BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043533
(301 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 242 bits (618), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 137/355 (38%), Positives = 184/355 (51%), Gaps = 61/355 (17%)
Query: 5 QDQGAKELFQGQAQLYKLI-----------------------HGRAITLSELVSALDIQP 41
++ E+F+ QA LYK + HG+ ITLS LVS L I
Sbjct: 6 NNRKPSEIFKAQALLYKNMYAFVDSMSLKWSIEMNIPNIIHNHGKPITLSNLVSILQIPS 65
Query: 42 TKTT----------------------VNGQEEAYGLTAASTLLIKDKPYCLSPTVSVFVD 79
TK + +EEAY LT AS LL+K CL+P V +D
Sbjct: 66 TKVDNVQRLMRYLAHNGFFEIITNQELENEEEAYALTVASELLVKGTELCLAPMVECVLD 125
Query: 80 PFFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVV 139
P F +L W +LTL+ G WEF+N+NP N +N+A+ASDS+++ +
Sbjct: 126 PTLSTSFHNLKKWVYEEDLTLFAVNLGCDLWEFLNKNPEYNTLYNDALASDSKMIN--LA 183
Query: 140 KSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAG 199
+C +FEGL S+VDVGGGN + +II E FP + C V D P V NL ++NL Y+ G
Sbjct: 184 MKDCNLVFEGLESIVDVGGGNGTTGKIICETFPKLTCVVFDRPKVVENLCGSNNLTYVGG 243
Query: 200 DMLRFIPPANAFLF-------------KILKKRREAIASNGERGKVIIIDIVINAXXXXX 246
DM +P A+A L KILKK +EA+ S+G+RGKVI+ID+VIN
Sbjct: 244 DMFISVPKADAVLLKAVLHDWTDKDCIKILKKCKEAVTSDGKRGKVIVIDMVINEKKDEN 303
Query: 247 XXXXXKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIFGMKSLIEVYP 301
K L ++ +S GKER E EW KLF +A F YKI+P G+ SLIE+YP
Sbjct: 304 QLTQIKLLMNVTISC-VNGKERNEEEWKKLFIEAGFQDYKISPFTGLMSLIEIYP 357
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 239 bits (609), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 133/344 (38%), Positives = 183/344 (53%), Gaps = 56/344 (16%)
Query: 11 ELFQGQAQLYKLI-----------------------HGRAITLSELVSALDIQPTKT--- 44
E+F+ QA LYK I HG+ I+LS LVS L + +K
Sbjct: 12 EIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNV 71
Query: 45 --------------TVNGQEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPFQSLS 90
+ +EE+Y LT AS LL++ CL+P V +DP + L
Sbjct: 72 RRLMRYLAHNGFFEIITKEEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELK 131
Query: 91 SWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQIFEGL 150
W +LTL+ G FW+F+++NP N FN+AMASDS+++ + +C +F+GL
Sbjct: 132 KWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLIN--LALRDCDFVFDGL 189
Query: 151 GSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLRFIPPANA 210
S+VDVGGG + ++II E FP +KC V D P V NL ++NL Y+ GDM IP A+A
Sbjct: 190 ESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADA 249
Query: 211 FLFK-------------ILKKRREAIASNGERGKVIIIDIVINAXXXXXXXXXXKFLFDI 257
L K ILKK +EA+ ++G+RGKV IID+VI+ K L D+
Sbjct: 250 VLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDV 309
Query: 258 VMSVNATGKERTESEWAKLFFDAVFSHYKITPIFGMKSLIEVYP 301
M+ GKER E EW KLF +A F HYKI+P+ G SLIE+YP
Sbjct: 310 NMAC-LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 229 bits (583), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 130/344 (37%), Positives = 179/344 (52%), Gaps = 56/344 (16%)
Query: 11 ELFQGQAQLYKLI-----------------------HGRAITLSELVSALDIQPTKT--- 44
E+F+ QA LYK I HG+ I+LS LVS L + +K
Sbjct: 12 EIFKAQALLYKHIYAFIDSXSLKWAVEXNIPNIIQNHGKPISLSNLVSILQVPSSKIGNV 71
Query: 45 --------------TVNGQEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPFQSLS 90
+ +EE+Y LT AS LL++ CL+P V +DP + L
Sbjct: 72 RRLXRYLAHNGFFEIITKEEESYALTVASELLVRGSDLCLAPXVECVLDPTLSGSYHELK 131
Query: 91 SWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQIFEGL 150
W +LTL+ G FW+F+++NP N FN+A ASDS+++ + +C +F+GL
Sbjct: 132 KWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAXASDSKLIN--LALRDCDFVFDGL 189
Query: 151 GSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLRFIPPANA 210
S+VDVGGG + ++II E FP +KC V D P V NL ++NL Y+ GD IP A+A
Sbjct: 190 ESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDXFTSIPNADA 249
Query: 211 FLFK-------------ILKKRREAIASNGERGKVIIIDIVINAXXXXXXXXXXKFLFDI 257
L K ILKK +EA+ ++G+RGKV IID VI+ K L D+
Sbjct: 250 VLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDXVIDKKKDENQVTQIKLLXDV 309
Query: 258 VMSVNATGKERTESEWAKLFFDAVFSHYKITPIFGMKSLIEVYP 301
+ GKER E EW KLF +A F HYKI+P+ G SLIE+YP
Sbjct: 310 NXAC-LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 140/355 (39%), Positives = 182/355 (51%), Gaps = 66/355 (18%)
Query: 11 ELFQGQAQLYKLI-----------------------HGRAITLSELVSALDIQPTKTTV- 46
EL+ Q LYK + HG+ +TLSEL S+L + P+K +
Sbjct: 2 ELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNIL 61
Query: 47 ---------NG---------------QEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFF 82
NG +E AY LT S LLI KP CLS V + P
Sbjct: 62 HRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSS 121
Query: 83 VAPFQSLSSWF-KGTELTLWETVHGIKFWEFMNQNPAIN--QRFNEAMASDSEIMTSFVV 139
+ + S WF + E TL+E G FW+F+N++ + F +AMASDS + +V
Sbjct: 122 LDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFK--LV 179
Query: 140 KSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAG 199
E K++FEGL SLVDVGGG +++I E FP +KCTV D P V NL +NL ++ G
Sbjct: 180 LQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGG 239
Query: 200 DMLRFIPPANAFLFK-------------ILKKRREAIASNGERGKVIIIDIVINAXXXXX 246
DM + IP A+A L K ILK +EAI+ G+ GKVIIIDI I+
Sbjct: 240 DMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDR 299
Query: 247 XXXXXKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIFGMKSLIEVYP 301
+ +D+VM GKERT+ EW KL +DA FS YKITPI G KSLIEVYP
Sbjct: 300 GLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 354
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 209 bits (531), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 140/355 (39%), Positives = 182/355 (51%), Gaps = 66/355 (18%)
Query: 11 ELFQGQAQLYKLI-----------------------HGRAITLSELVSALDIQPTKTTV- 46
EL+ Q LYK + HG+ +TLSEL S+L + P+K +
Sbjct: 5 ELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNIL 64
Query: 47 ---------NG---------------QEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFF 82
NG +E AY LT S LLI KP CLS V + P
Sbjct: 65 HRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSS 124
Query: 83 VAPFQSLSSWF-KGTELTLWETVHGIKFWEFMNQNPAIN--QRFNEAMASDSEIMTSFVV 139
+ + S WF + E TL+E G FW+F+N++ + F +AMASDS + +V
Sbjct: 125 LDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFK--LV 182
Query: 140 KSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAG 199
E K++FEGL SLVDVGGG +++I E FP +KCTV D P V NL +NL ++ G
Sbjct: 183 LQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGG 242
Query: 200 DMLRFIPPANAFLFK-------------ILKKRREAIASNGERGKVIIIDIVINAXXXXX 246
DM + IP A+A L K ILK +EAI+ G+ GKVIIIDI I+
Sbjct: 243 DMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDR 302
Query: 247 XXXXXKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIFGMKSLIEVYP 301
+ +D+VM GKERT+ EW KL +DA FS YKITPI G KSLIEVYP
Sbjct: 303 GLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 357
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 209 bits (531), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 140/355 (39%), Positives = 182/355 (51%), Gaps = 66/355 (18%)
Query: 11 ELFQGQAQLYKLI-----------------------HGRAITLSELVSALDIQPTKTTV- 46
EL+ Q LYK + HG+ +TLSEL S+L + P+K +
Sbjct: 6 ELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNIL 65
Query: 47 ---------NG---------------QEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFF 82
NG +E AY LT S LLI KP CLS V + P
Sbjct: 66 HRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSS 125
Query: 83 VAPFQSLSSWF-KGTELTLWETVHGIKFWEFMNQNPAIN--QRFNEAMASDSEIMTSFVV 139
+ + S WF + E TL+E G FW+F+N++ + F +AMASDS + +V
Sbjct: 126 LDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFK--LV 183
Query: 140 KSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAG 199
E K++FEGL SLVDVGGG +++I E FP +KCTV D P V NL +NL ++ G
Sbjct: 184 LQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGG 243
Query: 200 DMLRFIPPANAFLFK-------------ILKKRREAIASNGERGKVIIIDIVINAXXXXX 246
DM + IP A+A L K ILK +EAI+ G+ GKVIIIDI I+
Sbjct: 244 DMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDR 303
Query: 247 XXXXXKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIFGMKSLIEVYP 301
+ +D+VM GKERT+ EW KL +DA FS YKITPI G KSLIEVYP
Sbjct: 304 GLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 100 bits (249), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 120/260 (46%), Gaps = 31/260 (11%)
Query: 48 GQEEAYGLTAASTLLIKDKPYCLSPTVSVFVD-PFFVAPFQSLSSWFKGTELTLWETVHG 106
G E YGL+ L+ D+ + + F+ P + + + ++ L++ VHG
Sbjct: 109 GAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHG 168
Query: 107 IKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQI------FEGLGSLVDVGGGN 160
+ +EFM ++ +NQ FN++M V +E K++ FEG+ +LVDVGGG+
Sbjct: 169 VTKYEFMGKDKKMNQIFNKSMVD--------VCATEMKRMLEIYTGFEGISTLVDVGGGS 220
Query: 161 VSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLRFIPPANAFLFK------ 214
+I +P IK DLP + N P ++++ GDM +P +A + K
Sbjct: 221 GRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNW 280
Query: 215 -------ILKKRREAIASNGERGKVIIIDIVINAXXXXXXXXXXKFLFDIVMSVNATGKE 267
L +A++ N GKVII++ ++ D +M + G+E
Sbjct: 281 SDEKCIEFLSNCHKALSPN---GKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRE 337
Query: 268 RTESEWAKLFFDAVFSHYKI 287
RTE ++ KL + FS +++
Sbjct: 338 RTEKQYEKLSKLSGFSKFQV 357
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 109/229 (47%), Gaps = 24/229 (10%)
Query: 89 LSSWFKGTELTL-----WETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSEC 143
+ SW+ + L + +G+ +E+ +P N+ FNE M + S I+T ++ E
Sbjct: 138 MESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLL--EL 195
Query: 144 KQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLR 203
FEGLG+LVDVGGG + I+ +P IK DLPH ++ P+ + ++ GDM +
Sbjct: 196 YHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFK 255
Query: 204 FIPPANAFLFK-------------ILKKRREAIASNGERGKVIIIDIVINAXXXXXXXXX 250
+P + L K +LK +A+ ++ GKV+++ ++
Sbjct: 256 EVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAH---GKVVLVQCILPVNPEANPSSQ 312
Query: 251 XKFLFDIVM-SVNATGKERTESEWAKLFFDAVFSHYKITPIFGMKSLIE 298
F D++M + N G+ER E E+ L A F+ K T I+ IE
Sbjct: 313 GVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAWAIE 361
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 113/255 (44%), Gaps = 25/255 (9%)
Query: 50 EEAYGLTAASTLLIKDK------PYCLSPTVSVFVDPFFVAPFQSLSSWFKGTELTLWET 103
E YGL L K++ P+ L T V ++P+F L +
Sbjct: 106 ERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIP------FNK 159
Query: 104 VHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQIFEGLGSLVDVGGGNVSF 163
+G+ +++ + IN+ FN+ M+S+S I ++ E FEGL ++VDVGGG +
Sbjct: 160 AYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKIL--EMYNGFEGLTTIVDVGGGTGAV 217
Query: 164 SRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLRFIPPANAFLFK--------- 214
+ +I +P I DLPH + + P ++++ GDM +P +A K
Sbjct: 218 ASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDE 277
Query: 215 -ILKKRREAIASNGERGKVIIIDIVINAXXXXXXXXXXKFLFDIVM-SVNATGKERTESE 272
LK + A+ + GKVI+ + ++ D +M + N GKERTE E
Sbjct: 278 HCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKE 337
Query: 273 WAKLFFDAVFSHYKI 287
+ L + F +K+
Sbjct: 338 FQALAMASGFRGFKV 352
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 117/265 (44%), Gaps = 30/265 (11%)
Query: 43 KTTVNGQ-EEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPFQSLSSWFKGTELTL- 100
+T +G+ + YGL + L+K++ VS+ + SW+ + L
Sbjct: 95 RTQQDGKVQRLYGLATVAKYLVKNED-----GVSISALNLMNQDKVLMESWYHLKDAVLD 149
Query: 101 ----WETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQIFEGLGSLVDV 156
+ +G+ +E+ +P N+ FN+ M+ S I ++ E FEGL SLVDV
Sbjct: 150 GGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKIL--ETYTGFEGLKSLVDV 207
Query: 157 GGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLRFIPPANA------ 210
GGG + I +P IK DLPH + + P ++++ GDM IP A+A
Sbjct: 208 GGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWI 267
Query: 211 -------FLFKILKKRREAIASNGERGKVIIIDIVINAXXXXXXXXXXKFLFDIVM-SVN 262
K LK EA+ N GKVI+ + ++ D++M + N
Sbjct: 268 CHDWSDEHCLKFLKNCYEALPDN---GKVIVAECILPVAPDSSLATKGVVHIDVIMLAHN 324
Query: 263 ATGKERTESEWAKLFFDAVFSHYKI 287
GKERT+ E+ L A F +K+
Sbjct: 325 PGGKERTQKEFEDLAKGAGFQGFKV 349
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 87.4 bits (215), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 114/260 (43%), Gaps = 31/260 (11%)
Query: 48 GQEEAYGLTAASTLLIKDKPYCLSPTVSVFVD-PFFVAPFQSLSSWFKGTELTLWETVHG 106
G E YGL+ L+ D+ + + F+ P + + + ++ L++ VHG
Sbjct: 109 GAERVYGLSXVGKYLVPDESRGYLASFTTFLCYPALLQVWXNFKEAVVDEDIDLFKNVHG 168
Query: 107 IKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQI------FEGLGSLVDVGGGN 160
+ +EF ++ NQ FN++ V +E K+ FEG+ +LVDVGGG+
Sbjct: 169 VTKYEFXGKDKKXNQIFNKSXVD--------VCATEXKRXLEIYTGFEGISTLVDVGGGS 220
Query: 161 VSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLRFIPPANAFLFK------ 214
+I +P IK DLP + N P ++++ GD +P +A + K
Sbjct: 221 GRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDXFASVPQGDAXILKAVCHNW 280
Query: 215 -------ILKKRREAIASNGERGKVIIIDIVINAXXXXXXXXXXKFLFDIVMSVNATGKE 267
L +A++ N GKVII++ ++ D + + G+E
Sbjct: 281 SDEKCIEFLSNCHKALSPN---GKVIIVEFILPEEPNTSEESKLVSTLDNLXFITVGGRE 337
Query: 268 RTESEWAKLFFDAVFSHYKI 287
RTE ++ KL + FS +++
Sbjct: 338 RTEKQYEKLSKLSGFSKFQV 357
>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GXO|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
Length = 369
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 105/253 (41%), Gaps = 37/253 (14%)
Query: 48 GQEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPFQSLSSWFKGTELTLWETVHGI 107
G ++ + A S +L+ D ++ P+ ++ L+ + E + + +G
Sbjct: 105 GHDDLFAQNALSAVLLPDPASPVATDARFQAAPWHWRAWEQLTHSVRTGEASF-DVANGT 163
Query: 108 KFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQI-----FEGLGSLVDVGGGNVS 162
FW+ +++P + FN A S V +E Q+ F G + VD+GGG S
Sbjct: 164 SFWQLTHEDPKARELFNRAXGS--------VSLTEAGQVAAAYDFSGAATAVDIGGGRGS 215
Query: 163 FSRIISEAFPGIKCTVLDLPHAVANLPE-------ADNLKYIAGDMLRFIPP-ANAFLFK 214
+ +AFPG++ T+L+ P E AD + + GD IP A+ +L K
Sbjct: 216 LXAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIK 275
Query: 215 ----------ILKKRREAIASNGERGKVIIIDIVINAXXXXXXXXXXKFLFDIVMSVNAT 264
+++ R + ++++ID +I+ ++ V
Sbjct: 276 HVLHDWDDDDVVRILRRIATAXKPDSRLLVIDNLIDERPAASTLFVDL-----LLLVLVG 330
Query: 265 GKERTESEWAKLF 277
G ER+ESE+A L
Sbjct: 331 GAERSESEFAALL 343
>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm
pdb|2IP2|B Chain B, Structure Of The Pyocyanin Biosynthetic Protein Phzm
Length = 334
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 109/263 (41%), Gaps = 38/263 (14%)
Query: 50 EEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPFQSLSSWFKGTELTLWETVHGIKF 109
+ Y T S LL +D V + + F A + + GT +E G F
Sbjct: 76 RDGYANTPTSHLL-RDVEGSFRDMVLFYGEEFHAAWTPACEALLSGT--PGFELAFGEDF 132
Query: 110 WEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQIFEGLG-SLVDVGGGNVSFSRIIS 168
+ ++ + P +RF AM + S + E ++ + G S VDVGGG+ ++ I
Sbjct: 133 YSYLKRCPDAGRRFLLAMKA------SNLAFHEIPRLLDFRGRSFVDVGGGSGELTKAIL 186
Query: 169 EAFPGIKCTVLDLPHA-------VANLPEADNLKYIAGDMLRFIPPAN------------ 209
+A P + +LD + +++L + + + GDML+ +P
Sbjct: 187 QAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLLSRIIGDL 246
Query: 210 --AFLFKILKKRREAIASNGERGKVIIIDIVINAXXXXXXXXXXKFLFDIVMSVNATGKE 267
A ++L REA+A + G+V++I+ I+A L+D+ + + G+
Sbjct: 247 DEAASLRLLGNCREAMAGD---GRVVVIERTISA----SEPSPMSVLWDVHLFMACAGRH 299
Query: 268 RTESEWAKLFFDAVFSHYKITPI 290
RT E L F+ +I +
Sbjct: 300 RTTEEVVDLLGRGGFAVERIVDL 322
>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
pdb|3LST|B Chain B, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
Length = 348
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 98/260 (37%), Gaps = 23/260 (8%)
Query: 33 LVSALDIQPTKTTVNGQEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPFQSLSSW 92
L L + + V + + LT L D P + F D F ++S
Sbjct: 72 LRRVLRLLAVRDVVRESDGRFALTDKGAALRSDSPVPARAGILXFTDTXFWTXSHRVASA 131
Query: 93 FKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQIFEGLGS 152
G E + + G + + + + + E + S + ++ F G+
Sbjct: 132 L-GPERPAFADIFGSSLDAYFDGDAEVEALYYEGXETVSAAEHLILARA---GDFPATGT 187
Query: 153 LVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVA----NLPE-ADNLKYIAGDMLRFIPP 207
+ DVGGG F + PG++ +LD VA + P+ A K + GD LR +P
Sbjct: 188 VADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPH 247
Query: 208 ANAFLFKIL-----KKRREAIASNGER-----GKVIIIDIVINAXXXXXXXXXXKFLFDI 257
A+ + K + + I +N R G+V++ID V+ F
Sbjct: 248 ADVHVLKRILHNWGDEDSVRILTNCRRVXPAHGRVLVIDAVVPEGNDAHQSKEXDF---- 303
Query: 258 VMSVNATGKERTESEWAKLF 277
TG+ERT +E LF
Sbjct: 304 XXLAARTGQERTAAELEPLF 323
>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll
C Biosynthesis
pdb|1X1A|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Methionine
pdb|1X1B|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine
pdb|1X1C|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn2+
pdb|1X1D|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn-Bacteriopheophorbide D
Length = 359
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 25/165 (15%)
Query: 98 LTLWETVHGIKFWEFMNQNPAI----NQRFNEAMASDSEIMTSFVVKSECKQIFEGLGSL 153
+ L + V G K ++ P + N F E S+++ +++ E K +G+ +
Sbjct: 138 MGLSQAVRGQKNFKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLE-EAK--LDGVKKM 194
Query: 154 VDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPE-------ADNLKYIAGDMLR-FI 205
+DVGGG S + + FP + T+L+LP A+ + E AD ++ IA D+ +
Sbjct: 195 IDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESY 254
Query: 206 PPANAFLF-KILKKRREAIAS-------NGER--GKVIIIDIVIN 240
P A+A LF +IL E +++ + R G+++I+D+VI+
Sbjct: 255 PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVID 299
>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam
pdb|4A6E|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam And
N-Acetylserotonin
Length = 353
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 67/151 (44%), Gaps = 20/151 (13%)
Query: 153 LVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVA------NLPEADNLKYIAGDMLRF-I 205
+ D+GGG + ++ +PG K TV D+P V + E + + + GD + +
Sbjct: 183 MCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPL 242
Query: 206 PPANAFLF-KILKKRREAIASN-GER--------GKVIIIDIVINAXXXXXXXXXXKFLF 255
P A+ ++ ++L + S+ ER G +++I+ +++ L+
Sbjct: 243 PEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQ---LY 299
Query: 256 DIVMSVNATGKERTESEWAKLFFDAVFSHYK 286
+ M V G+ERT + + L A F ++
Sbjct: 300 SLNMLVQTEGQERTPTHYHMLLSSAGFRDFQ 330
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 51/109 (46%), Gaps = 10/109 (9%)
Query: 105 HGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQIFEGLGSLVDVGGGNVSFS 164
+G FWE ++ + A+ F+ M+ D ++ ++ ++ + + ++DVGGGN
Sbjct: 141 YGRPFWEDLSADVALADSFDALMSCDEDL--AYEAPADAYD-WSAVRHVLDVGGGNGGML 197
Query: 165 RIISEAFPGIKCTVLDLP-------HAVANLPEADNLKYIAGDMLRFIP 206
I+ P ++ T+++L A+ AD + GD + +P
Sbjct: 198 AAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLP 246
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 21 KLIHGRAITLSELVSALDIQPTKTTVNGQEEAYGLTAASTLLIKDKPYCLSPTVSVFVDP 80
LI G + + +L +A+ P + + T I PY LSPT +D
Sbjct: 232 SLITGPSDKIKQLQNAIGAAPVDGEYAVECANLNVMPDVTFTINGVPYTLSPTAYTLLD- 290
Query: 81 FFVAPFQSLSSWFKGTEL 98
FV Q SS F+G ++
Sbjct: 291 -FVDGMQFCSSGFQGLDI 307
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,146,964
Number of Sequences: 62578
Number of extensions: 305901
Number of successful extensions: 706
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 655
Number of HSP's gapped (non-prelim): 23
length of query: 301
length of database: 14,973,337
effective HSP length: 98
effective length of query: 203
effective length of database: 8,840,693
effective search space: 1794660679
effective search space used: 1794660679
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)