Query 043529
Match_columns 307
No_of_seqs 108 out of 1102
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 09:53:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043529.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043529hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3swz_A Steroid 17-alpha-hydrox 100.0 1.3E-38 4.3E-43 296.2 20.6 272 31-307 5-288 (494)
2 3pm0_A Cypib1, cytochrome P450 100.0 1.2E-36 4.1E-41 283.4 16.8 273 31-307 6-294 (507)
3 3e6i_A CYPIIE1, P450-J, cytoch 100.0 4.8E-35 1.6E-39 270.6 21.4 268 31-307 7-282 (476)
4 3qz1_A Steroid 21-hydroxylase; 100.0 3.1E-36 1E-40 280.1 13.3 269 25-307 20-294 (496)
5 2hi4_A Cytochrome P450 1A2; CY 100.0 4.7E-35 1.6E-39 272.3 18.5 269 33-307 13-297 (495)
6 3tbg_A Cytochrome P450 2D6; mo 100.0 2.5E-34 8.7E-39 265.8 21.6 272 31-307 7-287 (479)
7 3czh_A Cytochrome P450 2R1; vi 100.0 1.1E-34 3.8E-39 268.9 17.5 270 32-307 10-288 (481)
8 1po5_A Cytochrome P450 2B4; ox 100.0 7.8E-34 2.7E-38 262.8 20.1 267 33-307 9-283 (476)
9 2fdv_A Cytochrome P450 2A6; CY 100.0 6.8E-34 2.3E-38 263.2 19.0 267 33-307 9-283 (476)
10 1r9o_A Cytochrome P450 2C9; mo 100.0 5.6E-34 1.9E-38 263.8 18.2 267 33-307 10-284 (477)
11 3s79_A Cytochrome P450 19A1; o 100.0 5.8E-34 2E-38 265.2 17.2 260 32-307 43-310 (503)
12 3nxu_A Cytochrome P450 3A4; al 100.0 1.7E-34 5.9E-39 267.5 12.5 261 35-307 15-287 (485)
13 3k9v_A 1,25-dihydroxyvitamin D 100.0 2.8E-33 9.5E-38 259.0 18.9 261 31-307 21-298 (482)
14 3gw9_A Sterol 14alpha-demethyl 100.0 1.3E-33 4.3E-38 259.1 13.7 264 33-307 2-268 (450)
15 3ld6_A Lanosterol 14-alpha dem 100.0 2.2E-32 7.7E-37 252.0 11.8 256 34-307 11-267 (461)
16 2ij2_A Cytochrome P450 BM3; mo 100.0 5E-31 1.7E-35 243.7 18.3 260 35-307 4-268 (470)
17 3i3k_A Lanosterol 14-alpha dem 100.0 3E-31 1E-35 244.4 11.6 258 31-307 8-267 (461)
18 3n9y_A Cholesterol SIDE-chain 100.0 4E-30 1.4E-34 238.3 18.5 263 32-307 7-290 (487)
19 2ve3_A Putative cytochrome P45 100.0 3E-30 1E-34 236.8 16.8 250 31-307 9-258 (444)
20 2cib_A Cytochrome P450 51; hem 100.0 9.3E-30 3.2E-34 234.2 16.9 255 34-307 4-260 (455)
21 3dbg_A Putative cytochrome P45 100.0 6.7E-30 2.3E-34 235.9 10.0 253 34-307 23-278 (467)
22 2cd8_A Cytochrome P450 monooxy 100.0 7.6E-29 2.6E-33 227.0 16.6 240 31-307 23-267 (436)
23 3v8d_A Cholesterol 7-alpha-mon 99.9 2.1E-28 7.3E-33 227.1 7.3 256 30-307 9-272 (491)
24 3mdm_A Cholesterol 24-hydroxyl 99.9 3E-26 1E-30 210.6 20.9 243 52-307 9-258 (456)
25 1jfb_A Nitric-oxide reductase 99.9 5.4E-26 1.8E-30 206.0 20.4 235 35-307 2-244 (404)
26 1cpt_A Cytochrome P450-TERP; o 99.9 2.4E-26 8.4E-31 209.9 16.5 250 31-307 3-271 (428)
27 1ued_A P450 OXYC, P450 monooxy 99.9 1.8E-25 6.3E-30 202.7 19.2 231 32-307 8-249 (406)
28 2zbx_A Cytochrome P450-SU1; be 99.9 3E-24 1E-28 195.1 22.1 235 34-307 5-248 (412)
29 2zwu_A Camphor 5-monooxygenase 99.9 2.7E-24 9.2E-29 195.6 18.3 236 29-307 6-253 (415)
30 1n97_A CYP175A1; electron tran 99.9 1E-25 3.4E-30 203.3 6.7 223 37-307 2-225 (389)
31 3dax_A Cytochrome P450 7A1; ch 99.9 1.8E-25 6.3E-30 207.1 8.3 255 31-307 10-272 (491)
32 3aba_A Cytochrome P450; oxidor 99.9 4.9E-23 1.7E-27 186.6 21.6 219 51-307 17-241 (403)
33 3awm_A Fatty acid alpha-hydrox 99.9 3E-23 1E-27 188.6 20.3 239 36-307 4-245 (415)
34 1izo_A P450bsbeta, cytochrome 99.9 4E-23 1.4E-27 187.9 20.6 237 41-307 7-246 (417)
35 3b6h_A Prostacyclin synthase; 99.9 2.6E-24 8.8E-29 199.9 12.6 257 30-307 14-277 (498)
36 3ivy_A Cytochrome P450 CYP125; 99.9 1.6E-23 5.5E-28 191.5 17.7 239 34-307 18-272 (433)
37 2jjn_A Cytochrome P450 113A1; 99.9 2.3E-23 7.9E-28 189.2 17.7 237 23-307 8-245 (411)
38 3oo3_A OXY protein; cytochrome 99.9 5.7E-23 1.9E-27 184.9 19.8 216 52-307 11-230 (384)
39 3abb_A CYP105D6, cytochrome P4 99.9 2.3E-23 8E-28 189.0 16.6 219 50-307 21-247 (408)
40 3tkt_A Cytochrome P450; aromat 99.9 6.8E-23 2.3E-27 188.2 19.6 230 55-307 47-293 (450)
41 1s1f_A Putative cytochrome P45 99.9 1.9E-22 6.5E-27 182.9 20.6 232 32-307 6-245 (406)
42 1odo_A Putative cytochrome P45 99.9 6.2E-23 2.1E-27 186.1 17.3 224 50-307 12-246 (408)
43 3tyw_A Putative cytochrome P45 99.9 2.5E-22 8.5E-27 182.7 21.2 219 51-307 27-253 (417)
44 2wm5_A CYP124, putative cytoch 99.9 2.5E-22 8.4E-27 183.7 20.7 223 53-307 44-278 (435)
45 3ejb_B Biotin biosynthesis cyt 99.9 1.7E-22 5.8E-27 182.9 18.6 222 53-307 13-238 (404)
46 3a4g_A Vitamin D hydroxylase; 99.9 3.1E-22 1E-26 181.8 18.8 218 51-307 18-240 (411)
47 4fb2_A P450CIN; heme, monooxyg 99.9 2.2E-22 7.6E-27 181.9 17.6 217 51-307 17-236 (398)
48 2y5n_A MYCG, P-450-like protei 99.9 4.4E-22 1.5E-26 181.1 19.5 219 51-307 35-258 (417)
49 2z36_A MOXA, cytochrome P450 t 99.9 2.8E-22 9.4E-27 182.2 17.0 230 36-307 9-249 (413)
50 3b98_A Prostaglandin I2 syntha 99.9 6.9E-24 2.3E-28 195.8 5.9 248 30-307 14-268 (475)
51 1z8o_A 6-deoxyerythronolide B 99.9 5.3E-22 1.8E-26 179.8 17.4 220 51-307 12-245 (404)
52 1q5d_A P450 epoxidase; cytochr 99.9 6.5E-22 2.2E-26 180.1 16.6 224 52-307 25-258 (419)
53 2xkr_A CYP142, putative cytoch 99.9 1.8E-21 6.1E-26 176.0 19.3 217 52-307 17-234 (398)
54 1gwi_A CYP154C1, cytochrome P4 99.9 9.7E-22 3.3E-26 178.5 17.2 219 51-307 15-246 (411)
55 2uuq_A CYP130, cytochrome P450 99.9 2.3E-21 8E-26 176.1 19.5 219 53-307 25-254 (414)
56 2z3t_A Cytochrome P450; monoxy 99.9 2.2E-21 7.7E-26 176.8 18.6 223 53-307 20-258 (425)
57 3r9b_A Cytochrome P450 164A2; 99.9 7.3E-22 2.5E-26 179.6 14.3 225 52-307 28-260 (418)
58 3lxh_A Cytochrome P450; heme, 99.9 1.7E-21 5.7E-26 177.4 16.5 221 53-307 38-260 (421)
59 3oft_A Cytochrome P450, CYP101 99.9 7.1E-21 2.4E-25 171.8 16.4 215 52-307 23-238 (396)
60 3mgx_A Putative P450 monooxyge 99.9 1.6E-20 5.6E-25 170.5 18.4 216 53-307 37-258 (415)
61 2xbk_A PIMD protein; epoxidati 99.9 3.3E-20 1.1E-24 167.9 20.0 211 52-307 25-245 (404)
62 3dsk_A Cytochrome P450 74A, ch 99.9 3.2E-21 1.1E-25 178.9 12.8 162 31-196 25-206 (495)
63 3nc3_A Cytochrome P450 CYPX; c 99.9 3.6E-21 1.2E-25 176.2 13.0 219 54-307 54-273 (441)
64 1lfk_A OXYB, P450 monooxygenas 99.8 1.3E-20 4.5E-25 170.2 15.7 209 60-307 20-240 (398)
65 3buj_A CALO2; heme, iron, meta 99.8 6.8E-21 2.3E-25 172.1 12.4 218 53-307 13-237 (397)
66 2dkk_A Cytochrome P450; CYP158 99.8 2.6E-20 9E-25 169.0 15.5 215 52-307 26-248 (411)
67 1n40_A P450 MT2, cytochrome P4 99.8 7.5E-20 2.6E-24 165.2 11.4 215 52-307 15-237 (396)
68 3rwl_A Cytochrome P450 alkane 99.8 1.4E-18 4.8E-23 158.4 19.3 222 53-307 38-269 (426)
69 2wiy_A XPLA-heme, cytochrome P 99.8 1.8E-18 6.2E-23 156.0 17.4 217 54-307 21-237 (394)
70 3b4x_A 367AA long hypothetical 99.8 6.8E-19 2.3E-23 157.3 14.2 203 55-307 1-214 (367)
71 3dan_A Cytochrome P450 74A2; A 99.8 4.9E-19 1.7E-23 163.1 13.6 161 32-195 7-187 (473)
72 3p3o_A Cytochrome P450; monoox 99.8 1E-19 3.5E-24 165.4 6.9 218 53-307 33-257 (416)
73 2rfb_A Cytochrome P450; heme, 99.8 5.4E-19 1.8E-23 156.6 10.9 190 64-307 2-192 (343)
74 1io7_A Cytochrome P450 CYP119; 99.8 8.9E-19 3E-23 156.6 12.1 203 55-307 1-213 (368)
75 4dnj_A Putative cytochrome P45 99.6 2.7E-15 9.2E-20 136.0 15.7 232 39-307 17-255 (412)
76 4dxy_A Cytochrome P450, CYP101 99.6 1.2E-13 4E-18 125.3 20.3 221 53-307 37-259 (417)
77 2yjn_B Erycii, DTDP-4-keto-6-d 98.0 2.1E-08 7.2E-13 89.4 -10.5 133 35-194 35-180 (381)
78 2diu_A KIAA0430 protein; struc 88.4 0.96 3.3E-05 31.1 5.2 60 44-104 13-76 (96)
79 2krb_A Eukaryotic translation 87.9 2 6.9E-05 28.0 6.7 59 44-102 5-75 (81)
80 3lqv_A PRE-mRNA branch site pr 86.7 3.2 0.00011 29.1 7.6 67 34-102 2-75 (115)
81 1s79_A Lupus LA protein; RRM, 80.7 4.6 0.00016 27.9 6.1 60 42-103 13-80 (103)
82 2nlw_A Eukaryotic translation 79.5 5.7 0.00019 27.4 6.3 62 41-102 16-89 (105)
83 1iqt_A AUF1, heterogeneous nuc 78.9 4.2 0.00015 25.7 5.2 58 44-103 3-69 (75)
84 2mss_A Protein (musashi1); RNA 78.9 4.5 0.00015 25.7 5.3 58 44-103 3-69 (75)
85 4fxv_A ELAV-like protein 1; RN 78.3 4 0.00014 27.9 5.1 59 43-103 22-90 (99)
86 2pe8_A Splicing factor 45; RRM 76.4 3.9 0.00013 28.5 4.6 68 36-103 4-85 (105)
87 2dnz_A Probable RNA-binding pr 75.7 11 0.00037 25.0 6.8 63 39-103 4-76 (95)
88 1whx_A Hypothetical protein ri 72.3 16 0.00055 25.3 7.2 59 43-103 13-75 (111)
89 2a3j_A U1 small nuclear ribonu 72.2 8.1 0.00028 27.9 5.6 62 42-103 31-101 (127)
90 1nu4_A U1A RNA binding domain; 71.7 5 0.00017 27.0 4.2 61 42-102 10-79 (97)
91 3s8s_A Histone-lysine N-methyl 71.0 6.7 0.00023 27.4 4.8 60 41-102 7-76 (110)
92 3ns6_A Eukaryotic translation 70.9 9.4 0.00032 25.9 5.5 60 42-101 8-81 (100)
93 2la6_A RNA-binding protein FUS 70.5 18 0.00061 24.2 6.9 60 42-103 15-92 (99)
94 3bs9_A Nucleolysin TIA-1 isofo 69.3 9.1 0.00031 24.9 5.0 59 42-102 8-76 (87)
95 3mdf_A Peptidyl-prolyl CIS-tra 68.4 18 0.0006 23.3 6.4 62 39-102 6-77 (85)
96 2div_A TRNA selenocysteine ass 68.2 18 0.00063 24.1 6.6 65 37-103 6-81 (99)
97 1x5p_A Negative elongation fac 68.1 14 0.00048 24.7 5.9 59 41-103 16-78 (97)
98 1whw_A Hypothetical protein ri 67.9 20 0.00069 23.9 6.8 61 41-103 9-79 (99)
99 2jvr_A Nucleolar protein 3; RN 67.8 12 0.0004 26.3 5.6 60 42-103 30-96 (111)
100 1p27_B RNA-binding protein 8A; 67.3 19 0.00063 24.5 6.5 59 43-103 26-94 (106)
101 2cph_A RNA binding motif prote 66.9 27 0.00091 23.6 8.2 60 42-103 17-88 (107)
102 1oo0_B CG8781-PA, drosophila Y 66.7 18 0.00062 24.7 6.4 59 43-103 29-97 (110)
103 1x5u_A Splicing factor 3B subu 66.6 27 0.00091 23.6 8.4 60 42-103 17-86 (105)
104 3ex7_B RNA-binding protein 8A; 66.5 23 0.00078 24.9 7.1 59 43-103 25-93 (126)
105 2dgs_A DAZ-associated protein 66.3 23 0.00079 23.6 6.8 61 41-103 11-80 (99)
106 2dnp_A RNA-binding protein 14; 66.0 25 0.00085 23.0 6.8 63 39-103 8-72 (90)
107 3s6e_A RNA-binding protein 39; 66.0 8.8 0.0003 27.1 4.5 68 36-103 3-84 (114)
108 2kvi_A Nuclear polyadenylated 65.9 19 0.00065 24.0 6.2 60 42-103 12-74 (96)
109 2kxn_B Transformer-2 protein h 65.7 34 0.0012 24.4 8.6 64 38-103 44-117 (129)
110 2bz2_A Negative elongation fac 65.5 12 0.00041 26.6 5.3 58 42-103 41-102 (121)
111 4a8x_A RNA-binding protein wit 65.5 16 0.00056 23.6 5.8 59 43-103 7-76 (88)
112 4f25_A Polyadenylate-binding p 65.2 13 0.00043 26.0 5.3 59 43-103 8-74 (115)
113 2cqc_A Arginine/serine-rich sp 65.1 17 0.0006 23.9 5.9 64 37-102 12-85 (95)
114 2dgx_A KIAA0430 protein; RRM d 64.9 7.9 0.00027 26.0 4.0 62 42-103 11-81 (96)
115 3beg_B Splicing factor, argini 64.8 21 0.00072 24.8 6.5 60 42-103 18-80 (115)
116 2wbr_A GW182, gawky, LD47780P; 64.7 18 0.00063 24.3 5.6 59 41-102 8-71 (89)
117 3ue2_A Poly(U)-binding-splicin 64.6 10 0.00036 26.9 4.8 65 39-103 19-100 (118)
118 2do4_A Squamous cell carcinoma 64.6 22 0.00077 23.7 6.5 61 41-103 18-87 (100)
119 3ucg_A Polyadenylate-binding p 64.4 10 0.00036 24.7 4.6 58 44-103 10-76 (89)
120 2kn4_A Immunoglobulin G-bindin 64.2 23 0.0008 26.0 7.0 60 42-103 72-141 (158)
121 3md1_A Nuclear and cytoplasmic 64.2 15 0.0005 23.6 5.2 58 44-103 5-72 (83)
122 3s7r_A Heterogeneous nuclear r 64.2 9.4 0.00032 24.9 4.3 62 39-102 10-80 (87)
123 2d9o_A DNAJ (HSP40) homolog, s 64.0 21 0.00071 24.5 6.1 47 56-103 31-81 (100)
124 2dgv_A HnRNP M, heterogeneous 63.3 25 0.00086 23.0 6.4 60 42-103 10-77 (92)
125 1rk8_A CG8781-PA, CG8781-PA pr 62.5 13 0.00045 27.9 5.3 59 43-103 75-143 (165)
126 2cq3_A RNA-binding protein 9; 62.2 20 0.00069 24.2 5.9 62 40-103 15-84 (103)
127 2hvz_A Splicing factor, argini 62.0 18 0.00063 24.3 5.6 58 44-103 4-66 (101)
128 2e5h_A Zinc finger CCHC-type a 60.9 21 0.00072 23.5 5.7 51 41-93 17-76 (94)
129 2rs2_A Musashi-1, RNA-binding 60.9 20 0.00069 24.7 5.7 60 41-102 26-94 (109)
130 2d9p_A Polyadenylate-binding p 60.7 27 0.00093 23.4 6.3 66 36-103 11-84 (103)
131 1why_A Hypothetical protein ri 60.7 33 0.0011 22.7 7.9 60 39-100 16-79 (97)
132 2dgu_A Heterogeneous nuclear r 60.7 24 0.00082 23.8 6.0 60 42-103 13-74 (103)
133 2dh8_A DAZ-associated protein 60.6 16 0.00054 24.8 5.1 63 39-103 15-86 (105)
134 1wg5_A Heterogeneous nuclear r 59.3 20 0.00069 24.3 5.4 60 42-103 17-85 (104)
135 3d2w_A TAR DNA-binding protein 59.1 20 0.00068 23.6 5.2 53 37-91 8-64 (89)
136 2fy1_A RNA-binding motif prote 59.1 33 0.0011 23.9 6.7 61 41-103 8-77 (116)
137 2dgo_A Cytotoxic granule-assoc 58.5 22 0.00074 24.6 5.6 61 41-103 16-86 (115)
138 1uaw_A Mouse-musashi-1; RNP-ty 58.4 13 0.00046 23.3 4.1 57 44-102 4-69 (77)
139 2cpf_A RNA binding motif prote 58.2 25 0.00086 23.3 5.7 60 42-103 7-79 (98)
140 2i2y_A Fusion protein consists 58.0 37 0.0013 24.7 7.1 60 42-103 75-139 (150)
141 2cqd_A RNA-binding region cont 57.9 25 0.00086 24.3 5.9 61 41-103 18-87 (116)
142 1x5s_A Cold-inducible RNA-bind 57.4 40 0.0014 22.5 7.0 62 40-103 12-83 (102)
143 1wi8_A EIF-4B, eukaryotic tran 57.3 25 0.00086 23.7 5.7 67 34-103 9-85 (104)
144 2xnq_A Nuclear polyadenylated 57.2 33 0.0011 22.9 6.2 58 43-102 25-85 (97)
145 2cqi_A Nucleolysin TIAR; RNA r 57.2 25 0.00085 23.7 5.6 61 41-103 16-84 (103)
146 1x4b_A Heterogeneous nuclear r 57.1 10 0.00036 26.4 3.7 59 43-103 30-97 (116)
147 2cpz_A CUG triplet repeat RNA- 57.1 33 0.0011 23.6 6.4 60 42-103 27-96 (115)
148 2dhg_A TRNA selenocysteine ass 56.7 41 0.0014 22.5 7.4 65 37-103 6-81 (104)
149 3ulh_A THO complex subunit 4; 56.7 21 0.00071 24.2 5.2 59 42-102 31-98 (107)
150 3p5t_L Cleavage and polyadenyl 56.4 21 0.0007 23.5 4.9 58 44-103 5-74 (90)
151 1x4c_A Splicing factor, argini 55.9 32 0.0011 23.4 6.1 57 43-101 18-77 (108)
152 1x4e_A RNA binding motif, sing 55.6 19 0.00066 23.1 4.6 64 37-102 2-75 (85)
153 1p1t_A Cleavage stimulation fa 55.3 28 0.00096 23.4 5.6 59 42-102 10-78 (104)
154 2dgt_A RNA-binding protein 30; 55.2 30 0.001 22.6 5.7 61 41-103 11-73 (92)
155 3n9u_C Cleavage and polyadenyl 54.4 27 0.00092 26.0 5.8 57 44-102 59-127 (156)
156 2x1f_A MRNA 3'-END-processing 54.2 35 0.0012 22.5 5.9 58 43-102 5-72 (96)
157 2jrs_A RNA-binding protein 39; 53.3 36 0.0012 23.3 6.0 60 42-103 28-97 (108)
158 2ytc_A PRE-mRNA-splicing facto 53.2 41 0.0014 21.4 6.7 59 42-102 14-77 (85)
159 2dnq_A RNA-binding protein 4B; 52.2 45 0.0016 21.6 6.9 63 39-103 7-71 (90)
160 2jwn_A Embryonic polyadenylate 52.2 21 0.00073 25.0 4.7 58 44-103 40-106 (124)
161 2ywk_A Putative RNA-binding pr 52.1 25 0.00086 23.1 4.9 60 42-103 18-86 (95)
162 2cqb_A Peptidyl-prolyl CIS-tra 51.0 25 0.00086 23.6 4.8 63 39-103 11-83 (102)
163 2dnm_A SRP46 splicing factor; 50.8 45 0.0016 22.3 6.1 60 42-103 15-84 (103)
164 2cq4_A RNA binding motif prote 50.4 22 0.00075 24.5 4.4 56 44-101 29-93 (114)
165 2la4_A Nuclear and cytoplasmic 50.1 39 0.0013 22.5 5.6 58 43-102 30-91 (101)
166 2lea_A Serine/arginine-rich sp 49.9 55 0.0019 23.4 6.7 59 43-103 50-118 (135)
167 2jvo_A Nucleolar protein 3; nu 49.8 36 0.0012 23.3 5.5 59 43-103 34-94 (108)
168 1sjq_A Polypyrimidine tract-bi 49.7 49 0.0017 22.8 6.1 63 39-103 15-83 (105)
169 1x4g_A Nucleolysin TIAR; struc 49.4 53 0.0018 22.3 6.4 60 42-103 27-90 (109)
170 2adc_A Polypyrimidine tract-bi 49.2 56 0.0019 25.7 7.3 59 43-103 37-101 (229)
171 2cpe_A RNA-binding protein EWS 49.1 28 0.00097 23.8 4.9 60 42-103 17-94 (113)
172 2j76_E EIF-4B, EIF4B, eukaryot 49.0 38 0.0013 22.6 5.4 57 44-103 23-89 (100)
173 1h2v_Z 20 kDa nuclear CAP bind 48.9 39 0.0013 24.8 5.9 61 41-103 40-110 (156)
174 2err_A Ataxin-2-binding protei 48.7 19 0.00065 24.8 3.8 60 42-103 31-98 (109)
175 1x4a_A Splicing factor, argini 48.6 60 0.002 21.9 7.0 60 42-103 24-90 (109)
176 1x4d_A Matrin 3; structural ge 48.0 49 0.0017 22.6 5.8 65 37-103 12-83 (102)
177 2cpi_A CCR4-NOT transcription 48.0 12 0.0004 26.0 2.6 61 41-103 16-92 (111)
178 1l3k_A Heterogeneous nuclear r 47.7 25 0.00086 26.7 4.8 61 41-103 14-83 (196)
179 2dnh_A Bruno-like 5, RNA bindi 47.7 54 0.0019 21.9 6.1 59 41-101 16-83 (105)
180 4f02_A Polyadenylate-binding p 46.1 36 0.0012 26.5 5.6 64 37-102 12-85 (213)
181 2voo_A Lupus LA protein; RNA-b 45.9 25 0.00085 27.3 4.5 58 44-103 113-178 (193)
182 2dng_A Eukaryotic translation 45.5 33 0.0011 23.0 4.7 66 35-103 10-84 (103)
183 2cqg_A TDP-43, TAR DNA-binding 45.5 51 0.0017 22.0 5.7 59 41-102 16-83 (103)
184 2cq0_A Eukaryotic translation 45.2 20 0.00068 24.2 3.4 60 41-102 16-85 (103)
185 1fxl_A Paraneoplastic encephal 45.1 41 0.0014 24.5 5.6 58 44-103 6-73 (167)
186 1l3k_A Heterogeneous nuclear r 45.0 30 0.001 26.2 4.9 59 43-103 107-174 (196)
187 1wf1_A RNA-binding protein RAL 44.8 37 0.0013 23.2 4.9 61 42-103 29-91 (110)
188 2khc_A Testis-specific RNP-typ 44.7 27 0.00091 24.2 4.2 56 44-101 44-109 (118)
189 1x5t_A Splicing factor 3B subu 44.6 42 0.0014 22.0 5.0 60 42-103 7-77 (96)
190 2dis_A Unnamed protein product 44.5 69 0.0024 21.5 6.4 60 42-103 10-83 (109)
191 2cpj_A Non-POU domain-containi 44.3 42 0.0014 22.3 5.0 60 42-103 17-80 (99)
192 1u6f_A Tcubp1, RNA-binding pro 44.3 57 0.0019 23.2 6.1 59 43-103 45-113 (139)
193 3zzy_A Polypyrimidine tract-bi 44.2 39 0.0013 24.4 5.0 64 36-101 22-93 (130)
194 3v4m_A Splicing factor U2AF 65 43.6 55 0.0019 22.4 5.6 47 57-103 30-88 (105)
195 2e5g_A U6 snRNA-specific termi 43.1 34 0.0012 22.5 4.3 59 43-103 11-73 (94)
196 2qfj_A FBP-interacting repress 42.9 73 0.0025 24.4 7.0 59 43-103 31-99 (216)
197 2cpy_A RNA-binding protein 12; 42.8 22 0.00074 24.7 3.4 64 37-102 12-84 (114)
198 1sjr_A Polypyrimidine tract-bi 42.7 48 0.0017 25.0 5.5 54 44-99 50-109 (164)
199 3pgw_S U1-70K; protein-RNA com 42.5 44 0.0015 29.7 6.1 61 41-103 103-173 (437)
200 2kt5_A RNA and export factor-b 42.3 73 0.0025 22.1 6.3 59 43-103 38-105 (124)
201 2f3j_A RNA and export factor b 41.6 82 0.0028 23.8 6.8 48 56-103 102-158 (177)
202 2dnr_A Synaptojanin-1; RRM dom 41.4 39 0.0013 22.8 4.2 48 55-102 28-76 (91)
203 2cpd_A Apobec-1 stimulating pr 41.3 72 0.0025 21.0 5.9 60 42-103 17-80 (99)
204 2hzc_A Splicing factor U2AF 65 40.6 63 0.0022 20.5 5.4 59 42-102 8-80 (87)
205 2cpx_A Hypothetical protein FL 40.3 60 0.0021 22.1 5.5 63 39-103 24-96 (115)
206 2dha_A FLJ20171 protein; RRM d 39.7 19 0.00065 25.7 2.7 60 41-102 24-95 (123)
207 2cq1_A PTB-like protein L; RRM 39.7 61 0.0021 21.9 5.3 61 41-103 16-82 (101)
208 3md3_A Nuclear and cytoplasmic 39.4 40 0.0014 24.5 4.7 58 44-103 4-70 (166)
209 2dit_A HIV TAT specific factor 39.3 36 0.0012 23.4 4.1 68 36-103 11-93 (112)
210 1jmt_A Splicing factor U2AF 35 39.3 64 0.0022 21.9 5.3 44 60-103 44-97 (104)
211 2e5j_A Methenyltetrahydrofolat 38.9 81 0.0028 20.7 7.2 59 43-103 22-85 (97)
212 2cjk_A Nuclear polyadenylated 38.8 56 0.0019 23.8 5.5 59 43-103 90-157 (167)
213 2ad9_A Polypyrimidine tract-bi 38.4 83 0.0028 22.2 5.9 61 41-103 32-98 (119)
214 2ku7_A MLL1 PHD3-CYP33 RRM chi 38.4 95 0.0032 21.9 6.5 49 44-94 67-124 (140)
215 1whv_A Poly(A)-specific ribonu 38.1 37 0.0013 23.3 3.7 38 56-93 29-67 (100)
216 2e44_A Insulin-like growth fac 37.8 83 0.0028 20.5 7.7 60 42-103 17-83 (96)
217 2dgp_A Bruno-like 4, RNA bindi 37.3 90 0.0031 20.8 6.8 50 42-93 15-73 (106)
218 2g4b_A Splicing factor U2AF 65 36.9 49 0.0017 24.3 4.8 60 41-102 95-164 (172)
219 2jwa_A Receptor tyrosine-prote 36.8 45 0.0015 19.1 3.3 7 21-27 32-38 (44)
220 1x4h_A RNA-binding protein 28; 36.3 96 0.0033 20.8 7.5 53 40-94 15-76 (111)
221 1wex_A Hypothetical protein (r 36.3 99 0.0034 20.9 6.6 61 41-103 16-82 (104)
222 2hgn_A Heterogeneous nuclear r 36.2 52 0.0018 23.9 4.7 59 42-103 48-114 (139)
223 2cq2_A Hypothetical protein LO 36.1 1.1E+02 0.0037 21.4 7.2 59 38-98 23-87 (114)
224 1wez_A HnRNP H', FTP-3, hetero 36.1 28 0.00095 23.6 3.0 59 42-103 17-83 (102)
225 2do0_A HnRNP M, heterogeneous 35.7 82 0.0028 21.3 5.6 60 42-103 17-85 (114)
226 2lxi_A RNA-binding protein 10; 35.3 41 0.0014 22.1 3.7 49 44-94 5-63 (91)
227 1x4f_A Matrin 3; structural ge 35.2 50 0.0017 23.1 4.2 63 40-103 25-93 (112)
228 2lmi_A GRSF-1, G-rich sequence 34.8 49 0.0017 22.4 4.2 61 41-103 12-83 (107)
229 2ghp_A U4/U6 snRNA-associated 34.0 48 0.0017 27.1 4.7 62 40-103 41-109 (292)
230 3q2s_C Cleavage and polyadenyl 33.8 55 0.0019 26.0 4.9 58 43-102 71-140 (229)
231 2hgm_A HNRPF protein, heteroge 33.1 63 0.0022 23.0 4.6 60 41-103 43-112 (126)
232 4f02_A Polyadenylate-binding p 32.9 74 0.0025 24.6 5.5 59 43-103 106-172 (213)
233 2e5i_A Heterogeneous nuclear r 32.6 77 0.0026 22.5 5.0 55 45-101 30-89 (124)
234 3pgw_A U1-A; protein-RNA compl 32.5 52 0.0018 26.8 4.7 63 41-103 10-81 (282)
235 2xs2_A Deleted in azoospermia- 32.5 22 0.00074 23.9 1.9 58 43-103 12-77 (102)
236 2yh0_A Splicing factor U2AF 65 32.0 49 0.0017 25.0 4.2 58 44-103 118-185 (198)
237 3tht_A Alkylated DNA repair pr 31.2 1.2E+02 0.0041 25.9 6.8 60 35-94 13-75 (345)
238 3j1r_A Archaeal adhesion filam 30.4 55 0.0019 16.1 2.9 16 10-25 9-24 (26)
239 1wf0_A TDP-43, TAR DNA-binding 29.8 69 0.0024 20.5 4.1 48 43-92 8-59 (88)
240 2hgl_A HNRPF protein, heteroge 29.6 35 0.0012 24.8 2.7 58 43-102 47-115 (136)
241 3r27_A HnRNP L, heterogeneous 29.3 1.3E+02 0.0046 20.3 6.2 52 41-94 22-76 (100)
242 3tyt_A Heterogeneous nuclear r 29.1 1.1E+02 0.0037 23.7 5.8 60 42-103 6-71 (205)
243 1ufw_A Synaptojanin 2; RNP dom 28.4 65 0.0022 21.9 3.6 48 55-102 37-85 (95)
244 2ki2_A SS-DNA binding protein 27.1 78 0.0027 20.3 4.0 57 44-103 5-71 (90)
245 2db1_A Heterogeneous nuclear r 26.8 35 0.0012 23.8 2.3 58 43-102 20-88 (118)
246 2dnn_A RNA-binding protein 12; 26.6 83 0.0028 21.6 4.2 57 43-102 19-83 (109)
247 3ctr_A Poly(A)-specific ribonu 26.5 26 0.00089 24.1 1.4 38 56-93 19-57 (101)
248 3pgw_A U1-A; protein-RNA compl 25.8 1.6E+02 0.0054 23.7 6.5 38 56-93 221-262 (282)
249 1fxl_A Paraneoplastic encephal 25.7 1.5E+02 0.0052 21.2 5.9 58 43-102 91-158 (167)
250 1b35_D CRPV, protein (cricket 25.0 31 0.001 20.1 1.3 11 41-51 30-40 (57)
251 2qfj_A FBP-interacting repress 24.7 1.2E+02 0.0042 23.0 5.4 59 43-103 128-196 (216)
252 1wel_A RNA-binding protein 12; 24.7 44 0.0015 23.4 2.5 61 41-103 26-95 (124)
253 2ek1_A RNA-binding protein 12; 24.6 39 0.0013 22.1 2.1 60 42-103 17-86 (95)
254 1qm9_A Polypyrimidine tract-bi 24.0 1.4E+02 0.0049 22.4 5.6 58 44-103 7-70 (198)
255 2kvc_A Putative uncharacterize 23.9 1.7E+02 0.0058 20.1 5.1 50 247-304 6-55 (103)
256 1b7f_A Protein (SXL-lethal pro 23.6 1.4E+02 0.0047 21.5 5.3 58 42-101 91-158 (168)
257 2g4b_A Splicing factor U2AF 65 22.9 1.6E+02 0.0053 21.4 5.5 59 43-103 7-79 (172)
258 3egn_A RNA-binding protein 40; 22.7 2.1E+02 0.0071 20.2 6.1 63 39-103 44-121 (143)
259 3sde_A Paraspeckle component 1 22.2 1.2E+02 0.0041 24.3 5.0 59 43-103 25-87 (261)
260 1x5o_A RNA binding motif, sing 21.5 1.6E+02 0.0056 19.7 5.0 59 42-102 27-94 (114)
261 2lkz_A RNA-binding protein 5; 21.5 1E+02 0.0035 20.5 3.7 50 43-94 12-72 (95)
262 2dgw_A Probable RNA-binding pr 20.3 1.3E+02 0.0044 19.3 4.1 60 41-103 11-78 (91)
No 1
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=100.00 E-value=1.3e-38 Score=296.17 Aligned_cols=272 Identities=18% Similarity=0.273 Sum_probs=206.7
Q ss_pred CCCCCCCCCCCCCcccccccCC--CCchHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCcCcc
Q 043529 31 RELNLPPGPKPWPIIGNLNLIG--PLPYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKLAAG 108 (307)
Q Consensus 31 ~~~~lpPgP~~lPilGn~~~l~--~~~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~~~ 108 (307)
++.++||||+++|++||++++. ..+|..+.+|+++|||||++++|+.++|||+||++++++|.+++..|++||.....
T Consensus 5 ~~~~~PPgP~~lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~~k~il~~~~~~f~~rp~~~~~ 84 (494)
T 3swz_A 5 TGAKYPKSLLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMATL 84 (494)
T ss_dssp -------CCBCCCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTBBCCCCHHH
T ss_pred CCCCCCCCCCCCCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCCCCEEEECCHHHHHHHHHhCcHhhCCCCCcHHH
Confidence 4557899999999999999874 35789999999999999999999999999999999999999999999999975444
Q ss_pred ceeecCCcceEeccCChhHHHHHHHHHHhhcCH--HHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHHHHHHHHHHHH
Q 043529 109 KYTTFNYSNITWSQYGPYWRQLRKICLMELFTA--KRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNLLDLNLEVMSR 186 (307)
Q Consensus 109 ~~~~~~~~~~~~~~~G~~wk~~Rr~~~~~~~~~--~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~t~~ii~~ 186 (307)
+.+..+..+++++.+|++||.+||+++ +.|+. ..+..+.+.+.+++..+++.+.+..++++|+.+.+.++++++|+.
T Consensus 85 ~~~~~~~~gl~~~~~g~~wr~~Rr~~~-~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~vd~~~~~~~~t~dvi~~ 163 (494)
T 3swz_A 85 DIASNNRKGIAFADSGAHWQLHRRLAM-ATFALFKDGDQKLEKIICQEISTLCDMLATHNGQSIDISFPVFVAVTNVISL 163 (494)
T ss_dssp HHHTTTTCSSSSSCSSHHHHHHHHHHH-HHTTTTSSSTTCHHHHHHHHHHHHHHHHHHTTTEEECCHHHHHHHHHHHHHH
T ss_pred HHhccCCCCeEeCCCCHHHHHHHHHHH-HHHHHhcchHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHH
Confidence 433333345667778999999999996 66652 335678899999999999999765567899999999999999999
Q ss_pred HHhcCccccchhhHHHHHHHHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 043529 187 MVLGKKYTNEIVARHEFKEMADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNY 266 (307)
Q Consensus 187 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 266 (307)
++||.+++..+.....+.+..+.+........+.+++|+++++|.. ..++++...+.++.++..+++++++... ..
T Consensus 164 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~p~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~ 239 (494)
T 3swz_A 164 ICFNTSYKNGDPELNVIQNYNEGIIDNLSKDSLVDLVPWLKIFPNK-TLEKLKSHVKIRNDLLNKILENYKEKFR---SD 239 (494)
T ss_dssp HHHSCCCCTTCTHHHHHHHHHHHHHHHHCSSSSCCSSCGGGTSCCS-HHHHHHHHHHHHHHHHHHHHHHHTTTCC---TT
T ss_pred HHcCCcCCCCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHhhc---cc
Confidence 9999988654433334444444444444445567889999887632 3345566677788888899988876542 22
Q ss_pred CCCCHHHHHhhhcCC-C-------CccccCchHHHHHHHHHHhhccCCC
Q 043529 267 EAKDMMDVLLQLADD-P-------TLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 267 ~~~d~ld~ll~~~~~-~-------~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
...|+++.|++...+ + ..+..+++++|.+++.++++|||||
T Consensus 240 ~~~d~l~~ll~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dT 288 (494)
T 3swz_A 240 SITNMLDTLMQAKMNSDNGNAGPDQDSELLSDNHILTTIGDIFGAGVET 288 (494)
T ss_dssp CCCSHHHHHHHHHHTSCCC----CCSSGGGCHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhhcccccccccccccCHHHHHHHHHHHhhcchhH
Confidence 367999999974311 1 0123599999999999999999985
No 2
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=283.43 Aligned_cols=273 Identities=20% Similarity=0.341 Sum_probs=190.8
Q ss_pred CCCCCCCCCCCCCcccccccCCCCchHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCcCccce
Q 043529 31 RELNLPPGPKPWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKLAAGKY 110 (307)
Q Consensus 31 ~~~~lpPgP~~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~~~~~ 110 (307)
++.++||||+++|++||++++..+++..+.+|+++||+||++++|+.++|+|+||++++++|.+++..|++||.......
T Consensus 6 ~~~~~pPgP~~~P~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~~~~~ 85 (507)
T 3pm0_A 6 SSKGKPPGPFAWPLIGNAAAVGQAAHLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQQGSAFADRPSFASFRV 85 (507)
T ss_dssp ----------------------CCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTSCBCCCCHHHHH
T ss_pred CCCCCCcCCCCCCeeCchhhcCccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCcchHHHh
Confidence 34467999999999999988877889999999999999999999999999999999999999988899999987544333
Q ss_pred eecCCcceEeccCChhHHHHHHHHHHhhcCHH------HHHhhHHHHHHHHHHHHHHHHhhc--CCceechHHHHHHHHH
Q 043529 111 TTFNYSNITWSQYGPYWRQLRKICLMELFTAK------RLNSYEYIRVEETMLFLRNLYESS--GKPIILKDNLLDLNLE 182 (307)
Q Consensus 111 ~~~~~~~~~~~~~G~~wk~~Rr~~~~~~~~~~------~l~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~t~~ 182 (307)
.. ++.+++++.+|+.|+++||+++ +.|+.. .++.+.+.+.++++.+++.+.+.. ++++|+.+.+.+++++
T Consensus 86 ~~-~g~~l~~~~~g~~w~~~R~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~d 163 (507)
T 3pm0_A 86 VS-GGRSMAFGHYSEHWKVQRRAAH-SMMRNFFTRQPRSRQVLEGHVLSEARELVALLVRGSADGAFLDPRPLTVVAVAN 163 (507)
T ss_dssp GG-GGTCSSSSCSSHHHHHHHHHHH-HHHHHSTTSSTTHHHHHHHHHHHHHHHHHHHHHHTTGGGCCBCCHHHHHHHHHH
T ss_pred hc-CCCceEECCCChHHHHHHHHHH-HHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhhcccCCCcChHHHHHHHHHH
Confidence 32 2245557778999999999996 443221 234588999999999999998754 5789999999999999
Q ss_pred HHHHHHhcCccccchhhHHHHHHHHHHHHHhccCCccccccccccccccc--cHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043529 183 VMSRMVLGKKYTNEIVARHEFKEMADELFILGGVLDIGDMIPWLGFLDLQ--GYIKRMKVLAKKFDRLFEYELDEHNARR 260 (307)
Q Consensus 183 ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 260 (307)
+++.++||.++...+.....+.+.+..++.......+.+++|+++++|.. +..++..+..+.+.+++.+.|+++++..
T Consensus 164 vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 243 (507)
T 3pm0_A 164 VMSAVCFGCRYSHDDPEFRELLSHNEEFGRTVGAGSLVDVMPWLQYFPNPVRTVFREFEQLNRNFSNFILDKFLRHCESL 243 (507)
T ss_dssp HHHHHHTSCCCCTTCHHHHHHTSCHHHHHHHHSTTCCTTTCGGGGGSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHccccCCCCCHHHHHHHHHHHHHHHhcccchHHHHhHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999998754433334444444555544444556789998877532 1245566677788889999999988765
Q ss_pred cCCCCCCCCCHHHHHhhhcCCC-C-----ccccCchHHHHHHHHHHhhccCCC
Q 043529 261 KGVDNYEAKDMMDVLLQLADDP-T-----LEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 261 ~~~~~~~~~d~ld~ll~~~~~~-~-----~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
+ .+....|+++.|++..+.. . .+..+++++|.+++.++++|||||
T Consensus 244 ~--~~~~~~d~l~~ll~~~~~~~~~~~~~~~~~l~~~~i~~~~~~l~~AG~dT 294 (507)
T 3pm0_A 244 R--PGAAPRDMMDAFILSAEKKAAGDSHGGGARLDLENVPATITDIFGASQDT 294 (507)
T ss_dssp C--TTCCCCSHHHHHHHHHHHHHSCC----CCCCCGGGHHHHHHHHHHHHHHH
T ss_pred c--cccCCccHHHHHHHHhhhhccccccCCCCCCCHHHHHHHHHHHHhcccch
Confidence 3 2234689999999632211 0 122599999999999999999985
No 3
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=100.00 E-value=4.8e-35 Score=270.58 Aligned_cols=268 Identities=21% Similarity=0.259 Sum_probs=201.4
Q ss_pred CCCCCCCCCCCCCcccccccC-CCCchHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCcCccc
Q 043529 31 RELNLPPGPKPWPIIGNLNLI-GPLPYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKLAAGK 109 (307)
Q Consensus 31 ~~~~lpPgP~~lPilGn~~~l-~~~~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~~~~ 109 (307)
++.++||||+++|++||++++ ...++..+.+|+++||+||++++|+.++|+++||++++++|.+++..|++|+......
T Consensus 7 ~~~~lpPgP~~~PliG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~~~~v~~il~~~~~~f~~r~~~~~~~ 86 (476)
T 3e6i_A 7 SKGKLPPGPFPLPIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVGSQRMVVMHGYKAVKEALLDYKDEFSGRGDLPAFH 86 (476)
T ss_dssp ---CCCCCCCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTSTTTTCEECCCGGGG
T ss_pred CCCCCCcCCCCcccccChhhhccccHhHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcchHhhCCCCCCchhh
Confidence 445789999999999999988 5678999999999999999999999999999999999999999888999988654444
Q ss_pred eeecCCcceEeccCChhHHHHHHHHHHhhcCHHHH--HhhHHHHHHHHHHHHHHHHhhcCCceechHHHHHHHHHHHHHH
Q 043529 110 YTTFNYSNITWSQYGPYWRQLRKICLMELFTAKRL--NSYEYIRVEETMLFLRNLYESSGKPIILKDNLLDLNLEVMSRM 187 (307)
Q Consensus 110 ~~~~~~~~~~~~~~G~~wk~~Rr~~~~~~~~~~~l--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~t~~ii~~~ 187 (307)
.+.. + +++..+|+.|+++||++. +.+....+ ..+++.+.++++.+++.+.+..++++|+.+.+.++++++|+.+
T Consensus 87 ~~~~--~-~l~~~~g~~w~~~Rr~~~-~~l~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~d~~~~~~~~~~dvi~~~ 162 (476)
T 3e6i_A 87 AHRD--R-GIIFNNGPTWKDIRRFSL-TTLRNYGMGKQGNESRIQREAHFLLEALRKTQGQPFDPTFLIGCAPCNVIADI 162 (476)
T ss_dssp GGTT--S-SSTTCCSTTHHHHHHHHH-HHHHHTC-CCSHHHHHHHHHHHHHHHHHHTTTTSCBCTHHHHTHHHHHHHHHH
T ss_pred eecC--C-CEEecCCcHHHHHHHHHH-HHHHhcCCCchHHHHHHHHHHHHHHHHHHHhCCCCcChHHHHHHHHHHHHHHH
Confidence 3322 2 445567999999999875 44433222 2457888899999999997655678999999999999999999
Q ss_pred HhcCccccchhhHHHHHHHHHHHHHhccCC--ccccccc-cccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 043529 188 VLGKKYTNEIVARHEFKEMADELFILGGVL--DIGDMIP-WLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVD 264 (307)
Q Consensus 188 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~P-~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 264 (307)
+||.+++..+.....+.+.+...+...... .+.+.+| +++++| +..++..+..+.+.+++.+.|+++++..+
T Consensus 163 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~lp--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--- 237 (476)
T 3e6i_A 163 LFRKHFDYNDEKFLRLMYLFNENFHLLSTPWLQLYNNFPSFLHYLP--GSHRKVIKNVAEVKEYVSERVKEHHQSLD--- 237 (476)
T ss_dssp HHSCCCCTTCHHHHHHHHHHHHHHHHTTSHHHHHHHHSHHHHTTSC--SHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred HcCCCCCCCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHhhcCC---
Confidence 999998754433334444444444433221 1235567 566653 33445566778888999999999987653
Q ss_pred CCCCCCHHHHHhhhcCCC--CccccCchHHHHHHHHHHhhccCCC
Q 043529 265 NYEAKDMMDVLLQLADDP--TLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 265 ~~~~~d~ld~ll~~~~~~--~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
...+.|+++.|++...++ ..+..+|++++.+++.++++|||||
T Consensus 238 ~~~~~d~~~~ll~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dT 282 (476)
T 3e6i_A 238 PNCPRDLTDCLLVEMEKEKHSAERLYTMDGITVTVADLFFAGTET 282 (476)
T ss_dssp TTSCCSHHHHHHHHHHSSSSCSSCSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHhcccCCCCCcCHHHHHHHHHHHHhcchHH
Confidence 123579999999743221 1234699999999999999999985
No 4
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET: HEM 3QZ; 3.00A {Bos taurus}
Probab=100.00 E-value=3.1e-36 Score=280.08 Aligned_cols=269 Identities=21% Similarity=0.269 Sum_probs=198.0
Q ss_pred HHHhhcCCCCCCCCCCCCCcccccccC-CCCchHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCC
Q 043529 25 SLRLRRRELNLPPGPKPWPIIGNLNLI-GPLPYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRP 103 (307)
Q Consensus 25 ~~~~~~~~~~lpPgP~~lPilGn~~~l-~~~~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~ 103 (307)
..++..++.++||||++ ++++ ..+++..+.+|+++|||||++++|+.++|+++||++++++|.+++..|++||
T Consensus 20 ~~~~~~~~~~lPPGP~~------l~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~~f~~r~ 93 (496)
T 3qz1_A 20 WGRWKLRNLHLPPLVPG------FLHLLQPNLPIHLLSLTQKLGPVYRLRLGLQEVVVLNSKRTIEEAMIRKWVDFAGRP 93 (496)
T ss_dssp ---------CCCCBCSC------SCTTSSSCHHHHHHHGGGTSCSEEEECSSSSCEEEECSTTHHHHTTTTSCSTTCBCC
T ss_pred HhhhhccCCCCCcCCcc------ccccCCCcchHHHHHHHHHhCCEEEEEeCCcCEEEECCHHHHHHHHHhCcHhhCCCC
Confidence 33344455688999986 4455 5678999999999999999999999999999999999999998888999998
Q ss_pred CcCccceeecCCcceEeccCChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHHHHHHHHH
Q 043529 104 KLAAGKYTTFNYSNITWSQYGPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNLLDLNLEV 183 (307)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~t~~i 183 (307)
..........+..+++++.||+.|+++||+++ +.|+.+.++.+.+.++++++.+++.+.+..++++|+.+.+.++++++
T Consensus 94 ~~~~~~~~~~~~~~l~~~~~g~~w~~~Rr~~~-~~f~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~vd~~~~~~~~~~dv 172 (496)
T 3qz1_A 94 QIPSYKLVSQRCQDISLGDYSLLWKAHKKLTR-SALLLGTRSSMEPWVDQLTQEFCERMRVQAGAPVTIQKEFSLLTCSI 172 (496)
T ss_dssp CCTTTTTSCTTCCCSSSSCCSHHHHHHHHHHH-HHHHC--CCCHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHTHHHHHH
T ss_pred CcchHHHhcCCCCceEECCCCHHHHHHHHHHH-HHHhhccHhhHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHH
Confidence 76544433333235566656999999999996 66665556789999999999999999874477999999999999999
Q ss_pred HHHHHhcCccccchhhHHHHHHHHHHHHHhccC--CccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 043529 184 MSRMVLGKKYTNEIVARHEFKEMADELFILGGV--LDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRK 261 (307)
Q Consensus 184 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 261 (307)
|+.++||. ..+.....+.+.+..++..... ..+.+++|+++++|.+ ..++..+..+.+.+++.++|+++++..+
T Consensus 173 i~~~~fG~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~lp~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 248 (496)
T 3qz1_A 173 ICYLTFGN---KEDTLVHAFHDCVQDLMKTWDHWSIQILDMVPFLRFFPNP-GLWRLKQAIENRDHMVEKQLRRHKESMV 248 (496)
T ss_dssp TTTTSTTC---CCHHHHHHHHHHHHTTTTTTSSHHHHHHHHCGGGCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhcCC---CCChHHHHHHHHHHHHHHHhccchhHHHHhHHHHHhCChH-HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999998 2222233444444433333222 2245678988887543 3355667788889999999999987653
Q ss_pred CCCCCCCCCHHHHHhhhcCCC--Ccc-ccCchHHHHHHHHHHhhccCCC
Q 043529 262 GVDNYEAKDMMDVLLQLADDP--TLE-VKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 262 ~~~~~~~~d~ld~ll~~~~~~--~~~-~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
.....|+++.|++...+. +.+ ..++++++.+++.++++|||||
T Consensus 249 ---~~~~~d~l~~ll~~~~~~~~~~~~~~l~~~~i~~~~~~l~~AG~dT 294 (496)
T 3qz1_A 249 ---AGQWRDMTDYMLQGVGRQRVEEGPGQLLEGHVHMSVVDLFIGGTET 294 (496)
T ss_dssp ---SSCCSSSHHHHTTSSTTCCC-----CCCTHHHHHHHHHHHHHHHHH
T ss_pred ---CCCccchHHHHHHHHHhccccCCcccccHHHHHHHHHHHHHhhhHH
Confidence 224679999999843321 111 2699999999999999999985
No 5
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8- benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.7e-35 Score=272.32 Aligned_cols=269 Identities=19% Similarity=0.314 Sum_probs=200.5
Q ss_pred CCCC--CCCCCCCcccccccCCCCchHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCcCccce
Q 043529 33 LNLP--PGPKPWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKLAAGKY 110 (307)
Q Consensus 33 ~~lp--PgP~~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~~~~~ 110 (307)
.++| |||+++|++||++++..+++..+.+|+++|||||++++|+.++|+++||++++++|.+++..|++||.......
T Consensus 13 ~~lp~~PgP~~~p~~G~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~i~~il~~~~~~f~~r~~~~~~~~ 92 (495)
T 2hi4_A 13 KGLKSPPEPWGWPLLGHVLTLGKNPHLALSRMSQRYGDVLQIRIGSTPVLVLSRLDTIRQALVRQGDDFKGRPDLYTSTL 92 (495)
T ss_dssp TTCBCCCCCCCBTTTBTHHHHTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTGGGSCBCCCCHHHHT
T ss_pred CCCCCCCCCCCCcceeeHHhcCccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhcchhhCCCCCcHHHHH
Confidence 3455 99999999999987766789999999999999999999999999999999999999988778998875432222
Q ss_pred eecCCcceEec-cCChhHHHHHHHHHHhhc---CHHHH---H---hhHHHHHHHHHHHHHHHHhh--cCCceechHHHHH
Q 043529 111 TTFNYSNITWS-QYGPYWRQLRKICLMELF---TAKRL---N---SYEYIRVEETMLFLRNLYES--SGKPIILKDNLLD 178 (307)
Q Consensus 111 ~~~~~~~~~~~-~~G~~wk~~Rr~~~~~~~---~~~~l---~---~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~ 178 (307)
+. +..+++++ .+|+.|+++||+++ +.| +..+. + .+++.+.++++.+++.+.+. .++++|+.+.+.+
T Consensus 93 ~~-~~~~l~~~~~~g~~w~~~Rr~~~-~~f~~~s~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~d~~~~~~~ 170 (495)
T 2hi4_A 93 IT-DGQSLTFSTDSGPVWAARRRLAQ-NALNTFSIASDPASSSSCYLEEHVSKEAKALISRLQELMAGPGHFDPYNQVVV 170 (495)
T ss_dssp ST-TSCCTTTSSCCSHHHHHHHHHHH-HHHHHTTTSBCSSCSSCBHHHHHHHHHHHHHHHHHHHHHHTTSCBCHHHHHHH
T ss_pred hc-CCCCEEEcCCCChHHHHHHHHHH-HHHHHhccCcccccchhhhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHH
Confidence 22 22344444 47999999999996 543 32222 1 57889999999999999763 2578999999999
Q ss_pred HHHHHHHHHHhcCccccchhhHHHHHHHHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043529 179 LNLEVMSRMVLGKKYTNEIVARHEFKEMADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNA 258 (307)
Q Consensus 179 ~t~~ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 258 (307)
+++++|+.++||.+++..+.....+.+.++.++.......+.+++|+++++|. +..++..+..+.+.+++.++|+++++
T Consensus 171 ~~~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~lp~-~~~~~~~~~~~~~~~~~~~~i~~r~~ 249 (495)
T 2hi4_A 171 SVANVIGAMCFGQHFPESSDEMLSLVKNTHEFVETASSGNPLDFFPILRYLPN-PALQRFKAFNQRFLWFLQKTVQEHYQ 249 (495)
T ss_dssp HHHHHHHHHHHGGGSCTTCHHHHHHHTTTHHHHTTSSTTCGGGTCGGGGGSCC-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcccchHHHHhHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998764332233343344455544333334577898877653 22345566777888999999999987
Q ss_pred hccCCCCCCCCCHHHHHhhhcCC--CCccccCchHHHHHHHHHHhhccCCC
Q 043529 259 RRKGVDNYEAKDMMDVLLQLADD--PTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 259 ~~~~~~~~~~~d~ld~ll~~~~~--~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
..+ .....|+++.|++..++ .+++..+|+++|.+++.++++|||||
T Consensus 250 ~~~---~~~~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~~~l~~AG~dT 297 (495)
T 2hi4_A 250 DFD---KNSVRDITGALFKHSKKGPRASGNLIPQEKIVNLVNDIFGAGFDT 297 (495)
T ss_dssp TCC---TTCCCSHHHHHHHHHHHCCEETTEECCTHHHHTHHHHHHHHHHHH
T ss_pred hhc---ccccccHHHHHHHHhhhccCccccCCCHHHHHHHHHHHHHhhhhh
Confidence 542 12357999999963211 11134699999999999999999985
No 6
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=100.00 E-value=2.5e-34 Score=265.80 Aligned_cols=272 Identities=20% Similarity=0.296 Sum_probs=194.0
Q ss_pred CCCCCCCCCCCCCcccccccC-CCCchHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCcCccc
Q 043529 31 RELNLPPGPKPWPIIGNLNLI-GPLPYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKLAAGK 109 (307)
Q Consensus 31 ~~~~lpPgP~~lPilGn~~~l-~~~~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~~~~ 109 (307)
.+.+|||||+++|+|||++++ ..+++..+.+|++||||||++++|+.++|+|+||++++++|.+++..|++||.....+
T Consensus 7 s~~kLPPGP~~lP~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~i~~vl~~~~~~f~~r~~~~~~~ 86 (479)
T 3tbg_A 7 SKGKLPPGPLPLPGLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPITQ 86 (479)
T ss_dssp --CCCCCCSCCBTTTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEETTEEEEEEEHHHHHHHHHTTTGGGSCBCCCCGGGG
T ss_pred CCCCCCCCCCCcCcccchHhhcCCCHHHHHHHHHHHhCCEEEEEECCeeEEEECCHHHHHHHHHhCChhhcCCCchHHHH
Confidence 345799999999999999887 5678999999999999999999999999999999999999999999999999766555
Q ss_pred eeecC--CcceEeccCChhHHHHHHHHHHhhcCHHHHH--hhHHHHHHHHHHHHHHHHhhcCCceechHHHHHHHHHHHH
Q 043529 110 YTTFN--YSNITWSQYGPYWRQLRKICLMELFTAKRLN--SYEYIRVEETMLFLRNLYESSGKPIILKDNLLDLNLEVMS 185 (307)
Q Consensus 110 ~~~~~--~~~~~~~~~G~~wk~~Rr~~~~~~~~~~~l~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~t~~ii~ 185 (307)
.+..+ ..+++++.+|+.|+++|++++ +.|+...+. .++..+......+...+....++++|+.+.+.++++++++
T Consensus 87 ~~~~~~~~~~~~~~~~g~~w~~~R~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (479)
T 3tbg_A 87 ILGFGPRSQGVFLARYGPAWREQRRFSV-STLRNLGLGKKSLEQWVTEEAACLCAAFANHSGRPFRPNGLLDKAVSNVIA 165 (479)
T ss_dssp GGTCBTTBCCSTTCCSSHHHHHHHHHHH-HHHHHTTSTTCHHHHHHHHHHHHHHHHHHTTTTCCBCTHHHHHHHHHHHHH
T ss_pred HhccCCCCCceeeCCCCHHHHHHHHHHH-HHhcchhhhHHHHHHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHH
Confidence 44322 234567778999999999986 555443332 3455666666677666665556789999999999999999
Q ss_pred HHHhcCccccchhhHHHHHHHHHHHHHhccCC--ccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 043529 186 RMVLGKKYTNEIVARHEFKEMADELFILGGVL--DIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGV 263 (307)
Q Consensus 186 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 263 (307)
.++||.++...+.......+............ ......|+..++ ..+..+.....+...+.+.+.+++..+..+
T Consensus 166 ~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 241 (479)
T 3tbg_A 166 SLTCGRRFEYDDPRFLRLLDLAQEGLKEESGFLREVLNAVPVLLHI--PALAGKVLRFQKAFLTQLDELLTEHRMTWD-- 241 (479)
T ss_dssp HHHHSCCCCTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHSGGGGGS--HHHHHHHTHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HhhcCCcccccchhhhhhhhhhhhhhhhhhhhhhhhhcccchhccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHhhh--
Confidence 99999998865533333333333333222211 112234443333 222334444556667777777777776553
Q ss_pred CCCCCCCHHHHHhhhc--CCCCccccCchHHHHHHHHHHhhccCCC
Q 043529 264 DNYEAKDMMDVLLQLA--DDPTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 264 ~~~~~~d~ld~ll~~~--~~~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
......|+++.++... .....+..+|++++.+++.++++|||||
T Consensus 242 ~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dT 287 (479)
T 3tbg_A 242 PAQPPRDLTEAFLAEMEKAKGNPESSFNDENLRIVVADLFSAGMVT 287 (479)
T ss_dssp TTSCCCSHHHHHHHHHHHTTTCTTCSCSHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhhhhhhcccCCccchhhHHHHHHHHHHHHhhhhh
Confidence 2234678888877531 2222345799999999999999999985
No 7
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug metabolism, structural genomics, structural genomics consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens} SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Probab=100.00 E-value=1.1e-34 Score=268.95 Aligned_cols=270 Identities=21% Similarity=0.332 Sum_probs=202.1
Q ss_pred CCCCCCCCCCCCcccccccCC-CC--chHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCcCcc
Q 043529 32 ELNLPPGPKPWPIIGNLNLIG-PL--PYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKLAAG 108 (307)
Q Consensus 32 ~~~lpPgP~~lPilGn~~~l~-~~--~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~~~ 108 (307)
+.++||||+++|++||++++. .. ++..+.+|+++|||||++++|+.++|+++||++++++|.+++..|++||.....
T Consensus 10 ~~~lpPgP~~~p~~G~~~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~vl~~~~~~f~~~~~~~~~ 89 (481)
T 3czh_A 10 PMGFPPGPPGLPFIGNIYSLAASSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPCLPLF 89 (481)
T ss_dssp --CCCCCCCCBTTTBHHHHHHHCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEEESHHHHHHHHTTTTTTTCBCCCCHHH
T ss_pred CCCCCCCCCCCcccccHhhcCcccCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhhchHhhCCCCCcHHH
Confidence 457899999999999998763 33 888999999999999999999999999999999999999887889998754322
Q ss_pred ceeecCCcceEeccCChhHHHHHHHHHHhhcCHHHH--HhhHHHHHHHHHHHHHHHHhhcCCceechHHHHHHHHHHHHH
Q 043529 109 KYTTFNYSNITWSQYGPYWRQLRKICLMELFTAKRL--NSYEYIRVEETMLFLRNLYESSGKPIILKDNLLDLNLEVMSR 186 (307)
Q Consensus 109 ~~~~~~~~~~~~~~~G~~wk~~Rr~~~~~~~~~~~l--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~t~~ii~~ 186 (307)
..+.. ..+++++.+|+.|+++||+++ +.|+...+ ..+++.+.++++.+++.+.+..++++|+.+.+.++++++|+.
T Consensus 90 ~~~~~-~~~~~~~~~g~~w~~~R~~~~-~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~d~~~~~~~~~~~vi~~ 167 (481)
T 3czh_A 90 MKMTK-MGGLLNSRYGRGWVDHRRLAV-NSFRYFGYGQKSFESKILEETKFFNDAIETYKGRPFDFKQLITNAVSNITNL 167 (481)
T ss_dssp HHHHT-TCSSTTCCSSHHHHHHHHHHH-HHHHHTTTTSTTHHHHHHHHHHHHHHHHHTTTTCCBCCHHHHHHHHHHHHHH
T ss_pred HhhcC-CCCeEeCCCChHHHHHHHHHH-HHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHHH
Confidence 22222 123455568999999999996 66654432 568899999999999999865456899999999999999999
Q ss_pred HHhcCccccchhhHHHHHHHHHHHHHhccCCc--cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 043529 187 MVLGKKYTNEIVARHEFKEMADELFILGGVLD--IGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVD 264 (307)
Q Consensus 187 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 264 (307)
++||.+++..+.....+.+.+..++....... +.+.+|+++++|.. ..++..+..+.+.+++.++|+++++..+
T Consensus 168 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~lp~~-~~~~~~~~~~~~~~~~~~~i~~r~~~~~--- 243 (481)
T 3czh_A 168 IIFGERFTYEDTDFQHMIELFSENVELAASASVFLYNAFPWIGILPFG-KHQQLFRNAAVVYDFLSRLIEKASVNRK--- 243 (481)
T ss_dssp HHHSSCCCTTCHHHHHHHHHHHHHHHHTTSHHHHHHHHCGGGGGCSSS-HHHHHHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred HHcCCCCCCCCHHHHHHHHHHHHHHhhhccchhHHhhhhHHHHhCCch-HHHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 99999886433333444444555554432211 34678888766432 2345566677888999999999886542
Q ss_pred CCCCCCHHHHHhhhcCC--CCccccCchHHHHHHHHHHhhccCCC
Q 043529 265 NYEAKDMMDVLLQLADD--PTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 265 ~~~~~d~ld~ll~~~~~--~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
...+.|+++.|++...+ .+++..+|+++|++++.++++|||||
T Consensus 244 ~~~~~d~l~~ll~~~~~~~~~~~~~l~~~ei~~~~~~l~~AG~dT 288 (481)
T 3czh_A 244 PQLPQHFVDAYLDEMDQGKNDPSSTFSKENLIFSVGELIIAGTET 288 (481)
T ss_dssp TTCCSSHHHHHHHHHHHTTTCTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHhcccCccccccHHHHHHHHHHHHHhccch
Confidence 12357999999974321 11134699999999999999999985
No 8
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP LM2, cytochro monooxygenase; HET: HEM; 1.60A {Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A* 2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A* 3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Probab=100.00 E-value=7.8e-34 Score=262.82 Aligned_cols=267 Identities=21% Similarity=0.278 Sum_probs=196.6
Q ss_pred CCCCCCCCCCCcccccccC-CCCchHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCcCcccee
Q 043529 33 LNLPPGPKPWPIIGNLNLI-GPLPYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKLAAGKYT 111 (307)
Q Consensus 33 ~~lpPgP~~lPilGn~~~l-~~~~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~~~~~~ 111 (307)
.++||||+++|++||++++ ..+++..+.+|+++|||||++++|+.++|+++||+.++++|.+++..|++|+........
T Consensus 9 ~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~~~~ 88 (476)
T 1po5_A 9 GKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVVDPI 88 (476)
T ss_dssp CCCCCCSCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCGGGGCSC
T ss_pred CCCCcCCCCCCccccHHhccCCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCCcHHHHhh
Confidence 3679999999999999887 567899999999999999999999999999999999999998777889988754333322
Q ss_pred ecCCcceEeccCChhHHHHHHHHHHhhcCHH--HHHhhHHHHHHHHHHHHHHHHhhcCCceechHHHHHHHHHHHHHHHh
Q 043529 112 TFNYSNITWSQYGPYWRQLRKICLMELFTAK--RLNSYEYIRVEETMLFLRNLYESSGKPIILKDNLLDLNLEVMSRMVL 189 (307)
Q Consensus 112 ~~~~~~~~~~~~G~~wk~~Rr~~~~~~~~~~--~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~t~~ii~~~~f 189 (307)
..+ .+ ++..+|+.|+++||++. +.|+.. .++.+.+.+.++++.+++.+.+..++++|+.+.+.++++++|+.++|
T Consensus 89 ~~~-~~-l~~~~g~~w~~~Rr~~~-~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~d~~~~~~~~~~~vi~~~~f 165 (476)
T 1po5_A 89 FQG-YG-VIFANGERWRALRRFSL-ATMRDFGMGKRSVEERIQEEARCLVEELRKSKGALLDNTLLFHSITSNIICSIVF 165 (476)
T ss_dssp CSS-CC-CCCSSHHHHHHHHHHHH-HHHHHSCCCHHHHHHHHHHHHHHHHHHHHHTTTCCBCCHHHHHHHHHHHHHHHHH
T ss_pred cCC-Cc-eEecCCcHHHHHHHHHH-HHHHHhCCChhHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHHHHc
Confidence 222 33 44458999999999985 666554 34678899999999999999765467899999999999999999999
Q ss_pred cCccccchhhHHHHHHHHHHHHHhccCC--cccccccc-ccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 043529 190 GKKYTNEIVARHEFKEMADELFILGGVL--DIGDMIPW-LGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNY 266 (307)
Q Consensus 190 G~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~P~-l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 266 (307)
|.+++..+.....+.+.+...+...... .+.+.+|+ ++++| +..++..+..+.+..++.++|+++++..+ ..
T Consensus 166 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~lp--~~~~~~~~~~~~~~~~~~~~i~~r~~~~~---~~ 240 (476)
T 1po5_A 166 GKRFDYKDPVFLRLLDLFFQSFSLISSFSSQVFELFSGFLKHFP--GTHRQIYRNLQEINTFIGQSVEKHRATLD---PS 240 (476)
T ss_dssp SSCCCTTCHHHHHHHHHHHHHTTTCCTTHHHHHHHTHHHHHTSS--CSHHHHHHHHHHHHHHHHHHHHHHHTTCC---TT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhhhcchhhHHHHhhhHHHHhcC--cHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CC
Confidence 9988643322223333233322211111 12346776 44443 22244556677888999999999886542 12
Q ss_pred CCCCHHHHHhhhcC--CCCccccCchHHHHHHHHHHhhccCCC
Q 043529 267 EAKDMMDVLLQLAD--DPTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 267 ~~~d~ld~ll~~~~--~~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
.+.|+++.|++... +...+..+|+++|++++.++++|||||
T Consensus 241 ~~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dT 283 (476)
T 1po5_A 241 NPRDFIDVYLLRMEKDKSDPSSEFHHQNLILTVLSLFFAGTET 283 (476)
T ss_dssp SCCSHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHhhcccc
Confidence 35799999986322 111134589999999999999999985
No 9
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase, oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB: 1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A* 2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Probab=100.00 E-value=6.8e-34 Score=263.24 Aligned_cols=267 Identities=20% Similarity=0.250 Sum_probs=200.6
Q ss_pred CCCCCCCCCCCcccccccC-CCCchHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCcCcccee
Q 043529 33 LNLPPGPKPWPIIGNLNLI-GPLPYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKLAAGKYT 111 (307)
Q Consensus 33 ~~lpPgP~~lPilGn~~~l-~~~~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~~~~~~ 111 (307)
.++||||+++|++||++++ ..+++..+.+|+++|||||++++|+.++|+++||++++++|.++...|++|+........
T Consensus 9 ~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~~~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~~~~ 88 (476)
T 2fdv_A 9 GKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAEEFSGRGEQATFDWV 88 (476)
T ss_dssp CBCCCCCCCBTTTBTGGGCCTTBHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCCHHHHHH
T ss_pred CCCCCCCCCCcccccHhhcCCcchHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcChHhhCCCCCcHHHhhh
Confidence 3679999999999999887 567889999999999999999999999999999999999998777789888753222222
Q ss_pred ecCCcceEeccCChhHHHHHHHHHHhhcCHHHH--HhhHHHHHHHHHHHHHHHHhhcCCceechHHHHHHHHHHHHHHHh
Q 043529 112 TFNYSNITWSQYGPYWRQLRKICLMELFTAKRL--NSYEYIRVEETMLFLRNLYESSGKPIILKDNLLDLNLEVMSRMVL 189 (307)
Q Consensus 112 ~~~~~~~~~~~~G~~wk~~Rr~~~~~~~~~~~l--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~t~~ii~~~~f 189 (307)
.. ..++ +..+|+.|+++||+++ +.|+...+ +.+.+.+.++++.+++.+.+..++++|+.+.+.++++++++.++|
T Consensus 89 ~~-~~~l-~~~~g~~~~~~Rr~~~-~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~vd~~~~~~~~~~~vi~~~~f 165 (476)
T 2fdv_A 89 FK-GYGV-VFSNGERAKQLRRFSI-ATLRDFGVGKRGIEERIQEEAGFLIDALRGTGGANIDPTFFLSRTVSNVISSIVF 165 (476)
T ss_dssp HT-TCSS-SSCCHHHHHHHHHHHH-HHHHHTTTTSHHHHHHHHHHHHHHHHHHHHTTTCCBCCHHHHHHHHHHHHHHHHH
T ss_pred cC-CCCe-EecCchHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHHHHHHHHc
Confidence 22 2334 4457999999999985 66766544 678899999999999999765467899999999999999999999
Q ss_pred cCccccchhhHHHHHHHHHHHHHhccCC--cccccccc-ccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 043529 190 GKKYTNEIVARHEFKEMADELFILGGVL--DIGDMIPW-LGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNY 266 (307)
Q Consensus 190 G~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~P~-l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 266 (307)
|.+++..+.....+.+.+..++...... .+.+.+|+ ++++| +..++..+..+.+.+++.++|+++++..+ ..
T Consensus 166 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~--~~~~~~~~~~~~~~~~~~~~i~~r~~~~~---~~ 240 (476)
T 2fdv_A 166 GDRFDYKDKEFLSLLRMMLGIFQFTSTSTGQLYEMFSSVMKHLP--GPQQQAFQLLQGLEDFIAKKVEHNQRTLD---PN 240 (476)
T ss_dssp SSCCCTTCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHTTSC--SHHHHHHHHHHHHHHHHHHHHHHHHTTCC---TT
T ss_pred CCcCCCCCHHHHHHHHHHHHHHHhhcccccchhhhhhhHHHhcC--cHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CC
Confidence 9988743333334444444444332211 12346776 55553 33345566777888999999999876542 12
Q ss_pred CCCCHHHHHhhhcCC--CCccccCchHHHHHHHHHHhhccCCC
Q 043529 267 EAKDMMDVLLQLADD--PTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 267 ~~~d~ld~ll~~~~~--~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
.+.|+++.|++..++ ...+..+|+++|.+++.++++|||||
T Consensus 241 ~~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dT 283 (476)
T 2fdv_A 241 SPRDFIDSFLIRMQEEEKNPNTEFYLKNLVMTTLNLFIGGTET 283 (476)
T ss_dssp SCCSHHHHHHHHHHHTTTCTTCSCSHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHhcccCccccccHHHHHHHHHHHHHhcccc
Confidence 357999999974321 11134699999999999999999985
No 10
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme, oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A* 2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Probab=100.00 E-value=5.6e-34 Score=263.80 Aligned_cols=267 Identities=20% Similarity=0.236 Sum_probs=188.8
Q ss_pred CCCCCCCCCCCcccccccC-CCCchHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCcCcccee
Q 043529 33 LNLPPGPKPWPIIGNLNLI-GPLPYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKLAAGKYT 111 (307)
Q Consensus 33 ~~lpPgP~~lPilGn~~~l-~~~~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~~~~~~ 111 (307)
.++||||+++|++||++++ ..+++..+.+|+++|||||++++|+.++|+++||++++++|.++...|++|+........
T Consensus 10 ~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~il~~~~~~f~~~~~~~~~~~~ 89 (477)
T 1r9o_A 10 GKLPPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGRGIFPLAERA 89 (477)
T ss_dssp CBCCCCSSSCC-----CCBCHHHHHHHHHHHHHHHCSEEEEESSSCEEEEECSHHHHHHHHTTTTTTTCEECCCSCCCTT
T ss_pred CCCCCCCCCCceeccHhhcCCCChHHHHHHHHHHhCCEEEEEECCCcEEEECCHHHHHHHHhcccHhhCCCCcchhhhhc
Confidence 3679999999999999887 456788999999999999999999999999999999999998777889988753322222
Q ss_pred ecCCcceEeccCChhHHHHHHHHHHhhcCHH--HHHhhHHHHHHHHHHHHHHHHhhcCCceechHHHHHHHHHHHHHHHh
Q 043529 112 TFNYSNITWSQYGPYWRQLRKICLMELFTAK--RLNSYEYIRVEETMLFLRNLYESSGKPIILKDNLLDLNLEVMSRMVL 189 (307)
Q Consensus 112 ~~~~~~~~~~~~G~~wk~~Rr~~~~~~~~~~--~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~t~~ii~~~~f 189 (307)
..+ .+ ++..+|+.|+++||++. +.|+.. .++.+.+.+.++++.+++.+.+..++++|+.+.+..+++++|+.++|
T Consensus 90 ~~~-~~-l~~~~g~~w~~~Rr~~~-~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~vd~~~~~~~~~~~vi~~~~f 166 (477)
T 1r9o_A 90 NRG-FG-IVFSNGKKWKEIRRFSL-MTLRNFGMGKRSIEDRVQEEARCLVEELRKTKASPCDPTFILGCAPCNVICSIIF 166 (477)
T ss_dssp TCT-TS-STTCCHHHHHHHHHHHH-HHHTTSSSCSSCHHHHHHHHHHHHHHHHHTTTTSCBCTHHHHHHHHHHHHHHHHH
T ss_pred cCC-Cc-eEecCChHHHHHHHHHH-HHHHHhCCChHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHHHHHHHHHHHHHc
Confidence 221 23 44458999999999985 666654 34567899999999999999765467899999999999999999999
Q ss_pred cCccccchhhHHHHHHHHHHHHHhccCC--cccccccc-ccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 043529 190 GKKYTNEIVARHEFKEMADELFILGGVL--DIGDMIPW-LGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNY 266 (307)
Q Consensus 190 G~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~P~-l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 266 (307)
|.+++..+.....+.+.+...+...... .+.+.+|+ ++++| +..++..+..+.+.+++.++|+++++..+ ..
T Consensus 167 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~lp--~~~~~~~~~~~~~~~~~~~~i~~r~~~~~---~~ 241 (477)
T 1r9o_A 167 HKRFDYKDQQFLNLMEKLNENIKILSSPWIQICNNFSPIIDYFP--GTHNKLLKNVAFMKSYILEKVKEHQESMD---MN 241 (477)
T ss_dssp SCCCCTTCHHHHHHHHHHHHHHHHHTCCBC-------CCCSCCT--TCHHHHHHHHHHHHHHHHHHHHHHHHTCC---TT
T ss_pred cCcCCCCCHHHHHHHHHHHHHHHhhccchhHHHhhccHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHHHHhccC---CC
Confidence 9987644322233444444444322211 23446776 44443 22244555677888999999999887542 12
Q ss_pred CCCCHHHHHhhhcC--CCCccccCchHHHHHHHHHHhhccCCC
Q 043529 267 EAKDMMDVLLQLAD--DPTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 267 ~~~d~ld~ll~~~~--~~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
.+.|+++.|++... +...+..+|+++|.+++.++++|||||
T Consensus 242 ~~~d~l~~ll~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dT 284 (477)
T 1r9o_A 242 NPQDFIDCFLMKMEKEKHNQPSEFTIESLENTAVDLFGAGTET 284 (477)
T ss_dssp CCCSHHHHHHHHHHHHTTSCSCSCCHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHhhccccc
Confidence 35799999986322 111134699999999999999999985
No 11
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* 4gl5_A* 4gl7_A*
Probab=100.00 E-value=5.8e-34 Score=265.17 Aligned_cols=260 Identities=15% Similarity=0.119 Sum_probs=189.9
Q ss_pred CCCCCCCCCCCCcccccccCCC----CchHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCcCc
Q 043529 32 ELNLPPGPKPWPIIGNLNLIGP----LPYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKLAA 107 (307)
Q Consensus 32 ~~~lpPgP~~lPilGn~~~l~~----~~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~~ 107 (307)
+.+.||||+++|++||++++.. ..+..+.+|+++|||||++++|+.++|+++||++++++|.+ +.|++|+....
T Consensus 43 ~~~~pPGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~il~~--~~~~~r~~~~~ 120 (503)
T 3s79_A 43 GTSSIPGPGYCMGIGPLISHGRFLWMGIGSACNYYNRVYGEFMRVWISGEETLIISKSSSMFHIMKH--NHYSSRFGSKL 120 (503)
T ss_dssp --CCCCSCCCCSSSHHHHHHHHHHHHCHHHHHHHHHHHSCSEEEEESSSSEEEEECCHHHHHHHHHS--GGGCCCCCCHH
T ss_pred ccCCCCCCCCCceeeehhccccccccchhHHHHHHHHHhCCeEEEEeCCccEEEECCHHHHHHHHhc--CCCCCcchhhh
Confidence 3467999999999999987632 35568889999999999999999999999999999999954 47888875322
Q ss_pred c-ceeecCCcceEeccCChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhc--CCceechHHHHHHHHHHH
Q 043529 108 G-KYTTFNYSNITWSQYGPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESS--GKPIILKDNLLDLNLEVM 184 (307)
Q Consensus 108 ~-~~~~~~~~~~~~~~~G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~t~~ii 184 (307)
. ......+.+++++.+|+.|+++||+++ +.|+...++.+.+.+.+++..+++.+.+.. ++++|+.+.+.+++++++
T Consensus 121 ~~~~~~~~~~~~~~~~~g~~w~~~Rr~~~-~~f~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~vdl~~~~~~~~~~vi 199 (503)
T 3s79_A 121 GLQCIGMHEKGIIFNNNPELWKTTRPFFM-KALSGPGLVRMVTVCAESLKTHLDRLEEVTNESGYVDVLTLLRRVMLDTS 199 (503)
T ss_dssp HHHHHTCTTSSSTTCCCHHHHHHHHHHHH-HHTSTHHHHHHHHHHHHHHHHHHTTGGGTBCTTSCBCHHHHHHHHHHHHH
T ss_pred hhhhhccCCCceeeCCCccHHHHHHHhhh-HhhChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHHHHHH
Confidence 1 111122245566778999999999996 788988899999999999999999887643 568999999999999999
Q ss_pred HHHHhcCccccchhhHHHHHHHHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 043529 185 SRMVLGKKYTNEIVARHEFKEMADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVD 264 (307)
Q Consensus 185 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 264 (307)
+.++||.+++.. .....+.+.++.+...... .++++.+.++ .++..+..+++.+++.++|+++++..+...
T Consensus 200 ~~~~fG~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 270 (503)
T 3s79_A 200 NTLFLRIPLDES-AIVVKIQGYFDAWQALLIK---PDIFFKISWL-----YKKYEKSVKDLKDAIEVLIAEKRRRISTEE 270 (503)
T ss_dssp HHHHTCCCCCHH-HHHHHHHHHHHHHHHHTTC---CHHHHHSGGG-----THHHHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHcCcccCch-hHHHHHHHHHHHHHHHhcC---cHHHhhcchh-----HHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999988532 1222333333333222211 1111111111 234556677888899999999887653211
Q ss_pred -CCCCCCHHHHHhhhcCCCCccccCchHHHHHHHHHHhhccCCC
Q 043529 265 -NYEAKDMMDVLLQLADDPTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 265 -~~~~~d~ld~ll~~~~~~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
.....|+++.|++..+ +..+|++++.+++.++++|||||
T Consensus 271 ~~~~~~d~l~~ll~~~~----~~~l~~~~i~~~~~~~~~AG~~T 310 (503)
T 3s79_A 271 KLEECMDFATELILAEK----RGDLTRENVNQCILEMLIAAPDT 310 (503)
T ss_dssp TTTTTCCHHHHHHHHHH----TTSSCHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHhcc----cCCCCHHHHHHHHHHHHHHcccH
Confidence 1224599999997432 23599999999999999999985
No 12
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold, hemoprotein, monoo cytochrome P450 reductase, endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A* 1tqn_A* 3ua1_A* 3tjs_A*
Probab=100.00 E-value=1.7e-34 Score=267.55 Aligned_cols=261 Identities=18% Similarity=0.216 Sum_probs=185.5
Q ss_pred CCCCCCCCCcccccccCCCCchHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhc-CcccCCCCCcCccceeec
Q 043529 35 LPPGPKPWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTH-DALFSYRPKLAAGKYTTF 113 (307)
Q Consensus 35 lpPgP~~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~-~~~f~~R~~~~~~~~~~~ 113 (307)
.||||+++|++||++++.+.++..+.+|+++|||||++++|+.++|+++||++++++|.++ .+.|++|+...... .
T Consensus 15 ~~PGP~~~PliGn~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~~f~~r~~~~~~~-~-- 91 (485)
T 3nxu_A 15 GIPGPTPLPFLGNILSYHKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPFGPVG-F-- 91 (485)
T ss_dssp TCCCCCCBTTTBTGGGGGGCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTTTTTTTCCCCCCCSCCG-G--
T ss_pred CCCCCCCcCeecCcHHhhcChHHHHHHHHHHcCCeEEEEeCCCCEEEECCHHHHHHHHhccchhhccCCccccccc-c--
Confidence 3899999999999998866788999999999999999999999999999999999999987 67888887543322 1
Q ss_pred CCcceEeccCChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhc--CCceechHHHHHHHHHHHHHHHhcC
Q 043529 114 NYSNITWSQYGPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESS--GKPIILKDNLLDLNLEVMSRMVLGK 191 (307)
Q Consensus 114 ~~~~~~~~~~G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~t~~ii~~~~fG~ 191 (307)
.+++++..+|+.|+++||+++ +.|++++++.+.+.+.++++.+++.+.+.. ++++|+.+.+.++++++|+.++||.
T Consensus 92 -~~~~l~~~~g~~w~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~g~~~d~~~~~~~~~~dvi~~~~fG~ 169 (485)
T 3nxu_A 92 -MKSAISIAEDEEWKRLRSLLS-PTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKDVFGAYSMDVITSTSFGV 169 (485)
T ss_dssp -GGGSTTTCCHHHHHHHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEHHHHHHHHHHHHHHHHHHSC
T ss_pred -cccCccccCCcHHHHHHhhcC-hhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCcHHHHHHHHHHHHHHHHHcCC
Confidence 123455668999999999995 889999999999999999999999997643 7899999999999999999999999
Q ss_pred ccccchhhHHHHHHHHHHHHHhccC---Cccccccccccc----cccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 043529 192 KYTNEIVARHEFKEMADELFILGGV---LDIGDMIPWLGF----LDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVD 264 (307)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~P~l~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 264 (307)
+++..+...+.+.+.+..++..... ......+|++.. ++.... .+...+.+..++.++++++.+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---- 242 (485)
T 3nxu_A 170 NIDSLNNPQDPFVENTKKLLRFDFLDPFFLSITVFPFLIPILEVLNICVF---PREVTNFLRKSVKRMKESRLEDT---- 242 (485)
T ss_dssp CCCGGGCTTCHHHHHHTTSCCCCTTSHHHHHHHHCTTHHHHHHHTTCCSS---CHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred ccccccCCCcHHHHHHHHHhchhhHHHHHHHHHHhhhhHHHHHHhhhhhc---hHHHHHHHHHHHHHHHHHHHhcc----
Confidence 9875432222333322221111000 001233444322 111111 11233344555555555554321
Q ss_pred CCCCCCHHHHHhhhcCCC--CccccCchHHHHHHHHHHhhccCCC
Q 043529 265 NYEAKDMMDVLLQLADDP--TLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 265 ~~~~~d~ld~ll~~~~~~--~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
.....|+++.|++...+. ..+..+|++++++++.++++|||||
T Consensus 243 ~~~~~d~l~~ll~~~~~~~~~~~~~l~~~ei~~~~~~l~~AG~dT 287 (485)
T 3nxu_A 243 QKHRVDFLQLMIDSQNSKETESHKALSDLELVAQSIIFIFAGYET 287 (485)
T ss_dssp ---CCCHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHhhhccccccccCCCHHHHHHHHHHHHHHhhHH
Confidence 223679999999743321 1234699999999999999999985
No 13
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A*
Probab=100.00 E-value=2.8e-33 Score=259.03 Aligned_cols=261 Identities=18% Similarity=0.193 Sum_probs=194.3
Q ss_pred CCCCCCCCCCCCCcccccccC-----CCCchHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCc
Q 043529 31 RELNLPPGPKPWPIIGNLNLI-----GPLPYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKL 105 (307)
Q Consensus 31 ~~~~lpPgP~~lPilGn~~~l-----~~~~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~ 105 (307)
++.+.+|||+++|++||++++ ...++..+.+|+++|||||++++|+.++|+++||+++++++.++ ..|++|+..
T Consensus 21 ~pl~~~PGP~~~p~iG~~~~~~~~~~~~~~~~~~~~l~~~YG~i~~~~~g~~~~vvv~dp~~~~~il~~~-~~~~~r~~~ 99 (482)
T 3k9v_A 21 RNVTDLPGPTNWPLLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMKLGSFDSVHLGSPSLLEALYRTE-SAHPQRLEI 99 (482)
T ss_dssp EEGGGCCCSCCCTTTBTHHHHHHTTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTC-CSSCCCCCC
T ss_pred CCCCCCCCCCCCCccccHHHHhccCCcccHHHHHHHHHHHcCCEEEEccCCCCEEEEcCHHHHHHHHHhc-CCCCCCCCc
Confidence 344558999999999998765 13578899999999999999999999999999999999999874 589888753
Q ss_pred Cc---cceeecCCcceEeccCChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhc---CCceechHHHHHH
Q 043529 106 AA---GKYTTFNYSNITWSQYGPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESS---GKPIILKDNLLDL 179 (307)
Q Consensus 106 ~~---~~~~~~~~~~~~~~~~G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~ 179 (307)
.. ..... +.+.+++..+|+.|+++||+++..+++.+.++.+.+.+.++++.+++.+.+.. |+++|+.+.+.++
T Consensus 100 ~~~~~~~~~~-~~~~~l~~~~g~~w~~~Rr~~~~~f~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~g~~vd~~~~~~~~ 178 (482)
T 3k9v_A 100 KPWKAYRDHR-NEAYGLMILEGQEWQRVRSAFQKKLMKPVEIMKLDKKINEVLADFLERMDELCDERGRIPDLYSELNKW 178 (482)
T ss_dssp HHHHHHHHHH-TCCCCTTTCCHHHHHHHHHHHHHHHTCHHHHGGGHHHHHHHHHHHHHHHHHHCCTTSCCTTHHHHHHHH
T ss_pred hHHHHHHHhc-CCCCCceeCCCchHHHHHHHhhHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 21 11111 12344556689999999999974455888899999999999999999998753 5689999999999
Q ss_pred HHHHHHHHHhcCccccch----hhHHHHHHHHHHHHHhccCCccccccc--cccccccccHHHHHHHHHHHHHHHHHHHH
Q 043529 180 NLEVMSRMVLGKKYTNEI----VARHEFKEMADELFILGGVLDIGDMIP--WLGFLDLQGYIKRMKVLAKKFDRLFEYEL 253 (307)
Q Consensus 180 t~~ii~~~~fG~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~P--~l~~~~~~~~~~~~~~~~~~~~~~~~~~i 253 (307)
++++|+.++||.+++..+ ....++.+.+..++..... ...+| ++++++... .++.....+.+.+++.++|
T Consensus 179 t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~i 254 (482)
T 3k9v_A 179 SFESICLVLYEKRFGLLQKETEEEALTFITAIKTMMSTFGK---MMVTPVELHKRLNTKV-WQAHTLAWDTIFKSVKPCI 254 (482)
T ss_dssp HHHHHHHHHHSCCCCSSSTTSTTSSHHHHHHHHHHHTTGGG---GSSSCHHHHHHHTCHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccccCCCCCCcchHHHHHHHHHHHHHHHHHH---HHhhhHHHHHhcCCHH-HHHHHHHHHHHHHHHHHHH
Confidence 999999999999985432 1234555555555543322 22333 233332222 2344455667777888889
Q ss_pred HHHHhhccCCCCCCCCCHHHHHhhhcCCCCccccCchHHHHHHHHHHhhccCCC
Q 043529 254 DEHNARRKGVDNYEAKDMMDVLLQLADDPTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 254 ~~~~~~~~~~~~~~~~d~ld~ll~~~~~~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
+++++... +....|+++.++.. ..+|++++.+++.++++|||||
T Consensus 255 ~~r~~~~~---~~~~~d~l~~ll~~-------~~l~~~ei~~~~~~~~~AG~dT 298 (482)
T 3k9v_A 255 DNRLQRYS---QQPGADFLCDIYQQ-------DHLSKKELYAAVTELQLAAVET 298 (482)
T ss_dssp HHHHHHTT---TCTTSCHHHHHHHH-------TCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc---cCCchHHHHHHHhc-------cCCCHHHHHHHHHHHHHhhhhh
Confidence 88876542 12357899998872 2489999999999999999985
No 14
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme, oxidoreductase, monooxygenase, sterol biosynthesis, lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A {Trypanosoma brucei} PDB: 3tik_A* 3g1q_A* 3p99_A* 2wv2_A* 2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Probab=100.00 E-value=1.3e-33 Score=259.15 Aligned_cols=264 Identities=13% Similarity=0.159 Sum_probs=203.4
Q ss_pred CCCCCCCCC-CCcccccccCCCCchHHHHHHHHhhC-CceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCcCccce
Q 043529 33 LNLPPGPKP-WPIIGNLNLIGPLPYRSIHALSEKYG-PIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKLAAGKY 110 (307)
Q Consensus 33 ~~lpPgP~~-lPilGn~~~l~~~~~~~~~~~~~kYG-~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~~~~~ 110 (307)
.++||||++ +|++||++++..+++..+.+|+++|| ++|++++|+.++||++||++++++|.+++..|++|+.......
T Consensus 2 ~~~PPg~p~~~P~iG~~~~~~~~~~~~~~~~~~~yG~~i~~~~~~~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~~~~~ 81 (450)
T 3gw9_A 2 GKLPPVYPVTVPILGHIIQFGKSPLGFMQECKRQLKSGIFTINIVGKRVTIVGDPHEHSRFFLPRNEVLSPREVYSFMVP 81 (450)
T ss_dssp CSCCCBCCCCSTTTBTHHHHHHCHHHHHHHHHHHHTCSEEEEEETTEEEEEECCGGGTHHHHSSCTTTEESTGGGGGGHH
T ss_pred CCCCCCCCCCcchhccHHHHccCHHHHHHHHHHHhCCCeEEEEECCEeEEEEeCHHHHHHHHhCChhhccchhhHHHHHH
Confidence 468999665 99999998876678999999999999 9999999999999999999999999988888998875433332
Q ss_pred eecCCcceEeccCChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHH-HHHhhcCCceechHHHHHHHHHHHHHHHh
Q 043529 111 TTFNYSNITWSQYGPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLR-NLYESSGKPIILKDNLLDLNLEVMSRMVL 189 (307)
Q Consensus 111 ~~~~~~~~~~~~~G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~-~l~~~~~~~~~~~~~~~~~t~~ii~~~~f 189 (307)
.. + .++++..+|+.|+++||+++ +.|+.+.++.+.+.+.+++..+++ .+.+ .++++|+.+.+.++++++++.++|
T Consensus 82 ~~-g-~~~~~~~~~~~~~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~ll~~~~~~-~~~~vd~~~~~~~~~~~~i~~~~f 157 (450)
T 3gw9_A 82 VF-G-EGVAYAAPYPRMREQLNFLA-EELTIAKFQNFVPAIQHEVRKFMAANWDK-DEGEINLLEDCSTMIINTACQCLF 157 (450)
T ss_dssp HH-C-TTSGGGSCHHHHHHHHHHHH-HTTSGGGCTTHHHHHHHHHHHHHHHHSCS-SEEEEEHHHHHHHHHHHHHHHHHS
T ss_pred Hh-c-CCcccCCCcHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHhcc-CCCcccHHHHHHHHHHHHHHHHHc
Confidence 22 2 34555567999999999985 788998899999999999999998 5542 245799999999999999999999
Q ss_pred cCccccchhhHHHHHHHHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 043529 190 GKKYTNEIVARHEFKEMADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAK 269 (307)
Q Consensus 190 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 269 (307)
|.++.... ...++.+.+..+.... ..+.+++|+++++|.+ ..++..+..+.+.+++.++|+++++.... .+....
T Consensus 158 G~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~P~l~~lp~~-~~~~~~~~~~~~~~~~~~~i~~r~~~~~~-~~~~~~ 232 (450)
T 3gw9_A 158 GEDLRKRL-DARRFAQLLAKMESSL--IPAAVFLPILLKLPLP-QSARCHEARTELQKILSEIIIARKEEEVN-KDSSTS 232 (450)
T ss_dssp CHHHHHHS-CHHHHHHHHHHHHHTC--CGGGGTCGGGGGSCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSCCCC
T ss_pred Ccchhhhh-hhHHHHHHHHHHHhcc--ccchhcccchhccCCc-hhHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCCccc
Confidence 98875321 1334555444443322 2235678988877543 33455667788889999999988754311 123468
Q ss_pred CHHHHHhhhcCCCCccccCchHHHHHHHHHHhhccCCC
Q 043529 270 DMMDVLLQLADDPTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 270 d~ld~ll~~~~~~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
|+++.|++...++ +..++++++.+++.++++|||||
T Consensus 233 d~l~~ll~~~~~~--~~~l~~~~i~~~~~~~~~AG~dT 268 (450)
T 3gw9_A 233 DLLSGLLSAVYRD--GTPMSLHEVCGMIVAAMFAGQHT 268 (450)
T ss_dssp SHHHHHHHCBCTT--SCBCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccC--CCCCCHHHHHHHHHHHHHHhhhH
Confidence 9999999843222 34699999999999999999985
No 15
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*
Probab=99.97 E-value=2.2e-32 Score=252.05 Aligned_cols=256 Identities=14% Similarity=0.183 Sum_probs=191.8
Q ss_pred CCCCCCCC-CCcccccccCCCCchHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCcCccceee
Q 043529 34 NLPPGPKP-WPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKLAAGKYTT 112 (307)
Q Consensus 34 ~lpPgP~~-lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~~~~~~~ 112 (307)
+.||||++ +|+|||++++.++++..+.+|++||||||++++|+.++|+|+||+.+++++.+++..|+.|+.........
T Consensus 11 ~~PP~~~~~lP~iG~~~~~~~~~~~~~~~~~~kYG~i~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~~~~~~~ 90 (461)
T 3ld6_A 11 KSPPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLTTPV 90 (461)
T ss_dssp CCCCBCCCSSTTTBTHHHHHHCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHHHHHHHH
T ss_pred CCCCCCCCCcCeeeeHHHhhhCHHHHHHHHHHHhCCEEEEEECCccEEEEeCHHHHHHHHhCCccccCCCcchhhhhhcc
Confidence 56788775 99999998887779999999999999999999999999999999999999998888888876432111111
Q ss_pred cCCcceEeccCChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHHHHHHHHHHHHHHhcCc
Q 043529 113 FNYSNITWSQYGPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNLLDLNLEVMSRMVLGKK 192 (307)
Q Consensus 113 ~~~~~~~~~~~G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~t~~ii~~~~fG~~ 192 (307)
.+ .+++++.+|+.|+.+|++++ +.|+.+.++.+.+.+++++..+++.+.+ +..+|+.+.+.++++++++.++||.+
T Consensus 91 ~g-~~~~~~~~~~~~~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~fG~~ 166 (461)
T 3ld6_A 91 FG-KGVAYDVPNPVFLEQKKMLK-SGLNIAHFKQHVSIIEKETKEYFESWGE--SGEKNVFEALSELIILTASHCLHGKE 166 (461)
T ss_dssp HC-TTSGGGSCHHHHHHHHHHHH-HHSSHHHHHHHHHHHHHHHHHHGGGGCS--EEEEEHHHHHHHHHHHHHHHHHTCHH
T ss_pred CC-CccccCCCcHHHHHHHHhcc-ccccHHHHhhhhHHHHHHHHHHHHHHhh--cCCccHHHHHHHHHHHHHHHHHcCcc
Confidence 12 45566778999999999995 7899999999999999999998887765 35789999999999999999999987
Q ss_pred cccchhhHHHHHHHHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHH
Q 043529 193 YTNEIVARHEFKEMADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKDMM 272 (307)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l 272 (307)
+.... ...+.+....+..... .....+|.+ +|.+.+ .+..++.+++.+++.+.|+++++.. ....|++
T Consensus 167 ~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~-~~~~~~~~~l~~~~~~~i~~r~~~~-----~~~~d~l 234 (461)
T 3ld6_A 167 IRSQL--NEKVAQLYADLDGGFS--HAAWLLPGW--LPLPSF-RRRDRAHREIKDIFYKAIQKRRQSQ-----EKIDDIL 234 (461)
T ss_dssp HHHTC--CHHHHHHHHHHHTTSS--HHHHHSCTT--SCCHHH-HHHHHHHHHHHHHHHHHHHHHTTCC-----CCCCSHH
T ss_pred hhhhh--hhhhhhhhhhhhhhhh--hHHHhhhhh--ccCcHH-HHHHHHHHHHHHHHHHHHHHHHhcC-----CCCcchh
Confidence 65321 1223332222222111 112234432 233333 3445567788888888888876532 2367999
Q ss_pred HHHhhhcCCCCccccCchHHHHHHHHHHhhccCCC
Q 043529 273 DVLLQLADDPTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 273 d~ll~~~~~~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
+.|++...++ +..+|+++|++++.++++||+||
T Consensus 235 ~~ll~~~~~~--~~~ls~~ei~~~~~~~~~aG~dT 267 (461)
T 3ld6_A 235 QTLLDATYKD--GRPLTDDEVAGMLIGLLLAGQHT 267 (461)
T ss_dssp HHHHTCBCTT--SCBCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHhhhcc--cCCCCHHHHHHHHHhhhhccccc
Confidence 9999843332 44699999999999999999985
No 16
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A* 1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A* 2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A* 2ij3_A* 2ij4_A* 3hf2_A* ...
Probab=99.97 E-value=5e-31 Score=243.69 Aligned_cols=260 Identities=13% Similarity=0.142 Sum_probs=185.3
Q ss_pred CCCCCCCCCcccccccC-CCCchHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCcCccceeec
Q 043529 35 LPPGPKPWPIIGNLNLI-GPLPYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKLAAGKYTTF 113 (307)
Q Consensus 35 lpPgP~~lPilGn~~~l-~~~~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~~~~~~~~ 113 (307)
.||||+++|++||++++ ...++..+.+|+++|||||++++|+.++|+++||++++++|.+ ..|. ++.......+..
T Consensus 4 ~~PGP~~~p~iG~l~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~~~~~~~il~~--~~f~-~~~~~~~~~~~~ 80 (470)
T 2ij2_A 4 EMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDE--SRFD-KNLSQALKFVRD 80 (470)
T ss_dssp CCCCCCCCGGGTTGGGGCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHTCT--TTEE-ECCCHHHHHHHH
T ss_pred CCCCCCCCCccccHHHHhcccchHHHHHHHHHhCCeEEEecCCccEEEECCHHHHHHHHhh--cCcC-cCchhHHHHHHH
Confidence 47999999999999887 4568889999999999999999999999999999999999964 2463 322111111110
Q ss_pred -CCcceEec-cCChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhc-CCceechHHHHHHHHHHHHHHHhc
Q 043529 114 -NYSNITWS-QYGPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESS-GKPIILKDNLLDLNLEVMSRMVLG 190 (307)
Q Consensus 114 -~~~~~~~~-~~G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~t~~ii~~~~fG 190 (307)
...++.++ .+|+.|+++||+++ +.|+++.++.+.+.+.+++..+++.+.+.. ++++|+.+.+.++++++|+.++||
T Consensus 81 ~~~~~l~~~~~~g~~w~~~Rr~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~vd~~~~~~~~~~~vi~~~~fG 159 (470)
T 2ij2_A 81 FAGDGLFTSWTHEKNWKKAHNILL-PSFSQQAMKGYHAMMVDIAVQLVQKWERLNADEHIEVPEDMTRLTLDTIGLCGFN 159 (470)
T ss_dssp HHTTSGGGSCTTSHHHHHHHHHHG-GGGSTTTHHHHHHHHHHHHHHHHHHHHTCCTTCCEEHHHHHHHHHHHHHHHHHHS
T ss_pred hcCCceEEcCCCchHHHHHHHHhc-cccCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEEHHHHHHHHHHHHHHHHHcC
Confidence 11233333 47999999999995 889999999999999999999999997643 568999999999999999999999
Q ss_pred Cccccch-hhHHHHHHHHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 043529 191 KKYTNEI-VARHEFKEMADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAK 269 (307)
Q Consensus 191 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 269 (307)
.+++..+ .....+.+.+...+...... ....|++.+++ ....++..+..+.+.+++.++|+++++.. ....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~r~~~~-----~~~~ 231 (470)
T 2ij2_A 160 YRFNSFYRDQPHPFITSMVRALDEAMNK--LQRANPDDPAY-DENKRQFQEDIKVMNDLVDKIIADRKASG-----EQSD 231 (470)
T ss_dssp CCCCGGGCSSCCHHHHHHHHHHHHHHHT--C---CTTSGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCS
T ss_pred CcccccccCCCCHHHHHHHHHHHHHHHH--HhhhhhHhhcc-chHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cCch
Confidence 9876431 11122333333322221110 01123443332 12234445566778888999999887643 1257
Q ss_pred CHHHHHhhhcCCCCccccCchHHHHHHHHHHhhccCCC
Q 043529 270 DMMDVLLQLADDPTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 270 d~ld~ll~~~~~~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
|+++.|++...+ ..+..+|+++|.+++.++++|||||
T Consensus 232 dll~~ll~~~~~-~~~~~ls~~ei~~~~~~~~~AG~dT 268 (470)
T 2ij2_A 232 DLLTHMLNGKDP-ETGEPLDDENIRYQIITFLIAGHET 268 (470)
T ss_dssp SHHHHHHHCCCT-TTCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhccCc-ccCCCCCHHHHHHHHHHHHHHhhHH
Confidence 999999984322 1234699999999999999999985
No 17
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein, alternative splicing, cholesterol biosynthesis, endoplasmic reticulum, heme, iron; HET: HEM KLN BCD; 2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Probab=99.97 E-value=3e-31 Score=244.42 Aligned_cols=258 Identities=14% Similarity=0.189 Sum_probs=189.3
Q ss_pred CCCCCCCC-CCCCCcccccccCCCCchHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCcC-cc
Q 043529 31 RELNLPPG-PKPWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKLA-AG 108 (307)
Q Consensus 31 ~~~~lpPg-P~~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~-~~ 108 (307)
+..++||| |+++|++||++++..+++..+.+|+++|||||++++|+.++||++|++.++++|.++...|+.++... ..
T Consensus 8 ~~~~~PPg~P~~lP~iG~l~~~~~~~~~~~~~~~~~yG~v~~l~l~g~~~vvv~~~~~~~~il~~~~~~~~~~~~~~~~~ 87 (461)
T 3i3k_A 8 AGVKSPPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLT 87 (461)
T ss_dssp --CCCCCBCCCSSTTTBTHHHHHHCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHHHHH
T ss_pred CCCCCCCCCCCCCCccccHHhhccCHHHHHHHHHHHhCCEEEEEecCceEEEEeChHHHHHHHhccccccccchHHHHhh
Confidence 45578999 99999999998876678999999999999999999999999999999999999998776666543211 11
Q ss_pred ceeecCCcceEeccCChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHHHHHHHHHHHHHH
Q 043529 109 KYTTFNYSNITWSQYGPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNLLDLNLEVMSRMV 188 (307)
Q Consensus 109 ~~~~~~~~~~~~~~~G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~t~~ii~~~~ 188 (307)
..+. + .++.+..+|+.|+.+||+++ +.|+.+.++.+.+.+.+++..+++.|.+ +..+|+.+.+..++.++++.++
T Consensus 88 ~~~~-g-~g~~~~~~g~~w~~~Rr~~~-~~f~~~~l~~~~~~~~~~~~~ll~~l~~--~~~~dl~~~~~~~~~~~~~~~~ 162 (461)
T 3i3k_A 88 TPVF-G-KGVAYDVPNPVFLEQKKMLK-SGLNIAHFKQHVSIIEKETKEYFESWGE--SGEKNVFEALSELIILTASHCL 162 (461)
T ss_dssp HHHH-C-TTSGGGSCHHHHHHHHHHHH-HHSSHHHHHHHHHHHHHHHHHHGGGGCS--EEEEEHHHHHHHHHHHHHHHHH
T ss_pred hhhc-C-CeeeeCCCcHHHHHHHHHHh-hhhCHHHHHHHHHHHHHHHHHHHHHhhh--cCCcCHHHHHHHHHHHHHHHHH
Confidence 1111 2 34555567999999999995 7789999999999999999999888764 3468999999999999999999
Q ss_pred hcCccccchhhHHHHHHHHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 043529 189 LGKKYTNEIVARHEFKEMADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEA 268 (307)
Q Consensus 189 fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 268 (307)
||.++.... ...+.+.+..+..... .....+|. ++|.+.+ ++..+..+++.+++.+.|+++++.. ...
T Consensus 163 ~G~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~P~--~l~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~ 230 (461)
T 3i3k_A 163 HGKEIRSQL--NEKVAQLYADLDGGFS--HAAWLLPG--WLPLPSF-RRRDRAHREIKDIFYKAIQKRRQSQ-----EKI 230 (461)
T ss_dssp TCHHHHHTC--CHHHHHHHHHHHTTSS--HHHHHSCT--TSCCHHH-HHHHHHHHHHHHHHHHHHHHHTTCC-----CCC
T ss_pred ccHhhhhHH--HHHHHHHHHHHHhccc--cchhhccc--ccCCHHH-HHHHHHHHHHHHHHHHHHHHHHhcc-----ccc
Confidence 998764321 1223333322221111 11223442 3333333 3445667788888999998886532 235
Q ss_pred CCHHHHHhhhcCCCCccccCchHHHHHHHHHHhhccCCC
Q 043529 269 KDMMDVLLQLADDPTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 269 ~d~ld~ll~~~~~~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
.|+++.|++...++ +..+|++++.+++.++++|||||
T Consensus 231 ~d~l~~ll~~~~~~--~~~l~~~~i~~~~~~l~~ag~~T 267 (461)
T 3i3k_A 231 DDILQTLLDATYKD--GRPLTDDEVAGMLIGLLLAGQHT 267 (461)
T ss_dssp CSHHHHHHTCBCTT--SCBCCHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHhhhcc--CCCCCHHHHHHHHHHHHhhccHH
Confidence 79999999843322 34699999999999999999985
No 18
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=99.97 E-value=4e-30 Score=238.29 Aligned_cols=263 Identities=14% Similarity=0.096 Sum_probs=185.5
Q ss_pred CCCCCCCCCCCCcccccccC---C--CCchHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCcC
Q 043529 32 ELNLPPGPKPWPIIGNLNLI---G--PLPYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKLA 106 (307)
Q Consensus 32 ~~~lpPgP~~lPilGn~~~l---~--~~~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~ 106 (307)
+.+.+|||+++|+. |++++ . ..++..+.+|++||||||++++|+.++|+++||++++++|.++ ..|++|+...
T Consensus 7 pL~~~PGP~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~kYG~i~~~~~g~~~~vvv~dp~~~~~il~~~-~~f~~r~~~~ 84 (487)
T 3n9y_A 7 PFNEIPSPGDNGWL-NLYHFWRETGTHKVHLHHVQNFQKYGPIYREKLGNVESVYVIDPEDVALLFKSE-GPNPERFLIP 84 (487)
T ss_dssp CGGGSCCSCSCHHH-HHHHHHHHTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHHTC-CSSCCCCCCH
T ss_pred CHhhCCCCCCCChh-hHHHHHhcCCCcchhHHHHHHHHHcCceeeccCCCCCEEEEcCHHHHHHHHHhC-CCCCCCCCCc
Confidence 33448999988876 76544 1 2578889999999999999999999999999999999999866 4799987532
Q ss_pred ccc-e-eecCCcceEeccCChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhc------CCceechHHHHH
Q 043529 107 AGK-Y-TTFNYSNITWSQYGPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESS------GKPIILKDNLLD 178 (307)
Q Consensus 107 ~~~-~-~~~~~~~~~~~~~G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~------~~~~~~~~~~~~ 178 (307)
... . ...+.+.+++..+|+.|+++||+++..+|+.+.++.+.+.++++++.+++.|.+.. +.++|+.+.+.+
T Consensus 85 ~~~~~~~~~~~~~~l~~~~g~~w~~~Rr~l~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~~~ 164 (487)
T 3n9y_A 85 PWVAYHQYYQRPIGVLLKKSAAWKKDRVALNQEVMAPEATKNFLPLLDAVSRDFVSVLHRRIKKAGSGNYSGDISDDLFR 164 (487)
T ss_dssp HHHHHHHHTTCCCCGGGCCHHHHHHHHHHHHHHHTSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSSSEEECCHHHHHH
T ss_pred HHHHHHHHccccCCCccCCcHHHHHHHHhcCcccCCchHHHHhhhHHHHHHHHHHHHHHHHhcccccCCCCccHHHHHHH
Confidence 211 0 11122345667789999999999964469999999999999999999999997632 347999999999
Q ss_pred HHHHHHHHHHhcCccccch----hhHHHHHHHHHHHHHhccCCcccccccc--ccccccccHHHHHHHHHHHHHHHHHHH
Q 043529 179 LNLEVMSRMVLGKKYTNEI----VARHEFKEMADELFILGGVLDIGDMIPW--LGFLDLQGYIKRMKVLAKKFDRLFEYE 252 (307)
Q Consensus 179 ~t~~ii~~~~fG~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~P~--l~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (307)
+++++|+.++||.+++..+ .....+.+.+..++..... ..++|. +++++...+ ++.....+.+.+++.+.
T Consensus 165 ~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~ 240 (487)
T 3n9y_A 165 FAFESITNVIFGERQGMLEEVVNPEAQRFIDAIYQMFHTSVP---MLNLPPDLFRLFRTKTW-KDHVAAWDVIFSKADIY 240 (487)
T ss_dssp HHHHHHHHHHHSSCCCTTSSSCCHHHHHHHHHHHHHHHHHGG---GTTSCHHHHHHHCHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccCCCCChHHHHHHHHHHHHHHHHHH---HHhcCHHHHhhcccHHH-HHHHHHHHHHHHHHHHH
Confidence 9999999999999986432 1223455544444443221 234443 333322222 22333344445555566
Q ss_pred HHHHHhhcc--CCCCCCCCCHHHHHhhhcCCCCccccCchHHHHHHHHHHhhccCCC
Q 043529 253 LDEHNARRK--GVDNYEAKDMMDVLLQLADDPTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 253 i~~~~~~~~--~~~~~~~~d~ld~ll~~~~~~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
|+++++... ........|+++.|++. ..+++++|.+++.++++|||||
T Consensus 241 i~~~~~~~~~~~~~~~~~~d~l~~ll~~-------~~l~~~ei~~~~~~~~~AG~dT 290 (487)
T 3n9y_A 241 TQNFYWELRQKGSVHHDYRGILYRLLGD-------SKMSFEDIKANVTEMLAGGVDT 290 (487)
T ss_dssp HHHHHHHHHHHCCCCSSCCCHHHHHHHS-------CSSCHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHhcCCcccchHHHHHHHHhc-------CCCCHHHHHHHHHHHHHHhhhh
Confidence 655443221 01112357999999972 2489999999999999999986
No 19
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase, metal-binding, heme, iron; HET: HEM REA; 2.10A {Synechocystis SP} PDB: 2ve4_A*
Probab=99.97 E-value=3e-30 Score=236.77 Aligned_cols=250 Identities=16% Similarity=0.143 Sum_probs=183.0
Q ss_pred CCCCCCCCCCCCCcccccccCCCCchHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCcCccce
Q 043529 31 RELNLPPGPKPWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKLAAGKY 110 (307)
Q Consensus 31 ~~~~lpPgP~~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~~~~~ 110 (307)
++.++||||+++|++||++.+..+++ .+.+++++|||+|++++++.++|+++||+++++++.+++..|+.+... ....
T Consensus 9 ~~~~~pPgp~~~P~iG~~~~~~~~~~-~~~~~~~~yg~v~~~~~~g~~~vvv~~~~~~~~il~~~~~~~~~~~~~-~~~~ 86 (444)
T 2ve3_A 9 NSLPIPPGDFGLPWLGETLNFLNDGD-FGKKRQQQFGPIFKTRLFGKNVIFISGALANRFLFTKEQETFQATWPL-STRI 86 (444)
T ss_dssp CCCCCCCCCCCBTTTBTHHHHHHCTT-HHHHHHHHHCSSEEEEETTEEEEEECSHHHHHHHTSSCTTTEEEECCH-HHHH
T ss_pred CCCCCCCCCCCCCccccHHHHhcCcH-HHHHHHHHcCCeEEEeeCCCCEEEEcCHHHHHHHHhCCCcccccchhH-HHHH
Confidence 34577999999999999977633456 788999999999999988889999999999999998776667744321 1111
Q ss_pred eecCCcceEeccCChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHHHHHHHHHHHHHHhc
Q 043529 111 TTFNYSNITWSQYGPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNLLDLNLEVMSRMVLG 190 (307)
Q Consensus 111 ~~~~~~~~~~~~~G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~t~~ii~~~~fG 190 (307)
+. + ..+++..+|+.|+.+||+++ +.|++++++.+.+.++++++.+++.|.. ++++|+.+.+.++++++++.++||
T Consensus 87 ~~-g-~~~l~~~~g~~~~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~--~~~vd~~~~~~~~~~~vi~~~~fG 161 (444)
T 2ve3_A 87 LL-G-PNALATQMGEIHRSRRKILY-QAFLPRTLDSYLPKMDGIVQGYLEQWGK--ANEVIWYPQLRRMTFDVAATLFMG 161 (444)
T ss_dssp HH-C-TTSGGGCCHHHHHHHHHHHH-GGGCHHHHHTTHHHHHHHHHHHHHHHHH--SSEEEHHHHHHHHHHHHHHHHHTC
T ss_pred Hh-C-ccccccCCchHHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHHHHHHhcC--CCcEeHHHHHHHHHHHHHHHHHcC
Confidence 11 2 22344467999999999995 8899999999999999999999999864 578999999999999999999999
Q ss_pred CccccchhhHHHHHHHHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 043529 191 KKYTNEIVARHEFKEMADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKD 270 (307)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d 270 (307)
+....+ .++.+.+..+...... +...+|. ..+ ++..+..+.+.+++.++|+++++.. ....|
T Consensus 162 -~~~~~~---~~~~~~~~~~~~~~~~--~~~~~p~------~~~-~~~~~~~~~~~~~~~~~i~~r~~~~-----~~~~d 223 (444)
T 2ve3_A 162 -EKVSQN---PQLFPWFETYIQGLFS--LPIPLPN------TLF-GKSQRARALLLAELEKIIKARQQQP-----PSEED 223 (444)
T ss_dssp -HHHHSC---TTHHHHHHHHHHHHSS--CCCCSTT------SHH-HHHHHHHHHHHHHHHHHHHHHHTSC-----CCCSS
T ss_pred -CCcccH---HHHHHHHHHHHHHHhc--CCccCCC------cHH-HHHHHHHHHHHHHHHHHHHHHhcCC-----CCccC
Confidence 332211 2333333333322211 1112221 122 3344566778888999999887532 23579
Q ss_pred HHHHHhhhcCCCCccccCchHHHHHHHHHHhhccCCC
Q 043529 271 MMDVLLQLADDPTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 271 ~ld~ll~~~~~~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
+++.|++...++ +..+|++++.+++.++++|||||
T Consensus 224 ~l~~ll~~~~~~--~~~l~~~~i~~~~~~~~~AG~~T 258 (444)
T 2ve3_A 224 ALGILLAARDDN--NQPLSLPELKDQILLLLFAGHET 258 (444)
T ss_dssp HHHHHHHCBCTT--SCBCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccC--CCCCCHHHHHHHHHHHHHHcchH
Confidence 999999843221 34699999999999999999985
No 20
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding, monooxygenase, NADP, oxidoreductase, protein-inhibitor complex; HET: HEM CM6; 1.50A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A* 2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A* 1e9x_A* 1u13_A*
Probab=99.97 E-value=9.3e-30 Score=234.24 Aligned_cols=255 Identities=14% Similarity=0.157 Sum_probs=173.4
Q ss_pred CCCCC-CCCCCcccccccCCCCchHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCcCccceee
Q 043529 34 NLPPG-PKPWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKLAAGKYTT 112 (307)
Q Consensus 34 ~lpPg-P~~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~~~~~~~ 112 (307)
++||| |.++|++||++++..+++..+.+|+++|||||++++|+.++++++||+++++++.+++..|+.++.........
T Consensus 4 ~~PPg~p~~~P~iG~~~~~~~~~~~~~~~l~~~yG~v~~~~~~~~~~~vv~~~~~~~~il~~~~~~~~~~~~~~~~~~~~ 83 (455)
T 2cib_A 4 VALPRVSGGHDEHGHLEEFRTDPIGLMQRVRDELGDVGTFQLAGKQVVLLSGSHANEFFFRAGDDDLDQAKAYPFMTPIF 83 (455)
T ss_dssp -CCCBCSCCCBTTBTHHHHTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEECTTSCGGGHHHH
T ss_pred CCCCCCCCCCCCccCHHHHhhChHHHHHHHHHHcCCEEEEEeCCceEEEECCHHHHHHHHhcCccccCcccchhHHHhhc
Confidence 67998 88999999998876678999999999999999999999999999999999999987777888886432222111
Q ss_pred cCCcceEeccCChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHHHHHHHHHHHHHHhcCc
Q 043529 113 FNYSNITWSQYGPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNLLDLNLEVMSRMVLGKK 192 (307)
Q Consensus 113 ~~~~~~~~~~~G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~t~~ii~~~~fG~~ 192 (307)
+ . +++ .+|+.|+++|++++ +.|+++.++.+.+.+.++++.+++.+.. ++++|+.+.+.++++++++.++||.+
T Consensus 84 -g-~-~~~-~~~~~~~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~~~~--~~~vd~~~~~~~~~~~vi~~~~fG~~ 156 (455)
T 2cib_A 84 -G-E-GVV-FDASPERRKEMLHN-AALRGEQMKGHAATIEDQVRRMIADWGE--AGEIDLLDFFAELTIYTSSACLIGKK 156 (455)
T ss_dssp -C------------------------CCHHHHHHHHHHHHHHHHHHHTTCCS--EEEEEHHHHHHHHHHHHHHHHHTCHH
T ss_pred -C-C-ccc-cCcHHHHHHHhhhc-cccCHHHHHHHHHHHHHHHHHHHHHhCC--CCcEeHHHHHHHHHHHHHHHHHcCCC
Confidence 1 2 233 36999999999994 8899999999999999999999988654 35799999999999999999999998
Q ss_pred cccchhhHHHHHHHHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHH
Q 043529 193 YTNEIVARHEFKEMADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKDMM 272 (307)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l 272 (307)
+.... ..++.+.+..+..... .+..++|++ +...+ ++.....+.+.+++.++|+++++... .....+|++
T Consensus 157 ~~~~~--~~~~~~~~~~~~~~~~--~~~~~~p~l---~~~~~-~~~~~~~~~~~~~~~~~i~~r~~~~~--~~~~~~dll 226 (455)
T 2cib_A 157 FRDQL--DGRFAKLYHELERGTD--PLAYVDPYL---PIESF-RRRDEARNGLVALVADIMNGRIANPP--TDKSDRDML 226 (455)
T ss_dssp HHTTC--CHHHHHHHHHHHTTCC--GGGGTCTTC---SCHHH-HHHHHHHHHHHHHHHHHHHHHHHCC-------CCCHH
T ss_pred cchhh--hHHHHHHHHHHHhhhh--HHHHhcccC---CChhH-HHHHHHHHHHHHHHHHHHHHHHhccc--CCCCcccHH
Confidence 75321 1244444444432211 122345542 22222 33455677788899999999876432 111134999
Q ss_pred HHHhhhcCCCCcccc-CchHHHHHHHHHHhhccCCC
Q 043529 273 DVLLQLADDPTLEVK-LERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 273 d~ll~~~~~~~~~~~-lt~~~i~~~~~~l~~aG~~~ 307 (307)
+.|++...++ +.. +|+++|.+++.++++|||||
T Consensus 227 ~~ll~~~~~~--~~~~l~~~~i~~~~~~l~~AG~eT 260 (455)
T 2cib_A 227 DVLIAVKAET--GTPRFSADEITGMFISMMFAGHHT 260 (455)
T ss_dssp HHHHHCBCTT--SSBSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhc--CCCCCCHHHHHHHHHHHHHhcccc
Confidence 9999843221 234 99999999999999999985
No 21
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1, molecular mechanism, heme, iron, metal-binding, monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor A3} PDB: 3el3_A*
Probab=99.96 E-value=6.7e-30 Score=235.87 Aligned_cols=253 Identities=17% Similarity=0.189 Sum_probs=163.1
Q ss_pred CCCCCCCCCCcccccccCCCCchHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCcC-ccceee
Q 043529 34 NLPPGPKPWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKLA-AGKYTT 112 (307)
Q Consensus 34 ~lpPgP~~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~-~~~~~~ 112 (307)
..||||+++|++||++++..+++..+.++++ |||||++++|+.++++|+||+++++++.++ .|+.++... ......
T Consensus 23 eppPgP~~~P~iG~~~~~~~~p~~~~~~l~~-yGpv~~~~~g~~~~~vv~~~~~i~~il~~~--~~~~~~~~~~~~~~~~ 99 (467)
T 3dbg_A 23 EPPVAGGGVPLLGHGWRLARDPLAFMSQLRD-HGDVVRIKLGPKTVYAVTNPELTGALALNP--DYHIAGPLWESLEGLL 99 (467)
T ss_dssp BCCEECCCCSTTHHHHHHHHCHHHHHHHHGG-GCSEEEEEETTEEEEEECSHHHHHHHHHCT--TC--------------
T ss_pred CCCCCCCCCCcccchHHhccCHHHHHHHHHH-hCCEEEEEeCCccEEEECCHHHHHHHHhCc--CcccccchHHHHHHhc
Confidence 3489999999999998876678888999877 999999999999999999999999999876 675544321 112111
Q ss_pred cCCcceEeccCChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHHHHHHHHHHHHHHhcCc
Q 043529 113 FNYSNITWSQYGPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNLLDLNLEVMSRMVLGKK 192 (307)
Q Consensus 113 ~~~~~~~~~~~G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~t~~ii~~~~fG~~ 192 (307)
+ .++++..+|+.|+++||+++ +.|+++.++.+.+.+.++++.+++.+.+ ++++|+.+.+.++++++++.++||.+
T Consensus 100 -g-~~~l~~~dg~~h~~~R~~l~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~--~~~~d~~~~~~~~~~~vi~~~~~g~~ 174 (467)
T 3dbg_A 100 -G-KEGVATANGPLHRRQRRTIQ-PAFRLDAIPAYGPIMEEEAHALTERWQP--GKTVDATSESFRVAVRVAARCLLRGQ 174 (467)
T ss_dssp ------------------CGGGH-HHHSTTTSTTTHHHHHHHHHHHHHHSCT--TSCEEHHHHHHHHHHHHHHHHHSCSS
T ss_pred -C-CCCcccCCcHHHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHhcc--CCcCcHHHHHHHHHHHHHHHHHhCCc
Confidence 1 13456678999999999995 8889999999999999999999998865 57899999999999999999999998
Q ss_pred cccchhhHHHHHHHHHHHHHhccCCcccccccc--ccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 043529 193 YTNEIVARHEFKEMADELFILGGVLDIGDMIPW--LGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKD 270 (307)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~--l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d 270 (307)
+... ....+.+.+..++.... ...++|+ +.++|.+. .++..+..+.+.+++.++|+++++.. ....|
T Consensus 175 ~~~~--~~~~~~~~~~~~~~~~~---~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~r~~~~-----~~~~d 243 (467)
T 3dbg_A 175 YMDE--RAERLCVALATVFRGMY---RRMVVPLGPLYRLPLPA-NRRFNDALADLHLLVDEIIAERRASG-----QKPDD 243 (467)
T ss_dssp CCHH--HHHHHHHHHHHHHHC----------------------------CCHHHHHHHHHHHHHHHTTCC-----SSCCS
T ss_pred ccch--hHHHHHHHHHHHHHHHH---HHhccchhhhhhCCChH-hHHHHHHHHHHHHHHHHHHHHHHhcC-----CCchH
Confidence 8642 23344444444443221 1234442 33333222 23445566778888888998886532 23579
Q ss_pred HHHHHhhhcCCCCccccCchHHHHHHHHHHhhccCCC
Q 043529 271 MMDVLLQLADDPTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 271 ~ld~ll~~~~~~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
+++.|++...++ +..+|++++.+++.++++|||||
T Consensus 244 ll~~ll~~~~~~--~~~ls~~ei~~~~~~l~~AG~eT 278 (467)
T 3dbg_A 244 LLTALLEAKDDN--GDPIGEQEIHDQVVAILTPGSET 278 (467)
T ss_dssp HHHHHTTC----------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCC--CCCCCHHHHHHHHHHHHHHhHHH
Confidence 999999843221 23699999999999999999985
No 22
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide monooxygenase, antibiotic biosynthesis, heme, iron, metal-binding; HET: HEM PXI; 1.7A {Streptomyces venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A* 2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Probab=99.96 E-value=7.6e-29 Score=226.98 Aligned_cols=240 Identities=18% Similarity=0.207 Sum_probs=171.2
Q ss_pred CCCCCCCCCCCCCcccccc-cCCCCchHHHHHHHHhhCCceEEec-CCcCEEEecCHHHHHHHHHhcCcccCCCCCcCcc
Q 043529 31 RELNLPPGPKPWPIIGNLN-LIGPLPYRSIHALSEKYGPIMQLKF-GSFPVVVGSSVEMAEAFLKTHDALFSYRPKLAAG 108 (307)
Q Consensus 31 ~~~~lpPgP~~lPilGn~~-~l~~~~~~~~~~~~~kYG~i~~~~l-g~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~~~ 108 (307)
+..+.||||+++|++||+. .+..+++..+.++ ++|||||++++ |+.++|+++||++++++|.++ .|++|+.....
T Consensus 23 ~~~~~~PGP~~~p~lG~~~~~~~~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~ 99 (436)
T 2cd8_A 23 RTQQGTTASPPVLDLGALGQDFAADPYPTYARL-RAEGPAHRVRTPEGDEVWLVVGYDRARAVLADP--RFSKDWRNSTT 99 (436)
T ss_dssp -----------CCBHHHHHHHHHHCCHHHHHHH-HTTCSEEEEECSSCCEEEEECSHHHHHHHHHCT--TEECCGGGCSS
T ss_pred hhccCCCCCCccccCCCCCcccccChHHHHHHH-HHhCCeeeeccCCCCeEEEEcCHHHHHHHHcCC--CCccccccccc
Confidence 3446699999999999986 3455688899999 99999999998 788999999999999999876 68888642111
Q ss_pred ceee--cCCcceEeccCChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHH-HHHHHHHHH
Q 043529 109 KYTT--FNYSNITWSQYGPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNL-LDLNLEVMS 185 (307)
Q Consensus 109 ~~~~--~~~~~~~~~~~G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~t~~ii~ 185 (307)
.... ...+.+++..+|+.|+++||+++ +.|+++.++.+.+.+.++++.+++.|.+..++++|+.+.+ ..+++++++
T Consensus 100 ~~~~~~~~~~~~l~~~dg~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~vd~~~~~~~~~~~~vi~ 178 (436)
T 2cd8_A 100 PLTEAEAALNHNMLESDPPRHTRLRKLVA-REFTMRRVELLRPRVQEIVDGLVDAMLAAPDGRADLMESLAWPLPITVIS 178 (436)
T ss_dssp CCCTTGGGTCCSGGGCCTTHHHHHHHHHG-GGSSHHHHHTTHHHHHHHHHHHHHHHHTCTTSCEEHHHHTTTHHHHHHHH
T ss_pred ccccccccccccccccCchHHHHHHHHhH-HhhCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHH
Confidence 1100 11123345568999999999995 8899999999999999999999999984225689999877 579999999
Q ss_pred HHHhcCccccchhhHHHHHHHHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 043529 186 RMVLGKKYTNEIVARHEFKEMADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDN 265 (307)
Q Consensus 186 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 265 (307)
. +||.+.+. ...+.+..+.++.. . + + ++..+..+++.+++.++|+++++.
T Consensus 179 ~-~~G~~~~~----~~~~~~~~~~~~~~------~---~-----~-----~~~~~~~~~~~~~~~~~i~~r~~~------ 228 (436)
T 2cd8_A 179 E-LLGVPEPD----RAAFRVWTDAFVFP------D---D-----P-----AQAQTAMAEMSGYLSRLIDSKRGQ------ 228 (436)
T ss_dssp H-HHTCCGGG----HHHHHHHHHHHHSC------S---S-----T-----THHHHHHHHHHHHHHHHHHHHTTS------
T ss_pred H-HhCCCHHH----HHHHHHHHHHHhcc------C---C-----H-----HHHHHHHHHHHHHHHHHHHHHhcC------
Confidence 7 79987642 23444444433310 0 1 0 123456667788888888887642
Q ss_pred CCCCCHHHHHhhhcCCCCccccCchHHHHHHHHHHhhccCCC
Q 043529 266 YEAKDMMDVLLQLADDPTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 266 ~~~~d~ld~ll~~~~~~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
...|+++.|++...+ ++..+|+++|.+++.++++|||||
T Consensus 229 -~~~d~l~~ll~~~~~--~~~~ls~~ei~~~~~~l~~AG~eT 267 (436)
T 2cd8_A 229 -DGEDLLSALVRTSDE--DGSRLTSEELLGMAHILLVAGHET 267 (436)
T ss_dssp -CCCSHHHHHHHHHHH--CTTTSCHHHHHHHHHHHHHTTHHH
T ss_pred -CCCCHHHHHHHhhhc--cCCCCCHHHHHHHHHHHHHHhhHH
Confidence 246999999974322 134699999999999999999985
No 23
>3v8d_A Cholesterol 7-alpha-monooxygenase; cytochrome, oxidoreductase; HET: HEM 0GV; 1.90A {Homo sapiens} PDB: 3sn5_A* 3dax_A*
Probab=99.95 E-value=2.1e-28 Score=227.12 Aligned_cols=256 Identities=13% Similarity=0.074 Sum_probs=179.1
Q ss_pred cCCCCCCCCCCC-CCcccccccCCCCchHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcC-cccCCCCCcCc
Q 043529 30 RRELNLPPGPKP-WPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHD-ALFSYRPKLAA 107 (307)
Q Consensus 30 ~~~~~lpPgP~~-lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~-~~f~~R~~~~~ 107 (307)
++..++||||++ +|++||++.+..+++..+.+|+++|||||++++|+.++|||+||++++++|.++. -.|++++....
T Consensus 9 ~~~~~~PPgp~~~lPliG~~~~~~~~p~~~~~~l~~~yGpv~~~~lg~~~~vvv~~p~~v~~vl~~~~~~~~~~~~~~~~ 88 (491)
T 3v8d_A 9 RRQTGEPPLENGLIPYLGCALQFGANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKYFDWKKFHFALS 88 (491)
T ss_dssp CCCTTSCCEEEEEESSTTTTGGGTCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHSCCTTEESSHHHHHHH
T ss_pred ccCCCCCCCCCCCcceeccHHHHhcCHHHHHHHHHHHcCCceEEEECCEEEEEEcCHHHHHHHHhcCCccchHHHHHHHH
Confidence 445678999999 6999999988778999999999999999999999999999999999999997554 23444432211
Q ss_pred cceeecCCcceEeccCChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhc-----CCceechHHHHHHHHH
Q 043529 108 GKYTTFNYSNITWSQYGPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESS-----GKPIILKDNLLDLNLE 182 (307)
Q Consensus 108 ~~~~~~~~~~~~~~~~G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~-----~~~~~~~~~~~~~t~~ 182 (307)
.. .. + .+.....+|+.|+++||.+. ++|++++++.+.+.+.+++..+++.+.... ....++.+.+.+++.+
T Consensus 89 ~~-~~-g-~~~~~~~~g~~~~~~Rr~~~-~~f~~~~l~~~~~~i~~~~~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 164 (491)
T 3v8d_A 89 AK-AF-G-HRSIDPMDGNTTENINDTFI-KTLQGHALNSLTESMMENLQRIMRPPVSSNSKTAAWVTEGMYSFCYRVMFE 164 (491)
T ss_dssp HH-HH-T-CCCCCGGGSSBCCCHHHHHH-HHHSHHHHHHHHHHHHHHHHHHHSCCSSCGGGGCSCEEEEHHHHHHHHHHH
T ss_pred HH-hc-C-CcccccccchhHHHHHHHHH-HHcCccchHHHHHHHHHHHHHHHHhhhhcccCCCCCcccCHHHHHHHHHHH
Confidence 11 11 2 23333457999999999884 789999999999999999999887542211 2457899999999999
Q ss_pred HHHHHHhcCccccchhhHHHHHHHHHHHHHhccCCccccccccccc-cccccHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 043529 183 VMSRMVLGKKYTNEIVARHEFKEMADELFILGGVLDIGDMIPWLGF-LDLQGYIKRMKVLAKKFDRLFEYELDEHNARRK 261 (307)
Q Consensus 183 ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 261 (307)
+++..+||.+....+.....+.+.++.+... .+.+|.+.+ +|.. ..++..++.+++.+++...+.++ .
T Consensus 165 ~~~~~~fG~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~p~~-~~~~~~~a~~~l~~~~~~~~~~~---~- 233 (491)
T 3v8d_A 165 AGYLTIFGRDLTRRDTQKAHILNNLDNFKQF------DKVFPALVAGLPIH-MFRTAHNAREKLAESLRHENLQK---R- 233 (491)
T ss_dssp HHHHHHHCBCCSCGGGHHHHHHHHHHHHHHH------HHHHHHHHTTCCGG-GCHHHHHHHHHHHHHTSHHHHTT---C-
T ss_pred HHHHHHcCccccccchhhhhhHHHHHHHHHH------HHHHHHHHhcCChH-HHHHHHHHHHHHHHHHHHHHHhc---c-
Confidence 9999999998764332233344333333221 233443322 2222 22344445555555444433322 1
Q ss_pred CCCCCCCCCHHHHHhhhcCCCCccccCchHHHHHHHHHHhhccCCC
Q 043529 262 GVDNYEAKDMMDVLLQLADDPTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 262 ~~~~~~~~d~ld~ll~~~~~~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
....|+++.+++...+ +..++++++..++..+++|||||
T Consensus 234 ----~~~~d~l~~l~~~~~~---~~~~~~~ei~~~~~~~~~ag~~t 272 (491)
T 3v8d_A 234 ----ESISELISLRMFLNDT---LSTFDDLEKAKTHLVVLWASQAN 272 (491)
T ss_dssp ----BSCCHHHHHHHHHHHH---HBCCCHHHHHHHHHHHHHHHHTT
T ss_pred ----ccccHHHHHHHHHhhc---cCCCchHHHHHHHHHHHHHhHHH
Confidence 1257899999874322 23589999999999999999986
No 24
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide, monooxygenase, metab enzyme, oxidoreductase, heme, cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A* 4enh_A* 4fia_A*
Probab=99.95 E-value=3e-26 Score=210.63 Aligned_cols=243 Identities=13% Similarity=0.128 Sum_probs=172.8
Q ss_pred CCCchHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCcCc-cceee---cCCcceEeccCChhH
Q 043529 52 GPLPYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKLAA-GKYTT---FNYSNITWSQYGPYW 127 (307)
Q Consensus 52 ~~~~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~~-~~~~~---~~~~~~~~~~~G~~w 127 (307)
+..+|..+.+|+++|||||++++|+.++|+++||++++++|.+ ..|..++.... ..... ..+.+++++.+|+.|
T Consensus 9 g~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~p~~~~~il~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~w 86 (456)
T 3mdm_A 9 GRVLQDVFLDWAKKYGPVVRVNVFHKTSVIVTSPESVKKFLMS--TKYNKDSKMYRALQTVFGERLFGQGLVSECNYERW 86 (456)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTC--TTSCCCHHHHHHHHEETTEESSTTSTTTCCCHHHH
T ss_pred cchHHHHHHHHHHHhCCeEEEEeCCCCEEEECCHHHHHHHHhh--ccccccchhHHHHHHhhcccccCCCcccCCChHHH
Confidence 4568999999999999999999999999999999999999964 34665543110 00000 011234445589999
Q ss_pred HHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhc--CCceechHHHHHHHHHHHHHHHhcCccccchhhHHHHHH
Q 043529 128 RQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESS--GKPIILKDNLLDLNLEVMSRMVLGKKYTNEIVARHEFKE 205 (307)
Q Consensus 128 k~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~t~~ii~~~~fG~~~~~~~~~~~~~~~ 205 (307)
+++||+++ +.|+++.++.+.+.+.++++.+++.+.+.. +.++|+.+.+.++++++++.++||.+++.......++.+
T Consensus 87 ~~~Rr~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~fG~~~~~~~~~~~~~~~ 165 (456)
T 3mdm_A 87 HKQRRVID-LAFSRSSLVSLMETFNEKAEQLVEILEAKADGQTPVSMQDMLTYTAMDILAKAAFGMETSMLLGAQKPLSQ 165 (456)
T ss_dssp HHHHHHHG-GGGSHHHHHTTHHHHHHHHHHHHHHHHHTCSSSSCEEHHHHHHHHHHHHHHHHHHSCCCCGGGTCCHHHHH
T ss_pred HHHHhhcc-cccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHHHHHHHHHHcCCChhhhcccccHHHH
Confidence 99999995 889999999999999999999999998754 468999999999999999999999998754322223333
Q ss_pred HHHHHHHhccCCccccccccccccccc-cHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHhhhcCCCCc
Q 043529 206 MADELFILGGVLDIGDMIPWLGFLDLQ-GYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKDMMDVLLQLADDPTL 284 (307)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~P~l~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~ld~ll~~~~~~~~ 284 (307)
.+..++..... ...|+++++|.. ...+......+.+..++..+|+++++.... ....+.|+++.+++.. +
T Consensus 166 ~~~~~~~~~~~----~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~-~~~~~~d~l~~ll~~~-~--- 236 (456)
T 3mdm_A 166 AVKLMLEGITA----SRNTLAKFLPGKRKQLREVRESIRFLRQVGRDWVQRRREALKR-GEEVPADILTQILKAE-E--- 236 (456)
T ss_dssp HHHHHHHHHHH----HHHSCGGGCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCCCCHHHHHHHHT-S---
T ss_pred HHHHHHHHHHH----HHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccchhhHHHHHHHhc-C---
Confidence 33333322111 012233333211 112334455666777888888888765431 1223579999999842 1
Q ss_pred cccCchHHHHHHHHHHhhccCCC
Q 043529 285 EVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 285 ~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
..++++++.+++.++++|||||
T Consensus 237 -~~~~~~~l~~~~~~l~~AG~dT 258 (456)
T 3mdm_A 237 -GAQDDEGLLDNFVTFFIAGHET 258 (456)
T ss_dssp -SCSSSHHHHHHHHHHHHHTTHH
T ss_pred -CCCCHHHHHHHHHHHHHHHHHH
Confidence 2478999999999999999985
No 25
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR, atomic resolutio structural genomics/proteomics initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum} SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A* 1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A* 1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Probab=99.94 E-value=5.4e-26 Score=206.00 Aligned_cols=235 Identities=9% Similarity=0.055 Sum_probs=169.9
Q ss_pred CCCCCCCCCcccccccCCCCchHHHHHHHHhhCCceEEecC-CcCEEEecCHHHHHHHHHhcC-cccCCCCCcCcccee-
Q 043529 35 LPPGPKPWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFG-SFPVVVGSSVEMAEAFLKTHD-ALFSYRPKLAAGKYT- 111 (307)
Q Consensus 35 lpPgP~~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg-~~~~Vvv~~~e~~~evl~~~~-~~f~~R~~~~~~~~~- 111 (307)
+||||+++|++||+.+ +++..+.+|+ +||||++++++ +.+.++|++++.++++|.++. ..+.+|+........
T Consensus 2 ~pPGp~~~P~~g~~~~---~p~~~~~~l~-~~Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~~~~~~~~r~~~~~~~~~~ 77 (404)
T 1jfb_A 2 MASGAPSFPFSRASGP---EPPAEFAKLR-ATNPVSQVKLFDGSLAWLVTKHKDVCFVATSEKLSKVRTRQGFPELSASG 77 (404)
T ss_dssp ----CCBSSCCCSSTT---SCCTHHHHHH-HHCSEEEEECTTSCEEEEECSHHHHHHHHHCTTEECCTTSTTCCCCSHHH
T ss_pred CCCCCCCCCCCCCcCC---CccHHHHHHH-HhCCeeeeecCCCCceEEEecHHHHHHHHcCCcccccccccCCccccccc
Confidence 4999999999999864 6788888885 69999999874 557788999999999998763 355566643222110
Q ss_pred ---ecCCcceEeccCChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhc--CCceechHHHHHHHHHHHHH
Q 043529 112 ---TFNYSNITWSQYGPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESS--GKPIILKDNLLDLNLEVMSR 186 (307)
Q Consensus 112 ---~~~~~~~~~~~~G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~t~~ii~~ 186 (307)
..+ ..+++..+|+.|+++||+++ +.|++++++.+.+.+.++++.+++.+.+.. ++++|+.+.+...+.++++.
T Consensus 78 ~~~~~~-~~~l~~~~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~d~~~~~~~~~~~~i~~ 155 (404)
T 1jfb_A 78 KQAAKA-KPTFVDMDPPEHMHQRSMVE-PTFTPEAVKNLQPYIQRTVDDLLEQMKQKGCANGPVDLVKEFALPVPSYIIY 155 (404)
T ss_dssp HHHTTS-CCCGGGCCTTHHHHHHTTTG-GGGSHHHHHHHHHHHHHHHHHHHHHHHHHCSTTSCEEHHHHTTTHHHHHHHH
T ss_pred cchhcc-cCcccccCchhHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHH
Confidence 111 23445567999999999984 889999999999999999999999998754 46899999999999999999
Q ss_pred HHhcCccccchhhHHHHHHHHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 043529 187 MVLGKKYTNEIVARHEFKEMADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNY 266 (307)
Q Consensus 187 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 266 (307)
.+||.+.+.. ++.+.....+. . ..| . .++..+..+.+.+++.++|+++++..
T Consensus 156 ~~~G~~~~~~-----~~~~~~~~~~~---~-----~~~--------~-~~~~~~~~~~~~~~~~~~i~~r~~~~------ 207 (404)
T 1jfb_A 156 TLLGVPFNDL-----EYLTQQNAIRT---N-----GSS--------T-AREASAANQELLDYLAILVEQRLVEP------ 207 (404)
T ss_dssp HHHTCCGGGH-----HHHHHHHHHHH---C-----TTS--------C-HHHHHHHHHHHHHHHHHHHHHHHHSC------
T ss_pred HHcCCCHHHH-----HHHHHHHHHHh---c-----cCc--------c-hHHHHHHHHHHHHHHHHHHHHHHhCC------
Confidence 9999876421 12211111110 0 011 1 12344566778888899998887521
Q ss_pred CCCCHHHHHhhhcCCCCccccCchHHHHHHHHHHhhccCCC
Q 043529 267 EAKDMMDVLLQLADDPTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 267 ~~~d~ld~ll~~~~~~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
..|+++.|++...+ +..+|++++.+++.++++|||||
T Consensus 208 -~~d~l~~ll~~~~~---~~~l~~~ei~~~~~~l~~AG~eT 244 (404)
T 1jfb_A 208 -KDDIISKLCTEQVK---PGNIDKSDAVQIAFLLLVAGNAT 244 (404)
T ss_dssp -CSSHHHHHHHHTTT---TTSSCHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHhhcc---CCCCCHHHHHHHHHHHHHHhhhh
Confidence 46999999963322 23599999999999999999985
No 26
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A {Pseudomonas SP} SCOP: a.104.1.1
Probab=99.94 E-value=2.4e-26 Score=209.86 Aligned_cols=250 Identities=14% Similarity=0.091 Sum_probs=174.3
Q ss_pred CCCCCCCCCCCCCcccccccCC-----CCchHHHHHHHHhhCCceEEec-CCcCEEEecCHHHHHHHHHhcCcccCCCCC
Q 043529 31 RELNLPPGPKPWPIIGNLNLIG-----PLPYRSIHALSEKYGPIMQLKF-GSFPVVVGSSVEMAEAFLKTHDALFSYRPK 104 (307)
Q Consensus 31 ~~~~lpPgP~~lPilGn~~~l~-----~~~~~~~~~~~~kYG~i~~~~l-g~~~~Vvv~~~e~~~evl~~~~~~f~~R~~ 104 (307)
.+.++||| ++|++.... .+++..+.++++ ||||+++++ |+.++||++|+++++++|.++ ..|++|+.
T Consensus 3 ~~~~~pp~-----~~g~l~~~~~~~~~~~p~~~~~~l~~-~gpv~~~~~~g~~~~vvv~~~~~v~~vl~~~-~~fs~r~~ 75 (428)
T 1cpt_A 3 ARATIPEH-----IARTVILPQGYADDEVIYPAFKWLRD-EQPLAMAHIEGYDPMWIATKHADVMQIGKQP-GLFSNAEG 75 (428)
T ss_dssp TTCCSCHH-----HHHHHHSSGGGGCHHHHHHHHHHHHH-HCSEEEECCTTSCCEEEECSHHHHHHHHHCT-TTEESSSS
T ss_pred cccccchh-----hhcccCChhhhcccCCccHHHHHHHH-hCCeeeccccCCCCeEEEccHHHHHHHHcCc-hhccCccc
Confidence 34578999 899865431 357888888866 899999998 788999999999999999754 57999875
Q ss_pred -cCcc---c-e-e---ec---CCcceEeccCChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceec
Q 043529 105 -LAAG---K-Y-T---TF---NYSNITWSQYGPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIIL 172 (307)
Q Consensus 105 -~~~~---~-~-~---~~---~~~~~~~~~~G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 172 (307)
.... . . + .. ....+++..+|+.|+++||+++ +.|+++.++.+.+.++++++.+++.+.+. ++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~g~~~~~~Rr~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-~~~~d~ 153 (428)
T 1cpt_A 76 SEILYDQNNEAFMRSISGGCPHVIDSLTSMDPPTHTAYRGLTL-NWFQPASIRKLEENIRRIAQASVQRLLDF-DGECDF 153 (428)
T ss_dssp CSSCCCHHHHHHHHHHTTTSSCSSCCGGGCCTTHHHHHHHHHH-TTSSHHHHGGGHHHHHHHHHHHHHHHHTS-SSEEEH
T ss_pred cccCCcccccchhccccccccccccccccCChHHHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHHHHh-CCCeeh
Confidence 3221 1 1 1 11 1123455567999999999995 88999999999999999999999999863 357899
Q ss_pred hHHH-HHHHHHHHHHHHhcCccccchhhHHHHHHHHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHH
Q 043529 173 KDNL-LDLNLEVMSRMVLGKKYTNEIVARHEFKEMADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEY 251 (307)
Q Consensus 173 ~~~~-~~~t~~ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (307)
.+.+ ..+++++|+.+ ||.+.+. ...+.+..+.++..... ....+|++++++ +.+.++..+..+++.+++.+
T Consensus 154 ~~~~~~~~~~~vi~~~-fG~~~~~----~~~~~~~~~~~~~~~~~--~~~~~P~l~~~~-~~~~~~~~~~~~~~~~~~~~ 225 (428)
T 1cpt_A 154 MTDCALYYPLHVVMTA-LGVPEDD----EPLMLKLTQDFFGVHEP--DEQAVAAPRQSA-DEAARRFHETIATFYDYFNG 225 (428)
T ss_dssp HHHTTTTHHHHHHHHH-HTCCGGG----HHHHHHHHHTTTCC-------------------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHH-cCCCHhH----HHHHHHHHHHHHhcccc--cccccccccccc-hhhHHHHHHHHHHHHHHHHH
Confidence 7554 57999999999 9987642 22344333322211111 123456554431 13334555667788888999
Q ss_pred HHHHHHhhccCCCCCCCCCHHHHHhhhcCCCCccccCchHHHHHHHHHHhhccCCC
Q 043529 252 ELDEHNARRKGVDNYEAKDMMDVLLQLADDPTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 252 ~i~~~~~~~~~~~~~~~~d~ld~ll~~~~~~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
+|+++++. ...|+++.|++...+ +..+|+++|++++.++++|||||
T Consensus 226 ~i~~r~~~-------~~~dll~~ll~~~~~---~~~ls~~ei~~~~~~l~~AG~eT 271 (428)
T 1cpt_A 226 FTVDRRSC-------PKDDVMSLLANSKLD---GNYIDDKYINAYYVAIATAGHDT 271 (428)
T ss_dssp HHHHHTTS-------CCSSHHHHHHHCBSS---SSBCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcC-------CCCcHHHHHHhcccc---CCCCCHHHHHHHHHHHHHHHHHH
Confidence 99888641 246999999984322 34699999999999999999985
No 27
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A {Amycolatopsis orientalis} SCOP: a.104.1.1
Probab=99.94 E-value=1.8e-25 Score=202.71 Aligned_cols=231 Identities=17% Similarity=0.161 Sum_probs=170.6
Q ss_pred CCCCCCCCCCCCcccccccCCCCchHHHHHHHHhhCCceEEe----c-CC-cCEEEecCHHHHHHHH-HhcCcccCCCCC
Q 043529 32 ELNLPPGPKPWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLK----F-GS-FPVVVGSSVEMAEAFL-KTHDALFSYRPK 104 (307)
Q Consensus 32 ~~~lpPgP~~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~----l-g~-~~~Vvv~~~e~~~evl-~~~~~~f~~R~~ 104 (307)
..++||||+++|+. +..+++..+.+| ++||||++++ + |+ .++|+++||++++++| .++ .|++++.
T Consensus 8 ~~~lppgp~~~p~~-----~~~~p~~~~~~l-~~yGpv~~~~~~~~~~~~~~~~vvv~~~~~i~~vl~~~~--~~~~~~~ 79 (406)
T 1ued_A 8 VAPLLREPANFQLR-----TNCDPHEDNFGL-RAHGPLVRIVGESSTQLGRDFVWQAHGYEVVRRILGDHE--HFTTRPQ 79 (406)
T ss_dssp CCCEEECCTTTTCE-----ETTEECHHHHHH-HTTCSEEEEESHHHHHTTSSCEEEECSHHHHHHHHHCCS--SEECCCC
T ss_pred CCCCcccCcccCCC-----CCCCcHHHHHHH-HHhCCeeeecccccCCCCCccEEEEcCHHHHHHHHhhCc--ccccccc
Confidence 45789999999987 445688899999 9999999999 7 78 8999999999999999 543 4777664
Q ss_pred cCccc-eeec--CCcceEeccCChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHHHH-HH
Q 043529 105 LAAGK-YTTF--NYSNITWSQYGPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNLLD-LN 180 (307)
Q Consensus 105 ~~~~~-~~~~--~~~~~~~~~~G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~t 180 (307)
..... .+.. ...+.++..+|+.|+++||+++ +.|+++.++.+.+.+.++++.+++.|.+. |+++|+.+.+.. ++
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-g~~~d~~~~~~~~~~ 157 (406)
T 1ued_A 80 FTQSKSGAHVEAQFVGQISTYDPPEHTRLRKMLT-PEFTVRRIRRMEPAIQSLIDDRLDLLEAE-GPSADLQGLFADPVG 157 (406)
T ss_dssp C---------CGGGTTCGGGCCTTHHHHHHHHHG-GGSSHHHHHHHHHHHHHHHHHHHHHHHHH-CTTEEHHHHTHHHHH
T ss_pred ccccccccccccccccccccCCCHHHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeeHHHHHHHHhH
Confidence 21110 1110 0122345568999999999995 88999999999999999999999999753 578999998875 99
Q ss_pred HHHHHHHHhcCccccchhhHHHHHHHHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043529 181 LEVMSRMVLGKKYTNEIVARHEFKEMADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARR 260 (307)
Q Consensus 181 ~~ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 260 (307)
+++++ .+||.+.+ ..+.+.+.+..++. . . . .. ++.....+++.+++.++|+++++..
T Consensus 158 ~~vi~-~~~G~~~~----~~~~~~~~~~~~~~----~----~------~---~~-~~~~~~~~~~~~~~~~~i~~r~~~~ 214 (406)
T 1ued_A 158 AHALC-ELLGIPRD----DQREFVRRIRRNAD----L----S------R---GL-KARAADSAAFNRYLDNLLARQRADP 214 (406)
T ss_dssp HHHHH-HHHTCCHH----HHHHHHHHHHHCC-----------------C---CH-HHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHH-HHcCCCHH----HHHHHHHHHHHHHh----c----c------C---CH-HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999 57998643 12234333322111 0 0 1 01 2345567778888999999887521
Q ss_pred cCCCCCCCCCHHHHHhhhcCCCCccccCchHHHHHHHHHHhhccCCC
Q 043529 261 KGVDNYEAKDMMDVLLQLADDPTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 261 ~~~~~~~~~d~ld~ll~~~~~~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
..|+++.|++.. +..+|++++.+++.++++|||||
T Consensus 215 -------~~d~l~~ll~~~-----~~~ls~~ei~~~~~~l~~AG~dT 249 (406)
T 1ued_A 215 -------DDGLLGMIVRDH-----GDNVTDEELKGLCTALILGGVET 249 (406)
T ss_dssp -------CSSHHHHHHHHH-----GGGSCHHHHHHHHHHHHHHHHHH
T ss_pred -------CCCHHHHHHHhc-----CCCCCHHHHHHHHHHHHHHhhHH
Confidence 469999999843 23589999999999999999985
No 28
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.50A {Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A* 3cv9_A*
Probab=99.93 E-value=3e-24 Score=195.11 Aligned_cols=235 Identities=14% Similarity=0.125 Sum_probs=171.4
Q ss_pred CCCCCCCCCCcccccccCCCCchHHHHHHHHhh-CCceEEec-CCcCEEEecCHHHHHHHHHhcCcccCCCCCcCcccee
Q 043529 34 NLPPGPKPWPIIGNLNLIGPLPYRSIHALSEKY-GPIMQLKF-GSFPVVVGSSVEMAEAFLKTHDALFSYRPKLAAGKYT 111 (307)
Q Consensus 34 ~lpPgP~~lPilGn~~~l~~~~~~~~~~~~~kY-G~i~~~~l-g~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~~~~~~ 111 (307)
..||||+++|.+..-..+..+++..+.+| ++| |||+++++ |+.++|+++|+++++++|.++ .|++++........
T Consensus 5 ~~~~~~~~~P~~~~~~~~~~~p~~~~~~l-~~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~~~~~~~~~~~~~~ 81 (412)
T 2zbx_A 5 ATTPQTTDAPAFPSNRSCPYQLPDGYAQL-RDTPGPLHRVTLYDGRQAWVVTKHEAARKLLGDP--RLSSNRTDDNFPAT 81 (412)
T ss_dssp ---CCCCSSCBSSCCCSSTTSCCHHHHHH-HHSSSSEEEEECTTSCEEEEECSHHHHHHHHTCT--TEECCTTSTTSCCC
T ss_pred CCCCCCCCCCCCCCCchhccChHHHHHHH-HhcCCCeEeeccCCCCcEEEEecHHHHHHHHcCc--ccccCccccccccc
Confidence 45899999997633233556789999999 788 99999998 889999999999999999865 36666531111111
Q ss_pred e-----c-CCcceEeccCChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHHHH-HHHHHH
Q 043529 112 T-----F-NYSNITWSQYGPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNLLD-LNLEVM 184 (307)
Q Consensus 112 ~-----~-~~~~~~~~~~G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~t~~ii 184 (307)
. . ...+.++..+|+.|+++||+++ +.|++++++.+.+.+.++++.+++.|.+. |+++|+.+.+.. ++++++
T Consensus 82 ~~~~~~~~~~~~~l~~~~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-g~~~d~~~~~~~~~~~~vi 159 (412)
T 2zbx_A 82 SPRFEAVRESPQAFIGLDPPEHGTRRRMTI-SEFTVKRIKGMRPEVEEVVHGFLDEMLAA-GPTADLVSQFALPVPSMVI 159 (412)
T ss_dssp SGGGC----CCCCGGGCCTTHHHHHHTTTG-GGGSHHHHHHHHHHHHHHHHHHHHHHHHH-CSCEEHHHHTTTHHHHHHH
T ss_pred ccccccccccccccccCCcHHHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCccHHHHHHHHHHHHHH
Confidence 0 0 0122345568999999999995 78999999999999999999999999853 568999988864 889999
Q ss_pred HHHHhcCccccchhhHHHHHHHHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 043529 185 SRMVLGKKYTNEIVARHEFKEMADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVD 264 (307)
Q Consensus 185 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 264 (307)
+. +||.+.+. .+.+.+.+..++.. .+ + ++.....+.+.+++.++|+++++..
T Consensus 160 ~~-~~G~~~~~----~~~~~~~~~~~~~~---------~~--------~--~~~~~~~~~~~~~~~~~i~~r~~~~---- 211 (412)
T 2zbx_A 160 CR-LLGVPYAD----HEFFQDASKRLVQS---------TD--------A--QSALTARNDLAGYLDGLITQFQTEP---- 211 (412)
T ss_dssp HH-HHTCCGGG----HHHHHHHHHHHHHC---------SS--------H--HHHHHHHHHHHHHHHHHHHHHHHSC----
T ss_pred HH-HcCCCHHH----HHHHHHHHHHHhcc---------Cc--------H--HHHHHHHHHHHHHHHHHHHHHHhCC----
Confidence 96 79987642 23444444433321 00 1 2344566778888899999887531
Q ss_pred CCCCCCHHHHHhhhcCCCCccccCchHHHHHHHHHHhhccCCC
Q 043529 265 NYEAKDMMDVLLQLADDPTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 265 ~~~~~d~ld~ll~~~~~~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
..|+++.|++...+ +..+|++++.+++.++++|||||
T Consensus 212 ---~~d~l~~ll~~~~~---~~~ls~~ei~~~~~~~~~AG~dT 248 (412)
T 2zbx_A 212 ---GAGLVGALVADQLA---NGEIDREELISTAMLLLIAGHET 248 (412)
T ss_dssp ---CSSHHHHHHHTTTT---TTSSCHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCHHHHHHHhccc---CCCCCHHHHHHHHHHHHHHHHHH
Confidence 36999999984322 34699999999999999999985
No 29
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron, metal-binding, oxidoreductase, substrate-soaking, cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB: 1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A* 2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A* 1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Probab=99.92 E-value=2.7e-24 Score=195.56 Aligned_cols=236 Identities=11% Similarity=0.061 Sum_probs=171.5
Q ss_pred hcCCCCCCCCCCCCCcc--cccccC-----CCCchHHHHHHHHhhC--CceEEe-cCCcCEEEecCHHHHHHHHHhcCcc
Q 043529 29 RRRELNLPPGPKPWPII--GNLNLI-----GPLPYRSIHALSEKYG--PIMQLK-FGSFPVVVGSSVEMAEAFLKTHDAL 98 (307)
Q Consensus 29 ~~~~~~lpPgP~~lPil--Gn~~~l-----~~~~~~~~~~~~~kYG--~i~~~~-lg~~~~Vvv~~~e~~~evl~~~~~~ 98 (307)
..++.++||||++.|.. +.+..+ ..+++..+.+|. +|| ||++++ +| ++|+++|+++++++|. +.+.
T Consensus 6 ~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~p~~~~~~l~-~~G~~pv~~~~~~g--~~vvv~~~~~v~~vl~-~~~~ 81 (415)
T 2zwu_A 6 IQSNANLAPLPPHVPEHLVFDFDMYNPSNLSAGVQEAWAVLQ-ESNVPDLVWTRCNG--GHWIATRGQLIREAYE-DYRH 81 (415)
T ss_dssp -----CCCCCCTTSCGGGBCCCCTTSCTTGGGCHHHHHHGGG-STTSCSEEEECGGG--CEEEECSHHHHHHHHH-CTTT
T ss_pred ccCccccCCCCCCCCcccccccCcCChhhcccChHHHHHHHH-hcCCCCeEEecCCC--CeEEEcCHHHHHHHHc-Cccc
Confidence 34567899999999975 654222 236788899984 899 999999 67 7999999999999997 4457
Q ss_pred cCCCC-CcCccceeecCCcceEeccCChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHH-
Q 043529 99 FSYRP-KLAAGKYTTFNYSNITWSQYGPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNL- 176 (307)
Q Consensus 99 f~~R~-~~~~~~~~~~~~~~~~~~~~G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~- 176 (307)
|++|+ ....... .. ..+.++..+|+.|+++||+++ +.|+++.++.+.+.+.++++.+++.|.+. +++|+.+.+
T Consensus 82 f~~~~~~~~~~~~-~~-~~~~l~~~~g~~~~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~~--~~~d~~~~~~ 156 (415)
T 2zwu_A 82 FSSECPFIPREAG-EA-YDFIPTSMDPPEQRQFRALAN-QVVGMPVVDKLENRIQELACSLIESLRPQ--GQCNFTEDYA 156 (415)
T ss_dssp EETTSCSSSHHHH-HH-CCCTTTTCCTTTTHHHHHHHH-HHHSHHHHHHHHHHHHHHHHHHHHHHGGG--TEEEHHHHTT
T ss_pred cCCCcccCCCCcc-cc-ccccCccCCCcHHHHHHHHHH-hhhCHHHHHHHHHHHHHHHHHHHHHHHhc--CCccHHHHHH
Confidence 99887 2211111 11 122044557999999999995 78999999999999999999999999863 479998765
Q ss_pred HHHHHHHHHHHHhcCccccchhhHHHHHHHHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHH
Q 043529 177 LDLNLEVMSRMVLGKKYTNEIVARHEFKEMADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEH 256 (307)
Q Consensus 177 ~~~t~~ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 256 (307)
..+++++++.+ ||.+.+. ..++.+....++.. ..|. +.....+++.+++.++|+++
T Consensus 157 ~~~~~~vi~~~-~G~~~~~----~~~~~~~~~~~~~~--------~~P~-----------~~~~~~~~~~~~~~~~i~~r 212 (415)
T 2zwu_A 157 EPFPIRIFMLL-AGLPEED----IPHLKYLTDQMTRP--------DGSM-----------TFAEAKEALYDYLIPIIEQR 212 (415)
T ss_dssp THHHHHHHHHH-HTCCGGG----HHHHHHHHHHHHSC--------CSSS-----------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHH----HHHHHHHHHHHHhc--------cCHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 78999999998 9998753 23444444443321 0122 12345667778888899988
Q ss_pred HhhccCCCCCCCCCHHHHHhhhcCCCCccccCchHHHHHHHHHHhhccCCC
Q 043529 257 NARRKGVDNYEAKDMMDVLLQLADDPTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 257 ~~~~~~~~~~~~~d~ld~ll~~~~~~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
++. ...|+++.|++...+ +..+|++++.+++.++++|||||
T Consensus 213 ~~~-------~~~dll~~ll~~~~~---~~~l~~~~i~~~~~~l~~AG~dT 253 (415)
T 2zwu_A 213 RQK-------PGTDAISIVANGQVN---GRPITSDEAKRMCGLLLVGGLDT 253 (415)
T ss_dssp HHS-------CCSSHHHHHHTCEET---TEECCHHHHHHHHHHHHHHHHHT
T ss_pred HhC-------CCCCHHHHHHHhhhc---CCCCCHHHHHHHHHHHHHHhHhH
Confidence 762 146999999984222 34699999999999999999986
No 30
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Probab=99.92 E-value=1e-25 Score=203.29 Aligned_cols=223 Identities=19% Similarity=0.151 Sum_probs=158.7
Q ss_pred CCCCCCCcccccccCCCCchHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCC-CcCccceeecCC
Q 043529 37 PGPKPWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRP-KLAAGKYTTFNY 115 (307)
Q Consensus 37 PgP~~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~-~~~~~~~~~~~~ 115 (307)
+++..+|++||++++..+++..+.+|+++||||++ ++|+.++|+++||+++++++.++ .|++++ .......+. +
T Consensus 2 ~~~~~~p~iGnl~~~~~~p~~~~~~l~~~yGpv~~-~~g~~~~vvv~~~~~i~~il~~~--~f~~~~~~~~~~~~~~-g- 76 (389)
T 1n97_A 2 KRLSLREAWPYLKDLQQDPLAVLLAWGRAHPRLFL-PLPRFPLALIFDPEGVEGALLAE--GTTKATFQYRALSRLT-G- 76 (389)
T ss_dssp EECCHHHHHHHHHHHHHCHHHHHHHHHHHCSEEEE-CCTTCCEEEECSHHHHHHHHHCT--TEECCSHHHHHHHHHH-C-
T ss_pred cccccccccccHHHHhhChHHHHHHHHHHcCCeeE-ecCCccEEEECCHHHHHHHHhcC--CCCCChhHHHHHHHHh-C-
Confidence 45667899999988755688899999999999999 99999999999999999999876 788876 211111121 1
Q ss_pred cceEeccCChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHHHHHHHHHHHHHHhcCcccc
Q 043529 116 SNITWSQYGPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNLLDLNLEVMSRMVLGKKYTN 195 (307)
Q Consensus 116 ~~~~~~~~G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~t~~ii~~~~fG~~~~~ 195 (307)
.+++..+|+.|+++||+++ +.|+++.++.+.+.+.++++.+++.+. ++++|+.+.+..+++++++.++||.+++
T Consensus 77 -~~l~~~~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~---~~~~dl~~~~~~~~~~vi~~~~fG~~~~- 150 (389)
T 1n97_A 77 -RGLLTDWGESWKEARKALK-DPFLPKNVRGYREAMEEEARAFFGEWR---GEERDLDHEMLALSLRLLGRALFGKPLS- 150 (389)
T ss_dssp -SSTTTCCHHHHHHHHHHHC-GGGSHHHHHTTHHHHHHHHHHHHHTCC---SCCEEHHHHHHHHHHHHHHHHHHSSCCC-
T ss_pred -CccccCCcHHHHHHHHHhC-cccCHHHHHHHHHHHHHHHHHHHHHcc---CCcCcHHHHHHHHHHHHHHHHHcCCcch-
Confidence 2344567999999999995 889999999999999999999998886 5789999999999999999999999886
Q ss_pred chhhHHHHHHHHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHH
Q 043529 196 EIVARHEFKEMADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKDMMDVL 275 (307)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~ld~l 275 (307)
+ ++.+.+..+...... . .++++.++|... .++..+..+++.+++.++|++ + |
T Consensus 151 -~----~~~~~~~~~~~~~~~-~---~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~i~~------------r------l 202 (389)
T 1n97_A 151 -P----SLAEHALKALDRIMA-Q---TRSPLALLDLAA-EARFRKDRGALYREAEALIVH------------P------P 202 (389)
T ss_dssp -H----HHHHHHHHHHHHHHH-H---HHCGGGGGCHHH-HHHHHHHHHHHHHHHGGGTTS------------T------T
T ss_pred -H----HHHHHHHHHHHHHHH-H---HhhHHHhcCCch-hHHHHHHHHHHHHHHHHHHHH------------H------h
Confidence 1 333333333332210 0 111223333211 122233333333333221111 1 2
Q ss_pred hhhcCCCCccccCchHHHHHHHHHHhhccCCC
Q 043529 276 LQLADDPTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 276 l~~~~~~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
+ ..+|++++.+++.++++|||||
T Consensus 203 l---------~~l~~~~l~~~~~~~~~aG~~T 225 (389)
T 1n97_A 203 L---------SHLPRERALSEAVTLLVAGHET 225 (389)
T ss_dssp G---------GGSCHHHHHHHHHHHHHHHSHH
T ss_pred c---------ccCCHHHHHHHHHHHHHcCchh
Confidence 2 1389999999999999999985
No 31
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase, structural genomics, structural genomics consortium, SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo sapiens} PDB: 3sn5_A*
Probab=99.92 E-value=1.8e-25 Score=207.14 Aligned_cols=255 Identities=13% Similarity=0.054 Sum_probs=164.0
Q ss_pred CCCCCCCCCCC-CCcccccccCCCCchHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcC-cccCCCCCcCcc
Q 043529 31 RELNLPPGPKP-WPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHD-ALFSYRPKLAAG 108 (307)
Q Consensus 31 ~~~~lpPgP~~-lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~-~~f~~R~~~~~~ 108 (307)
+..+.||||++ +|++||++++..+++..+.+|+++||+||++++|+.++|||+||+.+++++.++. ..|..++.. ..
T Consensus 10 ~~~~~pPgp~~~~P~iG~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~~~~vvv~dp~~~~~il~~~~~~~~~~~~~~-~~ 88 (491)
T 3dax_A 10 RQTGEPPLENGLIPYLGCALQFGANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKYFDWKKFHFA-TS 88 (491)
T ss_dssp CCTTCCCEEEEEESCTTTTGGGTCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGTHHHHSCCTTEESSHHHHH-HH
T ss_pred cCCCCCCcCCCcccchhhHHHHhhCHHHHHHHHHHhcCCeEEEEECCeEEEEEcChHHHHHHHcCCccCChHHHHHH-HH
Confidence 33467999998 8999999888667899999999999999999999999999999999999997654 233322211 11
Q ss_pred ceeecCCcceEeccCChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhh---c--CCceechHHHHHHHHHH
Q 043529 109 KYTTFNYSNITWSQYGPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYES---S--GKPIILKDNLLDLNLEV 183 (307)
Q Consensus 109 ~~~~~~~~~~~~~~~G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~---~--~~~~~~~~~~~~~t~~i 183 (307)
.... + .+.....+|+.|+++|+.+. +.|+.+.++.+.+.+.+++..+++..... . ...+++...+.++++++
T Consensus 89 ~~~~-g-~~~~~~~~g~~w~~~r~~~~-~~f~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ 165 (491)
T 3dax_A 89 AKAF-G-HRSIDPMDGNTTENINDTFI-KTLQGHALNSLTESMMENLQRIMRPPVSSNSKTAAWVTEGMYSFCYRVMFEA 165 (491)
T ss_dssp HHHH-T-CCCCCGGGTSBCCCHHHHHH-HHHSHHHHHHHHHHHHHHHHHHHC----------CCEEEEHHHHHHHHHHHH
T ss_pred HHHc-C-CCcccccchhHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHHHHHhhccCCcCCCCceeccHHHHHHHHHHHH
Confidence 1111 1 12221456899999999885 67888888888887777777776554321 1 13577888899999999
Q ss_pred HHHHHhcCccccchhhHHHHHHHHHHHHHhccCCcccccccccc-ccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 043529 184 MSRMVLGKKYTNEIVARHEFKEMADELFILGGVLDIGDMIPWLG-FLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKG 262 (307)
Q Consensus 184 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 262 (307)
++..+||.+....+.....+.+..+.+.. +.+.+|++. .+|... .++..+..+.+.+. +++++.+..
T Consensus 166 ~~~~~fG~~~~~~~~~~~~~~~~~~~~~~------~~~~~p~l~~~lp~~~-~~~~~~~~~~~~~~---~~~~~~~~~-- 233 (491)
T 3dax_A 166 GYLTIFGRDLTRRDTQKAHILNNLDNFKQ------FDKVFPALVAGLPIHM-FRTAHNAREKLAES---LRHENLQKR-- 233 (491)
T ss_dssp HHHHHHCBCSTTGGGHHHHHHHHHHHHHH------HHHHHHHHHTTCCGGG-SHHHHHHHHHHHHH---TSHHHHTTC--
T ss_pred hHHHHcCcccccccchhhhhhHHHHHHHH------HHHHhHHHHHhCCHhh-hhHHHHHHHHHHHH---HHHHHhhcc--
Confidence 99999998876432111122222222111 123556442 233211 12233333333222 223333221
Q ss_pred CCCCCCCCHHHHHhhhcCCCCccccCchHHHHHHHHHHhhccCCC
Q 043529 263 VDNYEAKDMMDVLLQLADDPTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 263 ~~~~~~~d~ld~ll~~~~~~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
....|+++.+++..++ ...++++++.+++.++++|||||
T Consensus 234 ---~~~~d~l~~ll~~~~~---~~~~~~~~i~~~~~~~~~ag~~t 272 (491)
T 3dax_A 234 ---ESISELISLRMFLNDT---LSTFDDLEKAKTHLVVLWASQAN 272 (491)
T ss_dssp ---BSCCHHHHHHHHHHHH---HBCCCHHHHHHHHHHHHHHHHTT
T ss_pred ---cchhHHHHHHHHHHHh---cCCChHHHHHHHHHHHHHHhccc
Confidence 1357999999874322 12488999999999999999986
No 32
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding, oxidoreductase-antibiotic complex; HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB: 3e5j_A* 3e5k_A* 3e5l_A*
Probab=99.91 E-value=4.9e-23 Score=186.56 Aligned_cols=219 Identities=18% Similarity=0.207 Sum_probs=161.6
Q ss_pred CCCCchHHHHHHHHhhCCceEEec-CCcCEEEecCHHHHHHHHHhcCcccCCCCC--c-Cccceeec-CCcceEeccCCh
Q 043529 51 IGPLPYRSIHALSEKYGPIMQLKF-GSFPVVVGSSVEMAEAFLKTHDALFSYRPK--L-AAGKYTTF-NYSNITWSQYGP 125 (307)
Q Consensus 51 l~~~~~~~~~~~~~kYG~i~~~~l-g~~~~Vvv~~~e~~~evl~~~~~~f~~R~~--~-~~~~~~~~-~~~~~~~~~~G~ 125 (307)
+..+++..+.+| ++||||+++++ |+.++|+++|+++++++|.++ .|++|+. . .....+.. ..+.+++..+|+
T Consensus 17 ~~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~ 93 (403)
T 3aba_A 17 CPFLPPDGIADI-RAAAPVTRATFTSGHEAWLVTGYEEVRALLRDS--SFSVQVPHALHTQDGVVTQKPGRGSLLWQDEP 93 (403)
T ss_dssp STTSCCTTHHHH-HHHCSEEEEECTTSCEEEEECCHHHHHHHHHCT--TEESCCSCCTTSSSCCCCCCCCTTCCTTCCTT
T ss_pred cccChhHHHHHH-HhcCCeeeeccCCCceEEEEcCHHHHHHHHcCC--CcccccccccccccccccccccccccccCCch
Confidence 445678889999 89999999997 889999999999999999864 5888752 1 11111111 012334566899
Q ss_pred hHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHHH-HHHHHHHHHHHhcCccccchhhHHHHH
Q 043529 126 YWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNLL-DLNLEVMSRMVLGKKYTNEIVARHEFK 204 (307)
Q Consensus 126 ~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~t~~ii~~~~fG~~~~~~~~~~~~~~ 204 (307)
.|+++||+++ +.|+++.++.+.+.+.++++.+++.|.+ .++++|+.+.+. .+++++++. +||.+.+. .+.+.
T Consensus 94 ~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~-~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~----~~~~~ 166 (403)
T 3aba_A 94 EHTSDRKLLA-KEFTVRRMQALRPNIQRIVDEHLDAIEA-RGGPVDLVKTFANAVPSMVISD-LFGVPVER----RAEFQ 166 (403)
T ss_dssp HHHHHHHHHH-HHSCHHHHHTTHHHHHHHHHHHHHHHHH-HCSCEEHHHHTTTHHHHHHHHH-HHTCCGGG----HHHHH
T ss_pred hHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHHHHHHHHh-cCCCccHHHHHHHHHHHHHHHH-HcCCCHHH----HHHHH
Confidence 9999999995 7899999999999999999999999984 257899987664 699999997 79987642 22344
Q ss_pred HHHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHhhhcCCCCc
Q 043529 205 EMADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKDMMDVLLQLADDPTL 284 (307)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~ld~ll~~~~~~~~ 284 (307)
+..+.++.. . .| | ++..+..+++..++.++|+++++.. ..|+++.|++.. ++
T Consensus 167 ~~~~~~~~~------~--~~-----p-----~~~~~~~~~~~~~~~~~i~~r~~~~-------~~dll~~ll~~~-~~-- 218 (403)
T 3aba_A 167 DIAEAMMRV------D--QD-----A-----AATEAAGMRLGGLLYQLVQERRANP-------GDDLISALITTE-DP-- 218 (403)
T ss_dssp HHHHHHSBS------S--SC-----H-----HHHHHHHHHHHHHHHHHHHHHHHSC-------CSSHHHHHHTSC-CT--
T ss_pred HHHHHHHhc------c--Cc-----H-----HHHHHHHHHHHHHHHHHHHHHHhCC-------CCCHHHHHHhhc-cC--
Confidence 333322210 0 01 1 2344566778888999999887631 369999999843 21
Q ss_pred cccCchHHHHHHHHHHhhccCCC
Q 043529 285 EVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 285 ~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
+..+|++++.+++.++++|||||
T Consensus 219 ~~~l~~~ei~~~~~~l~~AG~dT 241 (403)
T 3aba_A 219 DGVVDDMFLMNAAGTLLIAAHDT 241 (403)
T ss_dssp TCCCSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Confidence 34699999999999999999985
No 33
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase, oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas paucimobilis} PDB: 3awq_A* 3awp_A*
Probab=99.91 E-value=3e-23 Score=188.56 Aligned_cols=239 Identities=13% Similarity=0.056 Sum_probs=167.6
Q ss_pred CCCCCCCCcccccccCCCCchHHHHHHHHhh-CCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCcC--ccceee
Q 043529 36 PPGPKPWPIIGNLNLIGPLPYRSIHALSEKY-GPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKLA--AGKYTT 112 (307)
Q Consensus 36 pPgP~~lPilGn~~~l~~~~~~~~~~~~~kY-G~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~--~~~~~~ 112 (307)
|||| |++||++.+..+++..+.++.++| |||+++++++.+++++++|++++ ++.+. ..|+.++... ....+.
T Consensus 4 pPg~---P~iG~~~~~~~~p~~~~~~l~~~y~gpv~~~~~~g~~~~vv~~~~~~~-~l~~~-~~f~~~~~~~~~~~~~~~ 78 (415)
T 3awm_A 4 TPHT---KGPDETLSLLADPYRFISRQCQRLGANAFESRFLLKKTNCLKGAKAAE-IFYDT-TRFEREGAMPVAIQKTLL 78 (415)
T ss_dssp --------CCCCHHHHHHSTTTHHHHHHHHHTSSEEEEEETTEEEEEEESHHHHH-HHTCT-TTEECTTCSCHHHHTTTS
T ss_pred CCCC---CccchHHHHHhChHHHHHHHHHHhCCCeEEEecCCCcEEEEeCHHHHH-HHhcc-cccccccccchhhhhhcc
Confidence 6776 899999877556888999999999 79999998888999999999997 66543 4677654321 111111
Q ss_pred cCCcceEeccCChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHHHHHHHHHHHHHHhcCc
Q 043529 113 FNYSNITWSQYGPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNLLDLNLEVMSRMVLGKK 192 (307)
Q Consensus 113 ~~~~~~~~~~~G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~t~~ii~~~~fG~~ 192 (307)
+ .+.++..+|+.|+++||+++ +.|+++.++.+.+.+.+.++.+++.|.+ ++++|+.+.+..+++++++.+ ||.+
T Consensus 79 -g-~~~l~~~dg~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~~~~--~~~vdl~~~~~~~~~~vi~~~-~G~~ 152 (415)
T 3awm_A 79 -G-QGGVQGLDGETHRHRKQMFM-GLMTPERVRALAQLFEAEWRRAVPGWTR--KGEIVFYDELHEPLTRAVCAW-AGVP 152 (415)
T ss_dssp -C-SSSGGGCCHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHHHHHHHH--HSEEEHHHHHHHHHHHHHHHH-HTCC
T ss_pred -C-CcceeecCcHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHhhcc--CCcEeHHHHHHHHHHHHHHHH-cCCC
Confidence 1 23345668999999999984 8899999999999999999999999976 468999999999999999998 8988
Q ss_pred cccchhhHHHHHHHHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHH
Q 043529 193 YTNEIVARHEFKEMADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKDMM 272 (307)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~l 272 (307)
.+.. +..++.+.+..++.... ...| . ..+.....+++.+++..+|+++++... .....|++
T Consensus 153 ~~~~--~~~~~~~~~~~~~~~~~-----~~~~--------~-~~~~~~~~~~~~~~~~~~i~~r~~~~~---~~~~~d~l 213 (415)
T 3awm_A 153 LPDD--EAGNRAGELRALFDAAG-----SASP--------R-HLWSRLARRRVDAWAKRIIEGIRAGSI---GSGSGTAA 213 (415)
T ss_dssp CCGG--GHHHHHHHHHHHHHSTT-----CSSH--------H-HHHHHHHHHHHHHHHHHHHHHHHHTSS---CCCTTSHH
T ss_pred CCcc--hHHHHHHHHHHHHHHhc-----ccCc--------h-HHHHHHHHHHHHHHHHHHHHHHHHhhh---cCCCCCHH
Confidence 7542 12222222222222110 0011 1 123455677888899999999887532 12356999
Q ss_pred HHHhhhcCCCCccccCchHHHHHHHHHHhhccCCC
Q 043529 273 DVLLQLADDPTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 273 d~ll~~~~~~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
+.|++...++ +..++++++..++..++ |||||
T Consensus 214 ~~ll~~~~~~--g~~~~~~~~~~~~~~~~-ag~~t 245 (415)
T 3awm_A 214 YAIAWHRDRH--DDLLSPHVAAVELVNVL-RPTVA 245 (415)
T ss_dssp HHHHHCBCTT--SCBCCHHHHHHHHHHHH-HHHHT
T ss_pred HHHHhhhhcc--CCCCCHHHHHHHHHHHH-Hhhhh
Confidence 9999843221 34688988888777665 88875
No 34
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid complex, riken structural genomics/proteomics initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Probab=99.91 E-value=4e-23 Score=187.86 Aligned_cols=237 Identities=12% Similarity=0.057 Sum_probs=168.8
Q ss_pred CCCcccccccCCCCchHHHHHHHHhhC-CceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCcC--ccceeecCCcc
Q 043529 41 PWPIIGNLNLIGPLPYRSIHALSEKYG-PIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKLA--AGKYTTFNYSN 117 (307)
Q Consensus 41 ~lPilGn~~~l~~~~~~~~~~~~~kYG-~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~--~~~~~~~~~~~ 117 (307)
+.|++||+..+..+++..+.++.++|| ||+++++++.++|++++|++++.++. ...|+.++... ....+. + .+
T Consensus 7 g~P~lG~~~~~~~~p~~~~~~l~~~yg~pv~~~~~~g~~~v~v~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~-g-~~ 82 (417)
T 1izo_A 7 HDKSLDNSLTLLKEGYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAAKVFYD--TDRFQRQNALPKRVQKSLF-G-VN 82 (417)
T ss_dssp BCCCTTHHHHHHHHGGGHHHHHHHHTTSSEEEEEETTEEEEEECSHHHHHHHTC--TTTEECTTCSCHHHHTTTT-C-TT
T ss_pred CCCccchHHHHhhCcHHHHHHHHHHhCCCeEEeecCCccEEEECCHHHHHHHhc--ccccccccccccchhhhhc-c-cc
Confidence 348999998775568889999999998 99999998889999999999985543 34576554321 111111 1 23
Q ss_pred eEeccCChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHHHHHHHHHHHHHHhcCccccch
Q 043529 118 ITWSQYGPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNLLDLNLEVMSRMVLGKKYTNEI 197 (307)
Q Consensus 118 ~~~~~~G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~t~~ii~~~~fG~~~~~~~ 197 (307)
.++..+|+.|+++|++++ +.|+++.++.+.+.+.+.+..+++.|.+ ++++|+.+.+..+++++++.+ ||.+.+..
T Consensus 83 ~l~~~dg~~h~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~--~~~~dl~~~~~~~~~~vi~~~-~G~~~~~~- 157 (417)
T 1izo_A 83 AIQGMDGSAHIHRKMLFL-SLMTPPHQKRLAELMTEEWKAAVTRWEK--ADEVVLFEEAKEILCRVACYW-AGVPLKET- 157 (417)
T ss_dssp CGGGCCHHHHHHHHHHHH-HTSSHHHHHHHHHHHHHHHHHHHHHHTT--SSEEEHHHHHHHHHHHHHHHH-HTCCCCTT-
T ss_pred ceeecCChHHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHhc--CCCeeHHHHHHHHHHHHHHHH-cCCCCCch-
Confidence 455668999999999985 8899999999999999999999999875 578999999999999999998 69887542
Q ss_pred hhHHHHHHHHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHhh
Q 043529 198 VARHEFKEMADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKDMMDVLLQ 277 (307)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~ld~ll~ 277 (307)
+..++.+.+..++..... ..| .+ .+..+..+++.+++.++|+++++... .....|+++.|++
T Consensus 158 -~~~~~~~~~~~~~~~~~~-----~~~--------~~-~~~~~~~~~~~~~~~~~i~~r~~~~~---~~~~~d~l~~ll~ 219 (417)
T 1izo_A 158 -EVKERADDFIDMVDAFGA-----VGP--------RH-WKGRRARPRAEEWIEVMIEDARAGLL---KTTSGTALHEMAF 219 (417)
T ss_dssp -THHHHHHHHHHHHHHTTC-----CSH--------HH-HHHHHHHHHHHHHHHHHHHHHHTTSS---CCCTTSHHHHHHH
T ss_pred -HHHHHHHHHHHHHhhccc-----CCc--------cc-hhHHHHHHHHHHHHHHHHHHHHhhcc---CCCcCCHHHHHHH
Confidence 122333323233322110 111 11 23445677888899999999886432 1235799999998
Q ss_pred hcCCCCccccCchHHHHHHHHHHhhccCCC
Q 043529 278 LADDPTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 278 ~~~~~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
...+ + +..++++++..++..++ ||++|
T Consensus 220 ~~~~-~-g~~l~~~~~~~~~~~~~-ag~~t 246 (417)
T 1izo_A 220 HTQE-D-GSQLDSRMAAIELINVL-RPIVA 246 (417)
T ss_dssp CBCT-T-SCBCCHHHHHHHHHHHH-HHHHT
T ss_pred hccc-c-CCCCCHHHHHHHHHHHH-hhhhH
Confidence 4322 1 34588888887777665 88875
No 35
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome P450, endoplasmic reticulum, fatty acid biosynthesis, heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo sapiens} PDB: 2iag_A*
Probab=99.91 E-value=2.6e-24 Score=199.92 Aligned_cols=257 Identities=12% Similarity=0.009 Sum_probs=159.5
Q ss_pred cCCCCCCCCCCC-CCcccccccCCCCchHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCcC-c
Q 043529 30 RRELNLPPGPKP-WPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKLA-A 107 (307)
Q Consensus 30 ~~~~~lpPgP~~-lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~-~ 107 (307)
++..++||||++ +|++||++++..+++..+.+|+++|||||++++|+.++||++||++++++|.++...|+.++... .
T Consensus 14 ~~~~~~PPgp~~~~P~iG~~~~~~~~~~~~~~~l~~kYG~i~~v~lg~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~~~ 93 (498)
T 3b6h_A 14 TRRPGEPPLDLGSIPWLGYALDFGKDAASFLTRMKEKHGDIFTILVGGRYVTVLLDPHSYDAVVWEPRTRLDFHAYAIFL 93 (498)
T ss_dssp CCCTTCCCEECCSSTTTBTHHHHHHCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHTCCTTTEECCHHHHHH
T ss_pred ccCCCCCCCCCCCCcchhhHHHhccCHHHHHHHHHHHcCCeEEEEECCeeEEEEcCHHHHHHHHhCccccCCchhhHHHH
Confidence 344578999998 89999998875568999999999999999999999999999999999999976654355444211 1
Q ss_pred cceeecCCcceEeccCChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhh-c--CCceechHHHHHHHHHHH
Q 043529 108 GKYTTFNYSNITWSQYGPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYES-S--GKPIILKDNLLDLNLEVM 184 (307)
Q Consensus 108 ~~~~~~~~~~~~~~~~G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~-~--~~~~~~~~~~~~~t~~ii 184 (307)
..... + ...+..+|+.|| |++. +.|+.+.++.+.+.+.+++...++..... . ...+++...+.+++++++
T Consensus 94 ~~~~~-g--~~~~~~~~~~~r---r~~~-~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vi~~~~ 166 (498)
T 3b6h_A 94 MERIF-D--VQLPHYSPSDEK---ARMK-LTLLHRELQALTEAMYTNLHAVLLGDATEAGSGWHEMGLLDFSYSFLLRAG 166 (498)
T ss_dssp HHHTS-C--CCCTTCCHHHHH---HHHH-TTSSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCEEEEHHHHHHHHHHHHH
T ss_pred HHHHc-C--CCccccCHHHHH---HHHH-HhhchHhHHHHHHHHHHHHHHHHhhcccccCCCcceecHHHHHHHHHHHHH
Confidence 11111 1 222344677774 4443 57888888888777777776666654322 1 124678888889999999
Q ss_pred HHHHhcCccccchhhH-HHHHHHHHHHHHhccCCccccccccccc-cccccHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 043529 185 SRMVLGKKYTNEIVAR-HEFKEMADELFILGGVLDIGDMIPWLGF-LDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKG 262 (307)
Q Consensus 185 ~~~~fG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~P~l~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 262 (307)
+..+||.+++..+... ....+.+..++.... .+.+.+|++.+ +......++..+..+.+ .+.+++++.+..
T Consensus 167 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-- 239 (498)
T 3b6h_A 167 YLTLYGIEALPRTHESQAQDRVHSADVFHTFR--QLDRLLPKLARGSLSVGDKDHMCSVKSRL---WKLLSPARLARR-- 239 (498)
T ss_dssp HHHHHCBSCSSCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHTCCCHHHHHHHHHHHHHH---HHHTCHHHHTTC--
T ss_pred HHhhcCcccccccccchhhHHHhhHHHHHHHH--HHHhhHHHHHHHhcCchhhHHHHHHHHHH---HHHHHHHHHhcc--
Confidence 9999999875432111 112222222222211 12345664422 10011112222222222 222333333221
Q ss_pred CCCCCCCCHHHHHhhhcCCCCccccCchHHHHHHHHHHhhccCCC
Q 043529 263 VDNYEAKDMMDVLLQLADDPTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 263 ~~~~~~~d~ld~ll~~~~~~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
....|+++.+++...+ +..++++++. .+.++++|||||
T Consensus 240 ---~~~~d~l~~ll~~~~~---~~~~~~~~~~-~~~~~l~ag~~t 277 (498)
T 3b6h_A 240 ---AHRSKWLESYLLHLEE---MGVSEEMQAR-ALVLQLWATQGN 277 (498)
T ss_dssp ---BSCCHHHHHHHHHHHH---TTCCHHHHHH-HHHHHHHHHHTT
T ss_pred ---ccHHHHHHHHHHHHHh---CCCCHHHHHH-HHHHHHHHhhhc
Confidence 2357999999974322 1247888888 888888999986
No 36
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron, metal-binding, oxidoreductase; HET: HEM; 1.35A {Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A* 3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Probab=99.91 E-value=1.6e-23 Score=191.47 Aligned_cols=239 Identities=14% Similarity=0.073 Sum_probs=167.7
Q ss_pred CCCCCCCCCCcccccccCCCCchHHHHHHHHhhCCceEEe--------cCCcCEEEecCHHHHHHHHHhcCcccCCCCCc
Q 043529 34 NLPPGPKPWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLK--------FGSFPVVVGSSVEMAEAFLKTHDALFSYRPKL 105 (307)
Q Consensus 34 ~lpPgP~~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~--------lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~ 105 (307)
..||+|.++++++....-..+++..+.++ ++||||+++. +|..++++|+|+++++++|.+ ...|++++..
T Consensus 18 ~~p~~~~~~~~~~~~~~~~~~p~~~~~~l-r~~gPv~~~~~~~g~~~~lG~~~~~vv~~~~~v~~vl~~-~~~fs~~~~~ 95 (433)
T 3ivy_A 18 PSPNLPPGFDFTDPAIYAERLPVAEFAEL-RSAAPIWWNGQDPGKGGGFHDGGFWAITKLNDVKEISRH-SDVFSSYENG 95 (433)
T ss_dssp --CCCCTTCCTTCHHHHTTCCCHHHHHHH-HHHCSEEEEECCTTCSTTCCSSEEEEECSHHHHHHHHHC-TTTEESTTTC
T ss_pred CCCCCCCCCCCCCHHHhhcCCccHHHHHH-HhcCCEEecccccccccccCCCCEEEEecHHHHHHHHcC-hhhccCCccc
Confidence 45778877777765433344689999998 8899999998 566899999999999999964 4679988754
Q ss_pred Cccce-------eecCCcceEeccCChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHH-H
Q 043529 106 AAGKY-------TTFNYSNITWSQYGPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNL-L 177 (307)
Q Consensus 106 ~~~~~-------~~~~~~~~~~~~~G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~ 177 (307)
..... .....+..++..+|+.|+++||+++ +.|+++.++.+.+.+.++++.+++.+.. ++++|+...+ .
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~dg~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~--~~~~d~~~~~~~ 172 (433)
T 3ivy_A 96 VIPRFKNDIAREDIEVQRFVMLNMDAPHHTRLRKIIS-RGFTPRAVGRLHDELQERAQKIAAEAAA--AGSGDFVEQVSC 172 (433)
T ss_dssp SCCCCCTTCCHHHHHGGGGSGGGCCTTHHHHHHHHHG-GGSCHHHHHTTHHHHHHHHHHHHHHHHH--HCEEEHHHHTTS
T ss_pred ccccccccccccccccccCCccccChHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHhh--CCCeeHHHHHHH
Confidence 33210 0111133455678999999999994 8899999999999999999999999975 3578998887 9
Q ss_pred HHHHHHHHHHHhcCccccchhhHHHHHHHHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 043529 178 DLNLEVMSRMVLGKKYTNEIVARHEFKEMADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHN 257 (307)
Q Consensus 178 ~~t~~ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 257 (307)
.+++++++.+ ||.+.+ ....+.+. ...+.. ...|.+... +..+..+++.+++.++|++++
T Consensus 173 ~~~~~vi~~l-~G~~~~----~~~~~~~~----~~~~~~----~~~p~~~~~-------~~~~~~~~~~~~~~~~i~~r~ 232 (433)
T 3ivy_A 173 ELPLQAIAGL-LGVPQE----DRGKLFHW----SNEMTG----NEDPEYAHI-------DPKASSAELIGYAMKMAEEKA 232 (433)
T ss_dssp HHHHHHHHHH-HTCCHH----HHHHHHHH----HTTCSC----CCCGGGTTC-------CHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHH-cCCCHH----HHHHHHHH----HHHHhc----cCCchhhhH-------HHHHHHHHHHHHHHHHHHHHh
Confidence 9999999996 996431 12223322 221111 122322110 223456677888888888875
Q ss_pred hhccCCCCCCCCCHHHHHhhhcCCCCccccCchHHHHHHHHHHhhccCCC
Q 043529 258 ARRKGVDNYEAKDMMDVLLQLADDPTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 258 ~~~~~~~~~~~~d~ld~ll~~~~~~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
+. ...|+++.|++...+ +..+|++++.+++.++++|||||
T Consensus 233 ~~-------~~~dll~~ll~~~~~---~~~ls~~ei~~~~~~ll~AG~dT 272 (433)
T 3ivy_A 233 KN-------PADDIVTQLIQADID---GEKLSDDEFGFFVVMLAVAGNET 272 (433)
T ss_dssp -------------CHHHHHSCC-----CCCCCHHHHHHHHHHHHHHSSHH
T ss_pred cC-------CCCcHHHHHHhhhcC---CCCCCHHHHHHHHHHHHHhhhHH
Confidence 42 246999999984322 34699999999999999999985
No 37
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase, metal-binding, AN biosynthesis, TIE-ROD mechanism of action; HET: HEM; 1.59A {Saccharopolyspora erythraea} PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Probab=99.91 E-value=2.3e-23 Score=189.17 Aligned_cols=237 Identities=17% Similarity=0.171 Sum_probs=163.0
Q ss_pred HHHHHhhcCCCCCCCCCCCCCcccccccCCCCchHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCC
Q 043529 23 LLSLRLRRRELNLPPGPKPWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYR 102 (307)
Q Consensus 23 ~l~~~~~~~~~~lpPgP~~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R 102 (307)
|+..+....+.+-+|||+ + ..+++..+.++++ |||| ++|+.++++++|+++++++|.++ +.|++|
T Consensus 8 ~~iyr~~~~pl~~~PGp~----~------~~~p~~~~~~l~~-~gpv---~~~~~~~~vv~~~~~v~~vl~~~-~~f~~~ 72 (411)
T 2jjn_A 8 TCCARRTLTTIDEVPGMA----D------ETALLDWLGTMRE-KQPV---WQDRYGVWHVFRHADVQTVLRDT-ATFSSD 72 (411)
T ss_dssp ---------CCCSCCCSS----C------HHHHHHHHHHHHH-HCSE---EECTTSCEEECSHHHHHHHHHCT-TTEESC
T ss_pred HHhhhcccCCCCCCCCcc----c------ccChHHHHHHHHH-hCCc---ccCCCCeEEECCHHHHHHHHcCc-ccccCc
Confidence 344433333344467775 1 1357888888876 9998 67878999999999999999864 479988
Q ss_pred CCcCccceeecCCcceEeccCChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHH-HHHHH
Q 043529 103 PKLAAGKYTTFNYSNITWSQYGPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNL-LDLNL 181 (307)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~t~ 181 (307)
+.... ...... +.+++..+|+.|+++||+++ +.|+++.++.+.+.++++++.+++. .++++|+.+.+ ..+++
T Consensus 73 ~~~~~-~~~~~~-~~~~~~~~g~~~~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~----~~~~~d~~~~~~~~~~~ 145 (411)
T 2jjn_A 73 PTRVI-EGASPT-PGMIHEIDPPEHRALRKVVS-SAFTPRTISDLEPRIRDVTRSLLAD----AGESFDLVDVLAFPLPV 145 (411)
T ss_dssp GGGGS-TTCCCC-TTCGGGCCTTHHHHHHHHHH-HHSCHHHHHTTHHHHHHHHHHHHHT----SCSEEEHHHHTTTHHHH
T ss_pred ccccC-Cccccc-ccccccCCchHHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHhc----CCCceeHHHHHHHHHHH
Confidence 74322 111111 23445568999999999995 8899999999999999999999988 24589998554 57999
Q ss_pred HHHHHHHhcCccccchhhHHHHHHHHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 043529 182 EVMSRMVLGKKYTNEIVARHEFKEMADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRK 261 (307)
Q Consensus 182 ~ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 261 (307)
++++.+ ||.+.+..+ ++.+..+.++..... .+++ +...++..+..+++.+++.++|+++++.
T Consensus 146 ~vi~~~-fG~~~~~~~----~~~~~~~~~~~~~~~----~~~~-------p~~~~~~~~~~~~~~~~~~~~i~~r~~~-- 207 (411)
T 2jjn_A 146 TIVAEL-LGLPPMDHE----QFGDWSGALVDIQMD----DPTD-------PALAERIADVLNPLTAYLKARCAERRAD-- 207 (411)
T ss_dssp HHHHHH-HTCCSCCCS----TTCCHHHHHHHSCCS----CTTC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHH-cCCCHHHHH----HHHHHHHHHHhccCc----cccc-------hHHHHHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 999998 999875422 222233333332111 1110 1122345556777888899999988752
Q ss_pred CCCCCCCCCHHHHHhhhcCCCCccccCchHHHHHHHHHHhhccCCC
Q 043529 262 GVDNYEAKDMMDVLLQLADDPTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 262 ~~~~~~~~d~ld~ll~~~~~~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
...|+++.|++...+ +..+|++++.+++.++++|||||
T Consensus 208 -----~~~d~l~~ll~~~~~---~~~l~~~el~~~~~~~~~AG~eT 245 (411)
T 2jjn_A 208 -----PGDDLISRLVLAEVD---GRALDDEEAANFSTALLLAGHIT 245 (411)
T ss_dssp -----CCSSHHHHHHHCCBT---TBCCCHHHHHHHHHHHHHHHHHH
T ss_pred -----CCCCHHHHHHhcccC---CCCCCHHHHHHHHHHHHHhhhHH
Confidence 147999999984322 34699999999999999999985
No 38
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes teichomyceticus} SCOP: a.104.1.0 PDB: 3o1a_A*
Probab=99.91 E-value=5.7e-23 Score=184.88 Aligned_cols=216 Identities=13% Similarity=0.082 Sum_probs=164.8
Q ss_pred CCCchHHHHHHHHhhCCceEEecCC----cCEEEecCHHHHHHHHHhcCcccCCCCCcCccceeecCCcceEeccCChhH
Q 043529 52 GPLPYRSIHALSEKYGPIMQLKFGS----FPVVVGSSVEMAEAFLKTHDALFSYRPKLAAGKYTTFNYSNITWSQYGPYW 127 (307)
Q Consensus 52 ~~~~~~~~~~~~~kYG~i~~~~lg~----~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~~~~~~~~~~~~~~~~~~G~~w 127 (307)
..+++..+.+| ++||||+++++|+ .++|+++||++++++| ++...|++|+....... .....++++..+|+.|
T Consensus 11 ~~~p~~~~~~l-r~yGpv~~~~~~~~~~g~~~vvv~~~~~v~~vl-~~~~~f~~~~~~~~~~~-~~~~~~~~~~~~g~~~ 87 (384)
T 3oo3_A 11 RLDPVPEFEEL-QKAGPLHEYDTEPGMDGRKQWLVTGHDEVRAIL-ADHERFSSMRPVDDEAD-RALLPGILQAYDPPDH 87 (384)
T ss_dssp TTEECHHHHHH-HHTCSEECCCCC------CEEEECCHHHHHHHH-HCTTTEECSCCCC------CCCTTCGGGCCTTHH
T ss_pred ccChhHHHHHH-HhcCCeeecccccccCCCCEEEEcCHHHHHHHH-hCchhccCCcccccccc-ccccccccccCCChhH
Confidence 46789999999 5999999999986 8999999999999999 45678999886432221 1122345666789999
Q ss_pred HHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHH
Q 043529 128 RQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNLLDLNLEVMSRMVLGKKYTNEIVARHEFKEMA 207 (307)
Q Consensus 128 k~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~t~~ii~~~~fG~~~~~~~~~~~~~~~~~ 207 (307)
+++||+++ +.|++++++.+.+.+.++++.+++.|.+. ++++|+.+.+...+.++++..+||.+.+. ..++.+.+
T Consensus 88 ~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-~~~~d~~~~~~~~~~~~v~~~~~G~~~~~----~~~~~~~~ 161 (384)
T 3oo3_A 88 TRLRRTVA-PAYSARRMERLRPRIEEIVEECLDDFESV-GAPVDFVRHAAWPIPAYIACEFLGVPRDD----QAELSRMI 161 (384)
T ss_dssp HHHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHHHHHS-CSSEEHHHHTTTHHHHHHHHHHHTCCGGG----HHHHHHHH
T ss_pred HHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCccHHHHHHHHHHHHHHHHHcCCCHHH----HHHHHHHH
Confidence 99999995 88999999999999999999999999763 67899999999888777777899987643 23455444
Q ss_pred HHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHhhhcCCCCcccc
Q 043529 208 DELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKDMMDVLLQLADDPTLEVK 287 (307)
Q Consensus 208 ~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~ld~ll~~~~~~~~~~~ 287 (307)
..++. .+ . .++.....+++.+++.++|+++++. ...|+++.|++. + +..
T Consensus 162 ~~~~~----------~~--------~-~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~d~l~~ll~~--~---~~~ 210 (384)
T 3oo3_A 162 RESRE----------SR--------L-PRQRTLSGLGIVNYTKRLTSGKRRD-------PGDGMIGVIVRE--H---GAE 210 (384)
T ss_dssp HHHHH----------CS--------C-HHHHHHHHHHHHHHHHHHHHHHHHS-------CCSSHHHHHHHH--H---GGG
T ss_pred HHHhc----------cC--------C-hHHHHHHHHHHHHHHHHHHHHHHhC-------CCCCHHHHHHHh--c---CCC
Confidence 44332 00 1 1234456777888888999887652 246999999984 1 346
Q ss_pred CchHHHHHHHHHHhhccCCC
Q 043529 288 LERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 288 lt~~~i~~~~~~l~~aG~~~ 307 (307)
+|++++.+++.++++|||||
T Consensus 211 l~~~~l~~~~~~~~~AG~~T 230 (384)
T 3oo3_A 211 ISDEELAGLAEGNLIMAAEQ 230 (384)
T ss_dssp SCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhHHH
Confidence 99999999999999999985
No 39
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding; HET: HEM; 2.30A {Streptomyces avermitilis}
Probab=99.90 E-value=2.3e-23 Score=188.95 Aligned_cols=219 Identities=13% Similarity=0.097 Sum_probs=157.6
Q ss_pred cCCCCchHHHHHHHHhhCCceEEec-CCcCEEEecCHHHHHHHHHhcCcccCCCCCcCccce---eecC---CcceEecc
Q 043529 50 LIGPLPYRSIHALSEKYGPIMQLKF-GSFPVVVGSSVEMAEAFLKTHDALFSYRPKLAAGKY---TTFN---YSNITWSQ 122 (307)
Q Consensus 50 ~l~~~~~~~~~~~~~kYG~i~~~~l-g~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~~~~~---~~~~---~~~~~~~~ 122 (307)
.+..+++..+.+| ++||||+++++ |+.++|+++||++++++|.++ .|++++....... +... ..++++..
T Consensus 21 ~~~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 97 (408)
T 3abb_A 21 TCPYQPPKAYEER-RGESPLTQVTLFDGRPAWLITGHAEGRALLVDP--RLSSDWGHPDFPVVVRRTEDRGGLAFPLIGV 97 (408)
T ss_dssp SSTTSCCHHHHHH-CCSSSEEEEECTTSCEEEEECCHHHHHHHHTCT--TEECCTTSTTCCCCC---------CCTTTTC
T ss_pred ccccCchHHHHHH-HhcCCeeeeecCCCCcEEEEeCHHHHHHHHcCC--CcccccccccccccccCCccccccccccccC
Confidence 3456789999999 89999999998 888999999999999999864 3666553111110 1110 11234556
Q ss_pred CChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHHHH-HHHHHHHHHHhcCccccchhhHH
Q 043529 123 YGPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNLLD-LNLEVMSRMVLGKKYTNEIVARH 201 (307)
Q Consensus 123 ~G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~t~~ii~~~~fG~~~~~~~~~~~ 201 (307)
+|+.|+++||+++ +.|+++.++.+.+.+.++++.+++.|... |+++|+.+.+.. +++++++. +||.+.+. ..
T Consensus 98 ~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-g~~~d~~~~~~~~~~~~vi~~-~~G~~~~~----~~ 170 (408)
T 3abb_A 98 DDPVHARQRRMLI-PSFGVKRMNAIRPRLQSLVDRLLDDMLAK-GPGADLVSAFALPVPSVAICE-LLGVPYGD----HD 170 (408)
T ss_dssp CTTHHHHHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHHHHHT-CSCEEHHHHTTTHHHHHHHHH-HHTCCGGG----HH
T ss_pred CchHHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHH-HhCCCHHH----HH
Confidence 8999999999995 88999999999999999999999999853 568999988764 88999997 79987642 23
Q ss_pred HHHHHHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHhhhcCC
Q 043529 202 EFKEMADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKDMMDVLLQLADD 281 (307)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~ld~ll~~~~~ 281 (307)
.+.+.+..++.. ..| + +..+..+.+.+++.++|+++++.. ..|+++.|++...+
T Consensus 171 ~~~~~~~~~~~~--------~~~--~---------~~~~~~~~~~~~~~~~i~~r~~~~-------~~d~l~~ll~~~~~ 224 (408)
T 3abb_A 171 FFEECSRNFVGA--------ATS--A---------EADAAFGELYTYLHGLVGRKQAEP-------EDGLLDELIARQLE 224 (408)
T ss_dssp HHHHHHHHHC-------------------------CCSSHHHHHHHHHHHHHHHHHHSC-------CSSHHHHHHHHHHT
T ss_pred HHHHHHHHHhcc--------cch--H---------HHHHHHHHHHHHHHHHHHHHHhCC-------CCCHHHHHHhcccC
Confidence 344433332210 011 1 112345566778888888887531 36999999984322
Q ss_pred CCccccCchHHHHHHHHHHhhccCCC
Q 043529 282 PTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 282 ~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
+..+|++++.+++.++++|||||
T Consensus 225 ---~~~ls~~ei~~~~~~l~~AG~dT 247 (408)
T 3abb_A 225 ---EGDLDHDEVVMIALVLLVAGHET 247 (408)
T ss_dssp ---SSSCCHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCCCHHHHHHHHHHHHHHHHHH
Confidence 34699999999999999999985
No 40
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans}
Probab=99.90 E-value=6.8e-23 Score=188.19 Aligned_cols=230 Identities=15% Similarity=0.066 Sum_probs=164.9
Q ss_pred chHHHHHHHHhhCCce--EEe-cCCcCEEEecCHHHHHHHHHhcCcccCCCCCcCccceeec------------CCcceE
Q 043529 55 PYRSIHALSEKYGPIM--QLK-FGSFPVVVGSSVEMAEAFLKTHDALFSYRPKLAAGKYTTF------------NYSNIT 119 (307)
Q Consensus 55 ~~~~~~~~~~kYG~i~--~~~-lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~~~~~~~~------------~~~~~~ 119 (307)
++..+.++ ++||||+ +++ +|+.++++|+++++++++|.++ ..|++|+.......... ...+.+
T Consensus 47 p~~~~~~l-r~~gPV~~~~~~~~g~~~~~vvt~~~~v~~vl~~~-~~fs~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~l 124 (450)
T 3tkt_A 47 LLDRFDAL-RAEAPVAKVVAPDDEHEPFWLVSSFDGVMKASKDN-ATFLNNPKSTVFTLRVGEMMAKAITGGSPHLVESL 124 (450)
T ss_dssp HHHHHHHH-HHHCSEEEECCTTCSSCCEEEECSHHHHHHHHHCT-TTEESSSSCSSCCCHHHHHHHHHHHTSCSCSSCCG
T ss_pred chHHHHHH-HhcCCeecccccCCCCCCEEEEecHHHHHHHHhCc-ccccCCCccccccccccccccccccccccccccCc
Confidence 77888887 7799999 998 7889999999999999999755 78999886433221110 012345
Q ss_pred eccCChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHH-HHHHHHHHHHHHhcCccccchh
Q 043529 120 WSQYGPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNL-LDLNLEVMSRMVLGKKYTNEIV 198 (307)
Q Consensus 120 ~~~~G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~t~~ii~~~~fG~~~~~~~~ 198 (307)
+..+|+.|+++||+++ +.|++++++.+.+.+.++++.+++.+.+. ++++|+.+.+ ..+++++|+.+ ||.+.+.
T Consensus 125 ~~~dg~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~~-~~~~dl~~~~~~~~~~~vi~~l-~G~~~~~--- 198 (450)
T 3tkt_A 125 VQMDAPKHPKLRRLTQ-DWFMPKNLARLDGEIRKIANEAIDRMLGA-GEEGDFMALVAAPYPLHVVMQI-LGVPPED--- 198 (450)
T ss_dssp GGCCTTHHHHHHHHHH-TTTSHHHHGGGHHHHHHHHHHHHHHHHHT-CSEEEHHHHTTTHHHHHHHHHH-TTCCGGG---
T ss_pred ccCCCHHHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCEeeHHHHHHHHHHHHHHHH-cCCChhH---
Confidence 6678999999999985 89999999999999999999999999864 5789988887 68999999985 9976532
Q ss_pred hHHHHHHHHHHHHHhccCCccccccccccccc-cccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHhh
Q 043529 199 ARHEFKEMADELFILGGVLDIGDMIPWLGFLD-LQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKDMMDVLLQ 277 (307)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~ld~ll~ 277 (307)
...+.+..+.++... ...+.|+..++. .....++..+..+++.+++.++|+++++.. ..|+++.|++
T Consensus 199 -~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~-------~~dll~~ll~ 266 (450)
T 3tkt_A 199 -EPKMLFLTQQMFGGQ----DEDMNKSGLKDLPPEQISQIVAGAVAEFERYFAGLAAERRRNP-------TDDVATVIAN 266 (450)
T ss_dssp -HHHHHHHHHTTSCCC--------------------HHHHHHHHHHHHHHHHHHHHHHHHHSC-------CSSHHHHHHT
T ss_pred -HHHHHHHHHHHhccc----cchhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CCCHHHHHHh
Confidence 234444333322211 112233222211 122234556667788889999999887631 4699999998
Q ss_pred hcCCCCccccCchHHHHHHHHHHhhccCCC
Q 043529 278 LADDPTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 278 ~~~~~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
...+ +..+|++++++++.++++|||||
T Consensus 267 ~~~~---~~~ls~~ei~~~~~~l~~AG~dT 293 (450)
T 3tkt_A 267 AVVD---GEPMSDRDTAGYYIITASAGHDT 293 (450)
T ss_dssp CEET---TEECCHHHHHHHHHHHHHHHSHH
T ss_pred cccc---CCCCCHHHHHHHHHHHHHHHHHH
Confidence 4322 34699999999999999999985
No 41
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2, anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A {Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A* 2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Probab=99.90 E-value=1.9e-22 Score=182.86 Aligned_cols=232 Identities=12% Similarity=0.110 Sum_probs=167.4
Q ss_pred CCCCCCCCCCCCcccccccCCCCchHHHHHHHHhhCCceEEec-CCcC-EEEecCHHHHHHHHHhcCcccCCCCCcCccc
Q 043529 32 ELNLPPGPKPWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKF-GSFP-VVVGSSVEMAEAFLKTHDALFSYRPKLAAGK 109 (307)
Q Consensus 32 ~~~lpPgP~~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~l-g~~~-~Vvv~~~e~~~evl~~~~~~f~~R~~~~~~~ 109 (307)
..+.+|||+++|+.++. ..+++..+.++ ++||||+++++ |+.+ +|+++||++++++|.+ ..|++++......
T Consensus 6 ~~~~~~~~~~~p~~~~~---~~~p~~~~~~l-~~~Gpv~~~~~~~g~~p~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~ 79 (406)
T 1s1f_A 6 ISQAVPPVRDWPAVDLP---GSDFDPVLTEL-MREGPVTRISLPNGEGWAWLVTRHDDVRLVTND--PRFGREAVMDRQV 79 (406)
T ss_dssp --CCSCCEEECCCCCCC---TTCCCHHHHHH-HHHCSEEEEECSBSBSCEEEECSHHHHHHHHTC--TTEESTTTTTTTB
T ss_pred HhhhccCCCCCCCCccc---ccCchHHHHHH-HhcCCeeeeccCCCcccEEEEcCHHHHHHHHcC--CCccCCcCCCCCc
Confidence 34668999989998873 45688888888 47999999996 5555 9999999999999985 4688876432111
Q ss_pred ----e-eecCCcceEeccCChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHHH-HHHHHH
Q 043529 110 ----Y-TTFNYSNITWSQYGPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNLL-DLNLEV 183 (307)
Q Consensus 110 ----~-~~~~~~~~~~~~~G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~t~~i 183 (307)
. .. +.+.+++..+|+.|+++||+++ +.|+++.++.+.+.+.++++.+++.|.+. ++++|+.+.+. .+++++
T Consensus 80 ~~~~~~~~-~~~~~l~~~dg~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-~~~~d~~~~~~~~~~~~v 156 (406)
T 1s1f_A 80 TRLAPHFI-PARGAVGFLDPPDHTRLRRSVA-AAFTARGVERVRERSRGMLDELVDAMLRA-GPPADLTEAVLSPFPIAV 156 (406)
T ss_dssp CBSSSSCS-SCTTSGGGCCTTHHHHHHHHHH-HHHSHHHHHHHHHHHHHHHHHHHHHHHHH-CSSEEHHHHTTTHHHHHH
T ss_pred cccccccc-ccccccccCCchHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCccHHHHHhhHhHHHH
Confidence 1 11 1123345568999999999996 77899999999999999999999999842 56899887664 699999
Q ss_pred HHHHHhcCccccchhhHHHHHHHHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 043529 184 MSRMVLGKKYTNEIVARHEFKEMADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGV 263 (307)
Q Consensus 184 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 263 (307)
++. +||.+.+. ...+.+....++.... | .+ +..+..+.+.+++.++|+++++.
T Consensus 157 i~~-~~G~~~~~----~~~~~~~~~~~~~~~~--------~-~~---------~~~~~~~~~~~~~~~~i~~r~~~---- 209 (406)
T 1s1f_A 157 ICE-LMGVPATD----RHSMHTWTQLILSSSH--------G-AE---------VSERAKNEMNAYFSDLIGLRSDS---- 209 (406)
T ss_dssp HHH-HHTCCGGG----HHHHHHHHHHHHHHHT--------T-CC---------CCHHHHTHHHHHHHHHHHTSCCS----
T ss_pred HHH-HhCCCHHH----HHHHHHHHHHHHhccC--------C-HH---------HHHHHHHHHHHHHHHHHHHHHhC----
Confidence 998 69987643 2344444444333211 1 01 11234556677777777776431
Q ss_pred CCCCCCCHHHHHhhhcCCCCccccCchHHHHHHHHHHhhccCCC
Q 043529 264 DNYEAKDMMDVLLQLADDPTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 264 ~~~~~~d~ld~ll~~~~~~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
...|+++.|++...+ ..+|++++.+++.++++|| ||
T Consensus 210 ---~~~d~l~~ll~~~~~----~~ls~~el~~~~~~l~~AG-eT 245 (406)
T 1s1f_A 210 ---AGEDVTSLLGAAVGR----DEITLSEAVGLAVLLQIGG-EA 245 (406)
T ss_dssp ---CCCSHHHHHHHHHHT----TSSCHHHHHHHHHHHHHHT-TH
T ss_pred ---CCCCHHHHHHHhhcc----cCCCHHHHHHHHHHHHHhh-HH
Confidence 246999999984321 3599999999999999999 85
No 42
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase; HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=99.90 E-value=6.2e-23 Score=186.15 Aligned_cols=224 Identities=18% Similarity=0.246 Sum_probs=162.0
Q ss_pred cCCCCchHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCC--cCcc-c-----eeec-CCcceEe
Q 043529 50 LIGPLPYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPK--LAAG-K-----YTTF-NYSNITW 120 (307)
Q Consensus 50 ~l~~~~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~--~~~~-~-----~~~~-~~~~~~~ 120 (307)
.+..+++..+.+| ++||||+++++|+.++|+++||++++++|.++. |+.++. .... . .+.. ...++++
T Consensus 12 ~~~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 88 (408)
T 1odo_A 12 PTGADHHTEHRTL-REGGPATWVDVLGVQAWSVSDPVLLKQLLTSSD--VSKDARAHWPAFGEVVGTWPLALWVAVENMF 88 (408)
T ss_dssp TTCTTHHHHHHHH-HTTCSEEEEEETTEEEEEECCHHHHHHHTTCTT--EESCHHHHCTTHHHHTTTCTTTHHHHCCSGG
T ss_pred cccCChHHHHHHH-HHhCCeEEeccCCCCEEEECCHHHHHHHHcCCC--ccccccccccccccccccccccccccccccc
Confidence 3455789999999 999999999998889999999999999998653 555542 1100 0 0000 0122345
Q ss_pred ccCChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhc-CCceechHHHH-HHHHHHHHHHHhcCccccchh
Q 043529 121 SQYGPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESS-GKPIILKDNLL-DLNLEVMSRMVLGKKYTNEIV 198 (307)
Q Consensus 121 ~~~G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~-~~t~~ii~~~~fG~~~~~~~~ 198 (307)
..+|+.|+++||+++ +.|++++++.+.+.+.++++.+++.|.+.. ++++|+.+.+. .+++++++. +||.+.+.
T Consensus 89 ~~~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~--- 163 (408)
T 1odo_A 89 TAYGPNHRKLRRLVA-PAFSARRVDAMRPAVEAMVTGLVDRLAELPAGEPVDLRQELAYPLPIAVIGH-LMGVPQDR--- 163 (408)
T ss_dssp GCCHHHHHHHHHTTG-GGGSHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCEEHHHHTTTHHHHHHHHH-HHTCCHHH---
T ss_pred ccCChHHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhhHHHHHHH-HhCCCHHH---
Confidence 678999999999995 889999999999999999999999998644 57899998887 599999996 79986531
Q ss_pred hHHHHHHHHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHhhh
Q 043529 199 ARHEFKEMADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKDMMDVLLQL 278 (307)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~ld~ll~~ 278 (307)
...+.+.++.++.. . . .. ++..+..+++.+++.++|+++++.. ..|+++.|++.
T Consensus 164 -~~~~~~~~~~~~~~----~----------~---~~-~~~~~~~~~~~~~~~~~i~~r~~~~-------~~d~l~~ll~~ 217 (408)
T 1odo_A 164 -RDGFRALVDGVFDT----T----------L---DQ-AEAQANTARLYEVLDQLIAAKRATP-------GDDMTSLLIAA 217 (408)
T ss_dssp -HHHHHHHHHHHHCT----T----------C---CH-HHHHHHHHHHHHHHHHHHHHHHHSC-------CSSHHHHHHHH
T ss_pred -HHHHHHHHHHHhcc----c----------C---CH-HHHHHHHHHHHHHHHHHHHHHhhCC-------CCCHHHHHHHh
Confidence 23444444433321 0 0 01 2344566778888999999887521 36999999984
Q ss_pred cCCCCccccCchHHHHHHHHHHhhccCCC
Q 043529 279 ADDPTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 279 ~~~~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
..++..+..+|+++|.+++.++++|||||
T Consensus 218 ~~~~~~~~~l~~~ei~~~~~~~~~AG~dT 246 (408)
T 1odo_A 218 RDDEGDGDRLSPEELRDTLLLMISAGYET 246 (408)
T ss_dssp HCC-----CCCHHHHHHHHHHHHHHHHTT
T ss_pred cccccccCCCCHHHHHHHHHHHHHHhHHH
Confidence 33211134699999999999999999997
No 43
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET: HEM; 2.90A {Streptomyces coelicolor} PDB: 4fxb_A*
Probab=99.90 E-value=2.5e-22 Score=182.70 Aligned_cols=219 Identities=12% Similarity=0.049 Sum_probs=164.0
Q ss_pred CCCCchHHHHHHHHhhCCceEEecC-CcCEEEecCHHHHHHHHHhcCcccCCCCCcCccceeec------CCcceEeccC
Q 043529 51 IGPLPYRSIHALSEKYGPIMQLKFG-SFPVVVGSSVEMAEAFLKTHDALFSYRPKLAAGKYTTF------NYSNITWSQY 123 (307)
Q Consensus 51 l~~~~~~~~~~~~~kYG~i~~~~lg-~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~~~~~~~~------~~~~~~~~~~ 123 (307)
...+++..+.+|+++ ||||++++| +.++||++|+++++++|.++ .|++++.......... ..+.+++..+
T Consensus 27 ~~~dp~~~~~~l~~~-Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 103 (417)
T 3tyw_A 27 CPFAAPAEYAALRTD-DPVARVTLPTRREAWVVTRYDDVRELLSDP--RVSADIRRPGFPALGEGEQEAGARFRPFIRTD 103 (417)
T ss_dssp STTSCCTHHHHHHHT-CTEEEEECTTSCEEEEECCHHHHHHHHHCT--TEECCSSSTTCCCSSTTTSTTSSSCCCGGGCC
T ss_pred cccCchHHHHHHHhh-CCeeeeecCCCCCeEEEcCHHHHHHHHcCC--CcccCCccccccccccccccccccccchhhcC
Confidence 356788899999988 999999997 48999999999999999865 7888653221111111 1234556678
Q ss_pred ChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHH-HHHHHHHHHHHHhcCccccchhhHHH
Q 043529 124 GPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNL-LDLNLEVMSRMVLGKKYTNEIVARHE 202 (307)
Q Consensus 124 G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~t~~ii~~~~fG~~~~~~~~~~~~ 202 (307)
|+.|+++||+++ +.|++++++.+.+.+.+++..+++.+.+. |+++|+.+.+ ..++.++++.+ ||.+.+.. ..
T Consensus 104 g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-g~~~d~~~~~~~~~~~~vi~~~-~G~~~~~~----~~ 176 (417)
T 3tyw_A 104 APEHTRYRRMLL-PAFTVRRVRAMRPAVQARVDEILDGMLAA-GGPVDLVSAYANAVSTSVICEL-LGIPRHDL----EF 176 (417)
T ss_dssp HHHHHHHHHHHG-GGGCHHHHHHTHHHHHHHHHHHHHHHHHH-CSSEEHHHHTHHHHHHHHHHHH-HTCCTTTT----TH
T ss_pred CcHHHHHHHHHH-hhhCHHHHHHHHHHHHHHHHHHHHHHHhh-CCCcchHHHHHHHHHHHHHHHH-hCCCHHHH----HH
Confidence 999999999995 88999999999999999999999999874 6789999987 57889999987 99887632 23
Q ss_pred HHHHHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHhhhcCCC
Q 043529 203 FKEMADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKDMMDVLLQLADDP 282 (307)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~ld~ll~~~~~~ 282 (307)
+......++.. .+ . .++..+..+.+.+++.++|+++++. ...|+++.|++...+
T Consensus 177 ~~~~~~~~~~~---------~~---~------~~~~~~~~~~l~~~~~~~i~~r~~~-------~~~d~l~~ll~~~~~- 230 (417)
T 3tyw_A 177 FRDVTRISGSR---------NS---T------AEQVSEALGGLFGLLGGLVAERREE-------PRDDLISKLVTDHLV- 230 (417)
T ss_dssp HHHHHHHHHSS---------SS---C------TTHHHHHHHHHHHHHHHHHHHHHSS-------CCSSHHHHHHHHTTT-
T ss_pred HHHHHHHHhcc---------cC---C------HHHHHHHHHHHHHHHHHHHHHHhhC-------CCCCHHHHHHHhccc-
Confidence 33333322211 01 0 0233456677888888999888652 247999999984333
Q ss_pred CccccCchHHHHHHHHHHhhccCCC
Q 043529 283 TLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 283 ~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
+..+|++++++++.++++|||||
T Consensus 231 --~~~ls~~el~~~~~~l~~AG~eT 253 (417)
T 3tyw_A 231 --PGNVTTEQLLSTLGITINAGRET 253 (417)
T ss_dssp --TTSSCHHHHHHHHHHHHHHHHHH
T ss_pred --CCCCCHHHHHHHHHHHHhhhHHH
Confidence 23599999999999999999985
No 44
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding, oxidoreductase, omega-hydroxylation, iron, heme, fatty acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium tuberculosis} PDB: 2wm4_A*
Probab=99.90 E-value=2.5e-22 Score=183.69 Aligned_cols=223 Identities=13% Similarity=0.109 Sum_probs=165.9
Q ss_pred CCchHHHHHHHHhhCCceEEecC-------CcCEEEecCHHHHHHHHHhcCcccCCCCCc--C-ccceeecCCcceEecc
Q 043529 53 PLPYRSIHALSEKYGPIMQLKFG-------SFPVVVGSSVEMAEAFLKTHDALFSYRPKL--A-AGKYTTFNYSNITWSQ 122 (307)
Q Consensus 53 ~~~~~~~~~~~~kYG~i~~~~lg-------~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~--~-~~~~~~~~~~~~~~~~ 122 (307)
.+++..+.+|+ +|||||++++| +.++|+|+||++++++|.++ +.|++|+.. . ....+... +.+++..
T Consensus 44 ~~p~~~~~~l~-~~Gpv~~~~~~~~~~~~~g~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~-~~~l~~~ 120 (435)
T 2wm5_A 44 DVRDGAFATLR-REAPISFWPTIELPGFVAGNGHWALTKYDDVFYASRHP-DIFSSYPNITINDQTPELAEY-FGSMIVL 120 (435)
T ss_dssp HHHHHHHHHHH-HHCSEEEECCCCC---CCCCCEEEECSHHHHHHHHHCT-TTEECSSCCSSSCCCHHHHHH-HHGGGGC
T ss_pred CChhHHHHHHH-hcCCeEecccccccccCCCCCeEEEcCHHHHHHHHcCc-ccccCccccccCccccchhhh-ccccccC
Confidence 35788888885 69999999986 56899999999999999875 579998742 1 11111111 2234445
Q ss_pred CChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhc-CCceechHHH-HHHHHHHHHHHHhcCccccchhhH
Q 043529 123 YGPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESS-GKPIILKDNL-LDLNLEVMSRMVLGKKYTNEIVAR 200 (307)
Q Consensus 123 ~G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~-~~~t~~ii~~~~fG~~~~~~~~~~ 200 (307)
+|+.|+++||+++ +.|+++.++.+.+.+.++++.+++.|.+.. ++++|+.+.+ ..+++++++.+ ||.+.+. .
T Consensus 121 dg~~h~~~R~~l~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~~~~~vd~~~~~~~~~~~~vi~~~-~G~~~~~----~ 194 (435)
T 2wm5_A 121 DDPRHQRLRSIVS-RAFTPKVVARIEAAVRDRAHRLVSSMIANNPDRQADLVSELAGPLPLQIICDM-MGIPKAD----H 194 (435)
T ss_dssp CTTHHHHHHHHHH-HTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEHHHHTTTHHHHHHHHHH-HTCCGGG----H
T ss_pred CcHHHHHHHHHhH-HhhCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEehHHHHHHHHHHHHHHHH-cCCCHHH----H
Confidence 7999999999995 889999999999999999999999998753 3489998766 78999999999 9998753 2
Q ss_pred HHHHHHHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHhhhcC
Q 043529 201 HEFKEMADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKDMMDVLLQLAD 280 (307)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~ld~ll~~~~ 280 (307)
+.+.+....++... .|.+ .+ .+ ++..+..+++..++.++|+++++. ...|+++.|++...
T Consensus 195 ~~~~~~~~~~~~~~--------~p~~--~~--~~-~~~~~~~~~~~~~~~~~i~~r~~~-------~~~dll~~ll~~~~ 254 (435)
T 2wm5_A 195 QRIFHWTNVILGFG--------DPDL--AT--DF-DEFMQVSADIGAYATALAEDRRVN-------HHDDLTSSLVEAEV 254 (435)
T ss_dssp HHHHHHHHHHHHTT--------CTTS--CC--CH-HHHHHHHHHHHHHHHHHHHHHHHS-------CCSSHHHHHHHCCB
T ss_pred HHHHHHHHHHhccC--------Ccch--hh--hH-HHHHHHHHHHHHHHHHHHHHHhcC-------CCCCHHHHHHhhhc
Confidence 34555444444321 1321 11 11 344556778888999999988762 14799999998432
Q ss_pred CCCccccCchHHHHHHHHHHhhccCCC
Q 043529 281 DPTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 281 ~~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
+ +..+|++++.+++.++++|||||
T Consensus 255 ~---~~~ls~~ei~~~~~~l~~AG~dT 278 (435)
T 2wm5_A 255 D---GERLSSREIASFFILLVVAGNET 278 (435)
T ss_dssp T---TBCCCHHHHHHHHHHHHHHTTHH
T ss_pred c---CCCCCHHHHHHHHHHHHHHhhHH
Confidence 2 34699999999999999999985
No 45
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus subtilis} SCOP: a.104.1.0 PDB: 3ejd_B* 3eje_B*
Probab=99.90 E-value=1.7e-22 Score=182.95 Aligned_cols=222 Identities=19% Similarity=0.229 Sum_probs=161.9
Q ss_pred CCchHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCcCccc---eeecCCcceEeccCChhHHH
Q 043529 53 PLPYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKLAAGK---YTTFNYSNITWSQYGPYWRQ 129 (307)
Q Consensus 53 ~~~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~~~~---~~~~~~~~~~~~~~G~~wk~ 129 (307)
.+++..+.+| ++|||||++++|+.++|+++|+++++++|.++ +.|++|+...... .+....+.+++..+|+.|++
T Consensus 13 ~~p~~~~~~~-r~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~h~~ 90 (404)
T 3ejb_B 13 KNPYSFYDTL-RAVHPIYKGSFLKYPGWYVTGYEETAAILKDA-RFKVRTPLPESSTKYQDLSHVQNQMMLFQNQPDHRR 90 (404)
T ss_dssp HCHHHHHHHH-HHHCSEEEEEETTEEEEEECCHHHHHHHHHCT-TEECCCSSCTTCCTTHHHHHHHHTSGGGCCTTHHHH
T ss_pred cCchHHHHHH-HhhCCEeeccCCCCCEEEEecHHHHHHHHhCc-ccccCcccccccccccchhhhhhcchhhcCCchHHH
Confidence 4688888888 58999999999999999999999999999876 6899887532211 11111123455678999999
Q ss_pred HHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHH-HHHHHHHHHHHHhcCccccchhhHHHHHHHHH
Q 043529 130 LRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNL-LDLNLEVMSRMVLGKKYTNEIVARHEFKEMAD 208 (307)
Q Consensus 130 ~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~t~~ii~~~~fG~~~~~~~~~~~~~~~~~~ 208 (307)
+||+++ +.|++++++.+.+.+.++++.+++.+.+ +.++|+...+ ..++.++++. +||.+.+. ...+.+...
T Consensus 91 ~Rr~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~--~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~----~~~~~~~~~ 162 (404)
T 3ejb_B 91 LRTLAS-GAFTPRTTESYQPYIIETVHHLLDQVQG--KKKMEVISDFAFPLASFVIAN-IIGVPEED----REQLKEWAA 162 (404)
T ss_dssp HHHHHH-GGGSHHHHHTTHHHHHHHHHHHHHTTTT--TSEEEHHHHTHHHHHHHHHHH-HHTCCGGG----HHHHHHHHH
T ss_pred HHHHHH-hhcCHHHHHHHHHHHHHHHHHHHHHhhh--cCCcchHHHHHHHHHHHHHHH-HcCCCHHH----HHHHHHHHH
Confidence 999995 8899999999999999999999998875 4678876554 4589999998 58987642 234444444
Q ss_pred HHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHhhhcCCCCccccC
Q 043529 209 ELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKDMMDVLLQLADDPTLEVKL 288 (307)
Q Consensus 209 ~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~ld~ll~~~~~~~~~~~l 288 (307)
.+..... .|+. ....++.....+.+.+++.++|+++++. ...|+++.|+. ..+ +..+
T Consensus 163 ~~~~~~~-------~p~~-----~~~~~~~~~~~~~~~~~~~~~i~~r~~~-------~~~d~l~~ll~-~~~---~~~l 219 (404)
T 3ejb_B 163 SLIQTID-------FTRS-----RKALTEGNIMAVQAMAYFKELIQKRKRH-------PQQDMISMLLK-GRE---KDKL 219 (404)
T ss_dssp HHHGGGS-------TTCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHS-------CCSSHHHHHHH-C-------CC
T ss_pred HHHHhcc-------CCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CcchHHHHHHh-ccc---CCCC
Confidence 3333221 1321 1122344566778888899999988752 25799999993 322 3469
Q ss_pred chHHHHHHHHHHhhccCCC
Q 043529 289 ERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 289 t~~~i~~~~~~l~~aG~~~ 307 (307)
|++++.+++.++++|||||
T Consensus 220 s~~el~~~~~~l~~AG~dT 238 (404)
T 3ejb_B 220 TEEEAASTCILLAIAGHET 238 (404)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcchHH
Confidence 9999999999999999985
No 46
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox oxidoreductase; HET: HEM; 1.75A {Pseudonocardia autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Probab=99.89 E-value=3.1e-22 Score=181.77 Aligned_cols=218 Identities=18% Similarity=0.184 Sum_probs=161.2
Q ss_pred CCCCchHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCcCcc---c-eeecCCcceEeccCChh
Q 043529 51 IGPLPYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKLAAG---K-YTTFNYSNITWSQYGPY 126 (307)
Q Consensus 51 l~~~~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~~~---~-~~~~~~~~~~~~~~G~~ 126 (307)
+..+++..+.+| ++|||||++++|+.++|+++||++++++|.++. |++|+..... . .+....+.+++..+|+.
T Consensus 18 ~~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~~--f~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~ 94 (411)
T 3a4g_A 18 FWQNPHPAYAAL-RAEDPVRKLALPDGPVWLLTRYADVREAFVDPR--LSKDWRHTLPEDQRADMPATPTPMMILMDPPD 94 (411)
T ss_dssp GTTCCHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHTCTT--EESCGGGGSCGGGCTTCCSCSSCCGGGCCTTH
T ss_pred hhcCchHHHHHH-HhcCCeeeccCCCCCEEEEecHHHHHHHHhCCC--cccccccccccccccccCcccccccccCCchH
Confidence 455789999999 899999999999899999999999999998653 9888743211 0 01110123345568999
Q ss_pred HHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHH-HHHHHHHHHHHHhcCccccchhhHHHHHH
Q 043529 127 WRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNL-LDLNLEVMSRMVLGKKYTNEIVARHEFKE 205 (307)
Q Consensus 127 wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~t~~ii~~~~fG~~~~~~~~~~~~~~~ 205 (307)
|+++||+++ +.|+++.++.+.+.+.++++.+++.|.+ ++++|+...+ ..+++++++.+ ||.+.+. ...+.+
T Consensus 95 h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~--~~~vd~~~~~~~~~~~~vi~~~-~G~~~~~----~~~~~~ 166 (411)
T 3a4g_A 95 HTRLRKLVG-RSFTVRRMNELEPRITEIADGLLAGLPT--DGPVDLMREYAFQIPVQVICEL-LGVPAED----RDDFSA 166 (411)
T ss_dssp HHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHHHHHSCS--SSCEEHHHHTTTTHHHHHHHHH-HTCCGGG----HHHHHH
T ss_pred HHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHHHh--cCCccHHHHHHHHhHHHHHHHH-hCCCHHH----HHHHHH
Confidence 999999995 8899999999999999999999999875 3689987554 67999999975 9987642 223444
Q ss_pred HHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHhhhcCCCCcc
Q 043529 206 MADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKDMMDVLLQLADDPTLE 285 (307)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~ld~ll~~~~~~~~~ 285 (307)
....++.. .| | ++.....+++.+++.++|+++++.. ..|+++.|++...++ +
T Consensus 167 ~~~~~~~~---------~p-----~-----~~~~~~~~~~~~~~~~~i~~r~~~~-------~~d~l~~ll~~~~~~--~ 218 (411)
T 3a4g_A 167 WSSVLVDD---------SP-----A-----DDKNAAMGKLHGYLSDLLERKRTEP-------DDALLSSLLAVSDED--G 218 (411)
T ss_dssp HHHHHTTS---------SC-----T-----TTHHHHHHHHHHHHHHHHHHHHHSC-------CSSHHHHHHHCCCTT--C
T ss_pred HHHHHhcc---------CC-----H-----HHHHHHHHHHHHHHHHHHHHHHhCC-------CCCHHHHHHHhhccC--C
Confidence 33322211 12 1 1223456677888888998887521 469999999843211 3
Q ss_pred ccCchHHHHHHHHHHhhccCCC
Q 043529 286 VKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 286 ~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
..+|++++.+++.++++|||||
T Consensus 219 ~~ls~~ei~~~~~~l~~AG~dT 240 (411)
T 3a4g_A 219 DRLSQEELVAMAMLLLIAGHET 240 (411)
T ss_dssp CCCCHHHHHHHHHHHHHHHSHH
T ss_pred CCCCHHHHHHHHHHHHHhchhh
Confidence 4699999999999999999985
No 47
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM EDO; 1.37A {Citrobacter braakii} PDB: 4fmx_A* 4fyz_A* 1t2b_A* 3bdz_A* 3be0_A*
Probab=99.89 E-value=2.2e-22 Score=181.89 Aligned_cols=217 Identities=12% Similarity=0.011 Sum_probs=163.6
Q ss_pred CCCCchHHHHHHHHhh--CCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCcCccceeecCCcceEeccCChhHH
Q 043529 51 IGPLPYRSIHALSEKY--GPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKLAAGKYTTFNYSNITWSQYGPYWR 128 (307)
Q Consensus 51 l~~~~~~~~~~~~~kY--G~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~~~~~~~~~~~~~~~~~~G~~wk 128 (307)
+..+++..+.+|+++| |||+++++|+ ++++++||++++++| ++.+.|++|+....... ......+++..+|+.|+
T Consensus 17 ~~~~p~~~~~~l~~~Y~~Gpv~~~~~~~-~~~vv~~~~~v~~vl-~~~~~f~~~~~~~~~~~-~~~~~~~~~~~~g~~~~ 93 (398)
T 4fb2_A 17 PDGTPHAFFEALRDEAETTPIGWSEAYG-GHWVVAGYKEIQAVI-QNTKAFSNKGVTFPRYE-TGEFELMMAGQDDPVHK 93 (398)
T ss_dssp TTSSSHHHHHHHHHHHTTCSEEEECGGG-CEEEECSHHHHHHHH-TCCSSEEGGGCSSSCC-----CCCTTTTCCTTHHH
T ss_pred hhcChhHHHHHHHhcCCCCCeEEecCCC-CEEEEccHHHHHHHH-hChhhccCCcccccCCC-CcccccCcccCCchHHH
Confidence 3457899999999999 9999999986 699999999999999 45678999876433221 11223445667899999
Q ss_pred HHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHH-HHHHHHHHHHHHHhcCccccchhhHHHHHHHH
Q 043529 129 QLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDN-LLDLNLEVMSRMVLGKKYTNEIVARHEFKEMA 207 (307)
Q Consensus 129 ~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~t~~ii~~~~fG~~~~~~~~~~~~~~~~~ 207 (307)
++||+++ +.|+++.++.+.+.+.++++.+++.+.+ +.++|+... ...+++++++. +||.+.+. .+++.+..
T Consensus 94 ~~R~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~--~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~----~~~~~~~~ 165 (398)
T 4fb2_A 94 KYRQLVA-KPFSPEATDLFTEQLRQSTNDLIDARIE--LGEGDAATWLANEIPARLTAI-LLGLPPED----GDTYRRWV 165 (398)
T ss_dssp HHHHHHH-TTTCHHHHHTTHHHHHHHHHHHHHTTTT--TTEEEHCCCCCTTHHHHHHHH-HTTSCGGG----HHHHHHHH
T ss_pred HHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHhh--cCCccHHHHHHHHHHHHHHHH-HcCCCHHH----HHHHHHHH
Confidence 9999995 8899999999999999999999998875 346786444 46799999998 79986542 23444444
Q ss_pred HHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHhhhcCCCCcccc
Q 043529 208 DELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKDMMDVLLQLADDPTLEVK 287 (307)
Q Consensus 208 ~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~ld~ll~~~~~~~~~~~ 287 (307)
..++. |. . . .+..+..+++.+++.++|+++++. ...|+++.|++...+ +..
T Consensus 166 ~~~~~-----------~~---~----~-~~~~~~~~~~~~~~~~~i~~r~~~-------~~~d~l~~ll~~~~~---~~~ 216 (398)
T 4fb2_A 166 WAITH-----------VE---N----P-EEGAEIFAELVAHARTLIAERRTN-------PGNDIMSRVIMSKID---GES 216 (398)
T ss_dssp HHHHH-----------CC---C----H-HHHHHHHHHHHHHHHHHHHHHHHS-------CCSSHHHHHHHCCBT---TBC
T ss_pred HHHhc-----------CC---C----H-HHHHHHHHHHHHHHHHHHHHHHhC-------CCCCHHHHHHHcccC---CCC
Confidence 44332 10 1 0 234556777888899999988762 247999999984322 346
Q ss_pred CchHHHHHHHHHHhhccCCC
Q 043529 288 LERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 288 lt~~~i~~~~~~l~~aG~~~ 307 (307)
+|++++.+++.++++|||||
T Consensus 217 l~~~~i~~~~~~l~~AG~~T 236 (398)
T 4fb2_A 217 LSEDDLIGFFTILLLGGIDN 236 (398)
T ss_dssp CCHHHHHHHHHHCCCCCCHH
T ss_pred CCHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999985
No 48
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis; HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB: 2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Probab=99.89 E-value=4.4e-22 Score=181.06 Aligned_cols=219 Identities=16% Similarity=0.155 Sum_probs=160.7
Q ss_pred CCCCchHHHHHHHHhhCCceEEec-CCcCEEEecCHHHHHHHHHhcCcccCCCCCc-Cccceeec-CCcceEeccCChhH
Q 043529 51 IGPLPYRSIHALSEKYGPIMQLKF-GSFPVVVGSSVEMAEAFLKTHDALFSYRPKL-AAGKYTTF-NYSNITWSQYGPYW 127 (307)
Q Consensus 51 l~~~~~~~~~~~~~kYG~i~~~~l-g~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~-~~~~~~~~-~~~~~~~~~~G~~w 127 (307)
+..+++..+.+| ++||||+++++ |+.++|+++||++++++|.++ .|++++.. .....+.. ..+..++..+|+.|
T Consensus 35 ~~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~i~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~l~~~dg~~h 111 (417)
T 2y5n_A 35 HGLTLAGRYGEL-QETEPVSRVRPPYGEEAWLVTRYEDVRAVLGDG--RFVRGPSMTRDEPRTRPEMVKGGLLSMDPPEH 111 (417)
T ss_dssp SSCCCCHHHHHH-HHHCSEEEEECSBSCCEEEECSHHHHHHHHTCT--TEESGGGGTSCCCBSSSSCCCCSGGGCCTTHH
T ss_pred hccCchHHHHHH-HhcCCeEeeccCCCceEEEECCHHHHHHHHcCC--CcccCccccccccccCcccccccCccCCchHH
Confidence 445789999999 89999999997 889999999999999999864 47777542 11111111 01233455689999
Q ss_pred HHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCC-ceechHHHH-HHHHHHHHHHHhcCccccchhhHHHHHH
Q 043529 128 RQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGK-PIILKDNLL-DLNLEVMSRMVLGKKYTNEIVARHEFKE 205 (307)
Q Consensus 128 k~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~-~~t~~ii~~~~fG~~~~~~~~~~~~~~~ 205 (307)
+++||+++ +.|+++.++.+.+.+.++++.+++.+.+ ++ ++|+.+.+. .+++++++. +||.+.+. .+.+.+
T Consensus 112 ~~~R~~l~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~--~~~~vdl~~~~~~~~~~~vi~~-~~G~~~~~----~~~~~~ 183 (417)
T 2y5n_A 112 SRLRRLVV-KAFTARRAESLRPRAREIAHELVDQMAA--TGQPADLVAMFARQLPVRVICE-LLGVPSAD----HDRFTR 183 (417)
T ss_dssp HHHHHHHH-HHSCHHHHHHTHHHHHHHHHHHHHHHHH--HCSSEEHHHHTTTTHHHHHHHH-HHTCCGGG----HHHHHH
T ss_pred HHHHHHHh-hhcCHHHHHHHHHHHHHHHHHHHHHHHh--CCCCeeHHHHHHHHhHHHHHHH-HcCCCHHH----HHHHHH
Confidence 99999995 7899999999999999999999999985 34 899987764 699999997 69987642 223333
Q ss_pred HHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHhhhcCCCCcc
Q 043529 206 MADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKDMMDVLLQLADDPTLE 285 (307)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~ld~ll~~~~~~~~~ 285 (307)
..+.++ . .+ . .| . ++..+..+++..++.++|+++++.. ..|+++.|++...+ +
T Consensus 184 ~~~~~~----~-----~~---~-~~---~-~~~~~~~~~l~~~~~~~i~~r~~~~-------~~dll~~ll~~~~~---~ 236 (417)
T 2y5n_A 184 WSGAFL----S-----TA---E-VT---A-EEMQEAAEQAYAYMGDLIDRRRKEP-------TDDLVSALVQARDQ---Q 236 (417)
T ss_dssp HHHTTS----T-----TC---C-CC---H-HHHHHHHHHHHHHHHHHHHHHHHSC-------CSSHHHHHHHCCBT---T
T ss_pred HHHHHh----c-----cc---C-CC---H-HHHHHHHHHHHHHHHHHHHHHHhCC-------CCCHHHHHHhhhcc---C
Confidence 222111 1 00 0 11 1 2345567778888999999887531 46999999984322 3
Q ss_pred ccCchHHHHHHHHHHhhccCCC
Q 043529 286 VKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 286 ~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
..+|+++|.+++.++++|||||
T Consensus 237 ~~ls~~ei~~~~~~l~~AG~eT 258 (417)
T 2y5n_A 237 DSLSEQELLDLAIGLLVAGYES 258 (417)
T ss_dssp BCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhHHH
Confidence 4699999999999999999985
No 49
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105, oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea recticatena}
Probab=99.89 E-value=2.8e-22 Score=182.18 Aligned_cols=230 Identities=16% Similarity=0.136 Sum_probs=164.4
Q ss_pred CCCCCCCCcccccccCCCCchHHHHHHHHhhCCceEEec-CCcCEEEecCHHHHHHHHHhcCcccCCCCCcCccc-----
Q 043529 36 PPGPKPWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKF-GSFPVVVGSSVEMAEAFLKTHDALFSYRPKLAAGK----- 109 (307)
Q Consensus 36 pPgP~~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~l-g~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~~~~----- 109 (307)
.+||.. |+- ..+..+++..+.+|+ +||||+++++ |+.++|+++||++++++|.++ .|++|+......
T Consensus 9 ~~g~~~-~~~---~~~~~~p~~~~~~l~-~~Gpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~ 81 (413)
T 2z36_A 9 LAGLEL-PVE---RGCPFAPPAAYERLR-ERAPINKVRLTSGGQAWWVSGHEEARAVLADG--RFSSDKRKDGFPLFTLD 81 (413)
T ss_dssp -CCCEE-CCC---CCBTTBCCHHHHHHH-HHCSEEEEEETTSCEEEEECSHHHHHHHHHCT--TEECCTTSTTCCCSSCC
T ss_pred hccccC-CCC---cccccCchHHHHHHH-HcCCeeEeecCCCceEEEEecHHHHHHHHcCC--CcccCccccCccccccc
Confidence 477753 432 234457888999997 7999999997 889999999999999999863 688886432111
Q ss_pred -eeec---CCcceEeccCChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHHH-HHHHHHH
Q 043529 110 -YTTF---NYSNITWSQYGPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNLL-DLNLEVM 184 (307)
Q Consensus 110 -~~~~---~~~~~~~~~~G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~t~~ii 184 (307)
.... +..+.++..+|+.|+++||+++ +.|+++.++.+.+.+.++++.+++.+.+..++++|+.+.+. .++++++
T Consensus 82 ~~~~~~~~~~~~~l~~~~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~~~~~d~~~~~~~~~~~~vi 160 (413)
T 2z36_A 82 AATLQQLRSQPPLMLGMDGAEHSAARRPVI-GEFTVKRLAALRPRIQDIVDHFIDDMLATDQRPVDLVQALSLPVPSLVI 160 (413)
T ss_dssp HHHHHHHTTSCCCGGGCCHHHHHHHHHHHH-GGGSHHHHHHHHHHHHHHHHHHHHHHTTCSCSSEEHHHHTTTHHHHHHH
T ss_pred cccccccccccccccccCchHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHhhhhHHHHH
Confidence 1110 1233144568999999999995 88999999999999999999999999743256899886665 6899999
Q ss_pred HHHHhcCccccchhhHHHHHHHHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 043529 185 SRMVLGKKYTNEIVARHEFKEMADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVD 264 (307)
Q Consensus 185 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 264 (307)
+.+ ||.+.+. .+.+...... .... ..| ++..+..+.+..++.++|+++++.
T Consensus 161 ~~~-~G~~~~~----~~~~~~~~~~----~~~~----~~~-----------~~~~~~~~~~~~~~~~~i~~r~~~----- 211 (413)
T 2z36_A 161 CEL-LGVPYTD----HDFFQSRTTM----MVSR----TSM-----------EDRRRAFAELRAYIDDLITRKESE----- 211 (413)
T ss_dssp HHH-HTCCGGG----HHHHHHHHHH----TTCS----SCH-----------HHHHHHHHHHHHHHHHHHHHHHSS-----
T ss_pred HHH-hCCCHHH----HHHHHHHHHH----Hhcc----cCc-----------HHHHHHHHHHHHHHHHHHHHHHhC-----
Confidence 984 9987642 2233332221 1110 001 234456677788888889888642
Q ss_pred CCCCCCHHHHHhhhcCCCCccccCchHHHHHHHHHHhhccCCC
Q 043529 265 NYEAKDMMDVLLQLADDPTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 265 ~~~~~d~ld~ll~~~~~~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
...|+++.|++...+ +..+|++++.+++.++++|||||
T Consensus 212 --~~~dll~~ll~~~~~---~~~ls~~ei~~~~~~l~~AG~eT 249 (413)
T 2z36_A 212 --PGDDLFSRQIARQRQ---EGTLDHAGLVSLAFLLLTAGHET 249 (413)
T ss_dssp --CCSSHHHHHHHHHHH---HSCCCHHHHHHHHHHHHHHHSHH
T ss_pred --CCCCHHHHHHHhhcC---CCCCCHHHHHHHHHHHHhcchHH
Confidence 146999999974211 34699999999999999999985
No 50
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450 8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio} PDB: 3b99_A*
Probab=99.89 E-value=6.9e-24 Score=195.77 Aligned_cols=248 Identities=15% Similarity=0.064 Sum_probs=152.9
Q ss_pred cCCCCCCCCCCC-CCcccccccCCCCchHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCcC-c
Q 043529 30 RRELNLPPGPKP-WPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKLA-A 107 (307)
Q Consensus 30 ~~~~~lpPgP~~-lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~-~ 107 (307)
++..++||||++ +|++||++++..+++..+.+|+++|||||++++|+.++||++||+++++++.++. .|+.++... .
T Consensus 14 ~~~~~~pPgp~~~~P~iG~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~-~~~~~~~~~~~ 92 (475)
T 3b98_A 14 TRRRNEPPLDKGMIPWLGHALEFGKDAAKFLTRMKEKHGDIFTVRAAGLYITVLLDSNCYDAVLSDVA-SLDQTSYAQVL 92 (475)
T ss_dssp CCCTTCCCEECCSSTTTBTHHHHHHCHHHHHHHHHHHHCSEEEEEETTEEEEEECCTTTHHHHHTCTT-TEESHHHHHHH
T ss_pred ccCCCCCCCCCCCcchHHhHHHHhhCHHHHHHHHHHHhCCeEEEEECCceEEEEeCHHHHHHHHcCcc-cCCchHHHHHH
Confidence 344578999998 9999999887556899999999999999999999999999999999999997654 244333211 1
Q ss_pred cceeecCCcceEeccCChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhc----CCceechHHHHHHHHHH
Q 043529 108 GKYTTFNYSNITWSQYGPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESS----GKPIILKDNLLDLNLEV 183 (307)
Q Consensus 108 ~~~~~~~~~~~~~~~~G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~t~~i 183 (307)
..... + ...+..+|+.| |++++ +.|+++.++.+.+.+.+++..+++.+.... ...+++...+...++++
T Consensus 93 ~~~~~-g--~~~~~~~~~~~---R~~~~-~~f~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (475)
T 3b98_A 93 MKRIF-N--MILPSHNPESE---KKRAE-MHFQGASLTQLSNSMQNNLRLLMTPSEMGLKTSEWKKDGLFNLCYSLLFKT 165 (475)
T ss_dssp HHHTT-C--CCCTTCCHHHH---HHHHH-HHTSHHHHHHHHHHHHHHHHHHSSTTTTTCSSCSCEEEEHHHHHHHHHHHH
T ss_pred HHHHh-C--CCCCCCChHHH---HHHHH-HHcChhhHHHHHHHHHHHHHHHHhhcccccCCCCceeehHHHHHHHHHHHH
Confidence 11111 1 12234467776 46653 678999999999888888888877664321 11356666777777777
Q ss_pred HHHHHhcCccccchhhHHHHHHHHHHHHHhccCCccccccccccccccc-cHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 043529 184 MSRMVLGKKYTNEIVARHEFKEMADELFILGGVLDIGDMIPWLGFLDLQ-GYIKRMKVLAKKFDRLFEYELDEHNARRKG 262 (307)
Q Consensus 184 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 262 (307)
++...||.+... ...+.+..+.+... .+.+|++.+...+ ...++..+..+.+.+ .+++++.+
T Consensus 166 ~~~~~~g~~~~~----~~~~~~~~~~~~~~------~~~~p~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---- 228 (475)
T 3b98_A 166 GYLTVFGAENNN----SAALTQIYEEFRRF------DKLLPKLARTTVNKEEKQIASAAREKLWK---WLTPSGLD---- 228 (475)
T ss_dssp HHHHHHCCTTSC----HHHHHHHHHHHHHH------HHHHHHHHTTCCCHHHHHHHHHHHHHHHH---HHSCTTSC----
T ss_pred hhhheeCCcccc----chhcHHHHHHHHHH------HhhhHHHHHHhcChhhhHHHHHHHHHHHH---HHHHHHhh----
Confidence 777777754221 12222222222211 2345543221011 111222222222211 11122111
Q ss_pred CCCCCCCCHHHHHhhhcCCCCccccCchHHHHHHHHHHhhccCCC
Q 043529 263 VDNYEAKDMMDVLLQLADDPTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 263 ~~~~~~~d~ld~ll~~~~~~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
......|+++.+++...+ +..++++++. .+.++++|||||
T Consensus 229 -~~~~~~d~l~~ll~~~~~---~~~~~~~~i~-~~~~~l~ag~~T 268 (475)
T 3b98_A 229 -RKPREQSWLGSYVKQLQD---EGIDAEMQRR-AMLLQLWVTQGN 268 (475)
T ss_dssp -CCCCTTSHHHHHHHHHHH---TTCCHHHHHH-HHHHHHHHHHSS
T ss_pred -ccccccHHHHHHHHHHHH---cCCCHHHHHH-HHHHHHHHcccc
Confidence 112367999999974322 1247888998 999999999986
No 51
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin, oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A* 1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Probab=99.88 E-value=5.3e-22 Score=179.81 Aligned_cols=220 Identities=16% Similarity=0.181 Sum_probs=163.2
Q ss_pred CCCCchHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCc--C----ccc---ee-ec---CCcc
Q 043529 51 IGPLPYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKL--A----AGK---YT-TF---NYSN 117 (307)
Q Consensus 51 l~~~~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~--~----~~~---~~-~~---~~~~ 117 (307)
+..+++..+.+| ++||||+++++|+.++|+++||++++++|.++ .|++|+.. . ... .+ .. ..+.
T Consensus 12 ~~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (404)
T 1z8o_A 12 FHVDWYRTYAEL-RETAPVTPVRFLGQDAWLVTGYDEAKAALSDL--RLSSDPKKKYPGVEVEFPAYLGFPEDVRNYFAT 88 (404)
T ss_dssp GTSSHHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHHCT--TEECCTTCCCTTCCCCCGGGTTCCHHHHHHHSS
T ss_pred cccCcHHHHHHH-HhcCCeeeecCCCceEEEEcCHHHHHHHHcCC--Cccccccccccccccccccccccccchhhhccc
Confidence 345789999999 99999999999999999999999999999875 68888743 1 110 11 00 0122
Q ss_pred eEeccCChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHH-HHHHHHHHHHHHhcCccccc
Q 043529 118 ITWSQYGPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNL-LDLNLEVMSRMVLGKKYTNE 196 (307)
Q Consensus 118 ~~~~~~G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~t~~ii~~~~fG~~~~~~ 196 (307)
.++..+|+.|+++||+++ +.|+++.++.+.+.+.++++.+++.+.+ ++++|+.+.+ ..+++++++. +||.+.+..
T Consensus 89 ~l~~~~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~--~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~~ 164 (404)
T 1z8o_A 89 NMGTSDPPTHTRLRKLVS-QEFTVRRVEAMRPRVEQITAELLDEVGD--SGVVDIVDRFAHPLPIKVICE-LLGVDEKYR 164 (404)
T ss_dssp SGGGCCTTHHHHHHHHHH-TTSCHHHHHHTHHHHHHHHHHHHHTSCS--SSEEEHHHHTTTHHHHHHHHH-HTTCCGGGT
T ss_pred ccccCCCcHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHhhhh--cCCcchHHHHhHHHHHHHHHH-HhCCCHHHH
Confidence 345568999999999995 8899999999999999999999998865 5689998765 5799999998 499876432
Q ss_pred hhhHHHHHHHHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHh
Q 043529 197 IVARHEFKEMADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKDMMDVLL 276 (307)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~ld~ll 276 (307)
..+.+..+.++. . ..| . .++.....+++.+++.++|+++++.. ..|+++.|+
T Consensus 165 ----~~~~~~~~~~~~-~-------~~p--------~-~~~~~~~~~~~~~~~~~~i~~r~~~~-------~~dll~~ll 216 (404)
T 1z8o_A 165 ----GEFGRWSSEILV-M-------DPE--------R-AEQRGQAAREVVNFILDLVERRRTEP-------GDDLLSALI 216 (404)
T ss_dssp ----TTHHHHHHHHHC-C-------CGG--------G-HHHHHHHHHHHHHHHHHHHHHHHHSC-------CSSHHHHHH
T ss_pred ----HHHHHHHHHHhc-c-------CCh--------h-HHHHHHHHHHHHHHHHHHHHHHHhCC-------CCCHHHHHH
Confidence 234443333332 1 012 1 23445567778888999999887521 469999999
Q ss_pred hhcCCCCccccCchHHHHHHHHHHhhccCCC
Q 043529 277 QLADDPTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 277 ~~~~~~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
+..+++ +..+|++++.+++.++++|||||
T Consensus 217 ~~~~~~--~~~l~~~ei~~~~~~~~~AG~~T 245 (404)
T 1z8o_A 217 RVQDDD--DGRLSADELTSIALVLLLAGFEA 245 (404)
T ss_dssp HCEETT--TEECCHHHHHHHHHHHHHHHHHH
T ss_pred hhhccc--CCCCCHHHHHHHHHHHHhcchHH
Confidence 841221 34699999999999999999985
No 52
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A {Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A* 1pkf_A*
Probab=99.88 E-value=6.5e-22 Score=180.06 Aligned_cols=224 Identities=15% Similarity=0.113 Sum_probs=163.7
Q ss_pred CCCchHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCC-----cC---ccceeecCCcceEeccC
Q 043529 52 GPLPYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPK-----LA---AGKYTTFNYSNITWSQY 123 (307)
Q Consensus 52 ~~~~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~-----~~---~~~~~~~~~~~~~~~~~ 123 (307)
..+++..+.+| ++||||++ + |+.++|+++||++++++|.++. |++|+. .. ....+....+.+++..+
T Consensus 25 ~~~p~~~~~~l-~~~Gpv~~-~-~~~~~vvv~~~~~v~~vl~~~~--f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 99 (419)
T 1q5d_A 25 AEDPFPAIERL-REATPIFY-W-DEGRSWVLTRYHDVSAVFRDER--FAVSREEWESSAEYSSAIPELSDMKKYGLFGLP 99 (419)
T ss_dssp TTCCHHHHHHH-HHHCSEEE-E-TTTTEEEECSHHHHHHHHTCTT--EECCGGGSTTHHHHHHSSGGGHHHHHHSTTTSC
T ss_pred hhChHHHHHHH-HhhCCccc-c-CCCCEEEEecHHHHHHHHcCCC--ccccccccccccccccccchhhhhcccccccCC
Confidence 45789999998 78999999 6 6679999999999999998764 999872 11 11111100012344567
Q ss_pred ChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHH-HHHHHHHHHHHHhcCccccchhhHHH
Q 043529 124 GPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNL-LDLNLEVMSRMVLGKKYTNEIVARHE 202 (307)
Q Consensus 124 G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~t~~ii~~~~fG~~~~~~~~~~~~ 202 (307)
|+.|+++||+++ +.|+++.++.+.+.+.++++.+++.+.+ ++++|+...+ ..+++++++.+ ||.+.+. ...
T Consensus 100 g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~--~~~~d~~~~~~~~~~~~vi~~~-fG~~~~~----~~~ 171 (419)
T 1q5d_A 100 PEDHARVRKLVN-PSFTSRAIDLLRAEIQRTVDQLLDARSG--QEEFDVVRDYAEGIPMRAISAL-LKVPAEC----DEK 171 (419)
T ss_dssp HHHHHHHHHHHG-GGGSHHHHGGGHHHHHHHHHHHHHHHTT--SSCEETTTTTGGGSHHHHHHHH-TTCCGGG----HHH
T ss_pred chHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHH-hCCCHHH----HHH
Confidence 999999999995 8899999999999999999999999976 3479987654 78999999998 9987643 234
Q ss_pred HHHHHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC-CHHHHHhhhcCC
Q 043529 203 FKEMADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAK-DMMDVLLQLADD 281 (307)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-d~ld~ll~~~~~ 281 (307)
+.+..+.++.... ...+|+.. .. .++.....+++.+++.++|+++++.. .. |+++.|++...+
T Consensus 172 ~~~~~~~~~~~~~----~~~~P~~~----~~-~~~~~~~~~~~~~~~~~~i~~r~~~~-------~~~dll~~ll~~~~~ 235 (419)
T 1q5d_A 172 FRRFGSATARALG----VGLVPRVD----EE-TKTLVASVTEGLALLHGVLDERRRNP-------LENDVLTMLLQAEAD 235 (419)
T ss_dssp HHHHHHHHHHHTT----TTTSSCCC----SC-HHHHHHHHHHHHHHHHHHHHHHHHSC-------CSSCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcc----cccccCCh----HH-HHHHHHHHHHHHHHHHHHHHHHHhCC-------CCCCHHHHHHhhhcc
Confidence 5554444444322 12344321 11 23455667788889999999887521 35 999999984322
Q ss_pred CCccccCchHHHHHHHHHHhhccCCC
Q 043529 282 PTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 282 ~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
+..+|++++.+++.++++|||||
T Consensus 236 ---~~~l~~~ei~~~~~~l~~AG~dT 258 (419)
T 1q5d_A 236 ---GSRLSTKELVALVGAIIAAGTDT 258 (419)
T ss_dssp ---STTCCHHHHHHHHHHHHHHHSHH
T ss_pred ---CCCCCHHHHHHHHHHHHHHhhHH
Confidence 34699999999999999999985
No 53
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM; 1.60A {Mycobacterium tuberculosis}
Probab=99.88 E-value=1.8e-21 Score=175.96 Aligned_cols=217 Identities=15% Similarity=0.114 Sum_probs=160.8
Q ss_pred CCCchHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCcCccceeecCCcceEeccCChhHHHHH
Q 043529 52 GPLPYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKLAAGKYTTFNYSNITWSQYGPYWRQLR 131 (307)
Q Consensus 52 ~~~~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~~~~~~~~~~~~~~~~~~G~~wk~~R 131 (307)
..+++..+.++++ |||||++. . ++|+++||++++++|.++ ..|++|+... .... . +++++..+|+.|+++|
T Consensus 17 ~~~p~~~~~~l~~-~Gpv~~~~--~-~~vvv~~~~~v~~vl~~~-~~f~~~~~~~-~~~~--~-~~~l~~~~g~~h~~~R 87 (398)
T 2xkr_A 17 SREARAAYRWMRA-NQPVFRDR--N-GLAAASTYQAVIDAERQP-ELFSNAGGIR-PDQP--A-LPMMIDMDDPAHLLRR 87 (398)
T ss_dssp CTTHHHHHHHHHH-HCSEEECT--T-CCEEECSHHHHHHHHTCT-TTEESTTCSS-TTSC--C-CSSGGGCCTTHHHHHH
T ss_pred ccChhHHHHHHHh-cCCeeecC--C-CeEEEecHHHHHHHHhCc-ccccCccccC-Cccc--c-cccccccCchHHHHHH
Confidence 3568889999877 99998654 4 899999999999999765 3799887532 1112 1 2334556799999999
Q ss_pred HHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHH-HHHHHHHHHHHHHhcCccccchhhHHHHHHHHHHH
Q 043529 132 KICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDN-LLDLNLEVMSRMVLGKKYTNEIVARHEFKEMADEL 210 (307)
Q Consensus 132 r~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~t~~ii~~~~fG~~~~~~~~~~~~~~~~~~~~ 210 (307)
|+++ +.|+++.++.+.+.+.++++.+++.|.+ ++++|+... ...+++++|+.+ ||.+.+. ...+.+....+
T Consensus 88 ~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~--~~~~d~~~~~~~~~~~~vi~~~-fG~~~~~----~~~~~~~~~~~ 159 (398)
T 2xkr_A 88 KLVN-AGFTRKRVKDKEASIAALCDTLIDAVCE--RGECDFVRDLAAPLPMAVIGDM-LGVRPEQ----RDMFLRWSDDL 159 (398)
T ss_dssp HHHG-GGSCHHHHHTTHHHHHHHHHHHHHTTTT--TSEEEHHHHTTTHHHHHHHHHH-HTCCGGG----HHHHHHHHHHH
T ss_pred HHhh-hhhCHHHHHHHHHHHHHHHHHHHHhhhh--cCCccHHHHHHHHHHHHHHHHH-hCCCHHH----HHHHHHHHHHH
Confidence 9994 8899999999999999999999999875 347899855 567999999998 9998642 23444444444
Q ss_pred HHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHhhhcCCCCccccCch
Q 043529 211 FILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKDMMDVLLQLADDPTLEVKLER 290 (307)
Q Consensus 211 ~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~ld~ll~~~~~~~~~~~lt~ 290 (307)
+..... .++| ...++.....+++.+++.++|+++++. ...|+++.|++...+ +..+|+
T Consensus 160 ~~~~~~----~~~p--------~~~~~~~~~~~~~~~~~~~~i~~r~~~-------~~~dll~~ll~~~~~---~~~ls~ 217 (398)
T 2xkr_A 160 VTFLSS----HVSQ--------EDFQITMDAFAAYNDFTRATIAARRAD-------PTDDLVSVLVSSEVD---GERLSD 217 (398)
T ss_dssp HHHHTS----CCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHS-------CCSSHHHHHHHCCBT---TBCCCH
T ss_pred HhccCc----ccch--------hhHHHHHHHHHHHHHHHHHHHHHHHhC-------CCCCHHHHHHHhhcc---CCCCCH
Confidence 433211 1122 112344556777888899999988752 147999999984322 346999
Q ss_pred HHHHHHHHHHhhccCCC
Q 043529 291 HSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 291 ~~i~~~~~~l~~aG~~~ 307 (307)
+++++++.++++|||||
T Consensus 218 ~ei~~~~~~l~~AG~eT 234 (398)
T 2xkr_A 218 DELVMETLLILIGGDET 234 (398)
T ss_dssp HHHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHHHHhhHH
Confidence 99999999999999985
No 54
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide antibiotics, 12- and 14- carbon macrolactone monooxygenase, heme; HET: HEM; 1.92A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=99.88 E-value=9.7e-22 Score=178.47 Aligned_cols=219 Identities=16% Similarity=0.177 Sum_probs=160.4
Q ss_pred CCCCchHHHHHHHHhhCCceEEec-CCcCEEEecCHHHHHHHHHhcCcccCCCCC-cCcc--ceeecC-------C-cce
Q 043529 51 IGPLPYRSIHALSEKYGPIMQLKF-GSFPVVVGSSVEMAEAFLKTHDALFSYRPK-LAAG--KYTTFN-------Y-SNI 118 (307)
Q Consensus 51 l~~~~~~~~~~~~~kYG~i~~~~l-g~~~~Vvv~~~e~~~evl~~~~~~f~~R~~-~~~~--~~~~~~-------~-~~~ 118 (307)
+..+++..+.+| ++||||+++++ |+.++|+++||++++++|.++. |++++. .... ...... . .++
T Consensus 15 ~~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (411)
T 1gwi_A 15 FVTDLDGESARL-RAAGPLAAVELPGGVPVWAVTHHAEAKALLTDPR--LVKDINVWGAWRRGEIPADWPLIGLANPGRS 91 (411)
T ss_dssp TCSCHHHHHHHH-HHTCSEEEEEETTTEEEEEECSHHHHHHHHTCTT--EECCGGGCHHHHTTCSCTTCTTHHHHSCCSS
T ss_pred ccCChHHHHHHH-HHhCCeeeeecCCCccEEEEeCHHHHHHHHcCCc--cccCcccccccccccCCcccchhhhhccccc
Confidence 445688899999 99999999998 8899999999999999998653 555541 1000 000000 1 223
Q ss_pred EeccCChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHHH-HHHHHHHHHHHhcCccccch
Q 043529 119 TWSQYGPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNLL-DLNLEVMSRMVLGKKYTNEI 197 (307)
Q Consensus 119 ~~~~~G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~t~~ii~~~~fG~~~~~~~ 197 (307)
++..+|+.|+++||+++ +.|++++++.+.+.+.++++.+++.|.+ .++++|+.+.+. .+++++++. +||.+.+.
T Consensus 92 l~~~~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~-~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~-- 166 (411)
T 1gwi_A 92 MLTVDGAEHRRLRTLVA-QALTVRRVEHMRGRITELTDRLLDELPA-DGGVVDLKAAFAYPLPMYVVAD-LMGIEEAR-- 166 (411)
T ss_dssp GGGCCHHHHHHHHHHHT-TTSCHHHHHTTHHHHHHHHHHHHHTSCC-SCCCEEHHHHTTTHHHHHHHHH-HHTCCGGG--
T ss_pred cccCCcHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHHHHH-cCCCcchHHHHhhHHHHHHHHH-HhCCCHHH--
Confidence 45668999999999995 8899999999999999999999999873 257899988876 499999996 79987642
Q ss_pred hhHHHHHHHHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHhh
Q 043529 198 VARHEFKEMADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKDMMDVLLQ 277 (307)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~ld~ll~ 277 (307)
.+.+.+....++.. . . .. ++..+..+++.+++.++|+++++.. ..|+++.|++
T Consensus 167 --~~~~~~~~~~~~~~----~----------~---~~-~~~~~~~~~~~~~~~~~i~~r~~~~-------~~d~l~~ll~ 219 (411)
T 1gwi_A 167 --LPRLKVLFEKFFST----Q----------T---PP-EEVVATLTELASIMTDTVAAKRAAP-------GDDLTSALIQ 219 (411)
T ss_dssp --HHHHHHHHHHHHCT----T----------S---CH-HHHHHHHHHHHHHHHHHHHHHHHSC-------CSSHHHHHHH
T ss_pred --HHHHHHHHHHHhcc----C----------C---Ch-HHHHHHHHHHHHHHHHHHHHHHhCC-------CCCHHHHHHH
Confidence 23444444433321 0 0 01 2344566778888999999887521 3699999998
Q ss_pred hcCCCCccccCchHHHHHHHHHHhhccCCC
Q 043529 278 LADDPTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 278 ~~~~~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
...+ +..+|++++.+++.++++|||||
T Consensus 220 ~~~~---~~~l~~~~i~~~~~~~~~AG~dT 246 (411)
T 1gwi_A 220 ASEN---GDHLTDAEIVSTLQLMVAAGHET 246 (411)
T ss_dssp CCBT---TBCCCHHHHHHHHHHHHHHHHHH
T ss_pred hccc---CCCCCHHHHHHHHHHHHHHHhhH
Confidence 4322 34699999999999999999985
No 55
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase, metal-binding, oxidoreductase, hypothetical protein; HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB: 2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Probab=99.88 E-value=2.3e-21 Score=176.12 Aligned_cols=219 Identities=16% Similarity=0.077 Sum_probs=158.1
Q ss_pred CCchHHHHHHHHhhCCce-----EEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCcC-ccc--ee-ecCCcceEeccC
Q 043529 53 PLPYRSIHALSEKYGPIM-----QLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKLA-AGK--YT-TFNYSNITWSQY 123 (307)
Q Consensus 53 ~~~~~~~~~~~~kYG~i~-----~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~-~~~--~~-~~~~~~~~~~~~ 123 (307)
.+++..+.+| ++||||+ ++++ .++|+++||++++++|.++ ..|++|+... ... .+ ....+..++..+
T Consensus 25 ~~p~~~~~~l-~~~Gpv~~~~~~~~~~--~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (414)
T 2uuq_A 25 PNPWPMYRAL-RDHDPVHHVVPPQRPE--YDYYVLSRHADVWSAARDH-QTFSSAQGLTVNYGELEMIGLHDTPPMVMQD 100 (414)
T ss_dssp TCCHHHHHHH-HHHCSEEEECCTTCGG--GCEEEECSHHHHHHHHHCT-TTEESTTCSSSCTTHHHHHTCSSSCCGGGCC
T ss_pred cCchHHHHHH-HhcCCEEcccccccCC--CCEEEEcCHHHHHHHHcCc-hhccCCCCcccccCcccccccccccccccCC
Confidence 4688889888 4799999 8877 6899999999999999876 6799887532 121 22 101123344558
Q ss_pred ChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechH-HHHHHHHHHHHHHHhcCccccchhhHHH
Q 043529 124 GPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKD-NLLDLNLEVMSRMVLGKKYTNEIVARHE 202 (307)
Q Consensus 124 G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~t~~ii~~~~fG~~~~~~~~~~~~ 202 (307)
|+.|+++||+++ +.|+++.++.+.+.+.++++.+++.|.+. +++|+.. ....+++++++. +||.+.+. .+.
T Consensus 101 g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~~--~~vdl~~~~~~~~~~~vi~~-~~G~~~~~----~~~ 172 (414)
T 2uuq_A 101 PPVHTEFRKLVS-RGFTPRQVETVEPTVRKFVVERLEKLRAN--GGGDIVTELFKPLPSMVVAH-YLGVPEED----WTQ 172 (414)
T ss_dssp TTHHHHHHHHHH-TTSSHHHHHHHHHHHHHHHHHHHHHHHHT--TEEEHHHHTTTHHHHHHHHH-HTTCCGGG----HHH
T ss_pred chhHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHhc--CCccHHHHHHHHhHHHHHHH-HhCCCHHH----HHH
Confidence 999999999995 88999999999999999999999999863 4699974 457999999998 69987752 223
Q ss_pred HHHHHHHHHHhccCCcccccc-ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHhhhcCC
Q 043529 203 FKEMADELFILGGVLDIGDMI-PWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKDMMDVLLQLADD 281 (307)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~-P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~ld~ll~~~~~ 281 (307)
+.+..+.++.. .++ |... +..+..+++.+++.++|+++++. ...|+++.|++...
T Consensus 173 ~~~~~~~~~~~-------~~~~p~~~---------~~~~~~~~~~~~~~~~i~~r~~~-------~~~dll~~ll~~~~- 228 (414)
T 2uuq_A 173 FDGWTQAIVAA-------NAVDGATT---------GALDAVGSMMAYFTGLIERRRTE-------PADDAISHLVAAGV- 228 (414)
T ss_dssp HHHHHHHHHHH-------HHC--------------CCHHHHHHHHHHHHHHHHHHTTS-------CCSSHHHHHHHTTT-
T ss_pred HHHHHHHHHhh-------cccCCchh---------HHHHHHHHHHHHHHHHHHHHHhC-------CCCCHHHHHHhccc-
Confidence 44444433331 112 3211 12335566778888888887642 24799999998432
Q ss_pred CCccccCchHHHHHHHHHHhhccCCC
Q 043529 282 PTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 282 ~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
++++..+|++++.+++.++++|||||
T Consensus 229 ~~~~~~ls~~ei~~~~~~l~~AG~eT 254 (414)
T 2uuq_A 229 GADGDTAGTLSILAFTFTMVTGGNDT 254 (414)
T ss_dssp TCTTCHHHHHHHHHHHHHHHHHHSHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHhhHHH
Confidence 11234699999999999999999985
No 56
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB: 2z3u_A* 3a1l_A*
Probab=99.87 E-value=2.2e-21 Score=176.81 Aligned_cols=223 Identities=16% Similarity=0.153 Sum_probs=156.4
Q ss_pred CCchHHHHHHHHhhCCceEEecC--CcCEEEecCHHHHHHHHHhcCcccCCCCCc--------C-ccc---e-eecCCcc
Q 043529 53 PLPYRSIHALSEKYGPIMQLKFG--SFPVVVGSSVEMAEAFLKTHDALFSYRPKL--------A-AGK---Y-TTFNYSN 117 (307)
Q Consensus 53 ~~~~~~~~~~~~kYG~i~~~~lg--~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~--------~-~~~---~-~~~~~~~ 117 (307)
.+++..+.++. +||||+++++| +.++|+++||++++++|.++ .|++||.. . ... . +....+.
T Consensus 20 ~~p~~~~~~l~-~~Gpv~~~~~g~~~~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (425)
T 2z3t_A 20 ADPYPVYRRYR-EAAPVHRTASGPGKPDTYYVFTYDDVVRVLSNR--RLGRNARVASGDTDTAPVPIPTEHRALRTVVEN 96 (425)
T ss_dssp HCCHHHHHHHH-HHCSEEEECCCSSCCCEEEECSHHHHHHHHHCT--TEESSCCCC---------------CHHHHHHTT
T ss_pred cChHHHHHHHH-hcCCeEeccccCCCCCeEEEcCHHHHHHHHcCC--Ccccccccccccccccccccccccccccccccc
Confidence 46788888886 59999999998 78999999999999999864 79988741 0 000 0 0000113
Q ss_pred eEeccCChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHH-HHHHHHHHHHHHhcCccccc
Q 043529 118 ITWSQYGPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNL-LDLNLEVMSRMVLGKKYTNE 196 (307)
Q Consensus 118 ~~~~~~G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~t~~ii~~~~fG~~~~~~ 196 (307)
+++..+|+.|+++||+++ +.|+++.++.+.+.+.++++.+++.+.+. +++|+...+ ..+++++++.+ ||.+.+.
T Consensus 97 ~l~~~dg~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~~--g~~dl~~~~~~~~~~~vi~~~-~G~~~~~- 171 (425)
T 2z3t_A 97 WLVFLDPPHHTELRSLLT-TEFSPSIVTGLRPRIAELASALLDRLRAQ--RRPDLVEGFAAPLPILVISAL-LGIPEED- 171 (425)
T ss_dssp CGGGCCHHHHHHHHHHHH-GGGSHHHHHHHHHHHHHHHHHHHHHHTTS--SSCBHHHHTTTHHHHHHHHHH-HTCCGGG-
T ss_pred ccccCCchHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHH-hCCCHHH-
Confidence 344557999999999995 88999999999999999999999999763 378987754 68999999998 9987642
Q ss_pred hhhHHHHHHHHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHh
Q 043529 197 IVARHEFKEMADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKDMMDVLL 276 (307)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~ld~ll 276 (307)
...+.+..+.+.... +.+| ++... .++..+..+++.+++.++|+++++. ...|+++.|+
T Consensus 172 ---~~~~~~~~~~~~~~~------~~~~----~~~~~-~~~~~~~~~~~~~~~~~~i~~r~~~-------~~~dll~~ll 230 (425)
T 2z3t_A 172 ---HTWLRANAVALQEAS------TTRA----RDGRG-YARAEAASQEFTRYFRREVDRRGGD-------DRDDLLTLLV 230 (425)
T ss_dssp ---HHHHHHHHHHHHTTC------TTCC----C---H-HHHHHHHHHHHHHHHHHHHCC--------------CHHHHHH
T ss_pred ---HHHHHHHHHHHHhhc------cccC----CCHHH-HHHHHHHHHHHHHHHHHHHHHHHhC-------CCCCHHHHHH
Confidence 224444444433221 1222 11111 2344556667778888887776542 2469999999
Q ss_pred hhcCCCCccccCchHHHHHHHHHHhhccCCC
Q 043529 277 QLADDPTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 277 ~~~~~~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
+...+ +..+|++++++++.++++|||||
T Consensus 231 ~~~~~---~~~ls~~el~~~~~~l~~AG~dT 258 (425)
T 2z3t_A 231 RARDT---GSPLSVDGIVGTCVHLLTAGHET 258 (425)
T ss_dssp HHHHT---TCCCCHHHHHHHHHHHHHHTTTT
T ss_pred Hhhcc---CCCCCHHHHHHHHHHHHHhhhHH
Confidence 84322 34699999999999999999997
No 57
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12; 1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Probab=99.87 E-value=7.3e-22 Score=179.58 Aligned_cols=225 Identities=17% Similarity=0.132 Sum_probs=159.9
Q ss_pred CCCchHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCcCccceee-------cCCcceEeccCC
Q 043529 52 GPLPYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKLAAGKYTT-------FNYSNITWSQYG 124 (307)
Q Consensus 52 ~~~~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~~~~~~~-------~~~~~~~~~~~G 124 (307)
..+++..+.+| ++||||+++++| +++|+|+++++++|.+. ..+++|+......... ...+++++..+|
T Consensus 28 ~~~p~~~~~~l-r~~gpv~~~~~g---~~vv~~~~~v~~vl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dg 102 (418)
T 3r9b_A 28 RADPYPIYDRI-RRGGPLALPEAN---LAVFSSFSDCDDVLRHP-SSCSDRTKSTIFQRQLAAETQPRPQGPASFLFLDP 102 (418)
T ss_dssp TTCCHHHHHHH-HHHCCEEEGGGT---EEEECSHHHHHHHHHCT-TEECCGGGCHHHHHHHC---------CCCGGGCCT
T ss_pred ccCchHHHHHH-HhcCCEEECCCC---eEEEecHHHHHHHHcCc-ccccCcccccccccccccccccccccccchhhcCC
Confidence 46789999888 679999998887 99999999999999753 4567776432111111 011234555679
Q ss_pred hhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHH-HHHHHHHHHHHHhcCccccchhhHHHH
Q 043529 125 PYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNL-LDLNLEVMSRMVLGKKYTNEIVARHEF 203 (307)
Q Consensus 125 ~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~t~~ii~~~~fG~~~~~~~~~~~~~ 203 (307)
+.|+++||+++ +.|+++.++.+.+.+.++++.+++ +.+ +.++|+...+ ..+++++++. +||.+.+. ...+
T Consensus 103 ~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~-l~~--~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~----~~~~ 173 (418)
T 3r9b_A 103 PDHTRLRGLVS-KAFAPRVIKRLEPEITALVDQLLD-AVD--GPEFNLIDNLAYPLPVAVICR-LLGVPIED----EPKF 173 (418)
T ss_dssp THHHHHHHHHH-GGGSHHHHGGGHHHHHHHHHHHHH-TCC--SSEEEHHHHTTTHHHHHHHHH-HHTCCGGG----HHHH
T ss_pred chHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHh-hhc--cCCeehHHHHhCcCCHHHHHH-HcCCCHHH----HHHH
Confidence 99999999995 889999999999999999999999 754 4588976554 5899999999 89987653 2344
Q ss_pred HHHHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHhhhcCCCC
Q 043529 204 KEMADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKDMMDVLLQLADDPT 283 (307)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~ld~ll~~~~~~~ 283 (307)
.+....+..... .++.+.+++.. ..++..+..+.+.+++.++|+++++. ...|+++.|++...+
T Consensus 174 ~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~i~~r~~~-------~~~d~l~~ll~~~~~-- 237 (418)
T 3r9b_A 174 SRASALLAAALD------PFLALTGETSD-LFDEQMKAGMWLRDYLRALIDERRRT-------PGEDLMSGLVAVEES-- 237 (418)
T ss_dssp HHHHHHHHHTTS------CHHHHHSSCCT-THHHHHHHHHHHHHHHHHHHHHTTTS-------CCSSHHHHHHHHHHH--
T ss_pred HHHHHHHHhhcC------ccccccccCHH-HHHHHHHHHHHHHHHHHHHHHHHHhC-------CCccHHHHHHHhhhc--
Confidence 444444333221 11111122112 23455667778888888888887642 257999999974221
Q ss_pred ccccCchHHHHHHHHHHhhccCCC
Q 043529 284 LEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 284 ~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
+..+|++++++++.++++|||||
T Consensus 238 -~~~ls~~ei~~~~~~l~~AG~eT 260 (418)
T 3r9b_A 238 -GDQLTEDEIIATCNLLLIAGHET 260 (418)
T ss_dssp -SSSCCHHHHHHHHHHHHHHHHHT
T ss_pred -cCCCCHHHHHHHHHHHHHHhHHH
Confidence 34599999999999999999986
No 58
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans} SCOP: a.104.1.0 PDB: 3lxi_A*
Probab=99.87 E-value=1.7e-21 Score=177.44 Aligned_cols=221 Identities=10% Similarity=0.053 Sum_probs=160.5
Q ss_pred CCchHHHHHHHHhhC-CceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCcCccceeecCCcceEeccCChhHHHHH
Q 043529 53 PLPYRSIHALSEKYG-PIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKLAAGKYTTFNYSNITWSQYGPYWRQLR 131 (307)
Q Consensus 53 ~~~~~~~~~~~~kYG-~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~~~~~~~~~~~~~~~~~~G~~wk~~R 131 (307)
.+++..+.++.+++| ||+++..|+ ++++|+||++++++|. +...|++++.... .......+.+++..+|+.|+++|
T Consensus 38 ~dp~~~~~~lr~~~G~pv~~~~~~~-~~~vv~~~~~v~~vl~-~~~~f~~~~~~~~-~~~~~~~~~~~~~~dg~~h~~~R 114 (421)
T 3lxh_A 38 QGFHEAWKRVQQPDTPPLVWTPFTG-GHWIATRGTLIDEIYR-SPERFSSRVIWVP-REAGEAYDMVPTKLDPPEHTPYR 114 (421)
T ss_dssp GCHHHHHHHHCCTTCCSEEEESSTT-SEEEECSHHHHHHHHT-CTTTEETTCCSSS-HHHHHHCCCTTTTCCTTTHHHHH
T ss_pred cChhHHHHHHHhcCCCCeEeccCCC-CeEEEcCHHHHHHHHc-ChhhccCCcccCC-cccccccccCCccCCcHHHHHHH
Confidence 468888988877655 899999876 6999999999999994 5568998874321 11111122345567899999999
Q ss_pred HHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHH-HHHHHHHHHHHHhcCccccchhhHHHHHHHHHHH
Q 043529 132 KICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNL-LDLNLEVMSRMVLGKKYTNEIVARHEFKEMADEL 210 (307)
Q Consensus 132 r~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~t~~ii~~~~fG~~~~~~~~~~~~~~~~~~~~ 210 (307)
|+++ +.|+++.++.+.+.+.++++.+++.|.+ +.++|+...+ ..++.++++. +||.+.+. ...+.+....+
T Consensus 115 ~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~--~~~~d~~~~~~~~~~~~v~~~-~~G~~~~~----~~~~~~~~~~~ 186 (421)
T 3lxh_A 115 KAID-KGLNLAEIRKLEDQIRTIAVEIIEGFAD--RGHCEFGSEFSTVFPVRVFLA-LAGLPVED----ATKLGLLANEM 186 (421)
T ss_dssp HHHH-HHHSHHHHHTTHHHHHHHHHHHHHTTTT--TSEEEHHHHTTTTHHHHHHHH-HHTCCGGG----HHHHHHHHHHH
T ss_pred HHHh-hhcCHHHHHHHHHHHHHHHHHHHHHHhh--cCCeehHHHHHHHHHHHHHHH-HcCCCHHH----HHHHHHHHHHH
Confidence 9995 7899999999999999999999998875 3578876555 5577777776 58976532 33455544444
Q ss_pred HHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHhhhcCCCCccccCch
Q 043529 211 FILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKDMMDVLLQLADDPTLEVKLER 290 (307)
Q Consensus 211 ~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~ld~ll~~~~~~~~~~~lt~ 290 (307)
+... ..+|. . ..++..+..+++.+++.++|+++++. ...|+++.|++...+ +..+|+
T Consensus 187 ~~~~------~~~p~------~-~~~~~~~~~~~~~~~~~~~i~~r~~~-------~~~dll~~ll~~~~~---~~~l~~ 243 (421)
T 3lxh_A 187 TRPS------GNTPE------E-QGRSLEAANKGFFEYVAPIIAARRGG-------SGTDLITRILNVEID---GKPMPD 243 (421)
T ss_dssp HSCC------CSSHH------H-HHHHHHHHHHHHHHHHHHHHHHHTTC-------CCCSHHHHHHTSCBT---TBCCCH
T ss_pred hccc------cCCCc------h-hHHHHHHHHHHHHHHHHHHHHHHHhC-------CCCCHHHHHHhhhcc---CCCCCH
Confidence 3211 12221 1 12445567778888999999888652 257999999984322 346999
Q ss_pred HHHHHHHHHHhhccCCC
Q 043529 291 HSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 291 ~~i~~~~~~l~~aG~~~ 307 (307)
+++.+++.++++|||||
T Consensus 244 ~ei~~~~~~l~~AG~eT 260 (421)
T 3lxh_A 244 DRALGLVSLLLLGGLDT 260 (421)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHH
Confidence 99999999999999985
No 59
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A {Novosphingobium aromaticivorans} PDB: 3ofu_A*
Probab=99.86 E-value=7.1e-21 Score=171.84 Aligned_cols=215 Identities=9% Similarity=0.036 Sum_probs=157.8
Q ss_pred CCCchHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCcCccceeecCCcceEeccCChhHHHHH
Q 043529 52 GPLPYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKLAAGKYTTFNYSNITWSQYGPYWRQLR 131 (307)
Q Consensus 52 ~~~~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~~~~~~~~~~~~~~~~~~G~~wk~~R 131 (307)
..+++..+.+|+++ |||+++..|+ ++++++||++++++|.+ .+.|++|+..... ......+.+++..+|+.|+++|
T Consensus 23 ~~~p~~~~~~l~~~-Gpv~~~~~~~-~~~vv~~~~~v~~vl~~-~~~f~~~~~~~~~-~~~~~~~~~~~~~~g~~h~~~R 98 (396)
T 3oft_A 23 EQDYFAAWKTLLDG-PGLVWSTANG-GHWIAARGDVVRELWGD-AERLSSQCLAVTP-GLGKVMQFIPLQQDGAEHKAFR 98 (396)
T ss_dssp TTCHHHHHHGGGGS-CSEEEECSTT-SEEEECSHHHHHHHHHC-TTTEESTTCCSST-THHHHHCCTTTTCCHHHHHHHH
T ss_pred hcChHHHHHHHHhc-CCeeeecCCC-CEEEEcCHHHHHHHHcC-cccccCCcccCCC-ccccccccCccccCCcHHHHHH
Confidence 35789999999998 9999999885 69999999999999964 4689998742221 1111112345667899999999
Q ss_pred HHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHH-HHHHHHHHHHHHhcCccccchhhHHHHHHHHHHH
Q 043529 132 KICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNL-LDLNLEVMSRMVLGKKYTNEIVARHEFKEMADEL 210 (307)
Q Consensus 132 r~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~t~~ii~~~~fG~~~~~~~~~~~~~~~~~~~~ 210 (307)
|+++ +.|+++.++.+.+.+.++++.+++.|.+. .++|+...+ ..++.++++. +||.+.+. ...+.+....+
T Consensus 99 ~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~~--~~~d~~~~~~~~~~~~v~~~-~~G~~~~~----~~~~~~~~~~~ 170 (396)
T 3oft_A 99 TPVM-KGLASRFVVALEPKVQAVARKLMESLRPR--GSCDFVSDFAEILPLNIFLT-LIDVPLED----RPRLRQLGVQL 170 (396)
T ss_dssp HHHH-HHTCHHHHHHHHHHHHHHHHHHHHHHGGG--SEEEHHHHTTTTHHHHHHHH-HTTCCGGG----HHHHHHHHHHH
T ss_pred HHhh-hhhCHHHHHHHHHHHHHHHHHHHHHhhhc--CCccHHHHHHHHHHHHHHHH-HcCCCHHH----HHHHHHHHHHH
Confidence 9995 88999999999999999999999999763 468876665 4466666665 68876532 23444444333
Q ss_pred HHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHhhhcCCCCccccCch
Q 043529 211 FILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKDMMDVLLQLADDPTLEVKLER 290 (307)
Q Consensus 211 ~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~ld~ll~~~~~~~~~~~lt~ 290 (307)
+... .. ++..+..+++.+++.++|+++++. ...|+++.|++...+ +..+|+
T Consensus 171 ~~~~------------~~-------~~~~~~~~~~~~~~~~~i~~r~~~-------~~~d~l~~ll~~~~~---~~~l~~ 221 (396)
T 3oft_A 171 TRPD------------GS-------MTVEQLKQAADDYLWPFIEKRMAQ-------PGDDLFSRILSEPVG---GRPWTV 221 (396)
T ss_dssp HSCC------------SS-------CCHHHHHHHHHHHHHHHHHHHHHS-------CCSSHHHHHHTSCBT---TBCCCH
T ss_pred hCCC------------CH-------HHHHHHHHHHHHHHHHHHHHHHhC-------CCCCHHHHHHHhhcc---CCCCCH
Confidence 2110 00 112445667788889999988763 257999999984322 346999
Q ss_pred HHHHHHHHHHhhccCCC
Q 043529 291 HSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 291 ~~i~~~~~~l~~aG~~~ 307 (307)
+++++++.++++|||||
T Consensus 222 ~el~~~~~~l~~AG~dT 238 (396)
T 3oft_A 222 DEARRMCRNLLFGGLDT 238 (396)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHH
Confidence 99999999999999985
No 60
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein, vancomycin biosynthes carrier protein, oxidoreductase; HET: HEM; 2.10A {Amycolatopsis balhimycina}
Probab=99.86 E-value=1.6e-20 Score=170.54 Aligned_cols=216 Identities=12% Similarity=0.014 Sum_probs=157.9
Q ss_pred CCchHHHHHHHHhhCCceEEe-cCC-cCEEEecCHHHHHHHHHhcCcccCCCCCcCccceee--cCC-cceEeccCChhH
Q 043529 53 PLPYRSIHALSEKYGPIMQLK-FGS-FPVVVGSSVEMAEAFLKTHDALFSYRPKLAAGKYTT--FNY-SNITWSQYGPYW 127 (307)
Q Consensus 53 ~~~~~~~~~~~~kYG~i~~~~-lg~-~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~~~~~~~--~~~-~~~~~~~~G~~w 127 (307)
.+++..+.++.+ ||||+++. .|. .++++|+++++++++|. +.+.|++|+......... ... ++.++..+|+.|
T Consensus 37 ~dp~~~~~~lr~-~gpV~~~~~~g~~~~~~vv~~~~~v~~vl~-~~~~fs~~~~~~~~~~~~~~~~~~~~~l~~~dg~~h 114 (415)
T 3mgx_A 37 LERHARWRELAA-EDAMVWSDPGSSPSGFWSVFSHRACAAVLA-PSAPLTSEYGMMIGFDRDHPDNSGGRMMVVSEHEQH 114 (415)
T ss_dssp TTHHHHHHHHHH-HTCCEEECSSSSSSCEEEECSHHHHHHHSC-TTSSEECTTCSSTTCCSSSCCTTTTTSGGGCCHHHH
T ss_pred CChhHHHHHHHh-cCCEeeccCCCCcCCEEEEecHHHHHHHHh-ChhhhcCCccccccccccccccccCCCccccCcHHH
Confidence 468888988876 99999997 563 79999999999999995 445799887543322110 011 344566789999
Q ss_pred HHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHH-HHHHHHHHHHHHhcCccccchhhHHHHHHH
Q 043529 128 RQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNL-LDLNLEVMSRMVLGKKYTNEIVARHEFKEM 206 (307)
Q Consensus 128 k~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~t~~ii~~~~fG~~~~~~~~~~~~~~~~ 206 (307)
+++||+++ +.|++++++.+.+.+.++++.+++.+.+ ++++|+.+.+ ..+++++|+. +||.+.+ ....+.+.
T Consensus 115 ~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~--~~~~dl~~~~~~~~~~~vi~~-l~G~~~~----~~~~~~~~ 186 (415)
T 3mgx_A 115 RKLRKLVG-PLLSRAAARKLAERVRIEVGDVLGRVLD--GEVCDAATAIGPRIPAAVVCE-ILGVPAE----DEDMLIDL 186 (415)
T ss_dssp HHHHHHHG-GGSSHHHHHHSHHHHHHHHHHHTTTSSS--SSCEESTTTTTTHHHHHHHHH-HHTCCGG----GHHHHHHH
T ss_pred HHHHHHhH-hhhCHHHHHHHHHHHHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHH-HcCCCHH----HHHHHHHH
Confidence 99999985 8899999999999999999999988865 3479998887 5699999998 5897543 23344444
Q ss_pred HHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHhhhcCCCCccc
Q 043529 207 ADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKDMMDVLLQLADDPTLEV 286 (307)
Q Consensus 207 ~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~ld~ll~~~~~~~~~~ 286 (307)
.+.++... ...+.| ... .+..+++.+++.++|+++++. ...|+++.|++..
T Consensus 187 ~~~~~~~~----~~~~~~------~~~-----~~~~~~l~~~~~~~i~~rr~~-------~~~dll~~ll~~~------- 237 (415)
T 3mgx_A 187 TNHAFGGE----DELFDG------MTP-----RQAHTEILVYFDELITARRKE-------PGDDLVSTLVTDD------- 237 (415)
T ss_dssp HHHHTSCC----C----C------CCH-----HHHHHHHHHHHHHHHHHHHHS-------CCSSHHHHHHHCT-------
T ss_pred HHHHHccc----Ccccch------HHH-----HHHHHHHHHHHHHHHHHHHhC-------CCCCHHHHHHhCC-------
Confidence 44333211 111111 111 135667788888999988753 1479999999831
Q ss_pred cCchHHHHHHHHHHhhccCCC
Q 043529 287 KLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 287 ~lt~~~i~~~~~~l~~aG~~~ 307 (307)
.+|++++++++.++++|||||
T Consensus 238 ~ls~~el~~~~~~ll~AG~eT 258 (415)
T 3mgx_A 238 DLTIDDVLLNCDNVLIGGNET 258 (415)
T ss_dssp TSCHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhhhHH
Confidence 589999999999999999997
No 61
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A {Streptomyces natalensis} PDB: 2x9p_A*
Probab=99.85 E-value=3.3e-20 Score=167.95 Aligned_cols=211 Identities=14% Similarity=0.113 Sum_probs=156.6
Q ss_pred CCCchHHHHHHHHhhCCceEEec-CCcCEEEecCHHHHHHHHHhcCcccCCCCCcC-ccceeecCCcce-EeccCC----
Q 043529 52 GPLPYRSIHALSEKYGPIMQLKF-GSFPVVVGSSVEMAEAFLKTHDALFSYRPKLA-AGKYTTFNYSNI-TWSQYG---- 124 (307)
Q Consensus 52 ~~~~~~~~~~~~~kYG~i~~~~l-g~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~-~~~~~~~~~~~~-~~~~~G---- 124 (307)
..+++..+.+| ++||||+++++ |+.++|+|+||++++++|.++ .|++++... ....... ..+. ++..+|
T Consensus 25 ~~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~-~~~~~l~~~~g~~~~ 100 (404)
T 2xbk_A 25 MLKLSPLLRAL-QDRGPIHRVRTPAGDEAWLVTRHAELKQLLHDE--RIGRTHPDPPSAAQYVR-SPFLDLLISDADAES 100 (404)
T ss_dssp TTBCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHTTCT--TEESBCSSGGGSCCSSC-CHHHHTTCBCSCHHH
T ss_pred ccCccHHHHHH-HhhCCEeeeccCCCceEEEEcCHHHHHHHHcCC--CCCCCccccccCCcccc-cccccceeeCCCCCC
Confidence 45688899999 89999999997 889999999999999999864 487776432 1111111 1231 445579
Q ss_pred --hhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHH-HHHHHHHHHHHHhcCccccchhhHH
Q 043529 125 --PYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNL-LDLNLEVMSRMVLGKKYTNEIVARH 201 (307)
Q Consensus 125 --~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~t~~ii~~~~fG~~~~~~~~~~~ 201 (307)
+.|+++||+++ +.|+++.++.+.+.+.++++.+++.|.+. |+++|+.+.+ ..+++++++. +||.+.+. .+
T Consensus 101 ~~~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~~-g~~~d~~~~~~~~~~~~vi~~-~~G~~~~~----~~ 173 (404)
T 2xbk_A 101 GRRQHAETRRLLT-PLFSARRVLEMQPKVEEAADTLLDAFIAQ-GPPGDLHGELTVPFALTVLCE-VIGVPPQR----RA 173 (404)
T ss_dssp HHHHHHHHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHHHHHT-CSSEEHHHHTHHHHHHHHHHH-HHTCCGGG----HH
T ss_pred CCchHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeeHHHHHHHHHHHHHHHH-HhCCCHHH----HH
Confidence 99999999995 88999999999999999999999999853 5689998766 4689999997 79987642 22
Q ss_pred HHHHHHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHhhhcCC
Q 043529 202 EFKEMADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKDMMDVLLQLADD 281 (307)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~ld~ll~~~~~ 281 (307)
.+.+....++.. . .| + +..+..+++.+++.++|+++++.. ..|+++.| + +
T Consensus 174 ~~~~~~~~~~~~------~--~~--------p---~~~~~~~~~~~~~~~~i~~r~~~~-------~~dll~~l-~---~ 223 (404)
T 2xbk_A 174 ELTTLLAGIAKL------D--DR--------E---GAVRAQDDLFGYVAGLVEHKRAEP-------GPDIISRL-N---D 223 (404)
T ss_dssp HHHHHHHHHTBS------S--CH--------H---HHHHHHHHHHHHHHHHHHHHHHSC-------CSSHHHHH-H---S
T ss_pred HHHHHHHHHHhc------c--Cc--------H---HHHHHHHHHHHHHHHHHHHHHhCC-------CCCHHHHh-h---c
Confidence 344433332210 0 01 1 234456677888888998887531 36899998 3 1
Q ss_pred CCccccCchHHHHHHHHHHhhccCCC
Q 043529 282 PTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 282 ~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
+ .+|++++++++.++++|||||
T Consensus 224 ---~-~ls~~ei~~~~~~l~~AG~dT 245 (404)
T 2xbk_A 224 ---G-ELTEDRVAHLAMGLLFAGLDS 245 (404)
T ss_dssp ---S-SCCHHHHHHHHHHHHHHTTHH
T ss_pred ---C-CCCHHHHHHHHHHHHHhchHH
Confidence 3 699999999999999999985
No 62
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid biosynthesis, heme, iron, synthesis, lyase, metal-binding, oxylipin biosynthesis; HET: HEM T25; 1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A* 3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Probab=99.85 E-value=3.2e-21 Score=178.95 Aligned_cols=162 Identities=11% Similarity=0.039 Sum_probs=121.5
Q ss_pred CCCCCCCCCCCCCcccccccC-----CCCchHHHHHHHHhhCC-ceEEecCCcCE-------EEecCHHHHHHHHHhcC-
Q 043529 31 RELNLPPGPKPWPIIGNLNLI-----GPLPYRSIHALSEKYGP-IMQLKFGSFPV-------VVGSSVEMAEAFLKTHD- 96 (307)
Q Consensus 31 ~~~~lpPgP~~lPilGn~~~l-----~~~~~~~~~~~~~kYG~-i~~~~lg~~~~-------Vvv~~~e~~~evl~~~~- 96 (307)
.+.+.||||+|||+|||++++ ..+++..+.++.+|||+ ||++++|+.++ |++++++..+.++....
T Consensus 25 ~p~~~pPGp~g~P~iG~~~~~~~~~~~~~~~~f~~~~~~kyG~~Vf~~~l~~~~~vv~~p~~v~~~~~~~~~~l~~~~~v 104 (495)
T 3dsk_A 25 LPIRNIPGNYGLPIVGPIKDRWDYFYDQGAEEFFKSRIRKYNSTVYRVNMPPGAFIAENPQVVALLDGKSFPVLFDVDKV 104 (495)
T ss_dssp CCBCCCCCCCCSTTHHHHHHHHHHHTTSCHHHHHHHHHHHHTCSEEEEECSCCTTTCSCCEEEEECSTTTGGGGGCTTTE
T ss_pred CCCCCCCCCCCCCccchHHHHHHHHHhcCcHHHHHHHHHHhCCceEeecCCCCCCccCCCCEEEEeCCcceeeecccccc
Confidence 345679999999999998654 46789999999999999 99999999888 66677766655553211
Q ss_pred ---cccCC-CCCcCccceeecCCcceEeccCChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhc--CCce
Q 043529 97 ---ALFSY-RPKLAAGKYTTFNYSNITWSQYGPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESS--GKPI 170 (307)
Q Consensus 97 ---~~f~~-R~~~~~~~~~~~~~~~~~~~~~G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~--~~~~ 170 (307)
+.|.. .|.. ...+........+..+|+.|+++|+++. +.|+..+ +.+.+.+++++..+++.|.+.. ++++
T Consensus 105 ~k~~~~~~~~~~~--~~l~g~~~~~~~~~~~g~~h~~~R~~~~-~~f~~~~-~~~~~~i~~~~~~ll~~~~~~~~~~~~v 180 (495)
T 3dsk_A 105 EKKDLLTGTYMPS--TELTGGYRILSYLDPSEPKHEKLKNLLF-FLLKSSR-NRIFPEFQATYSELFDSLEKELSLKGKA 180 (495)
T ss_dssp ECSSCTTSSSCCC--GGGGTTCCCGGGCCTTSHHHHHHHHHHH-HHHHHTT-TTHHHHHHHHHHHHHHHHHHHHHHHSSE
T ss_pred cccccccccCCCC--ccccCCCcceeeeCCCchHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 22222 2321 2222211123344568999999999996 6677654 7899999999999999997632 5689
Q ss_pred echHHHHHHHHHHHHHHHhcCccccc
Q 043529 171 ILKDNLLDLNLEVMSRMVLGKKYTNE 196 (307)
Q Consensus 171 ~~~~~~~~~t~~ii~~~~fG~~~~~~ 196 (307)
|+.+.+.++++++++.++||.+....
T Consensus 181 dl~~~~~~~~~~~i~~~~~G~~~~~~ 206 (495)
T 3dsk_A 181 DFGGSSDGTAFNFLARAFYGTNPADT 206 (495)
T ss_dssp ESHHHHHHHHHHHHHHHHHSCCGGGS
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcchh
Confidence 99999999999999999999887643
No 63
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein, oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB: 3nc5_A* 3nc6_A* 3nc7_A*
Probab=99.85 E-value=3.6e-21 Score=176.24 Aligned_cols=219 Identities=12% Similarity=0.095 Sum_probs=147.4
Q ss_pred CchHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCcCccceeecCCcceEeccCChhHHHHHHH
Q 043529 54 LPYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKLAAGKYTTFNYSNITWSQYGPYWRQLRKI 133 (307)
Q Consensus 54 ~~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~~~~~~~~~~~~~~~~~~G~~wk~~Rr~ 133 (307)
+++..+.++ ++||||+++..++ +++|++|++++++|.++. .|++++......... + .+.++..+|+.|+++||+
T Consensus 54 ~p~~~~~~l-r~~gpv~~~~~~~--~~vv~~~~~v~~vl~~~~-~f~~~~~~~~~~~~~-~-~~~l~~~dg~~h~~~Rr~ 127 (441)
T 3nc3_A 54 NPYAYFSQL-REEDPVHYEESID--SYFISRYHDVRYILQHPD-IFTTKSLVERAEPVM-R-GPVLAQMHGKEHSAKRRI 127 (441)
T ss_dssp CGGGTHHHH-HHHCSEEEETTTT--EEEECCHHHHHHHHHCTT-TEECCCTTSCCCCSC-C--------------CCHHH
T ss_pred ChHHHHHHH-HhcCCEEEeCCCC--EEEEcCHHHHHHHhcCcc-ccccccccccccccc-C-CCccccCCcHHHHHHHHH
Confidence 567777665 6899999987765 899999999999998664 499887544333222 1 234556689999999999
Q ss_pred HHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHH-HHHHHHHHHHHHHhcCccccchhhHHHHHHHHHHHHH
Q 043529 134 CLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDN-LLDLNLEVMSRMVLGKKYTNEIVARHEFKEMADELFI 212 (307)
Q Consensus 134 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~t~~ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~ 212 (307)
++ +.|+++.++.+.+.+.++++.+++.|.+ ++++|+... ...++.++++. +||.+.+. ...+.+....++.
T Consensus 128 ~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~--~~~~dl~~~~~~~~~~~vi~~-l~G~~~~~----~~~~~~~~~~~~~ 199 (441)
T 3nc3_A 128 VV-RSFIGDALDHLSPLIKQNAENLLAPYLE--RGKSDLVNDFGKTFAVCVTMD-MLGLDKRD----HEKISEWHSGVAD 199 (441)
T ss_dssp HH-HHHHHTHHHHHHHHHHHHHHHHHTTTTT--TTEEECCCCCHHHHHHHHHHH-HTTCCGGG----HHHHHHHHHHHHH
T ss_pred HH-hhcCHHHHHHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHHH-HcCCCHHH----HHHHHHHHHHHHH
Confidence 95 8899999999999999999999988865 457887544 45689999998 58987642 2345554444444
Q ss_pred hccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHhhhcCCCCccccCchHH
Q 043529 213 LGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKDMMDVLLQLADDPTLEVKLERHS 292 (307)
Q Consensus 213 ~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~ld~ll~~~~~~~~~~~lt~~~ 292 (307)
...... .+ .....+.....+++.+++.++|+++++. ...|+++.|++...+ +..+|+++
T Consensus 200 ~~~~~~----~~-------~~~~~~~~~~~~~l~~~~~~~i~~rr~~-------~~~Dll~~Ll~~~~~---~~~ls~~e 258 (441)
T 3nc3_A 200 FITSIS----QS-------PEARAHSLWCSEQLSQYLMPVIKERRVN-------PGSDLISILCTSEYE---GMALSDKD 258 (441)
T ss_dssp HHHCSC----CC-------HHHHHHHHHHHHHHHHHHHHHHHHHTTS-------CCSSHHHHHCC---------CCCHHH
T ss_pred hccccc----CC-------hHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCCCHHHHHHHhhcc---CCCCCHHH
Confidence 322110 01 0112334556778888899999888642 246999999984322 34699999
Q ss_pred HHHHHHHHhhccCCC
Q 043529 293 LKAVTQNSCRYGHGD 307 (307)
Q Consensus 293 i~~~~~~l~~aG~~~ 307 (307)
|++++..+++|||||
T Consensus 259 l~~~~~~ll~AG~eT 273 (441)
T 3nc3_A 259 ILALILNVLLAATEP 273 (441)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHH
Confidence 999999999999985
No 64
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450 vancomycin, oxidoreductase; HET: HEM; 1.70A {Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A* 1lgf_A*
Probab=99.85 E-value=1.3e-20 Score=170.24 Aligned_cols=209 Identities=14% Similarity=0.168 Sum_probs=148.0
Q ss_pred HHHHHhhCCceEEecC-Cc---CEEEecCHHHHHHHHHhcCcccCCCCC------cCccceee-cCCcceEeccCChhHH
Q 043529 60 HALSEKYGPIMQLKFG-SF---PVVVGSSVEMAEAFLKTHDALFSYRPK------LAAGKYTT-FNYSNITWSQYGPYWR 128 (307)
Q Consensus 60 ~~~~~kYG~i~~~~lg-~~---~~Vvv~~~e~~~evl~~~~~~f~~R~~------~~~~~~~~-~~~~~~~~~~~G~~wk 128 (307)
.+|+++ |||++++++ +. ++|+|+||++++++|+++ ..|++||. ........ ...+..++..+|+.|+
T Consensus 20 ~~l~~~-Gpv~~~~~~~g~~~~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~ 97 (398)
T 1lfk_A 20 DELLAA-GALTRVTIGSGADAETHWMATAHAVVRQVMGDH-QQFSTRRRWDPRDEIGGKGIFRPRELVGNLMDYDPPEHT 97 (398)
T ss_dssp HHHHTS-CSEEEEC------CCCEEEECSHHHHHHHHHCT-TTEEECTTCCC-------------CCTTCGGGCCTTHHH
T ss_pred HHHHhc-CCccccccCCCCcccceEEEecHHHHHHHHhhC-cccccccccccccccCCcccccccccccCccccCCHHHH
Confidence 346666 999999875 45 899999999999999433 35888875 11111111 0112334456799999
Q ss_pred HHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHHHH-HHHHHHHHHHhcCccccchhhHHHHHHHH
Q 043529 129 QLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNLLD-LNLEVMSRMVLGKKYTNEIVARHEFKEMA 207 (307)
Q Consensus 129 ~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~t~~ii~~~~fG~~~~~~~~~~~~~~~~~ 207 (307)
++||+++ +.|+++.++.+.+.+.++++.+++.+.+. ++++|+.+.+.. ++.++++. +||.+.+. .+.+.+..
T Consensus 98 ~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~----~~~~~~~~ 170 (398)
T 1lfk_A 98 RLRRKLT-PGFTLRKMQRMAPYIEQIVNDRLDEMERA-GSPADLIAFVADKVPGAVLCE-LVGVPRDD----RDMFMKLC 170 (398)
T ss_dssp HHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHHHHHH-CSSEEHHHHTTTTHHHHHHHH-HHTCCGGG----HHHHHHHH
T ss_pred HHHHHHH-hhhCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCccHHHHHHHHHHHHHHHH-HcCCCHHH----HHHHHHHH
Confidence 9999995 78999999999999999999999999753 578999999887 88999987 69987642 22343333
Q ss_pred HHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHhhhcCCCCcccc
Q 043529 208 DELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKDMMDVLLQLADDPTLEVK 287 (307)
Q Consensus 208 ~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~ld~ll~~~~~~~~~~~ 287 (307)
..++ . . + .. .++.....+++.+++.++|+++++.. ..|+++.|++.. +..
T Consensus 171 ~~~~----~-----~-~-------~~-~~~~~~~~~~~~~~~~~~i~~r~~~~-------~~dll~~ll~~~-----~~~ 220 (398)
T 1lfk_A 171 HGHL----D-----A-S-------LS-QKRRAALGDKFSRYLLAMIARERKEP-------GEGMIGAVVAEY-----GDD 220 (398)
T ss_dssp HHTT----C-----T-T-------SC-HHHHHHHHHHHHHHHHHHHHHHHHSC-------CSSHHHHHHHHH-----GGG
T ss_pred HHHH----h-----c-c-------cc-hHHHHHHHHHHHHHHHHHHHHHHhCC-------CCCHHHHHHHhc-----CCC
Confidence 2211 0 0 0 01 13345567778888999999887631 469999999843 125
Q ss_pred CchHHHHHHHHHHhhccCCC
Q 043529 288 LERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 288 lt~~~i~~~~~~l~~aG~~~ 307 (307)
+|++++.+++.++++|||||
T Consensus 221 l~~~el~~~~~~l~~AG~dT 240 (398)
T 1lfk_A 221 ATDEELRGFCVQVMLAGDDN 240 (398)
T ss_dssp SCHHHHHHHHHHHHHHTSHH
T ss_pred CCHHHHHHHHHHHHHHhccH
Confidence 99999999999999999985
No 65
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta binding protein; HET: HEM; 2.47A {Micromonospora echinospora}
Probab=99.84 E-value=6.8e-21 Score=172.07 Aligned_cols=218 Identities=17% Similarity=0.131 Sum_probs=156.1
Q ss_pred CCchHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCcCcc------ceeecCCcceEeccCChh
Q 043529 53 PLPYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKLAAG------KYTTFNYSNITWSQYGPY 126 (307)
Q Consensus 53 ~~~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~~~------~~~~~~~~~~~~~~~G~~ 126 (307)
.+++..+.++ ++||||++ + | .++|+|+||++++++|.+ ..|++++..... ..+....+..++..+|+.
T Consensus 13 ~~p~~~~~~l-~~yGpv~~-~-g-~~~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~ 86 (397)
T 3buj_A 13 RDPYPSYHWL-LRHDPVHR-G-A-HRVWYVSRFADVRAVLGD--ERFARTGIRRFWTDLVGPGLLAEIVGDIILFQDEPD 86 (397)
T ss_dssp HCCHHHHHHH-HHHCSEEE-C-G-GGCEEECSHHHHHHHHTC--TTEESHHHHHHHHHHHCSSHHHHHHTTCGGGCCTTH
T ss_pred cCchHHHHHH-HhcCCeee-C-C-CCeEEEcCHHHHHHHHcC--CCcccCcccccccccccccccccccccccccCCchh
Confidence 3578788766 68999999 7 5 789999999999999975 368776431100 011110022344557999
Q ss_pred HHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHH-HHHHHHHHHHHHHhcCccccchhhHHHHHH
Q 043529 127 WRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDN-LLDLNLEVMSRMVLGKKYTNEIVARHEFKE 205 (307)
Q Consensus 127 wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~t~~ii~~~~fG~~~~~~~~~~~~~~~ 205 (307)
|+++||+++ +.|+++.++.+.+.+.++++.+++.+.+ ++++|+... ...+++++++.+ ||.+.+. .+.+.+
T Consensus 87 h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~--~~~~dl~~~~~~~~~~~vi~~~-~G~~~~~----~~~~~~ 158 (397)
T 3buj_A 87 HGRLRGVVG-PAFSPSALRRLEPVIAGTVDDLLRPALA--RGAMDVVDELAYPLALRAVLGL-LGLPAAD----WGAVGR 158 (397)
T ss_dssp HHHHHHHHG-GGSSTTTTGGGHHHHHHHHHHHHHHHHT--TTEEEHHHHTHHHHHHHHHHHH-HTCCGGG----HHHHHH
T ss_pred HHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHHHhh--cCCeehHHHHHHHhHHHHHHHH-hCCCHHH----HHHHHH
Confidence 999999995 8899999999999999999999999985 458998755 468999999998 9987643 234444
Q ss_pred HHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHhhhcCCCCcc
Q 043529 206 MADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKDMMDVLLQLADDPTLE 285 (307)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~ld~ll~~~~~~~~~ 285 (307)
..+.+...... . ++ +...++..+..+++.+++.++|+++++.. ..|+++.|++...+ +
T Consensus 159 ~~~~~~~~~~~--------~---~~-~~~~~~~~~~~~~~~~~~~~~i~~r~~~~-------~~dll~~ll~~~~~---~ 216 (397)
T 3buj_A 159 WSRDVGRTLDR--------G---AS-AEDMRRGHAAIAEFADYVERALARRRREG-------GEDLLALMLDAHDR---G 216 (397)
T ss_dssp HHHHHHGGGCS--------S---CC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCSHHHHHHHHHHT---T
T ss_pred HHHHHHhhcCC--------C---CC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------CCCHHHHHHHhhhc---C
Confidence 44444332110 0 11 11123445567778888999999887632 46999999984322 2
Q ss_pred ccCchHHHHHHHHHHhhccCCC
Q 043529 286 VKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 286 ~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
. +|++++.+++.++++|||||
T Consensus 217 ~-ls~~ei~~~~~~~~~AG~~T 237 (397)
T 3buj_A 217 L-MSRNEIVSTVVTFIFTGHET 237 (397)
T ss_dssp S-SCHHHHHHHHHHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHHHHcCchH
Confidence 3 99999999999999999985
No 66
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A {Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Probab=99.84 E-value=2.6e-20 Score=169.00 Aligned_cols=215 Identities=13% Similarity=0.053 Sum_probs=156.7
Q ss_pred CCCchHHHHHHHHhhCCceEEecCC--cCEEEecCHHHHHHHHHhcCcccCCCCCcCc----cceeecCC-cceEeccCC
Q 043529 52 GPLPYRSIHALSEKYGPIMQLKFGS--FPVVVGSSVEMAEAFLKTHDALFSYRPKLAA----GKYTTFNY-SNITWSQYG 124 (307)
Q Consensus 52 ~~~~~~~~~~~~~kYG~i~~~~lg~--~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~~----~~~~~~~~-~~~~~~~~G 124 (307)
+.++|..+.++. +||||+++++++ .+++++++|++++++|.+ ..|++++.... ...+. +. +..++..+|
T Consensus 26 g~~p~~~~~~l~-~~Gpv~~~~~~~g~~~~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~~~~~~~-~~~~~~l~~~dg 101 (411)
T 2dkk_A 26 GPEFDPVLAELM-REGPLTRVRLPHGEGWAWLATRYDDVKAITND--PRFGRAEVTQRQITRLAPHF-KPRPGSLAFADQ 101 (411)
T ss_dssp SSCCCHHHHHHH-TTCSEEEEECSBSBSCEEEECSHHHHHHHTTC--TTEESGGGGGSCBCBSSSCC-CCCTTCSTTCCT
T ss_pred cccccHHHHHHH-hcCCeEeeecCCCceeEEEEcCHHHHHHHHcC--CCcccCCCCCCCccccccch-hccccccccCCc
Confidence 456788898886 899999999864 789999999999999975 36877654211 11111 11 233456689
Q ss_pred hhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHHH-HHHHHHHHHHHhcCccccchhhHHHH
Q 043529 125 PYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNLL-DLNLEVMSRMVLGKKYTNEIVARHEF 203 (307)
Q Consensus 125 ~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~t~~ii~~~~fG~~~~~~~~~~~~~ 203 (307)
+.|+++||+++ +.|++++++.+.+.+.+.++.+++.|.+. |+++|+.+.+. .+++++|+. +||.+.+. ...+
T Consensus 102 ~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~-g~~~dl~~~~~~~~~~~vi~~-l~G~~~~~----~~~~ 174 (411)
T 2dkk_A 102 PDHNRLRRAVA-GAFTVGATKRLRPRAQEILDGLVDGILAE-GPPADLVERVLEPFPIAVVSE-VMGVPAAD----RERV 174 (411)
T ss_dssp THHHHHHHHHG-GGSSHHHHHHHHHHHHHHHHHHHHHHHHH-CSCEEHHHHTTTHHHHHHHHH-HHTCCSSH----HHHH
T ss_pred hHHHHHHHHhh-HhhCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHH-HhCCCHHH----HHHH
Confidence 99999999995 88999999999999999999999999864 55899987775 699999998 59987642 1233
Q ss_pred HHHHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHhhhcCCCC
Q 043529 204 KEMADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKDMMDVLLQLADDPT 283 (307)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~ld~ll~~~~~~~ 283 (307)
.+ +...+.. ..+ .+ ++..+..+.+.+++.++|+++++. ...|+++.|++. .
T Consensus 175 ~~----~~~~~~~-----~~~--------~~-~~~~~~~~~l~~~~~~~i~~r~~~-------~~~dll~~ll~~-~--- 225 (411)
T 2dkk_A 175 HS----WTRQIIS-----TSG--------GA-EAAERAKRGLYGWITETVRARAGS-------EGGDVYSMLGAA-V--- 225 (411)
T ss_dssp HH----HHGGGCS-----SCS--------CS-HHHHHHHHHHHHHHHHHHHTTTTC-------CSSCHHHHHHHH-H---
T ss_pred HH----HHHHHHh-----ccc--------hH-HHHHHHHHHHHHHHHHHHHHHHhC-------CCCCHHHHHHHh-c---
Confidence 32 2222111 111 11 233456667778888888776531 246999999984 2
Q ss_pred ccccCchHHHHHHHHHHhhccCCC
Q 043529 284 LEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 284 ~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
.+..+|++++.+++.++++|| ||
T Consensus 226 ~~~~ls~~el~~~~~~l~~AG-eT 248 (411)
T 2dkk_A 226 GRGEVGETEAVGLAGPLQIGG-EA 248 (411)
T ss_dssp HTTSSCTTSHHHHHHHHHHTH-HH
T ss_pred CCCCCCHHHHHHHHHHHHHhh-HH
Confidence 134699999999999999999 75
No 67
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450 fold, structural genomics, PSI, protein structure initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A* 3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Probab=99.81 E-value=7.5e-20 Score=165.20 Aligned_cols=215 Identities=16% Similarity=0.119 Sum_probs=150.2
Q ss_pred CCCchHHHHHHHHhhCCceEEec-CCcCEEEecCHHHHHHHHHhcCcccC-C-CCCc--Cccc--eeecCCcceEeccCC
Q 043529 52 GPLPYRSIHALSEKYGPIMQLKF-GSFPVVVGSSVEMAEAFLKTHDALFS-Y-RPKL--AAGK--YTTFNYSNITWSQYG 124 (307)
Q Consensus 52 ~~~~~~~~~~~~~kYG~i~~~~l-g~~~~Vvv~~~e~~~evl~~~~~~f~-~-R~~~--~~~~--~~~~~~~~~~~~~~G 124 (307)
..+++..+.+| ++||||+++++ |+.++|+++||++++++|.++ .|+ + ++.. .... .+....+..++..
T Consensus 15 ~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 89 (396)
T 1n40_A 15 GDRIPDAVAEL-RTREPIRKVRTITGAEAWLVSSYALCTQVLEDR--RFSMKETAAAGAPRLNALTVPPEVVNNMGNI-- 89 (396)
T ss_dssp SSSCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHHTCT--TEESGGGGSTTCCCSSCCSSCGGGGGHHHHH--
T ss_pred ccCccHHHHHH-HHhCCeeEeecCCCceEEEEecHHHHHHHHhCC--CcccccCccccccccccccCCchhhhhhhhH--
Confidence 45688999999 99999999998 788999999999999999865 477 5 5532 1111 1111011223322
Q ss_pred hhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHHH-HHHHHHHHHHHhcCccccchhhHHHH
Q 043529 125 PYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNLL-DLNLEVMSRMVLGKKYTNEIVARHEF 203 (307)
Q Consensus 125 ~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~t~~ii~~~~fG~~~~~~~~~~~~~ 203 (307)
.|+++||+++ +.|+++ ++.+.+.+.++++.+++.+.+. ++++|+.+.+. .+++++++. +||.+.+. ..++
T Consensus 90 -~h~~~R~~~~-~~fs~~-~~~~~~~i~~~~~~l~~~l~~~-~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~----~~~~ 160 (396)
T 1n40_A 90 -ADAGLRKAVM-KAITPK-APGLEQFLRDTANSLLDNLITE-GAPADLRNDFADPLATALHCK-VLGIPQED----GPKL 160 (396)
T ss_dssp -HHTTCHHHHH-HHTSSC-STTHHHHHHHHHHHHHHHHHHH-CSCEETTTTTHHHHHHHHHHH-HHTCCGGG----HHHH
T ss_pred -HHHHHHHHHH-HhhChH-HHHhHHHHHHHHHHHHHHHHhc-CCCccHHHHHHHHhHHHHHHH-HhCCChhh----HHHH
Confidence 9999999996 778888 9999999999999999999864 56899986664 799999998 89987642 2344
Q ss_pred HHHHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHhhhcCCCC
Q 043529 204 KEMADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKDMMDVLLQLADDPT 283 (307)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~ld~ll~~~~~~~ 283 (307)
.+..+.++.... ..| . ++..+..+++ +++.++|+ + .+ ...|+++.|++...++
T Consensus 161 ~~~~~~~~~~~~------~~p---------~-~~~~~~~~~~-~~~~~~i~------~--~~-~~~dll~~ll~~~~~~- 213 (396)
T 1n40_A 161 FRSLSIAFMSSA------DPI---------P-AAKINWDRDI-EYMAGILE------N--PN-ITTGLMGELSRLRKDP- 213 (396)
T ss_dssp HHTHHHHTBCCS------SCC---------H-HHHHHHHHHH-HHHHHHHH------C--TT-CCSHHHHHHHHHHTSG-
T ss_pred HHHHHHHhcccc------CCC---------H-HHHHHHHHHH-HHHHHHHh------C--CC-CCCCHHHHHHHhhccc-
Confidence 444333322110 011 1 2333445555 66766666 1 11 2579999999843121
Q ss_pred ccccCchHHHHHHHHHHhhccCCC
Q 043529 284 LEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 284 ~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
.+..+|++++.+++.++++|||||
T Consensus 214 ~~~~l~~~~i~~~~~~~~~AG~dT 237 (396)
T 1n40_A 214 AYSHVSDELFATIGVTFFGAGVIS 237 (396)
T ss_dssp GGTTSCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHhhhh
Confidence 134699999999999999999985
No 68
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase, oxidoreductase; HET: HEM; 2.00A {Sphingopyxis macrogoltabida}
Probab=99.81 E-value=1.4e-18 Score=158.38 Aligned_cols=222 Identities=10% Similarity=0.032 Sum_probs=154.5
Q ss_pred CCchHHHHHHHHhhCCceEEec-CCcCEEEecCHHHHHHHHHhcCcccCCCCC---cCccc-----eeecCCcceEeccC
Q 043529 53 PLPYRSIHALSEKYGPIMQLKF-GSFPVVVGSSVEMAEAFLKTHDALFSYRPK---LAAGK-----YTTFNYSNITWSQY 123 (307)
Q Consensus 53 ~~~~~~~~~~~~kYG~i~~~~l-g~~~~Vvv~~~e~~~evl~~~~~~f~~R~~---~~~~~-----~~~~~~~~~~~~~~ 123 (307)
.+++..+.++.++ |||+++.+ ++.++++|+++++++++|.+. ..|++++. ..... .......+.++..+
T Consensus 38 ~~p~~~~~~lr~~-gpv~~~~~~~~~~~~vvt~~~~v~~vl~d~-~~fs~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 115 (426)
T 3rwl_A 38 DSVGEYFKRLRKD-DPVHYCADSAFGPYWSITKYNDIMHVDTNH-DIFSSDAGYGGIIIDDGIQKGGDGGLDLPNFIAMD 115 (426)
T ss_dssp TCHHHHHHHHHHH-CSEEEESCCTTCSEEEECSHHHHHHHHHCT-TTEECCGGGTCSSSSCCC-------CCCCCGGGCC
T ss_pred CCccHHHHHHHhc-CCeeeccCCCCCCEEEEcCHHHHHHHHcCC-cccccccccCCCCcccccccccccccccCcccccC
Confidence 4588889888765 99999987 567899999999999999755 56887652 11111 00111123456678
Q ss_pred ChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHH-HHHHHHHHHHHHhcCccccchhhHHH
Q 043529 124 GPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNL-LDLNLEVMSRMVLGKKYTNEIVARHE 202 (307)
Q Consensus 124 G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~t~~ii~~~~fG~~~~~~~~~~~~ 202 (307)
|+.|+++||+++ +.|+++.++.+.+.+.+.+..+++.+.. ++++|+...+ ..++.++++. +||...+.. +.
T Consensus 116 g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~--~~~~dl~~~~~~~~~~~vi~~-l~G~~~~~~----~~ 187 (426)
T 3rwl_A 116 RPRHDEQRKAVS-PIVAPANLAALEGTIRERVSKTLDGLPV--GEEFDWVDRVSIEITTQMLAT-LFDFPFEER----RK 187 (426)
T ss_dssp TTHHHHHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHTSCS--SSCEEHHHHTHHHHHHHHHHH-HHTCCGGGT----HH
T ss_pred chHHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHhhc--CCCcchHHHHHHHHHHHHHHH-HcCCCHHHH----HH
Confidence 999999999985 8899999999999999999999988854 5789977776 5678888776 899764322 23
Q ss_pred HHHHHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHhhhcCCC
Q 043529 203 FKEMADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKDMMDVLLQLADDP 282 (307)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~ld~ll~~~~~~ 282 (307)
+.+..+.+... . .|. .. ..+ ++.....+++..++.++|++++.. ....|+++.|++.. +
T Consensus 188 ~~~~~~~~~~~------~--~~~--~~--~~~-~~~~~~~~~~~~~~~~~i~~r~~~------~~~~dll~~ll~~~-~- 246 (426)
T 3rwl_A 188 LTRWSDVTTAA------P--GGG--VV--ESW-DQRKTELLECAAYFQVLWNERVNK------DPGNDLISMLAHSP-A- 246 (426)
T ss_dssp HHHHHHHHTCC------T--TSS--SC--SSH-HHHHHHHHHHHHHHHHHHHHHHTS------CCCSSHHHHHHHCG-G-
T ss_pred HHHHHHHHHhc------c--Ccc--cc--ccH-HHHHHHHHHHHHHHHHHHHHHhhc------CCCCCHHHHHHhcc-c-
Confidence 33322211110 0 010 11 111 233445677888888888887421 13579999999842 2
Q ss_pred CccccCchHHHHHHHHHHhhccCCC
Q 043529 283 TLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 283 ~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
+..+|++++++++.++++|||||
T Consensus 247 --~~~ls~~el~~~~~~l~~AG~eT 269 (426)
T 3rwl_A 247 --TRNMTPEEYLGNVLLLIVGGNDT 269 (426)
T ss_dssp --GGGCCHHHHHHHHHHHHHHHHHH
T ss_pred --CCCCCHHHHHHHHHHHHHHHHHH
Confidence 22489999999999999999985
No 69
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX, bioremediation, electron transport; HET: HEM; 1.49A {Rhodococcus} PDB: 2wiv_A*
Probab=99.80 E-value=1.8e-18 Score=156.04 Aligned_cols=217 Identities=19% Similarity=0.149 Sum_probs=154.1
Q ss_pred CchHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCcCccceeecCCcceEeccCChhHHHHHHH
Q 043529 54 LPYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKLAAGKYTTFNYSNITWSQYGPYWRQLRKI 133 (307)
Q Consensus 54 ~~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~~~~~~~~~~~~~~~~~~G~~wk~~Rr~ 133 (307)
+++..+.++.+ +|||+++..| .+++++++.+++++.+. .|+.++........ ...++.++..+|+.|+++||+
T Consensus 21 dp~~~~~~lr~-~~pv~~~~~g---~~~v~~~~~v~~~l~d~--~fs~~~~~~~~~~~-~~~~~~l~~~dg~~h~~~R~~ 93 (394)
T 2wiy_A 21 NPYPWYRRLQQ-DHPVHKLEDG---TYLVSRYADVSHFAKLP--IMSVEPGWADAGPW-AVASDTALGSDPPHHTVLRRQ 93 (394)
T ss_dssp CCHHHHHHHHH-HCSEEECTTS---CEEECCHHHHHHHTTST--TEECHHHHHTCGGG-GGGGGSGGGCCTTHHHHHHHH
T ss_pred CccHHHHHHHh-cCCeEEecCC---eEEEcCHHHHHHHHcCC--Cccccccccccccc-hhcccccccCCchHHHHHHHH
Confidence 57778877755 6899987654 79999999999999643 57765421111111 111234566789999999999
Q ss_pred HHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHHHHHHHh
Q 043529 134 CLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNLLDLNLEVMSRMVLGKKYTNEIVARHEFKEMADELFIL 213 (307)
Q Consensus 134 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~t~~ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~ 213 (307)
++ +.|++++++.+.+.+.+.+..+++.+.+ ++++|+.+.+..++.++++..+||.+.+. ...+.+.+...+..
T Consensus 94 ~~-~~fs~~~~~~~~~~i~~~~~~l~~~~~~--~~~~d~~~~~~~~~~~vi~~~~~G~~~~~----~~~~~~~~~~~~~~ 166 (394)
T 2wiy_A 94 TN-KWFTPKLVDGWVRTTRELVGDLLDGVEA--GQVIEARRDLAVVPTHVTMARVLQLPEDD----ADAVMEAMFEAMLM 166 (394)
T ss_dssp HH-TTCSHHHHHHHTHHHHHHHHHHHHTCCT--TCCEEHHHHHTHHHHHHHHHHHHTCCCCC----HHHHHHHHHHHHGG
T ss_pred HH-hccCHHHHHHHHHHHHHHHHHHHHHHhc--cCCeeHHHHHHhhhHHHHHHHHcCCCHhH----HHHHHHHHHHHHHh
Confidence 85 8899999999999999999999888764 57899999999999999999999987542 22343333222111
Q ss_pred ccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHhhhcCCCCccccCchHHH
Q 043529 214 GGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKDMMDVLLQLADDPTLEVKLERHSL 293 (307)
Q Consensus 214 ~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~ld~ll~~~~~~~~~~~lt~~~i 293 (307)
....|.. ....+.....+.+.+++.++|+++++.. ..|+++.|++...+ + .+|++++
T Consensus 167 ------~~~~p~~------~~~~~~~~~~~~l~~~~~~~i~~rr~~~-------~~dll~~Ll~~~~~---~-~ls~~el 223 (394)
T 2wiy_A 167 ------QSAEPAD------GDVDRAAVAFGYLSARVAEMLEDKRVNP-------GDGLADSLLDAARA---G-EITESEA 223 (394)
T ss_dssp ------GSSSCCT------THHHHHHHHHHHHHHHHHHHHHHHHHSC-------CSSHHHHHHHHHHT---T-SSCHHHH
T ss_pred ------ccCCccc------hHHHHHHHHHHHHHHHHHHHHHHhhcCC-------CCcHHHHHHHhhhc---C-CCCHHHH
Confidence 0112211 1123334456677888888898887521 36899999974322 2 4999999
Q ss_pred HHHHHHHhhccCCC
Q 043529 294 KAVTQNSCRYGHGD 307 (307)
Q Consensus 294 ~~~~~~l~~aG~~~ 307 (307)
++++.++++|||||
T Consensus 224 ~~~~~~l~~AG~eT 237 (394)
T 2wiy_A 224 IATILVFYAVGHMA 237 (394)
T ss_dssp HHHHHHHHHHTTTH
T ss_pred HHHHHHHHHhhhhh
Confidence 99999999999996
No 70
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Probab=99.79 E-value=6.8e-19 Score=157.34 Aligned_cols=203 Identities=16% Similarity=0.103 Sum_probs=145.6
Q ss_pred chHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCcC--cc-----c-eeecCC--cceEeccCC
Q 043529 55 PYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKLA--AG-----K-YTTFNY--SNITWSQYG 124 (307)
Q Consensus 55 ~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~--~~-----~-~~~~~~--~~~~~~~~G 124 (307)
|+..+.++ ++||||++++ | ++++++|++++++|.++ +.|++++... .. . .+. +. ..+++..+|
T Consensus 1 p~~~~~~l-r~~gpv~~~~-g---~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~dg 73 (367)
T 3b4x_A 1 MYDWFKQM-RKESPVYYDG-K---VWNLFKYEDCKMVLNDH-KRFSSNLTGYNDKLEMLRSGKVFF-DIPTRYTMLTSDP 73 (367)
T ss_dssp CHHHHHHH-HHHCSEEECS-S---SEEECSHHHHHHHHHCT-TTEECCCSSTTTTHHHHHHTCCCC-CCGGGSSGGGCCT
T ss_pred CCHHHHHH-HHcCCceeeC-C---EEEEecHHHHHHHHcCc-hhhccCcccccccccccccccchh-hcccccccccCCc
Confidence 35567777 5799999988 4 89999999999999865 4798885321 11 1 221 21 133445579
Q ss_pred hhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHH-HHHHHHHHHHHHhcCccccchhhHHHH
Q 043529 125 PYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNL-LDLNLEVMSRMVLGKKYTNEIVARHEF 203 (307)
Q Consensus 125 ~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~t~~ii~~~~fG~~~~~~~~~~~~~ 203 (307)
+.|+++||+++ +.|+++.++. +.+.++++.+++.+. | ++|+.+.+ ..+++++++. +||.+ +. ...+
T Consensus 74 ~~h~~~R~~~~-~~fs~~~l~~--~~i~~~~~~l~~~l~---g-~~d~~~~~~~~~~~~vi~~-~~G~~-~~----~~~~ 140 (367)
T 3b4x_A 74 PLHDELRNLTA-DAFNPSNLPV--DFVREVTVKLLSELD---E-EFDVIESFAIPLPILVISK-MLGIN-PD----VKKV 140 (367)
T ss_dssp THHHHHHHTTG-GGGSGGGSCH--HHHHHHHHHHHHTCC---S-EEEHHHHTTTHHHHHHHHH-HHTCC-CC----HHHH
T ss_pred hhHHHHHHHHH-HhcCHhhhcc--hHHHHHHHHHHHhcc---C-CcchHHHHHHhhHHHHHHH-HcCCC-Cc----HHHH
Confidence 99999999995 7899888876 888999999998876 3 49998765 7899999999 79998 42 2344
Q ss_pred HHHHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHhhhcCCCC
Q 043529 204 KEMADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKDMMDVLLQLADDPT 283 (307)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~ld~ll~~~~~~~ 283 (307)
.+..+.++.... ..|... ++. +..+.+.+++.++|+++++. ...|+++.|++.
T Consensus 141 ~~~~~~~~~~~~------~~p~~~--------~~~-~~~~~~~~~~~~~i~~r~~~-------~~~dll~~ll~~----- 193 (367)
T 3b4x_A 141 KDWSDLVALRLG------RADEIF--------SIG-RKYLELISFSKKELDSRKGK-------EIVDLTGKIANS----- 193 (367)
T ss_dssp HHHHHHHHTTTT------STTGGG--------CCC-HHHHHHHHHHHHHHHHHTTT-------CCSSHHHHHHTS-----
T ss_pred HHHHHHHHhccC------CChhhH--------HHH-HHHHHHHHHHHHHHHHHhcC-------CCCCHHHHHHhc-----
Confidence 444444433211 123211 111 34566777888888887642 246999999982
Q ss_pred ccccCchHHHHHHHHHHhhccCCC
Q 043529 284 LEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 284 ~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
.+|++++.+++.++++|||||
T Consensus 194 ---~ls~~el~~~~~~l~~AG~eT 214 (367)
T 3b4x_A 194 ---NLSELEKEGYFILLMIAGNET 214 (367)
T ss_dssp ---SSCHHHHHHHHHHHHHTTTHH
T ss_pred ---cCCHHHHHHHHHHHHHhhhHH
Confidence 489999999999999999985
No 71
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty acid biosynthesis, heme, iron, lipid synthesis, lyase, metal-binding; HET: HEM; 1.80A {Parthenium argentatum} PDB: 3dam_A* 3dbm_A*
Probab=99.79 E-value=4.9e-19 Score=163.14 Aligned_cols=161 Identities=12% Similarity=0.065 Sum_probs=115.4
Q ss_pred CCCCCCCCCCCCcccccccC-----CC-CchHHHHHHHHhhCC-ceEEecCCcCE-------EEecCHHHHHHHHHh---
Q 043529 32 ELNLPPGPKPWPIIGNLNLI-----GP-LPYRSIHALSEKYGP-IMQLKFGSFPV-------VVGSSVEMAEAFLKT--- 94 (307)
Q Consensus 32 ~~~lpPgP~~lPilGn~~~l-----~~-~~~~~~~~~~~kYG~-i~~~~lg~~~~-------Vvv~~~e~~~evl~~--- 94 (307)
+.+.||||+|||++|++.++ .. +++..+.++.+|||| ||++++++.++ |++++.+..+.++..
T Consensus 7 Pl~~iPGp~g~P~iG~~~~~~~~~~~~g~~~~~~~~~~~kyG~~vf~~~~~~~~~v~~~~~~v~~~~~~~~~~~~~~~~~ 86 (473)
T 3dan_A 7 PLREIPGSYGIPFFQPIKDRLEYFYGTGGRDEYFRSRMQKYQSTVFRANMPPGPFVSSNPKVIVLLDAKSFPILFDVSKV 86 (473)
T ss_dssp CBCCCCCCCCSTTHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSEEEEECTTCTTTCSCCEEEEECSTTTGGGGGCTTTE
T ss_pred CCCCCCCCCCCcchhhHHHHHHHHHhhcCchHHHHhHHHHhCCeEEEecCCCCCccccCCceEEeecccccceecCCcce
Confidence 44558999999999998753 35 688899999999999 99999975543 334444433333321
Q ss_pred -cCcccCCCCCcCccceeecCCcceEeccCChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhc--CCcee
Q 043529 95 -HDALFSYRPKLAAGKYTTFNYSNITWSQYGPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESS--GKPII 171 (307)
Q Consensus 95 -~~~~f~~R~~~~~~~~~~~~~~~~~~~~~G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~--~~~~~ 171 (307)
+...+..+.. .....+.......++..+|+.|+++||+++ +.|+++ ++.+.+.++++++.+++.|.+.. ++++|
T Consensus 87 ~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~h~~~R~~~~-~~f~~~-~~~~~~~i~~~~~~ll~~~~~~~~~~~~vd 163 (473)
T 3dan_A 87 EKKDLFTGTYM-PSTKLTGGYRVLSYLDPSEPRHAQLKNLLF-FMLKNS-SNRVIPQFETTYTELFEGLEAELAKNGKAA 163 (473)
T ss_dssp ECSSCTTSSSC-CCGGGGTTSCCGGGCCTTSHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHSCEE
T ss_pred ecccccccccc-CCccccCCCcceeeeCCCcHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 1122222211 111112111123345568999999999995 778884 88999999999999999997632 46899
Q ss_pred chHHHHHHHHHHHHHHHhcCcccc
Q 043529 172 LKDNLLDLNLEVMSRMVLGKKYTN 195 (307)
Q Consensus 172 ~~~~~~~~t~~ii~~~~fG~~~~~ 195 (307)
+.+.+.++++++++.++||.+...
T Consensus 164 l~~~~~~~~~~~i~~~~~G~~~~~ 187 (473)
T 3dan_A 164 FNDVGEQAAFRFLGRAYFNSNPEE 187 (473)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCGGG
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCc
Confidence 999999999999999999998765
No 72
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A {Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Probab=99.78 E-value=1e-19 Score=165.37 Aligned_cols=218 Identities=11% Similarity=0.069 Sum_probs=152.6
Q ss_pred CCchHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCcC------ccceeecCCcceEeccCChh
Q 043529 53 PLPYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKLA------AGKYTTFNYSNITWSQYGPY 126 (307)
Q Consensus 53 ~~~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~------~~~~~~~~~~~~~~~~~G~~ 126 (307)
.+|+.. ++.++|||++++++|... ++|+++++++++|.++. |+..+... .........+++++..+|+.
T Consensus 33 ~~P~~~--~~lr~~gpv~~~~~g~~~-~vv~~~~~v~~vL~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dg~~ 107 (416)
T 3p3o_A 33 NFSWDS--PEVAEAREKSWIARTPLA-LLVLRYAEADQLARDKR--LISGFRGLVDMVGTPEGPVRDFMVDFLQSLDGAD 107 (416)
T ss_dssp TCCTTS--HHHHHHHHHCSEEECSSS-EEECSHHHHHHHHHCTT--EECSHHHHHHHHTCCSSHHHHHHHHSGGGCCHHH
T ss_pred cCCchH--HHHHHhCCccccccCCCc-eEEeCHHHHHHHHcCcc--cccCCccccccccccccchhhhhcCccccCCchH
Confidence 356655 566789999999998777 99999999999998653 43321100 00001111134566778999
Q ss_pred HHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHH-HHHHHHHHHHHHhcCccccchhhHHHHHH
Q 043529 127 WRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNL-LDLNLEVMSRMVLGKKYTNEIVARHEFKE 205 (307)
Q Consensus 127 wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~t~~ii~~~~fG~~~~~~~~~~~~~~~ 205 (307)
|+++||+++ +.|++++++.+.+.+.++++.+++.+ . ++++|+...+ ..++++++|. +||.+.+. .+.+.+
T Consensus 108 h~~~Rr~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l-~--~g~~d~~~~~~~~~~~~vi~~-l~G~~~~~----~~~~~~ 178 (416)
T 3p3o_A 108 HRRLRGLAT-HPFTPRRITAVQPFVRSTVEQLIDKL-P--QGDFDFVQHFPHPLPALVMCQ-LLGFPLED----YDTVGR 178 (416)
T ss_dssp HHHHHHTTC-GGGSHHHHHHHHHHHHHHHHHHHHTC-C--SSSEEHHHHTTTHHHHHHHHH-HHTCCGGG----HHHHHH
T ss_pred HHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHhh-c--cCCccHHHHHHHHHHHHHHHH-HhCCCHHH----HHHHHH
Confidence 999999995 88999999999999999999999999 4 3468965555 5699999998 58976532 223333
Q ss_pred HHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHhhhcCCCCcc
Q 043529 206 MADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKDMMDVLLQLADDPTLE 285 (307)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~ld~ll~~~~~~~~~ 285 (307)
....++.. +++. . .....++..+..+++.+++.++|+++++. ...|+++.|++...+ +
T Consensus 179 ~~~~~~~~---------~~~~-~--~~~~~~~~~~~~~~l~~~~~~~i~~rr~~-------~~~dll~~ll~~~~~---~ 236 (416)
T 3p3o_A 179 LSIETNLG---------LALS-N--DQDILVKVEQGLGRMFDYLVAAIEKRKVE-------PGDDLTSDIVRAFHD---G 236 (416)
T ss_dssp HHHTTCGG---------GTTC-S--CHHHHHHHHHHHHHHHHHHHHHHHHHHHS-------CCSSHHHHHHHHHHT---T
T ss_pred HHHHHHhh---------cccc-c--chhhHHHHHHHHHHHHHHHHHHHHHHHhC-------CCccHHHHHHHhhcc---C
Confidence 32221111 1110 0 11223445667778889999999998763 257999999984332 2
Q ss_pred ccCchHHHHHHHHHHhhccCCC
Q 043529 286 VKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 286 ~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
.+|++++++++.++++|||||
T Consensus 237 -~ls~~el~~~~~~l~~AG~eT 257 (416)
T 3p3o_A 237 -VLDDYELRTLVATVLVAGYET 257 (416)
T ss_dssp -SSCHHHHHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHhhccH
Confidence 699999999999999999985
No 73
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus} PDB: 2rfc_A*
Probab=99.78 E-value=5.4e-19 Score=156.56 Aligned_cols=190 Identities=15% Similarity=0.109 Sum_probs=132.2
Q ss_pred HhhCCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCcCccceeecCCcceEeccCChhHHHHHHHHHHhhcCHHH
Q 043529 64 EKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKLAAGKYTTFNYSNITWSQYGPYWRQLRKICLMELFTAKR 143 (307)
Q Consensus 64 ~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~~~~~~~~~~~~~~~~~~G~~wk~~Rr~~~~~~~~~~~ 143 (307)
++||||+++ | +++++||++++++|.++ +.|++|+....... + +..++..+|+.|+++||+++ +.|+++.
T Consensus 2 r~~gpv~~~--g---~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~---~-~~~l~~~~g~~~~~~R~~~~-~~fs~~~ 70 (343)
T 2rfb_A 2 RLNDPVHYD--G---AWHVYKYSDVKHVLMND-KIFSSNPGNRYSNA---G-GISFITMDNPEHKEFRDISA-PYFLPSK 70 (343)
T ss_dssp -CCCCEEET--T---EEEECSHHHHHHHHHCT-TTEESSCSSCCC-------CCGGGGCCHHHHHHHHHHHH-HHHSHHH
T ss_pred CCcCCeeee--C---eEEEcCHHHHHHHHhCh-hhcccCCcCCCCCc---c-ccccccCCchHHHHHHHHhh-hhcCHHH
Confidence 579999986 3 99999999999999875 47998873211111 2 23344568999999999995 7899999
Q ss_pred HHhhHHHHHHHHHHHHHHHHhhcCCceechHHH-HHHHHHHHHHHHhcCccccchhhHHHHHHHHHHHHHhccCCccccc
Q 043529 144 LNSYEYIRVEETMLFLRNLYESSGKPIILKDNL-LDLNLEVMSRMVLGKKYTNEIVARHEFKEMADELFILGGVLDIGDM 222 (307)
Q Consensus 144 l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~t~~ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (307)
++.+.+.+.++++.+++.|. ++|+.+.+ ..+++++++.+ ||.+.+. ...+.+....++...
T Consensus 71 l~~~~~~i~~~~~~l~~~l~-----~~d~~~~~~~~~~~~vi~~~-~G~~~~~----~~~~~~~~~~~~~~~-------- 132 (343)
T 2rfb_A 71 INDYKDFIEETSNDLIKNID-----NKDIISEYAVRLPVNIISKI-LGIPDSD----MPLFKLWSDYIIGNK-------- 132 (343)
T ss_dssp HGGGHHHHHHHHHHHHTTCT-----TSCHHHHTTTHHHHHHHHHH-HTCCGGG----HHHHHHHHHHHHTSC--------
T ss_pred HHHHHHHHHHHHHHHHHhcc-----ccCHHHHHhhhhhHHHHHHH-cCCCHHH----HHHHHHHHHHHhhcc--------
Confidence 99999999999999987775 57888765 89999999998 9987642 234444444333211
Q ss_pred cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHhhhcCCCCccccCchHHHHHHHHHHhh
Q 043529 223 IPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKDMMDVLLQLADDPTLEVKLERHSLKAVTQNSCR 302 (307)
Q Consensus 223 ~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~ld~ll~~~~~~~~~~~lt~~~i~~~~~~l~~ 302 (307)
.|.+. .+ ++. +..+++.+++.++| ..| ++.|++...+ +..+|++++.+++.++++
T Consensus 133 ~p~~~-----~~-~~~-~~~~~~~~~~~~~i--------------~~d-l~~ll~~~~~---~~~l~~~ei~~~~~~~~~ 187 (343)
T 2rfb_A 133 RDENF-----NY-VNN-RMVSRLLEIFKSDS--------------HGI-INVLAGSSLK---NRKLTMDEKIKYIMLLII 187 (343)
T ss_dssp CSSHH-----HH-HHH-HHHHHHHHHHHSCC--------------SSH-HHHHHTCBCS---SSBCCHHHHHHHHHHHHH
T ss_pred Ccchh-----hH-HHH-HHHHHHHHHHHHHH--------------hcc-HHHHHhhhcC---CCCCCHHHHHHHHHHHHH
Confidence 13211 11 122 33334443333222 357 9999974222 346999999999999999
Q ss_pred ccCCC
Q 043529 303 YGHGD 307 (307)
Q Consensus 303 aG~~~ 307 (307)
|||||
T Consensus 188 AG~dT 192 (343)
T 2rfb_A 188 GGNET 192 (343)
T ss_dssp HHHHH
T ss_pred HhhHH
Confidence 99985
No 74
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.50A {Sulfolobus solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A* 1io9_A* 1io8_A*
Probab=99.78 E-value=8.9e-19 Score=156.63 Aligned_cols=203 Identities=17% Similarity=0.194 Sum_probs=142.6
Q ss_pred chHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCC-----cC-c-cce--eecCCcceEeccCCh
Q 043529 55 PYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPK-----LA-A-GKY--TTFNYSNITWSQYGP 125 (307)
Q Consensus 55 ~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~-----~~-~-~~~--~~~~~~~~~~~~~G~ 125 (307)
|+..+.++ ++||||+++ | ++++++|+++++++|.++ +.|++|+. .. . ... +....++.++..+|+
T Consensus 1 p~~~~~~l-r~~Gpv~~~--g--~~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~ 74 (368)
T 1io7_A 1 MYDWFSEM-RKKDPVYYD--G--NIWQVFSYRYTKEVLNNF-SKFSSDLTGYHERLEDLRNGKIRFDIPTRYTMLTSDPP 74 (368)
T ss_dssp CHHHHHHH-HHHCSEEEC--S--SCEEECSHHHHHHHHHCT-TTEECCCSSHHHHHHHHTTTCCCCSCGGGSSGGGCCTT
T ss_pred CCHHHHHH-HhcCCeEeE--C--CEEEEecHHHHHHHHcCc-ccccccccccccccccccccccccccccccccccCCCh
Confidence 35667777 689999987 5 699999999999999864 47999874 11 0 011 111011334556799
Q ss_pred hHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHH-HHHHHHHHHHHHhcCccccchhhHHHHH
Q 043529 126 YWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNL-LDLNLEVMSRMVLGKKYTNEIVARHEFK 204 (307)
Q Consensus 126 ~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~t~~ii~~~~fG~~~~~~~~~~~~~~ 204 (307)
.|+++||+++ +.|+++.++.+.+.+.++++.+++.+ + ++++|+.+.+ ..+++++++.+ ||.+.+. .+.+.
T Consensus 75 ~h~~~R~~~~-~~f~~~~~~~~~~~i~~~~~~l~~~l-~--~g~~d~~~~~~~~~~~~vi~~~-~G~~~~~----~~~~~ 145 (368)
T 1io7_A 75 LHDELRSMSA-DIFSPQKLQTLETFIRETTRSLLDSI-D--PREDDIVKKLAVPLPIIVISKI-LGLPIED----KEKFK 145 (368)
T ss_dssp HHHHHHGGGT-TTTCHHHHHHHHHHHHHHHHHHHHTC-C--TTSEEHHHHTTTHHHHHHHHHH-HTCCGGG----HHHHH
T ss_pred HHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHHHHHHh-h--cCCccHHHHHHHHHHHHHHHHH-hCCCHHH----HHHHH
Confidence 9999999995 88999999999999999999999999 4 3479998876 68999999999 9987642 12333
Q ss_pred HHHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHhhhcCCCCc
Q 043529 205 EMADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKDMMDVLLQLADDPTL 284 (307)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~ld~ll~~~~~~~~ 284 (307)
+... ..... .. .|. .+ ++..+..+.+..++.++| + ...|+++.|++.
T Consensus 146 ~~~~----~~~~~-~~--~p~-------~~-~~~~~~~~~~~~~~~~~i-------~-----~~~d~l~~ll~~------ 192 (368)
T 1io7_A 146 EWSD----LVAFR-LG--KPG-------EI-FELGKKYLELIGYVKDHL-------N-----SGTEVVSRVVNS------ 192 (368)
T ss_dssp HHGG----GCTTS-CC--CTT-------CH-HHHHHHHHHHHHHHHHHT-------T-----SSCHHHHHHHTS------
T ss_pred HHHH----HHHhc-cC--ChH-------HH-HHHHHHHHHHHHHHHHHh-------C-----CCCCHHHHHHhc------
Confidence 2211 11110 00 121 11 233445556666666555 1 146899999972
Q ss_pred cccCchHHHHHHHHHHhhccCCC
Q 043529 285 EVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 285 ~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
.+|++++.+++.++++|||||
T Consensus 193 --~l~~~ei~~~~~~l~~AG~dT 213 (368)
T 1io7_A 193 --NLSDIEKLGYIILLLIAGNET 213 (368)
T ss_dssp --SCCHHHHHHHHHHHHHTTHHH
T ss_pred --cCCHHHHHHHHHHHHHhhhHH
Confidence 489999999999999999985
No 75
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A {Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A* 4dnz_A*
Probab=99.65 E-value=2.7e-15 Score=136.04 Aligned_cols=232 Identities=13% Similarity=0.075 Sum_probs=140.0
Q ss_pred CCCCCccccccc---CCCCchHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCcCcc---ceee
Q 043529 39 PKPWPIIGNLNL---IGPLPYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKLAAG---KYTT 112 (307)
Q Consensus 39 P~~lPilGn~~~---l~~~~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~~~---~~~~ 112 (307)
+.++|.+|--+. +..+|+..+.++ +++|||+ |.+..++.+|++++++++||.+. ..|+++...... ....
T Consensus 17 ~~~~P~~~~dp~~~~~~~dP~~~~~~l-R~~gPV~--~~~~~~~~~vt~~~~v~~vl~d~-~~fs~~~~~~~~~~~~~~~ 92 (412)
T 4dnj_A 17 GAGVPHLGIDPFALDYFADPYPEQETL-REAGPVV--YLDKWNVYGVARYAEVYAVLNDP-LTFCSSRGVGLSDFKKEKP 92 (412)
T ss_dssp STTSCEECCCTTSHHHHHSCHHHHHHH-HHHCSSE--EETTTTEEEECSHHHHHHHHTCT-TTEESTTCSSSSCTTTSCC
T ss_pred CCCCCccCCCCCCHHHHhCcHHHHHHH-HhcCCEE--EECCCCEEEECCHHHHHHHHcCC-ccccCCCcccccccccccc
Confidence 346888873221 234688888776 4589997 45777899999999999999643 466654321111 1111
Q ss_pred cCCcceEeccCChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceec-hHHHHHHHHHHHHHHHhcC
Q 043529 113 FNYSNITWSQYGPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIIL-KDNLLDLNLEVMSRMVLGK 191 (307)
Q Consensus 113 ~~~~~~~~~~~G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~t~~ii~~~~fG~ 191 (307)
....+.++..+|+.|+++||+++ +.|++++++.+++.+.+.++.+++.+.+. ++++|+ .+....++..+++.+ +|.
T Consensus 93 ~~~~~~~~~~Dg~~H~r~R~~~~-~~Fs~~~l~~~~~~i~~~~~~l~~~~~~~-~~~~D~v~~~~~~~~~~~i~~l-~g~ 169 (412)
T 4dnj_A 93 WRPPSLILEADPPAHTRTRAVLS-KVLSPATMKRLRDGFAAAADAKIDELLAR-GGNIDAIADLAEAYPLSVFPDA-MGL 169 (412)
T ss_dssp SSCCCTTTTCCTTHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHHHHHHHT-TSEEETCCCCCCHHHHHHHHHH-HTC
T ss_pred ccCCCccccCChHHHHHHHhhcc-cccCHHHHHHhhHHHHHHHHHHHHhhhcc-CCCceeHHHHHhhhhHhHHHHH-cCC
Confidence 11123455678999999999985 88999999999999999999999998764 356664 445556777888765 454
Q ss_pred ccccchhhHHHHHHHHHHHHHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCH
Q 043529 192 KYTNEIVARHEFKEMADELFILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKDM 271 (307)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~ 271 (307)
...... .+......++..... .. . ........... +...+.+..++.. ...|.
T Consensus 170 ~~~~~~----~~~~~~~~~~~~~~~------~~---~-----~~~~~~~~~~~----~~~~~~~~~~~~~-----~~~~~ 222 (412)
T 4dnj_A 170 KQEGRE----NLLPYAGLVFNAFGP------PN---E-----LRQSAIERSAP----HQAYVAEQCQRPN-----LAPGG 222 (412)
T ss_dssp CSTTGG----GHHHHHHHHHHHTSC------SS---H-----HHHHHHHTCHH----HHHHHHHHTSGGG-----SCTTS
T ss_pred chhhhh----hhhhhhhcccccccc------cH---H-----HHHHHHHHHHH----HHHHHHHHHHhhc-----ccccc
Confidence 433211 222222223322111 00 0 00111111111 2222233332221 12355
Q ss_pred HHHHhhhcCCCCccccCchHHHHHHHHHHhhccCCC
Q 043529 272 MDVLLQLADDPTLEVKLERHSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 272 ld~ll~~~~~~~~~~~lt~~~i~~~~~~l~~aG~~~ 307 (307)
++.++....+ +..++++++++++.++++|||||
T Consensus 223 ~~~l~~~~~~---~~~l~~~e~~~~~~~l~~AG~eT 255 (412)
T 4dnj_A 223 FGACIHAFSD---TGEITPEEAPLLVRSLLSAGLDT 255 (412)
T ss_dssp HHHHHHHTTT---TTSSCTTHHHHHHHHHHHHSSHH
T ss_pred chhhhHhhhh---ccchhHHHHHHHHHHHHhccchh
Confidence 6666653333 34699999999999999999986
No 76
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent, mono-oxygenases, oxidoreductase; HET: HEM; 2.00A {Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Probab=99.59 E-value=1.2e-13 Score=125.34 Aligned_cols=221 Identities=7% Similarity=-0.002 Sum_probs=145.6
Q ss_pred CCchHHHHHHHHhhC-CceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCcCccceeecCCcceEeccCChhHHHHH
Q 043529 53 PLPYRSIHALSEKYG-PIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKLAAGKYTTFNYSNITWSQYGPYWRQLR 131 (307)
Q Consensus 53 ~~~~~~~~~~~~kYG-~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~~~~~~~~~~~~~~~~~~G~~wk~~R 131 (307)
.++|..+.++.++.+ +++..-.|+ ..-+|++++++++||.+ ...|+++....... ............+|++|+++|
T Consensus 37 ~~~~~~~~~lr~~~~~~~~~~~~~g-g~W~vtr~~dv~~vl~d-~~~fs~~~~~~~~~-~~~~~~~~~~~~D~p~H~r~R 113 (417)
T 4dxy_A 37 DGYHEAWKKVQHPGIPDLIWTPFTG-GHWIATNGDTVKEVYSD-PTRFSSEVIFLPKE-AGEKAQMVPTKMDPPEHTPYR 113 (417)
T ss_dssp GCHHHHHHHHSCTTCCSEEEESSTT-SEEEECSHHHHHHHHTC-TTTEESSCCSSSTT-SSCSSCTTTTTCCTTTHHHHH
T ss_pred cChHHHHHHHHhhCCCCEEecCCCC-CEEEECCHHHHHHHHcC-chhccCCCcccccc-cccccccCcccCCcHHHHHHH
Confidence 357777777755543 455443343 57889999999999964 35788765322111 111123344556899999999
Q ss_pred HHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHHH-HHHHHHHHHHHhcCccccchhhHHHHHHHHHHH
Q 043529 132 KICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNLL-DLNLEVMSRMVLGKKYTNEIVARHEFKEMADEL 210 (307)
Q Consensus 132 r~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~t~~ii~~~~fG~~~~~~~~~~~~~~~~~~~~ 210 (307)
|+++ +.|++++++.+++.+.+.++.+++.+.. +.++|+-..+. .++..+++. ++|.... ....+.+....+
T Consensus 114 rll~-~~Fs~~~l~~~~~~i~~~~~~lld~l~~--~g~~D~v~~~a~~l~~~vi~~-llg~~~~----d~~~~~~~~~~~ 185 (417)
T 4dxy_A 114 KALD-KGLNLAKIRKVEDKVREVASSLIDSFAA--RGECDFAAEYAELFPVHVFMA-LADLPLE----DIPVLSEYARQM 185 (417)
T ss_dssp HHHH-HHHCHHHHHTTHHHHHHHHHHHHHHHHT--TSEEEHHHHTTTTHHHHHHHH-HTTCCGG----GHHHHHHHHHHH
T ss_pred HHhh-hhcCHHHHHHHHHHHHHHHHHHHHHhhh--cCCeeeHHHHHhhhHHHHHHH-HcCCCHH----HHHHHHhhhhhh
Confidence 9995 8899999999999999999999999976 45777655543 455666664 5676543 223344433332
Q ss_pred HHhccCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCHHHHHhhhcCCCCccccCch
Q 043529 211 FILGGVLDIGDMIPWLGFLDLQGYIKRMKVLAKKFDRLFEYELDEHNARRKGVDNYEAKDMMDVLLQLADDPTLEVKLER 290 (307)
Q Consensus 211 ~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~ld~ll~~~~~~~~~~~lt~ 290 (307)
.... ...| ...........+.+..++..+|+++++. ...|+++.|+....+ +..+|+
T Consensus 186 ~~~~------~~~~-------~~~~~~~~~~~~~~~~~~~~li~~rr~~-------~~ddl~s~L~~~~~~---~~~~~~ 242 (417)
T 4dxy_A 186 TRPE------GNTP-------EEMATDLEAGNNGFYAYVDPIIRARVGG-------DGDDLITLMVNSEIN---GERIAH 242 (417)
T ss_dssp HSCC------CSSH-------HHHHHHHHHHHHHHHHHHHHHHHHHTTC-------CCCSHHHHHHTCEET---TEECCH
T ss_pred cccc------ccCh-------HHHHHHHHHHHHHHHHHHHHHHHHHhcC-------Cccchhhhhcccccc---CCccch
Confidence 2110 0111 1112334455667778888888877542 257899999874322 456999
Q ss_pred HHHHHHHHHHhhccCCC
Q 043529 291 HSLKAVTQNSCRYGHGD 307 (307)
Q Consensus 291 ~~i~~~~~~l~~aG~~~ 307 (307)
+++.+++..+++|||||
T Consensus 243 ~e~~~~~~~ll~AG~eT 259 (417)
T 4dxy_A 243 DKAQGLISLLLLGGLDT 259 (417)
T ss_dssp HHHHHHHHHHHHHTTHH
T ss_pred hHHHHHHHHHHhhcccc
Confidence 99999999999999986
No 77
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=97.99 E-value=2.1e-08 Score=89.42 Aligned_cols=133 Identities=12% Similarity=0.016 Sum_probs=83.6
Q ss_pred CCCC-CCCCCccccccc-----CCCCchHHHHHHHHhhCCceEEecCCcCEEEecCHHHHHHHHHhcCcccCCCCCcCcc
Q 043529 35 LPPG-PKPWPIIGNLNL-----IGPLPYRSIHALSEKYGPIMQLKFGSFPVVVGSSVEMAEAFLKTHDALFSYRPKLAAG 108 (307)
Q Consensus 35 lpPg-P~~lPilGn~~~-----l~~~~~~~~~~~~~kYG~i~~~~lg~~~~Vvv~~~e~~~evl~~~~~~f~~R~~~~~~ 108 (307)
+||| |+++|++|+... +..+++..+.++.++ ||++.. .+++++++++.++++|.+ ..|+.++.....
T Consensus 35 ~ppG~~~~~P~~G~~~~~~~~~~~~dp~~~~~~lr~~--pV~~~~---~~~~vv~~~~~v~~vl~d--~~f~~~~~~~~~ 107 (381)
T 2yjn_B 35 MIRGLHWGYGSNGDPYPMLLCGHDDDPQRRYRSMRES--GVRRSR---TETWVVADHATARQVLDD--PAFTRATGRTPE 107 (381)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHTCCSCCHHHHHHHHHH--CEEECS---SSCEEECSHHHHHHHHHC--SSEESSCCCCCH
T ss_pred CCCcccccccccCCchhhcCchhccCchHHHHHHHhC--CceeCC---CCEEEEcCHHHHHHHHcC--CCcCCCcccccc
Confidence 5788 558999997533 335788889888765 998754 469999999999999985 368776531100
Q ss_pred c------eeecCCcceEeccCChhHHHHHHHHHHhhcCHHHHHhhHHHHHHHHHHHHHHHHhhcCCceechHHH-HHHHH
Q 043529 109 K------YTTFNYSNITWSQYGPYWRQLRKICLMELFTAKRLNSYEYIRVEETMLFLRNLYESSGKPIILKDNL-LDLNL 181 (307)
Q Consensus 109 ~------~~~~~~~~~~~~~~G~~wk~~Rr~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~t~ 181 (307)
. .......+ ++..+|+.| .+.|+ . ++.+++.++.+++.+. +++|+...+ ..+++
T Consensus 108 ~~~~~~~~~~~~~~~-l~~~dg~~H--------~~~Ft-----~-~~~i~~~~~~ll~~~~----g~~Dl~~~~a~~l~~ 168 (381)
T 2yjn_B 108 WMRAAGAPPAEWAQP-FRDVHAASW--------EGEVP-----D-VGELAESFAGLLPGAG----ARLDLVGDFAWQVPV 168 (381)
T ss_dssp HHHHHTCCHHHHTHH-HHHHHHCCC--------CSCCC-----C-CSCHHHHTSTTSCC----------CCCCCCTHHHH
T ss_pred cccccccccchhhhh-hhhCCchhh--------hhccC-----C-hHHHHHHHHHHHHhcc----CcchHHHHHHHHHHH
Confidence 0 00000122 334468888 25667 3 5677788888887775 357887665 68999
Q ss_pred HHHHHHHhcCccc
Q 043529 182 EVMSRMVLGKKYT 194 (307)
Q Consensus 182 ~ii~~~~fG~~~~ 194 (307)
++||++ ||.+.+
T Consensus 169 ~vi~~l-~G~~~~ 180 (381)
T 2yjn_B 169 QGMTAV-LGAAGV 180 (381)
T ss_dssp HHHHTC------C
T ss_pred HHHHHH-cCCCHH
Confidence 999995 998765
No 78
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.44 E-value=0.96 Score=31.14 Aligned_cols=60 Identities=15% Similarity=0.079 Sum_probs=45.8
Q ss_pred cccccccC-C-CCchHHHHHHHHhhC-CceEEecCCcCEEEecCHHHHHHHHH-hcCcccCCCCC
Q 043529 44 IIGNLNLI-G-PLPYRSIHALSEKYG-PIMQLKFGSFPVVVGSSVEMAEAFLK-THDALFSYRPK 104 (307)
Q Consensus 44 ilGn~~~l-~-~~~~~~~~~~~~kYG-~i~~~~lg~~~~Vvv~~~e~~~evl~-~~~~~f~~R~~ 104 (307)
.+||+..- . ......+.+++.+|| +|..+ .|++=.|...+.+.|+.++. -++..+-+||-
T Consensus 13 YV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 13 YVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-TGCSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp EEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-ecCEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 38998653 2 234556889999995 99888 46778999999999999985 36677777874
No 79
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=87.95 E-value=2 Score=27.99 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=41.0
Q ss_pred cccccccCCCC----chHHHHHHHHhhCCceEEecCC-------cCEEEecCHHHHHHHHHh-cCcccCCC
Q 043529 44 IIGNLNLIGPL----PYRSIHALSEKYGPIMQLKFGS-------FPVVVGSSVEMAEAFLKT-HDALFSYR 102 (307)
Q Consensus 44 ilGn~~~l~~~----~~~~~~~~~~kYG~i~~~~lg~-------~~~Vvv~~~e~~~evl~~-~~~~f~~R 102 (307)
++||++.-... ....+.+++.+||+|..+++.. .=.|...+++.|+.++.. ++..+.+|
T Consensus 5 ~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 5 VVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp EEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 57887543222 3466888899999999988752 236778899999999863 44455554
No 80
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=86.66 E-value=3.2 Score=29.07 Aligned_cols=67 Identities=25% Similarity=0.233 Sum_probs=46.1
Q ss_pred CCCCCCCCCCcccccccCCCCchHHHHHHHHhhCCceEEec---C---CcCEEEecCHHHHHHHHH-hcCcccCCC
Q 043529 34 NLPPGPKPWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKF---G---SFPVVVGSSVEMAEAFLK-THDALFSYR 102 (307)
Q Consensus 34 ~lpPgP~~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~l---g---~~~~Vvv~~~e~~~evl~-~~~~~f~~R 102 (307)
++||.|...-++||++.-. ....+.+++.+||+|..+++ + +.=.|...+++.|..++. -++..+.+|
T Consensus 2 r~~~~~~~~l~V~nlp~~~--t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 75 (115)
T 3lqv_A 2 RLPPEVNRILYIRNLPYKI--TAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNR 75 (115)
T ss_dssp -CCTTCCSEEEEESCCTTC--CHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSC
T ss_pred CCCCCCCCEEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 3466666667899985431 23457788899999999887 2 134788889999999886 355455444
No 81
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.65 E-value=4.6 Score=27.93 Aligned_cols=60 Identities=18% Similarity=0.182 Sum_probs=42.0
Q ss_pred CCcccccccCCCCchHHHHHHHHhhCCceEEecCC--------cCEEEecCHHHHHHHHHhcCcccCCCC
Q 043529 42 WPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS--------FPVVVGSSVEMAEAFLKTHDALFSYRP 103 (307)
Q Consensus 42 lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~--------~~~Vvv~~~e~~~evl~~~~~~f~~R~ 103 (307)
--++||++.- .....+.+++.+||+|..+.+.. .-.|...+++.++.++..++..+.+|+
T Consensus 13 ~lfV~~Lp~~--~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~ 80 (103)
T 1s79_A 13 SVYIKGFPTD--ATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETD 80 (103)
T ss_dssp CEEEECCCTT--CCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTT
T ss_pred EEEEECCCCC--CCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEE
Confidence 4578887542 12346778899999999888642 236778899999999975555555544
No 82
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=79.52 E-value=5.7 Score=27.35 Aligned_cols=62 Identities=18% Similarity=0.205 Sum_probs=44.3
Q ss_pred CCCcccccccCCCC----chHHHHHHHHhhCCceEEecC-------CcCEEEecCHHHHHHHHHh-cCcccCCC
Q 043529 41 PWPIIGNLNLIGPL----PYRSIHALSEKYGPIMQLKFG-------SFPVVVGSSVEMAEAFLKT-HDALFSYR 102 (307)
Q Consensus 41 ~lPilGn~~~l~~~----~~~~~~~~~~kYG~i~~~~lg-------~~~~Vvv~~~e~~~evl~~-~~~~f~~R 102 (307)
..-++||++.-... ....+.+++.+||+|..+++. +.=.|...+++.|+.++.. ++..+.+|
T Consensus 16 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 16 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp SEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 34578888753221 356788899999999998875 2336777899999998874 56566665
No 83
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=78.94 E-value=4.2 Score=25.75 Aligned_cols=58 Identities=12% Similarity=0.178 Sum_probs=39.6
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCC---------cCEEEecCHHHHHHHHHhcCcccCCCC
Q 043529 44 IIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---------FPVVVGSSVEMAEAFLKTHDALFSYRP 103 (307)
Q Consensus 44 ilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---------~~~Vvv~~~e~~~evl~~~~~~f~~R~ 103 (307)
++||++.- -....+.++..+||+|..+.+.. .-.|...+++.++.++..++..+.+|+
T Consensus 3 ~v~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~ 69 (75)
T 1iqt_A 3 FVGGLSPD--TPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSK 69 (75)
T ss_dssp EESCCCSS--CCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBC
T ss_pred EEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEE
Confidence 46666432 12346778889999998887732 225778899999999976655555543
No 84
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=78.86 E-value=4.5 Score=25.66 Aligned_cols=58 Identities=14% Similarity=0.135 Sum_probs=39.2
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCCc---------CEEEecCHHHHHHHHHhcCcccCCCC
Q 043529 44 IIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSF---------PVVVGSSVEMAEAFLKTHDALFSYRP 103 (307)
Q Consensus 44 ilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~---------~~Vvv~~~e~~~evl~~~~~~f~~R~ 103 (307)
++||++.- .....+.++..+||+|..+++... -.|...+++.++.++.-++..+.+|+
T Consensus 3 ~v~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 69 (75)
T 2mss_A 3 FVGGLSVN--TTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKM 69 (75)
T ss_dssp EEECCCSS--CCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCC
T ss_pred EEecCCCC--CCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEE
Confidence 46676432 123457788899999988876422 25777899999999865555555543
No 85
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=78.33 E-value=4 Score=27.93 Aligned_cols=59 Identities=15% Similarity=0.081 Sum_probs=40.6
Q ss_pred CcccccccCCCCchHHHHHHHHhhCCceEEecCC-----c----CEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 43 PIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS-----F----PVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 43 PilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~-----~----~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
-++||++.-. -...+.+++.+||+|..+++.. . =.|-..+++.|+.++.. ++..+.+|+
T Consensus 22 lfV~nLp~~~--te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~ 90 (99)
T 4fxv_A 22 LIVNYLPQNM--TQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKT 90 (99)
T ss_dssp EEEESCCTTC--CHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEeCCCCCC--CHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 4788885431 2346788899999999887632 1 15778899999998864 555555543
No 86
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=76.41 E-value=3.9 Score=28.47 Aligned_cols=68 Identities=16% Similarity=0.017 Sum_probs=45.3
Q ss_pred CCCCCCCCccccccc---CCCCchHHHHHHHHhhCCceEEecCC------c----CEEEecCHHHHHHHHH-hcCcccCC
Q 043529 36 PPGPKPWPIIGNLNL---IGPLPYRSIHALSEKYGPIMQLKFGS------F----PVVVGSSVEMAEAFLK-THDALFSY 101 (307)
Q Consensus 36 pPgP~~lPilGn~~~---l~~~~~~~~~~~~~kYG~i~~~~lg~------~----~~Vvv~~~e~~~evl~-~~~~~f~~ 101 (307)
.|.|...-+|+|+.. +.......+.+...+||+|-.+++.. . =.|...+++.|..+.. -++..|.+
T Consensus 4 ~~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 4 GKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp GGSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 355666667888753 22345567778889999999987632 1 1466788998888775 36667777
Q ss_pred CC
Q 043529 102 RP 103 (307)
Q Consensus 102 R~ 103 (307)
|+
T Consensus 84 r~ 85 (105)
T 2pe8_A 84 RV 85 (105)
T ss_dssp EE
T ss_pred cE
Confidence 65
No 87
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.70 E-value=11 Score=25.03 Aligned_cols=63 Identities=17% Similarity=0.174 Sum_probs=43.4
Q ss_pred CCCCCcccccccCCCCchHHHHHHHHhhCCceEEecCCc---------CEEEecCHHHHHHHHH-hcCcccCCCC
Q 043529 39 PKPWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSF---------PVVVGSSVEMAEAFLK-THDALFSYRP 103 (307)
Q Consensus 39 P~~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~---------~~Vvv~~~e~~~evl~-~~~~~f~~R~ 103 (307)
|..--++||+..- .....+.+++.+||+|..+++-.. =.|...+++.++.++. -++..+.+|+
T Consensus 4 ~~~~l~v~nlp~~--~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (95)
T 2dnz_A 4 GSSGLYVGSLHFN--ITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRP 76 (95)
T ss_dssp CCCEEEEESCCTT--CCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcEEEEeCCCCC--CCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 3344578887542 123467888999999988876332 2577889999999986 3555666665
No 88
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=72.35 E-value=16 Score=25.30 Aligned_cols=59 Identities=14% Similarity=0.057 Sum_probs=41.9
Q ss_pred CcccccccCCCCchHHHHHHHHhhCCceEEecCC---cCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 43 PIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---FPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 43 PilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
-++||+..- .....+.+++.+||+|..+.+.. .=.|...+++.|+.++.. ++..+.+|+
T Consensus 13 l~V~nLp~~--~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 75 (111)
T 1whx_A 13 ILAKNLPAG--TLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVP 75 (111)
T ss_dssp EEEESCCTT--CCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeE
Confidence 467777532 23456788899999999988732 346777899999988863 566676665
No 89
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=72.24 E-value=8.1 Score=27.89 Aligned_cols=62 Identities=23% Similarity=0.234 Sum_probs=41.9
Q ss_pred CCcccccccC-CC-CchHHHHHHHHhhCCceEEecC------CcCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 42 WPIIGNLNLI-GP-LPYRSIHALSEKYGPIMQLKFG------SFPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 42 lPilGn~~~l-~~-~~~~~~~~~~~kYG~i~~~~lg------~~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
--++||+..- .. .+...+.+++.+||+|..+.+. +.=.|...+++.|..++.. ++..+.+|+
T Consensus 31 ~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 31 VVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 3578888642 21 2334466789999999888763 1236788899999998853 455666664
No 90
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=71.69 E-value=5 Score=26.96 Aligned_cols=61 Identities=23% Similarity=0.255 Sum_probs=41.5
Q ss_pred CCcccccccC-C-CCchHHHHHHHHhhCCceEEecC------CcCEEEecCHHHHHHHHHh-cCcccCCC
Q 043529 42 WPIIGNLNLI-G-PLPYRSIHALSEKYGPIMQLKFG------SFPVVVGSSVEMAEAFLKT-HDALFSYR 102 (307)
Q Consensus 42 lPilGn~~~l-~-~~~~~~~~~~~~kYG~i~~~~lg------~~~~Vvv~~~e~~~evl~~-~~~~f~~R 102 (307)
--++||++.- . ......+.+++.+||+|..+.+. +.-.|...+++.++.++.. ++..+.+|
T Consensus 10 ~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (97)
T 1nu4_A 10 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 79 (97)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCc
Confidence 4578888643 2 12333455889999999988764 3447888999999999864 55455444
No 91
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=71.02 E-value=6.7 Score=27.40 Aligned_cols=60 Identities=17% Similarity=0.089 Sum_probs=41.3
Q ss_pred CCCcccccccCCCCchHHHHHHHHhhCCceEEecCCc---------CEEEecCHHHHHHHHHh-cCcccCCC
Q 043529 41 PWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSF---------PVVVGSSVEMAEAFLKT-HDALFSYR 102 (307)
Q Consensus 41 ~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~---------~~Vvv~~~e~~~evl~~-~~~~f~~R 102 (307)
.--++||+..- --...+.+++.+||+|-.+++... =.|...+++.|+.++.. ++..+.+|
T Consensus 7 ~~lfV~nL~~~--~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr 76 (110)
T 3s8s_A 7 KEVTFARLNDN--VRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGN 76 (110)
T ss_dssp CEEEEESCCTT--CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred cEEEEECCCCC--CCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 34578888542 124567888999999999886321 26888999999999863 44445444
No 92
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=70.89 E-value=9.4 Score=25.93 Aligned_cols=60 Identities=20% Similarity=0.361 Sum_probs=41.2
Q ss_pred CCcccccccCC----CCchHHHHHHHHhhCCceEEecCC---------cCEEEecCHHHHHHHHH-hcCcccCC
Q 043529 42 WPIIGNLNLIG----PLPYRSIHALSEKYGPIMQLKFGS---------FPVVVGSSVEMAEAFLK-THDALFSY 101 (307)
Q Consensus 42 lPilGn~~~l~----~~~~~~~~~~~~kYG~i~~~~lg~---------~~~Vvv~~~e~~~evl~-~~~~~f~~ 101 (307)
.-++||++... ......+.+++.+||+|..+++.. .=.|...+++.|+.++. -++..+.+
T Consensus 8 ~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 8 YIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp EEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred EEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 35688886542 123456778899999999988741 23688889999999885 34545544
No 93
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=70.51 E-value=18 Score=24.24 Aligned_cols=60 Identities=17% Similarity=0.089 Sum_probs=39.5
Q ss_pred CCcccccccCCCCchHHHHHHHHhhCCceE--------EecCC---------cCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 42 WPIIGNLNLIGPLPYRSIHALSEKYGPIMQ--------LKFGS---------FPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 42 lPilGn~~~l~~~~~~~~~~~~~kYG~i~~--------~~lg~---------~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
--++||+..- .-...+.+++.+||+|.. +++.. .=.|...+++.++.++.. ++..+.+|+
T Consensus 15 ~l~V~nLp~~--~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 92 (99)
T 2la6_A 15 TIFVQGLGEN--VTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNP 92 (99)
T ss_dssp EEEEECCCSS--CCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSB
T ss_pred EEEEeCCCCC--CCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 4467887542 124567888999999876 55421 225777899999998863 555555543
No 94
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=69.30 E-value=9.1 Score=24.91 Aligned_cols=59 Identities=17% Similarity=0.137 Sum_probs=39.9
Q ss_pred CCcccccccCCCCchHHHHHHHHhhCCceEEecCC---------cCEEEecCHHHHHHHHHh-cCcccCCC
Q 043529 42 WPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---------FPVVVGSSVEMAEAFLKT-HDALFSYR 102 (307)
Q Consensus 42 lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---------~~~Vvv~~~e~~~evl~~-~~~~f~~R 102 (307)
--++||+..- .....+.++..+||+|..+++-. .=.|-..+++.|+.++.. ++..+.+|
T Consensus 8 ~l~v~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 76 (87)
T 3bs9_A 8 HVFVGDLSPE--ITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 76 (87)
T ss_dssp EEEEESCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 3467887542 12346788889999998887632 125778899999999874 44444444
No 95
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=68.44 E-value=18 Score=23.29 Aligned_cols=62 Identities=21% Similarity=0.172 Sum_probs=41.7
Q ss_pred CCCCCcccccccCCCCchHHHHHHHHhhCCceEEecCC---------cCEEEecCHHHHHHHHHh-cCcccCCC
Q 043529 39 PKPWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---------FPVVVGSSVEMAEAFLKT-HDALFSYR 102 (307)
Q Consensus 39 P~~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---------~~~Vvv~~~e~~~evl~~-~~~~f~~R 102 (307)
|...-++||++.-. ....+.++..+||+|..+++.. .=.|...+++.++.++.. ++..+.+|
T Consensus 6 ~~~~l~V~nl~~~~--~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 77 (85)
T 3mdf_A 6 TKRVLYVGGLAEEV--DDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR 77 (85)
T ss_dssp CSSEEEEECCCTTC--CHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEECCCCCC--CHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 33445788885421 2356778899999999988632 126778899999998853 55444443
No 96
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.21 E-value=18 Score=24.09 Aligned_cols=65 Identities=15% Similarity=0.041 Sum_probs=43.9
Q ss_pred CCCCCCCcccccccCCCCchHHHHHHHHhhCCce-EEecCCc---------CEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 37 PGPKPWPIIGNLNLIGPLPYRSIHALSEKYGPIM-QLKFGSF---------PVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 37 PgP~~lPilGn~~~l~~~~~~~~~~~~~kYG~i~-~~~lg~~---------~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
+.|..--++||+..-. -...+.+++.+||+|. .+++... =.|-..+++.++.++.. ++..+.+|.
T Consensus 6 ~~~~~~l~V~nLp~~~--t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (99)
T 2div_A 6 SGMAASLWMGDLEPYM--DENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT 81 (99)
T ss_dssp CSSSSEEEECSCCTTC--CHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred CCCccEEEEeCCCCCC--CHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 3444455788885431 2346778889999988 7776321 26777899999999873 555566654
No 97
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=68.08 E-value=14 Score=24.72 Aligned_cols=59 Identities=10% Similarity=0.060 Sum_probs=41.3
Q ss_pred CCCcccccccCCCCchHHHHHHHHhhCCceEEecCC---cCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 41 PWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---FPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 41 ~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
.--++||+ . .-...+.+++.+||+|..+.++. .-.|...+++.++.++.. ++..+.+|+
T Consensus 16 ~~l~V~n~-~---~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 78 (97)
T 1x5p_A 16 NTLYVYGE-D---MTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQ 78 (97)
T ss_dssp SEEEEECS-S---CCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEE
T ss_pred CEEEEcCC-C---CCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 34578884 2 23456888899999999998863 236777899999999864 455555443
No 98
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=67.87 E-value=20 Score=23.88 Aligned_cols=61 Identities=20% Similarity=0.181 Sum_probs=41.6
Q ss_pred CCCcccccccCCCCchHHHHHHHHhhCCceEEecCCc---------CEEEecCHHHHHHHHH-hcCcccCCCC
Q 043529 41 PWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSF---------PVVVGSSVEMAEAFLK-THDALFSYRP 103 (307)
Q Consensus 41 ~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~---------~~Vvv~~~e~~~evl~-~~~~~f~~R~ 103 (307)
.--++||++.- -....+.+++.+||+|..+++-.. =.|...+++.|+.++. -++..+.+|+
T Consensus 9 ~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (99)
T 1whw_A 9 GRLFVRNLSYT--SSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRM 79 (99)
T ss_dssp EEEEEECCCTT--CCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCE
T ss_pred CEEEEeCCCCC--CCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 34567887542 123467888999999999887422 3677899999999984 3444555554
No 99
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=67.84 E-value=12 Score=26.26 Aligned_cols=60 Identities=12% Similarity=0.017 Sum_probs=42.3
Q ss_pred CCcccccccCCCCchHHHHHHHHhhC-CceEEecC-----CcCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 42 WPIIGNLNLIGPLPYRSIHALSEKYG-PIMQLKFG-----SFPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 42 lPilGn~~~l~~~~~~~~~~~~~kYG-~i~~~~lg-----~~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
--++||+..- .-...+.+++.+|| .|..+.+. +.=.|...+++.++.++.+ ++..+.+|+
T Consensus 30 ~l~VgnLp~~--~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~ 96 (111)
T 2jvr_A 30 RITMKNLPEG--CSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSV 96 (111)
T ss_dssp EEEEECSSCC--CCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEE
T ss_pred EEEEECCCCC--CCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 4578888543 23456888999999 78887763 3347888899999999864 455555553
No 100
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=67.31 E-value=19 Score=24.46 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=40.3
Q ss_pred CcccccccCCCCchHHHHHHHHhhCCceEEecCC---------cCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 43 PIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---------FPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 43 PilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---------~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
-++||+..- -....+.+++.+||+|..+++.. .=.|...+++.|+.++.. ++..+.+|+
T Consensus 26 l~V~nlp~~--~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 94 (106)
T 1p27_B 26 LFVTGVHEE--ATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 94 (106)
T ss_dssp EEEECCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred EEEeCCCCC--CCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcE
Confidence 467777542 12345788899999998887631 225778899999999864 555555554
No 101
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=66.86 E-value=27 Score=23.63 Aligned_cols=60 Identities=15% Similarity=0.146 Sum_probs=42.8
Q ss_pred CCcccccccCCCCchHHHHHHHHhhCCceEEecCCc----------CEEEecCHHHHHHHHHh--cCcccCCCC
Q 043529 42 WPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSF----------PVVVGSSVEMAEAFLKT--HDALFSYRP 103 (307)
Q Consensus 42 lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~----------~~Vvv~~~e~~~evl~~--~~~~f~~R~ 103 (307)
--++||+..- .....+.+++.+||+|..+++-.. =.|...+++.|+.++.. ++..+.+|+
T Consensus 17 ~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 17 KILVRNIPFQ--ANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp CEEEESCCTT--CCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred EEEEeCCCCc--CCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 4468887542 123457888999999999887443 26777899999999875 566666664
No 102
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=66.72 E-value=18 Score=24.73 Aligned_cols=59 Identities=14% Similarity=0.097 Sum_probs=40.4
Q ss_pred CcccccccCCCCchHHHHHHHHhhCCceEEecCC---------cCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 43 PIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---------FPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 43 PilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---------~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
-++||+..- .....+.+++.+||+|..+++.. .=.|...+++.++.++.. ++..+.+|+
T Consensus 29 l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 97 (110)
T 1oo0_B 29 LFVTSIHEE--AQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT 97 (110)
T ss_dssp EEEESCCTT--CCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 467777542 12345788899999999988742 236778899999998863 554554443
No 103
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.62 E-value=27 Score=23.56 Aligned_cols=60 Identities=18% Similarity=0.094 Sum_probs=42.4
Q ss_pred CCcccccccCCCCchHHHHHHHHhhCCceEEecCCc---------CEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 42 WPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSF---------PVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 42 lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~---------~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
--++||+..- .....+.+++.+||+|..+++... =.|...+++.++.++.. ++..+.+|+
T Consensus 17 ~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (105)
T 1x5u_A 17 TVYVGGLDEK--VSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKP 86 (105)
T ss_dssp EEEEECCCTT--CCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCB
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 4467887542 124467888999999999887432 26778999999999875 555565554
No 104
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=66.49 E-value=23 Score=24.92 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=41.8
Q ss_pred CcccccccCCCCchHHHHHHHHhhCCceEEecCC---------cCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 43 PIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---------FPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 43 PilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---------~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
-++||+..- .....+.+++.+||+|..+.+.. .=.|...+++.|+.++.. ++..+.+++
T Consensus 25 l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 93 (126)
T 3ex7_B 25 LFVTGVHEE--ATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 93 (126)
T ss_dssp EEEESCCTT--CCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 467777532 12456778899999999988732 236888999999999853 666666665
No 105
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.29 E-value=23 Score=23.61 Aligned_cols=61 Identities=8% Similarity=0.049 Sum_probs=43.2
Q ss_pred CCCcccccccCCCCchHHHHHHHHhhCCceEEecCC---------cCEEEecCHHHHHHHHHhcCcccCCCC
Q 043529 41 PWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---------FPVVVGSSVEMAEAFLKTHDALFSYRP 103 (307)
Q Consensus 41 ~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---------~~~Vvv~~~e~~~evl~~~~~~f~~R~ 103 (307)
.--++||+..-. ....+.+++.+||+|..+++.. .=.|...+++.++.++.-++..+.+|+
T Consensus 11 ~~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~ 80 (99)
T 2dgs_A 11 NKIFVGGIPHNC--GETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKK 80 (99)
T ss_dssp CEEEEESCCSSC--CHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCB
T ss_pred CEEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeE
Confidence 344688875431 2345788899999999888732 236778999999999876666666665
No 106
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.00 E-value=25 Score=22.97 Aligned_cols=63 Identities=13% Similarity=0.115 Sum_probs=43.7
Q ss_pred CCCCCcccccccCCCCchHHHHHHHHhhCCceEEecCC-cCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 39 PKPWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS-FPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 39 P~~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~-~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
+..--++||++.-. ....+.+++.+||+|..+++.. .-.|...+++.++.++.. ++..+.+|+
T Consensus 8 ~~~~l~V~nlp~~~--t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 72 (90)
T 2dnp_A 8 NTWKIFVGNVSAAC--TSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKR 72 (90)
T ss_dssp CSCCEEEESCCTTC--CHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEeCCCCCC--CHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 33445788885431 2346778889999999988653 446778899999998863 555555554
No 107
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=65.96 E-value=8.8 Score=27.14 Aligned_cols=68 Identities=15% Similarity=0.055 Sum_probs=45.1
Q ss_pred CCCCCCCCcccccccCC---C-----CchHHHHHHHHhhCCceEEecCC-----cCEEEecCHHHHHHHHH-hcCcccCC
Q 043529 36 PPGPKPWPIIGNLNLIG---P-----LPYRSIHALSEKYGPIMQLKFGS-----FPVVVGSSVEMAEAFLK-THDALFSY 101 (307)
Q Consensus 36 pPgP~~lPilGn~~~l~---~-----~~~~~~~~~~~kYG~i~~~~lg~-----~~~Vvv~~~e~~~evl~-~~~~~f~~ 101 (307)
||-|...-+|-|+.... . .....+.+...+||+|..+++-. .=.|-..+++.|+.++. -++..|.+
T Consensus 3 ~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 3 QPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 57777777788875431 1 12344566678999999988742 23566778888888764 35666766
Q ss_pred CC
Q 043529 102 RP 103 (307)
Q Consensus 102 R~ 103 (307)
|+
T Consensus 83 R~ 84 (114)
T 3s6e_A 83 KM 84 (114)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 108
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=65.95 E-value=19 Score=24.00 Aligned_cols=60 Identities=18% Similarity=0.231 Sum_probs=43.0
Q ss_pred CCccccccc-CCCCchHHHHHHHHhhCCceEEecC-CcCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 42 WPIIGNLNL-IGPLPYRSIHALSEKYGPIMQLKFG-SFPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 42 lPilGn~~~-l~~~~~~~~~~~~~kYG~i~~~~lg-~~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
--++||++. -. ....+.+++.+||+|..+.+. +.-.|...+++.++.++.. ++..+.+|+
T Consensus 12 ~l~V~nlp~~~~--t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 74 (96)
T 2kvi_A 12 RLFIGNLPLKNV--SKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNFGKK 74 (96)
T ss_dssp EEEEESSTTSCC--CHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCBTTT
T ss_pred EEEEeCCCcccC--CHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 347888864 21 234678889999999998874 3456778899999999874 555665655
No 109
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=65.74 E-value=34 Score=24.42 Aligned_cols=64 Identities=22% Similarity=0.232 Sum_probs=43.0
Q ss_pred CCCCCCcccccccCCCCchHHHHHHHHhhCCceEEecCC---------cCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 38 GPKPWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---------FPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 38 gP~~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---------~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
.|...-++||+..-. -...+.+++.+||+|..+++.. .=.|...+++.|+.++.. ++..+.+|+
T Consensus 44 ~~~~~l~V~nLp~~~--te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~ 117 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYT--TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 117 (129)
T ss_dssp CCSSCBCEETCTTSC--CHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCCEEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 333455788875421 2346788899999999988732 225777899999999873 555555554
No 110
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=65.55 E-value=12 Score=26.59 Aligned_cols=58 Identities=10% Similarity=0.066 Sum_probs=40.7
Q ss_pred CCcccccccCCCCchHHHHHHHHhhCCceEEecCC---cCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 42 WPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---FPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 42 lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
--++||+ . .-...+.+++.+||+|..+.++. .-.|...+++.|+.++.. ++..+.+|+
T Consensus 41 ~lfVgnl-~---~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~ 102 (121)
T 2bz2_A 41 TLYVYGE-D---MTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQ 102 (121)
T ss_dssp EEEEECS-S---CCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCB
T ss_pred EEEEcCC-C---CCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 3467873 2 23456888899999998888762 336777899999998854 555565554
No 111
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=65.48 E-value=16 Score=23.59 Aligned_cols=59 Identities=20% Similarity=0.171 Sum_probs=40.3
Q ss_pred CcccccccCCCCchHHHHHHHHhhCCceEEecCC----------cCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 43 PIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS----------FPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 43 PilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~----------~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
-++||++.-. ....+.++..+||+|..+.+.. .=.|...+++.++.++.. ++..+.+|+
T Consensus 7 l~V~nlp~~~--t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (88)
T 4a8x_A 7 VHIGRLTRNV--TKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQE 76 (88)
T ss_dssp EEEECCCTTC--CHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEeCCCCCC--CHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeE
Confidence 3677775321 2346778889999998887621 236778899999999874 555555543
No 112
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=65.20 E-value=13 Score=26.05 Aligned_cols=59 Identities=20% Similarity=0.205 Sum_probs=41.3
Q ss_pred CcccccccCCCCchHHHHHHHHhhCCceEEecCC-------cCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 43 PIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS-------FPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 43 PilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~-------~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
-++||+..-. -...+.+++.+||+|..+++.. .=.|-..+++.|+.++.. ++..+.+|+
T Consensus 8 lfV~nLp~~~--te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~ 74 (115)
T 4f25_A 8 IFIKNLDKSI--DNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRK 74 (115)
T ss_dssp EEEESCCTTC--CHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred EEECCCCCCC--CHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 5788875421 2356788899999998887632 126888999999999864 555555553
No 113
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=65.13 E-value=17 Score=23.92 Aligned_cols=64 Identities=23% Similarity=0.284 Sum_probs=42.7
Q ss_pred CCCCCCCcccccccCCCCchHHHHHHHHhhCCceEEecC------C---cCEEEecCHHHHHHHHHh-cCcccCCC
Q 043529 37 PGPKPWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFG------S---FPVVVGSSVEMAEAFLKT-HDALFSYR 102 (307)
Q Consensus 37 PgP~~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg------~---~~~Vvv~~~e~~~evl~~-~~~~f~~R 102 (307)
|.|...-++||++.- -....+.+++.+||+|..+++. . .=.|...+++.++.++.. ++..+.+|
T Consensus 12 ~~~~~~l~v~nlp~~--~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLY--TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 85 (95)
T ss_dssp CCGGGCEEEESCCSS--CCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCEEEEECCCCC--CCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 444445578887543 1234678889999999888763 1 125777899999999874 44444444
No 114
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=64.86 E-value=7.9 Score=26.04 Aligned_cols=62 Identities=10% Similarity=0.057 Sum_probs=41.2
Q ss_pred CCcccccccC-C-CCchHHHHHHHHhhCCceEEecCC------cCEEEecCHHHHHHHHH-hcCcccCCCC
Q 043529 42 WPIIGNLNLI-G-PLPYRSIHALSEKYGPIMQLKFGS------FPVVVGSSVEMAEAFLK-THDALFSYRP 103 (307)
Q Consensus 42 lPilGn~~~l-~-~~~~~~~~~~~~kYG~i~~~~lg~------~~~Vvv~~~e~~~evl~-~~~~~f~~R~ 103 (307)
--++||+..- . ..+...+.+++.+||+|..+++.. .=.|...+++.|+.++. -++..+.+|+
T Consensus 11 ~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 11 DVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred EEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 3578888643 2 122333448899999999988752 23677789999999886 3455555553
No 115
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=64.76 E-value=21 Score=24.84 Aligned_cols=60 Identities=12% Similarity=0.084 Sum_probs=42.3
Q ss_pred CCcccccccCCCCchHHHHHHHHhhCCceEEecC--CcCEEEecCHHHHHHHHH-hcCcccCCCC
Q 043529 42 WPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFG--SFPVVVGSSVEMAEAFLK-THDALFSYRP 103 (307)
Q Consensus 42 lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg--~~~~Vvv~~~e~~~evl~-~~~~~f~~R~ 103 (307)
--++||+..-. -...+.+++.+||+|..+.+. +.=.|...+++.|+.++. -++..+.+|.
T Consensus 18 ~l~V~nLp~~~--t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 18 RVVVSGLPPSG--SWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp CEEEEECCSSC--CTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 34688886431 123577888999999988874 345677889999999886 3555666665
No 116
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=64.66 E-value=18 Score=24.29 Aligned_cols=59 Identities=15% Similarity=0.267 Sum_probs=39.9
Q ss_pred CCCccccccc-CCCCchHHHHHHHHhhCCceEEecCC---cCEEEecCHHHHHHHHHh-cCcccCCC
Q 043529 41 PWPIIGNLNL-IGPLPYRSIHALSEKYGPIMQLKFGS---FPVVVGSSVEMAEAFLKT-HDALFSYR 102 (307)
Q Consensus 41 ~lPilGn~~~-l~~~~~~~~~~~~~kYG~i~~~~lg~---~~~Vvv~~~e~~~evl~~-~~~~f~~R 102 (307)
.|-++||+.. .. -..+.+++.+||||..+++.. .=.|-..+++.|..+... ++..+.+|
T Consensus 8 ~wL~VgNL~~~~t---e~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr 71 (89)
T 2wbr_A 8 SWLLLKNLTAQID---GPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANT 71 (89)
T ss_dssp CEEEEECCCTTCC---CHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ceEEEeCCCccCC---HHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCc
Confidence 5678899854 32 246888999999999998753 236777888777776642 33344443
No 117
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=64.56 E-value=10 Score=26.90 Aligned_cols=65 Identities=12% Similarity=0.040 Sum_probs=44.3
Q ss_pred CCCCCccccccc---CCCCchHHHHHHHHhhCCceEEecCCc-------------CEEEecCHHHHHHHHHh-cCcccCC
Q 043529 39 PKPWPIIGNLNL---IGPLPYRSIHALSEKYGPIMQLKFGSF-------------PVVVGSSVEMAEAFLKT-HDALFSY 101 (307)
Q Consensus 39 P~~lPilGn~~~---l~~~~~~~~~~~~~kYG~i~~~~lg~~-------------~~Vvv~~~e~~~evl~~-~~~~f~~ 101 (307)
|...-+|.|+.. +.......+.+...+||+|..+++... =.|-..+++.|+.+... ++..|.+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 445567888753 234566777888889999998876421 24566788888887643 5667777
Q ss_pred CC
Q 043529 102 RP 103 (307)
Q Consensus 102 R~ 103 (307)
|+
T Consensus 99 R~ 100 (118)
T 3ue2_A 99 RK 100 (118)
T ss_dssp EE
T ss_pred cE
Confidence 65
No 118
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.56 E-value=22 Score=23.73 Aligned_cols=61 Identities=10% Similarity=0.071 Sum_probs=41.6
Q ss_pred CCCcccccccCCCCchHHHHHHHHhhCCceEEecCC--------cCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 41 PWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS--------FPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 41 ~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~--------~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
.--++||++.- -....+.+++.+||+|..+++.. .=.|...+++.|+.++.. ++..+.+|+
T Consensus 18 ~~l~v~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 87 (100)
T 2do4_A 18 HKLFISGLPFS--CTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENI 87 (100)
T ss_dssp SCEEEESCCTT--CCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred CEEEEeCCCCC--CCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34567887542 12345788899999998887632 236778999999999854 555555543
No 119
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=64.38 E-value=10 Score=24.73 Aligned_cols=58 Identities=17% Similarity=0.159 Sum_probs=38.9
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCCc---------CEEEecCHHHHHHHHHhcCcccCCCC
Q 043529 44 IIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSF---------PVVVGSSVEMAEAFLKTHDALFSYRP 103 (307)
Q Consensus 44 ilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~---------~~Vvv~~~e~~~evl~~~~~~f~~R~ 103 (307)
++||++.- -....+.+++.+||+|..+++... =.|...+++.++.++.-++..+.+|+
T Consensus 10 ~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~ 76 (89)
T 3ucg_A 10 YVGNVDYG--ATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQ 76 (89)
T ss_dssp EEESCCTT--CCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEE
T ss_pred EEeCCCCC--CCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcE
Confidence 56676432 124567888999999988876322 26778889999988854555555543
No 120
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=64.20 E-value=23 Score=26.05 Aligned_cols=60 Identities=18% Similarity=0.129 Sum_probs=42.3
Q ss_pred CCcccccccCCCCchHHHHHHHHhhCCceEEecCCc---------CEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 42 WPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSF---------PVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 42 lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~---------~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
.-++||++.- --...+.+++.+||+|..+++... =.|...+++.++.++.. ++..+.+|+
T Consensus 72 ~l~v~nl~~~--~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 141 (158)
T 2kn4_A 72 SLKVDNLTYR--TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 141 (158)
T ss_dssp EEEEESCCTT--CCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSE
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 4467777432 124467788899999999887542 26778999999999975 555666654
No 121
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=64.19 E-value=15 Score=23.56 Aligned_cols=58 Identities=14% Similarity=0.195 Sum_probs=39.2
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCC---------cCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 44 IIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---------FPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 44 ilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---------~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
++||++.- -....+.++..+||+|..+++.. .=.|...+++.++.++.. ++..+.+|+
T Consensus 5 ~V~nlp~~--~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 72 (83)
T 3md1_A 5 FVGDLNVN--VDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 72 (83)
T ss_dssp EEECCCTT--CCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred EEeCCCCC--CCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 46776432 12346778889999998887632 127888999999999874 555555543
No 122
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=64.18 E-value=9.4 Score=24.90 Aligned_cols=62 Identities=13% Similarity=0.198 Sum_probs=41.3
Q ss_pred CCCCCcccccccCCCCchHHHHHHHHhhCCceEEecCC---------cCEEEecCHHHHHHHHHhcCcccCCC
Q 043529 39 PKPWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---------FPVVVGSSVEMAEAFLKTHDALFSYR 102 (307)
Q Consensus 39 P~~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---------~~~Vvv~~~e~~~evl~~~~~~f~~R 102 (307)
+..--++||++.-. ....+.+++.+||+|..+++-. .=.|...+++.++.++..++..+.+|
T Consensus 10 ~~~~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~ 80 (87)
T 3s7r_A 10 DAGKMFVGGLSWDT--SKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGR 80 (87)
T ss_dssp CTTEEEEECCCTTC--CHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTE
T ss_pred CCCEEEEeCCCCCC--CHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCE
Confidence 33445788885421 3456788899999998887631 12577789999999986554444333
No 123
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.05 E-value=21 Score=24.46 Aligned_cols=47 Identities=26% Similarity=0.321 Sum_probs=35.8
Q ss_pred hHHHHHHHHhhCCceEEecCCc----CEEEecCHHHHHHHHHhcCcccCCCC
Q 043529 56 YRSIHALSEKYGPIMQLKFGSF----PVVVGSSVEMAEAFLKTHDALFSYRP 103 (307)
Q Consensus 56 ~~~~~~~~~kYG~i~~~~lg~~----~~Vvv~~~e~~~evl~~~~~~f~~R~ 103 (307)
...+.+++.+||+|..+++.+. =.|...+++.|..++.. ...+.+|+
T Consensus 31 e~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~ 81 (100)
T 2d9o_A 31 KDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQN-EVGLVDNP 81 (100)
T ss_dssp HHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHT-CCBCSSSB
T ss_pred HHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHh-cCCCCCCe
Confidence 5678889999999999887432 26778899999999875 44455555
No 124
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=63.27 E-value=25 Score=22.95 Aligned_cols=60 Identities=18% Similarity=0.155 Sum_probs=41.0
Q ss_pred CCcccccccCCCCchHHHHHHHHhhCCceEEecCC-------cCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 42 WPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS-------FPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 42 lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~-------~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
--++||++.- .....+.+++.+||+|..+++-. .-.|...+++.++.++.. ++..+.+|+
T Consensus 10 ~l~V~nlp~~--~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 77 (92)
T 2dgv_A 10 QIFVRNLPFD--FTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGRE 77 (92)
T ss_dssp EEEECSCCTT--CCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBC
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 3467887532 22456788899999998877531 236777899999998864 555566654
No 125
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=62.48 E-value=13 Score=27.86 Aligned_cols=59 Identities=14% Similarity=0.097 Sum_probs=40.7
Q ss_pred CcccccccCCCCchHHHHHHHHhhCCceEEecCC---------cCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 43 PIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---------FPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 43 PilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---------~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
-++||++.- .....+.+++.+||+|..+.+.. .=.|...+++.|+.++.. ++..+.+++
T Consensus 75 l~V~nLp~~--~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 143 (165)
T 1rk8_A 75 LFVTSIHEE--AQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT 143 (165)
T ss_dssp EEEESCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEeCCCCC--CCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 467777542 23456888899999998887632 236778899999998863 555555543
No 126
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.23 E-value=20 Score=24.15 Aligned_cols=62 Identities=13% Similarity=0.162 Sum_probs=42.3
Q ss_pred CCCCcccccccCCCCchHHHHHHHHhhCCceEEecCC-------cCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 40 KPWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS-------FPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 40 ~~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~-------~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
..--++||+..- .-...+.+++.+||+|..+++-. .=.|...+++.|+.++.. ++..+.+|+
T Consensus 15 ~~~l~V~nlp~~--~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cq3_A 15 PKRLHVSNIPFR--FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRK 84 (103)
T ss_dssp CCEEEEESCCTT--CCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 334578887542 12345778889999998887632 236778899999999864 555555554
No 127
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=62.05 E-value=18 Score=24.25 Aligned_cols=58 Identities=17% Similarity=0.173 Sum_probs=39.9
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCC----cCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 44 IIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS----FPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 44 ilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~----~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
++||++.- -....+.+++.+||+|-.+++.. .-.|-..+++.|+.++.. ++..+.+|+
T Consensus 4 ~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 66 (101)
T 2hvz_A 4 YVGNLGTG--AGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSR 66 (101)
T ss_dssp EEECCCSS--CSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCC
T ss_pred EEeCCCCC--CCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcE
Confidence 46776432 12346788899999998888642 346777899999998863 445566654
No 128
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.94 E-value=21 Score=23.47 Aligned_cols=51 Identities=14% Similarity=0.224 Sum_probs=37.2
Q ss_pred CCCcccccccCCCCchHHHHHHHHhhCCceEEecCC---------cCEEEecCHHHHHHHHH
Q 043529 41 PWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---------FPVVVGSSVEMAEAFLK 93 (307)
Q Consensus 41 ~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---------~~~Vvv~~~e~~~evl~ 93 (307)
..-++||++.- .....+.++..+||+|..+++.. .-.|...+++.++.++.
T Consensus 17 ~~l~V~nlp~~--~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 76 (94)
T 2e5h_A 17 STVYVSNLPFS--LTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTR 76 (94)
T ss_dssp TSEEEESCCTT--SCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCCC--CCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHH
Confidence 34578888532 12345788889999999888732 23678899999999985
No 129
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=60.86 E-value=20 Score=24.66 Aligned_cols=60 Identities=12% Similarity=0.086 Sum_probs=41.2
Q ss_pred CCCcccccccCCCCchHHHHHHHHhhCCceEEecCC---------cCEEEecCHHHHHHHHHhcCcccCCC
Q 043529 41 PWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---------FPVVVGSSVEMAEAFLKTHDALFSYR 102 (307)
Q Consensus 41 ~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---------~~~Vvv~~~e~~~evl~~~~~~f~~R 102 (307)
.--++||+..- --...+.+++.+||+|..+++.. .=.|...+++.++.++...+..+.+|
T Consensus 26 ~~lfV~nLp~~--~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~ 94 (109)
T 2rs2_A 26 CKMFIGGLSWQ--TTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSK 94 (109)
T ss_dssp CCEEEESCCTT--CCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTE
T ss_pred CEEEEeCCCCC--CCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCE
Confidence 34578887532 12345778889999998888642 22678899999999997654444444
No 130
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.72 E-value=27 Score=23.44 Aligned_cols=66 Identities=18% Similarity=0.074 Sum_probs=44.6
Q ss_pred CCCCCCCCcccccccCCCCchHHHHHHHHhhCCceEEecCC-------cCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 36 PPGPKPWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS-------FPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 36 pPgP~~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~-------~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
.+-+..--++||+..-. ....+.+++.+||+|..+.+.. .=.|...+++.|+.++.. ++..+.+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGI--DDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 84 (103)
T ss_dssp CCSSCCCEEEECCCTTC--CHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCCCCEEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 34444556788885431 2345778889999998887641 236778999999999863 555665554
No 131
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=60.71 E-value=33 Score=22.68 Aligned_cols=60 Identities=15% Similarity=0.212 Sum_probs=41.1
Q ss_pred CCCCCcccccccCCCCchHHHHHHHHhhCCceEEecCC---cCEEEecCHHHHHHHHHh-cCcccC
Q 043529 39 PKPWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---FPVVVGSSVEMAEAFLKT-HDALFS 100 (307)
Q Consensus 39 P~~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---~~~Vvv~~~e~~~evl~~-~~~~f~ 100 (307)
|..--++||+..-. -...+.+++.+||+|..+++.. .=.|...+++.|+.++.. ++..+.
T Consensus 16 ~~~~l~V~nlp~~~--t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (97)
T 1why_A 16 PTTRLWVGGLGPNT--SLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLG 79 (97)
T ss_dssp CCSCEEEECCCSSC--CHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCCEEEEeCCCCCC--CHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 33445788875431 2346778899999999988643 336777899999998863 554555
No 132
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=60.70 E-value=24 Score=23.81 Aligned_cols=60 Identities=8% Similarity=0.040 Sum_probs=42.1
Q ss_pred CCcccccccCCCCchHHHHHHHHhhCCceEEecCC-cCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 42 WPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS-FPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 42 lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~-~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
--++||+..- .-...+.+++.+||+|..+.+.. .=.|-..+++.++.++.. ++..+.+|+
T Consensus 13 ~l~V~nl~~~--~t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 74 (103)
T 2dgu_A 13 VLFVRNLANT--VTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGEN 74 (103)
T ss_dssp CEEEECCCTT--CCHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCccCCCE
Confidence 4578887542 12346778889999999988653 346777899999999874 555555543
No 133
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.57 E-value=16 Score=24.81 Aligned_cols=63 Identities=11% Similarity=0.085 Sum_probs=43.5
Q ss_pred CCCCCcccccccCCCCchHHHHHHHHhhCCceEEecCCc---------CEEEecCHHHHHHHHHhcCcccCCCC
Q 043529 39 PKPWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSF---------PVVVGSSVEMAEAFLKTHDALFSYRP 103 (307)
Q Consensus 39 P~~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~---------~~Vvv~~~e~~~evl~~~~~~f~~R~ 103 (307)
+..--++||+..- .....+.+++.+||+|..+++... =.|...+++.++.++..++..+.+|+
T Consensus 15 ~~~~l~V~nlp~~--~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 86 (105)
T 2dh8_A 15 EIGKLFVGGLDWS--TTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRN 86 (105)
T ss_dssp SSSEECCBSCCTT--CCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEE
T ss_pred CCCEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEE
Confidence 3344568887543 123467888999999988876332 25778899999999877666666654
No 134
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=59.32 E-value=20 Score=24.34 Aligned_cols=60 Identities=18% Similarity=0.100 Sum_probs=41.9
Q ss_pred CCcccccccCCCCchHHHHHHHHhhCCceE-EecC--------CcCEEEecCHHHHHHHHHhcCcccCCCC
Q 043529 42 WPIIGNLNLIGPLPYRSIHALSEKYGPIMQ-LKFG--------SFPVVVGSSVEMAEAFLKTHDALFSYRP 103 (307)
Q Consensus 42 lPilGn~~~l~~~~~~~~~~~~~kYG~i~~-~~lg--------~~~~Vvv~~~e~~~evl~~~~~~f~~R~ 103 (307)
.-++||++.-. -...+.+++.+||+|-. +.+. +.-.|...+++.++.++..++..+.+|+
T Consensus 17 ~l~V~nLp~~~--te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~ 85 (104)
T 1wg5_A 17 FVRLRGLPFGC--SKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 85 (104)
T ss_dssp EEEEESCCTTC--CHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSC
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcE
Confidence 34678875432 24467888899998765 5542 1237788999999999987766666664
No 135
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=59.10 E-value=20 Score=23.65 Aligned_cols=53 Identities=11% Similarity=0.141 Sum_probs=36.1
Q ss_pred CCCCCCCcccccccCCCCchHHHHHHHHhhCCceEEecCC----cCEEEecCHHHHHHH
Q 043529 37 PGPKPWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS----FPVVVGSSVEMAEAF 91 (307)
Q Consensus 37 PgP~~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~----~~~Vvv~~~e~~~ev 91 (307)
+-|...-++||+..-. -...+.+.+.+||+|..+++.. .-.|...+++.|+++
T Consensus 8 ~~~~~~l~V~~Lp~~~--te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDM--TAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSL 64 (89)
T ss_dssp ---CCEEEEESCCTTC--CHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHHH
T ss_pred CCCCCEEEEeCCCCCC--CHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHHH
Confidence 3344456788885431 2346778899999999998753 346788899998853
No 136
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=59.09 E-value=33 Score=23.85 Aligned_cols=61 Identities=20% Similarity=0.160 Sum_probs=42.4
Q ss_pred CCCcccccccCCCCchHHHHHHHHhhCCceEEecCC--------cCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 41 PWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS--------FPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 41 ~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~--------~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
.--++||+..- .....+.+++.+||+|..+.+.. .=.|...+++.|+.++.. ++..+.+|+
T Consensus 8 ~~l~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 77 (116)
T 2fy1_A 8 GKLFIGGLNRE--TNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKA 77 (116)
T ss_dssp CEEEEECCTTT--CCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSB
T ss_pred CEEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 44578888542 12346788899999998887643 236778899999999864 555666654
No 137
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=58.52 E-value=22 Score=24.56 Aligned_cols=61 Identities=16% Similarity=0.068 Sum_probs=41.4
Q ss_pred CCCcccccccCCCCchHHHHHHHHhhCCceEEecCCc---------CEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 41 PWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSF---------PVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 41 ~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~---------~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
.--++||+..- .-...+.+++.+||+|..+++-.. =.|...+++.|+.++.. ++..+.+|+
T Consensus 16 ~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (115)
T 2dgo_A 16 FHVFVGDLSPE--ITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 86 (115)
T ss_dssp EEEEEESCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred cEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34568887542 123467888999999988876422 26778899999999864 444555543
No 138
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=58.37 E-value=13 Score=23.34 Aligned_cols=57 Identities=11% Similarity=0.076 Sum_probs=36.8
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCCc---------CEEEecCHHHHHHHHHhcCcccCCC
Q 043529 44 IIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSF---------PVVVGSSVEMAEAFLKTHDALFSYR 102 (307)
Q Consensus 44 ilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~---------~~Vvv~~~e~~~evl~~~~~~f~~R 102 (307)
++||++.-. ....+.++..+||+|..+.+... =.|...+++.++.++......+.+|
T Consensus 4 ~v~nlp~~~--t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~ 69 (77)
T 1uaw_A 4 FIGGLSWQT--TQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSK 69 (77)
T ss_dssp EEESCCSSC--CSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSC
T ss_pred EEeCCCCCC--CHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCE
Confidence 567775321 23357788899999888776322 2466678999999887544344444
No 139
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=58.16 E-value=25 Score=23.33 Aligned_cols=60 Identities=22% Similarity=0.173 Sum_probs=41.6
Q ss_pred CCcccccccCCCCchHHHHHHHHhhCCceEEecCC------------cCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 42 WPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS------------FPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 42 lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~------------~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
--++||+..- -....+.+++.+||+|..+++.. .=.|...+++.|+.++.. ++..+.+|+
T Consensus 7 ~l~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (98)
T 2cpf_A 7 GLFIKNLNFS--TTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHK 79 (98)
T ss_dssp CEEEESCCTT--CCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEE
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 4578888543 12346788889999998887641 236778899999999875 555555553
No 140
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=57.96 E-value=37 Score=24.70 Aligned_cols=60 Identities=17% Similarity=0.142 Sum_probs=41.9
Q ss_pred CCcccccccCCCCchHHHHHHHHhhCCceEEecCC----cCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 42 WPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS----FPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 42 lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~----~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
--++||++.-. -...+.+++.+||+|..+++.. .-.|-..+++.++.++.. ++..+.+|+
T Consensus 75 ~l~V~nl~~~~--t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 139 (150)
T 2i2y_A 75 KVYVGNLGNNG--NKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCR 139 (150)
T ss_dssp EEEEESCCSCC--SCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSC
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 44688875421 2345778889999999988743 336778899999998863 555565554
No 141
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.89 E-value=25 Score=24.28 Aligned_cols=61 Identities=18% Similarity=0.104 Sum_probs=41.9
Q ss_pred CCCcccccccCCCCchHHHHHHHHhhCCceEEecCCc---------CEEEecCHHHHHHHHHhcCcccCCCC
Q 043529 41 PWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSF---------PVVVGSSVEMAEAFLKTHDALFSYRP 103 (307)
Q Consensus 41 ~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~---------~~Vvv~~~e~~~evl~~~~~~f~~R~ 103 (307)
.--++||+..- .-...+.+++.+||+|..+++-.. =.|...+++.++.++......+.+|+
T Consensus 18 ~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~ 87 (116)
T 2cqd_A 18 TKIFVGGLPYH--TTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRK 87 (116)
T ss_dssp SEEEEECCCSS--CCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEE
T ss_pred CEEEEeCCCCC--CCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEE
Confidence 34568887542 123467888899999999887542 26778999999999875443454443
No 142
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.43 E-value=40 Score=22.49 Aligned_cols=62 Identities=16% Similarity=0.146 Sum_probs=42.4
Q ss_pred CCCCcccccccCCCCchHHHHHHHHhhCCceEEecCCc---------CEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 40 KPWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSF---------PVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 40 ~~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~---------~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
..--++||++.- .....+.+++.+||+|..+++... =.|...+++.|+.++.. ++..+.+|+
T Consensus 12 ~~~l~v~nLp~~--~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 1x5s_A 12 EGKLFVGGLSFD--TNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQ 83 (102)
T ss_dssp CSEEEEESCCTT--CCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCC
T ss_pred CCEEEEECCCCC--CCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 344578887532 123457788899999988887432 25777899999998853 555566654
No 143
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.32 E-value=25 Score=23.71 Aligned_cols=67 Identities=16% Similarity=0.184 Sum_probs=44.1
Q ss_pred CCCCCCCCCCcccccccCCCCchHHHHHHHHhhCCceEEecCC----------cCEEEecCHHHHHHHHHhcCcccCCCC
Q 043529 34 NLPPGPKPWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS----------FPVVVGSSVEMAEAFLKTHDALFSYRP 103 (307)
Q Consensus 34 ~lpPgP~~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~----------~~~Vvv~~~e~~~evl~~~~~~f~~R~ 103 (307)
+.|+.|..--++||+..-. -...+.+++.+|| |..+++-. .=.|...+++.++.++.-++..+.+|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~--t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 85 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDV--TEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKR 85 (104)
T ss_dssp CCCSSSCEEEEEESCCSSC--CHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEE
T ss_pred CCCCCCCCEEEEeCCCCcC--CHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcE
Confidence 3344444455788885431 2345778889999 98888632 125778999999999854555565554
No 144
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=57.22 E-value=33 Score=22.92 Aligned_cols=58 Identities=19% Similarity=0.281 Sum_probs=39.5
Q ss_pred Cccccccc-CCCCchHHHHHHHHhhCCceEEecCC-cCEEEecCHHHHHHHHH-hcCcccCCC
Q 043529 43 PIIGNLNL-IGPLPYRSIHALSEKYGPIMQLKFGS-FPVVVGSSVEMAEAFLK-THDALFSYR 102 (307)
Q Consensus 43 PilGn~~~-l~~~~~~~~~~~~~kYG~i~~~~lg~-~~~Vvv~~~e~~~evl~-~~~~~f~~R 102 (307)
-++||+.. - .-...+.+++.+||+|..+.+.. .=.|...+++.|+.++. -++..+.+|
T Consensus 25 l~V~nLp~~~--~t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (97)
T 2xnq_A 25 LFIGNLPLKN--VSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEXESQEMNFGK 85 (97)
T ss_dssp EEEESCCSSC--CCHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHHHTTSEETTE
T ss_pred EEEeCCCccc--CCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 46788753 2 12346788899999999988743 34677789999999886 334344343
No 145
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.18 E-value=25 Score=23.65 Aligned_cols=61 Identities=20% Similarity=0.055 Sum_probs=41.5
Q ss_pred CCCcccccccCCCCchHHHHHHHHhhCCceEEecCC-------cCEEEecCHHHHHHHHH-hcCcccCCCC
Q 043529 41 PWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS-------FPVVVGSSVEMAEAFLK-THDALFSYRP 103 (307)
Q Consensus 41 ~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~-------~~~Vvv~~~e~~~evl~-~~~~~f~~R~ 103 (307)
.--++||++.- --...+.+++.+||+|..+++.. .=.|...+++.|+.++. -++..+.+|+
T Consensus 16 ~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cqi_A 16 RTLYVGNLSRD--VTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKE 84 (103)
T ss_dssp CEEEEESCCTT--CCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CEEEEeCCCcc--CCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCe
Confidence 34578887542 12446788899999998887633 23677889999999886 3555555543
No 146
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.08 E-value=10 Score=26.37 Aligned_cols=59 Identities=20% Similarity=0.207 Sum_probs=40.7
Q ss_pred CcccccccCCCCchHHHHHHHHhhCCceEEecCC---------cCEEEecCHHHHHHHHHhcCcccCCCC
Q 043529 43 PIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---------FPVVVGSSVEMAEAFLKTHDALFSYRP 103 (307)
Q Consensus 43 PilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---------~~~Vvv~~~e~~~evl~~~~~~f~~R~ 103 (307)
-++||+..- .-...+.+++.+||+|..+++-. .=.|...+++.++.++..++..+.+|+
T Consensus 30 l~V~nLp~~--~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~ 97 (116)
T 1x4b_A 30 LFIGGLSFE--TTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRV 97 (116)
T ss_dssp EEEECCTTC--CCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEE
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEE
Confidence 367777532 12346788899999998887632 225777899999999976555555553
No 147
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=57.07 E-value=33 Score=23.60 Aligned_cols=60 Identities=12% Similarity=-0.022 Sum_probs=40.9
Q ss_pred CCcccccccCCCCchHHHHHHHHhhCCceEEecCCc---------CEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 42 WPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSF---------PVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 42 lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~---------~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
--++||+..-. -...+.+++.+||+|..+++-.. =.|...+++.++.++.. ++..+.+|+
T Consensus 27 ~l~V~nLp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 96 (115)
T 2cpz_A 27 NLFIYHLPQEF--GDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKR 96 (115)
T ss_dssp CEEEESCCSSC--CHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 34688875421 23567888999999988776322 25778899999999854 555555543
No 148
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.69 E-value=41 Score=22.48 Aligned_cols=65 Identities=17% Similarity=0.107 Sum_probs=44.0
Q ss_pred CCCCCCCcccccccCCCCchHHHHHHHHh-hCCceEEecCC--------cCEEEecCHHHHHHHHHh-cCcc-cCCCC
Q 043529 37 PGPKPWPIIGNLNLIGPLPYRSIHALSEK-YGPIMQLKFGS--------FPVVVGSSVEMAEAFLKT-HDAL-FSYRP 103 (307)
Q Consensus 37 PgP~~lPilGn~~~l~~~~~~~~~~~~~k-YG~i~~~~lg~--------~~~Vvv~~~e~~~evl~~-~~~~-f~~R~ 103 (307)
+.|..--++||+..-. -...+.+++.+ ||+|..+++-. .=.|...+++.|+.++.. ++.. +.+|+
T Consensus 6 ~~~~~~l~V~nLp~~~--t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~ 81 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDV--DDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKP 81 (104)
T ss_dssp SSCCCCEEEECCCTTC--CHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSC
T ss_pred CCCCcEEEEeCCCCCC--CHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEe
Confidence 4454556788886431 23457788888 99998887632 236778899999999873 4444 56665
No 149
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=56.65 E-value=21 Score=24.24 Aligned_cols=59 Identities=15% Similarity=0.097 Sum_probs=39.8
Q ss_pred CCcccccccCCCCchHHHHHHHHhhCCceEEecCC--------cCEEEecCHHHHHHHHHh-cCcccCCC
Q 043529 42 WPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS--------FPVVVGSSVEMAEAFLKT-HDALFSYR 102 (307)
Q Consensus 42 lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~--------~~~Vvv~~~e~~~evl~~-~~~~f~~R 102 (307)
--++||+..- .....+.+++.+||+|..+++-. .=.|-..+++.|+.++.. ++..+.+|
T Consensus 31 ~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 98 (107)
T 3ulh_A 31 KLLVSNLDFG--VSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGR 98 (107)
T ss_dssp EEEEESCCTT--CCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 3467777532 12345778889999998877541 236778899999999874 55555444
No 150
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=56.36 E-value=21 Score=23.46 Aligned_cols=58 Identities=17% Similarity=0.182 Sum_probs=38.0
Q ss_pred cccccccCCCCchHHHHHHHHhhC--CceEEecCCc---------CEEEecCHHHHHHHHH-hcCcccCCCC
Q 043529 44 IIGNLNLIGPLPYRSIHALSEKYG--PIMQLKFGSF---------PVVVGSSVEMAEAFLK-THDALFSYRP 103 (307)
Q Consensus 44 ilGn~~~l~~~~~~~~~~~~~kYG--~i~~~~lg~~---------~~Vvv~~~e~~~evl~-~~~~~f~~R~ 103 (307)
++||+..-. ....+.+++.+|| +|..+++... =.|...+++.++.++. -++..+.+|+
T Consensus 5 ~V~nL~~~~--t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 74 (90)
T 3p5t_L 5 YIGNLTWWT--TDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQN 74 (90)
T ss_dssp EEESCCTTC--CHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCC
T ss_pred EEeCCCCCC--CHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEE
Confidence 577775421 2346778899999 8887775321 2677789999999884 3455565554
No 151
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=55.88 E-value=32 Score=23.43 Aligned_cols=57 Identities=11% Similarity=0.041 Sum_probs=40.4
Q ss_pred CcccccccCCCCchHHHHHHHHhhCCceEEecC--CcCEEEecCHHHHHHHHHh-cCcccCC
Q 043529 43 PIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFG--SFPVVVGSSVEMAEAFLKT-HDALFSY 101 (307)
Q Consensus 43 PilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg--~~~~Vvv~~~e~~~evl~~-~~~~f~~ 101 (307)
-++||+..- .-...+.+++.+||+|..+++. +.=.|...+++.|+.++.. ++..+.+
T Consensus 18 l~V~nLp~~--~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 77 (108)
T 1x4c_A 18 VVVSGLPPS--GSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRS 77 (108)
T ss_dssp EEEESCCSS--CCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHHHCcCCccC
Confidence 467887532 2345678889999999888863 3457778899999999874 4444544
No 152
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=55.55 E-value=19 Score=23.14 Aligned_cols=64 Identities=16% Similarity=0.006 Sum_probs=40.9
Q ss_pred CCCCCCCcccccccCCCCchHHHHHHHHhhCCceEEecCCc---------CEEEecCHHHHHHHHHh-cCcccCCC
Q 043529 37 PGPKPWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSF---------PVVVGSSVEMAEAFLKT-HDALFSYR 102 (307)
Q Consensus 37 PgP~~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~---------~~Vvv~~~e~~~evl~~-~~~~f~~R 102 (307)
+.|..--++||++.-. ....+.++..+||+|..+++... -.|...+++.++.++.. ++..+.+|
T Consensus 2 ~~~~~~l~v~nlp~~~--t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 75 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGT--TDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQ 75 (85)
T ss_dssp CCCCCEEEEESCCTTC--CHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred CCCCcEEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeE
Confidence 3344455788875421 23457778889999988876322 25778899999988763 33334333
No 153
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=55.34 E-value=28 Score=23.36 Aligned_cols=59 Identities=15% Similarity=0.236 Sum_probs=39.2
Q ss_pred CCcccccccCCCCchHHHHHHHHhhCCceEEecCC---------cCEEEecCHHHHHHHHHh-cCcccCCC
Q 043529 42 WPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---------FPVVVGSSVEMAEAFLKT-HDALFSYR 102 (307)
Q Consensus 42 lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---------~~~Vvv~~~e~~~evl~~-~~~~f~~R 102 (307)
--++||+..- .....+.+++.+||+|..+++.. .=.|...+++.++.++.. ++..+.+|
T Consensus 10 ~l~V~nlp~~--~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (104)
T 1p1t_A 10 SVFVGNIPYE--ATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGR 78 (104)
T ss_dssp CEEEESCCTT--SCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSS
T ss_pred EEEEeCCCCc--CCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 3467777532 12345788889999998877632 226777899999999863 44444444
No 154
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.22 E-value=30 Score=22.63 Aligned_cols=61 Identities=18% Similarity=0.270 Sum_probs=42.2
Q ss_pred CCCcccccccCCCCchHHHHHHHHhhCCceEEecCC-cCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 41 PWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS-FPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 41 ~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~-~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
.--++||++.- .....+.+++.+||+|..+.+.. .=.|-..+++.++.++.. ++..+.+|+
T Consensus 11 ~~l~V~nLp~~--~t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 73 (92)
T 2dgt_A 11 TKLHVGNISPT--CTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKR 73 (92)
T ss_dssp EEEEEESCCSS--CCHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEETTEE
T ss_pred CEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 34578888542 12456788899999999888754 345667889999998863 555555543
No 155
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=54.40 E-value=27 Score=26.00 Aligned_cols=57 Identities=16% Similarity=0.289 Sum_probs=38.6
Q ss_pred cccccccCCCCchHHHHHHHHhhC--CceEEecC-----C----cCEEEecCHHHHHHHHHh-cCcccCCC
Q 043529 44 IIGNLNLIGPLPYRSIHALSEKYG--PIMQLKFG-----S----FPVVVGSSVEMAEAFLKT-HDALFSYR 102 (307)
Q Consensus 44 ilGn~~~l~~~~~~~~~~~~~kYG--~i~~~~lg-----~----~~~Vvv~~~e~~~evl~~-~~~~f~~R 102 (307)
++||+..- .-...+.+++.+|| +|..+++. + .=.|...+++.++.++.. ++..+.+|
T Consensus 59 fVgnLp~~--~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr 127 (156)
T 3n9u_C 59 YVGSFSWW--TTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGE 127 (156)
T ss_dssp EEECCCTT--CCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTE
T ss_pred EEeCCCCC--CCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 45555322 12456788899999 89888762 1 137888999999999976 55455444
No 156
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=54.18 E-value=35 Score=22.54 Aligned_cols=58 Identities=16% Similarity=0.257 Sum_probs=39.5
Q ss_pred CcccccccCCCCchHHHHHHHHhhCCceEEecCC---------cCEEEecCHHHHHHHHHh-cCcccCCC
Q 043529 43 PIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---------FPVVVGSSVEMAEAFLKT-HDALFSYR 102 (307)
Q Consensus 43 PilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---------~~~Vvv~~~e~~~evl~~-~~~~f~~R 102 (307)
-++||+..- .....+.+++.+||+|..+++-. .=.|-..+++.|+.++.. ++..+.+|
T Consensus 5 l~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 72 (96)
T 2x1f_A 5 VYLGSIPYD--QTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSR 72 (96)
T ss_dssp EEEESCCTT--CCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred EEEECCCCC--CCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 467777532 12346788899999999988732 236778899999998853 44445444
No 157
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=53.30 E-value=36 Score=23.27 Aligned_cols=60 Identities=18% Similarity=0.271 Sum_probs=40.9
Q ss_pred CCcccccccCCCCchHHHHHHHHhhCCceEEecCC---------cCEEEecCHHHHHHHHH-hcCcccCCCC
Q 043529 42 WPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---------FPVVVGSSVEMAEAFLK-THDALFSYRP 103 (307)
Q Consensus 42 lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---------~~~Vvv~~~e~~~evl~-~~~~~f~~R~ 103 (307)
--++||+..- -....+.+++.+||+|..+++.. .-.|...+++.|+.++. -++..+.+|+
T Consensus 28 ~l~V~nLp~~--~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 97 (108)
T 2jrs_A 28 RLYVGSLHFN--ITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 97 (108)
T ss_dssp EEEEECCCSS--CCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 3468887542 12345778889999998887631 23678899999999986 3555555554
No 158
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.25 E-value=41 Score=21.42 Aligned_cols=59 Identities=12% Similarity=0.121 Sum_probs=40.3
Q ss_pred CCcccccccCCCCchHHHHHHHHhhCCceEEecCC---cCEEEecCHHHHHHHHHh--cCcccCCC
Q 043529 42 WPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---FPVVVGSSVEMAEAFLKT--HDALFSYR 102 (307)
Q Consensus 42 lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---~~~Vvv~~~e~~~evl~~--~~~~f~~R 102 (307)
--++||++.- .....+.++..+||+|..+++.. .-.|-..+++.++.++.. ++..+.+|
T Consensus 14 ~l~V~~l~~~--~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~ 77 (85)
T 2ytc_A 14 TLYVGGLGDT--ITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGR 77 (85)
T ss_dssp CEEEECCTTT--SCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTE
T ss_pred EEEEcCCCCC--CCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCC
Confidence 4467887532 22456778899999998887643 346777899999999874 33344443
No 159
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.22 E-value=45 Score=21.60 Aligned_cols=63 Identities=21% Similarity=0.178 Sum_probs=42.8
Q ss_pred CCCCCcccccccCCCCchHHHHHHHHhhCCceEEecCC-cCEEEecCHHHHHHHHH-hcCcccCCCC
Q 043529 39 PKPWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS-FPVVVGSSVEMAEAFLK-THDALFSYRP 103 (307)
Q Consensus 39 P~~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~-~~~Vvv~~~e~~~evl~-~~~~~f~~R~ 103 (307)
|..--++||+..- .....+.+++.+||+|..+++-. .=.|-..+++.++.++. -++..+.+|+
T Consensus 7 ~~~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 71 (90)
T 2dnq_A 7 GMVKLFIGNLPRE--ATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVN 71 (90)
T ss_dssp CCEEEEEESCCSS--CCHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCeEEEEeCCCCC--CCHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHHhcCCccCCcE
Confidence 3344578888542 12346788899999998888643 34677889999999885 3444555554
No 160
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=52.15 E-value=21 Score=25.02 Aligned_cols=58 Identities=14% Similarity=0.212 Sum_probs=39.0
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCC---------cCEEEecCHHHHHHHHHhcCcccCCCC
Q 043529 44 IIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---------FPVVVGSSVEMAEAFLKTHDALFSYRP 103 (307)
Q Consensus 44 ilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---------~~~Vvv~~~e~~~evl~~~~~~f~~R~ 103 (307)
++||+..- --...+.+++.+||+|..+++.. .=.|...+++.++.++.-++..+.+|+
T Consensus 40 ~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 106 (124)
T 2jwn_A 40 YVGNVDYG--STAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRT 106 (124)
T ss_dssp EEEEECTT--CCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEE
T ss_pred EEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeE
Confidence 46665432 12456788899999998887632 126788999999999844555555543
No 161
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=52.06 E-value=25 Score=23.13 Aligned_cols=60 Identities=18% Similarity=0.180 Sum_probs=40.7
Q ss_pred CCcccccccCCCCchHHHHHHHHhhCCceEEecCC--------cCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 42 WPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS--------FPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 42 lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~--------~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
--++||++.- -....+.+++.+||+|..+++.. .=.|...+++.++.++.. ++..+.+|+
T Consensus 18 ~l~v~nlp~~--~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (95)
T 2ywk_A 18 TVFVGNLEAR--VREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRP 86 (95)
T ss_dssp EEEEECCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEE
T ss_pred EEEEECCCCC--CCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCE
Confidence 4467887542 12446788899999998887642 236777899999998863 554555443
No 162
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.97 E-value=25 Score=23.55 Aligned_cols=63 Identities=19% Similarity=0.110 Sum_probs=42.5
Q ss_pred CCCCCcccccccCCCCchHHHHHHHHhhCCceEEecCCc---------CEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 39 PKPWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSF---------PVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 39 P~~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~---------~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
|..--++||+..-. ....+.+++.+||+|..+++... =.|...+++.|+.++.. ++..+.+|+
T Consensus 11 ~~~~l~V~nLp~~~--t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 2cqb_A 11 TKRVLYVGGLAEEV--DDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 83 (102)
T ss_dssp CCSCEEEESCCSSC--CHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCEEEEeCCCCCC--CHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 34455788885431 24567888899999988887321 25667899999998853 555555543
No 163
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.83 E-value=45 Score=22.26 Aligned_cols=60 Identities=20% Similarity=0.117 Sum_probs=41.9
Q ss_pred CCcccccccCCCCchHHHHHHHHhhCCceEEecCC---------cCEEEecCHHHHHHHHH-hcCcccCCCC
Q 043529 42 WPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---------FPVVVGSSVEMAEAFLK-THDALFSYRP 103 (307)
Q Consensus 42 lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---------~~~Vvv~~~e~~~evl~-~~~~~f~~R~ 103 (307)
--++||+..-. -...+.+++.+||+|..+.+.. .=.|...+++.|+.++. -++..+.+|+
T Consensus 15 ~l~V~nLp~~~--t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2dnm_A 15 TLKVDNLTYRT--SPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRE 84 (103)
T ss_dssp EEEEESCCTTC--CHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBC
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 44688875431 2346788899999999988742 23677889999999887 3555666654
No 164
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.41 E-value=22 Score=24.54 Aligned_cols=56 Identities=9% Similarity=0.023 Sum_probs=37.4
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCC---------cCEEEecCHHHHHHHHHhcCcccCC
Q 043529 44 IIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---------FPVVVGSSVEMAEAFLKTHDALFSY 101 (307)
Q Consensus 44 ilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---------~~~Vvv~~~e~~~evl~~~~~~f~~ 101 (307)
++||+..- --...+.+++.+||+|..+++.. .=.|...+++.++.++.-++..+.+
T Consensus 29 ~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g 93 (114)
T 2cq4_A 29 FCMQLAAR--IRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLG 93 (114)
T ss_dssp EEESCCTT--CCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETT
T ss_pred EEeCCCCC--CCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCC
Confidence 56776432 12346788899999999988741 2257778888888888445544443
No 165
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=50.10 E-value=39 Score=22.52 Aligned_cols=58 Identities=19% Similarity=0.215 Sum_probs=38.9
Q ss_pred CcccccccCCCCchHHHHHHHHhhCCceEEecCC---cCEEEecCHHHHHHHHHh-cCcccCCC
Q 043529 43 PIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---FPVVVGSSVEMAEAFLKT-HDALFSYR 102 (307)
Q Consensus 43 PilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---~~~Vvv~~~e~~~evl~~-~~~~f~~R 102 (307)
-++||+..- .-...+.+++.+||+|..+++.. .=.|...+.+.+..++.. ++..+.+|
T Consensus 30 l~V~nlp~~--~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 91 (101)
T 2la4_A 30 AYIGNIPHF--ATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGR 91 (101)
T ss_dssp EEEESCCTT--CCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred EEEcCCCcc--cCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 467777532 12456778899999999888752 235667789989888754 44444444
No 166
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=49.91 E-value=55 Score=23.43 Aligned_cols=59 Identities=20% Similarity=0.215 Sum_probs=41.2
Q ss_pred CcccccccCCCCchHHHHHHHHhhCCceEEecCC---------cCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 43 PIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---------FPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 43 PilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---------~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
-++||+..- .....+.+++.+||+|..+.+.. .=.|...+++.++.++.. ++..+.+|+
T Consensus 50 l~V~nLp~~--~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 118 (135)
T 2lea_A 50 LKVDNLTYR--TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 118 (135)
T ss_dssp EEEECCCSS--CHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSC
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 467777432 23456788899999999988743 237888999999999864 444555554
No 167
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=49.78 E-value=36 Score=23.31 Aligned_cols=59 Identities=19% Similarity=0.319 Sum_probs=40.5
Q ss_pred CcccccccCCCCchHHHHHHHHhhCCceEEecC-CcCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 43 PIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFG-SFPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 43 PilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg-~~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
-++||+..- .-...+.+++.+||+|..+.+. +.-.|...+++.|+.++.. ++..+.+|+
T Consensus 34 l~V~nLp~~--~t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 94 (108)
T 2jvo_A 34 LFVRPFPLD--VQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFANQP 94 (108)
T ss_dssp EEECSSCTT--CCHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEECCCCC--CCHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 367777432 1234678889999999888764 3456777899999998864 555555443
No 168
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.69 E-value=49 Score=22.81 Aligned_cols=63 Identities=14% Similarity=0.155 Sum_probs=42.9
Q ss_pred CCCCCcccccccCCCCchHHHHHHHHhhCCceEEecCC---cCEEEecCHHHHHHHHHh-c--CcccCCCC
Q 043529 39 PKPWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---FPVVVGSSVEMAEAFLKT-H--DALFSYRP 103 (307)
Q Consensus 39 P~~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---~~~Vvv~~~e~~~evl~~-~--~~~f~~R~ 103 (307)
|..--++||+..-. -...+.+++.+||+|-.+++.. .=.|-..+++.|..++.. + +..+.+|+
T Consensus 15 ~~~~LfV~nLp~~v--te~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~ 83 (105)
T 1sjq_A 15 PSRVIHIRKLPIDV--TEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 83 (105)
T ss_dssp CCCEEEECSCCTTS--CHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEE
T ss_pred CCCEEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 33446789986431 2345778899999999988642 347788899999998863 2 23455665
No 169
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.44 E-value=53 Score=22.25 Aligned_cols=60 Identities=15% Similarity=0.121 Sum_probs=41.3
Q ss_pred CCcccccccCCCCchHHHHHHHHhhCCceEEecCC---cCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 42 WPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---FPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 42 lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
--++||+..- .-...+.+++.+||+|..+++.. .=.|...+++.|..++.. ++..+.+|+
T Consensus 27 ~l~V~nl~~~--~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 90 (109)
T 1x4g_A 27 TVYCGGIASG--LTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHV 90 (109)
T ss_dssp EEEEECCSSC--CCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 4468887542 12346778889999999888642 346778899999998854 555555543
No 170
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=49.19 E-value=56 Score=25.71 Aligned_cols=59 Identities=19% Similarity=0.184 Sum_probs=42.5
Q ss_pred Cccccccc-CCCCchHHHHHHHHhhCCceEEecC----CcCEEEecCHHHHHHHHH-hcCcccCCCC
Q 043529 43 PIIGNLNL-IGPLPYRSIHALSEKYGPIMQLKFG----SFPVVVGSSVEMAEAFLK-THDALFSYRP 103 (307)
Q Consensus 43 PilGn~~~-l~~~~~~~~~~~~~kYG~i~~~~lg----~~~~Vvv~~~e~~~evl~-~~~~~f~~R~ 103 (307)
-++||+.. -. -...+.+++.+||+|..+++- +.=.|...+++.|+.++. -++..+.+|+
T Consensus 37 l~V~nLp~~~~--te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 101 (229)
T 2adc_A 37 LLVSNLNPERV--TPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKP 101 (229)
T ss_dssp EEEESCCTTTC--CHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSB
T ss_pred EEEeCCCcccC--CHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 36777754 21 235678889999999998875 234788899999999985 4566666665
No 171
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.14 E-value=28 Score=23.85 Aligned_cols=60 Identities=12% Similarity=0.004 Sum_probs=40.3
Q ss_pred CCcccccccCCCCchHHHHHHHHhhCCce--------EEecCC---------cCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 42 WPIIGNLNLIGPLPYRSIHALSEKYGPIM--------QLKFGS---------FPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 42 lPilGn~~~l~~~~~~~~~~~~~kYG~i~--------~~~lg~---------~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
--++||+..- .-...+.+++.+||+|. .+++.. .=.|...+++.|+.++.. ++..+.+|+
T Consensus 17 ~l~V~nLp~~--~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 94 (113)
T 2cpe_A 17 AIYVQGLNDS--VTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSK 94 (113)
T ss_dssp EEEEECCCTT--CCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEcCCCCC--CCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCE
Confidence 3467887532 12346788899999987 355432 226778899999999874 565666554
No 172
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=48.96 E-value=38 Score=22.65 Aligned_cols=57 Identities=14% Similarity=0.091 Sum_probs=38.7
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCCc----------CEEEecCHHHHHHHHHhcCcccCCCC
Q 043529 44 IIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSF----------PVVVGSSVEMAEAFLKTHDALFSYRP 103 (307)
Q Consensus 44 ilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~----------~~Vvv~~~e~~~evl~~~~~~f~~R~ 103 (307)
++||+..-. -...+.+++.+|| |..+++... =.|...+.+.++.++.-++..+.+|+
T Consensus 23 ~V~nLp~~~--t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~ 89 (100)
T 2j76_E 23 FLGNLPYDV--TEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRR 89 (100)
T ss_dssp EESCCSSCC--SSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBC
T ss_pred EEeCCCCCC--CHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeE
Confidence 577775421 1225777888999 988887432 25778899999999855555665554
No 173
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=48.88 E-value=39 Score=24.82 Aligned_cols=61 Identities=25% Similarity=0.184 Sum_probs=42.7
Q ss_pred CCCcccccccCCCCchHHHHHHHHhhCCceEEecCC---------cCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 41 PWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---------FPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 41 ~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---------~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
..-+|||+..- .-...+.+++.+||+|..+++.. .=.|...+++.|+.++.. ++..+.+++
T Consensus 40 ~~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 110 (156)
T 1h2v_Z 40 CTLYVGNLSFY--TTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRI 110 (156)
T ss_dssp CEEEEESCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEE
T ss_pred CEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 44578887532 12456888899999999988721 126788999999999874 555565554
No 174
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=48.71 E-value=19 Score=24.77 Aligned_cols=60 Identities=13% Similarity=0.174 Sum_probs=39.9
Q ss_pred CCcccccccCCCCchHHHHHHHHhhCCceEEecCC-------cCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 42 WPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS-------FPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 42 lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~-------~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
--++||+..- .-...+.+++.+||+|..+++.. .=.|...+++.|+.++.. ++..+.+|+
T Consensus 31 ~l~V~nLp~~--~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 98 (109)
T 2err_A 31 RLHVSNIPFR--FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRK 98 (109)
T ss_dssp EEEEESCCTT--CCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEE
T ss_pred EEEEECCCCc--CCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 3467777432 12346788899999998887642 236777888999988863 554555543
No 175
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=48.61 E-value=60 Score=21.93 Aligned_cols=60 Identities=20% Similarity=0.177 Sum_probs=40.7
Q ss_pred CCcccccccCCCCchHHHHHHHHhhCCceEEecCC------cCEEEecCHHHHHHHHH-hcCcccCCCC
Q 043529 42 WPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS------FPVVVGSSVEMAEAFLK-THDALFSYRP 103 (307)
Q Consensus 42 lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~------~~~Vvv~~~e~~~evl~-~~~~~f~~R~ 103 (307)
--++||+..- .-...+.+++.+||+|..+++-. .=.|...+++.|+.++. -++..+.+|+
T Consensus 24 ~l~V~nLp~~--~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 90 (109)
T 1x4a_A 24 RIYVGNLPPD--IRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYR 90 (109)
T ss_dssp EEEEESCCTT--CCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 3467887542 12456888999999998877632 22688889999999984 3454555543
No 176
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=47.97 E-value=49 Score=22.59 Aligned_cols=65 Identities=17% Similarity=0.068 Sum_probs=43.7
Q ss_pred CCCCCCCccccccc-CCCCchHHHHHHHHhhCCceEEecCC---cCEEEecCHHHHHHHHHh---cCcccCCCC
Q 043529 37 PGPKPWPIIGNLNL-IGPLPYRSIHALSEKYGPIMQLKFGS---FPVVVGSSVEMAEAFLKT---HDALFSYRP 103 (307)
Q Consensus 37 PgP~~lPilGn~~~-l~~~~~~~~~~~~~kYG~i~~~~lg~---~~~Vvv~~~e~~~evl~~---~~~~f~~R~ 103 (307)
+.|...-++||+.. -. -...+.+++.+||.|-.+++-. .=.|-..+++.|..++.. ....+.+|+
T Consensus 12 ~~p~~~l~V~nLp~~~~--te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 83 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKN--LRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKP 83 (102)
T ss_dssp CCCCCEEEEESCCCSSS--HHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CCCCCEEEEeCCCCCcC--CHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcE
Confidence 44544567899865 21 2345778889999999998753 237888899999988763 222355554
No 177
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=47.95 E-value=12 Score=25.96 Aligned_cols=61 Identities=13% Similarity=0.058 Sum_probs=41.9
Q ss_pred CCCcccccccCCCCchHHHH---HHHHhhCCceEEecCC------------cCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 41 PWPIIGNLNLIGPLPYRSIH---ALSEKYGPIMQLKFGS------------FPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 41 ~lPilGn~~~l~~~~~~~~~---~~~~kYG~i~~~~lg~------------~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
..-++||++.-.. ...+. +++.+||+|..+.+-. .=.|...+++.|+.++.. ++..+.+|+
T Consensus 16 ~~l~V~nLp~~~~--~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 16 NLVFVVGLSQRLA--DPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp SCEEEEEECTTTC--CHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CEEEEECCCCCCC--HHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 3457888864311 22455 7889999998887642 235777899999999875 666666664
No 178
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=47.70 E-value=25 Score=26.67 Aligned_cols=61 Identities=20% Similarity=0.201 Sum_probs=42.2
Q ss_pred CCCcccccccCCCCchHHHHHHHHhhCCceEEecCC---------cCEEEecCHHHHHHHHHhcCcccCCCC
Q 043529 41 PWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---------FPVVVGSSVEMAEAFLKTHDALFSYRP 103 (307)
Q Consensus 41 ~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---------~~~Vvv~~~e~~~evl~~~~~~f~~R~ 103 (307)
.--++||++.-. -...+.+++.+||+|..+++-. .=.|...+++.|+.++..++..+.+|+
T Consensus 14 ~~l~V~nLp~~~--te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~ 83 (196)
T 1l3k_A 14 RKLFIGGLSFET--TDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRV 83 (196)
T ss_dssp GEEEEESCCTTC--CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEE
T ss_pred CEEEEeCCCCCC--CHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEE
Confidence 345788885421 2346788899999998877532 236888999999999976555554443
No 179
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=47.69 E-value=54 Score=21.90 Aligned_cols=59 Identities=20% Similarity=0.094 Sum_probs=40.0
Q ss_pred CCCcccccccCCCCchHHHHHHHHhhCCceEEecCC--------cCEEEecCHHHHHHHHHh-cCcccCC
Q 043529 41 PWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS--------FPVVVGSSVEMAEAFLKT-HDALFSY 101 (307)
Q Consensus 41 ~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~--------~~~Vvv~~~e~~~evl~~-~~~~f~~ 101 (307)
.--++||+..-. ....+.+++.+||+|..+++-. .=.|...+++.|+.++.. ++..+.+
T Consensus 16 ~~l~v~nLp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 83 (105)
T 2dnh_A 16 RKLFVGMLNKQQ--SEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMP 83 (105)
T ss_dssp CEEEEESCCTTC--CHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCT
T ss_pred CEEEEeCCCCCC--CHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 345788885421 2345788899999998887642 235777899999998863 4444444
No 180
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=46.11 E-value=36 Score=26.53 Aligned_cols=64 Identities=17% Similarity=0.113 Sum_probs=41.4
Q ss_pred CCCCCCCcccccccCCCCchHHHHHHHHhhCCceEEecCC---------cCEEEecCHHHHHHHHHh-cCcccCCC
Q 043529 37 PGPKPWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---------FPVVVGSSVEMAEAFLKT-HDALFSYR 102 (307)
Q Consensus 37 PgP~~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---------~~~Vvv~~~e~~~evl~~-~~~~f~~R 102 (307)
..|..--++||+..-. -...+.+++.+||+|..+++-. .=.|...+++.++.++.. ++..+.+|
T Consensus 12 ~~p~~tlfVgnLp~~~--te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~ 85 (213)
T 4f02_A 12 SYPMASLYVGDLHPDV--TEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK 85 (213)
T ss_dssp ---CCEEEEESCCTTC--CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCcEEEEeCCCCCC--CHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCc
Confidence 3444455889985421 2446788899999998887621 227888999999999864 33344343
No 181
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=45.92 E-value=25 Score=27.26 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=40.0
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC--------CcCEEEecCHHHHHHHHHhcCcccCCCC
Q 043529 44 IIGNLNLIGPLPYRSIHALSEKYGPIMQLKFG--------SFPVVVGSSVEMAEAFLKTHDALFSYRP 103 (307)
Q Consensus 44 ilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg--------~~~~Vvv~~~e~~~evl~~~~~~f~~R~ 103 (307)
++||++.- .....+.+++.+||+|..+++. +.=.|...+++.|+.++...+..+.+|+
T Consensus 113 ~V~nLp~~--~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~ 178 (193)
T 2voo_A 113 YIKGFPTD--ATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETD 178 (193)
T ss_dssp EEECCCTT--CCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEE
T ss_pred EecCCCCc--CCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEE
Confidence 56666432 2356788899999999888753 2236778899999999975444455443
No 182
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=45.50 E-value=33 Score=23.01 Aligned_cols=66 Identities=24% Similarity=0.264 Sum_probs=43.1
Q ss_pred CCCCCCCCCcccccccCCCCchHHHHHHHHhhCCceEEecCC---------cCEEEecCHHHHHHHHHhcCcccCCCC
Q 043529 35 LPPGPKPWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---------FPVVVGSSVEMAEAFLKTHDALFSYRP 103 (307)
Q Consensus 35 lpPgP~~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---------~~~Vvv~~~e~~~evl~~~~~~f~~R~ 103 (307)
.|+.|..--++||+..-. -...+.+++.+|| |..+++.. .=.|...+++.++.++.-++..+.+|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~--t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 84 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNT--VQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRS 84 (103)
T ss_dssp CCSSSCEEEEEESCCTTC--CHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEE
T ss_pred CCCCCCeEEEEeCCCCCC--CHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeE
Confidence 344454455788885431 2345778888997 88877632 125778899999999854555555554
No 183
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.46 E-value=51 Score=21.98 Aligned_cols=59 Identities=12% Similarity=0.143 Sum_probs=40.2
Q ss_pred CCCcccccccCCCCchHHHHHHHHhhCCceEEecCC---------cCEEEecCHHHHHHHHHhcCcccCCC
Q 043529 41 PWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---------FPVVVGSSVEMAEAFLKTHDALFSYR 102 (307)
Q Consensus 41 ~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---------~~~Vvv~~~e~~~evl~~~~~~f~~R 102 (307)
.--++||+..-. -...+.+++.+||+|..+++.. .=.|...+++.++.++. +...+.+|
T Consensus 16 ~~l~v~nlp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~ 83 (103)
T 2cqg_A 16 SDLIVLGLPWKT--TEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGR 83 (103)
T ss_dssp CCEEEESCCSSC--CHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTE
T ss_pred CEEEEEcCCCcC--CHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCe
Confidence 345788875321 2345788899999998887632 13577789999999997 34445444
No 184
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.18 E-value=20 Score=24.19 Aligned_cols=60 Identities=12% Similarity=0.015 Sum_probs=40.4
Q ss_pred CCCcccccccCCCCchHHHHHHHHhhCCceEEecCCc---------CEEEecCHHHHHHHHHh-cCcccCCC
Q 043529 41 PWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSF---------PVVVGSSVEMAEAFLKT-HDALFSYR 102 (307)
Q Consensus 41 ~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~---------~~Vvv~~~e~~~evl~~-~~~~f~~R 102 (307)
.--++||+..-. ....+.+++.+||+|..+++... =.|...+++.|+.++.. ++..+.+|
T Consensus 16 ~~l~V~nlp~~~--t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (103)
T 2cq0_A 16 ATIRVTNLSEDT--RETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHL 85 (103)
T ss_dssp EEEEEESCCTTC--CHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred CEEEEeCCCCCC--CHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 345788875431 23457778889999988876432 26778899999999873 44445444
No 185
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=45.06 E-value=41 Score=24.47 Aligned_cols=58 Identities=17% Similarity=0.084 Sum_probs=39.5
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCCc---------CEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 44 IIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSF---------PVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 44 ilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~---------~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
++||++.- --...+.++..+||+|..+++-.. =.|...+++.++.++.. ++..+.+|+
T Consensus 6 ~v~nlp~~--~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 73 (167)
T 1fxl_A 6 IVNYLPQN--MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT 73 (167)
T ss_dssp EEESCCTT--CCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEcCCCCC--CCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCce
Confidence 56777432 123467788999999988876322 36778999999999863 555555443
No 186
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=44.96 E-value=30 Score=26.18 Aligned_cols=59 Identities=10% Similarity=0.081 Sum_probs=40.9
Q ss_pred CcccccccCCCCchHHHHHHHHhhCCceEEecCCc---------CEEEecCHHHHHHHHHhcCcccCCCC
Q 043529 43 PIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSF---------PVVVGSSVEMAEAFLKTHDALFSYRP 103 (307)
Q Consensus 43 PilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~---------~~Vvv~~~e~~~evl~~~~~~f~~R~ 103 (307)
-++||+..- .....+.+++.+||+|..+.+... =.|-..+++.|..++..++..+.+|+
T Consensus 107 l~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~ 174 (196)
T 1l3k_A 107 IFVGGIKED--TEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHN 174 (196)
T ss_dssp EEEECCTTT--CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEE
T ss_pred EEEeCCCCC--CCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEE
Confidence 356666432 234567888899999988876421 26778899999999976665555554
No 187
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=44.81 E-value=37 Score=23.16 Aligned_cols=61 Identities=20% Similarity=0.225 Sum_probs=40.6
Q ss_pred CCcccccccCCCCchHHHHHHHHhhCCceEEecCC-cCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 42 WPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS-FPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 42 lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~-~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
--++||+..-. .-...+.+++.+||+|..+++.. .=.|...+++.|+.++.. ++..+.+|+
T Consensus 29 ~l~V~nl~~~~-~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 91 (110)
T 1wf1_A 29 RVFIGNLNTAL-VKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGRVLAGQT 91 (110)
T ss_dssp EEEECSCCCSS-CCHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHHHTTCEETTEE
T ss_pred EEEEeCCCccc-CCHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 34678875320 12456788899999998888743 235667888999988853 555555543
No 188
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=44.70 E-value=27 Score=24.22 Aligned_cols=56 Identities=13% Similarity=0.029 Sum_probs=37.1
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCCc---------CEEEecCHHHHHHHHHh-cCcccCC
Q 043529 44 IIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSF---------PVVVGSSVEMAEAFLKT-HDALFSY 101 (307)
Q Consensus 44 ilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~---------~~Vvv~~~e~~~evl~~-~~~~f~~ 101 (307)
++||+..- --...+.+++.+||+|..+++... =.|...+++.++.++.. ++..+.+
T Consensus 44 ~V~nlp~~--~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 109 (118)
T 2khc_A 44 FIYHLPQE--FTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGT 109 (118)
T ss_dssp EEECSCTT--CCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETT
T ss_pred EEeCCCCC--CCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 56666432 124567888899999998887422 25777899999998864 3333433
No 189
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.57 E-value=42 Score=22.02 Aligned_cols=60 Identities=20% Similarity=0.253 Sum_probs=40.3
Q ss_pred CCcccccccCCCCchHHHHHHHHhhCCceEE-ecCC---------cCEEEecCHHHHHHHHH-hcCcccCCCC
Q 043529 42 WPIIGNLNLIGPLPYRSIHALSEKYGPIMQL-KFGS---------FPVVVGSSVEMAEAFLK-THDALFSYRP 103 (307)
Q Consensus 42 lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~-~lg~---------~~~Vvv~~~e~~~evl~-~~~~~f~~R~ 103 (307)
--++||++.-. ....+.+++.+||+|..+ ++.. .=.|...+++.|+.++. -++..+.+|+
T Consensus 7 ~l~V~nLp~~~--t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 77 (96)
T 1x5t_A 7 GIFIGNLDPEI--DEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRP 77 (96)
T ss_dssp EEEEECCCTTC--CHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEE
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 34678875431 245678889999998776 5532 22677899999999987 3444555544
No 190
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.50 E-value=69 Score=21.51 Aligned_cols=60 Identities=13% Similarity=0.026 Sum_probs=40.3
Q ss_pred CCcccccccCCCCchHHHHHHHHhhCC-ceEEecC----------CcCEEEecCHHHHHHHHHh--cC-cccCCCC
Q 043529 42 WPIIGNLNLIGPLPYRSIHALSEKYGP-IMQLKFG----------SFPVVVGSSVEMAEAFLKT--HD-ALFSYRP 103 (307)
Q Consensus 42 lPilGn~~~l~~~~~~~~~~~~~kYG~-i~~~~lg----------~~~~Vvv~~~e~~~evl~~--~~-~~f~~R~ 103 (307)
--++||+..- .-...+.+++.+||+ |..+.+- +.-.|...+++.++.++.. ++ ..+.+|+
T Consensus 10 ~l~V~nLp~~--~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~ 83 (109)
T 2dis_A 10 RLFIGGIPKM--KKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ 83 (109)
T ss_dssp EEEEECCCTT--SCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBC
T ss_pred EEEEeCCCCc--CCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCe
Confidence 3478887532 123467788899998 9888764 1236778899999999874 22 3455543
No 191
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=44.32 E-value=42 Score=22.27 Aligned_cols=60 Identities=18% Similarity=0.180 Sum_probs=41.0
Q ss_pred CCcccccccCCCCchHHHHHHHHhhCCceEEecCC---cCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 42 WPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---FPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 42 lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
--++||++.- -....+.+++.+||+|..+++.. .=.|...+++.|+.++.. ++..+.+|+
T Consensus 17 ~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~ 80 (99)
T 2cpj_A 17 RLFVGNLPPD--ITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQ 80 (99)
T ss_dssp EEEEESCCTT--CCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBC
T ss_pred EEEEeCCCCC--CCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCce
Confidence 4478888542 12345788899999998888753 235667888999888753 555565554
No 192
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=44.26 E-value=57 Score=23.22 Aligned_cols=59 Identities=17% Similarity=0.187 Sum_probs=40.0
Q ss_pred CcccccccCCCCchHHHHHHHHhhCCceEEecCC---------cCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 43 PIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---------FPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 43 PilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---------~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
-++||+..- .-...+.+++.+||+|..+++-. .=.|...+++.|+.++.. ++..+.+|+
T Consensus 45 l~V~nLp~~--~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 113 (139)
T 1u6f_A 45 LMVNYIPTT--VDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKR 113 (139)
T ss_dssp EEEESCSTT--CCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCE
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 356776432 12346788899999998887631 126778899999999874 555555553
No 193
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=44.20 E-value=39 Score=24.41 Aligned_cols=64 Identities=14% Similarity=0.109 Sum_probs=39.6
Q ss_pred CCCCCC--CCcccccccCCCCchHHHHHHHHhhCCceEEecCC-----cCEEEecCHHHHHHHHH-hcCcccCC
Q 043529 36 PPGPKP--WPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS-----FPVVVGSSVEMAEAFLK-THDALFSY 101 (307)
Q Consensus 36 pPgP~~--lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~-----~~~Vvv~~~e~~~evl~-~~~~~f~~ 101 (307)
+++|.+ +-++||+.+-. -...+.+++.+||+|-.+++.. +=.|...+++.|+.+.. -++..+-+
T Consensus 22 ~~~ps~VL~I~V~NL~~~v--te~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g 93 (130)
T 3zzy_A 22 MAGQSPVLRIIVENLFYPV--TLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN 93 (130)
T ss_dssp ---CCSEEEEEEESCCSCC--CHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEET
T ss_pred cCCCCceEEEEECCCCCCC--CHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecC
Confidence 344433 33588885421 2345778899999998887643 24677888888888764 24444433
No 194
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=43.56 E-value=55 Score=22.35 Aligned_cols=47 Identities=17% Similarity=0.155 Sum_probs=33.9
Q ss_pred HHHHHHHHhhCCceEEecCCc-----------CEEEecCHHHHHHHHH-hcCcccCCCC
Q 043529 57 RSIHALSEKYGPIMQLKFGSF-----------PVVVGSSVEMAEAFLK-THDALFSYRP 103 (307)
Q Consensus 57 ~~~~~~~~kYG~i~~~~lg~~-----------~~Vvv~~~e~~~evl~-~~~~~f~~R~ 103 (307)
..+.+...+||+|..+++... =.|-..+++.|+.++. -++..|.+|+
T Consensus 30 ~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~ 88 (105)
T 3v4m_A 30 EDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRV 88 (105)
T ss_dssp HHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred HHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCE
Confidence 456677889999999987421 1477788998888764 3566777665
No 195
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.05 E-value=34 Score=22.51 Aligned_cols=59 Identities=14% Similarity=0.191 Sum_probs=39.9
Q ss_pred CcccccccCCCCchHHHHHHHHhhCCceEEecCC----cCEEEecCHHHHHHHHHhcCcccCCCC
Q 043529 43 PIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS----FPVVVGSSVEMAEAFLKTHDALFSYRP 103 (307)
Q Consensus 43 PilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~----~~~Vvv~~~e~~~evl~~~~~~f~~R~ 103 (307)
-++||+..- .....+.+++.+||+|..+..-. .=.|-..+++.++.++.-++..+.+|+
T Consensus 11 l~V~nl~~~--~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~l~g~~~~g~~ 73 (94)
T 2e5g_A 11 VFVSGFPRG--VDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLSQSQHSLGGHR 73 (94)
T ss_dssp EEEECCCTT--CCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHTCSCCEETTEE
T ss_pred EEEECCCCC--CCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHhcCCeEECCEE
Confidence 468887542 12446788889999988773322 234667899999999875555666654
No 196
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=42.90 E-value=73 Score=24.39 Aligned_cols=59 Identities=20% Similarity=0.277 Sum_probs=39.9
Q ss_pred CcccccccCCCCchHHHHHHHHhhCCceEEecCC---------cCEEEecCHHHHHHHHH-hcCcccCCCC
Q 043529 43 PIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---------FPVVVGSSVEMAEAFLK-THDALFSYRP 103 (307)
Q Consensus 43 PilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---------~~~Vvv~~~e~~~evl~-~~~~~f~~R~ 103 (307)
-++||+..- --...+.+++.+||+|..+++-. .=.|...+++.++.++. -++..+.+|+
T Consensus 31 l~V~nLp~~--~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 99 (216)
T 2qfj_A 31 VYVGSIYYE--LGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRN 99 (216)
T ss_dssp EEEECCCTT--CCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CC
T ss_pred EEEECCCCC--CCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCee
Confidence 467777432 12456788899999999888732 23678889999999987 3454554443
No 197
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=42.83 E-value=22 Score=24.68 Aligned_cols=64 Identities=13% Similarity=-0.044 Sum_probs=41.1
Q ss_pred CCCCCCCcccccccCCCCchHHHHHHHHhhCCc-eEEecC--------CcCEEEecCHHHHHHHHHhcCcccCCC
Q 043529 37 PGPKPWPIIGNLNLIGPLPYRSIHALSEKYGPI-MQLKFG--------SFPVVVGSSVEMAEAFLKTHDALFSYR 102 (307)
Q Consensus 37 PgP~~lPilGn~~~l~~~~~~~~~~~~~kYG~i-~~~~lg--------~~~~Vvv~~~e~~~evl~~~~~~f~~R 102 (307)
|.+...-++||+..-. -...+.+++.+||.| ..+++. +.=.|...+++.++.++..++..+.+|
T Consensus 12 ~~~~~~l~V~nLp~~~--t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr 84 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSI--TKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGR 84 (114)
T ss_dssp CSCCCEEEEESCCTTS--CHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTE
T ss_pred CCCccEEEEeCcCCcC--CHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCe
Confidence 3333445788875431 234577888999998 444442 123678899999999987655444444
No 198
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=42.71 E-value=48 Score=25.04 Aligned_cols=54 Identities=13% Similarity=0.150 Sum_probs=37.4
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCC-----cCEEEecCHHHHHHHHHh-cCccc
Q 043529 44 IIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS-----FPVVVGSSVEMAEAFLKT-HDALF 99 (307)
Q Consensus 44 ilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~-----~~~Vvv~~~e~~~evl~~-~~~~f 99 (307)
++||+..- --...+.+.+.+||+|-.+++.. .=.|-..|++.|++++.. ++..+
T Consensus 50 ~VgNL~~~--vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i 109 (164)
T 1sjr_A 50 IVENLFYP--VTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNI 109 (164)
T ss_dssp EECSCCSC--CCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCS
T ss_pred EEeCcCCC--CCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 47887532 12346788899999998888631 346778899999988763 44445
No 199
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=42.52 E-value=44 Score=29.71 Aligned_cols=61 Identities=13% Similarity=0.114 Sum_probs=41.8
Q ss_pred CCCcccccccCCCCchHHHHHHHHhhCCceEEecCC---------cCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 41 PWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---------FPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 41 ~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---------~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
..-+||||..-. ....+.+++.+||+|..+++.. .=.|...+++.|..++.. ++..+.+++
T Consensus 103 ~~lfV~nL~~~~--te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~ 173 (437)
T 3pgw_S 103 KTLFVARVNYDT--TESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRR 173 (437)
T ss_pred CEEEEeCCCCCC--CHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEE
Confidence 345788875431 2346778889999998887631 236778899999998854 555555543
No 200
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=42.32 E-value=73 Score=22.11 Aligned_cols=59 Identities=17% Similarity=0.152 Sum_probs=39.8
Q ss_pred CcccccccCCCCchHHHHHHHHhhCCceEEecCC--------cCEEEecCHHHHHHHHH-hcCcccCCCC
Q 043529 43 PIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS--------FPVVVGSSVEMAEAFLK-THDALFSYRP 103 (307)
Q Consensus 43 PilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~--------~~~Vvv~~~e~~~evl~-~~~~~f~~R~ 103 (307)
-++||+..- .-...+.+++.+||+|..+++-. .=.|...+++.++.++. -++..+.+|+
T Consensus 38 l~V~nlp~~--~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 105 (124)
T 2kt5_A 38 LLVSNLDFG--VSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRP 105 (124)
T ss_dssp EEEESCCSS--CCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred EEEeCCCCC--CCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 357776432 12345788889999998887632 23677789999999886 3555555554
No 201
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=41.56 E-value=82 Score=23.82 Aligned_cols=48 Identities=17% Similarity=0.104 Sum_probs=34.7
Q ss_pred hHHHHHHHHhhCCceEEecCC--------cCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 56 YRSIHALSEKYGPIMQLKFGS--------FPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 56 ~~~~~~~~~kYG~i~~~~lg~--------~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
...+.+++.+||+|..+.+-. .=.|...+++.|+.++.. ++..+.+|+
T Consensus 102 e~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~ 158 (177)
T 2f3j_A 102 DADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRP 158 (177)
T ss_dssp HHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSB
T ss_pred HHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEE
Confidence 456788899999998888732 236778899999999873 444555554
No 202
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.35 E-value=39 Score=22.78 Aligned_cols=48 Identities=13% Similarity=0.039 Sum_probs=34.5
Q ss_pred chHHHHHHHHhhCCceEEecC-CcCEEEecCHHHHHHHHHhcCcccCCC
Q 043529 55 PYRSIHALSEKYGPIMQLKFG-SFPVVVGSSVEMAEAFLKTHDALFSYR 102 (307)
Q Consensus 55 ~~~~~~~~~~kYG~i~~~~lg-~~~~Vvv~~~e~~~evl~~~~~~f~~R 102 (307)
+...+.+...+||.+..+++- ..-.|...|.+.|..++.-++..+.+|
T Consensus 28 l~~~L~~~F~~~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~mnG~~v~Gr 76 (91)
T 2dnr_A 28 LIDELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLSLNGKELLNR 76 (91)
T ss_dssp HHHHHHHHHHTTCCEEEEEECSSSEEEEESSHHHHHHGGGGTTCEETTE
T ss_pred HHHHHHHHHHhCCCeEEEEEecCCEEEEECChHHHHHHHhcCCeEeCCe
Confidence 345667777889999999864 445667779999988887666554444
No 203
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.33 E-value=72 Score=21.02 Aligned_cols=60 Identities=20% Similarity=0.120 Sum_probs=41.6
Q ss_pred CCcccccccCCCCchHHHHHHHHhh--CCceEEecCC-cCEEEecCHHHHHHHHH-hcCcccCCCC
Q 043529 42 WPIIGNLNLIGPLPYRSIHALSEKY--GPIMQLKFGS-FPVVVGSSVEMAEAFLK-THDALFSYRP 103 (307)
Q Consensus 42 lPilGn~~~l~~~~~~~~~~~~~kY--G~i~~~~lg~-~~~Vvv~~~e~~~evl~-~~~~~f~~R~ 103 (307)
.-++||+..- -....+.+++.+| |.|..+.+.. .=.|...+++.|+.++. -++..+.+|+
T Consensus 17 ~l~V~nLp~~--~t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 17 ILYVRNLMLS--TSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp EEEEESCCTT--CCHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 4578887542 1244678889999 8898887643 34677889999999886 4555555543
No 204
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=40.63 E-value=63 Score=20.54 Aligned_cols=59 Identities=14% Similarity=0.228 Sum_probs=39.6
Q ss_pred CCcccccccCCCCchHHHHHHHHhh----C-------CceEEecCC---cCEEEecCHHHHHHHHHhcCcccCCC
Q 043529 42 WPIIGNLNLIGPLPYRSIHALSEKY----G-------PIMQLKFGS---FPVVVGSSVEMAEAFLKTHDALFSYR 102 (307)
Q Consensus 42 lPilGn~~~l~~~~~~~~~~~~~kY----G-------~i~~~~lg~---~~~Vvv~~~e~~~evl~~~~~~f~~R 102 (307)
--++||+..-. ....+.++..+| | +|..+++.. .=.|-..+++.++.++.-++..+.+|
T Consensus 8 ~l~V~nLp~~~--t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~~l~g~~~~g~ 80 (87)
T 2hzc_A 8 RLYVGNIPFGI--TEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQ 80 (87)
T ss_dssp EEEEESCCTTC--CHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHGGGTTCEETTE
T ss_pred EEEEeCCCCCC--CHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHHhcCCCEECCe
Confidence 34688875421 234577788888 8 898888753 33677889999999884444444443
No 205
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.30 E-value=60 Score=22.11 Aligned_cols=63 Identities=16% Similarity=0.166 Sum_probs=40.5
Q ss_pred CCCCCcccccccCCCCchHHHHHHHHhhCCc----eEEec--CC---cCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 39 PKPWPIIGNLNLIGPLPYRSIHALSEKYGPI----MQLKF--GS---FPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 39 P~~lPilGn~~~l~~~~~~~~~~~~~kYG~i----~~~~l--g~---~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
|..--++||+..- .....+.+++.+||+| ..+.. |. .=.|...+++.|+.++.. ++..+.+|+
T Consensus 24 ~~~~l~V~nLp~~--~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 96 (115)
T 2cpx_A 24 PNKVLYLKNLSPR--VTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKI 96 (115)
T ss_dssp CCSEEEEECCCTT--CCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCB
T ss_pred CCCEEEEeCCCCC--CCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 3345578887532 1234577788899987 45443 21 236778899999999874 555565554
No 206
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.74 E-value=19 Score=25.70 Aligned_cols=60 Identities=22% Similarity=0.233 Sum_probs=39.4
Q ss_pred CCCcccccccCCCCchHHHHHHHHhhCCc----eEEec-----CC---cCEEEecCHHHHHHHHHhcCcccCCC
Q 043529 41 PWPIIGNLNLIGPLPYRSIHALSEKYGPI----MQLKF-----GS---FPVVVGSSVEMAEAFLKTHDALFSYR 102 (307)
Q Consensus 41 ~lPilGn~~~l~~~~~~~~~~~~~kYG~i----~~~~l-----g~---~~~Vvv~~~e~~~evl~~~~~~f~~R 102 (307)
..-++|||++-. -...+.+++.+||+| -.+++ |. .=.|...+++.++.++.+++..+.+|
T Consensus 24 ~~v~V~nLp~~~--te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR 95 (123)
T 2dha_A 24 VIVRMRGLPFTA--TAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKR 95 (123)
T ss_dssp CEEEECSCCTTC--CHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSC
T ss_pred CEEEEeCCCCCC--CHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCe
Confidence 445688875432 244688899999975 23333 21 23788889999999998765555444
No 207
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.66 E-value=61 Score=21.94 Aligned_cols=61 Identities=13% Similarity=0.073 Sum_probs=40.9
Q ss_pred CCCcccccccCCCCchHHHHHHHHhhCCceEEecCC---cCEEEecCHHHHHHHHHh---cCcccCCCC
Q 043529 41 PWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---FPVVVGSSVEMAEAFLKT---HDALFSYRP 103 (307)
Q Consensus 41 ~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---~~~Vvv~~~e~~~evl~~---~~~~f~~R~ 103 (307)
..-++||+..- --...+.+++.+||.|..+.+.. .=.|...+.+.|+.++.. +...+.+|+
T Consensus 16 ~~l~V~nLp~~--~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 16 RVLHIRKLPGE--VTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp SEEEEESCCTT--CCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CEEEEeCCCCC--CCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 34678888642 12345778889999998887642 346777899999988763 233455554
No 208
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=39.36 E-value=40 Score=24.51 Aligned_cols=58 Identities=17% Similarity=0.188 Sum_probs=39.2
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecC--------CcCEEEecCHHHHHHHH-HhcCcccCCCC
Q 043529 44 IIGNLNLIGPLPYRSIHALSEKYGPIMQLKFG--------SFPVVVGSSVEMAEAFL-KTHDALFSYRP 103 (307)
Q Consensus 44 ilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg--------~~~~Vvv~~~e~~~evl-~~~~~~f~~R~ 103 (307)
++||++.- -....+.++..+||+|..+++- +.=.|...+++.++.++ .-++..+.+|+
T Consensus 4 ~V~nlp~~--~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 70 (166)
T 3md3_A 4 YVGNLDKA--ITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNI 70 (166)
T ss_dssp EEEEEETT--CCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EECCCCCc--CCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCe
Confidence 46776532 1234677889999999988873 12367788999999998 44555555543
No 209
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.34 E-value=36 Score=23.40 Aligned_cols=68 Identities=19% Similarity=0.081 Sum_probs=44.1
Q ss_pred CCCCCCCCcccccccCCC---C------chHHHHHHHHhhCCceEEecC-----CcCEEEecCHHHHHHHHHh-cCcccC
Q 043529 36 PPGPKPWPIIGNLNLIGP---L------PYRSIHALSEKYGPIMQLKFG-----SFPVVVGSSVEMAEAFLKT-HDALFS 100 (307)
Q Consensus 36 pPgP~~lPilGn~~~l~~---~------~~~~~~~~~~kYG~i~~~~lg-----~~~~Vvv~~~e~~~evl~~-~~~~f~ 100 (307)
.|.|...-++.|+..... + ....+.+.+.+||+|..+.+. +.=.|...+++.|+.++.. ++..|.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 355556667888743211 1 135677788999999888763 2236777889999988853 455566
Q ss_pred CCC
Q 043529 101 YRP 103 (307)
Q Consensus 101 ~R~ 103 (307)
+|+
T Consensus 91 gr~ 93 (112)
T 2dit_A 91 GRQ 93 (112)
T ss_dssp TEE
T ss_pred CcE
Confidence 654
No 210
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=39.27 E-value=64 Score=21.93 Aligned_cols=44 Identities=23% Similarity=0.211 Sum_probs=31.0
Q ss_pred HHHH-HhhCCceEEecCCc--------CEEEecCHHHHHHHHH-hcCcccCCCC
Q 043529 60 HALS-EKYGPIMQLKFGSF--------PVVVGSSVEMAEAFLK-THDALFSYRP 103 (307)
Q Consensus 60 ~~~~-~kYG~i~~~~lg~~--------~~Vvv~~~e~~~evl~-~~~~~f~~R~ 103 (307)
.+.. .+||+|-.+++... =.|...+++.|+.+.. -++..|.+|+
T Consensus 44 ~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 44 FTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp HHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred HHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 3445 89999999987532 2466778998888875 3566676665
No 211
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.85 E-value=81 Score=20.68 Aligned_cols=59 Identities=10% Similarity=0.119 Sum_probs=37.5
Q ss_pred CcccccccCCCCchHHHHHHHHhhCCc-eEEecC---CcCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 43 PIIGNLNLIGPLPYRSIHALSEKYGPI-MQLKFG---SFPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 43 PilGn~~~l~~~~~~~~~~~~~kYG~i-~~~~lg---~~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
-++||+..- .-...+.+++.+||+| ..+..+ +.-.|...+++.++.++.. ++..+.+|+
T Consensus 22 l~V~nL~~~--~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (97)
T 2e5j_A 22 VYVGNLPRD--ARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDT 85 (97)
T ss_dssp EEEECCCTT--CCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSC
T ss_pred EEEeCCCCc--CcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 367777432 1234677889999997 333323 2336777899999998854 555555554
No 212
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=38.83 E-value=56 Score=23.80 Aligned_cols=59 Identities=12% Similarity=0.139 Sum_probs=40.6
Q ss_pred CcccccccCCCCchHHHHHHHHhhCCceEEecCCc---------CEEEecCHHHHHHHHHhcCcccCCCC
Q 043529 43 PIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSF---------PVVVGSSVEMAEAFLKTHDALFSYRP 103 (307)
Q Consensus 43 PilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~---------~~Vvv~~~e~~~evl~~~~~~f~~R~ 103 (307)
-++||+..- .....+.++..+||+|..+.+... =.|-..+++.|..++..++..+.+|+
T Consensus 90 l~V~nlp~~--~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~ 157 (167)
T 2cjk_A 90 IFVGGIGPD--VRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRK 157 (167)
T ss_dssp EEEEEECTT--CCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSC
T ss_pred EEECCCCCC--CCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeE
Confidence 456666432 224567788899999988876432 25778899999999975555555554
No 213
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=38.41 E-value=83 Score=22.17 Aligned_cols=61 Identities=13% Similarity=0.113 Sum_probs=41.1
Q ss_pred CCCcccccccCCCCchHHHHHHHHhhCCceEEecC---CcCEEEecCHHHHHHHHHh---cCcccCCCC
Q 043529 41 PWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFG---SFPVVVGSSVEMAEAFLKT---HDALFSYRP 103 (307)
Q Consensus 41 ~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg---~~~~Vvv~~~e~~~evl~~---~~~~f~~R~ 103 (307)
..-++||+..-. -...+.+++.+||.|..+++. +.=.|-..+.+.|..++.. +...+.+|+
T Consensus 32 ~~LfVgNLp~~v--te~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~ 98 (119)
T 2ad9_A 32 RVIHIRKLPIDV--TEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 98 (119)
T ss_dssp SEEEEESCCTTC--CHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBC
T ss_pred CEEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeE
Confidence 345789886431 234678889999999888764 2346777889999888753 123455665
No 214
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=38.40 E-value=95 Score=21.86 Aligned_cols=49 Identities=20% Similarity=0.177 Sum_probs=34.9
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCCc---------CEEEecCHHHHHHHHHh
Q 043529 44 IIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSF---------PVVVGSSVEMAEAFLKT 94 (307)
Q Consensus 44 ilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~---------~~Vvv~~~e~~~evl~~ 94 (307)
++||+..- .....+.+++.+||+|..+++... =.|...+++.++.++..
T Consensus 67 ~v~nlp~~--~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 124 (140)
T 2ku7_A 67 YVGGLAEE--VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 124 (140)
T ss_dssp EEECCCTT--CCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHH
T ss_pred EEEeCCCC--CCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 46665432 123567888999999999887321 26778899999999863
No 215
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=38.09 E-value=37 Score=23.26 Aligned_cols=38 Identities=16% Similarity=0.076 Sum_probs=30.7
Q ss_pred hHHHHHHHHhhCCceEEecCCc-CEEEecCHHHHHHHHH
Q 043529 56 YRSIHALSEKYGPIMQLKFGSF-PVVVGSSVEMAEAFLK 93 (307)
Q Consensus 56 ~~~~~~~~~kYG~i~~~~lg~~-~~Vvv~~~e~~~evl~ 93 (307)
..-+.+++..||.+.=-|+... =.|++++++.|++++.
T Consensus 29 t~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 29 TSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp HHHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHH
T ss_pred hHHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHH
Confidence 4557788999998777787764 4788999999999986
No 216
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.81 E-value=83 Score=20.48 Aligned_cols=60 Identities=17% Similarity=0.062 Sum_probs=40.5
Q ss_pred CCcccccccCCCCchHHHHHHHHhhCCceEEe-cCCc-----CEEEecCHHHHHHHHH-hcCcccCCCC
Q 043529 42 WPIIGNLNLIGPLPYRSIHALSEKYGPIMQLK-FGSF-----PVVVGSSVEMAEAFLK-THDALFSYRP 103 (307)
Q Consensus 42 lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~-lg~~-----~~Vvv~~~e~~~evl~-~~~~~f~~R~ 103 (307)
--++||++.-. -...+.+++.+||+|-.++ +... -.|...+++.++.++. -++..+.+|+
T Consensus 17 ~l~V~nlp~~~--t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 83 (96)
T 2e44_A 17 KLQIRNIPPHL--QWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFT 83 (96)
T ss_dssp CEEEEEECSSS--CHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred EEEEEcCCCCC--CHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 45788885431 2346788889999998883 4322 3577789999999886 3555555554
No 217
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=37.28 E-value=90 Score=20.76 Aligned_cols=50 Identities=20% Similarity=0.180 Sum_probs=36.0
Q ss_pred CCcccccccCCCCchHHHHHHHHhhCCceEEecCC---------cCEEEecCHHHHHHHHH
Q 043529 42 WPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---------FPVVVGSSVEMAEAFLK 93 (307)
Q Consensus 42 lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---------~~~Vvv~~~e~~~evl~ 93 (307)
--++||+..- .-...+.+++.+||+|..+++.. .=.|...+++.|+.++.
T Consensus 15 ~l~V~nlp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 73 (106)
T 2dgp_A 15 KLFIGQIPRN--LDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQS 73 (106)
T ss_dssp EEEEESCCTT--CCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHH
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHH
Confidence 4468887532 12346788899999999988743 22677789999999886
No 218
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=36.93 E-value=49 Score=24.32 Aligned_cols=60 Identities=12% Similarity=0.174 Sum_probs=39.8
Q ss_pred CCCcccccccCCCCchHHHHHHHHhhCCceEEecCCc---------CEEEecCHHHHHHHHHh-cCcccCCC
Q 043529 41 PWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSF---------PVVVGSSVEMAEAFLKT-HDALFSYR 102 (307)
Q Consensus 41 ~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~---------~~Vvv~~~e~~~evl~~-~~~~f~~R 102 (307)
.--++||++.- .....+.++..+||+|-.+.+... =.|-..+++.|+.++.. ++..+.+|
T Consensus 95 ~~l~v~nlp~~--~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 164 (172)
T 2g4b_A 95 HKLFIGGLPNY--LNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDK 164 (172)
T ss_dssp TCEEEECCCTT--CCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTE
T ss_pred CEEEEEcCCCc--CCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCe
Confidence 34467777542 124567888899999988876322 25667789999988864 55455444
No 219
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=36.84 E-value=45 Score=19.07 Aligned_cols=7 Identities=43% Similarity=0.430 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 043529 21 LILLSLR 27 (307)
Q Consensus 21 ~~~l~~~ 27 (307)
++|++++
T Consensus 32 ~~~~RRR 38 (44)
T 2jwa_A 32 GILIKRR 38 (44)
T ss_dssp HHHHHHH
T ss_pred Hhheehh
Confidence 3444444
No 220
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=36.33 E-value=96 Score=20.79 Aligned_cols=53 Identities=13% Similarity=0.118 Sum_probs=37.6
Q ss_pred CCCCcccccccCCCCchHHHHHHHHhhCCceEEecCC---------cCEEEecCHHHHHHHHHh
Q 043529 40 KPWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---------FPVVVGSSVEMAEAFLKT 94 (307)
Q Consensus 40 ~~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---------~~~Vvv~~~e~~~evl~~ 94 (307)
...-++||+..-. -...+.+++.+||+|..+.+.. .=.|...+++.++.++..
T Consensus 15 ~~~l~V~nLp~~~--t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 76 (111)
T 1x4h_A 15 GKTVFIRNLSFDS--EEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAA 76 (111)
T ss_dssp CCCEEEESCCTTC--CHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHH
T ss_pred CCEEEEECCCCCC--CHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHH
Confidence 3345788885431 2345778889999999888742 125777899999999864
No 221
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=36.32 E-value=99 Score=20.95 Aligned_cols=61 Identities=13% Similarity=0.086 Sum_probs=41.0
Q ss_pred CCCcccccccCCCCchHHHHHHHHhhCCceEEecCC---cCEEEecCHHHHHHHHHh---cCcccCCCC
Q 043529 41 PWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---FPVVVGSSVEMAEAFLKT---HDALFSYRP 103 (307)
Q Consensus 41 ~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---~~~Vvv~~~e~~~evl~~---~~~~f~~R~ 103 (307)
..-++||+..- --...+.+++.+||+|-.+++-. .=.|-..+.+.|+.++.. +...+.+|+
T Consensus 16 ~~l~V~nLp~~--~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~ 82 (104)
T 1wex_A 16 PVVHVRGLCES--VVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQ 82 (104)
T ss_dssp SEEEEESCCSS--CCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSB
T ss_pred CEEEEeCCCCC--CCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 34678887542 12346788899999999988642 346777889999888753 222355554
No 222
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=36.23 E-value=52 Score=23.92 Aligned_cols=59 Identities=14% Similarity=-0.026 Sum_probs=41.4
Q ss_pred CCcccccccCCCCchHHHHHHHHhhCCceEEecCC--------cCEEEecCHHHHHHHHHhcCcccCCCC
Q 043529 42 WPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS--------FPVVVGSSVEMAEAFLKTHDALFSYRP 103 (307)
Q Consensus 42 lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~--------~~~Vvv~~~e~~~evl~~~~~~f~~R~ 103 (307)
.-++||+..-. -...+.+++.+|| +..+++.. .=.|...+++.++.++..+...+.+|+
T Consensus 48 ~lfV~nLp~~~--te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~ 114 (139)
T 2hgn_A 48 CVHMRGLPYKA--TENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRY 114 (139)
T ss_dssp CEECCSCCTTC--CHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCC
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEE
Confidence 44678875432 2456888999999 55777642 246888899999999966666677775
No 223
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.11 E-value=1.1e+02 Score=21.37 Aligned_cols=59 Identities=14% Similarity=0.065 Sum_probs=40.3
Q ss_pred CCCCCCcc--cccccCCCCchHHHHHHHHhhCCceEEecCC---cCEEEecCHHHHHHHHHh-cCcc
Q 043529 38 GPKPWPII--GNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---FPVVVGSSVEMAEAFLKT-HDAL 98 (307)
Q Consensus 38 gP~~lPil--Gn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---~~~Vvv~~~e~~~evl~~-~~~~ 98 (307)
.|...-++ ||+..-. ....+.+.+.+||.|-.+++.. .=.|-..+++.|++++.. ++..
T Consensus 23 ~pt~~L~V~Ng~L~~~~--te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~ 87 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGV--SRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKE 87 (114)
T ss_dssp SCCSEEEEETCTGGGTC--CHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCE
T ss_pred CCCCEEEEECCCCCCCC--CHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCE
Confidence 34455678 6675421 2356888899999999988743 236777899999998864 4433
No 224
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.10 E-value=28 Score=23.64 Aligned_cols=59 Identities=15% Similarity=0.031 Sum_probs=40.1
Q ss_pred CCcccccccCCCCchHHHHHHHHhhCCceEEecCC--------cCEEEecCHHHHHHHHHhcCcccCCCC
Q 043529 42 WPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS--------FPVVVGSSVEMAEAFLKTHDALFSYRP 103 (307)
Q Consensus 42 lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~--------~~~Vvv~~~e~~~evl~~~~~~f~~R~ 103 (307)
.-++||++.-. -...+.+++.+||.+ .+++.. .=.|...+++.++.++..+...+.+|+
T Consensus 17 ~l~V~nLp~~~--te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~ 83 (102)
T 1wez_A 17 CVHMRGLPYRA--TENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRY 83 (102)
T ss_dssp EEEEESCCTTC--CHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSC
T ss_pred EEEEeCCCCCC--CHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcE
Confidence 44678875432 234677888899965 666531 136777899999999976666676775
No 225
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.67 E-value=82 Score=21.33 Aligned_cols=60 Identities=13% Similarity=0.151 Sum_probs=41.0
Q ss_pred CCcccccccCCCCchHHHHHHHHhhCCceEEecCC--------cCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 42 WPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS--------FPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 42 lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~--------~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
--++||+..- .-...+.+++.+||+|..+++.. .=.|...+++.++.++.. ++..+.+|+
T Consensus 17 ~l~V~nlp~~--~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (114)
T 2do0_A 17 TVFVANLDYK--VGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRP 85 (114)
T ss_dssp CEEEESCCTT--CCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCE
Confidence 4568887542 12456788899999998877532 236778899999998863 555555544
No 226
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=35.34 E-value=41 Score=22.09 Aligned_cols=49 Identities=12% Similarity=0.102 Sum_probs=33.9
Q ss_pred cccccccCCCCchHHHHHHHHhhC-CceEEecCCc---------CEEEecCHHHHHHHHHh
Q 043529 44 IIGNLNLIGPLPYRSIHALSEKYG-PIMQLKFGSF---------PVVVGSSVEMAEAFLKT 94 (307)
Q Consensus 44 ilGn~~~l~~~~~~~~~~~~~kYG-~i~~~~lg~~---------~~Vvv~~~e~~~evl~~ 94 (307)
++||++.- --...+.++..+|| +|-.+++... =.|-..+++.|+.++..
T Consensus 5 ~v~nLp~~--~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~ 63 (91)
T 2lxi_A 5 MLRMLPQA--ATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEA 63 (91)
T ss_dssp EEETCCSS--CCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHT
T ss_pred EEeCCCCC--CCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHh
Confidence 56676432 12346778889999 6877776321 25788999999999864
No 227
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=35.22 E-value=50 Score=23.06 Aligned_cols=63 Identities=21% Similarity=0.159 Sum_probs=42.2
Q ss_pred CCCCcccccccCCCCchHHHHHHHHhhCCceEEecCC---cCEEEecCHHHHHHHHHh---cCcccCCCC
Q 043529 40 KPWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---FPVVVGSSVEMAEAFLKT---HDALFSYRP 103 (307)
Q Consensus 40 ~~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---~~~Vvv~~~e~~~evl~~---~~~~f~~R~ 103 (307)
...-++||+..-. -....+.+++.+||+|..+++.. .=.|-..+++.|..++.. +...+.+|+
T Consensus 25 ~~~l~V~NLp~~~-~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~ 93 (112)
T 1x4f_A 25 GRVIHLSNLPHSG-YSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRC 93 (112)
T ss_dssp CCEEEEESCCCSS-CCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSC
T ss_pred CCEEEEeCCCCcc-CCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 3445788886420 12345778889999999998763 236777899999888763 233466665
No 228
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=34.76 E-value=49 Score=22.43 Aligned_cols=61 Identities=10% Similarity=-0.057 Sum_probs=40.4
Q ss_pred CCCcccccccCCCCchHHHHHHHHhhCC---ceEEecCC--------cCEEEecCHHHHHHHHHhcCcccCCCC
Q 043529 41 PWPIIGNLNLIGPLPYRSIHALSEKYGP---IMQLKFGS--------FPVVVGSSVEMAEAFLKTHDALFSYRP 103 (307)
Q Consensus 41 ~lPilGn~~~l~~~~~~~~~~~~~kYG~---i~~~~lg~--------~~~Vvv~~~e~~~evl~~~~~~f~~R~ 103 (307)
..-++||+..-. -...+.+++.+||+ |..+++.. .=.|...+++.++.++..++..+.+|+
T Consensus 12 ~~l~V~nLp~~~--te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~ 83 (107)
T 2lmi_A 12 FLIRAQGLPWSC--TMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRY 83 (107)
T ss_dssp CEEEEECCCSSC--CSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSC
T ss_pred cEEEEeCCCCCC--CHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeE
Confidence 345788886432 13357778889887 66666532 236788899999999985554554453
No 229
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=34.03 E-value=48 Score=27.11 Aligned_cols=62 Identities=13% Similarity=0.140 Sum_probs=43.9
Q ss_pred CCCCcccccccCCCCchHHHHHHHHhhCCceEEecCC-------cCEEEecCHHHHHHHHHhcCcccCCCC
Q 043529 40 KPWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS-------FPVVVGSSVEMAEAFLKTHDALFSYRP 103 (307)
Q Consensus 40 ~~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~-------~~~Vvv~~~e~~~evl~~~~~~f~~R~ 103 (307)
..--++||++.- --...+.+++.+||+|..+++-. .=.|...+++.|+.++..++..+.+|+
T Consensus 41 ~~~l~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~ 109 (292)
T 2ghp_A 41 LTTVLVKNLPKS--YNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNE 109 (292)
T ss_dssp -CEEEEEEECTT--CCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEE
T ss_pred CCEEEEeCCCCC--CCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcE
Confidence 345578888542 12446788899999998887622 237888999999999976666666665
No 230
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=33.76 E-value=55 Score=26.03 Aligned_cols=58 Identities=17% Similarity=0.174 Sum_probs=38.8
Q ss_pred CcccccccCCCCchHHHHHHHHhhC--CceEEecCCc---------CEEEecCHHHHHHHHHh-cCcccCCC
Q 043529 43 PIIGNLNLIGPLPYRSIHALSEKYG--PIMQLKFGSF---------PVVVGSSVEMAEAFLKT-HDALFSYR 102 (307)
Q Consensus 43 PilGn~~~l~~~~~~~~~~~~~kYG--~i~~~~lg~~---------~~Vvv~~~e~~~evl~~-~~~~f~~R 102 (307)
-+||||..-. -...+.+++.+|| .|..+++-.. =.|...+.+.++.++.. ++..+.+|
T Consensus 71 lfVgnL~~~~--te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr 140 (229)
T 3q2s_C 71 LYIGNLTWWT--TDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ 140 (229)
T ss_dssp EEEESCCTTC--CHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTB
T ss_pred EEEeCCCCCC--CHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCE
Confidence 3677774321 2456888899999 8988876322 26788899999999863 33444444
No 231
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=33.12 E-value=63 Score=23.02 Aligned_cols=60 Identities=18% Similarity=0.094 Sum_probs=40.4
Q ss_pred CCCcccccccCCCCchHHHHHHHHhhCCce--EEecCC--------cCEEEecCHHHHHHHHHhcCcccCCCC
Q 043529 41 PWPIIGNLNLIGPLPYRSIHALSEKYGPIM--QLKFGS--------FPVVVGSSVEMAEAFLKTHDALFSYRP 103 (307)
Q Consensus 41 ~lPilGn~~~l~~~~~~~~~~~~~kYG~i~--~~~lg~--------~~~Vvv~~~e~~~evl~~~~~~f~~R~ 103 (307)
..-++|||..-. -...+.+++.+| .|. .+++.. .=.|...+++.++.++..+...+.+|+
T Consensus 43 ~~lfVgnLp~~~--te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~ 112 (126)
T 2hgm_A 43 GFVRLRGLPFGC--TKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY 112 (126)
T ss_dssp CEEEEECCCTTC--CHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBC
T ss_pred CEEEEeCCCCCC--CHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEE
Confidence 345778875432 234677888889 566 666532 237888999999999976665565664
No 232
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=32.91 E-value=74 Score=24.65 Aligned_cols=59 Identities=20% Similarity=0.246 Sum_probs=40.0
Q ss_pred CcccccccCCCCchHHHHHHHHhhCCceEEecCC-------cCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 43 PIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS-------FPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 43 PilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~-------~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
-++||+..- --...+.+++.+||+|..+++-. .=.|-..+++.|+.++.+ ++..+.+|+
T Consensus 106 l~v~nl~~~--~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~ 172 (213)
T 4f02_A 106 IFIKNLDKS--IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRK 172 (213)
T ss_dssp EEEESCCTT--CCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred ceECCcccc--cHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEE
Confidence 467776432 12456888899999998887631 126778899999999864 554554443
No 233
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=32.63 E-value=77 Score=22.52 Aligned_cols=55 Identities=15% Similarity=0.017 Sum_probs=36.7
Q ss_pred ccccccCCCCchHHHHHHHHhhCCceEEecC---C-cCEEEecCHHHHHHHHHh-cCcccCC
Q 043529 45 IGNLNLIGPLPYRSIHALSEKYGPIMQLKFG---S-FPVVVGSSVEMAEAFLKT-HDALFSY 101 (307)
Q Consensus 45 lGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg---~-~~~Vvv~~~e~~~evl~~-~~~~f~~ 101 (307)
+||+.+- --...+.+++.+||.|-.+++. + .=.|...+++.|..+... ++..+.+
T Consensus 30 V~NL~~~--vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g 89 (124)
T 2e5i_A 30 IQNPLYP--ITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYA 89 (124)
T ss_dssp EESCCSC--CCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBT
T ss_pred EcCcCCC--CCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 6887532 1234688889999999887653 2 246777888888877653 5555544
No 234
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=32.51 E-value=52 Score=26.75 Aligned_cols=63 Identities=22% Similarity=0.217 Sum_probs=42.2
Q ss_pred CCCcccccccC-C-CCchHHHHHHHHhhCCceEEecCC------cCEEEecCHHHHHHHHH-hcCcccCCCC
Q 043529 41 PWPIIGNLNLI-G-PLPYRSIHALSEKYGPIMQLKFGS------FPVVVGSSVEMAEAFLK-THDALFSYRP 103 (307)
Q Consensus 41 ~lPilGn~~~l-~-~~~~~~~~~~~~kYG~i~~~~lg~------~~~Vvv~~~e~~~evl~-~~~~~f~~R~ 103 (307)
.--++||+..- . ..+.+.+.+++.+||+|..+++-. .=.|...+++.++.++. -++..+.+|+
T Consensus 10 ~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 10 HTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34578998643 2 233344668899999999887532 34778889999999884 3454555554
No 235
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=32.48 E-value=22 Score=23.93 Aligned_cols=58 Identities=12% Similarity=0.238 Sum_probs=39.2
Q ss_pred CcccccccCCCCchHHHHHHHHhhCCceEEecCC--------cCEEEecCHHHHHHHHHhcCcccCCCC
Q 043529 43 PIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS--------FPVVVGSSVEMAEAFLKTHDALFSYRP 103 (307)
Q Consensus 43 PilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~--------~~~Vvv~~~e~~~evl~~~~~~f~~R~ 103 (307)
-++||+..- --...+.+++.+||+|..+++.. .=.|...+++.++.++. ++..+.+++
T Consensus 12 l~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~ 77 (102)
T 2xs2_A 12 VFVGGIDVR--MDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKK 77 (102)
T ss_dssp EEEECCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEE
T ss_pred EEEeCCCCC--CCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEE
Confidence 467877532 12345778889999998887632 22567778899998887 555555543
No 236
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=32.02 E-value=49 Score=24.99 Aligned_cols=58 Identities=12% Similarity=0.216 Sum_probs=38.1
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCCc---------CEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 44 IIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSF---------PVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 44 ilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~---------~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
++||++.- .....+.++..+||+|..+++... =.|-..+++.+..++.. ++..+.+|+
T Consensus 118 ~v~nl~~~--~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 185 (198)
T 2yh0_A 118 FIGGLPNY--LNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKK 185 (198)
T ss_dssp EEECCCTT--CCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEE
T ss_pred EEeCCCCC--CCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 45555432 124567888899999988876432 25677888899888864 555555543
No 237
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=31.24 E-value=1.2e+02 Score=25.92 Aligned_cols=60 Identities=13% Similarity=0.058 Sum_probs=41.5
Q ss_pred CCCCCCCCCcccccccCCCCchHHHHHHHHhhCCceEEecCC---cCEEEecCHHHHHHHHHh
Q 043529 35 LPPGPKPWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---FPVVVGSSVEMAEAFLKT 94 (307)
Q Consensus 35 lpPgP~~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---~~~Vvv~~~e~~~evl~~ 94 (307)
.+.-|..--++||+-.-...-...+.+.+.+||.|-.+.+.. .=.|-..+.+.|+.+...
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~ 75 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVT 75 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHH
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 345566667899962211123456788899999999998742 236777899999998864
No 238
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=30.37 E-value=55 Score=16.14 Aligned_cols=16 Identities=13% Similarity=0.067 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 043529 10 YYLAAWLATLALILLS 25 (307)
Q Consensus 10 ~~~~~~~~~~~~~~l~ 25 (307)
+++...+++.+++|++
T Consensus 9 lLIviav~aaVllylW 24 (26)
T 3j1r_A 9 LLILIAVAAAVLLYTW 24 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444554
No 239
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.76 E-value=69 Score=20.53 Aligned_cols=48 Identities=15% Similarity=0.233 Sum_probs=34.4
Q ss_pred CcccccccCCCCchHHHHHHHHhhCCceEEecC----CcCEEEecCHHHHHHHH
Q 043529 43 PIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFG----SFPVVVGSSVEMAEAFL 92 (307)
Q Consensus 43 PilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg----~~~~Vvv~~~e~~~evl 92 (307)
-++||++.-. -...+.+++.+||+|-.+++. +.=.|...+++.++++.
T Consensus 8 l~V~nLp~~~--te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~ 59 (88)
T 1wf0_A 8 VFVGRCTGDM--TEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLC 59 (88)
T ss_dssp EEEESCCSSS--CHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTT
T ss_pred EEEeCCCCCC--CHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHh
Confidence 4678875421 234677888999999998874 23478888999997653
No 240
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=29.63 E-value=35 Score=24.77 Aligned_cols=58 Identities=12% Similarity=0.013 Sum_probs=38.6
Q ss_pred CcccccccCCCCchHHHHHHHHhhCC---ceEEecC-----C---cCEEEecCHHHHHHHHHhcCcccCCC
Q 043529 43 PIIGNLNLIGPLPYRSIHALSEKYGP---IMQLKFG-----S---FPVVVGSSVEMAEAFLKTHDALFSYR 102 (307)
Q Consensus 43 PilGn~~~l~~~~~~~~~~~~~kYG~---i~~~~lg-----~---~~~Vvv~~~e~~~evl~~~~~~f~~R 102 (307)
-++||+..-. -...+.+++.+||. |-.+++. . .=.|...+++.++.++..++..+.+|
T Consensus 47 lfVgnLp~~~--te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr 115 (136)
T 2hgl_A 47 VKLRGLPWSC--SVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHR 115 (136)
T ss_dssp EEEESCCTTC--CHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSS
T ss_pred EEEeCCCCCC--CHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCE
Confidence 4678875432 23467888899998 5555442 1 23788899999999997555555554
No 241
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=29.34 E-value=1.3e+02 Score=20.32 Aligned_cols=52 Identities=17% Similarity=-0.014 Sum_probs=37.4
Q ss_pred CCCcccccccCCCCchHHHHHHHHhhCCceEEecC---CcCEEEecCHHHHHHHHHh
Q 043529 41 PWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFG---SFPVVVGSSVEMAEAFLKT 94 (307)
Q Consensus 41 ~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg---~~~~Vvv~~~e~~~evl~~ 94 (307)
..-++||+..-. --..+.+++.+||+|-.+.+. +.=.|-..+.+.|+.++..
T Consensus 22 ~~l~V~NLp~~~--te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ 76 (100)
T 3r27_A 22 PVVHIRGLIDGV--VEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNY 76 (100)
T ss_dssp SEEEEESCCTTC--CHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred cEEEEeCCCCCC--CHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHH
Confidence 446788886421 234577889999999888763 3447777899999988753
No 242
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=29.07 E-value=1.1e+02 Score=23.67 Aligned_cols=60 Identities=10% Similarity=0.058 Sum_probs=42.2
Q ss_pred CCcccccc-cCCCCchHHHHHHHHhhCCceEEecC----CcCEEEecCHHHHHHHHH-hcCcccCCCC
Q 043529 42 WPIIGNLN-LIGPLPYRSIHALSEKYGPIMQLKFG----SFPVVVGSSVEMAEAFLK-THDALFSYRP 103 (307)
Q Consensus 42 lPilGn~~-~l~~~~~~~~~~~~~kYG~i~~~~lg----~~~~Vvv~~~e~~~evl~-~~~~~f~~R~ 103 (307)
.-++||+. .-. -...+.+++.+||+|..+++- +.=.|...+++.|+.++. -++..+.+|+
T Consensus 6 ~l~V~nL~~~~~--~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 71 (205)
T 3tyt_A 6 VLMVYGLDQSKM--NCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQK 71 (205)
T ss_dssp EEEEECCCTTTC--CHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEeCCCcccC--CHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCce
Confidence 35688885 321 234677889999999999864 234788889999998875 3555665554
No 243
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.36 E-value=65 Score=21.87 Aligned_cols=48 Identities=15% Similarity=0.116 Sum_probs=34.4
Q ss_pred chHHHHHHHHhhCCceEEecC-CcCEEEecCHHHHHHHHHhcCcccCCC
Q 043529 55 PYRSIHALSEKYGPIMQLKFG-SFPVVVGSSVEMAEAFLKTHDALFSYR 102 (307)
Q Consensus 55 ~~~~~~~~~~kYG~i~~~~lg-~~~~Vvv~~~e~~~evl~~~~~~f~~R 102 (307)
....+.+...+||.+..+++- .+-.|...|.+.|..++.-++..+.+|
T Consensus 37 l~~~L~~~F~~~G~Vilvr~v~d~~fVtF~d~~sAl~AI~ldG~~v~Gr 85 (95)
T 1ufw_A 37 LRTELMQTLGSYGTIVLVRINQGQMLVTFADSHSALSVLDVDGMKVKGR 85 (95)
T ss_dssp HHHHHHHHHHHHSCCSEEEEETTEEEEECSCSHHHHHHHHGGGSEETTE
T ss_pred HHHHHHHHHHHCCCEEEEEEecCcEEEEEcChHHHHHHHhcCCeeeCCe
Confidence 345566777889998888864 445666678999988887666555554
No 244
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=27.13 E-value=78 Score=20.30 Aligned_cols=57 Identities=16% Similarity=0.183 Sum_probs=36.2
Q ss_pred cccccccCCCCchHHHHHHHHhhCCceEEecCCc---------CEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 44 IIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSF---------PVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 44 ilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~---------~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
++||+..- -....+.++..+||+|..+++... =.|...+++ ++.++.. ++..+.+|+
T Consensus 5 ~V~nLp~~--~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~ 71 (90)
T 2ki2_A 5 YVGNLVYS--ATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRT 71 (90)
T ss_dssp EEEEECTT--SSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSS
T ss_pred EECCCCCC--CCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeE
Confidence 46776432 123456777889999988876421 256778888 8887764 444555554
No 245
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=26.85 E-value=35 Score=23.77 Aligned_cols=58 Identities=12% Similarity=0.033 Sum_probs=39.0
Q ss_pred CcccccccCCCCchHHHHHHHHhhCC---ceEEecC-----C---cCEEEecCHHHHHHHHHhcCcccCCC
Q 043529 43 PIIGNLNLIGPLPYRSIHALSEKYGP---IMQLKFG-----S---FPVVVGSSVEMAEAFLKTHDALFSYR 102 (307)
Q Consensus 43 PilGn~~~l~~~~~~~~~~~~~kYG~---i~~~~lg-----~---~~~Vvv~~~e~~~evl~~~~~~f~~R 102 (307)
-++||+..-. -...+.+++.+||. |..+++. . .-.|...+++.++.++..++..+.+|
T Consensus 20 l~V~nLp~~~--te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr 88 (118)
T 2db1_A 20 VKLRGLPWSC--SIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHR 88 (118)
T ss_dssp EEEESCCTTC--CHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTE
T ss_pred EEEeCCCCCC--CHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCe
Confidence 4678875432 23457788899998 6665542 1 23788899999999998655555444
No 246
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.62 E-value=83 Score=21.61 Aligned_cols=57 Identities=11% Similarity=-0.016 Sum_probs=38.8
Q ss_pred CcccccccCCCCchHHHHHHHHhhCCceEEecCC--------cCEEEecCHHHHHHHHHhcCcccCCC
Q 043529 43 PIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS--------FPVVVGSSVEMAEAFLKTHDALFSYR 102 (307)
Q Consensus 43 PilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~--------~~~Vvv~~~e~~~evl~~~~~~f~~R 102 (307)
-++|||..-. -...+.+++.+| .|..+++.. .=.|...+++.++.++..++..+.+|
T Consensus 19 v~V~nLp~~~--te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr 83 (109)
T 2dnn_A 19 VSVHGMPFSA--MENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQR 83 (109)
T ss_dssp EEEECCCSSC--CHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTE
T ss_pred EEEeCCCCCC--CHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCe
Confidence 4677775431 234677888889 777776531 23788899999999997666555555
No 247
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=26.48 E-value=26 Score=24.09 Aligned_cols=38 Identities=16% Similarity=0.072 Sum_probs=30.1
Q ss_pred hHHHHHHHHhhCCceEEecCCc-CEEEecCHHHHHHHHH
Q 043529 56 YRSIHALSEKYGPIMQLKFGSF-PVVVGSSVEMAEAFLK 93 (307)
Q Consensus 56 ~~~~~~~~~kYG~i~~~~lg~~-~~Vvv~~~e~~~evl~ 93 (307)
..-+.+++..||.+.=-|+... =.|++++++.|++++.
T Consensus 19 t~Di~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 19 TSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp HHHHHHHTTTSEEEEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred hHHHHHHHhccCCEEEEEEcCCeEEEEecCHHHHHHHHH
Confidence 4457778889997766677764 4788999999999996
No 248
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=25.77 E-value=1.6e+02 Score=23.72 Aligned_cols=38 Identities=11% Similarity=0.005 Sum_probs=29.4
Q ss_pred hHHHHHHHHhhCCceEEecCC----cCEEEecCHHHHHHHHH
Q 043529 56 YRSIHALSEKYGPIMQLKFGS----FPVVVGSSVEMAEAFLK 93 (307)
Q Consensus 56 ~~~~~~~~~kYG~i~~~~lg~----~~~Vvv~~~e~~~evl~ 93 (307)
...+.+++.+||+|..+++.. .=.|-..+.+.+..++.
T Consensus 221 ~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~ 262 (282)
T 3pgw_A 221 ELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARD 262 (282)
T ss_pred HHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHH
Confidence 456788899999999888632 23666788999998886
No 249
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=25.73 E-value=1.5e+02 Score=21.18 Aligned_cols=58 Identities=16% Similarity=0.075 Sum_probs=39.0
Q ss_pred CcccccccCCCCchHHHHHHHHhhCCceEEecCCc---------CEEEecCHHHHHHHHHh-cCcccCCC
Q 043529 43 PIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSF---------PVVVGSSVEMAEAFLKT-HDALFSYR 102 (307)
Q Consensus 43 PilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~---------~~Vvv~~~e~~~evl~~-~~~~f~~R 102 (307)
-++||++.- .....+.++..+||+|..+.+... =.|-..+++.|..++.. ++..+.+|
T Consensus 91 l~v~nl~~~--~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 158 (167)
T 1fxl_A 91 LYVSGLPKT--MTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 158 (167)
T ss_dssp EEEESCCTT--CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred EEECCCCCc--CCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 356666432 124567888999999988876322 26777899999998863 45555554
No 250
>1b35_D CRPV, protein (cricket paralysis virus, VP4); insect picorna-like virus, icosahedral virus; 2.40A {Cricket paralysis virus} SCOP: b.121.4.1
Probab=25.01 E-value=31 Score=20.12 Aligned_cols=11 Identities=27% Similarity=0.546 Sum_probs=8.3
Q ss_pred CCCcccccccC
Q 043529 41 PWPIIGNLNLI 51 (307)
Q Consensus 41 ~lPilGn~~~l 51 (307)
..|++||++.-
T Consensus 30 ~ipilgn~fs~ 40 (57)
T 1b35_D 30 HIPVLGNIFST 40 (57)
T ss_dssp CCCCSCCSSSS
T ss_pred ccccccccccc
Confidence 47999998643
No 251
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=24.74 E-value=1.2e+02 Score=23.05 Aligned_cols=59 Identities=8% Similarity=0.041 Sum_probs=40.5
Q ss_pred CcccccccCCCCchHHHHHHHHhhCCceEEecCCc---------CEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 43 PIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSF---------PVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 43 PilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~---------~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
-++||+..- .....+.+++.+||+|..+++... =.|-..+++.|..++.. ++..+.+|+
T Consensus 128 l~v~nlp~~--~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 196 (216)
T 2qfj_A 128 IYVASVHQD--LSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQY 196 (216)
T ss_dssp EEEECCCTT--CCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSB
T ss_pred EEEeCCCCc--CCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcE
Confidence 356666432 224567888999999988876432 26778899999999873 555666654
No 252
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.73 E-value=44 Score=23.40 Aligned_cols=61 Identities=13% Similarity=0.061 Sum_probs=38.1
Q ss_pred CCCcccccccCCCCchHHHHHHHHhhCCceE---Eec---CC---cCEEEecCHHHHHHHHHhcCcccCCCC
Q 043529 41 PWPIIGNLNLIGPLPYRSIHALSEKYGPIMQ---LKF---GS---FPVVVGSSVEMAEAFLKTHDALFSYRP 103 (307)
Q Consensus 41 ~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~---~~l---g~---~~~Vvv~~~e~~~evl~~~~~~f~~R~ 103 (307)
.--++||+..-. -...+.+++.+||+|.. +.. |. .=.|...+++.++.++..++..+.+|+
T Consensus 26 ~~l~V~nLp~~~--te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~ 95 (124)
T 1wel_A 26 FCVYLKGLPFEA--ENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRF 95 (124)
T ss_dssp CEEEEECCCTTC--CHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSC
T ss_pred cEEEEeCCCCCC--CHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcE
Confidence 344678875431 23467788899998632 221 11 236777899999999875555555543
No 253
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=24.60 E-value=39 Score=22.12 Aligned_cols=60 Identities=17% Similarity=0.022 Sum_probs=37.7
Q ss_pred CCcccccccCCCCchHHHHHHHHhhCCceEEecC---------CcCEEEecCHHHHHHHHHh-cCcccCCCC
Q 043529 42 WPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFG---------SFPVVVGSSVEMAEAFLKT-HDALFSYRP 103 (307)
Q Consensus 42 lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg---------~~~~Vvv~~~e~~~evl~~-~~~~f~~R~ 103 (307)
--++||++.- .....+.+++.+||+|..+.+. +.-.|...+++.++.++.. ++..+.+|+
T Consensus 17 ~l~V~nlp~~--~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 86 (95)
T 2ek1_A 17 VIKVQNMPFT--VSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (95)
T ss_dssp EEEEECCCTT--CCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEeCCCCC--CCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcE
Confidence 3467887532 1234677888999987533221 1236777899999999864 555555553
No 254
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=23.97 E-value=1.4e+02 Score=22.35 Aligned_cols=58 Identities=19% Similarity=0.201 Sum_probs=41.2
Q ss_pred ccccccc-CCCCchHHHHHHHHhhCCceEEecC----CcCEEEecCHHHHHHHHH-hcCcccCCCC
Q 043529 44 IIGNLNL-IGPLPYRSIHALSEKYGPIMQLKFG----SFPVVVGSSVEMAEAFLK-THDALFSYRP 103 (307)
Q Consensus 44 ilGn~~~-l~~~~~~~~~~~~~kYG~i~~~~lg----~~~~Vvv~~~e~~~evl~-~~~~~f~~R~ 103 (307)
++||+.. -. ....+.++..+||+|..+++- +.=.|...+++.|+.++. -++..+.+|+
T Consensus 7 ~v~nlp~~~~--~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 70 (198)
T 1qm9_A 7 LVSNLNPERV--TPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKP 70 (198)
T ss_dssp EEECCCSSSC--CHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCC
T ss_pred EEeCCCcccC--CHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeE
Confidence 5677643 21 235678889999999998874 234788889999999886 4565666654
No 255
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=23.94 E-value=1.7e+02 Score=20.13 Aligned_cols=50 Identities=24% Similarity=0.257 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCHHHHHhhhcCCCCccccCchHHHHHHHHHHhhcc
Q 043529 247 RLFEYELDEHNARRKGVDNYEAKDMMDVLLQLADDPTLEVKLERHSLKAVTQNSCRYG 304 (307)
Q Consensus 247 ~~~~~~i~~~~~~~~~~~~~~~~d~ld~ll~~~~~~~~~~~lt~~~i~~~~~~l~~aG 304 (307)
.++.++++--+.-+. ++.+..|++-.|-=+ . ..||++||...+..+.--|
T Consensus 6 ~~l~siv~WLRaGYP--~GVP~~Dy~PLlALL-~-----r~Ltdeev~~Va~~L~~~~ 55 (103)
T 2kvc_A 6 RFLTSIVAWLRAGYP--EGIPPTDSFAVLALL-C-----RRLSHDEVKAVANELMRLG 55 (103)
T ss_dssp HHHHHHHHHHHHHCT--TCCCHHHHHHHHHHH-T-----TTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCC--CCCCCcchHHHHHHH-h-----ccCCHHHHHHHHHHHHHcC
Confidence 355566666666563 344456666443221 1 2477777777776665443
No 256
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=23.58 E-value=1.4e+02 Score=21.52 Aligned_cols=58 Identities=17% Similarity=0.111 Sum_probs=38.4
Q ss_pred CCcccccccCCCCchHHHHHHHHhhCCceEEecCCcC---------EEEecCHHHHHHHHH-hcCcccCC
Q 043529 42 WPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGSFP---------VVVGSSVEMAEAFLK-THDALFSY 101 (307)
Q Consensus 42 lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~~~---------~Vvv~~~e~~~evl~-~~~~~f~~ 101 (307)
--++||++.- .....+.++..+||+|..+.+...+ .|-..+++.|..++. -++..+.+
T Consensus 91 ~l~v~nl~~~--~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 91 NLYVTNLPRT--ITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 158 (168)
T ss_dssp EEEEESCCTT--CCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CEEEeCCCCC--CCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence 3456776432 2345678888999999887764322 677789999999886 34444433
No 257
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=22.88 E-value=1.6e+02 Score=21.36 Aligned_cols=59 Identities=14% Similarity=0.239 Sum_probs=38.3
Q ss_pred CcccccccCCCCchHHHHHHHHhh----C-------CceEEecCC---cCEEEecCHHHHHHHHHhcCcccCCCC
Q 043529 43 PIIGNLNLIGPLPYRSIHALSEKY----G-------PIMQLKFGS---FPVVVGSSVEMAEAFLKTHDALFSYRP 103 (307)
Q Consensus 43 PilGn~~~l~~~~~~~~~~~~~kY----G-------~i~~~~lg~---~~~Vvv~~~e~~~evl~~~~~~f~~R~ 103 (307)
-++||++.-. -...+.++..+| | +|...+++. .=.|...+++.|+.++.-++..+.+|+
T Consensus 7 l~V~nLp~~~--t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~ 79 (172)
T 2g4b_A 7 LYVGNIPFGI--TEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQS 79 (172)
T ss_dssp EEEESCCTTC--CHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEE
T ss_pred EEEcCCCccc--CHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCce
Confidence 3577775421 233456666777 7 788777753 236778899999999855555555553
No 258
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=22.75 E-value=2.1e+02 Score=20.25 Aligned_cols=63 Identities=16% Similarity=0.133 Sum_probs=40.5
Q ss_pred CCCCCcccccccCCCCchHHHHHHHHhhCCceE--------E---ecCC---cCEEEecCHHHHHHHHH-hcCcccCCCC
Q 043529 39 PKPWPIIGNLNLIGPLPYRSIHALSEKYGPIMQ--------L---KFGS---FPVVVGSSVEMAEAFLK-THDALFSYRP 103 (307)
Q Consensus 39 P~~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~--------~---~lg~---~~~Vvv~~~e~~~evl~-~~~~~f~~R~ 103 (307)
|..--++||+..-. -...+.+++.+||+|.. + .-|. .=.|...+++.|+.++. -++..+.+|+
T Consensus 44 ~~~~l~V~nLp~~~--te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 44 PNCRIYVKNLAKHV--QEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CCSEEEEEEECTTC--CHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCEEEEeCCCCCC--CHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 44456788886431 24467788999998743 2 2232 23677789999999886 3555665554
No 259
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=22.23 E-value=1.2e+02 Score=24.33 Aligned_cols=59 Identities=22% Similarity=0.254 Sum_probs=41.3
Q ss_pred CcccccccCCCCchHHHHHHHHhhCCceEEecCC---cCEEEecCHHHHHHHHH-hcCcccCCCC
Q 043529 43 PIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS---FPVVVGSSVEMAEAFLK-THDALFSYRP 103 (307)
Q Consensus 43 PilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~---~~~Vvv~~~e~~~evl~-~~~~~f~~R~ 103 (307)
-++||++.-. -...+.+++.+||+|..++++. .=.|-..+++.|+.++. -++..+.+|+
T Consensus 25 l~V~nLp~~~--te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~ 87 (261)
T 3sde_A 25 LFVGNLPTDI--TEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRP 87 (261)
T ss_dssp EEEESCCTTC--CHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEECCCCCC--CHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCce
Confidence 3677775321 2346778889999999998763 23677889999999886 3555555554
No 260
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.55 E-value=1.6e+02 Score=19.73 Aligned_cols=59 Identities=15% Similarity=0.149 Sum_probs=39.3
Q ss_pred CCcccccccCCCCchHHHHHHHHhhCCceEEecCC--------cCEEEecCHHHHHHHHH-hcCcccCCC
Q 043529 42 WPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS--------FPVVVGSSVEMAEAFLK-THDALFSYR 102 (307)
Q Consensus 42 lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~--------~~~Vvv~~~e~~~evl~-~~~~~f~~R 102 (307)
--++||++.-. -...+.+++.+||+|..+++.. .=.|...+++.++.++. -++..+..+
T Consensus 27 ~l~V~nlp~~~--t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~ 94 (114)
T 1x5o_A 27 NLYISNLPLSM--DEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTP 94 (114)
T ss_dssp EEEEESCCTTC--CHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCC
T ss_pred EEEEeCCCCCC--CHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCC
Confidence 34678875321 2345778889999998887632 23567789999999886 344455443
No 261
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=21.48 E-value=1e+02 Score=20.48 Aligned_cols=50 Identities=20% Similarity=0.135 Sum_probs=33.6
Q ss_pred CcccccccCCCCchHHHHHHHHhhCC--ceEEecCC-----c----CEEEecCHHHHHHHHHh
Q 043529 43 PIIGNLNLIGPLPYRSIHALSEKYGP--IMQLKFGS-----F----PVVVGSSVEMAEAFLKT 94 (307)
Q Consensus 43 PilGn~~~l~~~~~~~~~~~~~kYG~--i~~~~lg~-----~----~~Vvv~~~e~~~evl~~ 94 (307)
-++||+..-. -...+.+.+.+||+ +..+++.. . =.|-..+++.|+.++..
T Consensus 12 lfV~nL~~~~--tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~ 72 (95)
T 2lkz_A 12 IILRNIAPHT--VVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQI 72 (95)
T ss_dssp EEEESCCTTC--CHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHH
T ss_pred EEEeCCCCcC--CHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHH
Confidence 4677775431 24568888899995 55666532 1 26788899999988853
No 262
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.30 E-value=1.3e+02 Score=19.25 Aligned_cols=60 Identities=10% Similarity=-0.011 Sum_probs=39.7
Q ss_pred CCCcccccccCCCCchHHHHHHHHhhCCceEEecCC--------cCEEEecCHHHHHHHHHhcCcccCCCC
Q 043529 41 PWPIIGNLNLIGPLPYRSIHALSEKYGPIMQLKFGS--------FPVVVGSSVEMAEAFLKTHDALFSYRP 103 (307)
Q Consensus 41 ~lPilGn~~~l~~~~~~~~~~~~~kYG~i~~~~lg~--------~~~Vvv~~~e~~~evl~~~~~~f~~R~ 103 (307)
.--++||++.-. -...+.+++.+| +|..+++.. .-.|...+++.++.++..++..+.+|+
T Consensus 11 ~~l~v~nLp~~~--t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~ 78 (91)
T 2dgw_A 11 HTVKLRGAPFNV--TEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRY 78 (91)
T ss_dssp CEEEEECCCSSC--CHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEE
T ss_pred cEEEEECCCCCC--CHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcE
Confidence 344688875431 234577888889 787776521 236777899999999985555555553
Done!