319 SYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIP-ESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNL 397 (650)
Q Consensus 319 ~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 397 (650)
+.++++++.++.+|..+ ...++.+++++|.+.+..+ ..+..++ +|++|++
T Consensus 14 ~~l~~s~n~l~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~--------------------------~L~~L~L 64 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLP--------------------------QLRKINF 64 (220)
T ss_dssp TEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCT--------------------------TCCEEEC
T ss_pred CEeEeCCCCcccCccCC---CCCCCEEEcCCCcCCccCchhhhccCC--------------------------CCCEEEC
Confidence 46666666666666543 2334455555554444322 1223333 6666666
Q ss_pred cCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccce
Q 043523 398 GRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSG 477 (650)
Q Consensus 398 ~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 477 (650)
++|.+. .++...|..+++|++|++++|.+++..+..|..+++|++|+|++|++..+.+..|..+++|++|++++|.+++
T Consensus 65 ~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 143 (220)
T 2v70_A 65 SNNKIT-DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT 143 (220)
T ss_dssp CSSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCC
T ss_pred CCCcCC-EECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCE
Confidence 666665 4445558889999999999999998888889999999999999999999888899999999999999999987
Q ss_pred ecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHh
Q 043523 478 HISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEE 515 (650)
Q Consensus 478 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~ 515 (650)
.. +..+..+++|++|++++|++.|.++..|+..+..
T Consensus 144 ~~--~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~ 179 (220)
T 2v70_A 144 VA--PGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLR 179 (220)
T ss_dssp BC--TTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHH
T ss_pred EC--HHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHH
Confidence 65 6778889999999999999999999999876654
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=8.4e-18 Score=175.81 Aligned_cols=187 Identities=26% Similarity=0.355 Sum_probs=120.4
Q ss_pred cccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEE
Q 043523 365 YFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVL 444 (650)
Q Consensus 365 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L 444 (650)
+++.|++++|.+.+ +|..+. ++|++|++++|.+. .++ ..+++|++|++++|.+++ +|. +.. +|++|
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~----~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L 125 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP----PQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHL 125 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC----TTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEE
T ss_pred CccEEEeCCCCCCc-cCHhHc----CCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEE
Confidence 67788888887764 554332 37788888888777 555 235677788888887775 444 443 77788
Q ss_pred eCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccC
Q 043523 445 DLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSG 524 (650)
Q Consensus 445 ~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~ 524 (650)
++++|++++ +|. .+++|++|++++|.++.. +. .+++|++|++++|.++. ++
T Consensus 126 ~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l---p~---~l~~L~~L~Ls~N~L~~-lp------------------ 176 (571)
T 3cvr_A 126 DVDNNQLTM-LPE---LPALLEYINADNNQLTML---PE---LPTSLEVLSVRNNQLTF-LP------------------ 176 (571)
T ss_dssp ECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC---CC---CCTTCCEEECCSSCCSC-CC------------------
T ss_pred ECCCCcCCC-CCC---cCccccEEeCCCCccCcC---CC---cCCCcCEEECCCCCCCC-cc------------------
Confidence 888887777 333 577777777777777642 22 45677777777776542 11
Q ss_pred cccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCC-------CEEeCccccCc
Q 043523 525 SELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSL-------YALNMSHNALT 597 (650)
Q Consensus 525 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L-------~~L~ls~n~i~ 597 (650)
. ..++|+.|++++|.++.+.. +.. +| +.|+|++|+|+
T Consensus 177 ----------------------------~----l~~~L~~L~Ls~N~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~ 220 (571)
T 3cvr_A 177 ----------------------------E----LPESLEALDVSTNLLESLPA--VPV--RNHHSEETEIFFRCRENRIT 220 (571)
T ss_dssp ----------------------------C----CCTTCCEEECCSSCCSSCCC--CC----------CCEEEECCSSCCC
T ss_pred ----------------------------h----hhCCCCEEECcCCCCCchhh--HHH--hhhcccccceEEecCCCcce
Confidence 0 11566777777777764333 332 55 77777777777
Q ss_pred ccCCcCccCCCCCCeeeCCCCcCCccCCccccCC
Q 043523 598 GSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASL 631 (650)
Q Consensus 598 ~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l 631 (650)
.+|..+..+++|++|++++|.+++..|..+..+
T Consensus 221 -~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 221 -HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp -CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred -ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 456666667777777777777776666666554
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=1.4e-17 Score=153.64 Aligned_cols=67 Identities=28% Similarity=0.299 Sum_probs=34.3
Q ss_pred cccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCcCc
Q 043523 579 EMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV 645 (650)
Q Consensus 579 ~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~ 645 (650)
.+..+++|++|++++|++++..|..|..+++|++|++++|++++..|..|..+++|+.|++++|++.
T Consensus 100 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 100 MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp GGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred HhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 3444455555555555555444445555555555555555555444555555555555555555544
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=7.1e-18 Score=168.70 Aligned_cols=156 Identities=22% Similarity=0.143 Sum_probs=81.2
Q ss_pred ccEEEcCCCccccccchhcc-cCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeee
Q 043523 417 LQILDLGGNQLQGVVPKSLA-NCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVD 495 (650)
Q Consensus 417 L~~L~ls~~~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~ 495 (650)
++.|++++|++++..+..+. .+++|++|+|++|++..+.+..|..+++|++|+|++|+++... ...+.++++|++|+
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLD--EFLFSDLQALEVLL 118 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEE
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCC--HHHhCCCcCCCEEE
Confidence 55555555555544444444 5555555555555555544455555555555555555554432 23333444444444
Q ss_pred CCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccC
Q 043523 496 LASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGP 575 (650)
Q Consensus 496 l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~ 575 (650)
+++|.+ ..+
T Consensus 119 L~~N~i-----------------------------------------------------------------------~~~ 127 (361)
T 2xot_A 119 LYNNHI-----------------------------------------------------------------------VVV 127 (361)
T ss_dssp CCSSCC-----------------------------------------------------------------------CEE
T ss_pred CCCCcc-----------------------------------------------------------------------cEE
Confidence 444433 233
Q ss_pred CCccccCCcCCCEEeCccccCcccCCcCc---cCCCCCCeeeCCCCcCCccCCccccCCCC--CCeEEccCCcCc
Q 043523 576 IPEEMGRFKSLYALNMSHNALTGSIPSSF---GNLKQIESLDLSMNNLSGKIPAQLASLNF--LSVLNLSYNNLV 645 (650)
Q Consensus 576 ~~~~~~~l~~L~~L~ls~n~i~~~~~~~~---~~l~~L~~L~l~~n~i~~~~~~~l~~l~~--L~~L~l~~n~~~ 645 (650)
.+..+..+++|+.|+|++|+++...+..| ..+++|++|++++|.++.+++..+..++. ++.|++++|++.
T Consensus 128 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 128 DRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 34445555566666666666654333333 34566666666666666555555555555 356666666553
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=3.6e-18 Score=180.85 Aligned_cols=197 Identities=20% Similarity=0.272 Sum_probs=120.5
Q ss_pred ccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEe
Q 043523 366 FQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLD 445 (650)
Q Consensus 366 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~ 445 (650)
+..+.+..+.+.+..+. ..+..|+.|++++|.+. .++ .+..+++|+.|+|++|.+.+..+ +..+++|++|+
T Consensus 23 l~~l~l~~~~i~~~~~~----~~L~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 93 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVTQ----NELNSIDQIIANNSDIK-SVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHTTCSCTTSEECH----HHHTTCCCCBCTTCCCC-CCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred HHHHhccCCCcccccch----hcCCCCCEEECcCCCCC-CCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence 44445555555433332 12236777777777766 333 26667777777777777765443 66777777777
Q ss_pred CCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCc
Q 043523 446 LKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGS 525 (650)
Q Consensus 446 Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~ 525 (650)
|++|++.+. ..+..+++|++|+|++|.+... ..+..+++|+.|+|++|.+...
T Consensus 94 Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l----~~l~~l~~L~~L~Ls~N~l~~l--------------------- 146 (605)
T 1m9s_A 94 LDENKIKDL--SSLKDLKKLKSLSLEHNGISDI----NGLVHLPQLESLYLGNNKITDI--------------------- 146 (605)
T ss_dssp CCSSCCCCC--TTSTTCTTCCEEECTTSCCCCC----GGGGGCTTCSEEECCSSCCCCC---------------------
T ss_pred CcCCCCCCC--hhhccCCCCCEEEecCCCCCCC----ccccCCCccCEEECCCCccCCc---------------------
Confidence 777777662 2566777777777777776542 3455667777777777765421
Q ss_pred ccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCcc
Q 043523 526 ELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFG 605 (650)
Q Consensus 526 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~ 605 (650)
..+..++.|+.|+|++|.+.+..+ +..+++|+.|+|++|.+++. ..+.
T Consensus 147 ----------------------------~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~ 194 (605)
T 1m9s_A 147 ----------------------------TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALA 194 (605)
T ss_dssp ----------------------------GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGT
T ss_pred ----------------------------hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHc
Confidence 011345666777777777665544 66667777777777776643 3466
Q ss_pred CCCCCCeeeCCCCcCCccCCccccC
Q 043523 606 NLKQIESLDLSMNNLSGKIPAQLAS 630 (650)
Q Consensus 606 ~l~~L~~L~l~~n~i~~~~~~~l~~ 630 (650)
.+++|+.|++++|.++..+...+..
T Consensus 195 ~l~~L~~L~L~~N~l~~~p~~~~~~ 219 (605)
T 1m9s_A 195 GLKNLDVLELFSQECLNKPINHQSN 219 (605)
T ss_dssp TCTTCSEEECCSEEEECCCCCCCSS
T ss_pred cCCCCCEEEccCCcCcCCccccccc
Confidence 6777777777777666544433333
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=3.3e-17 Score=152.25 Aligned_cols=82 Identities=21% Similarity=0.187 Sum_probs=47.2
Q ss_pred CccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEc
Q 043523 391 TLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVL 470 (650)
Q Consensus 391 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 470 (650)
+.+.++++++.+. .+|.... ++|++|++++|.+++..+..|..+++|++|+|++|++..+.+..|..+++|++|++
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP---TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred eCCEeEccCCCcC-ccCCCCC---CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 4555666666655 4444311 45666666666666555555666666666666666665544455555566666666
Q ss_pred cCcccc
Q 043523 471 QSNNFS 476 (650)
Q Consensus 471 ~~n~~~ 476 (650)
++|+++
T Consensus 96 s~N~l~ 101 (229)
T 3e6j_A 96 GTNQLT 101 (229)
T ss_dssp CSSCCC
T ss_pred CCCcCC
Confidence 655554
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=1.2e-17 Score=167.09 Aligned_cols=184 Identities=22% Similarity=0.201 Sum_probs=147.7
Q ss_pred cEEecCCCcCCCCchhhhhccCCccEEEccCCccccccccccc-CCCcccEEECcCccccccCChhhhhccccCccEEEc
Q 043523 319 SYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVC-KGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNL 397 (650)
Q Consensus 319 ~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 397 (650)
+.+++++++++.+|..+ .+.++.|++++|.+.+..+..+. .+++|+.|++++|.+....+..+.... +|++|++
T Consensus 21 ~~l~c~~~~l~~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~--~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP--NLRYLDL 95 (361)
T ss_dssp TEEECCSSCCSSCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT--TCCEEEC
T ss_pred CEEEeCCCCcCccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC--CCCEEEC
Confidence 56777777777777655 45678888888888877777776 888899999999988865555555443 8999999
Q ss_pred cCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhh---hcCCCCCeEEccCcc
Q 043523 398 GRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWL---GNASSLQVLVLQSNN 474 (650)
Q Consensus 398 ~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~~~~L~~L~l~~n~ 474 (650)
++|.+. .++...|..+++|++|++++|++.+..+..|..+++|++|+|++|++..+.+..| ..+++|++|+|++|+
T Consensus 96 s~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 96 SSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CCCcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 999987 5666669999999999999999998888999999999999999999998666666 569999999999999
Q ss_pred cceecCCCCCCCCCCC--CCeeeCCCcccccccChHHH
Q 043523 475 FSGHISCPRNNVSWPL--LQIVDLASNKFSGRLSQKWL 510 (650)
Q Consensus 475 ~~~~~~~~~~~~~~~~--L~~L~l~~n~~~~~~~~~~~ 510 (650)
++... ...+..++. ++.|++++|++.|.+...|+
T Consensus 175 l~~l~--~~~~~~l~~~~l~~l~l~~N~~~C~C~l~~~ 210 (361)
T 2xot_A 175 LKKLP--LTDLQKLPAWVKNGLYLHNNPLECDCKLYQL 210 (361)
T ss_dssp CCCCC--HHHHHHSCHHHHTTEECCSSCEECCHHHHHH
T ss_pred CCccC--HHHhhhccHhhcceEEecCCCccCCcCcHHH
Confidence 87543 344556666 48899999999999887664
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=1.9e-17 Score=159.94 Aligned_cols=150 Identities=20% Similarity=0.334 Sum_probs=88.9
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCc
Q 043523 17 ILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLF 96 (650)
Q Consensus 17 ~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~ 96 (650)
++++++|+.|++++|.+... +.+..+++|++|++++|.+.+.. . +..+++|++|++++|.+++ . ..+.++++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIK-P-LANLKNLGWLFLDENKVKD-L-SSLKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCC
T ss_pred hhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCc-c-cccCCCCCEEECCCCcCCC-C-hhhccCCCCC
Confidence 34566677777777666433 34666667777777776666332 2 6666667777777666653 2 2366666666
Q ss_pred EEEccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCc
Q 043523 97 HMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQ 176 (650)
Q Consensus 97 ~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 176 (650)
+|++++|.+... +.+..+++|++|++++|.+++. . .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 116 ~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 116 SLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI--T-VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc--h-hhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 666666666543 4455566666666666666532 2 25566666666666666654432 5555555555555555
Q ss_pred CC
Q 043523 177 FE 178 (650)
Q Consensus 177 ~~ 178 (650)
+.
T Consensus 190 i~ 191 (291)
T 1h6t_A 190 IS 191 (291)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=2.1e-17 Score=175.01 Aligned_cols=194 Identities=18% Similarity=0.152 Sum_probs=132.1
Q ss_pred ccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEE
Q 043523 342 TEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILD 421 (650)
Q Consensus 342 l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 421 (650)
+..+.+..+.+.+.. .+..+.+|+.|++++|.+.. ++ .+.. +++|+.|++++|.+.+..+ +..+++|+.|+
T Consensus 23 l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~-l~-~l~~--l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~ 93 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQY--LPNVTKLFLNGNKLTDIKP---LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCC-CT-TGGG--CTTCCEEECTTSCCCCCGG---GGGCTTCCEEE
T ss_pred HHHHhccCCCccccc--chhcCCCCCEEECcCCCCCC-Ch-HHcc--CCCCCEEEeeCCCCCCChh---hccCCCCCEEE
Confidence 333444544444332 24566778888888887763 33 2322 3488888888888774333 77788888888
Q ss_pred cCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCccc
Q 043523 422 LGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKF 501 (650)
Q Consensus 422 ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 501 (650)
+++|.+.+ + ..+..+++|++|+|++|++.+. ..+..+++|+.|+|++|.+... ..+..+++|+.|+|++|.+
T Consensus 94 Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l----~~l~~l~~L~~L~Ls~N~l 165 (605)
T 1m9s_A 94 LDENKIKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSLEDNQI 165 (605)
T ss_dssp CCSSCCCC-C-TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC----GGGGSCTTCSEEECCSSCC
T ss_pred CcCCCCCC-C-hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc----hhhcccCCCCEEECcCCcC
Confidence 88888774 2 3677788888888888888763 3477788888888888887643 4566778888888888876
Q ss_pred ccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCcccc
Q 043523 502 SGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMG 581 (650)
Q Consensus 502 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~ 581 (650)
.+..+ +..++.|+.|+|++|.+.++ ..+.
T Consensus 166 ~~~~~-------------------------------------------------l~~l~~L~~L~Ls~N~i~~l--~~l~ 194 (605)
T 1m9s_A 166 SDIVP-------------------------------------------------LAGLTKLQNLYLSKNHISDL--RALA 194 (605)
T ss_dssp CCCGG-------------------------------------------------GTTCTTCCEEECCSSCCCBC--GGGT
T ss_pred CCchh-------------------------------------------------hccCCCCCEEECcCCCCCCC--hHHc
Confidence 53222 23567788888888888754 3577
Q ss_pred CCcCCCEEeCccccCcccCCcC
Q 043523 582 RFKSLYALNMSHNALTGSIPSS 603 (650)
Q Consensus 582 ~l~~L~~L~ls~n~i~~~~~~~ 603 (650)
.+++|+.|+|++|++++.....
T Consensus 195 ~l~~L~~L~L~~N~l~~~p~~~ 216 (605)
T 1m9s_A 195 GLKNLDVLELFSQECLNKPINH 216 (605)
T ss_dssp TCTTCSEEECCSEEEECCCCCC
T ss_pred cCCCCCEEEccCCcCcCCcccc
Confidence 7888888888888887543333
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=3.5e-17 Score=148.44 Aligned_cols=153 Identities=14% Similarity=0.232 Sum_probs=91.9
Q ss_pred CCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCC
Q 043523 413 RNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQ 492 (650)
Q Consensus 413 ~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~ 492 (650)
.+++|++|++++|.++ ..+ ++..+++|++|++++|.+.. +..+..+++|++|++++|+++... +..+..+++|+
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~--~~~l~~l~~L~ 115 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDK--IPNLSGLTSLT 115 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGG--SCCCTTCTTCC
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCccc--ChhhcCCCCCC
Confidence 3445666666666665 333 46666666667766665554 234566666777777666665433 33444555555
Q ss_pred eeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCcc
Q 043523 493 IVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNF 572 (650)
Q Consensus 493 ~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~ 572 (650)
+|++++|.++
T Consensus 116 ~L~Ls~n~i~---------------------------------------------------------------------- 125 (197)
T 4ezg_A 116 LLDISHSAHD---------------------------------------------------------------------- 125 (197)
T ss_dssp EEECCSSBCB----------------------------------------------------------------------
T ss_pred EEEecCCccC----------------------------------------------------------------------
Confidence 5555555443
Q ss_pred ccCCCccccCCcCCCEEeCcccc-CcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCcCcc
Q 043523 573 EGPIPEEMGRFKSLYALNMSHNA-LTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLVG 646 (650)
Q Consensus 573 ~~~~~~~~~~l~~L~~L~ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~~ 646 (650)
+..+..+..+++|++|++++|+ +++ .+ .+..+++|++|++++|.+++.. .+..+++|+.|++++|++.+
T Consensus 126 -~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 126 -DSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp -GGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred -cHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence 3334455666777777777776 553 33 5677777777777777777543 57777777777777777653
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.71 E-value=2.4e-16 Score=146.46 Aligned_cols=152 Identities=20% Similarity=0.216 Sum_probs=114.2
Q ss_pred CCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEccC
Q 043523 23 LETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSS 102 (650)
Q Consensus 23 L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~ 102 (650)
-+.++.+++.++.... .+. ++|++|+|++|.+.+..+..|..+++|++|++++|++....+..|.++++|++|++++
T Consensus 21 ~~~v~c~~~~l~~ip~-~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPA-GIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCS-CCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCC-CCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 4567777777644432 232 6788888888888766677788888888888888888755556677888888888888
Q ss_pred CcccccCCc-cccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCcCCC
Q 043523 103 NHFSGHIPS-LHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFEN 179 (650)
Q Consensus 103 ~~i~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 179 (650)
|+++..++. +..+++|++|++++|.++ .++.. +..+++|++|++++|.+....+..+..+++|+.|++++|.+..
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTT-GGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcc-cccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 888766654 456788888888888887 55555 5788888888888888887666778888888888888887763
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=2.1e-17 Score=156.99 Aligned_cols=170 Identities=19% Similarity=0.236 Sum_probs=124.7
Q ss_pred CccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEc
Q 043523 391 TLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVL 470 (650)
Q Consensus 391 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 470 (650)
+++.++++++.+.+. + .+..+++|++|++++|+++. .+ ++..+++|++|++++|++.+..+ +..+++|++|++
T Consensus 20 ~l~~l~l~~~~i~~~-~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDL-V--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHTCSCTTSE-E--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHhcCCCcccc-c--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 677778888887733 3 26778889999999998874 34 68888999999999999888554 788899999999
Q ss_pred cCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeecc
Q 043523 471 QSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKG 550 (650)
Q Consensus 471 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 550 (650)
++|++++.. . +.. ++|++|++++|.+.+..
T Consensus 93 ~~N~l~~l~---~-~~~-~~L~~L~L~~N~l~~~~--------------------------------------------- 122 (263)
T 1xeu_A 93 NRNRLKNLN---G-IPS-ACLSRLFLDNNELRDTD--------------------------------------------- 122 (263)
T ss_dssp CSSCCSCCT---T-CCC-SSCCEEECCSSCCSBSG---------------------------------------------
T ss_pred CCCccCCcC---c-ccc-CcccEEEccCCccCCCh---------------------------------------------
Confidence 999887543 1 222 78888888888765310
Q ss_pred chhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCC
Q 043523 551 VETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIP 625 (650)
Q Consensus 551 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~ 625 (650)
.+..++.|+.|++++|.++++. .+..+++|++|++++|++++. ..+..+++|++|++++|.++..+.
T Consensus 123 ----~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 123 ----SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp ----GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred ----hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCcc
Confidence 1235677778888888877552 577777888888888887754 567777788888888887775533
No 114
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=3.2e-17 Score=161.82 Aligned_cols=66 Identities=6% Similarity=-0.052 Sum_probs=54.1
Q ss_pred ccCCCccccCCcCCC-EEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEc
Q 043523 573 EGPIPEEMGRFKSLY-ALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNL 639 (650)
Q Consensus 573 ~~~~~~~~~~l~~L~-~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l 639 (650)
..+...+|.+|++|+ .+++.+ .++.+.+.+|.+|++|+.+++++|.++.+.+.+|.++++|+.++.
T Consensus 262 ~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 262 KTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 345666788888888 888888 777777888888888888888888888888888888888888763
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.69 E-value=3.5e-16 Score=163.62 Aligned_cols=150 Identities=25% Similarity=0.353 Sum_probs=95.4
Q ss_pred CCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEECcC
Q 043523 294 ISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDLSN 373 (650)
Q Consensus 294 l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 373 (650)
+++|+.|++++|.+++... ...+|++|++++|+++.+|. .+++|+.|++++|.+.+ +|. .+++|+.|++++
T Consensus 99 l~~L~~L~Ls~N~l~~ip~-l~~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~ 169 (571)
T 3cvr_A 99 PASLEYLDACDNRLSTLPE-LPASLKHLDVDNNQLTMLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRN 169 (571)
T ss_dssp CTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred cCCCCEEEccCCCCCCcch-hhcCCCEEECCCCcCCCCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCC
Confidence 3444444444444444221 22255556666666555554 25666666666666665 333 456777777777
Q ss_pred ccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCc-------cEEEcCCCccccccchhcccCCCCCEEeC
Q 043523 374 NNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGL-------QILDLGGNQLQGVVPKSLANCNMLQVLDL 446 (650)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L-------~~L~ls~~~i~~~~~~~~~~l~~L~~L~L 446 (650)
|.+++ +|. +. ++|++|++++|.++ .++. |.. +| +.|++++|.++ .+|..+..+++|+.|+|
T Consensus 170 N~L~~-lp~-l~----~~L~~L~Ls~N~L~-~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L 237 (571)
T 3cvr_A 170 NQLTF-LPE-LP----ESLEALDVSTNLLE-SLPA--VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIIL 237 (571)
T ss_dssp SCCSC-CCC-CC----TTCCEEECCSSCCS-SCCC--CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEEC
T ss_pred CCCCC-cch-hh----CCCCEEECcCCCCC-chhh--HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEe
Confidence 77764 554 32 37888888888877 5555 333 56 88999998888 56777777889999999
Q ss_pred CCCccccccchhhhcCCC
Q 043523 447 KNNHISDNFPCWLGNASS 464 (650)
Q Consensus 447 s~n~l~~~~~~~~~~~~~ 464 (650)
++|++.+..|..+..++.
T Consensus 238 ~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 238 EDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CSSSCCHHHHHHHHHHHH
T ss_pred eCCcCCCcCHHHHHHhhc
Confidence 999888877777766433
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=1.7e-16 Score=143.88 Aligned_cols=153 Identities=16% Similarity=0.262 Sum_probs=129.8
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCc
Q 043523 17 ILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLF 96 (650)
Q Consensus 17 ~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~ 96 (650)
.+++++|+.|++++|.+.+. +.+..+++|++|++++|.+. .+..+..+++|++|++++|++++..+..+.++++|+
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCC--TTGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCCccCh--HHHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 36788999999999998643 37888999999999999765 335788999999999999999977888999999999
Q ss_pred EEEccCCcccc-cCCccccCCCcCEEeCCCCc-CcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccC
Q 043523 97 HMDFSSNHFSG-HIPSLHKSRNLKYLDLSFNN-LSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSN 174 (650)
Q Consensus 97 ~L~l~~~~i~~-~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 174 (650)
+|++++|.+.. .+..+..+++|++|++++|. ++ .++ . +..+++|+.|++++|.+.+.. .+..+++|++|++++
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~-l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-P-LKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFS 190 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-G-GGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECB
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-h-hcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeC
Confidence 99999999986 34567888999999999998 65 444 3 899999999999999998643 788899999999999
Q ss_pred CcCC
Q 043523 175 NQFE 178 (650)
Q Consensus 175 ~~~~ 178 (650)
|.+.
T Consensus 191 N~i~ 194 (197)
T 4ezg_A 191 QTIG 194 (197)
T ss_dssp C---
T ss_pred cccC
Confidence 9875
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=4e-16 Score=148.11 Aligned_cols=161 Identities=16% Similarity=0.197 Sum_probs=89.0
Q ss_pred ecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccc
Q 043523 3 DLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFT 82 (650)
Q Consensus 3 ~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~ 82 (650)
+++++.++... .+.++++|+.|++++|.+++. +.+..+++|++|++++|.+.+. +. +..+++|++|++++|+++
T Consensus 25 ~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~ 98 (263)
T 1xeu_A 25 NLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL--AGMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLK 98 (263)
T ss_dssp HHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCS
T ss_pred HhcCCCccccc--chhhcCcCcEEECcCCCcccc--hHHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccC
Confidence 44555555332 455666666666666666433 2555566666666666666532 22 666666666666666665
Q ss_pred cCCCcCccCCCCCcEEEccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhcc
Q 043523 83 GPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLF 162 (650)
Q Consensus 83 ~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 162 (650)
+ .|. +.. ++|++|++++|.+... +.+..+++|++|++++|.+++. + . +..+++|+.|++++|.+.+. ..+.
T Consensus 99 ~-l~~-~~~-~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~Ls~N~i~~~-~-~-l~~l~~L~~L~L~~N~i~~~--~~l~ 169 (263)
T 1xeu_A 99 N-LNG-IPS-ACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSI-V-M-LGFLSKLEVLDLHGNEITNT--GGLT 169 (263)
T ss_dssp C-CTT-CCC-SSCCEEECCSSCCSBS-GGGTTCTTCCEEECTTSCCCBC-G-G-GGGCTTCCEEECTTSCCCBC--TTST
T ss_pred C-cCc-ccc-CcccEEEccCCccCCC-hhhcCcccccEEECCCCcCCCC-h-H-HccCCCCCEEECCCCcCcch--HHhc
Confidence 3 222 122 5666666666666543 3455556666666666665532 2 2 55556666666666655543 4455
Q ss_pred CCCCCCEEEccCCcCC
Q 043523 163 LLPNLETLWLSNNQFE 178 (650)
Q Consensus 163 ~l~~L~~L~l~~~~~~ 178 (650)
.+++|+.|++++|.+.
T Consensus 170 ~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 170 RLKKVNWIDLTGQKCV 185 (263)
T ss_dssp TCCCCCEEEEEEEEEE
T ss_pred cCCCCCEEeCCCCccc
Confidence 5555555555555444
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=9.2e-16 Score=138.13 Aligned_cols=142 Identities=27% Similarity=0.311 Sum_probs=122.6
Q ss_pred cEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeC
Q 043523 367 QVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDL 446 (650)
Q Consensus 367 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L 446 (650)
+.++++++.+. .+|..+.. ++++|++++|.+.+..+...|..+++|++|++++|++++..|.+|..+++|++|+|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~----~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL----HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT----TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCcC-cCccCCCC----CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 67788888775 55554322 88999999999885555556899999999999999999888999999999999999
Q ss_pred CCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHh
Q 043523 447 KNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEE 515 (650)
Q Consensus 447 s~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~ 515 (650)
++|++.+..+..|.++++|++|++++|++++.. +..+..+++|++|++++|++.+.++..|+..+..
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~ 152 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVM--PGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLR 152 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEEC--TTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHH
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeC--HHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHH
Confidence 999999988888999999999999999999876 7788899999999999999999999888766543
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=2.6e-15 Score=134.97 Aligned_cols=140 Identities=21% Similarity=0.252 Sum_probs=119.9
Q ss_pred cEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeC
Q 043523 367 QVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDL 446 (650)
Q Consensus 367 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L 446 (650)
+.++++++.+. .+|..+. +++++|++++|.+. .++ ..|..+++|++|++++|.+++..+.+|..+++|++|+|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~----~~l~~L~L~~n~i~-~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L 85 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP----RDVTELYLDGNQFT-LVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL 85 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC----TTCCEEECCSSCCC-SCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCCC-cCCCCCC----CCCCEEECCCCcCc-hhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEEC
Confidence 46777777766 5554332 38899999999987 666 45899999999999999999888888999999999999
Q ss_pred CCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHh
Q 043523 447 KNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEE 515 (650)
Q Consensus 447 s~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~ 515 (650)
++|++..+.+..|..+++|++|++++|+++... ...+..+++|+.|++++|++.|.+...|+..+..
T Consensus 86 s~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~ 152 (193)
T 2wfh_A 86 SYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP--EGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVK 152 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCC--TTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHH
T ss_pred CCCccCEeCHHHhCCCCCCCEEECCCCCCCeeC--hhhhhcCccccEEEeCCCCeecCCcCHHHHHHHH
Confidence 999999988889999999999999999998654 4567889999999999999999999999887654
No 120
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.63 E-value=1.6e-14 Score=145.27 Aligned_cols=87 Identities=11% Similarity=0.087 Sum_probs=65.5
Q ss_pred hcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCC-
Q 043523 554 MLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLN- 632 (650)
Q Consensus 554 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~- 632 (650)
..+..|++|+.+++.+ .+..+...+|.+|++|+.+.|..+ ++.+...+|.++ +|+.+++++|......+..|..++
T Consensus 294 ~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~ 370 (401)
T 4fdw_A 294 YCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPD 370 (401)
T ss_dssp TTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCT
T ss_pred HHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCC
Confidence 3445566666777663 355677778888888898888654 666778888888 899999988888877888888885
Q ss_pred CCCeEEccCCc
Q 043523 633 FLSVLNLSYNN 643 (650)
Q Consensus 633 ~L~~L~l~~n~ 643 (650)
.++.|.+..+.
T Consensus 371 ~l~~l~vp~~~ 381 (401)
T 4fdw_A 371 DITVIRVPAES 381 (401)
T ss_dssp TCCEEEECGGG
T ss_pred CccEEEeCHHH
Confidence 67888877654
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=3e-15 Score=147.65 Aligned_cols=103 Identities=16% Similarity=0.153 Sum_probs=90.2
Q ss_pred ccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCC-EEeCCCCccccccchhhhcCCCCCe
Q 043523 389 ETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQ-VLDLKNNHISDNFPCWLGNASSLQV 467 (650)
Q Consensus 389 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~~~~L~~ 467 (650)
.++|+.+++++|++. .++...|.+|.+|+.+++.+| ++.+...+|.+|++|+ .+++.+ .++.+.+.+|.+|++|++
T Consensus 225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 348999999999887 888888999999999999987 7777888999999999 999998 788888889999999999
Q ss_pred EEccCcccceecCCCCCCCCCCCCCeeeC
Q 043523 468 LVLQSNNFSGHISCPRNNVSWPLLQIVDL 496 (650)
Q Consensus 468 L~l~~n~~~~~~~~~~~~~~~~~L~~L~l 496 (650)
+++++|.++... ...+.+|++|+.++.
T Consensus 302 l~l~~n~i~~I~--~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 302 VLATGDKITTLG--DELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECSSCCCEEC--TTTTCTTCCCCEEEC
T ss_pred EEeCCCccCccc--hhhhcCCcchhhhcc
Confidence 999999988776 778889999998863
No 122
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.62 E-value=2.3e-14 Score=144.06 Aligned_cols=241 Identities=11% Similarity=0.090 Sum_probs=162.4
Q ss_pred CCccEEEccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccE
Q 043523 340 SETEYFFAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQI 419 (650)
Q Consensus 340 ~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 419 (650)
..++.+.+.+ .+..+....|.++ +|+.+.+..+ +......+|.. . +|+.+.+.. .+. .+....|..|.+|+.
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~--~L~~i~lp~-~l~-~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-S--TVQEIVFPS-TLE-QLKEDIFYYCYNLKK 184 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-C--CCCEEECCT-TCC-EECSSTTTTCTTCCE
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-C--CceEEEeCC-Ccc-EehHHHhhCcccCCe
Confidence 4444444443 2333333444443 4666666554 33233333333 1 566666664 333 556666777777777
Q ss_pred EEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCc
Q 043523 420 LDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASN 499 (650)
Q Consensus 420 L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n 499 (650)
+++.+|+++.....+|. +.+|+.+.+.++ +..+...+|.+|++|+++.+.++ ++... ...+.+ .+|+.+.+.++
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~--~~aF~~-~~L~~i~lp~~ 258 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIG--QEAFRE-SGITTVKLPNG 258 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEEC--TTTTTT-CCCSEEEEETT
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcc--cccccc-CCccEEEeCCC
Confidence 77777777755556665 567777777744 66666667777777777777764 33333 334444 56666666332
Q ss_pred ccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccc-----c
Q 043523 500 KFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFE-----G 574 (650)
Q Consensus 500 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~-----~ 574 (650)
+..+....+..|+.|+.+++.++.+. .
T Consensus 259 ------------------------------------------------i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~ 290 (401)
T 4fdw_A 259 ------------------------------------------------VTNIASRAFYYCPELAEVTTYGSTFNDDPEAM 290 (401)
T ss_dssp ------------------------------------------------CCEECTTTTTTCTTCCEEEEESSCCCCCTTCE
T ss_pred ------------------------------------------------ccEEChhHhhCCCCCCEEEeCCccccCCcccE
Confidence 22344455667888899988887765 5
Q ss_pred CCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCcCc
Q 043523 575 PIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNLV 645 (650)
Q Consensus 575 ~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~~ 645 (650)
+...+|.+|++|+.+.+.+ .++.+...+|.+|++|+.+++..+ ++.+.+.+|.++ +|+.+++++|...
T Consensus 291 I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 291 IHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp ECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred ECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 7778999999999999994 588788999999999999999655 888889999999 9999999999765
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=1e-17 Score=176.36 Aligned_cols=122 Identities=17% Similarity=0.167 Sum_probs=82.9
Q ss_pred CCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhh
Q 043523 440 MLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVA 519 (650)
Q Consensus 440 ~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~ 519 (650)
.|+.|+|++|.+++ +|. +..+++|++|++++|.++. ++..+.++++|+.|++++|.++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~---lp~~~~~l~~L~~L~Ls~N~l~----------------- 499 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRA---LPPALAALRCLEVLQASDNALE----------------- 499 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCC---CCGGGGGCTTCCEEECCSSCCC-----------------
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCcccccc---cchhhhcCCCCCEEECCCCCCC-----------------
Confidence 47788888888777 444 7777888888888887762 2445555555555555555432
Q ss_pred hcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCccc
Q 043523 520 ETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGS 599 (650)
Q Consensus 520 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~ 599 (650)
++ + .+..+++|+.|+|++|++++.
T Consensus 500 ------------------------------------------------------~l-p-~l~~l~~L~~L~Ls~N~l~~~ 523 (567)
T 1dce_A 500 ------------------------------------------------------NV-D-GVANLPRLQELLLCNNRLQQS 523 (567)
T ss_dssp ------------------------------------------------------CC-G-GGTTCSSCCEEECCSSCCCSS
T ss_pred ------------------------------------------------------CC-c-ccCCCCCCcEEECCCCCCCCC
Confidence 22 2 566677888888888888766
Q ss_pred C-CcCccCCCCCCeeeCCCCcCCccCCc---cccCCCCCCeEEc
Q 043523 600 I-PSSFGNLKQIESLDLSMNNLSGKIPA---QLASLNFLSVLNL 639 (650)
Q Consensus 600 ~-~~~~~~l~~L~~L~l~~n~i~~~~~~---~l~~l~~L~~L~l 639 (650)
. |..++.+++|++|++++|.+++.++. .+..+++|+.|++
T Consensus 524 ~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 524 AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp STTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 5 77788888888888888888766543 2345778887764
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=1.2e-16 Score=168.25 Aligned_cols=185 Identities=22% Similarity=0.242 Sum_probs=143.3
Q ss_pred CCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCc-------------cccccchhhhcCCCCCeEE-ccCcccce
Q 043523 412 PRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNH-------------ISDNFPCWLGNASSLQVLV-LQSNNFSG 477 (650)
Q Consensus 412 ~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~-------------l~~~~~~~~~~~~~L~~L~-l~~n~~~~ 477 (650)
..+++|+.|++++|+++ .+|..++.|++|++|++++|. ..+..|..+..+++|++|+ ++.|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 56778888999999887 678888888999999987774 4445667777788888887 55554321
Q ss_pred ecCCC---CCCC--CCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccch
Q 043523 478 HISCP---RNNV--SWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVE 552 (650)
Q Consensus 478 ~~~~~---~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 552 (650)
..... ..+. ....|+.|++++|.+++. +.
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-p~--------------------------------------------- 458 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CH--------------------------------------------- 458 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-CC---------------------------------------------
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCCC-cC---------------------------------------------
Confidence 11000 0000 013488899998877631 11
Q ss_pred hhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccC-CccccCC
Q 043523 553 TMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKI-PAQLASL 631 (650)
Q Consensus 553 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~l~~l 631 (650)
+..++.|+.|++++|.+. ..|..+..+++|+.|+|++|++++ +| .++.+++|++|++++|.+++.. |..+..+
T Consensus 459 ---~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l 532 (567)
T 1dce_A 459 ---LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSC 532 (567)
T ss_dssp ---GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGC
T ss_pred ---ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcC
Confidence 245788999999999999 557789999999999999999995 56 8999999999999999999887 9999999
Q ss_pred CCCCeEEccCCcCcccCC
Q 043523 632 NFLSVLNLSYNNLVGKIP 649 (650)
Q Consensus 632 ~~L~~L~l~~n~~~~~~p 649 (650)
++|+.|++++|++++..|
T Consensus 533 ~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 533 PRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp TTCCEEECTTSGGGGSSS
T ss_pred CCCCEEEecCCcCCCCcc
Confidence 999999999999997654
No 125
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.57 E-value=1.1e-13 Score=140.20 Aligned_cols=203 Identities=10% Similarity=0.083 Sum_probs=86.8
Q ss_pred CCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEccCCcccccCCcccc
Q 043523 35 QGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHK 114 (650)
Q Consensus 35 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~ 114 (650)
.++..+|.+|.+|+.+.+..+ ++..-..+|.++.+|+.+++..+ ++.....+|.++.+|+.+.+..+ +.......+.
T Consensus 61 sIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~ 137 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFK 137 (394)
T ss_dssp EECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred EhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeee
Confidence 334445555555555555432 33233344555555555555433 33334445555555555444332 1111111111
Q ss_pred CCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhcCCCCccE
Q 043523 115 SRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFENQLPEISNVSSSVLFD 194 (650)
Q Consensus 115 ~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 194 (650)
...+........ .. .+....|.++++|+.+.+..+. ......+|..+.+|+.+.+..+ +. .+.......+..|+.
T Consensus 138 ~~~~~~~~~~~~-~~-~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~ 212 (394)
T 4fs7_A 138 GCDFKEITIPEG-VT-VIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLEN 212 (394)
T ss_dssp TCCCSEEECCTT-CC-EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCB
T ss_pred cccccccccCcc-cc-ccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhccccccce
Confidence 112222222111 11 1122225556666666655432 2244455566666666666544 11 233334444555555
Q ss_pred EEccCCcCCCCCchhHhhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccCC
Q 043523 195 LDLSGNRLEGPVPISIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNN 257 (650)
Q Consensus 195 L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~ 257 (650)
+.+..+... +.... ....+|+.+.+... ++.+... .+..+..++.+.+..+
T Consensus 213 i~~~~~~~~--i~~~~-~~~~~l~~i~ip~~-~~~i~~~--------~f~~~~~l~~~~~~~~ 263 (394)
T 4fs7_A 213 MEFPNSLYY--LGDFA-LSKTGVKNIIIPDS-FTELGKS--------VFYGCTDLESISIQNN 263 (394)
T ss_dssp CCCCTTCCE--ECTTT-TTTCCCCEEEECTT-CCEECSS--------TTTTCSSCCEEEECCT
T ss_pred eecCCCceE--eehhh-cccCCCceEEECCC-ceecccc--------cccccccceeEEcCCC
Confidence 555443321 12222 33456666666432 1211111 1556666776666543
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=4.1e-15 Score=130.99 Aligned_cols=136 Identities=18% Similarity=0.134 Sum_probs=116.3
Q ss_pred cCCCCCCEEeCCCCCCCC-CCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCc
Q 043523 18 LQVPTLETLDLSENQLLQ-GSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLF 96 (650)
Q Consensus 18 ~~~~~L~~L~ls~~~i~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~ 96 (650)
...++|+.|++++|.+++ ..+..|..+++|++|++++|.+.+. ..+..+++|++|++++|++++..|..+.++++|+
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 345889999999999862 3344568899999999999999854 8899999999999999999977888888899999
Q ss_pred EEEccCCcccccC--CccccCCCcCEEeCCCCcCcccCC--hHHHhccccCCeEEccCCcCCC
Q 043523 97 HMDFSSNHFSGHI--PSLHKSRNLKYLDLSFNNLSGGIS--STFWEQLVNLNLVLLSHNSLNG 155 (650)
Q Consensus 97 ~L~l~~~~i~~~~--~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~L~~L~l~~~~~~~ 155 (650)
+|++++|.++..+ +.+..+++|++|++++|.+++... ...+..+++|+.|++++|.+..
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 9999999998765 578888999999999999985443 1348899999999999998773
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.56 E-value=2.9e-14 Score=128.30 Aligned_cols=127 Identities=21% Similarity=0.270 Sum_probs=71.2
Q ss_pred eecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCC-CCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCc
Q 043523 2 LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLP-NFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCN 80 (650)
Q Consensus 2 L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 80 (650)
+++++++++ .+|..+. +++++|++++|.+...... .|..+++|++|+|++|.+++..|..|..+++|++|++++|+
T Consensus 13 l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 13 VDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp EECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 455556555 3343332 2566666666665444332 35556666666666666665555566666666666666666
Q ss_pred cccCCCcCccCCCCCcEEEccCCcccccCC-ccccCCCcCEEeCCCCcCccc
Q 043523 81 FTGPIPPSMANLTQLFHMDFSSNHFSGHIP-SLHKSRNLKYLDLSFNNLSGG 131 (650)
Q Consensus 81 l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~~~l~~~ 131 (650)
+++..+..|.++++|++|++++|++....+ .+..+++|++|++++|.+...
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 665555556666666666666666655433 344455666666666655433
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=1.2e-14 Score=127.97 Aligned_cols=134 Identities=21% Similarity=0.240 Sum_probs=113.0
Q ss_pred CCcccEEEccCCcCc-CCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEccCCcccccCCcc-ccCCCcCEE
Q 043523 44 NSSLRNLILSGTGFS-GTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSL-HKSRNLKYL 121 (650)
Q Consensus 44 l~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~-~~~~~L~~L 121 (650)
.++|++|++++|.+. +.+|..+..+++|++|++++|.++.. ..+..+++|++|++++|.+...++.. ..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 478999999999987 67788889999999999999999855 78889999999999999998755544 458999999
Q ss_pred eCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcc---hhccCCCCCCEEEccCCcCCC
Q 043523 122 DLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIP---RSLFLLPNLETLWLSNNQFEN 179 (650)
Q Consensus 122 ~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~ 179 (650)
++++|.+++......+..+++|+.|++++|.+....+ ..+..+++|++|++++|.+..
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 9999999853332347899999999999999986655 578899999999999998763
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=1.3e-14 Score=124.87 Aligned_cols=129 Identities=18% Similarity=0.154 Sum_probs=95.0
Q ss_pred CCCCCCEEeCCCCCCC-CCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcE
Q 043523 19 QVPTLETLDLSENQLL-QGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFH 97 (650)
Q Consensus 19 ~~~~L~~L~ls~~~i~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~ 97 (650)
..++++.|++++|.++ ...+..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..|..+.++++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3467888888888876 23444667788888888888888744 67788888888888888888657777777888888
Q ss_pred EEccCCcccccC--CccccCCCcCEEeCCCCcCcccCC--hHHHhccccCCeEEcc
Q 043523 98 MDFSSNHFSGHI--PSLHKSRNLKYLDLSFNNLSGGIS--STFWEQLVNLNLVLLS 149 (650)
Q Consensus 98 L~l~~~~i~~~~--~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~L~~L~l~ 149 (650)
|++++|.+++.+ ..+..+++|++|++++|.+++... ...+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 888888887643 566777888888888887774433 1346777777777665
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=5e-14 Score=125.18 Aligned_cols=141 Identities=19% Similarity=0.213 Sum_probs=115.6
Q ss_pred ccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEe
Q 043523 366 FQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLD 445 (650)
Q Consensus 366 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~ 445 (650)
.+.++++++.+. .+|..+. ++|++|++++|++. .++...|..+++|++|++++|++++..+..|..+++|++|+
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~----~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP----SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY 82 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC----TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEEecCCCCc-cCCCCCC----CCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEE
Confidence 356777777765 4443332 38999999999988 56666689999999999999999977777789999999999
Q ss_pred CCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccC-hHHHHhHH
Q 043523 446 LKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLS-QKWLLTME 514 (650)
Q Consensus 446 Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~l~ 514 (650)
+++|+++...+..+..+++|++|++++|.++... ...+..+++|++|++++|++.+.++ ..++..+.
T Consensus 83 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~ 150 (177)
T 2o6r_A 83 LHENKLQSLPNGVFDKLTQLKELALDTNQLKSVP--DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 150 (177)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHH
T ss_pred CCCCCccccCHHHhhCCcccCEEECcCCcceEeC--HHHhcCCcccCEEEecCCCeeccCccHHHHHHHH
Confidence 9999999977778899999999999999998553 4456789999999999999998876 55555543
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=7.5e-15 Score=126.42 Aligned_cols=123 Identities=23% Similarity=0.193 Sum_probs=109.5
Q ss_pred CeecCCCCCc-ccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCC
Q 043523 1 TLDLSECGLQ-GKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRC 79 (650)
Q Consensus 1 ~L~l~~~~i~-~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~ 79 (650)
+|++++|.++ +..|..+..+++|++|++++|.++.. ..|..+++|++|++++|.+.+.+|..+..+++|++|++++|
T Consensus 21 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N 98 (149)
T 2je0_A 21 ELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN 98 (149)
T ss_dssp EEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS
T ss_pred EEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC
Confidence 3789999998 78888999999999999999999665 78999999999999999999768888888999999999999
Q ss_pred ccccC-CCcCccCCCCCcEEEccCCcccccCC----ccccCCCcCEEeCCC
Q 043523 80 NFTGP-IPPSMANLTQLFHMDFSSNHFSGHIP----SLHKSRNLKYLDLSF 125 (650)
Q Consensus 80 ~l~~~-~~~~l~~l~~L~~L~l~~~~i~~~~~----~~~~~~~L~~L~l~~ 125 (650)
.+++. .+..+..+++|++|++++|.+...++ .+..+++|++|++++
T Consensus 99 ~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 99 KIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred cCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99853 34789999999999999999998776 577889999999864
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.52 E-value=1.1e-13 Score=124.23 Aligned_cols=106 Identities=19% Similarity=0.160 Sum_probs=50.6
Q ss_pred CCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEcc
Q 043523 22 TLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFS 101 (650)
Q Consensus 22 ~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~ 101 (650)
+|++|++++|.++... ..|..+++|++|+|++|.+++..+..|.++++|++|++++|+++...+.+|.++++|++|+++
T Consensus 32 ~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 4555555555543222 344444555555555555544444445555555555555555554444445555555555555
Q ss_pred CCcccccCCc-cccCCCcCEEeCCCCcC
Q 043523 102 SNHFSGHIPS-LHKSRNLKYLDLSFNNL 128 (650)
Q Consensus 102 ~~~i~~~~~~-~~~~~~L~~L~l~~~~l 128 (650)
+|.+...++. +..+++|++|++++|.+
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 5555444332 33344455555554444
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.51 E-value=4e-15 Score=161.88 Aligned_cols=154 Identities=19% Similarity=0.188 Sum_probs=79.0
Q ss_pred ccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHH
Q 043523 430 VVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKW 509 (650)
Q Consensus 430 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 509 (650)
..+..+..++.|+.|+|++|.+.. ++..+..+++|++|+|++|.++. ++..+.++++|++|+|++|.++ .++..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~~---lp~~~~~l~~L~~L~Ls~N~l~-~lp~~- 288 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLTE---LPAEIKNLSNLRVLDLSHNRLT-SLPAE- 288 (727)
T ss_dssp -------CCCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCSC---CCGGGGGGTTCCEEECTTSCCS-SCCSS-
T ss_pred cChhhhccCCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCcc---cChhhhCCCCCCEEeCcCCcCC-ccChh-
Confidence 345556666666666666666654 33344466666666666666551 2444555555666666555544 11111
Q ss_pred HHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEE
Q 043523 510 LLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYAL 589 (650)
Q Consensus 510 ~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L 589 (650)
+..++.|++|+|++|.++ .++..+..+++|+.|
T Consensus 289 ----------------------------------------------~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L 321 (727)
T 4b8c_D 289 ----------------------------------------------LGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFL 321 (727)
T ss_dssp ----------------------------------------------GGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCE
T ss_pred ----------------------------------------------hcCCCCCCEEECCCCCCC-ccChhhhcCCCccEE
Confidence 123445555666666655 334457777777777
Q ss_pred eCccccCcccCCcCccCCCC-CCeeeCCCCcCCccCCccccCCCCCCeEEccCC
Q 043523 590 NMSHNALTGSIPSSFGNLKQ-IESLDLSMNNLSGKIPAQLASLNFLSVLNLSYN 642 (650)
Q Consensus 590 ~ls~n~i~~~~~~~~~~l~~-L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n 642 (650)
+|++|++++..|..+..+.. +..+++++|.+++.+|. .|+.|++++|
T Consensus 322 ~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 322 GVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp ECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred eCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 77777777766666554321 22467777777766663 4455556655
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.50 E-value=3.9e-13 Score=119.33 Aligned_cols=126 Identities=20% Similarity=0.214 Sum_probs=73.5
Q ss_pred eecCCCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCcc
Q 043523 2 LDLSECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNF 81 (650)
Q Consensus 2 L~l~~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l 81 (650)
+++++++++. .|..+ .++|+.|++++|+++......|..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 12 l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 12 IRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp EECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 4555555552 33222 25666666666666554444556666666666666666644444556666666666666666
Q ss_pred ccCCCcCccCCCCCcEEEccCCcccccCCcc-ccCCCcCEEeCCCCcCcc
Q 043523 82 TGPIPPSMANLTQLFHMDFSSNHFSGHIPSL-HKSRNLKYLDLSFNNLSG 130 (650)
Q Consensus 82 ~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~-~~~~~L~~L~l~~~~l~~ 130 (650)
++..+..+.++++|++|++++|.+...++.. ..+++|++|++++|.+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 6554555566666666666666666555433 445666666666666553
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=6e-14 Score=124.39 Aligned_cols=134 Identities=13% Similarity=0.072 Sum_probs=89.8
Q ss_pred ccccCCCCCCEEeCCCCCCCCCCCCCCCCCC-cccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCC
Q 043523 15 EKILQVPTLETLDLSENQLLQGSLPNFPKNS-SLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLT 93 (650)
Q Consensus 15 ~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~-~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~ 93 (650)
..+.++++|+.|++++|+++.. +.+..+. +|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i--~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSC--CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred HhcCCcCCceEEEeeCCCCchh--HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 3466778888888888887543 4455544 788888888887743 5677788888888888887754444457777
Q ss_pred CCcEEEccCCcccccCC--ccccCCCcCEEeCCCCcCcccCChH---HHhccccCCeEEccCCcC
Q 043523 94 QLFHMDFSSNHFSGHIP--SLHKSRNLKYLDLSFNNLSGGISST---FWEQLVNLNLVLLSHNSL 153 (650)
Q Consensus 94 ~L~~L~l~~~~i~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~---~~~~l~~L~~L~l~~~~~ 153 (650)
+|++|++++|.+...++ .+..+++|++|++++|.+.. ++.. .+..+++|+.|++++|..
T Consensus 89 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 89 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence 88888888877765554 56666777777777777652 2321 245555566665555543
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=1e-13 Score=122.94 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=20.7
Q ss_pred cccCCcCCCEEeCccccCcccCCc----CccCCCCCCeeeCCCCcC
Q 043523 579 EMGRFKSLYALNMSHNALTGSIPS----SFGNLKQIESLDLSMNNL 620 (650)
Q Consensus 579 ~~~~l~~L~~L~ls~n~i~~~~~~----~~~~l~~L~~L~l~~n~i 620 (650)
.+..+++|+.|++++|+++. .|. .++.+++|++||+++|..
T Consensus 108 ~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 108 PLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp GGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred hhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence 34445555555555555552 232 245555555555555544
No 137
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.47 E-value=1.5e-12 Score=131.86 Aligned_cols=89 Identities=11% Similarity=0.070 Sum_probs=73.3
Q ss_pred chhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccC
Q 043523 551 VETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLAS 630 (650)
Q Consensus 551 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~ 630 (650)
+....+..+..|+.+.+..+ +..+...+|.+|.+|+.+++..+ ++.+...+|.+|++|+.+++..+ ++.+...+|.+
T Consensus 288 i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~ 364 (394)
T 4fs7_A 288 VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQG 364 (394)
T ss_dssp ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTT
T ss_pred eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhC
Confidence 34455677888999988765 56677788999999999999754 77778889999999999999876 77788889999
Q ss_pred CCCCCeEEccCC
Q 043523 631 LNFLSVLNLSYN 642 (650)
Q Consensus 631 l~~L~~L~l~~n 642 (650)
|++|+.+++..+
T Consensus 365 C~~L~~i~lp~~ 376 (394)
T 4fs7_A 365 CINLKKVELPKR 376 (394)
T ss_dssp CTTCCEEEEEGG
T ss_pred CCCCCEEEECCC
Confidence 999999998765
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.44 E-value=3.8e-14 Score=154.13 Aligned_cols=192 Identities=18% Similarity=0.198 Sum_probs=104.2
Q ss_pred CCCCEEeCCCCCCCCCCCCCCCCCCcccEEE-----ccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCC
Q 043523 21 PTLETLDLSENQLLQGSLPNFPKNSSLRNLI-----LSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQL 95 (650)
Q Consensus 21 ~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~-----L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L 95 (650)
++++.|+|+++.+... ...+.....|+.+. +..+.+. ..++.+..+++|++|+|++|.+. .+|..+.++++|
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 4577788887777443 22222222333333 2233333 45677888888888888888887 667666788888
Q ss_pred cEEEccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccCCeEEccCCcCCCCcchhccCCCCCCEEEccCC
Q 043523 96 FHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNN 175 (650)
Q Consensus 96 ~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 175 (650)
++|+|++|.++.+++.+..+++|++|++++|.++ .++.. +..+++|++|++++|.+. .+|..+..+++|+.|++++|
T Consensus 250 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 250 TRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAE-LGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp SCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSS-GGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred CEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChh-hcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence 8888888888877767888888888888888887 56666 688888888888888887 55667888888888888888
Q ss_pred cCCCCCchhhhcCCCCccEEEccCCcCCCCCchhHhhcCCCCcEEeCCCC
Q 043523 176 QFENQLPEISNVSSSVLFDLDLSGNRLEGPVPISIIFELRNLYTLDLSSN 225 (650)
Q Consensus 176 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~~ 225 (650)
.+...++............+++++|.+.+.+|. .|..|+++.|
T Consensus 327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~-------~l~~l~l~~n 369 (727)
T 4b8c_D 327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH-------ERRFIEINTD 369 (727)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------C---------
T ss_pred ccCCCChHHHhhcchhhhHHhhccCcccCcCcc-------ccceeEeecc
Confidence 887655544322112223456777777655553 3445555554
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=7.9e-13 Score=116.07 Aligned_cols=118 Identities=19% Similarity=0.145 Sum_probs=98.5
Q ss_pred CccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEc
Q 043523 391 TLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVL 470 (650)
Q Consensus 391 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 470 (650)
..+.++++++.+. .++...+ ++|++|++++|++++..+..|..+++|++|+|++|++..+.+..|..+++|++|+|
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcC-ccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 4577888888877 5665432 67999999999999888888999999999999999999988888889999999999
Q ss_pred cCcccceecCCCCCCCCCCCCCeeeCCCcccccccC-hHHHHhHH
Q 043523 471 QSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLS-QKWLLTME 514 (650)
Q Consensus 471 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~l~ 514 (650)
++|+++... +..+..+++|++|++++|++.+.++ ..|+..|.
T Consensus 86 ~~N~l~~~~--~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l 128 (170)
T 3g39_A 86 NDNQLKSIP--RGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWI 128 (170)
T ss_dssp CSSCCCCCC--TTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHH
T ss_pred CCCccCEeC--HHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHH
Confidence 999998654 4568889999999999999999885 66665543
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=2.4e-12 Score=113.28 Aligned_cols=118 Identities=18% Similarity=0.112 Sum_probs=95.4
Q ss_pred ccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEcc
Q 043523 392 LGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQ 471 (650)
Q Consensus 392 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~ 471 (650)
-+.++++++.+. .+|.... ++|++|++++|++++..+..|..+++|++|+|++|++..+.+..|..+++|++|+|+
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 467788888776 6665432 679999999999987778889999999999999999998777778889999999999
Q ss_pred CcccceecCCCCCCCCCCCCCeeeCCCcccccccC-hHHHHhHHh
Q 043523 472 SNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLS-QKWLLTMEE 515 (650)
Q Consensus 472 ~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~l~~ 515 (650)
+|++.... ...+..+++|++|++++|++.+.+. ..++..|..
T Consensus 90 ~N~l~~l~--~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~ 132 (174)
T 2r9u_A 90 DNHLKSIP--RGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVA 132 (174)
T ss_dssp SSCCCCCC--TTTTTTCTTCSEEECCSSCBCTTBGGGHHHHHHHH
T ss_pred CCccceeC--HHHhccccCCCEEEeCCCCcccccccHHHHHHHHH
Confidence 99988553 4458889999999999999998875 666655543
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.37 E-value=2.7e-14 Score=142.19 Aligned_cols=113 Identities=15% Similarity=0.114 Sum_probs=67.3
Q ss_pred cCccEEEccCccCCCcCCCc---cc-CCCCCccEEEcCCCccccccchhc-ccCCCCCEEeCCCCccccccchhhh----
Q 043523 390 TTLGVLNLGRNNLNGTLSDT---IF-PRNCGLQILDLGGNQLQGVVPKSL-ANCNMLQVLDLKNNHISDNFPCWLG---- 460 (650)
Q Consensus 390 ~~L~~L~l~~~~~~~~~~~~---~~-~~l~~L~~L~ls~~~i~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~---- 460 (650)
+.|+.|++++|.+....... .+ ...++|++|++++|.+.......+ ..+++|++|+|++|.+++.....+.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 47888888888776322111 11 133578888888887765443333 2356778888888887764444442
Q ss_pred -cCCCCCeEEccCcccceec--CCCCCCCCCCCCCeeeCCCcccc
Q 043523 461 -NASSLQVLVLQSNNFSGHI--SCPRNNVSWPLLQIVDLASNKFS 502 (650)
Q Consensus 461 -~~~~L~~L~l~~n~~~~~~--~~~~~~~~~~~L~~L~l~~n~~~ 502 (650)
.+++|++|+|++|.++... .+...+..+++|++|+|++|.+.
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence 3567777777777765321 11222345566666666666654
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.37 E-value=6.8e-15 Score=133.36 Aligned_cols=83 Identities=20% Similarity=0.168 Sum_probs=50.0
Q ss_pred CcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCC-cCccCCCCCCeeeCCCCcCCccCCc----------cc
Q 043523 560 NIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIP-SSFGNLKQIESLDLSMNNLSGKIPA----------QL 628 (650)
Q Consensus 560 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~~----------~l 628 (650)
+.|++|++++|.+.++. .+..+++|+.|++++|++++..+ ..+..+++|++|++++|.+++..|. .+
T Consensus 93 ~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 93 DTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp HHCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred CcCCEEECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence 34455555555554321 45566777777777777764322 3566677777777777777655443 26
Q ss_pred cCCCCCCeEEccCCcCcc
Q 043523 629 ASLNFLSVLNLSYNNLVG 646 (650)
Q Consensus 629 ~~l~~L~~L~l~~n~~~~ 646 (650)
..+++|+.|| +|+++.
T Consensus 171 ~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 171 KRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHCSSCSEEC--CGGGTT
T ss_pred HhCCCcEEEC--CcccCH
Confidence 7777777776 565553
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.36 E-value=5.9e-12 Score=110.46 Aligned_cols=106 Identities=18% Similarity=0.171 Sum_probs=83.9
Q ss_pred CCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEccC
Q 043523 23 LETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSS 102 (650)
Q Consensus 23 L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~ 102 (650)
.+.++++++.++... ..+ .++|++|+|++|.+++..|..|..+++|++|++++|+++...+..|.++++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip-~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVP-TGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccC-ccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 578888888875543 333 27788888888888877778888888888888888888876667788888888888888
Q ss_pred CcccccCCc-cccCCCcCEEeCCCCcCccc
Q 043523 103 NHFSGHIPS-LHKSRNLKYLDLSFNNLSGG 131 (650)
Q Consensus 103 ~~i~~~~~~-~~~~~~L~~L~l~~~~l~~~ 131 (650)
|++...++. +..+++|++|++++|.+...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 888877764 66778888898888887644
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.35 E-value=5.4e-12 Score=111.03 Aligned_cols=106 Identities=18% Similarity=0.204 Sum_probs=83.3
Q ss_pred CCEEeCCCCCCCCCCCCCCCCCCcccEEEccCCcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEccC
Q 043523 23 LETLDLSENQLLQGSLPNFPKNSSLRNLILSGTGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSS 102 (650)
Q Consensus 23 L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~ 102 (650)
-+.++++++.+.... ..+. ++|++|+|++|.+.+..|..|.++++|++|++++|++++..+..|.++++|++|++++
T Consensus 14 ~~~l~~~~n~l~~iP-~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVP-AGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCC-SCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccC-CCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 367888888875443 3343 7888888888888877778888888888888888888866566678888888888888
Q ss_pred CcccccCCc-cccCCCcCEEeCCCCcCccc
Q 043523 103 NHFSGHIPS-LHKSRNLKYLDLSFNNLSGG 131 (650)
Q Consensus 103 ~~i~~~~~~-~~~~~~L~~L~l~~~~l~~~ 131 (650)
|++..+++. +..+++|++|++++|.+...
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 888877765 66788888888888887643
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.34 E-value=6.9e-14 Score=139.23 Aligned_cols=188 Identities=16% Similarity=0.094 Sum_probs=126.1
Q ss_pred CCccEEEcCCCccccccchhccc-----CCCCCEEeCCCCccccccchhhh-cCCCCCeEEccCcccceecC--CCCCC-
Q 043523 415 CGLQILDLGGNQLQGVVPKSLAN-----CNMLQVLDLKNNHISDNFPCWLG-NASSLQVLVLQSNNFSGHIS--CPRNN- 485 (650)
Q Consensus 415 ~~L~~L~ls~~~i~~~~~~~~~~-----l~~L~~L~Ls~n~l~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~--~~~~~- 485 (650)
+.|+.|++++|.++......+.. +++|++|+|++|.+.+.....+. .+++|++|+|++|.++.... +...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 46999999999988655444433 37999999999999875444443 47889999999999874320 11112
Q ss_pred CCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEE
Q 043523 486 VSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSI 565 (650)
Q Consensus 486 ~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 565 (650)
...+.|++|++++|.++......... .+...+.|++|
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~-------------------------------------------~L~~~~~L~~L 188 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLME-------------------------------------------GLAGNTSVTHL 188 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHH-------------------------------------------HHHTCSSCCEE
T ss_pred hcCCccceeeCCCCCCChHHHHHHHH-------------------------------------------HHhcCCCcCEE
Confidence 34688999999999875321111110 11246778999
Q ss_pred eCCCCccccCC----CccccCCcCCCEEeCccccCccc----CCcCccCCCCCCeeeCCCCcCCccCCccccCCCC----
Q 043523 566 DFSSNNFEGPI----PEEMGRFKSLYALNMSHNALTGS----IPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNF---- 633 (650)
Q Consensus 566 ~l~~~~~~~~~----~~~~~~l~~L~~L~ls~n~i~~~----~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~---- 633 (650)
+|++|.+.+.. ...+...++|++|+|++|.|++. +..++..+++|++|++++|.|+......+..+..
T Consensus 189 ~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~ 268 (372)
T 3un9_A 189 SLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEG 268 (372)
T ss_dssp ECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC-----
T ss_pred eCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCc
Confidence 99999987543 34566778999999999999863 3344556788999999999998766555554422
Q ss_pred -CCeEE--ccCCcCc
Q 043523 634 -LSVLN--LSYNNLV 645 (650)
Q Consensus 634 -L~~L~--l~~n~~~ 645 (650)
|+.+. +..|.++
T Consensus 269 ~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 269 GARVVVSLTEGTAVS 283 (372)
T ss_dssp -CEEECCCC----CH
T ss_pred cchhhHhhhcCCccC
Confidence 66666 6666554
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.32 E-value=9.5e-11 Score=118.49 Aligned_cols=333 Identities=9% Similarity=0.114 Sum_probs=187.3
Q ss_pred CChHHHhccc-cCCeEEccCCcCCCCcchhccCCCCCCEEEccCCcCC--CCCchhhhcCCCCccEEEccCCcCCCCCch
Q 043523 132 ISSTFWEQLV-NLNLVLLSHNSLNGSIPRSLFLLPNLETLWLSNNQFE--NQLPEISNVSSSVLFDLDLSGNRLEGPVPI 208 (650)
Q Consensus 132 ~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 208 (650)
+....|.+++ .|+.+.+..+ ++.+...+|.++.+|+.+.+..+... ..+....+..+..|+.+.+..+ +. .++.
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~ 130 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDS 130 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECT
T ss_pred cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehh
Confidence 3444477774 5999999764 66677889999999999998776422 1344556666778887777654 33 5666
Q ss_pred hHhhcCCCCcEEeCCCCccccccccCCCCCCCCCCCCCCCCcEEEccCCcCCCCCChhHHhhcCcccceeeecccccc-C
Q 043523 209 SIIFELRNLYTLDLSSNKFSRLRLASSKPRVIPILKNQSQLSGLDISNNQIPGEIPNWIWEVGNGNLNFLNLSHNLLV-S 287 (650)
Q Consensus 209 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~L~~L~l~~~~l~-~ 287 (650)
..|..+.+|+.+.+... +..+... .+..+..|+.+.+.++ +......++ . ..+|+.+.+...-.. .
T Consensus 131 ~aF~~c~~L~~i~lp~~-~~~I~~~--------~F~~c~~L~~i~~~~~-~~~I~~~aF-~--~~~l~~i~ip~~~~~i~ 197 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEG-VTSVADG--------MFSYCYSLHTVTLPDS-VTAIEERAF-T--GTALTQIHIPAKVTRIG 197 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTT--------TTTTCTTCCEEECCTT-CCEECTTTT-T--TCCCSEEEECTTCCEEC
T ss_pred hhhhhhcccccccccce-eeeeccc--------ceecccccccccccce-eeEeccccc-c--ccceeEEEECCcccccc
Confidence 77788888888888653 2222111 1677888888888764 221222222 1 134677666554211 1
Q ss_pred CcCcccCCcccEEEeccCcCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCccc
Q 043523 288 LQEPYSISSIRLLDLHSNQLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQ 367 (650)
Q Consensus 288 l~~~~~l~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~ 367 (650)
......+..+.................+ ..+...............+..+.+.. .+.......|..|..|+
T Consensus 198 ~~af~~c~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~ 268 (394)
T 4gt6_A 198 TNAFSECFALSTITSDSESYPAIDNVLY--------EKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLA 268 (394)
T ss_dssp TTTTTTCTTCCEEEECCSSSCBSSSCEE--------EECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCC
T ss_pred cchhhhccccceecccccccccccceee--------cccccccccccccccccccceEEcCC-cceEcccceeeeccccc
Confidence 1112224444444433322111000000 00000000000000012223333322 23334445677778888
Q ss_pred EEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCccccccchhcccCCCCCEEeCC
Q 043523 368 VLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQGVVPKSLANCNMLQVLDLK 447 (650)
Q Consensus 368 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls 447 (650)
.+.+.+.... ....++... +.|+.+.+.. .+. .++...|..|.+|+.+++..+ ++.+...+|.+|.+|+.+.|.
T Consensus 269 ~i~lp~~~~~-I~~~aF~~c--~~L~~i~l~~-~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 269 SVKMPDSVVS-IGTGAFMNC--PALQDIEFSS-RIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIP 342 (394)
T ss_dssp EEECCTTCCE-ECTTTTTTC--TTCCEEECCT-TCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred EEecccccce-ecCcccccc--cccccccCCC-ccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEEC
Confidence 8887655332 222333333 3788888753 333 677777999999999998764 665677889999999999997
Q ss_pred CCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCccc
Q 043523 448 NNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKF 501 (650)
Q Consensus 448 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 501 (650)
.+ ++.+...+|.+|.+|+.+++.++... ...+..+..|+.+.+..+.+
T Consensus 343 ~s-v~~I~~~aF~~C~~L~~i~~~~~~~~-----~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 343 SS-VTKIPESAFSNCTALNNIEYSGSRSQ-----WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TT-CCBCCGGGGTTCTTCCEEEESSCHHH-----HHTCBCCCCC----------
T ss_pred cc-cCEEhHhHhhCCCCCCEEEECCceee-----hhhhhccCCCCEEEeCCCCE
Confidence 65 77777788889999999999887654 23456677888888876643
No 147
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.28 E-value=7.7e-15 Score=132.99 Aligned_cols=133 Identities=23% Similarity=0.277 Sum_probs=89.1
Q ss_pred CCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEccCCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhccccC
Q 043523 64 SIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFSSNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQLVNL 143 (650)
Q Consensus 64 ~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L 143 (650)
.+..+++|++|++++|.+++ +| .+.++++|++|++++|.+..++..+..+++|++|++++|.+++ ++ . +..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~-l~-~-~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-LS-G-IEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC-HH-H-HHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc-CC-c-cccCCCC
Confidence 66677777777777777774 55 6777777777777777777655555556777788887777764 32 2 6777788
Q ss_pred CeEEccCCcCCCCcc-hhccCCCCCCEEEccCCcCCCCCch---------hhhcCCCCccEEEccCCcCC
Q 043523 144 NLVLLSHNSLNGSIP-RSLFLLPNLETLWLSNNQFENQLPE---------ISNVSSSVLFDLDLSGNRLE 203 (650)
Q Consensus 144 ~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~---------~~~~~~~~L~~L~l~~~~l~ 203 (650)
++|++++|.+..... ..+..+++|++|++++|.+....+. .....+++|+.|+ ++.+.
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 888888887775432 4677788888888888776533221 1233467777776 44443
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.26 E-value=5.8e-10 Score=112.69 Aligned_cols=305 Identities=10% Similarity=0.119 Sum_probs=157.5
Q ss_pred ccceeeeccccccCCcCcc--cCCcccEEEeccCc---C---CCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEE
Q 043523 274 NLNFLNLSHNLLVSLQEPY--SISSIRLLDLHSNQ---L---RGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYF 345 (650)
Q Consensus 274 ~L~~L~l~~~~l~~l~~~~--~l~~L~~L~l~~~~---l---~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l 345 (650)
.|+.+.+... ++.++... .+.+|+.+.+..+. + ....+..+.+|+.+.+.. .++.++...+..+.+|+.+
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~-~~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD-SVTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT-TCSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC-ccceehhhhhhhhcccccc
Confidence 3667766543 44443332 35677777766542 2 223344445555555433 2455555555566666666
Q ss_pred EccCCcccccccccccCCCcccEEECcCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCC
Q 043523 346 FAANNSLVGVIPESVCKGIYFQVLDLSNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGN 425 (650)
Q Consensus 346 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~ 425 (650)
.+... +.......+..+..|+.+.+.++ +......++.. ..|+.+.+...-. .+....|..+.+++.......
T Consensus 143 ~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~---~~l~~i~ip~~~~--~i~~~af~~c~~l~~~~~~~~ 215 (394)
T 4gt6_A 143 TIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG---TALTQIHIPAKVT--RIGTNAFSECFALSTITSDSE 215 (394)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT---CCCSEEEECTTCC--EECTTTTTTCTTCCEEEECCS
T ss_pred cccce-eeeecccceecccccccccccce-eeEeccccccc---cceeEEEECCccc--ccccchhhhccccceeccccc
Confidence 66543 33344445556666666666544 22122222221 1566666654321 334444666666666655444
Q ss_pred ccccccch-------------hcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCC
Q 043523 426 QLQGVVPK-------------SLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQ 492 (650)
Q Consensus 426 ~i~~~~~~-------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~ 492 (650)
........ .+.....+..+.+.+. +..+...+|.+|..|+.+.+.++.. ... ...+.+|+.|+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~-~I~--~~aF~~c~~L~ 291 (394)
T 4gt6_A 216 SYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVV-SIG--TGAFMNCPALQ 291 (394)
T ss_dssp SSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCC-EEC--TTTTTTCTTCC
T ss_pred ccccccceeecccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccc-eec--Ccccccccccc
Confidence 32211100 0111223334444322 3333445566666677666655432 222 44556666666
Q ss_pred eeeCCCcccccccChHHHHhHHhhHhhhcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCcc
Q 043523 493 IVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNF 572 (650)
Q Consensus 493 ~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~ 572 (650)
.+.+... +..+....+..|.+|+.++|..+ +
T Consensus 292 ~i~l~~~------------------------------------------------i~~I~~~aF~~c~~L~~i~lp~~-v 322 (394)
T 4gt6_A 292 DIEFSSR------------------------------------------------ITELPESVFAGCISLKSIDIPEG-I 322 (394)
T ss_dssp EEECCTT------------------------------------------------CCEECTTTTTTCTTCCEEECCTT-C
T ss_pred cccCCCc------------------------------------------------ccccCceeecCCCCcCEEEeCCc-c
Confidence 6666432 12233445566777778877654 5
Q ss_pred ccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCCcC
Q 043523 573 EGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYNNL 644 (650)
Q Consensus 573 ~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n~~ 644 (650)
..+...+|.+|.+|+.+.+..+ ++.+...+|.+|++|+.+++.++... ...+..+..|+.+.+..+.+
T Consensus 323 ~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 323 TQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred cEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 5566677777888888887643 66566777888888888887776543 14566677777777766543
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.20 E-value=7.6e-11 Score=117.21 Aligned_cols=119 Identities=21% Similarity=0.196 Sum_probs=100.5
Q ss_pred cEEEccCc-cCCCcCCCcccCCCCCccEEEcCC-CccccccchhcccCCCCCEEeCCCCccccccchhhhcCCCCCeEEc
Q 043523 393 GVLNLGRN-NLNGTLSDTIFPRNCGLQILDLGG-NQLQGVVPKSLANCNMLQVLDLKNNHISDNFPCWLGNASSLQVLVL 470 (650)
Q Consensus 393 ~~L~l~~~-~~~~~~~~~~~~~l~~L~~L~ls~-~~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 470 (650)
..++++++ .++ .+|. +..+++|++|+|++ |.+++..+..|..+++|++|+|++|++.++.+..|.++++|++|+|
T Consensus 11 ~~v~~~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 45678877 676 6776 88889999999996 9999777788999999999999999999988889999999999999
Q ss_pred cCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhH
Q 043523 471 QSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMM 517 (650)
Q Consensus 471 ~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~ 517 (650)
++|++.... +..+..++ |+.|++++|++.+.+...|+..+....
T Consensus 88 ~~N~l~~~~--~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~ 131 (347)
T 2ifg_A 88 SFNALESLS--WKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEG 131 (347)
T ss_dssp CSSCCSCCC--STTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTT
T ss_pred CCCccceeC--HHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhC
Confidence 999998553 33444444 999999999999999999998876543
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.15 E-value=6.5e-09 Score=104.55 Aligned_cols=83 Identities=12% Similarity=0.111 Sum_probs=62.7
Q ss_pred chhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCCccCCccccC
Q 043523 551 VETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLSGKIPAQLAS 630 (650)
Q Consensus 551 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~ 630 (650)
+....+..+.+|+.+.+.++.+..+...+|.+|.+|+.+.|..+ ++.+...+|.+|++|+.+.+..+ ++.+...+|.+
T Consensus 277 i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~ 354 (379)
T 4h09_A 277 VPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEG 354 (379)
T ss_dssp ECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred ccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhC
Confidence 34445567788888888888777777788888888888888754 66677788888888888888754 66677778877
Q ss_pred CCCCC
Q 043523 631 LNFLS 635 (650)
Q Consensus 631 l~~L~ 635 (650)
++.++
T Consensus 355 c~~~~ 359 (379)
T 4h09_A 355 SSITK 359 (379)
T ss_dssp SSCCC
T ss_pred CCCCc
Confidence 75443
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.06 E-value=5.6e-10 Score=110.91 Aligned_cols=114 Identities=15% Similarity=0.121 Sum_probs=89.4
Q ss_pred CEEeCCCC-CCCCCCCCCCCCCCcccEEEccC-CcCcCCCCCCCCCCCCCcEEEcCCCccccCCCcCccCCCCCcEEEcc
Q 043523 24 ETLDLSEN-QLLQGSLPNFPKNSSLRNLILSG-TGFSGTLPDSIGNLENLTWVEVRRCNFTGPIPPSMANLTQLFHMDFS 101 (650)
Q Consensus 24 ~~L~ls~~-~i~~~~~~~~~~l~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~l~ 101 (650)
..++++++ .++.. +. |..+++|++|+|++ |.+.+..+..|.++++|++|+|++|++++..|.+|.++++|++|+|+
T Consensus 11 ~~v~~~~~n~l~~i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSL-HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTT-TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCcc-CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 34688887 77543 33 88888899999986 88886666788999999999999999998888888999999999999
Q ss_pred CCcccccCCccccCCCcCEEeCCCCcCcccCChHHHhc
Q 043523 102 SNHFSGHIPSLHKSRNLKYLDLSFNNLSGGISSTFWEQ 139 (650)
Q Consensus 102 ~~~i~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 139 (650)
+|++..+++.++....|+.|++.+|.+...-...++..
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~ 126 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQR 126 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSCCCCCGGGHHHHH
T ss_pred CCccceeCHHHcccCCceEEEeeCCCccCCCccHHHHH
Confidence 99998887766665559999999998875443333433
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.00 E-value=2.2e-08 Score=100.61 Aligned_cols=285 Identities=11% Similarity=0.067 Sum_probs=178.4
Q ss_pred CCcccEEEeccC--cCCCCCCCCCCCccEEecCCCcCCCCchhhhhccCCccEEEccCCcccccccccccCCCcccEEEC
Q 043523 294 ISSIRLLDLHSN--QLRGNIPHMSTNTSYVDYSNNHFTFIPADIGNFMSETEYFFAANNSLVGVIPESVCKGIYFQVLDL 371 (650)
Q Consensus 294 l~~L~~L~l~~~--~l~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l 371 (650)
..+++.+.+... .+....+..|.+|+.+++.. .++.+....+..+ +++.+.+..+ +.......+..+ +|+.+.+
T Consensus 45 ~~~i~~v~ip~~vt~Ig~~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~l 120 (379)
T 4h09_A 45 RDRISEVRVNSGITSIGEANFNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEF 120 (379)
T ss_dssp GGGCSEEEECTTEEEECTTTTTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEEC
T ss_pred ccCCEEEEeCCCccChHHHHhhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccC
Confidence 456777777654 34555666777788888754 3667777777655 5666655543 333333334333 6777777
Q ss_pred cCccccccCChhhhhccccCccEEEccCccCCCcCCCcccCCCCCccEEEcCCCcccc------------ccchhcccCC
Q 043523 372 SNNNLSGTIPACLIAQSETTLGVLNLGRNNLNGTLSDTIFPRNCGLQILDLGGNQLQG------------VVPKSLANCN 439 (650)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~i~~------------~~~~~~~~l~ 439 (650)
.++- ......++... +++.+.+..+ +. .+....|..+..++...+....... .....+..+.
T Consensus 121 p~~~-~~i~~~~F~~~---~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (379)
T 4h09_A 121 PGAT-TEIGNYIFYNS---SVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAK 194 (379)
T ss_dssp CTTC-CEECTTTTTTC---CCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTC
T ss_pred CCcc-ccccccccccc---eeeeeeccce-ee-ccccchhcccccccccccccccceeecccceecccccceeccccccc
Confidence 6542 21222222221 4555555433 22 4445556677777777665543211 1122334445
Q ss_pred CCCEEeCCCCccccccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHhhHhh
Q 043523 440 MLQVLDLKNNHISDNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVA 519 (650)
Q Consensus 440 ~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~ 519 (650)
.+..+.+..... ......+..+..|+.+.+..+ +.... ...+.++..|+.+.+..+
T Consensus 195 ~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~--~~~f~~~~~L~~i~lp~~-------------------- 250 (379)
T 4h09_A 195 TGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLG--DGAFYGMKALDEIAIPKN-------------------- 250 (379)
T ss_dssp CCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEEC--TTTTTTCSSCCEEEECTT--------------------
T ss_pred ccccccccccee-EEeecccccccccceeeeccc-eeEEc--cccccCCccceEEEcCCC--------------------
Confidence 555555554422 223445566677777766544 22222 445566666766666553
Q ss_pred hcccCcccccceeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCCccccCCcCCCEEeCccccCccc
Q 043523 520 ETKSGSELKHLRYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHNALTGS 599 (650)
Q Consensus 520 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~ 599 (650)
+..+....+..+..++.+.+..+ +..+...+|.+|.+|+.+.+.++.++.+
T Consensus 251 ----------------------------v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I 301 (379)
T 4h09_A 251 ----------------------------VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETL 301 (379)
T ss_dssp ----------------------------CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEE
T ss_pred ----------------------------ccEeCccccceeehhcccccccc-ceecccccccccccccccccccccccee
Confidence 22334445567888888888654 5557778899999999999999999988
Q ss_pred CCcCccCCCCCCeeeCCCCcCCccCCccccCCCCCCeEEccCC
Q 043523 600 IPSSFGNLKQIESLDLSMNNLSGKIPAQLASLNFLSVLNLSYN 642 (650)
Q Consensus 600 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~n 642 (650)
...+|.+|.+|+.+++..+ ++.+...+|.+|++|+.+.+..+
T Consensus 302 ~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 302 EPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred hhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 8999999999999999854 77788899999999999998654
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.85 E-value=1.7e-09 Score=106.38 Aligned_cols=84 Identities=14% Similarity=0.194 Sum_probs=53.7
Q ss_pred CCCcccEEeCCCCccccCCCcccc---CCcCCCEEeCccccCccc----CCcCccCCCCCCeeeCCCCcCCccCCccccC
Q 043523 558 VPNIFTSIDFSSNNFEGPIPEEMG---RFKSLYALNMSHNALTGS----IPSSFGNLKQIESLDLSMNNLSGKIPAQLAS 630 (650)
Q Consensus 558 ~~~~l~~L~l~~~~~~~~~~~~~~---~l~~L~~L~ls~n~i~~~----~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~ 630 (650)
.+|+|+.|++.+|.+.+.....+. .+++|++|+|+.|.+++. ++..+..+++|+.|++++|.++......++.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 467888888888877643222222 467888888888887753 2333455678888888888777554444443
Q ss_pred -CCCCCeEEccCCc
Q 043523 631 -LNFLSVLNLSYNN 643 (650)
Q Consensus 631 -l~~L~~L~l~~n~ 643 (650)
+ ...++++.++
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 3 4567777665
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.79 E-value=1.1e-09 Score=107.89 Aligned_cols=181 Identities=15% Similarity=0.145 Sum_probs=108.3
Q ss_pred ccCccEEEccCccCCC----cC----CCcccCCCCCccEEEcCCCc-cccccchhcccCCCCCEEeCCCCccccccchhh
Q 043523 389 ETTLGVLNLGRNNLNG----TL----SDTIFPRNCGLQILDLGGNQ-LQGVVPKSLANCNMLQVLDLKNNHISDNFPCWL 459 (650)
Q Consensus 389 ~~~L~~L~l~~~~~~~----~~----~~~~~~~l~~L~~L~ls~~~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 459 (650)
+++|+.|.+......+ .+ ....+..+++|+.|++++|. +. .+. + .+++|+.|+|..|.+.......+
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~--l~~-~-~~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS--IGK-K-PRPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB--CCS-C-BCTTCSEEEEECSBCCHHHHHHH
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce--ecc-c-cCCCCcEEEEecCCCChHHHHHH
Confidence 3488999886643210 00 11234567888888888873 22 222 3 37888888888888776444445
Q ss_pred h--cCCCCCeEEccC--cccceec---CCCCCC--CCCCCCCeeeCCCcccccccChHHHHhHHhhHhhhcccCcccccc
Q 043523 460 G--NASSLQVLVLQS--NNFSGHI---SCPRNN--VSWPLLQIVDLASNKFSGRLSQKWLLTMEEMMVAETKSGSELKHL 530 (650)
Q Consensus 460 ~--~~~~L~~L~l~~--n~~~~~~---~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l 530 (650)
. .+|+|++|+|+. +...... .+...+ ..+|+|++|++++|.+.+.....
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~---------------------- 271 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM---------------------- 271 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH----------------------
T ss_pred HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH----------------------
Confidence 4 688888888753 2211110 111122 34788888888888764211100
Q ss_pred eeeccCCceeecceEEeeccchhhcccCCCcccEEeCCCCccccCCC----ccccCCcCCCEEeCccccCcccCCcCccC
Q 043523 531 RYVISSNQFYEVGVTVTVKGVETMLLKVPNIFTSIDFSSNNFEGPIP----EEMGRFKSLYALNMSHNALTGSIPSSFGN 606 (650)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~----~~~~~l~~L~~L~ls~n~i~~~~~~~~~~ 606 (650)
+. ....++.|++|+|+.|.+.+... ..+..+++|+.|++++|.|++.....+..
T Consensus 272 --------------------la--~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 272 --------------------FL--ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp --------------------HH--HCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred --------------------HH--hCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 11 11346788888888888775432 23355688888888888888654444443
Q ss_pred -CCCCCeeeCCCCc
Q 043523 607 -LKQIESLDLSMNN 619 (650)
Q Consensus 607 -l~~L~~L~l~~n~ 619 (650)
+ ...+++++++
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 2 3457777776
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.55 E-value=3.9e-08 Score=87.17 Aligned_cols=111 Identities=19% Similarity=0.129 Sum_probs=49.5
Q ss_pred CccEEEccCc-cCCCcCC---CcccCCCCCccEEEcCCCcccccc----chhcccCCCCCEEeCCCCcccccc----chh
Q 043523 391 TLGVLNLGRN-NLNGTLS---DTIFPRNCGLQILDLGGNQLQGVV----PKSLANCNMLQVLDLKNNHISDNF----PCW 458 (650)
Q Consensus 391 ~L~~L~l~~~-~~~~~~~---~~~~~~l~~L~~L~ls~~~i~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~----~~~ 458 (650)
.|++|++++| .+.+.-. ...+...++|++|++++|.+.+.+ ..++...++|++|+|++|.+.+.. ...
T Consensus 37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~ 116 (185)
T 1io0_A 37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA 116 (185)
T ss_dssp TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence 5555666555 5442210 111334455555555555554322 223334455555555555555422 223
Q ss_pred hhcCCCCCeEEc--cCcccceec--CCCCCCCCCCCCCeeeCCCccc
Q 043523 459 LGNASSLQVLVL--QSNNFSGHI--SCPRNNVSWPLLQIVDLASNKF 501 (650)
Q Consensus 459 ~~~~~~L~~L~l--~~n~~~~~~--~~~~~~~~~~~L~~L~l~~n~~ 501 (650)
+...++|++|+| ++|.+.... .+...+...+.|++|++++|.+
T Consensus 117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 334455555555 445544221 0122233334455555555544
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.53 E-value=1.4e-08 Score=87.19 Aligned_cols=87 Identities=14% Similarity=0.077 Sum_probs=75.0
Q ss_pred CCcccEEeCCCCccccCCCccccCCcCCCEEeCccc-cCcccCCcCccCC----CCCCeeeCCCCc-CCccCCccccCCC
Q 043523 559 PNIFTSIDFSSNNFEGPIPEEMGRFKSLYALNMSHN-ALTGSIPSSFGNL----KQIESLDLSMNN-LSGKIPAQLASLN 632 (650)
Q Consensus 559 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ls~n-~i~~~~~~~~~~l----~~L~~L~l~~n~-i~~~~~~~l~~l~ 632 (650)
...|++||+++|.++......+.++++|+.|+|++| .|++.....+..+ ++|++|++++|. |++..-..+++++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 356999999999998887888899999999999999 4887766667664 489999999995 8887777889999
Q ss_pred CCCeEEccCCcCc
Q 043523 633 FLSVLNLSYNNLV 645 (650)
Q Consensus 633 ~L~~L~l~~n~~~ 645 (650)
+|+.|++++|+..
T Consensus 140 ~L~~L~L~~c~~I 152 (176)
T 3e4g_A 140 NLKYLFLSDLPGV 152 (176)
T ss_dssp TCCEEEEESCTTC
T ss_pred CCCEEECCCCCCC
Confidence 9999999999743
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.52 E-value=1.9e-08 Score=89.23 Aligned_cols=121 Identities=13% Similarity=0.155 Sum_probs=85.4
Q ss_pred cccccCCCcccEEECcCc-cccccCChhhhh--ccccCccEEEccCccCCCcCC---CcccCCCCCccEEEcCCCccccc
Q 043523 357 PESVCKGIYFQVLDLSNN-NLSGTIPACLIA--QSETTLGVLNLGRNNLNGTLS---DTIFPRNCGLQILDLGGNQLQGV 430 (650)
Q Consensus 357 ~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~---~~~~~~l~~L~~L~ls~~~i~~~ 430 (650)
...+...+.|++|++++| .+.......+.. ...++|++|++++|.+.+... ...+...++|++|++++|.|.+.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 345556777888888887 765432222211 112378888888888764321 12245667899999999999865
Q ss_pred ----cchhcccCCCCCEEeC--CCCccccccc----hhhhcCCCCCeEEccCcccce
Q 043523 431 ----VPKSLANCNMLQVLDL--KNNHISDNFP----CWLGNASSLQVLVLQSNNFSG 477 (650)
Q Consensus 431 ----~~~~~~~l~~L~~L~L--s~n~l~~~~~----~~~~~~~~L~~L~l~~n~~~~ 477 (650)
+..++...++|++|+| ++|.+++... ..+...++|++|++++|.+..
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 3566778899999999 8899987443 455667999999999999863
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.49 E-value=2.7e-08 Score=85.30 Aligned_cols=83 Identities=13% Similarity=0.080 Sum_probs=41.7
Q ss_pred CccEEEcCCCccccccchhcccCCCCCEEeCCCCc-cccccchhhhcC----CCCCeEEccCcc-cceecCCCCCCCCCC
Q 043523 416 GLQILDLGGNQLQGVVPKSLANCNMLQVLDLKNNH-ISDNFPCWLGNA----SSLQVLVLQSNN-FSGHISCPRNNVSWP 489 (650)
Q Consensus 416 ~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~----~~L~~L~l~~n~-~~~~~~~~~~~~~~~ 489 (650)
.|+.||+++|.++..+...+..|++|++|+|++|. +++.....+..+ ++|++|+|++|. +++.. ...+..++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G--l~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG--IIALHHFR 139 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH--HHHGGGCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH--HHHHhcCC
Confidence 35555555555554444455555555555555553 444444444432 355555555554 33222 22334455
Q ss_pred CCCeeeCCCcc
Q 043523 490 LLQIVDLASNK 500 (650)
Q Consensus 490 ~L~~L~l~~n~ 500 (650)
+|++|++++|+
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 56666665554
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.20 E-value=3e-07 Score=85.40 Aligned_cols=80 Identities=23% Similarity=0.211 Sum_probs=55.9
Q ss_pred cCCCcccEEeCCCCccccCC--CccccCCcCCCEEeCccccCcccCCcCccCCC--CCCeeeCCCCcCCccCC-------
Q 043523 557 KVPNIFTSIDFSSNNFEGPI--PEEMGRFKSLYALNMSHNALTGSIPSSFGNLK--QIESLDLSMNNLSGKIP------- 625 (650)
Q Consensus 557 ~~~~~l~~L~l~~~~~~~~~--~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~--~L~~L~l~~n~i~~~~~------- 625 (650)
..++.|+.|+|++|.+.++. +..+..+++|+.|+|++|+|++. +.+..+. +|++|++++|.+++..|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 56778888888888887643 34556778888888888888753 2233333 78888888888875443
Q ss_pred ccccCCCCCCeEE
Q 043523 626 AQLASLNFLSVLN 638 (650)
Q Consensus 626 ~~l~~l~~L~~L~ 638 (650)
..+..+|+|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 3467778888776
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.06 E-value=3e-06 Score=78.75 Aligned_cols=67 Identities=27% Similarity=0.325 Sum_probs=55.9
Q ss_pred cCCcCCCEEeCccccCcc--cCCcCccCCCCCCeeeCCCCcCCccCCccccCCC--CCCeEEccCCcCcccCC
Q 043523 581 GRFKSLYALNMSHNALTG--SIPSSFGNLKQIESLDLSMNNLSGKIPAQLASLN--FLSVLNLSYNNLVGKIP 649 (650)
Q Consensus 581 ~~l~~L~~L~ls~n~i~~--~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~--~L~~L~l~~n~~~~~~p 649 (650)
..+++|+.|+|++|+|++ .++..++.+++|+.|+|++|.+++. +.+..+. +|+.|++++|++.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 568999999999999997 3446667899999999999999976 3344444 99999999999998776
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.57 E-value=6.8e-05 Score=65.57 Aligned_cols=110 Identities=9% Similarity=0.054 Sum_probs=56.8
Q ss_pred CccEEEccCc-cCCCcC---CCcccCCCCCccEEEcCCCccccccc----hhcccCCCCCEEeCCCCccccccch----h
Q 043523 391 TLGVLNLGRN-NLNGTL---SDTIFPRNCGLQILDLGGNQLQGVVP----KSLANCNMLQVLDLKNNHISDNFPC----W 458 (650)
Q Consensus 391 ~L~~L~l~~~-~~~~~~---~~~~~~~l~~L~~L~ls~~~i~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~----~ 458 (650)
.|+.|+++++ .+.+.- ....+...+.|+.|+|++|+|.+... +++...+.|++|+|++|.|++.... .
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a 121 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS 121 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence 6777777764 544221 11124455567777777776654432 3344556677777777766653332 2
Q ss_pred hhcCCCCCeEEccCc---ccceec--CCCCCCCCCCCCCeeeCCCcc
Q 043523 459 LGNASSLQVLVLQSN---NFSGHI--SCPRNNVSWPLLQIVDLASNK 500 (650)
Q Consensus 459 ~~~~~~L~~L~l~~n---~~~~~~--~~~~~~~~~~~L~~L~l~~n~ 500 (650)
+..-+.|++|+|++| .+.... .+...+..-+.|++|+++.|.
T Consensus 122 L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 122 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 333455666666644 222110 012333444566666665554
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.39 E-value=5.5e-05 Score=66.16 Aligned_cols=115 Identities=10% Similarity=0.128 Sum_probs=76.1
Q ss_pred ccCCCcccEEECcCc-ccccc----CChhhhhccccCccEEEccCccCCCcCCCc---ccCCCCCccEEEcCCCcccccc
Q 043523 360 VCKGIYFQVLDLSNN-NLSGT----IPACLIAQSETTLGVLNLGRNNLNGTLSDT---IFPRNCGLQILDLGGNQLQGVV 431 (650)
Q Consensus 360 l~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~l~~L~~L~ls~~~i~~~~ 431 (650)
+..-+.|++|+++++ .+.+. +...+.. -+.|+.|+|++|.+.+..... .+...+.|++|+|++|.|...+
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~--N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACN--SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTT--CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhh--CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 344566777777764 55432 2222222 237888888888776432221 2446678999999999998653
Q ss_pred ----chhcccCCCCCEEeCCCC---ccccc----cchhhhcCCCCCeEEccCcccc
Q 043523 432 ----PKSLANCNMLQVLDLKNN---HISDN----FPCWLGNASSLQVLVLQSNNFS 476 (650)
Q Consensus 432 ----~~~~~~l~~L~~L~Ls~n---~l~~~----~~~~~~~~~~L~~L~l~~n~~~ 476 (650)
.+++...+.|++|+|++| .+.+. +...+..-+.|++|+++.|.+.
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 355667788999999876 44542 3345667899999999887654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.24 E-value=0.00053 Score=55.97 Aligned_cols=68 Identities=19% Similarity=0.203 Sum_probs=45.5
Q ss_pred EEeCCCCccc--cccchhhhcCCCCCeEEccCcccceecCCCCCCCCCCCCCeeeCCCcccccccChHHHHhHHh
Q 043523 443 VLDLKNNHIS--DNFPCWLGNASSLQVLVLQSNNFSGHISCPRNNVSWPLLQIVDLASNKFSGRLSQKWLLTMEE 515 (650)
Q Consensus 443 ~L~Ls~n~l~--~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~ 515 (650)
.++.+++.++ . +|..+ .++|++|+|++|+++... ...+..+++|+.|+|++|++.+.+...|+..+..
T Consensus 12 ~v~Cs~~~L~~~~-vP~~l--p~~l~~L~Ls~N~l~~l~--~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~ 81 (130)
T 3rfe_A 12 LVDCGRRGLTWAS-LPTAF--PVDTTELVLTGNNLTALP--PGLLDALPALRTAHLGANPWRCDCRLVPLRAWLA 81 (130)
T ss_dssp EEECCSSCCCTTT-SCSCC--CTTCSEEECTTSCCSSCC--TTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHH
T ss_pred EEEeCCCCCcccc-CCCCC--CcCCCEEECCCCcCCccC--hhhhhhccccCEEEecCCCeeccCccHHHHHHHH
Confidence 5555666555 3 33221 345667777777666544 4556677788888999999999999988877654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.14 E-value=0.00088 Score=54.67 Aligned_cols=55 Identities=16% Similarity=0.183 Sum_probs=29.3
Q ss_pred EEeCCCCccc--cCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCCcCC
Q 043523 564 SIDFSSNNFE--GPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMNNLS 621 (650)
Q Consensus 564 ~L~l~~~~~~--~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n~i~ 621 (650)
.++.+++.++ .+.. .+. ++|++|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~-~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT-AFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCS-CCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCC-CCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5566666554 2221 111 35666666666666555555555666666666666553
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=87.72 E-value=1.6 Score=33.13 Aligned_cols=49 Identities=16% Similarity=0.111 Sum_probs=35.0
Q ss_pred CCCCcccccccccCCCCCCEEeCCCCCCCCCCCCCCCCCCcccEEEccCC
Q 043523 6 ECGLQGKFPEKILQVPTLETLDLSENQLLQGSLPNFPKNSSLRNLILSGT 55 (650)
Q Consensus 6 ~~~i~~~~~~~~~~~~~L~~L~ls~~~i~~~~~~~~~~l~~L~~L~L~~~ 55 (650)
+-.++.+...+|..|+.|+.+.+-.+ ++.+...+|.+|.+|+.+.+...
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 44567677777777777777777665 45667777777777777777654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=82.83 E-value=1.5 Score=33.16 Aligned_cols=49 Identities=12% Similarity=0.072 Sum_probs=39.7
Q ss_pred CCccccCCCccccCCcCCCEEeCccccCcccCCcCccCCCCCCeeeCCCC
Q 043523 569 SNNFEGPIPEEMGRFKSLYALNMSHNALTGSIPSSFGNLKQIESLDLSMN 618 (650)
Q Consensus 569 ~~~~~~~~~~~~~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~l~~n 618 (650)
+..++.+...+|.+|.+|+.+.|-.+ ++.+...+|.+|.+|+.+.+.+.
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 44566677888999999999999874 55578889999999999988765
Done!