Query 043533
Match_columns 301
No_of_seqs 160 out of 1689
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 05:59:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043533.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043533hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00891 Methyltransf_2: O-met 100.0 5.6E-41 1.2E-45 294.4 14.1 224 48-278 1-241 (241)
2 KOG3178 Hydroxyindole-O-methyl 100.0 2.2E-34 4.8E-39 255.8 15.9 281 13-301 25-342 (342)
3 TIGR02716 C20_methyl_CrtF C-20 100.0 4E-34 8.6E-39 259.4 16.9 257 14-287 10-304 (306)
4 COG2226 UbiE Methylase involve 99.7 4.3E-17 9.4E-22 140.8 13.0 145 148-298 50-234 (238)
5 PF01209 Ubie_methyltran: ubiE 99.7 6.9E-18 1.5E-22 146.7 5.1 157 136-301 37-233 (233)
6 PLN02233 ubiquinone biosynthes 99.7 2E-15 4.3E-20 133.9 15.2 149 147-300 71-260 (261)
7 TIGR02752 MenG_heptapren 2-hep 99.7 8.1E-16 1.8E-20 133.9 12.3 157 136-301 35-231 (231)
8 KOG1540 Ubiquinone biosynthesi 99.6 1E-15 2.2E-20 130.5 11.0 134 147-286 98-278 (296)
9 TIGR00740 methyltransferase, p 99.6 2.3E-16 4.9E-21 138.2 7.4 150 148-300 52-238 (239)
10 PTZ00098 phosphoethanolamine N 99.6 6.9E-15 1.5E-19 130.6 12.7 142 136-291 42-204 (263)
11 PRK15451 tRNA cmo(5)U34 methyl 99.6 1E-14 2.2E-19 128.4 12.4 138 148-288 55-229 (247)
12 PLN02244 tocopherol O-methyltr 99.6 2.5E-14 5.5E-19 131.5 13.0 139 148-290 117-279 (340)
13 PRK00216 ubiE ubiquinone/menaq 99.6 8E-14 1.7E-18 121.5 13.7 157 136-301 41-238 (239)
14 PRK14103 trans-aconitate 2-met 99.5 6.6E-14 1.4E-18 123.8 13.2 146 136-288 19-183 (255)
15 TIGR01934 MenG_MenH_UbiE ubiqu 99.5 7.7E-14 1.7E-18 120.3 12.5 156 137-301 30-223 (223)
16 PLN02490 MPBQ/MSBQ methyltrans 99.5 4.6E-14 9.9E-19 128.7 10.6 128 149-291 113-258 (340)
17 PLN02336 phosphoethanolamine N 99.5 8E-14 1.7E-18 134.0 12.5 138 138-290 258-415 (475)
18 smart00828 PKS_MT Methyltransf 99.5 1.7E-13 3.7E-18 118.7 12.3 124 151-290 1-145 (224)
19 PRK11873 arsM arsenite S-adeno 99.5 1.4E-13 3.1E-18 122.8 11.7 134 147-289 75-230 (272)
20 PRK15068 tRNA mo(5)U34 methylt 99.5 1.9E-13 4.2E-18 124.6 11.7 133 149-290 122-275 (322)
21 PF12847 Methyltransf_18: Meth 99.5 6.6E-14 1.4E-18 107.7 5.4 84 150-236 2-111 (112)
22 TIGR00452 methyltransferase, p 99.5 5.2E-13 1.1E-17 120.8 11.8 134 148-290 120-274 (314)
23 PF13847 Methyltransf_31: Meth 99.5 6.3E-14 1.4E-18 114.2 4.9 125 149-281 3-152 (152)
24 PRK11036 putative S-adenosyl-L 99.4 4.9E-13 1.1E-17 118.2 10.5 142 148-294 43-212 (255)
25 PRK08317 hypothetical protein; 99.4 1.4E-12 3E-17 113.5 12.0 145 138-290 11-177 (241)
26 PRK08287 cobalt-precorrin-6Y C 99.4 1.3E-12 2.8E-17 110.2 10.5 117 141-290 25-157 (187)
27 COG4106 Tam Trans-aconitate me 99.4 3.5E-12 7.5E-17 106.6 12.7 158 135-301 19-203 (257)
28 PLN02396 hexaprenyldihydroxybe 99.4 8.6E-13 1.9E-17 119.8 9.2 137 149-290 131-290 (322)
29 PRK01683 trans-aconitate 2-met 99.4 3.2E-12 6.9E-17 113.1 12.3 142 135-285 20-183 (258)
30 PRK06922 hypothetical protein; 99.4 1.2E-12 2.6E-17 126.6 9.8 153 84-243 353-544 (677)
31 PF02353 CMAS: Mycolic acid cy 99.4 1.2E-12 2.6E-17 116.4 8.7 146 135-291 51-219 (273)
32 PRK05785 hypothetical protein; 99.4 9.2E-12 2E-16 108.1 12.5 144 149-301 51-224 (226)
33 PF13489 Methyltransf_23: Meth 99.3 2.2E-12 4.9E-17 105.3 7.6 124 147-286 20-160 (161)
34 PRK11207 tellurite resistance 99.3 8E-12 1.7E-16 106.3 11.0 129 135-288 19-169 (197)
35 PRK04266 fibrillarin; Provisio 99.3 1.1E-11 2.4E-16 107.3 11.9 132 147-300 70-224 (226)
36 COG2230 Cfa Cyclopropane fatty 99.3 6.6E-12 1.4E-16 110.7 10.6 144 135-291 61-225 (283)
37 PRK10258 biotin biosynthesis p 99.3 1.7E-11 3.7E-16 108.1 12.0 137 135-285 31-183 (251)
38 TIGR02021 BchM-ChlM magnesium 99.3 2.6E-11 5.7E-16 104.7 11.0 168 110-291 17-208 (219)
39 TIGR02072 BioC biotin biosynth 99.3 2.6E-11 5.6E-16 105.5 10.5 125 149-288 34-175 (240)
40 PF08241 Methyltransf_11: Meth 99.2 8.5E-12 1.8E-16 92.4 4.7 77 154-234 1-95 (95)
41 TIGR00537 hemK_rel_arch HemK-r 99.2 1.3E-10 2.8E-15 97.3 11.9 120 148-300 18-176 (179)
42 TIGR00477 tehB tellurite resis 99.2 6.8E-11 1.5E-15 100.4 9.9 129 135-288 19-168 (195)
43 PRK00107 gidB 16S rRNA methylt 99.2 2.5E-11 5.5E-16 102.1 7.0 86 148-236 44-145 (187)
44 PF05175 MTS: Methyltransferas 99.2 3.9E-11 8.5E-16 99.6 6.6 93 138-236 23-140 (170)
45 PRK06202 hypothetical protein; 99.2 1.8E-10 3.8E-15 100.5 10.5 136 148-290 59-223 (232)
46 TIGR02469 CbiT precorrin-6Y C5 99.2 9.1E-11 2E-15 91.5 7.7 92 138-235 11-121 (124)
47 PRK11705 cyclopropane fatty ac 99.2 2.1E-10 4.6E-15 107.0 11.4 140 137-291 158-314 (383)
48 PRK15001 SAM-dependent 23S rib 99.2 6.6E-11 1.4E-15 109.5 7.9 95 136-236 218-340 (378)
49 TIGR00138 gidB 16S rRNA methyl 99.2 5.8E-11 1.3E-15 99.5 6.6 83 150-235 43-141 (181)
50 smart00138 MeTrc Methyltransfe 99.2 3.7E-10 8E-15 100.3 11.7 86 148-236 98-242 (264)
51 PLN02336 phosphoethanolamine N 99.2 2.4E-10 5.2E-15 109.9 11.3 131 135-286 26-179 (475)
52 TIGR03534 RF_mod_PrmC protein- 99.1 2.3E-10 5.1E-15 100.5 9.6 110 149-290 87-242 (251)
53 PRK12335 tellurite resistance 99.1 4.3E-10 9.3E-15 101.2 10.4 128 136-288 110-258 (287)
54 COG2242 CobL Precorrin-6B meth 99.1 2.7E-10 5.9E-15 94.0 7.6 92 141-237 28-136 (187)
55 PF06080 DUF938: Protein of un 99.1 1.8E-09 3.8E-14 91.0 12.1 149 147-301 22-204 (204)
56 PRK00517 prmA ribosomal protei 99.1 1.1E-09 2.4E-14 96.5 11.6 115 148-299 118-248 (250)
57 PF08242 Methyltransf_12: Meth 99.1 1.4E-11 3.1E-16 92.7 -0.4 76 154-232 1-99 (99)
58 PTZ00146 fibrillarin; Provisio 99.1 2.4E-09 5.2E-14 95.2 13.5 132 147-300 130-285 (293)
59 TIGR03438 probable methyltrans 99.1 1E-09 2.2E-14 99.4 11.1 84 148-234 62-175 (301)
60 PRK05134 bifunctional 3-demeth 99.1 8.8E-10 1.9E-14 96.0 10.3 135 148-289 47-205 (233)
61 PRK09328 N5-glutamine S-adenos 99.1 1.9E-09 4.1E-14 96.2 12.4 122 147-300 106-274 (275)
62 PRK11088 rrmA 23S rRNA methylt 99.1 1.8E-10 4E-15 102.8 5.8 85 149-236 85-181 (272)
63 PRK09489 rsmC 16S ribosomal RN 99.1 4.5E-10 9.7E-15 103.2 8.2 94 138-237 188-304 (342)
64 TIGR03587 Pse_Me-ase pseudamin 99.1 6.5E-10 1.4E-14 95.0 8.6 90 147-241 41-147 (204)
65 KOG1270 Methyltransferases [Co 99.1 2.5E-10 5.4E-15 98.4 5.9 131 150-289 90-249 (282)
66 PF08003 Methyltransf_9: Prote 99.1 2.1E-09 4.5E-14 95.2 11.8 141 137-290 106-268 (315)
67 PF13649 Methyltransf_25: Meth 99.0 6.2E-11 1.3E-15 89.6 1.7 75 153-230 1-101 (101)
68 COG2813 RsmC 16S RNA G1207 met 99.0 7E-10 1.5E-14 98.2 8.5 96 136-237 148-267 (300)
69 PLN03075 nicotianamine synthas 99.0 5.4E-10 1.2E-14 99.7 7.5 125 148-301 122-274 (296)
70 PRK04457 spermidine synthase; 99.0 2.9E-10 6.3E-15 100.8 5.8 85 148-235 65-176 (262)
71 PRK07580 Mg-protoporphyrin IX 99.0 2E-09 4.4E-14 93.4 10.8 132 148-291 62-216 (230)
72 PRK13944 protein-L-isoaspartat 99.0 7.9E-10 1.7E-14 94.6 7.9 94 136-235 62-172 (205)
73 PRK00121 trmB tRNA (guanine-N( 99.0 3.3E-10 7.1E-15 96.7 5.5 85 149-236 40-156 (202)
74 PF12147 Methyltransf_20: Puta 99.0 3.5E-09 7.5E-14 92.9 11.7 205 81-300 55-310 (311)
75 PRK13942 protein-L-isoaspartat 99.0 7.7E-10 1.7E-14 95.1 7.6 94 136-235 66-175 (212)
76 TIGR01983 UbiG ubiquinone bios 99.0 1.6E-09 3.4E-14 93.8 9.2 131 149-290 45-204 (224)
77 TIGR03533 L3_gln_methyl protei 99.0 6.2E-10 1.4E-14 99.9 6.8 65 149-213 121-195 (284)
78 PRK14966 unknown domain/N5-glu 99.0 4.8E-09 1E-13 97.6 12.8 67 147-213 249-325 (423)
79 TIGR00080 pimt protein-L-isoas 99.0 8.6E-10 1.9E-14 95.1 7.3 94 136-235 67-176 (215)
80 TIGR00091 tRNA (guanine-N(7)-) 99.0 4.4E-10 9.5E-15 95.3 5.3 85 149-236 16-132 (194)
81 PRK14968 putative methyltransf 99.0 6.7E-09 1.5E-13 87.1 12.3 110 148-290 22-174 (188)
82 PLN02585 magnesium protoporphy 99.0 2.7E-09 5.8E-14 96.8 10.4 137 149-300 144-313 (315)
83 PRK07402 precorrin-6B methylas 99.0 8.9E-10 1.9E-14 93.5 6.9 94 138-237 32-143 (196)
84 TIGR02081 metW methionine bios 99.0 2.7E-09 5.8E-14 90.4 9.5 133 148-291 12-169 (194)
85 COG2227 UbiG 2-polyprenyl-3-me 99.0 4E-10 8.7E-15 96.3 4.1 135 149-290 59-216 (243)
86 COG2890 HemK Methylase of poly 99.0 5.1E-09 1.1E-13 93.6 11.2 62 152-213 113-182 (280)
87 PRK11805 N5-glutamine S-adenos 99.0 9.2E-10 2E-14 99.8 6.1 83 151-237 135-263 (307)
88 KOG4300 Predicted methyltransf 98.9 2.4E-09 5.2E-14 89.1 7.3 137 148-291 75-234 (252)
89 TIGR00536 hemK_fam HemK family 98.9 2.2E-09 4.8E-14 96.4 7.4 63 151-213 116-188 (284)
90 PRK14121 tRNA (guanine-N(7)-)- 98.9 4.3E-09 9.4E-14 97.2 8.9 144 137-288 113-285 (390)
91 COG4123 Predicted O-methyltran 98.9 1.3E-09 2.9E-14 94.5 5.1 87 147-236 42-170 (248)
92 PHA03411 putative methyltransf 98.9 7.3E-09 1.6E-13 91.2 9.1 64 150-213 65-132 (279)
93 PF13659 Methyltransf_26: Meth 98.9 9E-10 1.9E-14 85.2 3.0 82 151-236 2-115 (117)
94 PF03848 TehB: Tellurite resis 98.9 4.1E-09 8.8E-14 88.5 6.5 95 136-238 20-135 (192)
95 PRK14967 putative methyltransf 98.9 1.1E-08 2.3E-13 88.7 8.8 89 147-239 34-162 (223)
96 PRK01544 bifunctional N5-gluta 98.8 3.8E-09 8.3E-14 102.0 6.2 84 150-237 139-269 (506)
97 PF05148 Methyltransf_8: Hypot 98.8 4.5E-08 9.7E-13 82.3 11.1 166 85-300 14-196 (219)
98 KOG2899 Predicted methyltransf 98.8 5.4E-09 1.2E-13 89.0 5.5 142 134-286 44-254 (288)
99 PRK00377 cbiT cobalt-precorrin 98.8 7.4E-09 1.6E-13 88.1 6.4 85 147-234 38-143 (198)
100 KOG2361 Predicted methyltransf 98.8 4.6E-09 9.9E-14 89.5 4.3 132 151-287 73-235 (264)
101 TIGR03840 TMPT_Se_Te thiopurin 98.8 3E-08 6.4E-13 85.3 9.3 118 148-289 33-187 (213)
102 PRK11188 rrmJ 23S rRNA methylt 98.8 2.6E-08 5.6E-13 85.5 8.8 83 147-236 49-165 (209)
103 TIGR00406 prmA ribosomal prote 98.8 1.4E-08 3E-13 91.4 7.3 86 148-237 158-260 (288)
104 COG2264 PrmA Ribosomal protein 98.8 3.5E-08 7.5E-13 87.9 9.7 118 147-296 160-295 (300)
105 PF07021 MetW: Methionine bios 98.8 5.7E-08 1.2E-12 80.8 10.2 132 148-292 12-170 (193)
106 PRK00312 pcm protein-L-isoaspa 98.8 2.5E-08 5.5E-13 85.6 7.8 92 137-236 69-175 (212)
107 TIGR03704 PrmC_rel_meth putati 98.8 1.7E-08 3.7E-13 89.0 6.7 64 150-213 87-159 (251)
108 PF05891 Methyltransf_PK: AdoM 98.7 1.3E-08 2.8E-13 86.2 5.3 125 149-290 55-202 (218)
109 PRK00811 spermidine synthase; 98.7 1.1E-08 2.4E-13 91.8 5.2 84 148-234 75-189 (283)
110 PF05401 NodS: Nodulation prot 98.7 6.9E-09 1.5E-13 86.5 3.4 86 147-237 41-147 (201)
111 PRK01581 speE spermidine synth 98.7 1.5E-08 3.2E-13 92.6 5.7 86 147-235 148-267 (374)
112 PF06325 PrmA: Ribosomal prote 98.7 4.4E-08 9.5E-13 87.9 8.6 114 148-297 160-291 (295)
113 PLN02366 spermidine synthase 98.7 1.7E-08 3.7E-13 91.3 5.9 85 147-234 89-204 (308)
114 PLN02232 ubiquinone biosynthes 98.7 2.5E-08 5.3E-13 82.0 5.4 110 177-291 1-149 (160)
115 PRK13943 protein-L-isoaspartat 98.7 5.2E-08 1.1E-12 88.6 7.6 93 138-236 72-180 (322)
116 KOG1271 Methyltransferases [Ge 98.7 7.3E-08 1.6E-12 78.8 7.2 122 150-291 68-207 (227)
117 PLN02781 Probable caffeoyl-CoA 98.7 8.7E-08 1.9E-12 83.6 8.2 90 147-240 66-181 (234)
118 TIGR00438 rrmJ cell division p 98.7 7.6E-08 1.7E-12 81.1 7.6 82 147-235 30-145 (188)
119 PRK13255 thiopurine S-methyltr 98.6 1E-07 2.2E-12 82.3 7.8 118 148-289 36-190 (218)
120 smart00650 rADc Ribosomal RNA 98.6 7.9E-08 1.7E-12 79.6 6.7 95 136-237 3-113 (169)
121 PF01135 PCMT: Protein-L-isoas 98.6 3.6E-08 7.8E-13 84.3 3.5 95 136-236 62-172 (209)
122 COG2518 Pcm Protein-L-isoaspar 98.6 1.2E-07 2.7E-12 80.0 6.0 94 136-237 62-170 (209)
123 PRK03612 spermidine synthase; 98.6 9.3E-08 2E-12 92.8 6.0 84 148-235 296-414 (521)
124 PRK10901 16S rRNA methyltransf 98.5 1.8E-07 3.8E-12 88.9 7.6 94 141-239 238-375 (427)
125 PHA03412 putative methyltransf 98.5 1.3E-07 2.8E-12 81.6 6.0 76 150-225 50-155 (241)
126 COG4976 Predicted methyltransf 98.5 2.6E-07 5.6E-12 78.3 7.3 152 119-290 94-266 (287)
127 TIGR01177 conserved hypothetic 98.5 2.3E-07 5.1E-12 85.1 7.4 85 147-236 180-294 (329)
128 cd02440 AdoMet_MTases S-adenos 98.5 1.8E-07 4E-12 69.1 5.5 80 152-235 1-103 (107)
129 PF02390 Methyltransf_4: Putat 98.5 1.3E-07 2.8E-12 80.2 5.1 83 151-236 19-133 (195)
130 PRK14902 16S rRNA methyltransf 98.5 2.3E-07 4.9E-12 88.6 7.3 93 141-238 244-381 (444)
131 TIGR00417 speE spermidine synt 98.5 1.4E-07 2.9E-12 84.2 5.3 85 148-235 71-185 (270)
132 KOG3045 Predicted RNA methylas 98.5 1.8E-06 3.9E-11 74.5 11.4 146 110-299 139-301 (325)
133 COG2519 GCD14 tRNA(1-methylade 98.4 6.8E-07 1.5E-11 77.3 7.7 109 126-240 70-199 (256)
134 PRK13168 rumA 23S rRNA m(5)U19 98.4 5.1E-07 1.1E-11 86.2 7.6 126 136-299 287-436 (443)
135 TIGR00563 rsmB ribosomal RNA s 98.4 4.4E-07 9.5E-12 86.2 6.6 96 141-241 232-373 (426)
136 PRK13256 thiopurine S-methyltr 98.4 2.1E-06 4.6E-11 74.1 9.4 88 148-240 42-167 (226)
137 PRK14901 16S rRNA methyltransf 98.4 7.1E-07 1.5E-11 85.0 6.9 94 141-239 246-387 (434)
138 COG0421 SpeE Spermidine syntha 98.4 4.9E-07 1.1E-11 80.6 5.5 86 147-235 74-189 (282)
139 PRK14903 16S rRNA methyltransf 98.4 8E-07 1.7E-11 84.4 7.1 90 147-239 235-369 (431)
140 PRK14904 16S rRNA methyltransf 98.4 8.1E-07 1.8E-11 84.8 7.2 90 147-239 248-380 (445)
141 PRK11727 23S rRNA mA1618 methy 98.3 1.8E-06 3.9E-11 78.4 8.0 133 149-292 114-296 (321)
142 PLN02672 methionine S-methyltr 98.3 1.1E-06 2.4E-11 90.8 7.0 64 150-213 119-209 (1082)
143 KOG1500 Protein arginine N-met 98.3 1.4E-06 3E-11 77.8 6.5 82 147-233 176-279 (517)
144 PRK00274 ksgA 16S ribosomal RN 98.3 1.4E-06 3E-11 77.8 6.5 68 135-207 31-103 (272)
145 PF05724 TPMT: Thiopurine S-me 98.3 1.8E-06 3.8E-11 74.5 6.9 119 147-289 35-190 (218)
146 KOG2904 Predicted methyltransf 98.3 2E-06 4.4E-11 74.8 7.2 78 135-213 134-228 (328)
147 PF01596 Methyltransf_3: O-met 98.3 2.1E-07 4.5E-12 79.4 1.1 90 147-240 43-158 (205)
148 TIGR00446 nop2p NOL1/NOP2/sun 98.3 1.4E-06 3E-11 77.5 6.4 90 147-239 69-202 (264)
149 PLN02823 spermine synthase 98.3 9.6E-07 2.1E-11 80.8 5.5 84 148-234 102-218 (336)
150 PRK00050 16S rRNA m(4)C1402 me 98.3 2.1E-06 4.6E-11 77.0 6.9 76 135-213 8-96 (296)
151 TIGR00755 ksgA dimethyladenosi 98.3 2.1E-06 4.5E-11 75.9 6.7 82 135-221 18-116 (253)
152 KOG3010 Methyltransferase [Gen 98.2 2.1E-06 4.5E-11 73.5 6.2 85 148-236 32-137 (261)
153 PRK14896 ksgA 16S ribosomal RN 98.2 1.3E-06 2.8E-11 77.4 5.1 74 135-213 18-97 (258)
154 PLN02476 O-methyltransferase 98.2 1.3E-06 2.8E-11 77.7 4.7 91 147-241 116-232 (278)
155 COG4122 Predicted O-methyltran 98.2 1.9E-06 4E-11 73.8 5.3 92 147-242 57-171 (219)
156 PRK00536 speE spermidine synth 98.2 2.2E-06 4.8E-11 75.6 5.5 83 147-236 70-170 (262)
157 KOG1541 Predicted protein carb 98.2 1E-06 2.2E-11 74.4 2.9 86 141-234 42-158 (270)
158 PF08704 GCD14: tRNA methyltra 98.2 3.1E-06 6.6E-11 74.1 6.0 113 122-240 12-150 (247)
159 PRK10909 rsmD 16S rRNA m(2)G96 98.2 2.3E-06 5.1E-11 72.7 5.2 86 149-239 53-161 (199)
160 PF05185 PRMT5: PRMT5 arginine 98.2 2E-06 4.4E-11 81.7 5.3 109 109-225 152-289 (448)
161 PF05219 DREV: DREV methyltran 98.1 1.1E-05 2.4E-10 70.2 8.5 130 149-291 94-242 (265)
162 KOG1661 Protein-L-isoaspartate 98.1 3.8E-06 8.3E-11 70.4 5.4 94 138-235 72-192 (237)
163 COG0220 Predicted S-adenosylme 98.1 6.2E-06 1.3E-10 71.3 5.9 133 150-288 49-221 (227)
164 PF04672 Methyltransf_19: S-ad 98.1 1.8E-05 4E-10 69.5 8.7 128 149-286 68-233 (267)
165 PF01564 Spermine_synth: Sperm 98.1 1.9E-06 4.1E-11 75.7 2.5 87 147-236 74-191 (246)
166 TIGR00478 tly hemolysin TlyA f 98.1 1.9E-05 4.1E-10 68.4 8.5 131 149-291 75-219 (228)
167 COG2263 Predicted RNA methylas 98.1 6.5E-06 1.4E-10 68.2 5.2 117 149-288 45-167 (198)
168 PRK15128 23S rRNA m(5)C1962 me 98.1 4.7E-06 1E-10 78.1 4.9 86 147-236 218-339 (396)
169 COG1352 CheR Methylase of chem 98.0 5.4E-05 1.2E-09 67.0 11.1 84 149-235 96-240 (268)
170 PRK11783 rlmL 23S rRNA m(2)G24 98.0 4.3E-06 9.2E-11 84.2 4.6 84 148-235 537-655 (702)
171 COG2521 Predicted archaeal met 98.0 2.3E-05 5E-10 66.9 8.1 119 147-290 132-278 (287)
172 PLN02589 caffeoyl-CoA O-methyl 98.0 6.5E-06 1.4E-10 72.2 5.0 91 147-241 77-194 (247)
173 PF01739 CheR: CheR methyltran 98.0 5.1E-06 1.1E-10 70.4 4.1 84 149-235 31-174 (196)
174 PTZ00338 dimethyladenosine tra 98.0 8.8E-06 1.9E-10 73.3 5.6 74 135-213 25-107 (294)
175 KOG1499 Protein arginine N-met 98.0 6.6E-06 1.4E-10 74.2 4.2 81 149-233 60-164 (346)
176 PRK03522 rumB 23S rRNA methylu 98.0 1.5E-05 3.3E-10 72.7 6.6 63 149-213 173-246 (315)
177 PRK04148 hypothetical protein; 98.0 1.7E-05 3.7E-10 62.6 5.6 92 138-237 8-110 (134)
178 COG3963 Phospholipid N-methylt 97.9 2.6E-05 5.5E-10 63.2 6.1 99 134-238 36-158 (194)
179 PRK10611 chemotaxis methyltran 97.9 3.6E-05 7.9E-10 68.9 7.4 83 150-235 116-261 (287)
180 PF08123 DOT1: Histone methyla 97.9 6.6E-06 1.4E-10 70.1 2.4 100 137-242 33-164 (205)
181 PRK01544 bifunctional N5-gluta 97.8 2.2E-05 4.8E-10 76.1 5.2 85 149-236 347-462 (506)
182 TIGR00479 rumA 23S rRNA (uraci 97.8 1.2E-05 2.6E-10 76.6 3.3 76 147-225 290-388 (431)
183 TIGR02085 meth_trns_rumB 23S r 97.8 1.5E-05 3.2E-10 74.5 3.5 114 149-299 233-368 (374)
184 PF10294 Methyltransf_16: Puta 97.8 1.8E-05 3.8E-10 65.9 3.4 90 147-239 43-159 (173)
185 TIGR00095 RNA methyltransferas 97.8 1.9E-05 4.1E-10 66.6 3.6 86 149-239 49-161 (189)
186 KOG0820 Ribosomal RNA adenine 97.7 4.8E-05 1E-09 66.3 5.5 75 134-213 46-129 (315)
187 PF04816 DUF633: Family of unk 97.7 0.00012 2.5E-09 62.5 7.3 115 153-300 1-138 (205)
188 PF03291 Pox_MCEL: mRNA cappin 97.7 7.3E-05 1.6E-09 68.4 6.0 84 149-236 62-186 (331)
189 KOG2940 Predicted methyltransf 97.6 0.00022 4.7E-09 60.8 7.7 130 148-287 71-225 (325)
190 PF01170 UPF0020: Putative RNA 97.6 5.7E-05 1.2E-09 63.2 4.1 87 136-225 18-143 (179)
191 COG4262 Predicted spermidine s 97.5 0.00017 3.6E-09 65.5 6.0 84 147-234 287-405 (508)
192 PRK04338 N(2),N(2)-dimethylgua 97.5 9.6E-05 2.1E-09 69.1 4.3 83 150-235 58-157 (382)
193 PF02475 Met_10: Met-10+ like- 97.4 8.5E-05 1.8E-09 63.1 2.7 79 147-225 99-194 (200)
194 PF11968 DUF3321: Putative met 97.4 0.00039 8.5E-09 59.0 6.7 106 151-291 53-183 (219)
195 KOG1331 Predicted methyltransf 97.4 0.00031 6.7E-09 61.9 6.1 105 122-235 17-142 (293)
196 COG0293 FtsJ 23S rRNA methylas 97.4 0.00085 1.8E-08 56.8 8.4 62 136-203 34-96 (205)
197 TIGR02143 trmA_only tRNA (urac 97.4 0.0001 2.2E-09 68.3 2.6 50 151-202 199-255 (353)
198 PRK11760 putative 23S rRNA C24 97.4 0.0008 1.7E-08 61.2 8.1 91 148-243 210-311 (357)
199 TIGR00006 S-adenosyl-methyltra 97.3 0.00059 1.3E-08 61.5 7.2 66 135-203 9-80 (305)
200 PF02527 GidB: rRNA small subu 97.3 0.00014 3.1E-09 61.0 2.9 82 152-236 51-148 (184)
201 KOG1975 mRNA cap methyltransfe 97.3 0.00036 7.8E-09 62.4 5.5 82 148-233 116-234 (389)
202 COG0030 KsgA Dimethyladenosine 97.3 0.00053 1.2E-08 60.2 6.4 68 135-207 19-92 (259)
203 PRK05031 tRNA (uracil-5-)-meth 97.3 0.00013 2.8E-09 67.8 2.4 50 151-202 208-264 (362)
204 PF01728 FtsJ: FtsJ-like methy 97.3 9.3E-05 2E-09 61.8 1.2 36 149-184 23-59 (181)
205 COG4076 Predicted RNA methylas 97.3 0.00082 1.8E-08 55.6 6.6 82 151-237 34-136 (252)
206 KOG3420 Predicted RNA methylas 97.2 0.0002 4.3E-09 56.8 2.3 52 150-203 49-107 (185)
207 KOG3115 Methyltransferase-like 97.2 0.00043 9.4E-09 57.9 3.8 86 150-238 61-185 (249)
208 PF00398 RrnaAD: Ribosomal RNA 97.1 0.00058 1.3E-08 60.6 4.7 65 134-203 18-87 (262)
209 PF03141 Methyltransf_29: Puta 97.1 0.00038 8.3E-09 65.9 3.6 87 148-240 116-223 (506)
210 PF03059 NAS: Nicotianamine sy 97.1 0.00042 9.1E-09 61.6 3.6 82 150-234 121-228 (276)
211 KOG3191 Predicted N6-DNA-methy 97.1 0.00087 1.9E-08 55.2 4.7 64 150-213 44-116 (209)
212 PRK11933 yebU rRNA (cytosine-C 97.1 0.0015 3.2E-08 62.7 7.0 87 147-236 111-242 (470)
213 COG4798 Predicted methyltransf 97.0 0.0061 1.3E-07 50.9 9.0 127 147-290 46-206 (238)
214 TIGR01444 fkbM_fam methyltrans 96.9 0.0013 2.8E-08 52.4 4.6 51 152-202 1-58 (143)
215 PF07942 N2227: N2227-like pro 96.9 0.027 5.9E-07 49.9 13.3 123 149-289 56-242 (270)
216 PF11312 DUF3115: Protein of u 96.9 0.013 2.9E-07 52.6 11.1 85 150-237 87-243 (315)
217 COG2384 Predicted SAM-dependen 96.9 0.0083 1.8E-07 51.1 9.2 64 150-213 17-91 (226)
218 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.9 0.00043 9.4E-09 60.9 1.5 123 149-289 56-239 (256)
219 COG0357 GidB Predicted S-adeno 96.8 0.00096 2.1E-08 57.1 3.2 81 150-233 68-165 (215)
220 KOG3987 Uncharacterized conser 96.8 0.00047 1E-08 57.9 1.1 135 149-291 112-262 (288)
221 PF03602 Cons_hypoth95: Conser 96.8 0.00068 1.5E-08 56.9 1.9 88 149-241 42-157 (183)
222 PF13679 Methyltransf_32: Meth 96.8 0.0012 2.7E-08 52.8 3.2 55 148-202 24-92 (141)
223 KOG4589 Cell division protein 96.8 0.0051 1.1E-07 51.0 6.7 38 147-184 67-105 (232)
224 PRK11783 rlmL 23S rRNA m(2)G24 96.7 0.0035 7.5E-08 63.4 7.0 77 135-213 178-309 (702)
225 PF02384 N6_Mtase: N-6 DNA Met 96.7 0.0018 3.8E-08 58.9 4.4 87 147-236 44-183 (311)
226 COG1092 Predicted SAM-dependen 96.7 0.001 2.3E-08 62.0 2.5 86 148-237 216-337 (393)
227 KOG2915 tRNA(1-methyladenosine 96.6 0.0064 1.4E-07 53.3 6.8 114 122-240 77-214 (314)
228 COG0275 Predicted S-adenosylme 96.6 0.0036 7.7E-08 55.8 5.3 64 136-202 13-83 (314)
229 TIGR00308 TRM1 tRNA(guanine-26 96.6 0.003 6.5E-08 58.9 5.1 83 151-236 46-147 (374)
230 PF09243 Rsm22: Mitochondrial 96.5 0.0036 7.8E-08 56.0 4.7 87 150-241 34-144 (274)
231 COG5459 Predicted rRNA methyla 96.5 0.0019 4.1E-08 58.5 2.5 87 150-239 114-228 (484)
232 PF09445 Methyltransf_15: RNA 96.4 0.0015 3.2E-08 53.6 1.2 51 151-203 1-59 (163)
233 KOG1663 O-methyltransferase [S 96.3 0.0075 1.6E-07 51.7 5.2 92 147-242 71-188 (237)
234 PF13578 Methyltransf_24: Meth 96.3 0.00067 1.5E-08 51.3 -1.2 80 154-236 1-105 (106)
235 TIGR03439 methyl_EasF probable 96.2 0.0071 1.5E-07 55.1 5.0 84 148-234 75-195 (319)
236 KOG1709 Guanidinoacetate methy 96.2 0.017 3.6E-07 49.1 6.7 92 147-241 99-211 (271)
237 PF10672 Methyltrans_SAM: S-ad 96.1 0.0023 4.9E-08 57.4 1.1 86 148-237 122-239 (286)
238 COG1889 NOP1 Fibrillarin-like 95.9 0.25 5.4E-06 41.8 12.0 132 147-300 74-228 (231)
239 COG2520 Predicted methyltransf 95.8 0.012 2.6E-07 53.9 4.5 90 148-241 187-294 (341)
240 PF01795 Methyltransf_5: MraW 95.8 0.025 5.3E-07 51.2 6.2 65 135-202 9-79 (310)
241 COG1041 Predicted DNA modifica 95.6 0.05 1.1E-06 49.7 7.4 86 147-237 195-311 (347)
242 COG0116 Predicted N6-adenine-s 95.5 0.033 7.1E-07 51.6 6.3 75 136-213 181-305 (381)
243 KOG0822 Protein kinase inhibit 95.5 0.13 2.9E-06 49.2 10.2 109 109-225 334-470 (649)
244 TIGR00027 mthyl_TIGR00027 meth 95.5 0.18 4E-06 44.6 10.7 132 148-287 80-248 (260)
245 PF01269 Fibrillarin: Fibrilla 95.5 0.087 1.9E-06 45.2 8.2 131 147-300 71-226 (229)
246 COG1189 Predicted rRNA methyla 95.4 0.051 1.1E-06 47.0 6.7 139 138-291 70-226 (245)
247 KOG4058 Uncharacterized conser 95.4 0.013 2.9E-07 46.7 2.9 99 136-241 62-177 (199)
248 PF07091 FmrO: Ribosomal RNA m 95.4 0.036 7.8E-07 48.3 5.7 66 148-213 104-177 (251)
249 COG0500 SmtA SAM-dependent met 95.3 0.087 1.9E-06 40.8 7.4 85 153-241 52-160 (257)
250 COG2265 TrmA SAM-dependent met 95.3 0.016 3.6E-07 55.0 3.6 55 147-203 291-352 (432)
251 KOG1562 Spermidine synthase [A 95.3 0.01 2.2E-07 52.8 1.9 87 147-237 119-237 (337)
252 TIGR02987 met_A_Alw26 type II 95.2 0.027 5.8E-07 55.1 5.0 41 149-189 31-80 (524)
253 PF08100 Dimerisation: Dimeris 95.2 0.0086 1.9E-07 39.0 0.9 29 14-42 6-38 (51)
254 COG3897 Predicted methyltransf 95.0 0.046 1E-06 45.8 4.9 91 147-241 77-184 (218)
255 COG0144 Sun tRNA and rRNA cyto 94.9 0.072 1.6E-06 49.4 6.8 90 147-239 154-291 (355)
256 KOG2730 Methylase [General fun 94.9 0.018 3.9E-07 49.1 2.3 53 149-203 94-154 (263)
257 COG0742 N6-adenine-specific me 94.8 0.036 7.8E-07 46.3 3.8 86 150-240 44-157 (187)
258 PF04989 CmcI: Cephalosporin h 94.6 0.071 1.5E-06 45.3 5.4 89 149-240 32-151 (206)
259 KOG1269 SAM-dependent methyltr 94.6 0.017 3.7E-07 53.6 1.7 88 150-241 111-220 (364)
260 KOG2798 Putative trehalase [Ca 94.5 0.23 5.1E-06 44.7 8.3 126 150-290 151-338 (369)
261 PRK10742 putative methyltransf 94.3 0.086 1.9E-06 46.1 5.3 73 136-213 76-170 (250)
262 KOG2187 tRNA uracil-5-methyltr 94.3 0.038 8.1E-07 52.7 3.3 58 147-206 381-445 (534)
263 KOG2918 Carboxymethyl transfer 94.2 0.57 1.2E-05 42.2 10.3 136 147-290 85-278 (335)
264 PF01189 Nol1_Nop2_Fmu: NOL1/N 94.1 0.024 5.2E-07 50.9 1.6 89 147-238 83-221 (283)
265 PF07757 AdoMet_MTase: Predict 94.1 0.042 9.1E-07 41.5 2.6 32 148-181 57-88 (112)
266 PF12692 Methyltransf_17: S-ad 93.8 0.61 1.3E-05 37.4 8.6 84 150-237 29-134 (160)
267 PF01861 DUF43: Protein of unk 93.4 0.45 9.8E-06 41.4 7.9 76 149-225 44-140 (243)
268 COG1064 AdhP Zn-dependent alco 93.3 0.23 5E-06 45.5 6.4 90 146-239 163-262 (339)
269 PF05958 tRNA_U5-meth_tr: tRNA 92.4 0.074 1.6E-06 49.3 1.9 50 151-202 198-254 (352)
270 PF03141 Methyltransf_29: Puta 92.2 0.16 3.5E-06 48.5 4.0 83 147-237 363-468 (506)
271 KOG3201 Uncharacterized conser 91.2 0.021 4.5E-07 46.4 -2.6 85 150-237 30-141 (201)
272 COG3315 O-Methyltransferase in 90.7 0.41 8.9E-06 43.3 4.9 135 148-288 91-263 (297)
273 COG4742 Predicted transcriptio 90.4 0.25 5.4E-06 43.5 3.0 50 15-64 14-74 (260)
274 KOG1099 SAM-dependent methyltr 90.4 0.56 1.2E-05 40.4 5.0 53 147-203 39-100 (294)
275 PRK01381 Trp operon repressor; 90.4 0.48 1E-05 35.2 4.1 39 7-45 33-73 (99)
276 TIGR01321 TrpR trp operon repr 89.6 0.56 1.2E-05 34.6 3.9 39 7-45 33-73 (94)
277 PF02153 PDH: Prephenate dehyd 88.6 0.7 1.5E-05 40.8 4.6 28 163-190 1-29 (258)
278 PF05971 Methyltransf_10: Prot 88.3 0.57 1.2E-05 42.3 3.8 64 149-213 102-183 (299)
279 PF05711 TylF: Macrocin-O-meth 87.0 1.8 3.8E-05 38.1 6.0 84 150-237 75-212 (248)
280 PF06859 Bin3: Bicoid-interact 86.6 0.1 2.2E-06 39.7 -1.7 68 214-291 25-94 (110)
281 KOG2793 Putative N2,N2-dimethy 85.7 2.2 4.7E-05 37.5 5.8 40 149-189 86-125 (248)
282 KOG3924 Putative protein methy 85.4 0.75 1.6E-05 42.7 3.0 93 147-242 190-314 (419)
283 PF12840 HTH_20: Helix-turn-he 85.3 0.76 1.7E-05 30.8 2.3 31 15-45 11-42 (61)
284 KOG1501 Arginine N-methyltrans 85.2 1.7 3.6E-05 41.1 5.1 76 149-225 66-166 (636)
285 PF01022 HTH_5: Bacterial regu 84.6 0.87 1.9E-05 28.8 2.2 30 15-44 3-32 (47)
286 PF04445 SAM_MT: Putative SAM- 80.1 1.6 3.5E-05 37.9 2.9 73 136-213 63-157 (234)
287 PF01371 Trp_repressor: Trp re 78.8 2.9 6.2E-05 30.5 3.4 37 8-45 28-67 (87)
288 PF11599 AviRa: RRNA methyltra 78.7 1.5 3.1E-05 37.6 2.1 42 148-189 50-94 (246)
289 COG1255 Uncharacterized protei 78.6 12 0.00025 28.9 6.7 82 148-236 12-102 (129)
290 KOG2651 rRNA adenine N-6-methy 78.6 4.1 8.9E-05 37.9 5.1 36 147-183 151-186 (476)
291 COG1063 Tdh Threonine dehydrog 78.0 4.9 0.00011 37.2 5.6 88 151-241 170-274 (350)
292 PF06962 rRNA_methylase: Putat 77.9 1 2.2E-05 35.9 0.9 64 175-241 1-97 (140)
293 PRK01747 mnmC bifunctional tRN 77.1 1.5 3.3E-05 44.2 2.2 83 150-235 58-205 (662)
294 PF05206 TRM13: Methyltransfer 76.0 4.5 9.8E-05 35.8 4.5 35 147-181 16-55 (259)
295 PF04072 LCM: Leucine carboxyl 75.9 7.8 0.00017 32.2 5.8 56 148-203 77-141 (183)
296 KOG2352 Predicted spermine/spe 75.9 9.4 0.0002 36.7 6.8 88 152-243 51-170 (482)
297 PLN02668 indole-3-acetate carb 75.9 2.7 5.9E-05 39.4 3.3 34 149-182 63-111 (386)
298 smart00346 HTH_ICLR helix_turn 75.4 2.4 5.2E-05 30.5 2.3 44 16-59 7-65 (91)
299 PF03721 UDPG_MGDP_dh_N: UDP-g 74.7 1.8 4E-05 36.2 1.7 89 152-245 2-128 (185)
300 KOG1098 Putative SAM-dependent 74.5 9.4 0.0002 37.8 6.5 97 141-242 37-163 (780)
301 smart00550 Zalpha Z-DNA-bindin 74.1 3.3 7.2E-05 28.5 2.6 30 16-45 8-40 (68)
302 PF12324 HTH_15: Helix-turn-he 73.4 4.7 0.0001 28.5 3.2 35 8-45 21-56 (77)
303 TIGR01202 bchC 2-desacetyl-2-h 73.1 18 0.0004 32.4 7.9 80 150-237 145-232 (308)
304 COG2933 Predicted SAM-dependen 72.7 6.4 0.00014 34.9 4.5 77 147-225 209-295 (358)
305 PF05430 Methyltransf_30: S-ad 72.6 22 0.00048 27.7 7.2 75 192-301 49-123 (124)
306 COG0286 HsdM Type I restrictio 72.6 9.4 0.0002 37.1 6.2 68 119-189 153-231 (489)
307 KOG1227 Putative methyltransfe 72.4 1.3 2.8E-05 39.8 0.2 91 150-242 195-303 (351)
308 COG2973 TrpR Trp operon repres 72.3 6.4 0.00014 29.1 3.7 38 7-44 38-77 (103)
309 KOG1269 SAM-dependent methyltr 72.1 34 0.00073 31.9 9.4 54 149-202 180-242 (364)
310 cd08283 FDH_like_1 Glutathione 71.7 19 0.00042 33.4 8.0 44 147-190 182-227 (386)
311 PTZ00357 methyltransferase; Pr 71.3 24 0.00052 35.7 8.5 74 151-224 702-822 (1072)
312 TIGR01470 cysG_Nterm siroheme 70.7 8.1 0.00018 32.8 4.7 73 150-225 9-92 (205)
313 KOG2352 Predicted spermine/spe 70.3 2.4 5.1E-05 40.6 1.5 92 148-243 294-422 (482)
314 PF00107 ADH_zinc_N: Zinc-bind 69.9 3.2 6.9E-05 31.8 2.0 77 159-239 1-92 (130)
315 cd00315 Cyt_C5_DNA_methylase C 69.9 6.8 0.00015 34.9 4.3 59 152-213 2-68 (275)
316 PF14947 HTH_45: Winged helix- 69.8 1.9 4.1E-05 30.5 0.6 44 18-61 10-64 (77)
317 PF10354 DUF2431: Domain of un 69.7 10 0.00023 31.0 5.0 78 156-236 3-125 (166)
318 COG1867 TRM1 N2,N2-dimethylgua 68.4 11 0.00023 35.1 5.2 85 150-237 53-155 (380)
319 PF09339 HTH_IclR: IclR helix- 67.8 3.1 6.7E-05 26.8 1.2 30 16-45 5-36 (52)
320 PF02636 Methyltransf_28: Puta 67.1 5.5 0.00012 34.9 3.1 32 150-181 19-58 (252)
321 PRK05562 precorrin-2 dehydroge 67.1 9.9 0.00021 32.9 4.5 76 149-225 24-108 (223)
322 COG4301 Uncharacterized conser 66.9 8 0.00017 34.0 3.9 85 147-234 76-191 (321)
323 COG1414 IclR Transcriptional r 66.8 4.3 9.4E-05 35.6 2.3 44 16-59 6-64 (246)
324 PRK06719 precorrin-2 dehydroge 66.5 13 0.00029 30.0 5.0 61 150-213 13-76 (157)
325 PF13412 HTH_24: Winged helix- 66.5 5.5 0.00012 25.0 2.2 31 15-45 4-35 (48)
326 COG1565 Uncharacterized conser 66.1 22 0.00047 33.0 6.7 58 116-181 51-117 (370)
327 PF08279 HTH_11: HTH domain; 65.7 6.6 0.00014 25.4 2.5 29 17-45 3-33 (55)
328 PRK07502 cyclohexadienyl dehyd 64.8 8.7 0.00019 34.7 4.0 76 150-225 6-92 (307)
329 cd08237 ribitol-5-phosphate_DH 64.2 38 0.00082 30.9 8.2 85 148-237 162-257 (341)
330 PF02005 TRM: N2,N2-dimethylgu 62.9 5.3 0.00011 37.4 2.2 88 147-237 47-155 (377)
331 KOG0024 Sorbitol dehydrogenase 62.6 33 0.00071 31.5 7.0 91 147-240 167-277 (354)
332 TIGR00122 birA_repr_reg BirA b 62.3 4.2 9.2E-05 27.8 1.1 29 17-45 3-31 (69)
333 PRK09273 hypothetical protein; 62.3 6.9 0.00015 33.4 2.6 51 148-198 61-111 (211)
334 PF02796 HTH_7: Helix-turn-hel 61.1 8.7 0.00019 23.9 2.4 24 18-42 13-36 (45)
335 PF01555 N6_N4_Mtase: DNA meth 60.4 16 0.00035 30.7 4.7 48 135-188 181-229 (231)
336 COG3355 Predicted transcriptio 60.1 10 0.00022 29.6 3.0 38 8-45 14-60 (126)
337 TIGR02431 pcaR_pcaU beta-ketoa 59.7 7.8 0.00017 33.8 2.7 45 16-60 11-68 (248)
338 PF10237 N6-adenineMlase: Prob 59.6 42 0.00092 27.4 6.7 83 148-237 24-124 (162)
339 TIGR01120 rpiB ribose 5-phosph 59.0 9.6 0.00021 30.5 2.8 47 152-198 58-104 (143)
340 PF09929 DUF2161: Uncharacteri 58.9 10 0.00022 29.2 2.7 43 17-60 62-115 (118)
341 PF13404 HTH_AsnC-type: AsnC-t 58.7 10 0.00023 23.3 2.4 28 16-43 5-33 (42)
342 TIGR02822 adh_fam_2 zinc-bindi 58.4 23 0.00049 32.2 5.6 84 147-237 163-255 (329)
343 COG0604 Qor NADPH:quinone redu 57.7 6.9 0.00015 35.8 2.0 90 147-239 140-244 (326)
344 PRK07417 arogenate dehydrogena 57.6 11 0.00023 33.7 3.2 71 152-225 2-83 (279)
345 TIGR00689 rpiB_lacA_lacB sugar 57.3 10 0.00023 30.3 2.7 45 153-197 58-102 (144)
346 KOG2920 Predicted methyltransf 56.8 8.9 0.00019 34.2 2.4 37 149-186 116-153 (282)
347 PRK15090 DNA-binding transcrip 56.7 9.9 0.00022 33.4 2.8 45 16-60 16-74 (257)
348 PF01978 TrmB: Sugar-specific 56.5 6.5 0.00014 26.7 1.3 31 15-45 9-40 (68)
349 PRK05571 ribose-5-phosphate is 56.4 11 0.00024 30.3 2.8 43 156-198 64-106 (148)
350 PRK09424 pntA NAD(P) transhydr 55.4 28 0.00062 34.0 5.9 84 149-237 164-286 (509)
351 PF14314 Methyltrans_Mon: Viru 54.9 22 0.00048 35.8 5.1 60 116-179 293-352 (675)
352 PF07279 DUF1442: Protein of u 54.8 35 0.00076 29.3 5.6 92 149-241 41-153 (218)
353 KOG2198 tRNA cytosine-5-methyl 54.2 23 0.0005 32.9 4.7 35 147-181 153-191 (375)
354 PRK10141 DNA-binding transcrip 53.1 13 0.00028 28.6 2.6 31 15-45 17-48 (117)
355 PF02502 LacAB_rpiB: Ribose/Ga 53.0 9 0.00019 30.6 1.7 44 152-195 58-101 (140)
356 PRK09489 rsmC 16S ribosomal RN 52.7 35 0.00076 31.5 5.8 93 136-237 9-113 (342)
357 KOG1596 Fibrillarin and relate 51.9 40 0.00086 29.6 5.5 96 138-237 145-262 (317)
358 COG1088 RfbB dTDP-D-glucose 4, 51.6 34 0.00074 31.0 5.2 48 156-203 5-62 (340)
359 COG4627 Uncharacterized protei 51.2 19 0.00041 29.4 3.2 26 208-236 48-86 (185)
360 PHA02943 hypothetical protein; 51.1 25 0.00055 28.4 3.9 109 10-132 7-123 (165)
361 PF07381 DUF1495: Winged helix 51.1 15 0.00032 26.9 2.4 31 15-45 10-43 (90)
362 KOG2666 UDP-glucose/GDP-mannos 50.3 14 0.0003 33.7 2.6 30 152-181 3-34 (481)
363 PRK15001 SAM-dependent 23S rib 50.1 20 0.00043 33.6 3.8 79 151-237 46-143 (378)
364 PF08280 HTH_Mga: M protein tr 50.0 4.8 0.0001 26.8 -0.2 31 15-45 6-37 (59)
365 PRK11730 fadB multifunctional 49.9 34 0.00073 35.0 5.7 138 150-293 313-497 (715)
366 COG0698 RpiB Ribose 5-phosphat 49.7 17 0.00036 29.4 2.7 48 151-198 59-106 (151)
367 PF02082 Rrf2: Transcriptional 49.6 5.4 0.00012 28.4 -0.0 34 26-59 24-71 (83)
368 PRK11569 transcriptional repre 49.6 14 0.00031 32.8 2.7 48 13-60 27-89 (274)
369 PF13601 HTH_34: Winged helix 49.1 4.5 9.7E-05 28.9 -0.5 46 15-60 1-66 (80)
370 PF01210 NAD_Gly3P_dh_N: NAD-d 49.1 4.9 0.00011 32.4 -0.4 73 152-225 1-95 (157)
371 COG0686 Ald Alanine dehydrogen 48.8 25 0.00055 32.0 4.0 75 150-225 168-260 (371)
372 PHA01634 hypothetical protein 48.6 34 0.00073 27.0 4.1 39 150-189 29-68 (156)
373 cd08230 glucose_DH Glucose deh 48.0 25 0.00053 32.2 4.1 86 149-239 172-272 (355)
374 TIGR03201 dearomat_had 6-hydro 47.9 1.1E+02 0.0025 27.7 8.5 88 147-238 164-274 (349)
375 TIGR02441 fa_ox_alpha_mit fatt 47.8 48 0.001 34.0 6.4 138 150-293 335-519 (737)
376 COG3510 CmcI Cephalosporin hyd 47.8 1.2E+02 0.0027 25.7 7.6 92 149-243 69-187 (237)
377 PRK12615 galactose-6-phosphate 47.6 19 0.00041 29.7 2.8 45 153-197 60-104 (171)
378 PF03492 Methyltransf_7: SAM d 47.5 17 0.00036 33.5 2.8 71 214-287 164-251 (334)
379 smart00347 HTH_MARR helix_turn 47.3 19 0.0004 25.9 2.6 31 15-45 11-42 (101)
380 PF10771 DUF2582: Protein of u 47.3 17 0.00036 24.9 2.1 27 19-45 13-40 (65)
381 PRK10163 DNA-binding transcrip 47.2 17 0.00036 32.3 2.7 46 15-60 26-86 (271)
382 TIGR01119 lacB galactose-6-pho 47.0 19 0.00041 29.7 2.8 45 154-198 61-105 (171)
383 cd08254 hydroxyacyl_CoA_DH 6-h 47.0 44 0.00096 29.8 5.5 86 147-237 163-264 (338)
384 TIGR03329 Phn_aa_oxid putative 46.9 22 0.00048 34.0 3.7 34 151-184 25-60 (460)
385 PLN02353 probable UDP-glucose 46.6 36 0.00077 33.0 5.0 87 152-243 3-133 (473)
386 cd00092 HTH_CRP helix_turn_hel 46.6 12 0.00026 24.9 1.4 22 24-45 22-43 (67)
387 PF12242 Eno-Rase_NADH_b: NAD( 46.5 51 0.0011 23.4 4.4 35 147-181 36-72 (78)
388 KOG1253 tRNA methyltransferase 46.4 7.9 0.00017 37.2 0.5 87 148-237 108-217 (525)
389 COG4367 Uncharacterized protei 46.0 20 0.00043 26.0 2.3 37 9-45 5-41 (97)
390 PRK09834 DNA-binding transcrip 45.9 17 0.00037 32.1 2.5 49 15-63 12-75 (263)
391 PTZ00215 ribose 5-phosphate is 45.9 20 0.00044 28.9 2.7 45 154-198 65-109 (151)
392 COG0287 TyrA Prephenate dehydr 45.8 15 0.00033 32.9 2.2 74 151-225 4-90 (279)
393 cd05291 HicDH_like L-2-hydroxy 45.5 38 0.00082 30.6 4.8 23 214-236 95-117 (306)
394 PRK07066 3-hydroxybutyryl-CoA 45.3 42 0.00091 30.7 5.0 136 150-293 7-189 (321)
395 PRK10637 cysG siroheme synthas 45.3 26 0.00056 33.7 3.9 73 150-225 12-95 (457)
396 PRK00066 ldh L-lactate dehydro 44.9 32 0.00068 31.4 4.2 87 149-236 5-122 (315)
397 PRK08622 galactose-6-phosphate 44.9 21 0.00045 29.5 2.7 44 155-198 62-105 (171)
398 PF05050 Methyltransf_21: Meth 44.6 32 0.0007 27.1 3.9 30 155-184 1-35 (167)
399 PRK06718 precorrin-2 dehydroge 44.4 42 0.00092 28.3 4.7 73 150-225 10-93 (202)
400 COG1748 LYS9 Saccharopine dehy 44.3 34 0.00075 32.2 4.4 53 151-203 2-58 (389)
401 PRK09260 3-hydroxybutyryl-CoA 44.2 37 0.0008 30.2 4.5 27 267-293 160-186 (288)
402 PRK11524 putative methyltransf 43.9 46 0.00099 29.7 5.0 41 148-190 207-248 (284)
403 KOG2078 tRNA modification enzy 43.7 8.2 0.00018 36.5 0.2 53 147-201 247-308 (495)
404 cd00401 AdoHcyase S-adenosyl-L 43.6 29 0.00063 33.0 3.8 81 149-236 201-289 (413)
405 PRK08507 prephenate dehydrogen 43.4 19 0.00041 31.9 2.4 71 152-225 2-83 (275)
406 PTZ00117 malate dehydrogenase; 42.8 44 0.00095 30.5 4.8 32 150-181 5-37 (319)
407 PF09012 FeoC: FeoC like trans 42.7 4.9 0.00011 27.6 -1.1 28 18-45 4-32 (69)
408 PRK11154 fadJ multifunctional 42.6 57 0.0012 33.3 6.0 138 150-293 309-494 (708)
409 COG4189 Predicted transcriptio 42.5 26 0.00055 30.5 2.9 31 15-45 24-55 (308)
410 TIGR02437 FadB fatty oxidation 42.3 42 0.00091 34.3 5.0 139 149-293 312-497 (714)
411 PRK07819 3-hydroxybutyryl-CoA 42.3 42 0.00091 30.0 4.5 137 151-293 6-191 (286)
412 KOG3851 Sulfide:quinone oxidor 42.2 33 0.00071 31.5 3.7 34 148-181 37-72 (446)
413 PF08220 HTH_DeoR: DeoR-like h 41.8 9.7 0.00021 25.1 0.3 28 18-45 4-32 (57)
414 PF03514 GRAS: GRAS domain fam 41.6 28 0.00061 32.6 3.4 45 135-182 99-150 (374)
415 PF02737 3HCDH_N: 3-hydroxyacy 41.5 16 0.00034 30.3 1.5 71 153-225 2-106 (180)
416 PRK11524 putative methyltransf 41.1 16 0.00035 32.7 1.6 19 214-235 61-79 (284)
417 PRK03902 manganese transport t 40.7 25 0.00053 27.8 2.5 44 19-62 13-69 (142)
418 KOG1122 tRNA and rRNA cytosine 40.4 78 0.0017 30.1 5.9 88 147-237 239-372 (460)
419 TIGR01118 lacA galactose-6-pho 39.6 22 0.00048 28.4 2.0 40 158-197 63-102 (141)
420 PRK11169 leucine-responsive tr 39.3 50 0.0011 26.8 4.2 37 9-45 9-46 (164)
421 PF00440 TetR_N: Bacterial reg 39.2 59 0.0013 20.1 3.6 31 13-43 2-32 (47)
422 PF04218 CENP-B_N: CENP-B N-te 39.1 50 0.0011 21.3 3.4 31 14-45 10-40 (53)
423 PRK13699 putative methylase; P 39.0 18 0.0004 31.2 1.6 19 214-235 53-71 (227)
424 TIGR00675 dcm DNA-methyltransf 39.0 36 0.00078 30.9 3.6 58 153-213 1-65 (315)
425 TIGR03826 YvyF flagellar opero 38.9 25 0.00054 27.9 2.2 36 10-45 26-64 (137)
426 TIGR02337 HpaR homoprotocatech 38.9 35 0.00075 25.8 3.0 50 15-64 29-97 (118)
427 PRK09880 L-idonate 5-dehydroge 38.9 22 0.00047 32.4 2.2 85 149-237 169-267 (343)
428 PF03686 UPF0146: Uncharacteri 38.7 22 0.00047 27.8 1.8 61 148-213 12-76 (127)
429 PF13463 HTH_27: Winged helix 38.6 17 0.00036 24.3 1.1 29 17-45 6-36 (68)
430 PF10017 Methyltransf_33: Hist 38.5 59 0.0013 25.2 4.3 28 265-292 93-120 (127)
431 PF02254 TrkA_N: TrkA-N domain 38.2 33 0.00072 25.5 2.8 45 158-203 4-51 (116)
432 cd05188 MDR Medium chain reduc 38.2 86 0.0019 26.6 5.8 87 148-238 133-234 (271)
433 smart00418 HTH_ARSR helix_turn 38.1 17 0.00037 23.4 1.1 26 20-45 3-28 (66)
434 TIGR01771 L-LDH-NAD L-lactate 37.9 26 0.00057 31.6 2.5 23 214-236 91-113 (299)
435 PRK03659 glutathione-regulated 37.9 47 0.001 33.2 4.5 59 152-213 402-470 (601)
436 PRK08293 3-hydroxybutyryl-CoA 37.8 38 0.00081 30.2 3.5 38 151-188 4-42 (287)
437 PRK12613 galactose-6-phosphate 37.7 25 0.00054 28.1 2.0 41 158-198 62-102 (141)
438 PRK13699 putative methylase; P 37.6 70 0.0015 27.6 5.0 40 148-189 162-202 (227)
439 KOG2782 Putative SAM dependent 37.2 29 0.00063 30.0 2.5 44 135-181 32-75 (303)
440 cd01338 MDH_choloroplast_like 37.0 65 0.0014 29.5 4.9 23 214-236 105-128 (322)
441 TIGR02702 SufR_cyano iron-sulf 36.8 28 0.0006 29.4 2.4 30 16-45 3-33 (203)
442 COG1654 BirA Biotin operon rep 36.7 29 0.00063 24.7 2.0 30 16-45 8-37 (79)
443 PF07789 DUF1627: Protein of u 36.3 21 0.00046 28.6 1.4 21 25-45 4-24 (155)
444 smart00419 HTH_CRP helix_turn_ 36.1 19 0.00042 22.0 1.0 20 26-45 7-26 (48)
445 PF08002 DUF1697: Protein of u 36.0 49 0.0011 26.1 3.5 30 263-292 13-43 (137)
446 TIGR02825 B4_12hDH leukotriene 35.7 86 0.0019 28.1 5.6 87 147-237 136-238 (325)
447 COG1510 Predicted transcriptio 34.4 24 0.00053 29.1 1.5 27 19-45 31-59 (177)
448 PF13936 HTH_38: Helix-turn-he 34.2 42 0.00091 20.7 2.3 23 19-42 13-35 (44)
449 PF01638 HxlR: HxlR-like helix 34.0 14 0.00031 26.7 0.1 47 17-63 8-73 (90)
450 COG1321 TroR Mn-dependent tran 33.9 36 0.00077 27.6 2.4 46 19-64 15-73 (154)
451 PF00165 HTH_AraC: Bacterial r 33.6 10 0.00023 23.0 -0.6 20 26-45 7-26 (42)
452 PRK08621 galactose-6-phosphate 33.5 29 0.00062 27.8 1.8 40 158-197 63-102 (142)
453 cd08294 leukotriene_B4_DH_like 33.3 38 0.00082 30.2 2.8 87 147-237 141-242 (329)
454 PF06792 UPF0261: Uncharacteri 32.9 98 0.0021 29.3 5.4 34 255-291 188-221 (403)
455 PF07109 Mg-por_mtran_C: Magne 32.8 32 0.00068 25.6 1.8 34 268-301 61-97 (97)
456 PF07992 Pyr_redox_2: Pyridine 32.4 50 0.0011 27.0 3.3 29 152-180 1-29 (201)
457 PF10668 Phage_terminase: Phag 32.0 26 0.00057 23.6 1.1 21 25-45 20-40 (60)
458 PF07101 DUF1363: Protein of u 31.8 18 0.00039 26.6 0.4 18 153-170 6-23 (124)
459 PF06690 DUF1188: Protein of u 31.7 97 0.0021 27.1 4.8 60 148-213 40-102 (252)
460 PF10078 DUF2316: Uncharacteri 31.7 43 0.00094 24.4 2.3 39 7-45 3-41 (89)
461 smart00420 HTH_DEOR helix_turn 31.7 24 0.00052 21.9 0.9 27 19-45 5-32 (53)
462 smart00344 HTH_ASNC helix_turn 31.6 25 0.00054 26.1 1.1 30 16-45 5-35 (108)
463 COG1179 Dinucleotide-utilizing 31.5 3.2E+02 0.0069 24.2 7.9 123 150-288 30-153 (263)
464 cd08245 CAD Cinnamyl alcohol d 31.2 71 0.0015 28.5 4.3 87 147-237 160-257 (330)
465 PHA00738 putative HTH transcri 31.0 52 0.0011 24.9 2.7 31 15-45 13-44 (108)
466 PRK04176 ribulose-1,5-biphosph 30.9 74 0.0016 28.0 4.2 31 151-181 26-56 (257)
467 PTZ00326 phenylalanyl-tRNA syn 30.8 31 0.00066 33.5 1.8 55 15-69 7-78 (494)
468 PF06406 StbA: StbA protein; 30.5 78 0.0017 28.7 4.4 63 121-185 246-310 (318)
469 TIGR01772 MDH_euk_gproteo mala 30.5 71 0.0015 29.1 4.1 85 153-237 2-117 (312)
470 cd08255 2-desacetyl-2-hydroxye 30.4 1.1E+02 0.0023 26.5 5.2 86 147-237 95-191 (277)
471 TIGR02133 RPI_actino ribose 5- 30.2 22 0.00048 28.6 0.6 44 155-198 63-106 (148)
472 PF04703 FaeA: FaeA-like prote 29.9 22 0.00048 24.0 0.5 21 25-45 13-33 (62)
473 PRK03562 glutathione-regulated 29.8 66 0.0014 32.3 4.1 51 151-203 401-453 (621)
474 PF13241 NAD_binding_7: Putati 29.5 1E+02 0.0022 22.8 4.1 71 150-225 7-83 (103)
475 COG1062 AdhC Zn-dependent alco 29.3 2.3E+02 0.0051 26.3 7.0 98 137-240 176-289 (366)
476 TIGR03451 mycoS_dep_FDH mycoth 29.3 51 0.0011 30.1 3.0 87 147-237 174-277 (358)
477 cd00090 HTH_ARSR Arsenical Res 29.2 36 0.00079 22.5 1.6 30 16-45 9-38 (78)
478 PRK11179 DNA-binding transcrip 29.2 59 0.0013 26.0 3.0 31 15-45 10-41 (153)
479 TIGR02010 IscR iron-sulfur clu 28.9 48 0.001 25.9 2.4 20 26-45 24-43 (135)
480 PLN00112 malate dehydrogenase 28.9 77 0.0017 30.4 4.2 90 147-237 97-227 (444)
481 PF08484 Methyltransf_14: C-me 28.9 2.1E+02 0.0046 23.2 6.2 84 148-234 66-157 (160)
482 TIGR02531 yecD_yerC TrpR-relat 28.9 73 0.0016 23.2 3.1 30 15-45 39-68 (88)
483 PRK06475 salicylate hydroxylas 28.7 65 0.0014 30.0 3.7 31 151-181 3-33 (400)
484 TIGR02440 FadJ fatty oxidation 28.6 1.1E+02 0.0023 31.3 5.4 138 150-293 304-489 (699)
485 PHA02591 hypothetical protein; 28.6 25 0.00054 24.9 0.6 27 18-44 50-76 (83)
486 PF04539 Sigma70_r3: Sigma-70 28.6 85 0.0019 21.6 3.4 33 12-45 6-38 (78)
487 PRK13239 alkylmercury lyase; P 28.4 38 0.00082 28.9 1.8 31 15-45 23-54 (206)
488 PF09959 DUF2193: Uncharacteri 28.4 1.8E+02 0.0039 27.4 6.1 86 81-169 66-156 (499)
489 cd02190 epsilon_tubulin The tu 28.3 84 0.0018 29.4 4.3 40 136-177 90-134 (379)
490 cd08234 threonine_DH_like L-th 28.2 2E+02 0.0043 25.6 6.7 86 147-237 157-258 (334)
491 PF01358 PARP_regulatory: Poly 28.1 74 0.0016 28.6 3.6 53 149-202 58-114 (294)
492 PHA03108 poly(A) polymerase sm 28.1 1.6E+02 0.0035 26.4 5.6 81 150-243 61-145 (300)
493 PRK07530 3-hydroxybutyryl-CoA 28.1 88 0.0019 27.8 4.3 134 150-292 4-187 (292)
494 PRK09496 trkA potassium transp 28.0 1.7E+02 0.0036 27.7 6.4 50 152-203 2-54 (453)
495 PF04967 HTH_10: HTH DNA bindi 27.8 1.1E+02 0.0024 19.9 3.5 28 15-44 13-40 (53)
496 TIGR03366 HpnZ_proposed putati 27.6 77 0.0017 27.8 3.8 87 149-239 120-221 (280)
497 PF00126 HTH_1: Bacterial regu 27.5 17 0.00038 24.0 -0.3 44 16-60 3-60 (60)
498 COG1959 Predicted transcriptio 27.2 31 0.00067 27.7 1.0 34 26-59 24-71 (150)
499 PF11899 DUF3419: Protein of u 27.2 35 0.00076 32.0 1.5 48 191-241 274-339 (380)
500 PRK06847 hypothetical protein; 27.2 81 0.0018 28.9 4.0 32 150-181 4-35 (375)
No 1
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=100.00 E-value=5.6e-41 Score=294.42 Aligned_cols=224 Identities=31% Similarity=0.598 Sum_probs=194.6
Q ss_pred cCCCeEEcChhcchhhcCCC-CChhhhhhhhcCccchhhHHHHHhhhcCCCCchhHHhhCCChhHHhhcCchHHHHHHHH
Q 043533 48 GQEEAYGLTAASTLLIKDKP-YCLSPTVSVFVDPFFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEA 126 (301)
Q Consensus 48 ~~~~~y~~t~~s~~L~~~~~-~~l~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~a 126 (301)
+++++|+||+.|+.|..+++ .++..++.++.....+++|.+|++++++|+ ++|+.++|.++|+|+.++|+..+.|+++
T Consensus 1 ~~~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~ 79 (241)
T PF00891_consen 1 KEGDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGK-PPFEKAFGTPFFEYLEEDPELAKRFNAA 79 (241)
T ss_dssp SSTEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS--HHHHHHSS-HHHHHHCSHHHHHHHHHH
T ss_pred CCCCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCC-CHHHHhcCCcHHHhhhhChHHHHHHHHH
Confidence 46899999999996665554 678888887656788999999999999998 8899999999999999999999999999
Q ss_pred hhcccccch-HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCC
Q 043533 127 MASDSEIMT-SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLRFI 205 (301)
Q Consensus 127 m~~~~~~~~-~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~ri~~~~~D~~~~~ 205 (301)
|...+.... +.++ +.++ +++.++|||||||+|.++.+++++||+++++++|+|+|++.+++.+||++++||||+++
T Consensus 80 m~~~~~~~~~~~~~-~~~d--~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~ 156 (241)
T PF00891_consen 80 MAEYSRLNAFDILL-EAFD--FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPL 156 (241)
T ss_dssp HHHHHHHHHHHHHH-HHST--TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCC
T ss_pred HHhhhhcchhhhhh-cccc--ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhh
Confidence 999888776 7778 8888 88889999999999999999999999999999999999999988999999999999989
Q ss_pred CcchhHHH-------------HHHHHHHHhcccCCCC--cEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCH
Q 043533 206 PPANAFLF-------------KILKKRREAIASNGER--GKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTE 270 (301)
Q Consensus 206 p~~D~i~~-------------~iL~~~~~aL~p~~~g--g~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~ 270 (301)
|.+|+|++ +||++++++|+| | |+|+|+|.++++....+........+|++|++.++|++||.
T Consensus 157 P~~D~~~l~~vLh~~~d~~~~~iL~~~~~al~p---g~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt~ 233 (241)
T PF00891_consen 157 PVADVYLLRHVLHDWSDEDCVKILRNAAAALKP---GKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERTE 233 (241)
T ss_dssp SSESEEEEESSGGGS-HHHHHHHHHHHHHHSEE---CTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EEH
T ss_pred ccccceeeehhhhhcchHHHHHHHHHHHHHhCC---CCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcCH
Confidence 99999998 999999999999 8 99999999999988775322223579999999888999999
Q ss_pred HHHHHHHH
Q 043533 271 SEWAKLFF 278 (301)
Q Consensus 271 ~e~~~ll~ 278 (301)
+||++||+
T Consensus 234 ~e~~~ll~ 241 (241)
T PF00891_consen 234 EEWEALLK 241 (241)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99999985
No 2
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=100.00 E-value=2.2e-34 Score=255.84 Aligned_cols=281 Identities=23% Similarity=0.322 Sum_probs=238.2
Q ss_pred HHHHHHHhHHhcCCCCCHHHHHHhcCCCCCC------ce----------e----ecCCCeEEcChhcchhhc-CCCCChh
Q 043533 13 FQGQAQLYKLIHGRAITLSELVSALDIQPTK------TT----------V----NGQEEAYGLTAASTLLIK-DKPYCLS 71 (301)
Q Consensus 13 ~~~~l~lF~~L~~~p~t~~elA~~~~~~~~~------l~----------v----e~~~~~y~~t~~s~~L~~-~~~~~l~ 71 (301)
-+++||+||+|++.+- ..|+|-.+-. +.. +. + ......|.++|.++++.+ ++-.++.
T Consensus 25 ~A~eL~v~d~l~~~~~-p~~ia~~l~~-~~~~~~p~ll~r~lr~L~s~~i~k~~~~~~~~Y~~~~~~~~~l~~~~~~S~a 102 (342)
T KOG3178|consen 25 AACELGVFDILANAGS-PSEIASLLPT-PKNPEAPVLLDRILRLLVSYSILKCRLVGGEVYSATPVCKYFLKDSGGGSLA 102 (342)
T ss_pred HHHHcChHHHHHhCCC-HHHHHHhccC-CCCCCChhHHHHHHHHHHHhhhceeeeecceeeeccchhhhheecCCCCchh
Confidence 3579999999987544 8888888874 222 11 1 112228999999996554 4446888
Q ss_pred hhhhhhcCccchhhHHHHHhhhcCCCCchhHHhhCCChhHHhhcCchHHHHHHHHhhcccccchHHHHHhhhhhcccCCC
Q 043533 72 PTVSVFVDPFFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQIFEGLG 151 (301)
Q Consensus 72 ~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~am~~~~~~~~~~~~~~~~~~~~~~~~ 151 (301)
.++...+++..++.|..|.++++.|+ .+|..++|...|+|...++.....|+++|...+......++ +.+. +|++..
T Consensus 103 ~~~~~~~~~v~~~~w~~l~dai~eg~-~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il-~~~~-Gf~~v~ 179 (342)
T KOG3178|consen 103 PLVLLNTSKVIMNTWQFLKDAILEGG-DAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKIL-EVYT-GFKGVN 179 (342)
T ss_pred HHHHHhcccchhhhHHHHHHHHHhcc-cCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhh-hhhc-ccccCc
Confidence 88888878899999999999999998 67999999889999999999999999999999888887788 7776 588899
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCC-CCeEEEeCCCCCCCCcchhHHH-------------HHHH
Q 043533 152 SLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEA-DNLKYIAGDMLRFIPPANAFLF-------------KILK 217 (301)
Q Consensus 152 ~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~-~ri~~~~~D~~~~~p~~D~i~~-------------~iL~ 217 (301)
..||||||.|..+..++.+||+++++.+|+|.+++.++.. +.|+.+.||+|++.|..|+|++ ++|+
T Consensus 180 ~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~daI~mkWiLhdwtDedcvkiLk 259 (342)
T KOG3178|consen 180 VAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDAIWMKWILHDWTDEDCVKILK 259 (342)
T ss_pred eEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccCCCcCeEEEEeecccCChHHHHHHHH
Confidence 9999999999999999999999999999999999999875 8899999999999999999998 9999
Q ss_pred HHHHhcccCCCCcEEEEEeeeeCC-Cccchhhhhhhhhhchhhcccc-CCccCCHHHHHHHHHhCCCceeEEEecCCcee
Q 043533 218 KRREAIASNGERGKVIIIDIVINA-EEEEHELTETKFLFDIVMSVNA-TGKERTESEWAKLFFDAVFSHYKITPIFGMKS 295 (301)
Q Consensus 218 ~~~~aL~p~~~gg~l~i~e~~~~~-~~~~~~~~~~~~~~d~~~~~~~-~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~ 295 (301)
+|+++|+| ||+|+|.|.+.++ ...++.........|+.|+... +|++|+..||..++.++||.+..+...+..++
T Consensus 260 nC~~sL~~---~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~~~~~~~~~~ 336 (342)
T KOG3178|consen 260 NCKKSLPP---GGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCMVALTAYSYS 336 (342)
T ss_pred HHHHhCCC---CCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeEEEeccCccc
Confidence 99999999 9999999998886 3322211122456888888875 59999999999999999999999999999999
Q ss_pred EEEEeC
Q 043533 296 LIEVYP 301 (301)
Q Consensus 296 ~i~a~~ 301 (301)
+||++|
T Consensus 337 ~Ie~~k 342 (342)
T KOG3178|consen 337 VIEFHK 342 (342)
T ss_pred hheeCC
Confidence 999986
No 3
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=100.00 E-value=4e-34 Score=259.45 Aligned_cols=257 Identities=20% Similarity=0.345 Sum_probs=184.6
Q ss_pred HHHHHHhHHhcCCCCCHHHHHHhcCCCCCCce-----------eecCCCeEEcChhcc-hhhcCCCC---Chhhhhhhhc
Q 043533 14 QGQAQLYKLIHGRAITLSELVSALDIQPTKTT-----------VNGQEEAYGLTAAST-LLIKDKPY---CLSPTVSVFV 78 (301)
Q Consensus 14 ~~~l~lF~~L~~~p~t~~elA~~~~~~~~~l~-----------ve~~~~~y~~t~~s~-~L~~~~~~---~l~~~~~~~~ 78 (301)
+++|||||+|.++|.|++|||+++|++++.++ +++++++|+||+.++ +|..+++. ++..+..+..
T Consensus 10 a~~Lglfd~L~~gp~t~~eLA~~~~~~~~~~~~lL~~L~~lgll~~~~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~~ 89 (306)
T TIGR02716 10 AIELDLFSHMAEGPKDLATLAADTGSVPPRLEMLLETLRQMRVINLEDGKWSLTEFADYMFSPTPKEPNLHQTPVAKAMA 89 (306)
T ss_pred HHHcCcHHHHhcCCCCHHHHHHHcCCChHHHHHHHHHHHhCCCeEecCCcEecchhHHhhccCCccchhhhcCchHHHHH
Confidence 57999999999999999999999999999987 156679999999998 55554432 2223333331
Q ss_pred CccchhhHHHHHhhhcCCCCchhHHhhCCChhHHhhcCchHHHHHHHHhh-cccccchHHHHHhhhhhcccCCCeEEEec
Q 043533 79 DPFFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMA-SDSEIMTSFVVKSECKQIFEGLGSLVDVG 157 (301)
Q Consensus 79 ~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~am~-~~~~~~~~~~~~~~~~~~~~~~~~vlDvG 157 (301)
......|.+|.+++|++. +|+..++ +....++.. .|...|. .......+.++ +.++ +++..+|||||
T Consensus 90 -~~~~~~~~~l~~~~r~~~--~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~l~-~~~~--~~~~~~vlDiG 157 (306)
T TIGR02716 90 -FLADDFYMGLSQAVRGQK--NFKGQVP-----YPPVTREDN-LYFEEIHRSNAKFAIQLLL-EEAK--LDGVKKMIDVG 157 (306)
T ss_pred -HHHHHHHHhHHHHhcCCc--ccccccC-----CCCCCHHHH-HhHHHHHHhcchhHHHHHH-HHcC--CCCCCEEEEeC
Confidence 123467999999998543 3432222 111222222 3444444 33334456677 7776 78889999999
Q ss_pred CCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCCcchhHHH-------------HHH
Q 043533 158 GGNVSFSRIISEAFPGIKCTVLDLPHAVANLPE-------ADNLKYIAGDMLR-FIPPANAFLF-------------KIL 216 (301)
Q Consensus 158 gG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~-------~~ri~~~~~D~~~-~~p~~D~i~~-------------~iL 216 (301)
||+|.+++.+++++|+++++++|+|++++.+++ .+||+++.+|+++ ++|.+|+|++ ++|
T Consensus 158 ~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~lh~~~~~~~~~il 237 (306)
T TIGR02716 158 GGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMC 237 (306)
T ss_pred CchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEhhhhcCChHHHHHHH
Confidence 999999999999999999999999999987753 5789999999997 6777898765 699
Q ss_pred HHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhh-hhhchhhccccCCccCCHHHHHHHHHhCCCceeEE
Q 043533 217 KKRREAIASNGERGKVIIIDIVINAEEEEHELTETK-FLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKI 287 (301)
Q Consensus 217 ~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~-~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~ 287 (301)
++++++|+| ||+++|+|.+.++..... +.... ....+.|.... ...++.+||.+||+++||+.+++
T Consensus 238 ~~~~~~L~p---gG~l~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~e~~~ll~~aGf~~v~~ 304 (306)
T TIGR02716 238 KKAFDAMRS---GGRLLILDMVIDDPENPN-FDYLSHYILGAGMPFSV-LGFKEQARYKEILESLGYKDVTM 304 (306)
T ss_pred HHHHHhcCC---CCEEEEEEeccCCCCCch-hhHHHHHHHHccccccc-ccCCCHHHHHHHHHHcCCCeeEe
Confidence 999999999 999999999887654321 11111 11112222111 12345899999999999998875
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.73 E-value=4.3e-17 Score=140.77 Aligned_cols=145 Identities=14% Similarity=0.231 Sum_probs=112.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCCc--chhHHH----
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-FIPP--ANAFLF---- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~~p~--~D~i~~---- 213 (301)
..+.+|||||||||.++..+++..+..+++++|. +.|++.+++ ...|+|+.+|+.+ |+|+ ||+|.+
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh
Confidence 3578999999999999999999999999999999 999999886 1239999999999 9997 999988
Q ss_pred -------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchh-hccc-----------------cCCccC
Q 043533 214 -------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIV-MSVN-----------------ATGKER 268 (301)
Q Consensus 214 -------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~-~~~~-----------------~~g~~r 268 (301)
+.|++++|+|+| ||+++++|+..+...... .....+... .+.. ..-+..
T Consensus 130 rnv~d~~~aL~E~~RVlKp---gG~~~vle~~~p~~~~~~---~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p 203 (238)
T COG2226 130 RNVTDIDKALKEMYRVLKP---GGRLLVLEFSKPDNPVLR---KAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFP 203 (238)
T ss_pred hcCCCHHHHHHHHHHhhcC---CeEEEEEEcCCCCchhhH---HHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCC
Confidence 999999999999 999999999887664321 111111111 1111 111346
Q ss_pred CHHHHHHHHHhCCCceeEEEecC-CceeEEE
Q 043533 269 TESEWAKLFFDAVFSHYKITPIF-GMKSLIE 298 (301)
Q Consensus 269 t~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~ 298 (301)
+.+++.++++++||+.+...... |...+..
T Consensus 204 ~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~ 234 (238)
T COG2226 204 DQEELKQMIEKAGFEEVRYENLTFGIVALHR 234 (238)
T ss_pred CHHHHHHHHHhcCceEEeeEeeeeeeEEEEE
Confidence 88999999999999999976664 3334433
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.71 E-value=6.9e-18 Score=146.72 Aligned_cols=157 Identities=14% Similarity=0.202 Sum_probs=78.6
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-FIP 206 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~~p 206 (301)
..++ +... ...+.+|||||||||.++..++++. |+.+++++|+ ++|++.|++ ..+|+++.+|+.+ |+|
T Consensus 37 ~~~~-~~~~--~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~ 113 (233)
T PF01209_consen 37 RKLI-KLLG--LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFP 113 (233)
T ss_dssp SHHH-HHHT----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-
T ss_pred HHHH-hccC--CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCC
Confidence 3455 5444 5667899999999999999999874 6789999999 999999875 3589999999988 888
Q ss_pred c--chhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccc-----cC----
Q 043533 207 P--ANAFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN-----AT---- 264 (301)
Q Consensus 207 ~--~D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~-----~~---- 264 (301)
+ ||+|++ +.|++++++||| ||+++|+|...|....-. ....++-...+.. .+
T Consensus 114 d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkP---GG~l~ile~~~p~~~~~~---~~~~~y~~~ilP~~g~l~~~~~~~ 187 (233)
T PF01209_consen 114 DNSFDAVTCSFGLRNFPDRERALREMYRVLKP---GGRLVILEFSKPRNPLLR---ALYKFYFKYILPLIGRLLSGDREA 187 (233)
T ss_dssp TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEE---EEEEEEEEEEB-SSHHHH---HHHHH-------------------
T ss_pred CCceeEEEHHhhHHhhCCHHHHHHHHHHHcCC---CeEEEEeeccCCCCchhh---ceeeeeeccccccccccccccccc
Confidence 6 999987 999999999999 999999999887753211 1110000000000 00
Q ss_pred --------CccCCHHHHHHHHHhCCCceeEEEecC-CceeEEEEeC
Q 043533 265 --------GKERTESEWAKLFFDAVFSHYKITPIF-GMKSLIEVYP 301 (301)
Q Consensus 265 --------g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~a~~ 301 (301)
....+.+|+.++++++||+.++.++.. |.-.+..++|
T Consensus 188 Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 188 YRYLPESIRRFPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK 233 (233)
T ss_dssp ----------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 123478999999999999999987764 4455555543
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.66 E-value=2e-15 Score=133.88 Aligned_cols=149 Identities=19% Similarity=0.219 Sum_probs=110.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC---------CCCeEEEeCCCCC-CCCc--chhHH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDL-PHAVANLPE---------ADNLKYIAGDMLR-FIPP--ANAFL 212 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~---------~~ri~~~~~D~~~-~~p~--~D~i~ 212 (301)
..+..+|||||||+|.++..+++.+ |+.+++++|+ ++|++.|++ .++++++.+|+.+ |+++ ||+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 4567899999999999999999875 6789999999 899988753 2479999999987 7775 99887
Q ss_pred H-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhh--ccc-cC------------Cc
Q 043533 213 F-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVM--SVN-AT------------GK 266 (301)
Q Consensus 213 ~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~--~~~-~~------------g~ 266 (301)
+ ++|++++++|+| ||+++++|...+.....+.+. ...+...+ +.. .+ ..
T Consensus 151 ~~~~l~~~~d~~~~l~ei~rvLkp---GG~l~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~ 225 (261)
T PLN02233 151 MGYGLRNVVDRLKAMQEMYRVLKP---GSRVSILDFNKSTQPFTTSMQ--EWMIDNVVVPVATGYGLAKEYEYLKSSINE 225 (261)
T ss_pred EecccccCCCHHHHHHHHHHHcCc---CcEEEEEECCCCCcHHHHHHH--HHHHhhhhhHHHHHhCChHHHHHHHHHHHh
Confidence 6 899999999999 999999998765543221110 00111000 000 00 23
Q ss_pred cCCHHHHHHHHHhCCCceeEEEecC-CceeEEEEe
Q 043533 267 ERTESEWAKLFFDAVFSHYKITPIF-GMKSLIEVY 300 (301)
Q Consensus 267 ~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~a~ 300 (301)
.++.+|+.++++++||+.++..... +...+..|+
T Consensus 226 f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~ 260 (261)
T PLN02233 226 YLTGEELEKLALEAGFSSAKHYEISGGLMGNLVAT 260 (261)
T ss_pred cCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEe
Confidence 5699999999999999999988774 455666654
No 7
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.66 E-value=8.1e-16 Score=133.87 Aligned_cols=157 Identities=16% Similarity=0.230 Sum_probs=115.2
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-FIP 206 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~~p 206 (301)
..++ ..++ .....+|||+|||+|.++..+++.. |+.+++++|+ +++++.+++ .++++++.+|+.+ +++
T Consensus 35 ~~~l-~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 111 (231)
T TIGR02752 35 KDTM-KRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFD 111 (231)
T ss_pred HHHH-HhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCC
Confidence 4455 5555 6667899999999999999999885 6789999999 888877663 3589999999977 666
Q ss_pred c--chhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhh-hhhchh--------------
Q 043533 207 P--ANAFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETK-FLFDIV-------------- 258 (301)
Q Consensus 207 ~--~D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~-~~~d~~-------------- 258 (301)
. +|+|++ ++|+++++.|+| ||.+++.+...+.... +.... ..+...
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~---gG~l~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~ 185 (231)
T TIGR02752 112 DNSFDYVTIGFGLRNVPDYMQVLREMYRVVKP---GGKVVCLETSQPTIPG---FKQLYFFYFKYIMPLFGKLFAKSYKE 185 (231)
T ss_pred CCCccEEEEecccccCCCHHHHHHHHHHHcCc---CeEEEEEECCCCCChH---HHHHHHHHHcChhHHhhHHhcCCHHH
Confidence 4 898876 899999999999 9999988865443221 11100 001000
Q ss_pred --hccccCCccCCHHHHHHHHHhCCCceeEEEecC-CceeEEEEeC
Q 043533 259 --MSVNATGKERTESEWAKLFFDAVFSHYKITPIF-GMKSLIEVYP 301 (301)
Q Consensus 259 --~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~a~~ 301 (301)
.+........+.++++++|+++||+++++.... |...++.++|
T Consensus 186 ~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 186 YSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 000011134688999999999999999998875 7788888876
No 8
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.65 E-value=1e-15 Score=130.53 Aligned_cols=134 Identities=22% Similarity=0.302 Sum_probs=103.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCC------CeEEEeec-hHHHhcCCC---------CCCeEEEeCCCCC-CCCc--
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPG------IKCTVLDL-PHAVANLPE---------ADNLKYIAGDMLR-FIPP-- 207 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~------~~~~~~Dl-p~~~~~a~~---------~~ri~~~~~D~~~-~~p~-- 207 (301)
.....++|||+||||.++..++++-+. .+++++|+ |+|++.+++ ..++.|+.+|+.+ |+|+
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s 177 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDS 177 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCc
Confidence 344579999999999999999999877 78999999 999987764 4569999999998 9997
Q ss_pred chhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhh--hhhchh---------------h
Q 043533 208 ANAFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETK--FLFDIV---------------M 259 (301)
Q Consensus 208 ~D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~--~~~d~~---------------~ 259 (301)
+|.|++ +.|++++++||| ||++.++|+---++.. +..+. ..++.. +
T Consensus 178 ~D~yTiafGIRN~th~~k~l~EAYRVLKp---GGrf~cLeFskv~~~~---l~~fy~~ysf~VlpvlG~~iagd~~sYqY 251 (296)
T KOG1540|consen 178 FDAYTIAFGIRNVTHIQKALREAYRVLKP---GGRFSCLEFSKVENEP---LKWFYDQYSFDVLPVLGEIIAGDRKSYQY 251 (296)
T ss_pred ceeEEEecceecCCCHHHHHHHHHHhcCC---CcEEEEEEccccccHH---HHHHHHhhhhhhhchhhHhhhhhHhhhhh
Confidence 999998 999999999999 9999999974433211 11111 122221 1
Q ss_pred ccccCCccCCHHHHHHHHHhCCCceeE
Q 043533 260 SVNATGKERTESEWAKLFFDAVFSHYK 286 (301)
Q Consensus 260 ~~~~~g~~rt~~e~~~ll~~aGf~~~~ 286 (301)
|+..=-+.++.+|++.+.++|||..+.
T Consensus 252 LveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 252 LVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 111112456899999999999999997
No 9
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.65 E-value=2.3e-16 Score=138.22 Aligned_cols=150 Identities=12% Similarity=0.115 Sum_probs=106.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHH--CCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCcchhHHH---
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEA--FPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FIPPANAFLF--- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~--~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~p~~D~i~~--- 213 (301)
....+|||||||+|.++..++++ +|+.+++++|+ +++++.|++ ..+++++.+|+.+ +++.+|++++
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 45679999999999999999987 48899999999 999988864 3579999999987 6666786654
Q ss_pred ----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhh-hhhh-hh-----h---chhh--cc-ccCCccCCH
Q 043533 214 ----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHEL-TETK-FL-----F---DIVM--SV-NATGKERTE 270 (301)
Q Consensus 214 ----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~-~~~~-~~-----~---d~~~--~~-~~~g~~rt~ 270 (301)
.+|++++++|+| ||.+++.|.+.+++....+. .... .+ + .+.. .. ...-...|.
T Consensus 132 l~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~ 208 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNP---NGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSI 208 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCC---CeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCH
Confidence 789999999999 99999999877654332111 0000 00 0 0000 00 011235799
Q ss_pred HHHHHHHHhCCCceeEEEecCCceeEEEEe
Q 043533 271 SEWAKLFFDAVFSHYKITPIFGMKSLIEVY 300 (301)
Q Consensus 271 ~e~~~ll~~aGf~~~~~~~~~~~~~~i~a~ 300 (301)
+++.++++++||+.+++........++.++
T Consensus 209 ~~~~~~l~~aGF~~~~~~~~~~~~~~~~~~ 238 (239)
T TIGR00740 209 ETHKARLKNVGFSHVELWFQCFNFGSLVAV 238 (239)
T ss_pred HHHHHHHHHcCCchHHHHHHHHhHhHHhee
Confidence 999999999999987654433334444443
No 10
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.61 E-value=6.9e-15 Score=130.56 Aligned_cols=142 Identities=17% Similarity=0.220 Sum_probs=107.0
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCc--
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----ADNLKYIAGDMLR-FIPP-- 207 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----~~ri~~~~~D~~~-~~p~-- 207 (301)
..++ +.+. +.+..+|||||||+|..+..+++.+ +.+++++|+ +.+++.+++ .++|+++.+|+.+ ++|+
T Consensus 42 ~~~l-~~l~--l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~ 117 (263)
T PTZ00098 42 TKIL-SDIE--LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENT 117 (263)
T ss_pred HHHH-HhCC--CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCC
Confidence 4466 6665 6778899999999999999998876 679999999 888777664 4689999999987 7764
Q ss_pred chhHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHH
Q 043533 208 ANAFLF-------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWA 274 (301)
Q Consensus 208 ~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~ 274 (301)
||+|++ ++|++++++|+| ||++++.+.......... . .... ++........+.++|.
T Consensus 118 FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkP---GG~lvi~d~~~~~~~~~~---~--~~~~--~~~~~~~~~~~~~~~~ 187 (263)
T PTZ00098 118 FDMIYSRDAILHLSYADKKKLFEKCYKWLKP---NGILLITDYCADKIENWD---E--EFKA--YIKKRKYTLIPIQEYG 187 (263)
T ss_pred eEEEEEhhhHHhCCHHHHHHHHHHHHHHcCC---CcEEEEEEeccccccCcH---H--HHHH--HHHhcCCCCCCHHHHH
Confidence 898775 789999999999 999999988655432111 1 0110 0111112346899999
Q ss_pred HHHHhCCCceeEEEecC
Q 043533 275 KLFFDAVFSHYKITPIF 291 (301)
Q Consensus 275 ~ll~~aGf~~~~~~~~~ 291 (301)
++|+++||++++.....
T Consensus 188 ~~l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 188 DLIKSCNFQNVVAKDIS 204 (263)
T ss_pred HHHHHCCCCeeeEEeCc
Confidence 99999999999987753
No 11
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.60 E-value=1e-14 Score=128.42 Aligned_cols=138 Identities=13% Similarity=0.112 Sum_probs=100.1
Q ss_pred cCCCeEEEecCCccHHHHHHHH--HCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCcchhHHH---
Q 043533 148 EGLGSLVDVGGGNVSFSRIISE--AFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FIPPANAFLF--- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~--~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~p~~D~i~~--- 213 (301)
.+..+|||||||+|..+..+++ .+|+.+++++|. +++++.+++ ..+|+++.+|+.+ +.+.+|+|++
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 4568999999999999999988 468999999999 999998864 3489999999987 6666887765
Q ss_pred ----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchh-hhhhh-h---hhchh-----hcc-ccC--CccCCH
Q 043533 214 ----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHE-LTETK-F---LFDIV-----MSV-NAT--GKERTE 270 (301)
Q Consensus 214 ----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~-~~~~~-~---~~d~~-----~~~-~~~--g~~rt~ 270 (301)
.++++++++|+| ||.+++.|.+...+....+ +.... . ...+. -.. ... -...|.
T Consensus 135 l~~l~~~~~~~~l~~i~~~Lkp---GG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~ 211 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNP---GGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSV 211 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCC---CCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCH
Confidence 789999999999 9999999976655433211 10000 0 00100 000 001 123589
Q ss_pred HHHHHHHHhCCCceeEEE
Q 043533 271 SEWAKLFFDAVFSHYKIT 288 (301)
Q Consensus 271 ~e~~~ll~~aGf~~~~~~ 288 (301)
++..+||++|||+.+...
T Consensus 212 ~~~~~~L~~aGF~~v~~~ 229 (247)
T PRK15451 212 ETHKARLHKAGFEHSELW 229 (247)
T ss_pred HHHHHHHHHcCchhHHHH
Confidence 999999999999987643
No 12
>PLN02244 tocopherol O-methyltransferase
Probab=99.57 E-value=2.5e-14 Score=131.52 Aligned_cols=139 Identities=19% Similarity=0.226 Sum_probs=100.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCc--chhHHH---
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FIPP--ANAFLF--- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~p~--~D~i~~--- 213 (301)
....+|||||||+|.++..+++++ +.+++++|+ +.+++.+++ .++|+|+.+|+.+ ++++ ||+|++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 456799999999999999999988 789999999 788776653 3689999999987 7764 999886
Q ss_pred --------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccch-hhhh-hhhhhchhhccccCCccCCHHHHHHHHHhCCCc
Q 043533 214 --------KILKKRREAIASNGERGKVIIIDIVINAEEEEH-ELTE-TKFLFDIVMSVNATGKERTESEWAKLFFDAVFS 283 (301)
Q Consensus 214 --------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~-~~~~-~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~ 283 (301)
++|++++++|+| ||+++|.+.......... .+.. ....++.......-....+.++|.++++++||+
T Consensus 196 ~~h~~d~~~~l~e~~rvLkp---GG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~ 272 (340)
T PLN02244 196 GEHMPDKRKFVQELARVAAP---GGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQ 272 (340)
T ss_pred hhccCCHHHHHHHHHHHcCC---CcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCC
Confidence 899999999999 999999886433211110 0000 001111110000111234899999999999999
Q ss_pred eeEEEec
Q 043533 284 HYKITPI 290 (301)
Q Consensus 284 ~~~~~~~ 290 (301)
++++..+
T Consensus 273 ~v~~~d~ 279 (340)
T PLN02244 273 DIKTEDW 279 (340)
T ss_pred eeEeeeC
Confidence 9988765
No 13
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.55 E-value=8e-14 Score=121.46 Aligned_cols=157 Identities=15% Similarity=0.169 Sum_probs=113.3
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CC
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FI 205 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~ 205 (301)
..++ ..+. ..+..+|||||||+|.++..+++.+| +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.
T Consensus 41 ~~~~-~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 117 (239)
T PRK00216 41 RKTI-KWLG--VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF 117 (239)
T ss_pred HHHH-HHhC--CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC
Confidence 3345 4444 34567999999999999999999998 789999999 777776654 3579999999987 44
Q ss_pred C-c-chhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhcc-----ccC---
Q 043533 206 P-P-ANAFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSV-----NAT--- 264 (301)
Q Consensus 206 p-~-~D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~--- 264 (301)
+ . +|+|++ .+|+++.+.|+| ||.+++++...+...... .....+...++. ..+
T Consensus 118 ~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~---gG~li~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 191 (239)
T PRK00216 118 PDNSFDAVTIAFGLRNVPDIDKALREMYRVLKP---GGRLVILEFSKPTNPPLK---KAYDFYLFKVLPLIGKLISKNAE 191 (239)
T ss_pred CCCCccEEEEecccccCCCHHHHHHHHHHhccC---CcEEEEEEecCCCchHHH---HHHHHHHHhhhHHHHHHHcCCcH
Confidence 4 3 898875 899999999999 899999988665432110 000000000000 000
Q ss_pred ---------CccCCHHHHHHHHHhCCCceeEEEec-CCceeEEEEeC
Q 043533 265 ---------GKERTESEWAKLFFDAVFSHYKITPI-FGMKSLIEVYP 301 (301)
Q Consensus 265 ---------g~~rt~~e~~~ll~~aGf~~~~~~~~-~~~~~~i~a~~ 301 (301)
...++.++|.++|+++||+.+.+... .+...++.|++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 192 AYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 12457899999999999999999886 46788988875
No 14
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.55 E-value=6.6e-14 Score=123.81 Aligned_cols=146 Identities=16% Similarity=0.178 Sum_probs=101.1
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCC--cchhHH
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLRFIP--PANAFL 212 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~~~p--~~D~i~ 212 (301)
..++ +.++ .....+|||||||+|.++..+++++|+.+++++|+ +.+++.+++ .+++++.+|+.+..+ .||+|+
T Consensus 19 ~~ll-~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~~~~~fD~v~ 94 (255)
T PRK14103 19 YDLL-ARVG--AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-RGVDARTGDVRDWKPKPDTDVVV 94 (255)
T ss_pred HHHH-HhCC--CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-cCCcEEEcChhhCCCCCCceEEE
Confidence 4567 6666 56678999999999999999999999999999999 899998874 478999999865223 399888
Q ss_pred H-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhh--hhhchhh--ccc-cCCccCCHHHHHHH
Q 043533 213 F-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETK--FLFDIVM--SVN-ATGKERTESEWAKL 276 (301)
Q Consensus 213 ~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~--~~~d~~~--~~~-~~g~~rt~~e~~~l 276 (301)
+ ++|++++++|+| ||++++.................. ..+.-.+ ... ......+.++|.++
T Consensus 95 ~~~~l~~~~d~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 171 (255)
T PRK14103 95 SNAALQWVPEHADLLVRWVDELAP---GSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAEL 171 (255)
T ss_pred EehhhhhCCCHHHHHHHHHHhCCC---CcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHH
Confidence 7 899999999999 898887532111111000000000 0011000 001 12235689999999
Q ss_pred HHhCCCceeEEE
Q 043533 277 FFDAVFSHYKIT 288 (301)
Q Consensus 277 l~~aGf~~~~~~ 288 (301)
|+++||++..+.
T Consensus 172 l~~aGf~v~~~~ 183 (255)
T PRK14103 172 LTDAGCKVDAWE 183 (255)
T ss_pred HHhCCCeEEEEe
Confidence 999999865433
No 15
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.54 E-value=7.7e-14 Score=120.27 Aligned_cols=156 Identities=14% Similarity=0.120 Sum_probs=112.5
Q ss_pred HHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCc--
Q 043533 137 FVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPG-IKCTVLDL-PHAVANLPE----ADNLKYIAGDMLR-FIPP-- 207 (301)
Q Consensus 137 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~-~~~~~~Dl-p~~~~~a~~----~~ri~~~~~D~~~-~~p~-- 207 (301)
.++ +.+. .....+|||+|||+|.++..+++.+|. .+++++|+ +.+++.+++ .+++.++.+|+.+ +++.
T Consensus 30 ~~~-~~~~--~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 106 (223)
T TIGR01934 30 RAV-KLIG--VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNS 106 (223)
T ss_pred HHH-HHhc--cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCc
Confidence 344 4444 345789999999999999999999987 79999999 777776654 3679999999987 5543
Q ss_pred chhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccC------------
Q 043533 208 ANAFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNAT------------ 264 (301)
Q Consensus 208 ~D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~------------ 264 (301)
+|+|++ .+|+++++.|+| ||++++.+...+.... +......+...++....
T Consensus 107 ~D~i~~~~~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (223)
T TIGR01934 107 FDAVTIAFGLRNVTDIQKALREMYRVLKP---GGRLVILEFSKPANAL---LKKFYKFYLKNVLPSIGGLISKNAEAYTY 180 (223)
T ss_pred EEEEEEeeeeCCcccHHHHHHHHHHHcCC---CcEEEEEEecCCCchh---hHHHHHHHHHHhhhhhhhhhcCCchhhHH
Confidence 898865 899999999999 9999998876544321 10000111111111000
Q ss_pred -----CccCCHHHHHHHHHhCCCceeEEEecCC-ceeEEEEeC
Q 043533 265 -----GKERTESEWAKLFFDAVFSHYKITPIFG-MKSLIEVYP 301 (301)
Q Consensus 265 -----g~~rt~~e~~~ll~~aGf~~~~~~~~~~-~~~~i~a~~ 301 (301)
....+..+|.++|+++||+.+.+.+..+ ...++++++
T Consensus 181 ~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 181 LPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 1235789999999999999999998865 467787775
No 16
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.53 E-value=4.6e-14 Score=128.65 Aligned_cols=128 Identities=27% Similarity=0.301 Sum_probs=100.6
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCCc--chhHHH--------
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE---ADNLKYIAGDMLR-FIPP--ANAFLF-------- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~---~~ri~~~~~D~~~-~~p~--~D~i~~-------- 213 (301)
...+|||||||+|.++..+++..|..+++++|. +++++.+++ ..+++++.+|+.+ +++. ||+|++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 457999999999999999999998889999999 888887765 4679999999987 6654 998876
Q ss_pred ---HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEec
Q 043533 214 ---KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 214 ---~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 290 (301)
++|++++++|+| ||++++++...++.... ....+..+ ..++.+|+.++|+++||+.+++..+
T Consensus 193 d~~~~L~e~~rvLkP---GG~LvIi~~~~p~~~~~------r~~~~~~~------~~~t~eEl~~lL~~aGF~~V~i~~i 257 (340)
T PLN02490 193 DPQRGIKEAYRVLKI---GGKACLIGPVHPTFWLS------RFFADVWM------LFPKEEEYIEWFTKAGFKDVKLKRI 257 (340)
T ss_pred CHHHHHHHHHHhcCC---CcEEEEEEecCcchhHH------HHhhhhhc------cCCCHHHHHHHHHHCCCeEEEEEEc
Confidence 899999999999 99998887654321110 11112221 1358999999999999999998876
Q ss_pred C
Q 043533 291 F 291 (301)
Q Consensus 291 ~ 291 (301)
.
T Consensus 258 ~ 258 (340)
T PLN02490 258 G 258 (340)
T ss_pred C
Confidence 4
No 17
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.52 E-value=8e-14 Score=133.96 Aligned_cols=138 Identities=15% Similarity=0.151 Sum_probs=105.8
Q ss_pred HHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCCc--c
Q 043533 138 VVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR-FIPP--A 208 (301)
Q Consensus 138 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~-~~p~--~ 208 (301)
++ +.+. +.+..+|||||||+|..+..+++.+ +.+++++|+ +++++.|++ ..+++|+.+|+++ ++|. |
T Consensus 258 l~-~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~f 333 (475)
T PLN02336 258 FV-DKLD--LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSF 333 (475)
T ss_pred HH-HhcC--CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCE
Confidence 45 5454 5567799999999999999999876 789999999 788887753 4589999999987 6664 9
Q ss_pred hhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHH
Q 043533 209 NAFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLF 277 (301)
Q Consensus 209 D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll 277 (301)
|+|++ ++|++++++|+| ||++++.+.........+ ..... +...+...++..+|.+++
T Consensus 334 D~I~s~~~l~h~~d~~~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~~---~~~~~-----~~~~g~~~~~~~~~~~~l 402 (475)
T PLN02336 334 DVIYSRDTILHIQDKPALFRSFFKWLKP---GGKVLISDYCRSPGTPSP---EFAEY-----IKQRGYDLHDVQAYGQML 402 (475)
T ss_pred EEEEECCcccccCCHHHHHHHHHHHcCC---CeEEEEEEeccCCCCCcH---HHHHH-----HHhcCCCCCCHHHHHHHH
Confidence 99887 899999999999 999999887654432221 11111 111234567899999999
Q ss_pred HhCCCceeEEEec
Q 043533 278 FDAVFSHYKITPI 290 (301)
Q Consensus 278 ~~aGf~~~~~~~~ 290 (301)
+++||+++.+...
T Consensus 403 ~~aGF~~i~~~d~ 415 (475)
T PLN02336 403 KDAGFDDVIAEDR 415 (475)
T ss_pred HHCCCeeeeeecc
Confidence 9999999977654
No 18
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.51 E-value=1.7e-13 Score=118.69 Aligned_cols=124 Identities=15% Similarity=0.202 Sum_probs=97.6
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCc-chhHHH-------
Q 043533 151 GSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FIPP-ANAFLF------- 213 (301)
Q Consensus 151 ~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~p~-~D~i~~------- 213 (301)
++|||||||+|.++..+++.+|+.+++++|+ +++++.+++ .++++++.+|+.+ +.+. ||+|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 4799999999999999999999999999999 777776653 4689999999976 5666 999886
Q ss_pred ----HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEe
Q 043533 214 ----KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITP 289 (301)
Q Consensus 214 ----~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 289 (301)
.+|+++++.|+| ||++++.+...+..... .. + .......+..+|.++++++||+.++...
T Consensus 81 ~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~------~~--~-----~~~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 81 KDKMDLFSNISRHLKD---GGHLVLADFIANLLSAI------EH--E-----ETTSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred CCHHHHHHHHHHHcCC---CCEEEEEEcccccCccc------cc--c-----ccccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 889999999999 99999988743321100 00 0 0011145899999999999999998876
Q ss_pred c
Q 043533 290 I 290 (301)
Q Consensus 290 ~ 290 (301)
+
T Consensus 145 ~ 145 (224)
T smart00828 145 A 145 (224)
T ss_pred C
Confidence 5
No 19
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.51 E-value=1.4e-13 Score=122.81 Aligned_cols=134 Identities=18% Similarity=0.284 Sum_probs=103.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCCc--chhHHH--
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEA-FPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-FIPP--ANAFLF-- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~-~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~~p~--~D~i~~-- 213 (301)
+....+|||||||+|..+..+++. .|+.+++++|+ +.+++.+++ .+++++..+|+.+ ++++ ||+|++
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 566789999999999998887776 46778999999 888888875 3689999999977 6664 898875
Q ss_pred ---------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCce
Q 043533 214 ---------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSH 284 (301)
Q Consensus 214 ---------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~ 284 (301)
++|++++++|+| ||++++.+......... ....++.+.....+...+..+|.++|+++||..
T Consensus 155 v~~~~~d~~~~l~~~~r~Lkp---GG~l~i~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~ 225 (272)
T PRK11873 155 VINLSPDKERVFKEAFRVLKP---GGRFAISDVVLRGELPE------EIRNDAELYAGCVAGALQEEEYLAMLAEAGFVD 225 (272)
T ss_pred cccCCCCHHHHHHHHHHHcCC---CcEEEEEEeeccCCCCH------HHHHhHHHHhccccCCCCHHHHHHHHHHCCCCc
Confidence 789999999999 99999998875443211 111222333223445678999999999999999
Q ss_pred eEEEe
Q 043533 285 YKITP 289 (301)
Q Consensus 285 ~~~~~ 289 (301)
+++..
T Consensus 226 v~i~~ 230 (272)
T PRK11873 226 ITIQP 230 (272)
T ss_pred eEEEe
Confidence 87744
No 20
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.49 E-value=1.9e-13 Score=124.57 Aligned_cols=133 Identities=12% Similarity=0.097 Sum_probs=95.3
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC-------CCCCeEEEeCCCCC-CCCc-chhHHH-----
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLP-------EADNLKYIAGDMLR-FIPP-ANAFLF----- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~-------~~~ri~~~~~D~~~-~~p~-~D~i~~----- 213 (301)
..++|||||||+|.++..+++.++. +++++|. +.++..++ ...+|.++.+|+.+ +.+. ||+|++
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl~ 200 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLY 200 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChhh
Confidence 4589999999999999999999876 5999998 55443221 14589999999876 6554 998886
Q ss_pred ------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEE
Q 043533 214 ------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKI 287 (301)
Q Consensus 214 ------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~ 287 (301)
.+|++++++|+| ||.+++-+...+.+........ ..+..+. ..-..+|.+++.+||+++||+.+++
T Consensus 201 H~~dp~~~L~~l~~~Lkp---GG~lvl~~~~i~~~~~~~l~p~-~~y~~~~----~~~~lps~~~l~~~L~~aGF~~i~~ 272 (322)
T PRK15068 201 HRRSPLDHLKQLKDQLVP---GGELVLETLVIDGDENTVLVPG-DRYAKMR----NVYFIPSVPALKNWLERAGFKDVRI 272 (322)
T ss_pred ccCCHHHHHHHHHHhcCC---CcEEEEEEEEecCCCccccCch-hHHhcCc----cceeCCCHHHHHHHHHHcCCceEEE
Confidence 899999999999 8988776655554432110000 0111100 0012468999999999999999988
Q ss_pred Eec
Q 043533 288 TPI 290 (301)
Q Consensus 288 ~~~ 290 (301)
...
T Consensus 273 ~~~ 275 (322)
T PRK15068 273 VDV 275 (322)
T ss_pred EeC
Confidence 765
No 21
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.46 E-value=6.6e-14 Score=107.68 Aligned_cols=84 Identities=21% Similarity=0.467 Sum_probs=71.1
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCC-CC-CCCc-chhHHH-----
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDM-LR-FIPP-ANAFLF----- 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~-~~-~~p~-~D~i~~----- 213 (301)
..+|||||||+|.++..+++++|+.+++++|. |++++.+++ .+||+++.+|+ .. +.+. ||+|++
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTL 81 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSG
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCcc
Confidence 57999999999999999999999999999999 888887764 68999999999 33 3333 776554
Q ss_pred ----------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 ----------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 ----------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
++|+++++.|+| ||+++|.+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~p---gG~lvi~~ 111 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKP---GGRLVINT 111 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCC---CcEEEEEE
Confidence 569999999999 88887764
No 22
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.46 E-value=5.2e-13 Score=120.78 Aligned_cols=134 Identities=11% Similarity=0.077 Sum_probs=94.4
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC-------CCCCeEEEeCCCCC-CCC-cchhHHH----
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLP-------EADNLKYIAGDMLR-FIP-PANAFLF---- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~-------~~~ri~~~~~D~~~-~~p-~~D~i~~---- 213 (301)
.+.++|||||||+|.++..++..++. +++++|. +.++..+. ...++.+..+|+.+ +.. .||+|++
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gvL 198 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVL 198 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcchh
Confidence 44689999999999999999988765 7999998 65654321 24678888888765 433 3999876
Q ss_pred -------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeE
Q 043533 214 -------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYK 286 (301)
Q Consensus 214 -------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 286 (301)
..|++++++|+| ||.+++.+...+...... +....... .|. .....++.+++..||+++||+.++
T Consensus 199 ~H~~dp~~~L~el~r~Lkp---GG~Lvletl~i~g~~~~~-l~p~~ry~--k~~--nv~flpS~~~L~~~L~~aGF~~V~ 270 (314)
T TIGR00452 199 YHRKSPLEHLKQLKHQLVI---KGELVLETLVIDGDLNTV-LVPKDRYA--KMK--NVYFIPSVSALKNWLEKVGFENFR 270 (314)
T ss_pred hccCCHHHHHHHHHHhcCC---CCEEEEEEEEecCccccc-cCchHHHH--hcc--ccccCCCHHHHHHHHHHCCCeEEE
Confidence 899999999999 899988777665432210 00000000 000 001135899999999999999998
Q ss_pred EEec
Q 043533 287 ITPI 290 (301)
Q Consensus 287 ~~~~ 290 (301)
+...
T Consensus 271 i~~~ 274 (314)
T TIGR00452 271 ILDV 274 (314)
T ss_pred EEec
Confidence 8754
No 23
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.45 E-value=6.3e-14 Score=114.16 Aligned_cols=125 Identities=24% Similarity=0.299 Sum_probs=91.6
Q ss_pred CCCeEEEecCCccHHHHHHH-HHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CCc-chhHHH---
Q 043533 149 GLGSLVDVGGGNVSFSRIIS-EAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-F--IPP-ANAFLF--- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~-~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~--~p~-~D~i~~--- 213 (301)
+..+|||+|||+|.++..++ +.+|+.+++++|+ +++++.|++ .++++|+.+|+.+ + ++. ||+|++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~ 82 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV 82 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence 46799999999999999999 5689999999999 999998875 4589999999998 5 434 998887
Q ss_pred --------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhh--hhchhhccccCCccCCHHHHHHHHHhCC
Q 043533 214 --------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKF--LFDIVMSVNATGKERTESEWAKLFFDAV 281 (301)
Q Consensus 214 --------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~--~~d~~~~~~~~g~~rt~~e~~~ll~~aG 281 (301)
.+|+++.+.|++ ||.+++.+.......... +.+... .-.+.+.. .+. +.++|..+|++||
T Consensus 83 l~~~~~~~~~l~~~~~~lk~---~G~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~ag 152 (152)
T PF13847_consen 83 LHHFPDPEKVLKNIIRLLKP---GGILIISDPNHNDELPEQ-LEELMNLYSEVWSMIY--IGN--DKEEWKYILEEAG 152 (152)
T ss_dssp GGGTSHHHHHHHHHHHHEEE---EEEEEEEEEEHSHHHHHH-HHHHHHHHHHHHHHCC-------CCCGHHHHHHHTT
T ss_pred hhhccCHHHHHHHHHHHcCC---CcEEEEEECChHHHHHHH-HHHHHHHHHHHhhhhh--ccc--CHHHHHHHHHhcC
Confidence 899999999999 899988888722211111 111011 11112111 122 7889999999998
No 24
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.45 E-value=4.9e-13 Score=118.24 Aligned_cols=142 Identities=13% Similarity=0.116 Sum_probs=96.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC--CCC-c-chhHHH--
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR--FIP-P-ANAFLF-- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~--~~p-~-~D~i~~-- 213 (301)
+...+|||||||+|.++..+++. +.+++++|+ +++++.|++ .++++++.+|+.+ +.+ . ||+|++
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 44579999999999999999987 468999999 899988764 3679999999865 333 3 898886
Q ss_pred ---------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhcc-----ccCCccCCHHHHHHHHHh
Q 043533 214 ---------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSV-----NATGKERTESEWAKLFFD 279 (301)
Q Consensus 214 ---------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~g~~rt~~e~~~ll~~ 279 (301)
.+|++++++|+| ||.+++...........+.+..........+.. .......+.+++.++|++
T Consensus 121 vl~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~ 197 (255)
T PRK11036 121 VLEWVADPKSVLQTLWSVLRP---GGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEE 197 (255)
T ss_pred HHHhhCCHHHHHHHHHHHcCC---CeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHH
Confidence 789999999999 899887754322110000000000000000000 001124678999999999
Q ss_pred CCCceeEEEecCCce
Q 043533 280 AVFSHYKITPIFGMK 294 (301)
Q Consensus 280 aGf~~~~~~~~~~~~ 294 (301)
+||+++.+.-+.+++
T Consensus 198 aGf~~~~~~gi~~~~ 212 (255)
T PRK11036 198 AGWQIMGKTGVRVFH 212 (255)
T ss_pred CCCeEeeeeeEEEEe
Confidence 999999877665443
No 25
>PRK08317 hypothetical protein; Provisional
Probab=99.43 E-value=1.4e-12 Score=113.47 Aligned_cols=145 Identities=15% Similarity=0.182 Sum_probs=101.4
Q ss_pred HHHhhhhhcccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCCc--
Q 043533 138 VVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR-FIPP-- 207 (301)
Q Consensus 138 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~-~~p~-- 207 (301)
++ +.++ +....+|||+|||+|.++..+++.+ |..+++++|+ +.+++.+++ ..++++..+|+.. +++.
T Consensus 11 ~~-~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~ 87 (241)
T PRK08317 11 TF-ELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGS 87 (241)
T ss_pred HH-HHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCC
Confidence 44 5555 6677899999999999999999988 7889999999 777766653 4679999999876 5553
Q ss_pred chhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhh-hhhhhhhchhhccccCCccCCHHHHHH
Q 043533 208 ANAFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHEL-TETKFLFDIVMSVNATGKERTESEWAK 275 (301)
Q Consensus 208 ~D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~-~~~~~~~d~~~~~~~~g~~rt~~e~~~ 275 (301)
+|+|++ .++++++++|+| ||.+++.+.........+.. .......... ........+..+|.+
T Consensus 88 ~D~v~~~~~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 162 (241)
T PRK08317 88 FDAVRSDRVLQHLEDPARALAEIARVLRP---GGRVVVLDTDWDTLVWHSGDRALMRKILNFW--SDHFADPWLGRRLPG 162 (241)
T ss_pred ceEEEEechhhccCCHHHHHHHHHHHhcC---CcEEEEEecCCCceeecCCChHHHHHHHHHH--HhcCCCCcHHHHHHH
Confidence 898776 799999999999 89999887532211110000 0001111111 011223456678999
Q ss_pred HHHhCCCceeEEEec
Q 043533 276 LFFDAVFSHYKITPI 290 (301)
Q Consensus 276 ll~~aGf~~~~~~~~ 290 (301)
+|+++||+.+.+...
T Consensus 163 ~l~~aGf~~~~~~~~ 177 (241)
T PRK08317 163 LFREAGLTDIEVEPY 177 (241)
T ss_pred HHHHcCCCceeEEEE
Confidence 999999998876543
No 26
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.42 E-value=1.3e-12 Score=110.18 Aligned_cols=117 Identities=21% Similarity=0.312 Sum_probs=91.5
Q ss_pred hhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCCc-chhHH
Q 043533 141 SECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFIPP-ANAFL 212 (301)
Q Consensus 141 ~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~p~-~D~i~ 212 (301)
+.++ +....+|||||||+|.++..+++++|+.+++++|. +++++.+++ .++++++.+|...+++. +|+|+
T Consensus 25 ~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~ 102 (187)
T PRK08287 25 SKLE--LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIF 102 (187)
T ss_pred HhcC--CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEE
Confidence 4445 56778999999999999999999999999999999 888887764 35799999998655555 89888
Q ss_pred H--------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCce
Q 043533 213 F--------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSH 284 (301)
Q Consensus 213 ~--------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~ 284 (301)
+ .+++++++.|+| ||++++..... -+..++.+++++.||+.
T Consensus 103 ~~~~~~~~~~~l~~~~~~Lk~---gG~lv~~~~~~----------------------------~~~~~~~~~l~~~g~~~ 151 (187)
T PRK08287 103 IGGSGGNLTAIIDWSLAHLHP---GGRLVLTFILL----------------------------ENLHSALAHLEKCGVSE 151 (187)
T ss_pred ECCCccCHHHHHHHHHHhcCC---CeEEEEEEecH----------------------------hhHHHHHHHHHHCCCCc
Confidence 6 799999999999 88876643210 12455677889999887
Q ss_pred eEEEec
Q 043533 285 YKITPI 290 (301)
Q Consensus 285 ~~~~~~ 290 (301)
+++..+
T Consensus 152 ~~~~~~ 157 (187)
T PRK08287 152 LDCVQL 157 (187)
T ss_pred ceEEEE
Confidence 765443
No 27
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.41 E-value=3.5e-12 Score=106.57 Aligned_cols=158 Identities=13% Similarity=0.205 Sum_probs=114.3
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCCCC--cchh
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIAGDMLRFIP--PANA 210 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~~D~~~~~p--~~D~ 210 (301)
+.+++ ..++ .....+|+|+|||+|..+..|++++|..+++++|. ++|++.|++ ..+++|..+|..+=.| ..|+
T Consensus 19 a~dLl-a~Vp--~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dl 95 (257)
T COG4106 19 ARDLL-ARVP--LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDL 95 (257)
T ss_pred HHHHH-hhCC--ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccch
Confidence 34577 7777 78889999999999999999999999999999999 999999976 7899999999976333 4888
Q ss_pred HHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhh-----hchhhcc--ccCCccCCHHH
Q 043533 211 FLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFL-----FDIVMSV--NATGKERTESE 272 (301)
Q Consensus 211 i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~-----~d~~~~~--~~~g~~rt~~e 272 (301)
++. ++|.++...|.| ||.+.+ . +|++...+.+..+... +.-.+-. .......+.+.
T Consensus 96 lfaNAvlqWlpdH~~ll~rL~~~L~P---gg~LAV-Q--mPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~ 169 (257)
T COG4106 96 LFANAVLQWLPDHPELLPRLVSQLAP---GGVLAV-Q--MPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAA 169 (257)
T ss_pred hhhhhhhhhccccHHHHHHHHHhhCC---CceEEE-E--CCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHH
Confidence 887 999999999999 774444 3 4666555422111111 1111111 01234568899
Q ss_pred HHHHHHhCCCceeEEEec-----CCceeEEEEeC
Q 043533 273 WAKLFFDAVFSHYKITPI-----FGMKSLIEVYP 301 (301)
Q Consensus 273 ~~~ll~~aGf~~~~~~~~-----~~~~~~i~a~~ 301 (301)
|-++|...+-++--++.+ ++...||+..|
T Consensus 170 Yy~lLa~~~~rvDiW~T~Y~h~l~~a~aIvdWvk 203 (257)
T COG4106 170 YYELLAPLACRVDIWHTTYYHQLPGADAIVDWVK 203 (257)
T ss_pred HHHHhCcccceeeeeeeeccccCCCccchhhhee
Confidence 999999998776544433 45677777653
No 28
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.40 E-value=8.6e-13 Score=119.85 Aligned_cols=137 Identities=12% Similarity=0.117 Sum_probs=94.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCc--chhHHH----
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FIPP--ANAFLF---- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~p~--~D~i~~---- 213 (301)
...+|||||||+|.++..+++ ++.+++++|. +++++.|+. ..+|+++.+|+.+ +.+. ||+|++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 346899999999999998886 4679999999 888887763 2489999999866 5443 998886
Q ss_pred -------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhc-cccCCccCCHHHHHHHHHhCCCcee
Q 043533 214 -------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMS-VNATGKERTESEWAKLFFDAVFSHY 285 (301)
Q Consensus 214 -------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~-~~~~g~~rt~~e~~~ll~~aGf~~~ 285 (301)
.+|+++++.|+| ||.+++......................+.-- .....+.++.+|+.++|+++||+++
T Consensus 209 eHv~d~~~~L~~l~r~LkP---GG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~ 285 (322)
T PLN02396 209 EHVANPAEFCKSLSALTIP---NGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVK 285 (322)
T ss_pred HhcCCHHHHHHHHHHHcCC---CcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEE
Confidence 999999999999 89888876522111000000000001111000 0012246799999999999999999
Q ss_pred EEEec
Q 043533 286 KITPI 290 (301)
Q Consensus 286 ~~~~~ 290 (301)
++..+
T Consensus 286 ~~~G~ 290 (322)
T PLN02396 286 EMAGF 290 (322)
T ss_pred EEeee
Confidence 88554
No 29
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.40 E-value=3.2e-12 Score=113.15 Aligned_cols=142 Identities=12% Similarity=0.177 Sum_probs=99.8
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCCCC--cchh
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIAGDMLRFIP--PANA 210 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~~D~~~~~p--~~D~ 210 (301)
+..++ +.++ ..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+.+..+ .+|+
T Consensus 20 ~~~ll-~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~ 96 (258)
T PRK01683 20 ARDLL-ARVP--LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDL 96 (258)
T ss_pred HHHHH-hhCC--CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccE
Confidence 45567 6666 67778999999999999999999999999999999 889988876 5679999999876323 3898
Q ss_pred HHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhh---hhh--hchhhccc--cCCccCCHHH
Q 043533 211 FLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTET---KFL--FDIVMSVN--ATGKERTESE 272 (301)
Q Consensus 211 i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~---~~~--~d~~~~~~--~~g~~rt~~e 272 (301)
|++ ++|++++++|+| ||.+++.- +++...+..... ... +...+... ......+..+
T Consensus 97 v~~~~~l~~~~d~~~~l~~~~~~Lkp---gG~~~~~~---~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 170 (258)
T PRK01683 97 IFANASLQWLPDHLELFPRLVSLLAP---GGVLAVQM---PDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHA 170 (258)
T ss_pred EEEccChhhCCCHHHHHHHHHHhcCC---CcEEEEEC---CCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHH
Confidence 876 899999999999 88877742 222211100000 000 00000000 1123467889
Q ss_pred HHHHHHhCCCcee
Q 043533 273 WAKLFFDAVFSHY 285 (301)
Q Consensus 273 ~~~ll~~aGf~~~ 285 (301)
+.+++.++|+.+.
T Consensus 171 ~~~~l~~~g~~v~ 183 (258)
T PRK01683 171 YYDALAPAACRVD 183 (258)
T ss_pred HHHHHHhCCCcee
Confidence 9999999998753
No 30
>PRK06922 hypothetical protein; Provisional
Probab=99.39 E-value=1.2e-12 Score=126.65 Aligned_cols=153 Identities=16% Similarity=0.265 Sum_probs=109.4
Q ss_pred hhHHHHHhhhcC-CCCc-hhHHhhCCChhHHhhcCchHHHHHHHHhhccccc--chHHHHHhhhhhcccCCCeEEEecCC
Q 043533 84 APFQSLSSWFKG-TELT-LWETVHGIKFWEFMNQNPAINQRFNEAMASDSEI--MTSFVVKSECKQIFEGLGSLVDVGGG 159 (301)
Q Consensus 84 ~~~~~L~~~l~~-g~~~-~~~~~~g~~~~e~~~~~~~~~~~f~~am~~~~~~--~~~~~~~~~~~~~~~~~~~vlDvGgG 159 (301)
..-..|.++... .+.+ .+++ ....+|+++..+++..+.|...|...... ...... ..++ +.+..+|||||||
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~r-~~~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~-~i~d--~~~g~rVLDIGCG 428 (677)
T PRK06922 353 AVGEALITFCVEAEKIDMMHAR-ANVLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKR-IILD--YIKGDTIVDVGAG 428 (677)
T ss_pred HHHHHHHHHHHhhhhcchHHHH-HHhHHHHHhccChhhHhHHHhHHHHHHhccccHHHHH-HHhh--hcCCCEEEEeCCC
Confidence 344555555433 2212 2432 23468999988888888888777654332 122222 3445 4567899999999
Q ss_pred ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-C--CCc--chhHHH---------------
Q 043533 160 NVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR-F--IPP--ANAFLF--------------- 213 (301)
Q Consensus 160 ~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~-~--~p~--~D~i~~--------------- 213 (301)
+|.++..+++.+|+.+++++|+ +.+++.+++ ..++.++.+|+.+ + ++. +|+|++
T Consensus 429 TG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g 508 (677)
T PRK06922 429 GGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEG 508 (677)
T ss_pred CCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhccccc
Confidence 9999999999999999999999 778887764 3568888899866 3 443 787642
Q ss_pred ---------HHHHHHHHhcccCCCCcEEEEEeeeeCCCc
Q 043533 214 ---------KILKKRREAIASNGERGKVIIIDIVINAEE 243 (301)
Q Consensus 214 ---------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~ 243 (301)
++|++++++|+| ||+++|.|...+++.
T Consensus 509 ~~f~~edl~kiLreI~RVLKP---GGrLII~D~v~~E~~ 544 (677)
T PRK06922 509 KKFNHEVIKKGLQSAYEVLKP---GGRIIIRDGIMTEDK 544 (677)
T ss_pred ccccHHHHHHHHHHHHHHcCC---CcEEEEEeCccCCch
Confidence 678999999999 999999997666543
No 31
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.38 E-value=1.2e-12 Score=116.41 Aligned_cols=146 Identities=13% Similarity=0.141 Sum_probs=97.4
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIP 206 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p 206 (301)
.+.++ +.++ +.++.+|||||||-|.+++.+++++ +++++++.+ ++..+.+++ .+++++..+|+.+ ++
T Consensus 51 ~~~~~-~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~-~~ 125 (273)
T PF02353_consen 51 LDLLC-EKLG--LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD-LP 125 (273)
T ss_dssp HHHHH-TTTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---
T ss_pred HHHHH-HHhC--CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc-cC
Confidence 34566 7776 8888999999999999999999998 899999999 565555432 5789999999865 33
Q ss_pred -cchhHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhh-hhhchhhccccCCccCCHH
Q 043533 207 -PANAFLF-------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETK-FLFDIVMSVNATGKERTES 271 (301)
Q Consensus 207 -~~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~-~~~d~~~~~~~~g~~rt~~ 271 (301)
.||.|++ ..++++.+.|+| ||++++............ ..... .+..-. +..+|..++..
T Consensus 126 ~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkp---gG~~~lq~i~~~~~~~~~-~~~~~~~~i~ky--iFPgg~lps~~ 199 (273)
T PF02353_consen 126 GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKP---GGRLVLQTITHRDPPYHA-ERRSSSDFIRKY--IFPGGYLPSLS 199 (273)
T ss_dssp -S-SEEEEESEGGGTCGGGHHHHHHHHHHHSET---TEEEEEEEEEE--HHHHH-CTTCCCHHHHHH--TSTTS---BHH
T ss_pred CCCCEEEEEechhhcChhHHHHHHHHHHHhcCC---CcEEEEEecccccccchh-hcCCCceEEEEe--eCCCCCCCCHH
Confidence 4898776 889999999999 899888777766543321 00000 112122 23678888999
Q ss_pred HHHHHHHhCCCceeEEEecC
Q 043533 272 EWAKLFFDAVFSHYKITPIF 291 (301)
Q Consensus 272 e~~~ll~~aGf~~~~~~~~~ 291 (301)
++...++++||++..+....
T Consensus 200 ~~~~~~~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 200 EILRAAEDAGLEVEDVENLG 219 (273)
T ss_dssp HHHHHHHHTT-EEEEEEE-H
T ss_pred HHHHHHhcCCEEEEEEEEcC
Confidence 99999999999999887653
No 32
>PRK05785 hypothetical protein; Provisional
Probab=99.36 E-value=9.2e-12 Score=108.09 Aligned_cols=144 Identities=12% Similarity=0.036 Sum_probs=97.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCCc--chhHHH-----------
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLR-FIPP--ANAFLF----------- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~-~~p~--~D~i~~----------- 213 (301)
...+|||||||+|.++..+++.+ +.+++++|+ ++|++.+++. ..++.+|+.+ |+++ ||+|++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~ 127 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDNIE 127 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCCHH
Confidence 46799999999999999999987 679999999 9999998753 3467889887 7775 999887
Q ss_pred HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccc-cCC-------------ccCCHHHHHHHHHh
Q 043533 214 KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN-ATG-------------KERTESEWAKLFFD 279 (301)
Q Consensus 214 ~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~-~~g-------------~~rt~~e~~~ll~~ 279 (301)
+.|++++++|+| . +.++|...|+......+..+....-+..+.. .++ ...+.+++.+++++
T Consensus 128 ~~l~e~~RvLkp---~--~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~ 202 (226)
T PRK05785 128 KVIAEFTRVSRK---Q--VGFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEK 202 (226)
T ss_pred HHHHHHHHHhcC---c--eEEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 899999999999 3 4456654443321110100000000000110 111 23588999999999
Q ss_pred CCCceeEEEecC-CceeEEEEeC
Q 043533 280 AVFSHYKITPIF-GMKSLIEVYP 301 (301)
Q Consensus 280 aGf~~~~~~~~~-~~~~~i~a~~ 301 (301)
+| +.++.+... |--.+..++|
T Consensus 203 ~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 203 YA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred Hh-CceEEEEccccEEEEEEEee
Confidence 84 767777764 4456666654
No 33
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.35 E-value=2.2e-12 Score=105.26 Aligned_cols=124 Identities=17% Similarity=0.191 Sum_probs=86.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCC--cchhHHH---------
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLR-FIP--PANAFLF--------- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~-~~p--~~D~i~~--------- 213 (301)
.....+|||||||+|.++..+++... +++++|. +.+++. .++.....+... +.+ .||+|++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc
Confidence 45678999999999999999977644 9999999 777766 223333322222 233 2898887
Q ss_pred --HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccc--cCCccCCHHHHHHHHHhCCCceeE
Q 043533 214 --KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN--ATGKERTESEWAKLFFDAVFSHYK 286 (301)
Q Consensus 214 --~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~--~~g~~rt~~e~~~ll~~aGf~~~~ 286 (301)
.+|+++++.|+| ||.+++.+...... ... ....+.+... .....++.++|+++++++||++++
T Consensus 94 ~~~~l~~l~~~Lkp---gG~l~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 94 PEEFLKELSRLLKP---GGYLVISDPNRDDP-SPR------SFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp HHHHHHHHHHCEEE---EEEEEEEEEBTTSH-HHH------HHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHhcCC---CCEEEEEEcCCcch-hhh------HHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 999999999999 88888888755331 111 1111111111 223567999999999999999886
No 34
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.34 E-value=8e-12 Score=106.26 Aligned_cols=129 Identities=21% Similarity=0.217 Sum_probs=95.6
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-FIP 206 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~~p 206 (301)
.+.++ +.++ .....+|||+|||+|..+..|+++ +.+++++|+ +.+++.+++ ..++++..+|+.+ +++
T Consensus 19 ~~~l~-~~l~--~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 93 (197)
T PRK11207 19 HSEVL-EAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD 93 (197)
T ss_pred hHHHH-Hhcc--cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC
Confidence 34566 6666 555689999999999999999986 568999999 888887764 2458888899876 555
Q ss_pred c-chhHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHH
Q 043533 207 P-ANAFLF-------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESE 272 (301)
Q Consensus 207 ~-~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e 272 (301)
. ||+|++ .++++++++|+| ||.+++++...+++...+ ... ....+.+|
T Consensus 94 ~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~~~~~~~~~~~~~~~~--------~~~-------~~~~~~~e 155 (197)
T PRK11207 94 GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKP---GGYNLIVAAMDTADYPCT--------VGF-------PFAFKEGE 155 (197)
T ss_pred CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCC---CcEEEEEEEecCCCCCCC--------CCC-------CCccCHHH
Confidence 5 898764 889999999999 899877776544322100 000 11257889
Q ss_pred HHHHHHhCCCceeEEE
Q 043533 273 WAKLFFDAVFSHYKIT 288 (301)
Q Consensus 273 ~~~ll~~aGf~~~~~~ 288 (301)
+.++++ ||+.+...
T Consensus 156 l~~~~~--~~~~~~~~ 169 (197)
T PRK11207 156 LRRYYE--GWEMVKYN 169 (197)
T ss_pred HHHHhC--CCeEEEee
Confidence 999997 89988763
No 35
>PRK04266 fibrillarin; Provisional
Probab=99.34 E-value=1.1e-11 Score=107.34 Aligned_cols=132 Identities=8% Similarity=0.053 Sum_probs=94.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHh----cCCCCCCeEEEeCCCCCC-----CCc-chhHHH--
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVA----NLPEADNLKYIAGDMLRF-----IPP-ANAFLF-- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~----~a~~~~ri~~~~~D~~~~-----~p~-~D~i~~-- 213 (301)
+.+..+|||+|||+|.++..+++..+..+++++|+ +++++ .+++..+|.++.+|...+ +++ +|+|+.
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d~ 149 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQDV 149 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEECC
Confidence 56778999999999999999999988778999999 76665 444457899999998653 233 888875
Q ss_pred -------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeE
Q 043533 214 -------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYK 286 (301)
Q Consensus 214 -------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 286 (301)
.+|+++++.|+| ||+++|.=...+-+...+ . .+..++..++++++||+.++
T Consensus 150 ~~p~~~~~~L~~~~r~LKp---GG~lvI~v~~~~~d~~~~-----~--------------~~~~~~~~~~l~~aGF~~i~ 207 (226)
T PRK04266 150 AQPNQAEIAIDNAEFFLKD---GGYLLLAIKARSIDVTKD-----P--------------KEIFKEEIRKLEEGGFEILE 207 (226)
T ss_pred CChhHHHHHHHHHHHhcCC---CcEEEEEEecccccCcCC-----H--------------HHHHHHHHHHHHHcCCeEEE
Confidence 358999999999 999998511111000000 0 01124446999999999999
Q ss_pred EEecCC---ceeEEEEe
Q 043533 287 ITPIFG---MKSLIEVY 300 (301)
Q Consensus 287 ~~~~~~---~~~~i~a~ 300 (301)
+..... .+..+.++
T Consensus 208 ~~~l~p~~~~h~~~v~~ 224 (226)
T PRK04266 208 VVDLEPYHKDHAAVVAR 224 (226)
T ss_pred EEcCCCCcCCeEEEEEE
Confidence 988743 36666554
No 36
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.34 E-value=6.6e-12 Score=110.65 Aligned_cols=144 Identities=17% Similarity=0.219 Sum_probs=113.1
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIP 206 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p 206 (301)
.+.++ +.+. +.++.+|||||||-|.+++.++++| +.+++++++ ++..+.+++ .++|++...|+.+..+
T Consensus 61 ~~~~~-~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e 136 (283)
T COG2230 61 LDLIL-EKLG--LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEE 136 (283)
T ss_pred HHHHH-HhcC--CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccc
Confidence 34566 7777 8999999999999999999999999 999999999 777666654 4689999999865333
Q ss_pred cchhHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHH
Q 043533 207 PANAFLF-------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEW 273 (301)
Q Consensus 207 ~~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~ 273 (301)
.||-|++ ..++++++.|+| ||+++++....+...... ...+..-. ...+|..++..++
T Consensus 137 ~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~---~G~~llh~I~~~~~~~~~----~~~~i~~y--iFPgG~lPs~~~i 207 (283)
T COG2230 137 PFDRIVSVGMFEHVGKENYDDFFKKVYALLKP---GGRMLLHSITGPDQEFRR----FPDFIDKY--IFPGGELPSISEI 207 (283)
T ss_pred ccceeeehhhHHHhCcccHHHHHHHHHhhcCC---CceEEEEEecCCCccccc----chHHHHHh--CCCCCcCCCHHHH
Confidence 3898887 899999999999 899999888777654311 01111111 2368888999999
Q ss_pred HHHHHhCCCceeEEEecC
Q 043533 274 AKLFFDAVFSHYKITPIF 291 (301)
Q Consensus 274 ~~ll~~aGf~~~~~~~~~ 291 (301)
.+..+++||.+..+....
T Consensus 208 ~~~~~~~~~~v~~~~~~~ 225 (283)
T COG2230 208 LELASEAGFVVLDVESLR 225 (283)
T ss_pred HHHHHhcCcEEehHhhhc
Confidence 999999999999877654
No 37
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.32 E-value=1.7e-11 Score=108.11 Aligned_cols=137 Identities=18% Similarity=0.189 Sum_probs=95.5
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCCc--ch
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIAGDMLR-FIPP--AN 209 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~~D~~~-~~p~--~D 209 (301)
+..++ +.++ .....+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ ...+.++.+|+.+ ++++ ||
T Consensus 31 a~~l~-~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD 105 (251)
T PRK10258 31 ADALL-AMLP--QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFD 105 (251)
T ss_pred HHHHH-HhcC--ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEE
Confidence 34455 5555 345679999999999999988764 578999999 999988876 3446788999977 6664 89
Q ss_pred hHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHH
Q 043533 210 AFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFF 278 (301)
Q Consensus 210 ~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~ 278 (301)
+|++ .+|++++++|+| ||.+++.......-. . +.......+. ........+.+++.+++.
T Consensus 106 ~V~s~~~l~~~~d~~~~l~~~~~~Lk~---gG~l~~~~~~~~~~~-e--l~~~~~~~~~---~~~~~~~~~~~~l~~~l~ 176 (251)
T PRK10258 106 LAWSNLAVQWCGNLSTALRELYRVVRP---GGVVAFTTLVQGSLP-E--LHQAWQAVDE---RPHANRFLPPDAIEQALN 176 (251)
T ss_pred EEEECchhhhcCCHHHHHHHHHHHcCC---CeEEEEEeCCCCchH-H--HHHHHHHhcc---CCccccCCCHHHHHHHHH
Confidence 8876 889999999999 888877654322111 1 1110011111 012234568999999999
Q ss_pred hCCCcee
Q 043533 279 DAVFSHY 285 (301)
Q Consensus 279 ~aGf~~~ 285 (301)
..|+...
T Consensus 177 ~~~~~~~ 183 (251)
T PRK10258 177 GWRYQHH 183 (251)
T ss_pred hCCceee
Confidence 9988743
No 38
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.28 E-value=2.6e-11 Score=104.71 Aligned_cols=168 Identities=10% Similarity=0.062 Sum_probs=104.0
Q ss_pred hHHhhcCchHHHHHHHHhhcccccchHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcC
Q 043533 110 WEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANL 188 (301)
Q Consensus 110 ~e~~~~~~~~~~~f~~am~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a 188 (301)
|+-....+.....+...|..........++ +.+.....+..+|||||||+|.++..+++. +.+++++|+ ++++..|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a 93 (219)
T TIGR02021 17 WARIYGSGDPVSRVRQTVREGRAAMRRKLL-DWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMA 93 (219)
T ss_pred HHHhhCCchhhHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHH
Confidence 444444444555555555433333344455 444311345789999999999999999886 458999999 8898877
Q ss_pred CC-------CCCeEEEeCCCCCCCCcchhHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhh
Q 043533 189 PE-------ADNLKYIAGDMLRFIPPANAFLF-------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHEL 248 (301)
Q Consensus 189 ~~-------~~ri~~~~~D~~~~~p~~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~ 248 (301)
++ .++++|..+|+.+....||+|++ .+++++++.+++ +.++.+. +......
T Consensus 94 ~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~----~~~i~~~---~~~~~~~-- 164 (219)
T TIGR02021 94 RNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHYPASDMAKALGHLASLTKE----RVIFTFA---PKTAWLA-- 164 (219)
T ss_pred HHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCC----CEEEEEC---CCchHHH--
Confidence 64 25899999998763244886654 678888887776 4333321 1111100
Q ss_pred hhhhhhhchhhccc---cCCccCCHHHHHHHHHhCCCceeEEEecC
Q 043533 249 TETKFLFDIVMSVN---ATGKERTESEWAKLFFDAVFSHYKITPIF 291 (301)
Q Consensus 249 ~~~~~~~d~~~~~~---~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 291 (301)
. ...+.-.+... ..-..++.+++.++++++||+++......
T Consensus 165 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~ 208 (219)
T TIGR02021 165 -F-LKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVS 208 (219)
T ss_pred -H-HHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeeccc
Confidence 0 00111110000 11234589999999999999999887663
No 39
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.27 E-value=2.6e-11 Score=105.49 Aligned_cols=125 Identities=17% Similarity=0.253 Sum_probs=93.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC-CCCc--chhHHH---------
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE--ADNLKYIAGDMLR-FIPP--ANAFLF--------- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~--~~ri~~~~~D~~~-~~p~--~D~i~~--------- 213 (301)
...+|||||||+|.++..+++.+|+.+++++|+ +.++..++. .++++++.+|+.+ +++. ||+|++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 357899999999999999999999999999999 777766654 4589999999977 5553 899887
Q ss_pred --HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEE
Q 043533 214 --KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKIT 288 (301)
Q Consensus 214 --~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 288 (301)
++|++++++|+| ||.+++.+....... .....+. .......+.++|.+++.++ |+.+.+.
T Consensus 114 ~~~~l~~~~~~L~~---~G~l~~~~~~~~~~~------~~~~~~~-----~~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 114 LSQALSELARVLKP---GGLLAFSTFGPGTLH------ELRQSFG-----QHGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred HHHHHHHHHHHcCC---CcEEEEEeCCccCHH------HHHHHHH-----HhccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 899999999999 898887754222110 1011111 0223456888999999988 8876554
No 40
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.24 E-value=8.5e-12 Score=92.40 Aligned_cols=77 Identities=17% Similarity=0.368 Sum_probs=66.2
Q ss_pred EEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCCc--chhHHH-----------HH
Q 043533 154 VDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE---ADNLKYIAGDMLR-FIPP--ANAFLF-----------KI 215 (301)
Q Consensus 154 lDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~---~~ri~~~~~D~~~-~~p~--~D~i~~-----------~i 215 (301)
||||||+|..+..++++ +..+++++|. +++++.+++ ..++++..+|+.+ |+|+ +|+|++ ++
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~ 79 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAA 79 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCHHHH
Confidence 79999999999999999 8899999999 777777765 5677899999988 7775 998887 99
Q ss_pred HHHHHHhcccCCCCcEEEE
Q 043533 216 LKKRREAIASNGERGKVII 234 (301)
Q Consensus 216 L~~~~~aL~p~~~gg~l~i 234 (301)
+++++++||| ||+++|
T Consensus 80 l~e~~rvLk~---gG~l~~ 95 (95)
T PF08241_consen 80 LREIYRVLKP---GGRLVI 95 (95)
T ss_dssp HHHHHHHEEE---EEEEEE
T ss_pred HHHHHHHcCc---CeEEeC
Confidence 9999999999 888765
No 41
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.23 E-value=1.3e-10 Score=97.26 Aligned_cols=120 Identities=17% Similarity=0.172 Sum_probs=93.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCC-cchhHHH-------
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLRFIP-PANAFLF------- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~~~p-~~D~i~~------- 213 (301)
....+|||+|||+|.++..+++..+ +++++|+ |++++.+++ .-+++++.+|+++..+ .||+|++
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPL 95 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCC
Confidence 4457899999999999999999886 8999999 888887764 3468889999876333 3776653
Q ss_pred -------------------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccC
Q 043533 214 -------------------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKER 268 (301)
Q Consensus 214 -------------------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~r 268 (301)
.+|+++.+.|+| ||++++++....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~~~~~~~~~~---------------------------- 144 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKE---GGRVQLIQSSLN---------------------------- 144 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCC---CCEEEEEEeccC----------------------------
Confidence 469999999999 898888763111
Q ss_pred CHHHHHHHHHhCCCceeEEEecCCceeEEEEe
Q 043533 269 TESEWAKLFFDAVFSHYKITPIFGMKSLIEVY 300 (301)
Q Consensus 269 t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~a~ 300 (301)
...++.++++++||....+.....++--++++
T Consensus 145 ~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~ 176 (179)
T TIGR00537 145 GEPDTFDKLDERGFRYEIVAERGLFFEELFAI 176 (179)
T ss_pred ChHHHHHHHHhCCCeEEEEEEeecCceEEEEE
Confidence 24667889999999999988887666555554
No 42
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.22 E-value=6.8e-11 Score=100.36 Aligned_cols=129 Identities=18% Similarity=0.145 Sum_probs=92.0
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCCc
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR-FIPP 207 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~-~~p~ 207 (301)
...++ +.++ .....+|||+|||+|.++..++++ +.+++++|+ +.+++.+++ .-++.+..+|+.. +++.
T Consensus 19 ~~~l~-~~~~--~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~ 93 (195)
T TIGR00477 19 HSAVR-EAVK--TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNE 93 (195)
T ss_pred hHHHH-HHhc--cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccC
Confidence 34566 6665 455689999999999999999986 578999999 888887653 2246777788765 4444
Q ss_pred -chhHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHH
Q 043533 208 -ANAFLF-------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEW 273 (301)
Q Consensus 208 -~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~ 273 (301)
||+|++ .++++++++|+| ||++++++....+.... . ... ....+++|+
T Consensus 94 ~fD~I~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lli~~~~~~~~~~~------~--~~~-------~~~~~~~el 155 (195)
T TIGR00477 94 DYDFIFSTVVFMFLQAGRVPEIIANMQAHTRP---GGYNLIVAAMDTADYPC------H--MPF-------SFTFKEDEL 155 (195)
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHHhCC---CcEEEEEEecccCCCCC------C--CCc-------CccCCHHHH
Confidence 898754 799999999999 89988876543322110 0 000 113578999
Q ss_pred HHHHHhCCCceeEEE
Q 043533 274 AKLFFDAVFSHYKIT 288 (301)
Q Consensus 274 ~~ll~~aGf~~~~~~ 288 (301)
.++++ +|+++...
T Consensus 156 ~~~f~--~~~~~~~~ 168 (195)
T TIGR00477 156 RQYYA--DWELLKYN 168 (195)
T ss_pred HHHhC--CCeEEEee
Confidence 99986 58887766
No 43
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.21 E-value=2.5e-11 Score=102.06 Aligned_cols=86 Identities=19% Similarity=0.206 Sum_probs=73.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCCc-chhHHH-----
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-FIPP-ANAFLF----- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~~p~-~D~i~~----- 213 (301)
+...+|||||||+|..+..++++.|+.+++++|. +++++.+++ .++++++.+|+.+ +... ||+|++
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~~~ 123 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAVAS 123 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccccC
Confidence 3468999999999999999999999999999999 888877764 3459999999876 3333 999988
Q ss_pred --HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 --KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 --~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
.+++++++.|+| ||++++++
T Consensus 124 ~~~~l~~~~~~Lkp---GG~lv~~~ 145 (187)
T PRK00107 124 LSDLVELCLPLLKP---GGRFLALK 145 (187)
T ss_pred HHHHHHHHHHhcCC---CeEEEEEe
Confidence 899999999999 89888774
No 44
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.18 E-value=3.9e-11 Score=99.62 Aligned_cols=93 Identities=17% Similarity=0.356 Sum_probs=77.8
Q ss_pred HHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC-c-c
Q 043533 138 VVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFIP-P-A 208 (301)
Q Consensus 138 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~p-~-~ 208 (301)
++ +.++ .....+|||+|||+|.++..+++++|+.+++++|+ +.+++.++. -+.++++..|.+++.+ . |
T Consensus 23 L~-~~l~--~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~f 99 (170)
T PF05175_consen 23 LL-DNLP--KHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKF 99 (170)
T ss_dssp HH-HHHH--HHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCE
T ss_pred HH-HHHh--hccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccce
Confidence 44 5555 33678999999999999999999999999999999 888887764 2339999999998766 3 9
Q ss_pred hhHHH----------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 209 NAFLF----------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 209 D~i~~----------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
|+|++ ++++++.+.|+| ||.++++-
T Consensus 100 D~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~---~G~l~lv~ 140 (170)
T PF05175_consen 100 DLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKP---GGRLFLVI 140 (170)
T ss_dssp EEEEE---SBTTSHCHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred eEEEEccchhcccccchhhHHHHHHHHHHhccC---CCEEEEEe
Confidence 99887 889999999999 89887644
No 45
>PRK06202 hypothetical protein; Provisional
Probab=99.17 E-value=1.8e-10 Score=100.47 Aligned_cols=136 Identities=15% Similarity=0.084 Sum_probs=88.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHH----CCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCC-c-chhHHH---
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEA----FPGIKCTVLDL-PHAVANLPE---ADNLKYIAGDMLR-FIP-P-ANAFLF--- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~----~P~~~~~~~Dl-p~~~~~a~~---~~ri~~~~~D~~~-~~p-~-~D~i~~--- 213 (301)
.+..+|||||||+|.++..|++. .|+.+++++|+ +++++.+++ ..++++..+|... +.+ . +|+|++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 45679999999999999888764 56789999999 999988875 3456666655433 333 3 898887
Q ss_pred ----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccC-----CccCCHHHHHHHHH
Q 043533 214 ----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNAT-----GKERTESEWAKLFF 278 (301)
Q Consensus 214 ----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----g~~rt~~e~~~ll~ 278 (301)
++|++++++++ |.+++.+...+....-- +........-..+...+ .+-+|.+|+.++++
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~-----~~~~i~dl~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~ 212 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR-----RLVLHNDLIRSRLAYAL-FWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAP 212 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC-----eeEEEeccccCHHHHHH-HHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhh
Confidence 58888888865 45666665444211100 00000000000011111 13579999999999
Q ss_pred hCCCceeEEEec
Q 043533 279 DAVFSHYKITPI 290 (301)
Q Consensus 279 ~aGf~~~~~~~~ 290 (301)
+ ||++...++.
T Consensus 213 ~-Gf~~~~~~~~ 223 (232)
T PRK06202 213 Q-GWRVERQWPF 223 (232)
T ss_pred C-CCeEEeccce
Confidence 9 9998777655
No 46
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.17 E-value=9.1e-11 Score=91.48 Aligned_cols=92 Identities=17% Similarity=0.306 Sum_probs=73.7
Q ss_pred HHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC---CCCc
Q 043533 138 VVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR---FIPP 207 (301)
Q Consensus 138 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~---~~p~ 207 (301)
++ +.+. .....+|||+|||+|.++..+++++|+.+++++|. +.+++.+++ ..+++++.+|+.. ..+.
T Consensus 11 ~~-~~~~--~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (124)
T TIGR02469 11 TL-SKLR--LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLP 87 (124)
T ss_pred HH-HHcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcC
Confidence 44 5554 55567999999999999999999999999999999 777777653 3578999898764 2233
Q ss_pred -chhHHH--------HHHHHHHHhcccCCCCcEEEEE
Q 043533 208 -ANAFLF--------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 208 -~D~i~~--------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
+|+|++ ++++++++.|+| ||.+++.
T Consensus 88 ~~D~v~~~~~~~~~~~~l~~~~~~Lk~---gG~li~~ 121 (124)
T TIGR02469 88 EPDRVFIGGSGGLLQEILEAIWRRLRP---GGRIVLN 121 (124)
T ss_pred CCCEEEECCcchhHHHHHHHHHHHcCC---CCEEEEE
Confidence 898886 799999999999 8877654
No 47
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.17 E-value=2.1e-10 Score=106.96 Aligned_cols=140 Identities=11% Similarity=0.097 Sum_probs=99.9
Q ss_pred HHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCCCCCcchhHH
Q 043533 137 FVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE---ADNLKYIAGDMLRFIPPANAFL 212 (301)
Q Consensus 137 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~---~~ri~~~~~D~~~~~p~~D~i~ 212 (301)
.++ +.++ ..+..+|||||||+|.++..+++.+ +.+++++|+ +++++.+++ ...+++..+|+.+.-..||+|+
T Consensus 158 ~l~-~~l~--l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Iv 233 (383)
T PRK11705 158 LIC-RKLQ--LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIV 233 (383)
T ss_pred HHH-HHhC--CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEE
Confidence 345 5554 5677899999999999999999876 679999999 888887764 3357888888754212388775
Q ss_pred H-------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHh
Q 043533 213 F-------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFD 279 (301)
Q Consensus 213 ~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~ 279 (301)
+ .++++++++|+| ||.+++.+...+...... ..+.+- ....+|..++.+++.++++
T Consensus 234 s~~~~ehvg~~~~~~~l~~i~r~Lkp---GG~lvl~~i~~~~~~~~~-----~~~i~~--yifp~g~lps~~~i~~~~~- 302 (383)
T PRK11705 234 SVGMFEHVGPKNYRTYFEVVRRCLKP---DGLFLLHTIGSNKTDTNV-----DPWINK--YIFPNGCLPSVRQIAQASE- 302 (383)
T ss_pred EeCchhhCChHHHHHHHHHHHHHcCC---CcEEEEEEccCCCCCCCC-----CCCcee--eecCCCcCCCHHHHHHHHH-
Confidence 3 789999999999 898888776444322110 111111 1235677788999888866
Q ss_pred CCCceeEEEecC
Q 043533 280 AVFSHYKITPIF 291 (301)
Q Consensus 280 aGf~~~~~~~~~ 291 (301)
.||.+..+....
T Consensus 303 ~~~~v~d~~~~~ 314 (383)
T PRK11705 303 GLFVMEDWHNFG 314 (383)
T ss_pred CCcEEEEEecCh
Confidence 589988876653
No 48
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.17 E-value=6.6e-11 Score=109.49 Aligned_cols=95 Identities=23% Similarity=0.339 Sum_probs=77.6
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------CCCeEEEeCCCCCCC
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE---------ADNLKYIAGDMLRFI 205 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~---------~~ri~~~~~D~~~~~ 205 (301)
..++ +.++ .....+|||||||+|.++..+++++|+.+++++|. +.+++.+++ ..+++++.+|.++.+
T Consensus 218 rllL-~~lp--~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~ 294 (378)
T PRK15001 218 RFFM-QHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV 294 (378)
T ss_pred HHHH-HhCC--cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC
Confidence 3455 6666 33346999999999999999999999999999999 778877763 137899999998754
Q ss_pred C--cchhHHH----------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 206 P--PANAFLF----------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 206 p--~~D~i~~----------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
+ .||+|++ ++++.++++|+| ||.++++-
T Consensus 295 ~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lkp---GG~L~iV~ 340 (378)
T PRK15001 295 EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI---NGELYIVA 340 (378)
T ss_pred CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhccc---CCEEEEEE
Confidence 3 3888887 789999999999 89988884
No 49
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.16 E-value=5.8e-11 Score=99.53 Aligned_cols=83 Identities=19% Similarity=0.190 Sum_probs=69.7
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCC-cchhHHH-------
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-FIP-PANAFLF------- 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~~p-~~D~i~~------- 213 (301)
..+|||||||+|.++..++..+|+.+++++|. +.+++.+++ .++++++.+|+.+ +.. .||+|++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~~~~~~ 122 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRALASLN 122 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehhhhCHH
Confidence 67999999999999999999999999999999 777765543 3579999999976 333 3998887
Q ss_pred HHHHHHHHhcccCCCCcEEEEE
Q 043533 214 KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 214 ~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
.+++.+++.|+| ||.+++.
T Consensus 123 ~~~~~~~~~Lkp---gG~lvi~ 141 (181)
T TIGR00138 123 VLLELTLNLLKV---GGYFLAY 141 (181)
T ss_pred HHHHHHHHhcCC---CCEEEEE
Confidence 788999999999 8988765
No 50
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.15 E-value=3.7e-10 Score=100.32 Aligned_cols=86 Identities=15% Similarity=0.282 Sum_probs=70.1
Q ss_pred cCCCeEEEecCCccH----HHHHHHHHCC-----CCeEEEeec-hHHHhcCCCC--------------------------
Q 043533 148 EGLGSLVDVGGGNVS----FSRIISEAFP-----GIKCTVLDL-PHAVANLPEA-------------------------- 191 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~----~~~~l~~~~P-----~~~~~~~Dl-p~~~~~a~~~-------------------------- 191 (301)
.+..+|+|+|||+|. +++.+++..| +.+++++|+ +.+++.|+++
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 345799999999996 6777777665 578999999 8999888751
Q ss_pred -------CCeEEEeCCCCC-CCCc--chhHHH-------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 192 -------DNLKYIAGDMLR-FIPP--ANAFLF-------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 192 -------~ri~~~~~D~~~-~~p~--~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
++|+|..+|+.+ +.|. +|+|++ +++++++++|+| ||.+++-.
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~p---GG~L~lg~ 242 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKP---GGYLFLGH 242 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCC---CeEEEEEC
Confidence 379999999988 4433 998887 799999999999 88888754
No 51
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.15 E-value=2.4e-10 Score=109.93 Aligned_cols=131 Identities=12% Similarity=0.141 Sum_probs=98.0
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC---CCC
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----ADNLKYIAGDMLR---FIP 206 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----~~ri~~~~~D~~~---~~p 206 (301)
...++ +.++ ..+..+|||||||+|.++..+++.+ .+++++|. +.+++.++. .++++++.+|+.+ ++|
T Consensus 26 ~~~il-~~l~--~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~ 100 (475)
T PLN02336 26 RPEIL-SLLP--PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNIS 100 (475)
T ss_pred hhHHH-hhcC--ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCC
Confidence 35566 6665 4456799999999999999999885 47999999 888876643 4679999999863 455
Q ss_pred c--chhHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHH
Q 043533 207 P--ANAFLF-------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTES 271 (301)
Q Consensus 207 ~--~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~ 271 (301)
. ||+|++ .+|+++++.|+| ||.+++.|......... .... .....|+..
T Consensus 101 ~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~---gG~l~~~d~~~~~~~~~------~~~~-------~~~~~~~~~ 164 (475)
T PLN02336 101 DGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKV---GGYIFFRESCFHQSGDS------KRKN-------NPTHYREPR 164 (475)
T ss_pred CCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCC---CeEEEEEeccCCCCCcc------cccC-------CCCeecChH
Confidence 3 898887 789999999999 89999988765433211 0100 112235688
Q ss_pred HHHHHHHhCCCceeE
Q 043533 272 EWAKLFFDAVFSHYK 286 (301)
Q Consensus 272 e~~~ll~~aGf~~~~ 286 (301)
+|.+++.++||....
T Consensus 165 ~~~~~f~~~~~~~~~ 179 (475)
T PLN02336 165 FYTKVFKECHTRDED 179 (475)
T ss_pred HHHHHHHHheeccCC
Confidence 999999999998774
No 52
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.13 E-value=2.3e-10 Score=100.55 Aligned_cols=110 Identities=19% Similarity=0.319 Sum_probs=86.3
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCCc--chhHHH------
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFIPP--ANAFLF------ 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~p~--~D~i~~------ 213 (301)
...+|||+|||+|.++..+++.+|+.+++++|. +.+++.++. .++++++.+|++++++. +|+|++
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 346899999999999999999999999999999 888887764 34799999999876543 887753
Q ss_pred -------------------------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccc
Q 043533 214 -------------------------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN 262 (301)
Q Consensus 214 -------------------------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~ 262 (301)
.+++++.+.|+| ||.+++. . .
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~---gG~~~~~-~-----~------------------- 218 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKP---GGWLLLE-I-----G------------------- 218 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhccc---CCEEEEE-E-----C-------------------
Confidence 457888889998 7766551 1 0
Q ss_pred cCCccCCHHHHHHHHHhCCCceeEEEec
Q 043533 263 ATGKERTESEWAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 263 ~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 290 (301)
....+++.++|+++||+.+++..-
T Consensus 219 ----~~~~~~~~~~l~~~gf~~v~~~~d 242 (251)
T TIGR03534 219 ----YDQGEAVRALFEAAGFADVETRKD 242 (251)
T ss_pred ----ccHHHHHHHHHHhCCCCceEEEeC
Confidence 123467889999999998887664
No 53
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.11 E-value=4.3e-10 Score=101.20 Aligned_cols=128 Identities=20% Similarity=0.199 Sum_probs=91.8
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCCc-
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR-FIPP- 207 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~-~~p~- 207 (301)
+.++ ..++ .....+|||||||+|..+..+++. +.+++++|. +.+++.+++ .-++++..+|+.. +++.
T Consensus 110 ~~~~-~~~~--~~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~ 184 (287)
T PRK12335 110 SEVL-EAVQ--TVKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEE 184 (287)
T ss_pred HHHH-HHhh--ccCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCC
Confidence 3355 5554 344569999999999999999986 579999999 788876653 3368888889876 4554
Q ss_pred chhHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHH
Q 043533 208 ANAFLF-------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWA 274 (301)
Q Consensus 208 ~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~ 274 (301)
||+|++ .++++++++|+| ||.++++.....+....+ ... ....+..|++
T Consensus 185 fD~I~~~~vl~~l~~~~~~~~l~~~~~~Lkp---gG~~l~v~~~~~~~~~~~--------~p~-------~~~~~~~el~ 246 (287)
T PRK12335 185 YDFILSTVVLMFLNRERIPAIIKNMQEHTNP---GGYNLIVCAMDTEDYPCP--------MPF-------SFTFKEGELK 246 (287)
T ss_pred ccEEEEcchhhhCCHHHHHHHHHHHHHhcCC---CcEEEEEEecccccCCCC--------CCC-------CcccCHHHHH
Confidence 898754 789999999999 898887665433321110 000 1135788999
Q ss_pred HHHHhCCCceeEEE
Q 043533 275 KLFFDAVFSHYKIT 288 (301)
Q Consensus 275 ~ll~~aGf~~~~~~ 288 (301)
++++. |++++..
T Consensus 247 ~~~~~--~~i~~~~ 258 (287)
T PRK12335 247 DYYQD--WEIVKYN 258 (287)
T ss_pred HHhCC--CEEEEEe
Confidence 99965 8888764
No 54
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.09 E-value=2.7e-10 Score=93.99 Aligned_cols=92 Identities=23% Similarity=0.320 Sum_probs=79.1
Q ss_pred hhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC---CCCcchh
Q 043533 141 SECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR---FIPPANA 210 (301)
Q Consensus 141 ~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~---~~p~~D~ 210 (301)
+.+. ..+...++|||||||..+++++..+|..+++.+|. +++++..++ -++++++.||.-+ +.|.+|.
T Consensus 28 s~L~--~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~da 105 (187)
T COG2242 28 SKLR--PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDA 105 (187)
T ss_pred HhhC--CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCE
Confidence 5555 67788999999999999999999999999999998 777776654 6899999999866 3445999
Q ss_pred HHH-------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 211 FLF-------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 211 i~~-------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
|++ .+|+.+.+.|+| ||++++.-.
T Consensus 106 iFIGGg~~i~~ile~~~~~l~~---ggrlV~nai 136 (187)
T COG2242 106 IFIGGGGNIEEILEAAWERLKP---GGRLVANAI 136 (187)
T ss_pred EEECCCCCHHHHHHHHHHHcCc---CCeEEEEee
Confidence 999 999999999999 898887654
No 55
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.08 E-value=1.8e-09 Score=90.95 Aligned_cols=149 Identities=11% Similarity=0.107 Sum_probs=106.8
Q ss_pred ccCCCe-EEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeE-EEeCCCCC---CC-------Cc
Q 043533 147 FEGLGS-LVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLK-YIAGDMLR---FI-------PP 207 (301)
Q Consensus 147 ~~~~~~-vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~-~~~~D~~~---~~-------p~ 207 (301)
++...+ ||+||+|||..+..+++++|+++..--|. +.....+.. .+++. -+.-|+.+ +. +.
T Consensus 22 l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~ 101 (204)
T PF06080_consen 22 LPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPE 101 (204)
T ss_pred hCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCC
Confidence 455554 99999999999999999999998877787 322222221 12211 11234433 12 22
Q ss_pred -chhHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccc-cCCccCCHHH
Q 043533 208 -ANAFLF-------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN-ATGKERTESE 272 (301)
Q Consensus 208 -~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~-~~g~~rt~~e 272 (301)
+|+|++ .+++.+.++|++ ||.|++.-++.-+....+ .....||..+-.. .....|..++
T Consensus 102 ~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~---gG~L~~YGPF~~~G~~ts---~SN~~FD~sLr~rdp~~GiRD~e~ 175 (204)
T PF06080_consen 102 SFDAIFCINMLHISPWSAVEGLFAGAARLLKP---GGLLFLYGPFNRDGKFTS---ESNAAFDASLRSRDPEWGIRDIED 175 (204)
T ss_pred CcceeeehhHHHhcCHHHHHHHHHHHHHhCCC---CCEEEEeCCcccCCEeCC---cHHHHHHHHHhcCCCCcCccCHHH
Confidence 788886 899999999999 999999988776543211 2345677665543 3456899999
Q ss_pred HHHHHHhCCCceeEEEecCCceeEEEEeC
Q 043533 273 WAKLFFDAVFSHYKITPIFGMKSLIEVYP 301 (301)
Q Consensus 273 ~~~ll~~aGf~~~~~~~~~~~~~~i~a~~ 301 (301)
+.++.+++|++..++..+|.++.+++.+|
T Consensus 176 v~~lA~~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 176 VEALAAAHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred HHHHHHHCCCccCcccccCCCCeEEEEeC
Confidence 99999999999999999998887777765
No 56
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.08 E-value=1.1e-09 Score=96.53 Aligned_cols=115 Identities=18% Similarity=0.210 Sum_probs=84.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCcchhHHH------
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIPPANAFLF------ 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p~~D~i~~------ 213 (301)
....+|||||||+|.+++.+++..+. +++++|+ |.+++.+++ .+++.+..+|. .||+|++
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~-~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~~~~ 191 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAK-KVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANILANP 191 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCC-eEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCcHHH
Confidence 45689999999999999988776543 7999999 888887765 13444444432 3677654
Q ss_pred --HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEecC
Q 043533 214 --KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIF 291 (301)
Q Consensus 214 --~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 291 (301)
.+++++.+.|+| ||.+++..... ...+++.+.+++.||+..++....
T Consensus 192 ~~~l~~~~~~~Lkp---gG~lilsgi~~----------------------------~~~~~v~~~l~~~Gf~~~~~~~~~ 240 (250)
T PRK00517 192 LLELAPDLARLLKP---GGRLILSGILE----------------------------EQADEVLEAYEEAGFTLDEVLERG 240 (250)
T ss_pred HHHHHHHHHHhcCC---CcEEEEEECcH----------------------------hhHHHHHHHHHHCCCEEEEEEEeC
Confidence 788999999999 89888753211 024567889999999999988877
Q ss_pred CceeEEEE
Q 043533 292 GMKSLIEV 299 (301)
Q Consensus 292 ~~~~~i~a 299 (301)
.+..++--
T Consensus 241 ~W~~~~~~ 248 (250)
T PRK00517 241 EWVALVGK 248 (250)
T ss_pred CEEEEEEE
Confidence 76665543
No 57
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.08 E-value=1.4e-11 Score=92.72 Aligned_cols=76 Identities=21% Similarity=0.420 Sum_probs=53.1
Q ss_pred EEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CC---CeEEEeCCCCCC-CC-cchhHHH--------
Q 043533 154 VDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------AD---NLKYIAGDMLRF-IP-PANAFLF-------- 213 (301)
Q Consensus 154 lDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~---ri~~~~~D~~~~-~p-~~D~i~~-------- 213 (301)
||||||+|.++..+++++|..+++++|+ +.+++.+++ .. ++++...|.++. .+ .||+|++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999999999999999999999999 899988876 12 345555555543 33 3999887
Q ss_pred ---HHHHHHHHhcccCCCCcEE
Q 043533 214 ---KILKKRREAIASNGERGKV 232 (301)
Q Consensus 214 ---~iL~~~~~aL~p~~~gg~l 232 (301)
.+|+++++.|+| ||.|
T Consensus 81 ~~~~~l~~~~~~L~p---gG~l 99 (99)
T PF08242_consen 81 DIEAVLRNIYRLLKP---GGIL 99 (99)
T ss_dssp -HHHHHHHHTTT-TS---S-EE
T ss_pred hHHHHHHHHHHHcCC---CCCC
Confidence 999999999999 8865
No 58
>PTZ00146 fibrillarin; Provisional
Probab=99.08 E-value=2.4e-09 Score=95.21 Aligned_cols=132 Identities=9% Similarity=-0.018 Sum_probs=92.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hH----HHhcCCCCCCeEEEeCCCCCCC------CcchhHHH-
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDL-PH----AVANLPEADNLKYIAGDMLRFI------PPANAFLF- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dl-p~----~~~~a~~~~ri~~~~~D~~~~~------p~~D~i~~- 213 (301)
+....+|||+|||+|.++..+++.. |.-+++++|+ +. +++.++...+|.++.+|+..+. +.+|+|++
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 5667899999999999999999986 4568999998 43 5666655678999999986542 22898887
Q ss_pred --------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCcee
Q 043533 214 --------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHY 285 (301)
Q Consensus 214 --------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~ 285 (301)
.++.++++.|+| ||.++|.-....-+.. .+.. ++=.+|. ++|+++||+.+
T Consensus 210 va~pdq~~il~~na~r~LKp---GG~~vI~ika~~id~g----------~~pe--------~~f~~ev-~~L~~~GF~~~ 267 (293)
T PTZ00146 210 VAQPDQARIVALNAQYFLKN---GGHFIISIKANCIDST----------AKPE--------VVFASEV-QKLKKEGLKPK 267 (293)
T ss_pred CCCcchHHHHHHHHHHhccC---CCEEEEEEeccccccC----------CCHH--------HHHHHHH-HHHHHcCCceE
Confidence 455689999999 8988883111110000 0000 0001344 88999999999
Q ss_pred EEEecCC---ceeEEEEe
Q 043533 286 KITPIFG---MKSLIEVY 300 (301)
Q Consensus 286 ~~~~~~~---~~~~i~a~ 300 (301)
+...+.. .+.+|.++
T Consensus 268 e~v~L~Py~~~h~~v~~~ 285 (293)
T PTZ00146 268 EQLTLEPFERDHAVVIGV 285 (293)
T ss_pred EEEecCCccCCcEEEEEE
Confidence 8888742 46666653
No 59
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.07 E-value=1e-09 Score=99.39 Aligned_cols=84 Identities=20% Similarity=0.398 Sum_probs=65.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC--CCc-c---h--h
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRF--IPP-A---N--A 210 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~--~p~-~---D--~ 210 (301)
+...+|||+|||+|..+..|+++.+ ..+++++|+ +++++.+.+ .-+|.++.+|+.+. ++. + + +
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 3457899999999999999999987 689999999 788776653 23467789999863 333 3 2 2
Q ss_pred HHH-------------HHHHHHHHhcccCCCCcEEEE
Q 043533 211 FLF-------------KILKKRREAIASNGERGKVII 234 (301)
Q Consensus 211 i~~-------------~iL~~~~~aL~p~~~gg~l~i 234 (301)
+++ .+|++++++|+| ||.++|
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~p---gG~~li 175 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGP---GGGLLI 175 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 221 899999999999 887765
No 60
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.07 E-value=8.8e-10 Score=96.02 Aligned_cols=135 Identities=16% Similarity=0.071 Sum_probs=89.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-C--CCc-chhHHH----
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR-F--IPP-ANAFLF---- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~-~--~p~-~D~i~~---- 213 (301)
....+|||||||+|.++..+++. ..+++++|+ +.+++.++. ..++++..+|+.+ + .+. ||+|++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 34678999999999999999886 468999999 677766653 3467888888754 2 223 999865
Q ss_pred -------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccc---cCCccCCHHHHHHHHHhCCCc
Q 043533 214 -------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN---ATGKERTESEWAKLFFDAVFS 283 (301)
Q Consensus 214 -------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~---~~g~~rt~~e~~~ll~~aGf~ 283 (301)
.+|+++.+.|+| ||.+++.... ..............+-...... ......+.++|.++++++||+
T Consensus 125 ~~~~~~~~~l~~~~~~L~~---gG~l~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 199 (233)
T PRK05134 125 EHVPDPASFVRACAKLVKP---GGLVFFSTLN--RNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLE 199 (233)
T ss_pred hccCCHHHHHHHHHHHcCC---CcEEEEEecC--CChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCe
Confidence 789999999999 8988766432 1111100000000000001101 113356889999999999999
Q ss_pred eeEEEe
Q 043533 284 HYKITP 289 (301)
Q Consensus 284 ~~~~~~ 289 (301)
++....
T Consensus 200 ~v~~~~ 205 (233)
T PRK05134 200 VQDITG 205 (233)
T ss_pred Eeeeee
Confidence 997754
No 61
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.06 E-value=1.9e-09 Score=96.21 Aligned_cols=122 Identities=16% Similarity=0.297 Sum_probs=90.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC-c-chhHHH----
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFIP-P-ANAFLF---- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~p-~-~D~i~~---- 213 (301)
..+..+|||+|||+|..+..+++..|..+++++|+ +.+++.+++ ..++.++.+|++++.+ . ||+|++
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 34567999999999999999999999999999999 777776664 3689999999987654 3 787653
Q ss_pred ---------------------------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhc
Q 043533 214 ---------------------------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMS 260 (301)
Q Consensus 214 ---------------------------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~ 260 (301)
++++++.+.|+| ||.+++ +. +
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~---gG~l~~-e~-----g----------------- 239 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKP---GGWLLL-EI-----G----------------- 239 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhccc---CCEEEE-EE-----C-----------------
Confidence 577788899999 776665 22 0
Q ss_pred cccCCccCCHHHHHHHHHhCCCceeEEEe-cCCceeEEEEe
Q 043533 261 VNATGKERTESEWAKLFFDAVFSHYKITP-IFGMKSLIEVY 300 (301)
Q Consensus 261 ~~~~g~~rt~~e~~~ll~~aGf~~~~~~~-~~~~~~~i~a~ 300 (301)
....+++++++++.||+.+++.. ..+...++.++
T Consensus 240 ------~~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 240 ------YDQGEAVRALLAAAGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred ------chHHHHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence 01134588899999999777643 34544444444
No 62
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.06 E-value=1.8e-10 Score=102.81 Aligned_cols=85 Identities=16% Similarity=0.275 Sum_probs=72.9
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCC---CeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCCc--chhHHH----HHH
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPG---IKCTVLDL-PHAVANLPE-ADNLKYIAGDMLR-FIPP--ANAFLF----KIL 216 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~---~~~~~~Dl-p~~~~~a~~-~~ri~~~~~D~~~-~~p~--~D~i~~----~iL 216 (301)
...+|||||||+|.++..+++..|. .+++++|+ +.+++.|++ .+++++..+|..+ |++. +|+|+. ..+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~~~~ 164 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYAPCKA 164 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecCCCCH
Confidence 4578999999999999999998875 37899999 889988865 5789999999987 7764 999887 668
Q ss_pred HHHHHhcccCCCCcEEEEEe
Q 043533 217 KKRREAIASNGERGKVIIID 236 (301)
Q Consensus 217 ~~~~~aL~p~~~gg~l~i~e 236 (301)
++++++|+| ||+++++.
T Consensus 165 ~e~~rvLkp---gG~li~~~ 181 (272)
T PRK11088 165 EELARVVKP---GGIVITVT 181 (272)
T ss_pred HHHHhhccC---CCEEEEEe
Confidence 999999999 89998865
No 63
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.06 E-value=4.5e-10 Score=103.16 Aligned_cols=94 Identities=18% Similarity=0.255 Sum_probs=75.8
Q ss_pred HHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCCc-chh
Q 043533 138 VVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLRFIPP-ANA 210 (301)
Q Consensus 138 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~~~p~-~D~ 210 (301)
++ +.++ .....+|||+|||+|.++..+++++|+.+++++|. +.+++.++. .-..+++.+|.+...+. ||+
T Consensus 188 Ll-~~l~--~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDl 264 (342)
T PRK09489 188 LL-STLT--PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDM 264 (342)
T ss_pred HH-Hhcc--ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccE
Confidence 45 5555 23346899999999999999999999999999999 788887764 22356778888775555 898
Q ss_pred HHH----------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 211 FLF----------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 211 i~~----------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
|++ ++++++.+.|+| ||.++|+-.
T Consensus 265 IvsNPPFH~g~~~~~~~~~~~i~~a~~~Lkp---gG~L~iVan 304 (342)
T PRK09489 265 IISNPPFHDGIQTSLDAAQTLIRGAVRHLNS---GGELRIVAN 304 (342)
T ss_pred EEECCCccCCccccHHHHHHHHHHHHHhcCc---CCEEEEEEe
Confidence 885 889999999999 999988764
No 64
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.06 E-value=6.5e-10 Score=94.98 Aligned_cols=90 Identities=11% Similarity=0.136 Sum_probs=72.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCCCCc--chhHHH---------
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIAGDMLRFIPP--ANAFLF--------- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~~D~~~~~p~--~D~i~~--------- 213 (301)
.+...+|||||||+|.++..+++..|+.+++++|+ +++++.|++ .+++++..+|+.++++. ||+|++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence 45567999999999999999999989999999999 899999876 46788999999887654 898876
Q ss_pred ----HHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 043533 214 ----KILKKRREAIASNGERGKVIIIDIVINA 241 (301)
Q Consensus 214 ----~iL~~~~~aL~p~~~gg~l~i~e~~~~~ 241 (301)
++++++++++ ++.++|.|...+.
T Consensus 121 ~~~~~~l~el~r~~-----~~~v~i~e~~~~~ 147 (204)
T TIGR03587 121 DNLPTAYRELYRCS-----NRYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHHhhc-----CcEEEEEEeeCCC
Confidence 5666666654 3678888875443
No 65
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.05 E-value=2.5e-10 Score=98.35 Aligned_cols=131 Identities=18% Similarity=0.142 Sum_probs=94.4
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CC----CeEEEeCCCCCCCCcchhHHH---
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE--------AD----NLKYIAGDMLRFIPPANAFLF--- 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~--------~~----ri~~~~~D~~~~~p~~D~i~~--- 213 (301)
..+|||||||+|.++..|++.. .+++++|. +.+++.|++ .. |+++...|.....+.||+|++
T Consensus 90 g~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 3779999999999999999985 78999999 888888874 22 577777777554555998887
Q ss_pred --------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccc-----cCCccCCHHHHHHHHHhC
Q 043533 214 --------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN-----ATGKERTESEWAKLFFDA 280 (301)
Q Consensus 214 --------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~-----~~g~~rt~~e~~~ll~~a 280 (301)
.+++.+.+.|+| ||+++|......-...... ..+.+...... +..+..+.+|...++.++
T Consensus 168 leHV~dp~~~l~~l~~~lkP---~G~lfittinrt~lS~~~~----i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~ 240 (282)
T KOG1270|consen 168 LEHVKDPQEFLNCLSALLKP---NGRLFITTINRTILSFAGT----IFLAEIVLRIVPKGTHTWEKFINPEELTSILNAN 240 (282)
T ss_pred HHHHhCHHHHHHHHHHHhCC---CCceEeeehhhhHHHhhcc----ccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhc
Confidence 888999999999 8999998763332221110 01111111111 223567899999999999
Q ss_pred CCceeEEEe
Q 043533 281 VFSHYKITP 289 (301)
Q Consensus 281 Gf~~~~~~~ 289 (301)
|+++..+.-
T Consensus 241 ~~~v~~v~G 249 (282)
T KOG1270|consen 241 GAQVNDVVG 249 (282)
T ss_pred Ccchhhhhc
Confidence 999887654
No 66
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.05 E-value=2.1e-09 Score=95.20 Aligned_cols=141 Identities=12% Similarity=0.125 Sum_probs=89.2
Q ss_pred HHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hH------HHhcCCC-CCCeEEEeCCCCCCCC--
Q 043533 137 FVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PH------AVANLPE-ADNLKYIAGDMLRFIP-- 206 (301)
Q Consensus 137 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~------~~~~a~~-~~ri~~~~~D~~~~~p-- 206 (301)
.+. ..++ .+. +++|||||||.|.++..++++.|. .++++|- +. .+.+... ..++.+.+--+ +.+|
T Consensus 106 rl~-p~l~-~L~-gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgv-E~Lp~~ 180 (315)
T PF08003_consen 106 RLL-PHLP-DLK-GKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGV-EDLPNL 180 (315)
T ss_pred HHH-hhhC-CcC-CCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcch-hhcccc
Confidence 344 4443 143 589999999999999999999765 6999996 22 2232222 23344443222 3333
Q ss_pred c-chhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHH
Q 043533 207 P-ANAFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWA 274 (301)
Q Consensus 207 ~-~D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~ 274 (301)
. ||+|++ ..|+++++.|+| ||.+++=..+++.+...--.+. .++-.+. ..--.+|...+.
T Consensus 181 ~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~---gGeLvLETlvi~g~~~~~L~P~-~rYa~m~----nv~FiPs~~~L~ 252 (315)
T PF08003_consen 181 GAFDTVFSMGVLYHRRSPLDHLKQLKDSLRP---GGELVLETLVIDGDENTVLVPE-DRYAKMR----NVWFIPSVAALK 252 (315)
T ss_pred CCcCEEEEeeehhccCCHHHHHHHHHHhhCC---CCEEEEEEeeecCCCceEEccC-CcccCCC----ceEEeCCHHHHH
Confidence 3 999987 999999999999 7766555555554432100000 0101010 001246899999
Q ss_pred HHHHhCCCceeEEEec
Q 043533 275 KLFFDAVFSHYKITPI 290 (301)
Q Consensus 275 ~ll~~aGf~~~~~~~~ 290 (301)
.|++++||+.+++..+
T Consensus 253 ~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 253 NWLERAGFKDVRCVDV 268 (315)
T ss_pred HHHHHcCCceEEEecC
Confidence 9999999999998765
No 67
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.04 E-value=6.2e-11 Score=89.64 Aligned_cols=75 Identities=15% Similarity=0.371 Sum_probs=61.8
Q ss_pred EEEecCCccHHHHHHHHHC---CCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCCc--chhHHH-------
Q 043533 153 LVDVGGGNVSFSRIISEAF---PGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR-FIPP--ANAFLF------- 213 (301)
Q Consensus 153 vlDvGgG~G~~~~~l~~~~---P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~-~~p~--~D~i~~------- 213 (301)
|||+|||+|..+..+++.+ |..+++++|+ +++++.+++ ..+++++.+|+.+ +++. ||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999987 6689999999 899888875 3589999999987 5433 888776
Q ss_pred -------HHHHHHHHhcccCCCCc
Q 043533 214 -------KILKKRREAIASNGERG 230 (301)
Q Consensus 214 -------~iL~~~~~aL~p~~~gg 230 (301)
++|+++.+.|+| ||
T Consensus 81 ~~~~~~~~ll~~~~~~l~p---gG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRP---GG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEE---EE
T ss_pred CCHHHHHHHHHHHHHHhCC---CC
Confidence 999999999999 66
No 68
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=7e-10 Score=98.22 Aligned_cols=96 Identities=16% Similarity=0.264 Sum_probs=79.6
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCCc-
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFIPP- 207 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~p~- 207 (301)
+-++ +.++ .....+|+|+|||.|.+++.+++.+|+.+++.+|. ...++.++. .++..+...|.+++.+.
T Consensus 148 ~lLl-~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~k 224 (300)
T COG2813 148 RLLL-ETLP--PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGK 224 (300)
T ss_pred HHHH-HhCC--ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccccc
Confidence 4466 7777 44455999999999999999999999999999999 677777775 23335667788887766
Q ss_pred chhHHH----------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 208 ANAFLF----------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 208 ~D~i~~----------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
||+|++ ++++++.++|++ ||.|.|+-.
T Consensus 225 fd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~---gGeL~iVan 267 (300)
T COG2813 225 FDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKP---GGELWIVAN 267 (300)
T ss_pred ccEEEeCCCccCCcchhHHHHHHHHHHHHHhhcc---CCEEEEEEc
Confidence 999998 899999999999 999988876
No 69
>PLN03075 nicotianamine synthase; Provisional
Probab=99.03 E-value=5.4e-10 Score=99.67 Aligned_cols=125 Identities=11% Similarity=0.151 Sum_probs=86.3
Q ss_pred cCCCeEEEecCCccHH-HHH-HHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCCCC---CcchhHHH
Q 043533 148 EGLGSLVDVGGGNVSF-SRI-ISEAFPGIKCTVLDL-PHAVANLPE--------ADNLKYIAGDMLRFI---PPANAFLF 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~-~~~-l~~~~P~~~~~~~Dl-p~~~~~a~~--------~~ri~~~~~D~~~~~---p~~D~i~~ 213 (301)
.++++|+|||||.|-+ ++. +++.+|+.+++++|. +++++.|++ .+|++|..+|..+.. ..||+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 3679999999997744 333 335689999999999 888887764 478999999998732 23999887
Q ss_pred ------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCC
Q 043533 214 ------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAV 281 (301)
Q Consensus 214 ------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aG 281 (301)
++|++++++|+| ||.+++ -.. .+. ..++.- .-..++.+ |
T Consensus 202 ~ALi~~dk~~k~~vL~~l~~~LkP---GG~Lvl-r~~---~G~-------r~~LYp---------~v~~~~~~------g 252 (296)
T PLN03075 202 AALVGMDKEEKVKVIEHLGKHMAP---GALLML-RSA---HGA-------RAFLYP---------VVDPCDLR------G 252 (296)
T ss_pred ecccccccccHHHHHHHHHHhcCC---CcEEEE-ecc---cch-------HhhcCC---------CCChhhCC------C
Confidence 899999999999 775554 331 111 111111 11222222 9
Q ss_pred CceeEEEec-C-CceeEEEEeC
Q 043533 282 FSHYKITPI-F-GMKSLIEVYP 301 (301)
Q Consensus 282 f~~~~~~~~-~-~~~~~i~a~~ 301 (301)
|+...+.+- + ..+++|.+|+
T Consensus 253 f~~~~~~~P~~~v~Nsvi~~r~ 274 (296)
T PLN03075 253 FEVLSVFHPTDEVINSVIIARK 274 (296)
T ss_pred eEEEEEECCCCCceeeEEEEEe
Confidence 998877654 3 3689998875
No 70
>PRK04457 spermidine synthase; Provisional
Probab=99.03 E-value=2.9e-10 Score=100.82 Aligned_cols=85 Identities=18% Similarity=0.339 Sum_probs=72.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC---CCCc-chhHHH--
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR---FIPP-ANAFLF-- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~---~~p~-~D~i~~-- 213 (301)
+.+++|||||||+|.++..+++.+|+.+++++|+ |++++.|++ .+|++++.+|+.+ ..+. ||+|++
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 4568999999999999999999999999999999 999988764 3789999999854 2344 888875
Q ss_pred -------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 214 -------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 214 -------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
.+++++++.|+| ||.+++.
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~p---gGvlvin 176 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSS---DGIFVVN 176 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCC---CcEEEEE
Confidence 889999999999 8877764
No 71
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.03 E-value=2e-09 Score=93.38 Aligned_cols=132 Identities=14% Similarity=0.120 Sum_probs=84.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCcchhHHH------
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIPPANAFLF------ 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p~~D~i~~------ 213 (301)
.+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++ .+++.+..+|+......||+|++
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 4467999999999999999998754 5999999 888887764 25899999995323233887754
Q ss_pred -------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhh-c-cccCCccCCHHHHHHHHHhCCCce
Q 043533 214 -------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVM-S-VNATGKERTESEWAKLFFDAVFSH 284 (301)
Q Consensus 214 -------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~g~~rt~~e~~~ll~~aGf~~ 284 (301)
.+++++.+.+++ +.++.+. +...... .......... . ........+..+|.++++++||++
T Consensus 140 ~~~~~~~~~l~~l~~~~~~----~~~i~~~---~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 209 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRG----SLIFTFA---PYTPLLA---LLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKV 209 (230)
T ss_pred CCHHHHHHHHHHHHhhcCC----eEEEEEC---CccHHHH---HHHHhccccCCccCCCCccccCHHHHHHHHHHCCCce
Confidence 667777765543 4443321 1111100 0000000000 0 001223468899999999999999
Q ss_pred eEEEecC
Q 043533 285 YKITPIF 291 (301)
Q Consensus 285 ~~~~~~~ 291 (301)
.++....
T Consensus 210 ~~~~~~~ 216 (230)
T PRK07580 210 VRTERIS 216 (230)
T ss_pred Eeeeecc
Confidence 9998764
No 72
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.02 E-value=7.9e-10 Score=94.60 Aligned_cols=94 Identities=15% Similarity=0.151 Sum_probs=74.3
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIP 206 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p 206 (301)
..++ +.++ .....+|||||||+|..+..+++..+ ..+++++|. +++++.+++ .++++++.+|+.+.++
T Consensus 62 ~~~~-~~l~--~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~ 138 (205)
T PRK13944 62 AMMC-ELIE--PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE 138 (205)
T ss_pred HHHH-HhcC--CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc
Confidence 3345 5554 55668999999999999999998764 568999999 888877664 2469999999987443
Q ss_pred ---cchhHHH-----HHHHHHHHhcccCCCCcEEEEE
Q 043533 207 ---PANAFLF-----KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 207 ---~~D~i~~-----~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
.||+|++ .+.+++.+.|+| ||++++.
T Consensus 139 ~~~~fD~Ii~~~~~~~~~~~l~~~L~~---gG~lvi~ 172 (205)
T PRK13944 139 KHAPFDAIIVTAAASTIPSALVRQLKD---GGVLVIP 172 (205)
T ss_pred cCCCccEEEEccCcchhhHHHHHhcCc---CcEEEEE
Confidence 2999887 777899999999 8988764
No 73
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.02 E-value=3.3e-10 Score=96.73 Aligned_cols=85 Identities=16% Similarity=0.281 Sum_probs=71.0
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCC-CC-C--CCc--chhHHH--
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDM-LR-F--IPP--ANAFLF-- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~-~~-~--~p~--~D~i~~-- 213 (301)
...+|||||||+|.++..+++.+|+.+++++|. +++++.+++ .++++++.+|+ .. + ++. +|+|++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 568999999999999999999999999999999 888887764 36799999998 33 3 433 777654
Q ss_pred -----------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 -----------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 -----------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
.+|++++++|+| ||.+++..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~~ 156 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKP---GGEIHFAT 156 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCC---CCEEEEEc
Confidence 479999999999 89888764
No 74
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.02 E-value=3.5e-09 Score=92.90 Aligned_cols=205 Identities=14% Similarity=0.163 Sum_probs=122.2
Q ss_pred cchhhHHHHHhhhcCCCCchhHHhhCCChhHHhhcCc-hHHHHHHHHhhccc-----------c-cchHHHHHhhhhh--
Q 043533 81 FFVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNP-AINQRFNEAMASDS-----------E-IMTSFVVKSECKQ-- 145 (301)
Q Consensus 81 ~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~e~~~~~~-~~~~~f~~am~~~~-----------~-~~~~~~~~~~~~~-- 145 (301)
..+.....+.+.++-|-.++|+. |.++ +|.++|. .-.-.+.+.|...- + .....+++..+..
T Consensus 55 ~~m~~~g~lS~Gi~lG~~tGFDS--GstL-DYVYrN~p~G~~~~GrliDr~yLnaiGWrGIR~Rk~~l~~~i~~ai~~L~ 131 (311)
T PF12147_consen 55 ASMRTGGRLSEGIRLGLETGFDS--GSTL-DYVYRNQPQGKGPLGRLIDRNYLNAIGWRGIRQRKVHLEELIRQAIARLR 131 (311)
T ss_pred HHHHhccccccceeechhcCCCC--cchH-hHHhcCCCCCcchHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777777766566653 4443 6666653 22223333333210 0 0112222122221
Q ss_pred cccCCCeEEEecCCccHHHHHHHHHCCC--CeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC--C----Ccch
Q 043533 146 IFEGLGSLVDVGGGNVSFSRIISEAFPG--IKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRF--I----PPAN 209 (301)
Q Consensus 146 ~~~~~~~vlDvGgG~G~~~~~l~~~~P~--~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~--~----p~~D 209 (301)
.-..+.+||||.||+|.+....+..+|. .++.+.|. |.-++..++ .+-++|..+|+|+. + |.++
T Consensus 132 ~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~ 211 (311)
T PF12147_consen 132 EQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPT 211 (311)
T ss_pred hcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCC
Confidence 1235679999999999999999999998 78999999 666665553 34459999999973 2 2345
Q ss_pred hHHH--------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCC-----ccCCH
Q 043533 210 AFLF--------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATG-----KERTE 270 (301)
Q Consensus 210 ~i~~--------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g-----~~rt~ 270 (301)
++++ +.|+-+++++.| ||.++..-.-..+... + ....+..+.+| +-||+
T Consensus 212 l~iVsGL~ElF~Dn~lv~~sl~gl~~al~p---gG~lIyTgQPwHPQle------~---IAr~LtsHr~g~~WvMRrRsq 279 (311)
T PF12147_consen 212 LAIVSGLYELFPDNDLVRRSLAGLARALEP---GGYLIYTGQPWHPQLE------M---IARVLTSHRDGKAWVMRRRSQ 279 (311)
T ss_pred EEEEecchhhCCcHHHHHHHHHHHHHHhCC---CcEEEEcCCCCCcchH------H---HHHHHhcccCCCceEEEecCH
Confidence 5544 678889999999 7866654432221111 0 01111111122 35899
Q ss_pred HHHHHHHHhCCCceeEE-EecCCceeEEEEe
Q 043533 271 SEWAKLFFDAVFSHYKI-TPIFGMKSLIEVY 300 (301)
Q Consensus 271 ~e~~~ll~~aGf~~~~~-~~~~~~~~~i~a~ 300 (301)
.|+.+|+++|||+.+.. +.-+|-+.+-.|+
T Consensus 280 ~EmD~Lv~~aGF~K~~q~ID~~GIFTVSlA~ 310 (311)
T PF12147_consen 280 AEMDQLVEAAGFEKIDQRIDEWGIFTVSLAR 310 (311)
T ss_pred HHHHHHHHHcCCchhhheeccCCceEEEeec
Confidence 99999999999997754 3445656666555
No 75
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.02 E-value=7.7e-10 Score=95.14 Aligned_cols=94 Identities=17% Similarity=0.235 Sum_probs=76.4
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCC-C
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFI-P 206 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~-p 206 (301)
..++ +.++ +....+|||||||+|.++..+++.. ++.+++++|. +++++.+++ .++++++.+|..+.. +
T Consensus 66 ~~~~-~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~ 142 (212)
T PRK13942 66 AIMC-ELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEE 142 (212)
T ss_pred HHHH-HHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCc
Confidence 4455 5555 6778899999999999999999875 4579999999 888887764 357999999998733 2
Q ss_pred --cchhHHH-----HHHHHHHHhcccCCCCcEEEEE
Q 043533 207 --PANAFLF-----KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 207 --~~D~i~~-----~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
.||+|++ .+.+.+.+.|+| ||++++.
T Consensus 143 ~~~fD~I~~~~~~~~~~~~l~~~Lkp---gG~lvi~ 175 (212)
T PRK13942 143 NAPYDRIYVTAAGPDIPKPLIEQLKD---GGIMVIP 175 (212)
T ss_pred CCCcCEEEECCCcccchHHHHHhhCC---CcEEEEE
Confidence 2999887 778888999999 8988775
No 76
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.01 E-value=1.6e-09 Score=93.76 Aligned_cols=131 Identities=11% Similarity=0.027 Sum_probs=89.5
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CC-CeEEEeCCCCC-CC--Cc-chhHHH----
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----AD-NLKYIAGDMLR-FI--PP-ANAFLF---- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~-ri~~~~~D~~~-~~--p~-~D~i~~---- 213 (301)
...+|||+|||+|.++..+++..+ +++++|+ +.+++.++. .. ++++..+|+.+ +. +. +|+|++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 367999999999999999988754 5999999 777776654 22 68888888765 32 23 898865
Q ss_pred -------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhcc----c---cCCccCCHHHHHHHHHh
Q 043533 214 -------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSV----N---ATGKERTESEWAKLFFD 279 (301)
Q Consensus 214 -------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~----~---~~g~~rt~~e~~~ll~~ 279 (301)
.+|+++++.|+| ||.+++.....+. .. . ........+.. . ......+..++.+++++
T Consensus 123 ~~~~~~~~~l~~~~~~L~~---gG~l~i~~~~~~~--~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 193 (224)
T TIGR01983 123 EHVPDPQAFIRACAQLLKP---GGILFFSTINRTP--KS--Y--LLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLES 193 (224)
T ss_pred HhCCCHHHHHHHHHHhcCC---CcEEEEEecCCCc--hH--H--HHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHH
Confidence 899999999999 8988776542111 00 0 00111111110 0 11234578999999999
Q ss_pred CCCceeEEEec
Q 043533 280 AVFSHYKITPI 290 (301)
Q Consensus 280 aGf~~~~~~~~ 290 (301)
+||+++++...
T Consensus 194 ~G~~i~~~~~~ 204 (224)
T TIGR01983 194 AGLRVKDVKGL 204 (224)
T ss_pred cCCeeeeeeeE
Confidence 99999987643
No 77
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.01 E-value=6.2e-10 Score=99.88 Aligned_cols=65 Identities=20% Similarity=0.343 Sum_probs=55.5
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCc--chhHHH
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIPP--ANAFLF 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p~--~D~i~~ 213 (301)
+..+|||+|||+|.++..+++++|+.+++++|+ +.+++.|++ .++|+++.+|++++++. +|+|++
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~ 195 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVS 195 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEE
Confidence 457899999999999999999999999999999 888887774 36899999999876553 787764
No 78
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.00 E-value=4.8e-09 Score=97.59 Aligned_cols=67 Identities=15% Similarity=0.278 Sum_probs=56.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCC-CC--c-chhHHH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLRF-IP--P-ANAFLF 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~~-~p--~-~D~i~~ 213 (301)
++...+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++ ..+++++.+|++++ .| . +|+|++
T Consensus 249 l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVS 325 (423)
T PRK14966 249 LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVS 325 (423)
T ss_pred cCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEE
Confidence 34456999999999999999999999999999999 899988775 45899999999763 33 2 888887
No 79
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.00 E-value=8.6e-10 Score=95.05 Aligned_cols=94 Identities=14% Similarity=0.193 Sum_probs=76.4
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC-
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFIP- 206 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~p- 206 (301)
..++ +.++ .....+|||||||+|.++..+++..+ +.+++++|. +++++.|++ .++++++.+|..+..+
T Consensus 67 ~~~~-~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~ 143 (215)
T TIGR00080 67 AMMT-ELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP 143 (215)
T ss_pred HHHH-HHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc
Confidence 3455 5555 67778999999999999999999864 578999998 888887764 3679999999976332
Q ss_pred --cchhHHH-----HHHHHHHHhcccCCCCcEEEEE
Q 043533 207 --PANAFLF-----KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 207 --~~D~i~~-----~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
.||+|++ .+.+.+.+.|+| ||++++.
T Consensus 144 ~~~fD~Ii~~~~~~~~~~~~~~~L~~---gG~lv~~ 176 (215)
T TIGR00080 144 LAPYDRIYVTAAGPKIPEALIDQLKE---GGILVMP 176 (215)
T ss_pred cCCCCEEEEcCCcccccHHHHHhcCc---CcEEEEE
Confidence 3999887 788899999999 8988764
No 80
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.00 E-value=4.4e-10 Score=95.33 Aligned_cols=85 Identities=15% Similarity=0.247 Sum_probs=70.3
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C---CCc--chhHHH--
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-F---IPP--ANAFLF-- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~---~p~--~D~i~~-- 213 (301)
...++||||||+|.++..+++++|+.+++++|+ +.+++.+.+ -.+|+++.+|+.+ + ++. +|.+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 457999999999999999999999999999999 778777653 3589999999864 2 332 676664
Q ss_pred -----------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 -----------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 -----------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
.++++++++|+| ||.+++..
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~Lkp---gG~l~~~t 132 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKK---GGVIHFKT 132 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCC---CCEEEEEe
Confidence 489999999999 89887654
No 81
>PRK14968 putative methyltransferase; Provisional
Probab=98.99 E-value=6.7e-09 Score=87.07 Aligned_cols=110 Identities=17% Similarity=0.266 Sum_probs=84.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCC-eEEEeCCCCCCCCc--chhHHH---
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADN-LKYIAGDMLRFIPP--ANAFLF--- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~r-i~~~~~D~~~~~p~--~D~i~~--- 213 (301)
.+..+|||+|||+|.++..+++. +.+++++|. +++++.+++ .++ +.++.+|+.+++++ +|+|++
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 45679999999999999999988 678999999 888877753 223 88999998875543 777642
Q ss_pred -----------------------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccC
Q 043533 214 -----------------------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNAT 264 (301)
Q Consensus 214 -----------------------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 264 (301)
.+++++.++|+| ||.++++.. .
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~---gG~~~~~~~---~----------------------- 150 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKP---GGRILLLQS---S----------------------- 150 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCC---CeEEEEEEc---c-----------------------
Confidence 579999999999 887776531 0
Q ss_pred CccCCHHHHHHHHHhCCCceeEEEec
Q 043533 265 GKERTESEWAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 265 g~~rt~~e~~~ll~~aGf~~~~~~~~ 290 (301)
....+++.++++++||++..+...
T Consensus 151 --~~~~~~l~~~~~~~g~~~~~~~~~ 174 (188)
T PRK14968 151 --LTGEDEVLEYLEKLGFEAEVVAEE 174 (188)
T ss_pred --cCCHHHHHHHHHHCCCeeeeeeec
Confidence 012356788999999998877654
No 82
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.99 E-value=2.7e-09 Score=96.79 Aligned_cols=137 Identities=14% Similarity=0.084 Sum_probs=84.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCCCCCc-chhHHH--
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----------ADNLKYIAGDMLRFIPP-ANAFLF-- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----------~~ri~~~~~D~~~~~p~-~D~i~~-- 213 (301)
...+|||||||+|.++..++++ +.+++++|+ +.+++.+++ ..+++|..+|+.. ++. ||+|++
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~-l~~~fD~Vv~~~ 220 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES-LSGKYDTVTCLD 220 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh-cCCCcCEEEEcC
Confidence 3579999999999999999986 578999999 888877764 1357888888753 333 898775
Q ss_pred -----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccc----cCCccCCHHHHHHHHH
Q 043533 214 -----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN----ATGKERTESEWAKLFF 278 (301)
Q Consensus 214 -----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~----~~g~~rt~~e~~~ll~ 278 (301)
.+++.+.+ +.+ |+++|.. .+...... .....-. .+.. ......+.++++++|+
T Consensus 221 vL~H~p~~~~~~ll~~l~~-l~~----g~liIs~--~p~~~~~~---~l~~~g~--~~~g~~~~~r~y~~s~eel~~lL~ 288 (315)
T PLN02585 221 VLIHYPQDKADGMIAHLAS-LAE----KRLIISF--APKTLYYD---ILKRIGE--LFPGPSKATRAYLHAEADVERALK 288 (315)
T ss_pred EEEecCHHHHHHHHHHHHh-hcC----CEEEEEe--CCcchHHH---HHHHHHh--hcCCCCcCceeeeCCHHHHHHHHH
Confidence 35555553 344 5555532 12111100 0000000 0100 0112348999999999
Q ss_pred hCCCceeEEEecCC---ceeEEEEe
Q 043533 279 DAVFSHYKITPIFG---MKSLIEVY 300 (301)
Q Consensus 279 ~aGf~~~~~~~~~~---~~~~i~a~ 300 (301)
++||++....-... +-.++||+
T Consensus 289 ~AGf~v~~~~~~~~~~y~~~l~~~~ 313 (315)
T PLN02585 289 KAGWKVARREMTATQFYFSRLLEAV 313 (315)
T ss_pred HCCCEEEEEEEeecceeHHhhhhhc
Confidence 99999887654432 23555554
No 83
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.99 E-value=8.9e-10 Score=93.55 Aligned_cols=94 Identities=15% Similarity=0.244 Sum_probs=74.7
Q ss_pred HHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC---CCC-
Q 043533 138 VVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR---FIP- 206 (301)
Q Consensus 138 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~---~~p- 206 (301)
++ +.++ .....+|||+|||+|.++..+++..|+.+++++|+ |++++.+++ .++++++.+|+.+ .+.
T Consensus 32 l~-~~l~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~ 108 (196)
T PRK07402 32 LI-SQLR--LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAP 108 (196)
T ss_pred HH-HhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCC
Confidence 44 5555 56678999999999999999999999999999999 888887764 3579999999854 222
Q ss_pred cchhHHH-------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 207 PANAFLF-------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 207 ~~D~i~~-------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
.+|.+++ .+++++++.|+| ||++++...
T Consensus 109 ~~d~v~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~ 143 (196)
T PRK07402 109 APDRVCIEGGRPIKEILQAVWQYLKP---GGRLVATAS 143 (196)
T ss_pred CCCEEEEECCcCHHHHHHHHHHhcCC---CeEEEEEee
Confidence 2455433 899999999999 898887764
No 84
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.98 E-value=2.7e-09 Score=90.45 Aligned_cols=133 Identities=11% Similarity=0.079 Sum_probs=84.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC---CCCc--chhHHH--------
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLR---FIPP--ANAFLF-------- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~---~~p~--~D~i~~-------- 213 (301)
+...+|||||||+|.++..+++. ...+++++|+ +++++.++. .+++++.+|+.+ +++. ||+|++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~ 89 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR 89 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc
Confidence 44579999999999999988866 3668899999 788877753 468888899865 2443 898887
Q ss_pred ---HHHHHHHHhcccCCCCcEEEEEeeeeCCCccch-hhhhh-h-hh-----hchhhccccCCccCCHHHHHHHHHhCCC
Q 043533 214 ---KILKKRREAIASNGERGKVIIIDIVINAEEEEH-ELTET-K-FL-----FDIVMSVNATGKERTESEWAKLFFDAVF 282 (301)
Q Consensus 214 ---~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~-~~~~~-~-~~-----~d~~~~~~~~g~~rt~~e~~~ll~~aGf 282 (301)
++|+++.+.+++ +++. . +.-.... ..... . .. +.....-....+..+.+++.++++++||
T Consensus 90 d~~~~l~e~~r~~~~------~ii~-~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf 160 (194)
T TIGR02081 90 NPEEILDEMLRVGRH------AIVS-F--PNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNL 160 (194)
T ss_pred CHHHHHHHHHHhCCe------EEEE-c--CChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCC
Confidence 677777665443 3222 1 1111000 00000 0 00 0000000012346799999999999999
Q ss_pred ceeEEEecC
Q 043533 283 SHYKITPIF 291 (301)
Q Consensus 283 ~~~~~~~~~ 291 (301)
++++....+
T Consensus 161 ~v~~~~~~~ 169 (194)
T TIGR02081 161 RILDRAAFD 169 (194)
T ss_pred EEEEEEEec
Confidence 999877663
No 85
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.98 E-value=4e-10 Score=96.35 Aligned_cols=135 Identities=11% Similarity=0.049 Sum_probs=91.7
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCC--eEEEeCCCCC-CC--CcchhHHH------
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE---ADN--LKYIAGDMLR-FI--PPANAFLF------ 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~---~~r--i~~~~~D~~~-~~--p~~D~i~~------ 213 (301)
...+|||||||.|.++..+++.. .+++++|+ ++.++.|+. .+. |++.+....+ .. ..||+|++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 35899999999999999999996 89999999 888888874 233 3355555444 22 24999988
Q ss_pred -----HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccc---cCCccCCHHHHHHHHHhCCCcee
Q 043533 214 -----KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN---ATGKERTESEWAKLFFDAVFSHY 285 (301)
Q Consensus 214 -----~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~---~~g~~rt~~e~~~ll~~aGf~~~ 285 (301)
.+++++.+.+|| ||.+++..........- .......+=+.++.. .-.+...++|+..++.++|++..
T Consensus 137 v~dp~~~~~~c~~lvkP---~G~lf~STinrt~ka~~--~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~ 211 (243)
T COG2227 137 VPDPESFLRACAKLVKP---GGILFLSTINRTLKAYL--LAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKII 211 (243)
T ss_pred cCCHHHHHHHHHHHcCC---CcEEEEeccccCHHHHH--HHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEE
Confidence 899999999999 88777666542221110 000000000111111 12345688999999999999998
Q ss_pred EEEec
Q 043533 286 KITPI 290 (301)
Q Consensus 286 ~~~~~ 290 (301)
....+
T Consensus 212 ~~~g~ 216 (243)
T COG2227 212 DRKGL 216 (243)
T ss_pred eecce
Confidence 87654
No 86
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=5.1e-09 Score=93.63 Aligned_cols=62 Identities=16% Similarity=0.299 Sum_probs=54.8
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----C-CCeEEEeCCCCCCCCc-chhHHH
Q 043533 152 SLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----A-DNLKYIAGDMLRFIPP-ANAFLF 213 (301)
Q Consensus 152 ~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~-~ri~~~~~D~~~~~p~-~D~i~~ 213 (301)
+|||||||+|..++.+++++|+++++++|+ |.+++.|+. + .|+.++.+|+|++++. ||+|++
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVs 182 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVS 182 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEe
Confidence 799999999999999999999999999999 888888875 2 5677777899988775 898887
No 87
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.96 E-value=9.2e-10 Score=99.78 Aligned_cols=83 Identities=19% Similarity=0.403 Sum_probs=68.6
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCc--chhHHH-------
Q 043533 151 GSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIPP--ANAFLF------- 213 (301)
Q Consensus 151 ~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p~--~D~i~~------- 213 (301)
.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++ .++|+++.+|+++.+|. +|+|++
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999999 888887764 35799999999875543 787763
Q ss_pred -----------------------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 214 -----------------------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 -----------------------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
.+++++.+.|+| ||+++ +|.
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~p---gG~l~-~E~ 263 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTE---DGVLV-VEV 263 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCC---CCEEE-EEE
Confidence 567888888998 77554 453
No 88
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.94 E-value=2.4e-09 Score=89.09 Aligned_cols=137 Identities=18% Similarity=0.171 Sum_probs=94.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeE-EEeCCCCC-C-CCc--chhHHH--
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLK-YIAGDMLR-F-IPP--ANAFLF-- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~-~~~~D~~~-~-~p~--~D~i~~-- 213 (301)
++...||+||||||..-.- ...-|..+++.+|- |.|.+.+.+ ...+. |+.++..+ + +++ +|.|+.
T Consensus 75 ~~K~~vLEvgcGtG~Nfkf-y~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKF-YPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTL 153 (252)
T ss_pred cCccceEEecccCCCCccc-ccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEE
Confidence 4456789999999986432 22336789999998 666665543 56677 88888866 4 454 898876
Q ss_pred ---------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCce
Q 043533 214 ---------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSH 284 (301)
Q Consensus 214 ---------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~ 284 (301)
+.|+++++.|+| ||+++++|+...+.+.-+.+ .+...+-.......|--.|.+ .-+.|++|-|+.
T Consensus 154 vLCSve~~~k~L~e~~rlLRp---gG~iifiEHva~~y~~~n~i--~q~v~ep~~~~~~dGC~ltrd-~~e~Leda~f~~ 227 (252)
T KOG4300|consen 154 VLCSVEDPVKQLNEVRRLLRP---GGRIIFIEHVAGEYGFWNRI--LQQVAEPLWHLESDGCVLTRD-TGELLEDAEFSI 227 (252)
T ss_pred EEeccCCHHHHHHHHHHhcCC---CcEEEEEecccccchHHHHH--HHHHhchhhheeccceEEehh-HHHHhhhccccc
Confidence 999999999999 99999999987766543211 122233221222445444543 456788999998
Q ss_pred eEEEecC
Q 043533 285 YKITPIF 291 (301)
Q Consensus 285 ~~~~~~~ 291 (301)
.+.....
T Consensus 228 ~~~kr~~ 234 (252)
T KOG4300|consen 228 DSCKRFN 234 (252)
T ss_pred chhhccc
Confidence 8776654
No 89
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.93 E-value=2.2e-09 Score=96.39 Aligned_cols=63 Identities=17% Similarity=0.392 Sum_probs=54.2
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCc--chhHHH
Q 043533 151 GSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIPP--ANAFLF 213 (301)
Q Consensus 151 ~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p~--~D~i~~ 213 (301)
.+|||+|||+|.++..++..+|+.+++++|+ +.+++.+++ .++++++.+|++++++. +|+|++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvs 188 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVS 188 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEE
Confidence 6899999999999999999999999999999 888887774 35699999999886653 787664
No 90
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.91 E-value=4.3e-09 Score=97.24 Aligned_cols=144 Identities=11% Similarity=0.077 Sum_probs=93.3
Q ss_pred HHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC---CCC
Q 043533 137 FVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR---FIP 206 (301)
Q Consensus 137 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~---~~p 206 (301)
.++ +.+. ......+||||||+|.++..+++++|+..++++|+ +.++..+.+ -++|.++.+|+.. .+|
T Consensus 113 ~~~-~~~~--~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~ 189 (390)
T PRK14121 113 NFL-DFIS--KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLP 189 (390)
T ss_pred HHH-HHhc--CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCC
Confidence 345 5554 34467999999999999999999999999999999 777666643 4679999999743 355
Q ss_pred c--chhHHH-----------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCcc
Q 043533 207 P--ANAFLF-----------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKE 267 (301)
Q Consensus 207 ~--~D~i~~-----------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~ 267 (301)
+ +|.|++ .+|+.++++|+| ||.+.+..-..+--... ...+............+...
T Consensus 190 ~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkp---GG~l~l~TD~~~y~~~~--~e~~~~~~~~~~~~~~~~~~ 264 (390)
T PRK14121 190 SNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKP---GGTLELRTDSELYFEFS--LELFLKLPKAKIEIKKNAQL 264 (390)
T ss_pred CCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCC---CcEEEEEEECHHHHHHH--HHHHHhCCCceeecccCCCC
Confidence 3 676665 589999999999 89887755322110000 00000000111111111222
Q ss_pred CCHHHHHHHHHhCCCceeEEE
Q 043533 268 RTESEWAKLFFDAVFSHYKIT 288 (301)
Q Consensus 268 rt~~e~~~ll~~aGf~~~~~~ 288 (301)
+...+|++-..+.|-.+..+.
T Consensus 265 ~i~TkyE~r~~~~G~~Iy~l~ 285 (390)
T PRK14121 265 EVSSKYEDRWKKQNKDIYDLR 285 (390)
T ss_pred CCCCHHHHHHHHCCCCEEEEE
Confidence 345688888888998776653
No 91
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.91 E-value=1.3e-09 Score=94.51 Aligned_cols=87 Identities=11% Similarity=0.303 Sum_probs=74.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC---CCC--cchhHHH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR---FIP--PANAFLF 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~---~~p--~~D~i~~ 213 (301)
.+..++|||+|||.|..+..++++.++++++++|+ +++.+.|++ .+||+++.+|+.+ ..+ .||+|++
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 55589999999999999999999999999999999 777777764 6899999999865 122 2899988
Q ss_pred -----------------------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 -----------------------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 -----------------------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
.+++.+.+.|+| ||++.++-
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~---~G~l~~V~ 170 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKP---GGRLAFVH 170 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccC---CCEEEEEe
Confidence 889999999999 89888765
No 92
>PHA03411 putative methyltransferase; Provisional
Probab=98.89 E-value=7.3e-09 Score=91.22 Aligned_cols=64 Identities=16% Similarity=0.199 Sum_probs=54.5
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCC-CCc-chhHHH
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIAGDMLRF-IPP-ANAFLF 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~~D~~~~-~p~-~D~i~~ 213 (301)
..+|||+|||+|.++..++++.+..+++++|+ |.+++.+++ .++++++.+|+++. .+. +|+|++
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIs 132 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVIS 132 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEE
Confidence 46999999999999999999888889999999 889888775 46799999999873 333 888887
No 93
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.89 E-value=9e-10 Score=85.22 Aligned_cols=82 Identities=21% Similarity=0.316 Sum_probs=70.0
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-C--CCc--chhHHH----
Q 043533 151 GSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-F--IPP--ANAFLF---- 213 (301)
Q Consensus 151 ~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~--~p~--~D~i~~---- 213 (301)
.+|||+|||+|.++..+++.. ..+++++|+ |..++.++. .+|++++.+|+++ . .+. +|+|++
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 589999999999999999998 889999999 888776663 4789999999876 3 443 898887
Q ss_pred ---------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 ---------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 ---------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
.+++++.+.|+| ||.++++-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~---gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKP---GGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCC---CeEEEEEe
Confidence 789999999999 88877653
No 94
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.87 E-value=4.1e-09 Score=88.50 Aligned_cols=95 Identities=19% Similarity=0.310 Sum_probs=70.2
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC-CCCc-
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR-FIPP- 207 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~-~~p~- 207 (301)
+.++ +.++ .-+..++||||||.|..+.-|+++ +..++++|. +..++.+.+ .-.|+....|+.+ .++.
T Consensus 20 s~v~-~a~~--~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~ 94 (192)
T PF03848_consen 20 SEVL-EAVP--LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEE 94 (192)
T ss_dssp HHHH-HHCT--TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTT
T ss_pred HHHH-HHHh--hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCC
Confidence 4466 6666 556789999999999999999999 678999999 656655442 3448889999977 6665
Q ss_pred chhHHH-------------HHHHHHHHhcccCCCCcEEEEEeee
Q 043533 208 ANAFLF-------------KILKKRREAIASNGERGKVIIIDIV 238 (301)
Q Consensus 208 ~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~ 238 (301)
||+|++ ++++++.++++| ||.+++...+
T Consensus 95 yD~I~st~v~~fL~~~~~~~i~~~m~~~~~p---GG~~li~~~~ 135 (192)
T PF03848_consen 95 YDFIVSTVVFMFLQRELRPQIIENMKAATKP---GGYNLIVTFM 135 (192)
T ss_dssp EEEEEEESSGGGS-GGGHHHHHHHHHHTEEE---EEEEEEEEEB
T ss_pred cCEEEEEEEeccCCHHHHHHHHHHHHhhcCC---cEEEEEEEec
Confidence 998753 799999999999 7876765553
No 95
>PRK14967 putative methyltransferase; Provisional
Probab=98.86 E-value=1.1e-08 Score=88.74 Aligned_cols=89 Identities=13% Similarity=0.165 Sum_probs=69.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCCc--chhHHH-----
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLRFIPP--ANAFLF----- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~~~p~--~D~i~~----- 213 (301)
..+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++ ..+++++.+|+.+.++. ||+|++
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 4556799999999999999998763 458999999 788876654 34688899998764442 787764
Q ss_pred ---------------------------HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 214 ---------------------------KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 214 ---------------------------~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
.+++++++.|+| ||+++++....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~---gG~l~~~~~~~ 162 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAP---GGSLLLVQSEL 162 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCC---CcEEEEEEecc
Confidence 377889999999 89988765433
No 96
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.84 E-value=3.8e-09 Score=101.99 Aligned_cols=84 Identities=15% Similarity=0.303 Sum_probs=69.0
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCc--chhHHH------
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIPP--ANAFLF------ 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p~--~D~i~~------ 213 (301)
..+|||||||+|.+++.+++.+|+.+++++|+ +.+++.|++ .++++++.+|++++++. ||+|++
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 46899999999999999999999999999999 888887774 36899999998775432 666664
Q ss_pred -------------------------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 214 -------------------------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 -------------------------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
++++++.+.|+| ||.++ +|.
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~---gG~l~-lEi 269 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKP---NGKII-LEI 269 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccC---CCEEE-EEE
Confidence 678888999999 77664 453
No 97
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.82 E-value=4.5e-08 Score=82.26 Aligned_cols=166 Identities=13% Similarity=0.164 Sum_probs=99.5
Q ss_pred hHHHHHhhhcCCCCchhHHhhCCChhHHhhcCchH----HHHHHHHhhcccccchHHHHHhhhhhcccCCCeEEEecCCc
Q 043533 85 PFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAI----NQRFNEAMASDSEIMTSFVVKSECKQIFEGLGSLVDVGGGN 160 (301)
Q Consensus 85 ~~~~L~~~l~~g~~~~~~~~~g~~~~e~~~~~~~~----~~~f~~am~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~ 160 (301)
-+..|.|.|-|.. + ...++.+.++|+. .+.|++.+..+...-++.++ +.+. ..++...|.|+|||.
T Consensus 14 rFR~lNE~LYT~~-s-------~~A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI-~~l~-~~~~~~viaD~GCGd 83 (219)
T PF05148_consen 14 RFRWLNEQLYTTS-S-------EEALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVII-EWLK-KRPKSLVIADFGCGD 83 (219)
T ss_dssp HHHHHHHHHHHS--H-------HHHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHH-HHHC-TS-TTS-EEEES-TT
T ss_pred chHHHHHhHhcCC-H-------HHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHH-HHHH-hcCCCEEEEECCCch
Confidence 3455666665543 1 1223445566654 45666666666655567777 6665 245557999999999
Q ss_pred cHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCC-CCCc--chhHHH----------HHHHHHHHhcccCC
Q 043533 161 VSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLR-FIPP--ANAFLF----------KILKKRREAIASNG 227 (301)
Q Consensus 161 G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~ri~~~~~D~~~-~~p~--~D~i~~----------~iL~~~~~aL~p~~ 227 (301)
+.++..+.+ ..++.-+|+-.. .++| +.+|+.. |+++ .|++++ ..|+++++.|+|
T Consensus 84 A~la~~~~~---~~~V~SfDLva~------n~~V--tacdia~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~-- 150 (219)
T PF05148_consen 84 AKLAKAVPN---KHKVHSFDLVAP------NPRV--TACDIANVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLKP-- 150 (219)
T ss_dssp -HHHHH--S------EEEEESS-S------STTE--EES-TTS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEE--
T ss_pred HHHHHhccc---CceEEEeeccCC------CCCE--EEecCccCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheecc--
Confidence 999976642 347888998332 3444 5789977 8876 787664 999999999999
Q ss_pred CCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEecCCceeEEEEe
Q 043533 228 ERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIFGMKSLIEVY 300 (301)
Q Consensus 228 ~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~~i~a~ 300 (301)
||.|.|.|.... +- ..+++.+.+++.||+....-.......+++.+
T Consensus 151 -~G~L~IAEV~SR-------------f~-------------~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~ 196 (219)
T PF05148_consen 151 -GGILKIAEVKSR-------------FE-------------NVKQFIKALKKLGFKLKSKDESNKHFVLFEFK 196 (219)
T ss_dssp -EEEEEEEEEGGG--------------S--------------HHHHHHHHHCTTEEEEEEE--STTEEEEEEE
T ss_pred -CcEEEEEEeccc-------------Cc-------------CHHHHHHHHHHCCCeEEecccCCCeEEEEEEE
Confidence 899999996221 11 34567788889999988865444555555544
No 98
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.82 E-value=5.4e-09 Score=89.00 Aligned_cols=142 Identities=10% Similarity=0.113 Sum_probs=94.5
Q ss_pred chHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------------------
Q 043533 134 MTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE---------------------- 190 (301)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~---------------------- 190 (301)
..+..+ +.++..+-....+|||||..|.++..+++.+-...++++|+ +..|..|++
T Consensus 44 ~~D~rL-k~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~ 122 (288)
T KOG2899|consen 44 DSDPRL-KVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGV 122 (288)
T ss_pred CCChhh-hhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccc
Confidence 345567 77764566789999999999999999999998889999999 777776653
Q ss_pred --------------------------CCCeEEEeCCCCC-CCCcchhHHH-----------------HHHHHHHHhcccC
Q 043533 191 --------------------------ADNLKYIAGDMLR-FIPPANAFLF-----------------KILKKRREAIASN 226 (301)
Q Consensus 191 --------------------------~~ri~~~~~D~~~-~~p~~D~i~~-----------------~iL~~~~~aL~p~ 226 (301)
..|..+..-||.+ ..|.||+|++ ++|+++++.|.|
T Consensus 123 ~~~~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~p- 201 (288)
T KOG2899|consen 123 QFGPISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHP- 201 (288)
T ss_pred ccccccccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCc-
Confidence 1223333444554 3556898887 999999999999
Q ss_pred CCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhC--CCceeE
Q 043533 227 GERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDA--VFSHYK 286 (301)
Q Consensus 227 ~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~a--Gf~~~~ 286 (301)
|| ++|+|+-.... +...........+ ..---....+.+..|+.+. ||+.+.
T Consensus 202 --gG-iLvvEPQpWks-----Y~kaar~~e~~~~-ny~~i~lkp~~f~~~l~q~~vgle~~e 254 (288)
T KOG2899|consen 202 --GG-ILVVEPQPWKS-----YKKAARRSEKLAA-NYFKIFLKPEDFEDWLNQIVVGLESVE 254 (288)
T ss_pred --Cc-EEEEcCCchHH-----HHHHHHHHHHhhc-CccceecCHHHHHhhhhhhhhheeeec
Confidence 55 77777533322 1111111111100 1112245788889999887 666553
No 99
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.82 E-value=7.4e-09 Score=88.07 Aligned_cols=85 Identities=20% Similarity=0.244 Sum_probs=70.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---CCc-chhHHH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEA-FPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRF---IPP-ANAFLF 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~-~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~---~p~-~D~i~~ 213 (301)
.....+|||+|||+|.++..+++. .|..+++++|+ +++++.+++ .++++++.+|+.+. .+. +|.|++
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~ 117 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI 117 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence 566789999999999999999886 46789999999 888886653 36899999998652 223 898876
Q ss_pred --------HHHHHHHHhcccCCCCcEEEE
Q 043533 214 --------KILKKRREAIASNGERGKVII 234 (301)
Q Consensus 214 --------~iL~~~~~aL~p~~~gg~l~i 234 (301)
.+|+.+.+.|+| ||++++
T Consensus 118 ~~~~~~~~~~l~~~~~~Lkp---gG~lv~ 143 (198)
T PRK00377 118 GGGSEKLKEIISASWEIIKK---GGRIVI 143 (198)
T ss_pred CCCcccHHHHHHHHHHHcCC---CcEEEE
Confidence 899999999999 888865
No 100
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.80 E-value=4.6e-09 Score=89.50 Aligned_cols=132 Identities=17% Similarity=0.210 Sum_probs=95.3
Q ss_pred CeEEEecCCccHHHHHHHHHCCC--CeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCC-----CCc--chhHHH--
Q 043533 151 GSLVDVGGGNVSFSRIISEAFPG--IKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLRF-----IPP--ANAFLF-- 213 (301)
Q Consensus 151 ~~vlDvGgG~G~~~~~l~~~~P~--~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~~-----~p~--~D~i~~-- 213 (301)
.+|++||||.|.+..-|++.+|+ +++..+|. |.+++..++ ..|+.....|+..+ .+. .|++++
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 48999999999999999999888 99999999 888888775 34555445566542 222 787766
Q ss_pred -----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCc---cCCHHHHHHHHHh
Q 043533 214 -----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGK---ERTESEWAKLFFD 279 (301)
Q Consensus 214 -----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~---~rt~~e~~~ll~~ 279 (301)
..++++++.|+| ||.|++-|...-+-..-. +. ....++-+..+...|. ..+.+++++|+.+
T Consensus 153 vLSAi~pek~~~a~~nl~~llKP---GG~llfrDYg~~DlaqlR-F~-~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~ 227 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLLKP---GGSLLFRDYGRYDLAQLR-FK-KGQCISENFYVRGDGTRAYFFTEEELDELFTK 227 (264)
T ss_pred EEeccChHHHHHHHHHHHHHhCC---CcEEEEeecccchHHHHh-cc-CCceeecceEEccCCceeeeccHHHHHHHHHh
Confidence 999999999999 999998887554321110 00 0123344444443342 4699999999999
Q ss_pred CCCceeEE
Q 043533 280 AVFSHYKI 287 (301)
Q Consensus 280 aGf~~~~~ 287 (301)
|||..++.
T Consensus 228 agf~~~~~ 235 (264)
T KOG2361|consen 228 AGFEEVQL 235 (264)
T ss_pred cccchhcc
Confidence 99998764
No 101
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.79 E-value=3e-08 Score=85.27 Aligned_cols=118 Identities=14% Similarity=0.137 Sum_probs=82.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC------------------CCCCeEEEeCCCCC-CC--
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLP------------------EADNLKYIAGDMLR-FI-- 205 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~------------------~~~ri~~~~~D~~~-~~-- 205 (301)
....+|||+|||.|..+..|+++ +.+++++|+ |.+++.+. +..+|+++.+|+++ +.
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 45679999999999999999987 678999999 77777531 13579999999987 32
Q ss_pred -CcchhHH----H---------HHHHHHHHhcccCCCCcEEEEEeeeeCCCcc-chhhhhhhhhhchhhccccCCccCCH
Q 043533 206 -PPANAFL----F---------KILKKRREAIASNGERGKVIIIDIVINAEEE-EHELTETKFLFDIVMSVNATGKERTE 270 (301)
Q Consensus 206 -p~~D~i~----~---------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~-~~~~~~~~~~~d~~~~~~~~g~~rt~ 270 (301)
+.||.|+ + +.++++.++|+| ||+++++....++... ++ -...+.
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkp---gG~~ll~~~~~~~~~~~gp------------------p~~~~~ 169 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPP---GARQLLITLDYDQSEMAGP------------------PFSVSP 169 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEcCCCCCCCc------------------CCCCCH
Confidence 2244333 2 789999999999 8877776654432211 11 012588
Q ss_pred HHHHHHHHhCCCceeEEEe
Q 043533 271 SEWAKLFFDAVFSHYKITP 289 (301)
Q Consensus 271 ~e~~~ll~~aGf~~~~~~~ 289 (301)
+|++++|.. +|.+..+..
T Consensus 170 ~eL~~~f~~-~~~i~~~~~ 187 (213)
T TIGR03840 170 AEVEALYGG-HYEIELLES 187 (213)
T ss_pred HHHHHHhcC-CceEEEEee
Confidence 899998864 455554433
No 102
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.79 E-value=2.6e-08 Score=85.46 Aligned_cols=83 Identities=14% Similarity=0.197 Sum_probs=65.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCeEEEeCCCCCC---------CCc--chhHHH-
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDLPHAVANLPEADNLKYIAGDMLRF---------IPP--ANAFLF- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dlp~~~~~a~~~~ri~~~~~D~~~~---------~p~--~D~i~~- 213 (301)
+.+..+|||||||+|.++..+++.. +..+++++|+.++. ...+++++.+|+.++ ++. +|+|++
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~ 124 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----PIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSD 124 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----CCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecC
Confidence 3556799999999999999999986 56799999995532 234688999998762 332 777774
Q ss_pred ---------------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 ---------------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 ---------------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
.+|+.+++.|+| ||.+++..
T Consensus 125 ~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lkp---GG~~vi~~ 165 (209)
T PRK11188 125 MAPNMSGTPAVDIPRAMYLVELALDMCRDVLAP---GGSFVVKV 165 (209)
T ss_pred CCCccCCChHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEE
Confidence 478999999999 89888764
No 103
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.78 E-value=1.4e-08 Score=91.43 Aligned_cols=86 Identities=20% Similarity=0.187 Sum_probs=66.4
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCc-chhHHH-----
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIPP-ANAFLF----- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p~-~D~i~~----- 213 (301)
....+|||||||+|.+++.+++.. ..+++++|+ |.+++.+++ .+++.+..+|.....+. ||+|++
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~ 236 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE 236 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH
Confidence 345899999999999999888754 458999999 888887764 35677776664332333 898875
Q ss_pred ---HHHHHHHHhcccCCCCcEEEEEee
Q 043533 214 ---KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 ---~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
.+++++++.|+| ||.+++...
T Consensus 237 ~l~~ll~~~~~~Lkp---gG~li~sgi 260 (288)
T TIGR00406 237 VIKELYPQFSRLVKP---GGWLILSGI 260 (288)
T ss_pred HHHHHHHHHHHHcCC---CcEEEEEeC
Confidence 788999999999 898877654
No 104
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=3.5e-08 Score=87.94 Aligned_cols=118 Identities=15% Similarity=0.188 Sum_probs=81.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeE----EEeCCCCC-CCC-cchhHHH---
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE---ADNLK----YIAGDMLR-FIP-PANAFLF--- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~---~~ri~----~~~~D~~~-~~p-~~D~i~~--- 213 (301)
..++.+|+|||||+|.++++.++... .+++++|+ |..++.++. .+.|. ....+..+ +.. .||+|+.
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANIL 238 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANIL 238 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhh
Confidence 35789999999999999999999863 47999999 888887775 33343 22223322 222 2898887
Q ss_pred -----HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEE
Q 043533 214 -----KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKIT 288 (301)
Q Consensus 214 -----~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 288 (301)
++...+.+.++| ||++++.-. +.+. .+...+.+.++||+++++.
T Consensus 239 A~vl~~La~~~~~~lkp---gg~lIlSGI-l~~q---------------------------~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 239 AEVLVELAPDIKRLLKP---GGRLILSGI-LEDQ---------------------------AESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred HHHHHHHHHHHHHHcCC---CceEEEEee-hHhH---------------------------HHHHHHHHHhCCCeEeEEE
Confidence 677778888888 776665542 2211 2334677888899998887
Q ss_pred ecCCceeE
Q 043533 289 PIFGMKSL 296 (301)
Q Consensus 289 ~~~~~~~~ 296 (301)
.-..+..+
T Consensus 288 ~~~eW~~i 295 (300)
T COG2264 288 EREEWVAI 295 (300)
T ss_pred ecCCEEEE
Confidence 76554443
No 105
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.78 E-value=5.7e-08 Score=80.84 Aligned_cols=132 Identities=15% Similarity=0.168 Sum_probs=86.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC---CCCc--chhHHH--------
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLR---FIPP--ANAFLF-------- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~---~~p~--~D~i~~-------- 213 (301)
++..+|||||||.|.++..|.+. .++++.++|+ ++-+..+. ...++++++|+-+ .+|+ ||.|++
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv-~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~ 89 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACV-ARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR 89 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHH-HcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh
Confidence 45689999999999999888875 5899999999 55444444 4578899999876 3665 998888
Q ss_pred ---HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhcc---------c-cCCccCCHHHHHHHHHhC
Q 043533 214 ---KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSV---------N-ATGKERTESEWAKLFFDA 280 (301)
Q Consensus 214 ---~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~---------~-~~g~~rt~~e~~~ll~~a 280 (301)
++|+++.++ |.+.+|.-+-.. -... .....+.=.|-+ . .|=+..|..+++++.++.
T Consensus 90 ~P~~vL~EmlRV------gr~~IVsFPNFg--~W~~---R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~ 158 (193)
T PF07021_consen 90 RPDEVLEEMLRV------GRRAIVSFPNFG--HWRN---RLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCREL 158 (193)
T ss_pred HHHHHHHHHHHh------cCeEEEEecChH--HHHH---HHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHC
Confidence 666666544 444444332110 0000 000000000000 1 233456999999999999
Q ss_pred CCceeEEEecCC
Q 043533 281 VFSHYKITPIFG 292 (301)
Q Consensus 281 Gf~~~~~~~~~~ 292 (301)
|+++.+...+.+
T Consensus 159 ~i~I~~~~~~~~ 170 (193)
T PF07021_consen 159 GIRIEERVFLDG 170 (193)
T ss_pred CCEEEEEEEEcC
Confidence 999999887743
No 106
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.76 E-value=2.5e-08 Score=85.65 Aligned_cols=92 Identities=11% Similarity=0.117 Sum_probs=72.0
Q ss_pred HHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC--c
Q 043533 137 FVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFIP--P 207 (301)
Q Consensus 137 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~p--~ 207 (301)
.++ ..++ ..+..+|||||||+|.++..+++... +++++|. +++++.+++ ..+++++.+|+.+..+ .
T Consensus 69 ~l~-~~l~--~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 143 (212)
T PRK00312 69 RMT-ELLE--LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYA 143 (212)
T ss_pred HHH-HhcC--CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCC
Confidence 344 4454 56678999999999999988887753 7999998 888777664 3469999999877443 2
Q ss_pred -chhHHH-----HHHHHHHHhcccCCCCcEEEEEe
Q 043533 208 -ANAFLF-----KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 208 -~D~i~~-----~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
||+|++ .+.+.+.+.|+| ||++++.-
T Consensus 144 ~fD~I~~~~~~~~~~~~l~~~L~~---gG~lv~~~ 175 (212)
T PRK00312 144 PFDRILVTAAAPEIPRALLEQLKE---GGILVAPV 175 (212)
T ss_pred CcCEEEEccCchhhhHHHHHhcCC---CcEEEEEE
Confidence 999887 788899999999 88877643
No 107
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.75 E-value=1.7e-08 Score=89.01 Aligned_cols=64 Identities=20% Similarity=0.264 Sum_probs=51.9
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCCCCC----c-chhHHH
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE---ADNLKYIAGDMLRFIP----P-ANAFLF 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~---~~ri~~~~~D~~~~~p----~-~D~i~~ 213 (301)
..+|||+|||+|.++..+++..|..+++++|+ +.+++.+++ ..+++++.+|+++.++ . +|+|++
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~ 159 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAA 159 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEE
Confidence 45899999999999999999999999999999 888888775 2346888899876332 2 677664
No 108
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.74 E-value=1.3e-08 Score=86.21 Aligned_cols=125 Identities=13% Similarity=0.147 Sum_probs=86.6
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCC-eEEEeCCCCC--CCCc-chhHHH-----
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADN-LKYIAGDMLR--FIPP-ANAFLF----- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~r-i~~~~~D~~~--~~p~-~D~i~~----- 213 (301)
+..+.||+|+|.|..+..++-.+ --++.++|. +.-++.|++ .++ .++...-+.+ |.+. ||+|++
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 46799999999999999887554 125777776 777777763 234 3455544433 4444 999997
Q ss_pred --------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCcee
Q 043533 214 --------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHY 285 (301)
Q Consensus 214 --------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~ 285 (301)
..|+++.++|+| +|.|+|-|.+...... .+|-. .++-.|+.+.|+++|++||++++
T Consensus 134 hLTD~dlv~fL~RCk~~L~~---~G~IvvKEN~~~~~~~---------~~D~~----DsSvTRs~~~~~~lF~~AGl~~v 197 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKP---NGVIVVKENVSSSGFD---------EFDEE----DSSVTRSDEHFRELFKQAGLRLV 197 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEE---EEEEEEEEEEESSSEE---------EEETT----TTEEEEEHHHHHHHHHHCT-EEE
T ss_pred cCCHHHHHHHHHHHHHhCcC---CcEEEEEecCCCCCCc---------ccCCc----cCeeecCHHHHHHHHHHcCCEEE
Confidence 999999999999 8888888887764321 22321 34557899999999999999999
Q ss_pred EEEec
Q 043533 286 KITPI 290 (301)
Q Consensus 286 ~~~~~ 290 (301)
+...-
T Consensus 198 ~~~~Q 202 (218)
T PF05891_consen 198 KEEKQ 202 (218)
T ss_dssp EEEE-
T ss_pred Eeccc
Confidence 86544
No 109
>PRK00811 spermidine synthase; Provisional
Probab=98.74 E-value=1.1e-08 Score=91.81 Aligned_cols=84 Identities=14% Similarity=0.253 Sum_probs=68.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCeEEEeCCCCCC--C-Cc-chhH
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----------ADNLKYIAGDMLRF--I-PP-ANAF 211 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----------~~ri~~~~~D~~~~--~-p~-~D~i 211 (301)
+++++||+||||+|.++..+++..+..+++++|+ +.+++.+++ .+|++++.+|..+- . +. ||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 5678999999999999999997655568999999 888887764 46899999998752 2 23 8988
Q ss_pred HH---------------HHHHHHHHhcccCCCCcEEEE
Q 043533 212 LF---------------KILKKRREAIASNGERGKVII 234 (301)
Q Consensus 212 ~~---------------~iL~~~~~aL~p~~~gg~l~i 234 (301)
++ .+++.+++.|+| ||.+++
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---gGvlv~ 189 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKE---DGIFVA 189 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEE
Confidence 87 678999999999 786654
No 110
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.73 E-value=6.9e-09 Score=86.47 Aligned_cols=86 Identities=17% Similarity=0.285 Sum_probs=67.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCCCCCc--chhHHH------
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----ADNLKYIAGDMLRFIPP--ANAFLF------ 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----~~ri~~~~~D~~~~~p~--~D~i~~------ 213 (301)
-....+++|+|||.|.++..|+.++ -+++++|. +..++.|++ .++|+|+.+|+-+..|. ||+|++
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-GGG
T ss_pred ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHhHc
Confidence 4556799999999999999999986 37999999 888888875 58899999999776665 999887
Q ss_pred --------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 214 --------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 --------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
.+++++.++|+| ||.+++-..
T Consensus 119 L~~~~~L~~~l~~l~~~L~p---gG~LV~g~~ 147 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAP---GGHLVFGHA 147 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCC---CCEEEEEEe
Confidence 688999999999 888877654
No 111
>PRK01581 speE spermidine synthase; Validated
Probab=98.73 E-value=1.5e-08 Score=92.64 Aligned_cols=86 Identities=10% Similarity=0.156 Sum_probs=70.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------------CCCeEEEeCCCCCC---CCc-c
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------------ADNLKYIAGDMLRF---IPP-A 208 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------------~~ri~~~~~D~~~~---~p~-~ 208 (301)
..++++||+||||+|..+..+++..+..+++++|+ |+|++.|+. .+|++++.+|..+- .+. |
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 45678999999999999999998666679999999 888887762 57999999998762 233 8
Q ss_pred hhHHH----------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 209 NAFLF----------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 209 D~i~~----------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
|+|++ .+++.+++.|+| ||.+++.
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkP---gGV~V~Q 267 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTE---DGAFVCQ 267 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 88887 589999999999 7866554
No 112
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.72 E-value=4.4e-08 Score=87.88 Aligned_cols=114 Identities=16% Similarity=0.147 Sum_probs=79.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC-c-chhHHH----
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIP-P-ANAFLF---- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p-~-~D~i~~---- 213 (301)
.+..+|||||||||.+++..++... -+++++|+ |.+++.+++ .+++.+. . ..+.+ . ||+|+.
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~-~~~~~~~~~dlvvANI~~ 235 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVEDRIEVS--L-SEDLVEGKFDLVVANILA 235 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--C-TSCTCCS-EEEEEEES-H
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--E-ecccccccCCEEEECCCH
Confidence 4567999999999999999999864 47999999 888887774 4567553 1 12232 3 898876
Q ss_pred ----HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEe
Q 043533 214 ----KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITP 289 (301)
Q Consensus 214 ----~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 289 (301)
.++..+.+.|+| ||.+++.-. +.+. .+++.+.+++ ||+..+...
T Consensus 236 ~vL~~l~~~~~~~l~~---~G~lIlSGI-l~~~---------------------------~~~v~~a~~~-g~~~~~~~~ 283 (295)
T PF06325_consen 236 DVLLELAPDIASLLKP---GGYLILSGI-LEEQ---------------------------EDEVIEAYKQ-GFELVEERE 283 (295)
T ss_dssp HHHHHHHHHCHHHEEE---EEEEEEEEE-EGGG---------------------------HHHHHHHHHT-TEEEEEEEE
T ss_pred HHHHHHHHHHHHhhCC---CCEEEEccc-cHHH---------------------------HHHHHHHHHC-CCEEEEEEE
Confidence 777778889999 676665443 3221 2334566666 999888877
Q ss_pred cCCceeEE
Q 043533 290 IFGMKSLI 297 (301)
Q Consensus 290 ~~~~~~~i 297 (301)
-..+..++
T Consensus 284 ~~~W~~l~ 291 (295)
T PF06325_consen 284 EGEWVALV 291 (295)
T ss_dssp ETTEEEEE
T ss_pred ECCEEEEE
Confidence 76655544
No 113
>PLN02366 spermidine synthase
Probab=98.72 E-value=1.7e-08 Score=91.31 Aligned_cols=85 Identities=15% Similarity=0.203 Sum_probs=68.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---CCC-c-chh
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----------ADNLKYIAGDMLR---FIP-P-ANA 210 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----------~~ri~~~~~D~~~---~~p-~-~D~ 210 (301)
.+++++||+||||.|.++..+++..+-.+++++|+ +.|++.+++ .+|++++.+|.++ ..+ . ||+
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 35678999999999999999986633458999999 778887764 4699999999754 333 3 899
Q ss_pred HHH---------------HHHHHHHHhcccCCCCcEEEE
Q 043533 211 FLF---------------KILKKRREAIASNGERGKVII 234 (301)
Q Consensus 211 i~~---------------~iL~~~~~aL~p~~~gg~l~i 234 (301)
|++ .+++.++++|+| ||.+++
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~p---gGvlv~ 204 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRP---GGVVCT 204 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEE
Confidence 887 679999999999 786654
No 114
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.69 E-value=2.5e-08 Score=81.98 Aligned_cols=110 Identities=18% Similarity=0.199 Sum_probs=75.6
Q ss_pred EEeec-hHHHhcCCC---------CCCeEEEeCCCCC-CCCc--chhHHH-----------HHHHHHHHhcccCCCCcEE
Q 043533 177 TVLDL-PHAVANLPE---------ADNLKYIAGDMLR-FIPP--ANAFLF-----------KILKKRREAIASNGERGKV 232 (301)
Q Consensus 177 ~~~Dl-p~~~~~a~~---------~~ri~~~~~D~~~-~~p~--~D~i~~-----------~iL~~~~~aL~p~~~gg~l 232 (301)
+++|. ++|++.|++ ..+|+|+.+|+.+ |+++ ||+|++ ++|++++++|+| ||++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkp---GG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKP---GSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCc---CeEE
Confidence 46888 888887742 2479999999987 7765 998877 889999999999 9999
Q ss_pred EEEeeeeCCCccchhhhhhhhhhchhhc-----cc----cC------CccCCHHHHHHHHHhCCCceeEEEecC
Q 043533 233 IIIDIVINAEEEEHELTETKFLFDIVMS-----VN----AT------GKERTESEWAKLFFDAVFSHYKITPIF 291 (301)
Q Consensus 233 ~i~e~~~~~~~~~~~~~~~~~~~d~~~~-----~~----~~------g~~rt~~e~~~ll~~aGf~~~~~~~~~ 291 (301)
+|.|...+++...... .......... .. .. ...++.+|+.++|+++||+.++.+...
T Consensus 78 ~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~ 149 (160)
T PLN02232 78 SILDFNKSNQSVTTFM--QGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEIS 149 (160)
T ss_pred EEEECCCCChHHHHHH--HHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECc
Confidence 9999865543211100 0000000000 00 00 134589999999999999999887764
No 115
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.67 E-value=5.2e-08 Score=88.64 Aligned_cols=93 Identities=13% Similarity=0.221 Sum_probs=73.3
Q ss_pred HHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC---
Q 043533 138 VVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPG-IKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFIP--- 206 (301)
Q Consensus 138 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~-~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~p--- 206 (301)
++ +.++ ..+..+|||||||+|.++..+++..+. .+++++|. +++++.|++ .+++.++.+|..+..+
T Consensus 72 ll-~~L~--i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~ 148 (322)
T PRK13943 72 FM-EWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFA 148 (322)
T ss_pred HH-HhcC--CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccC
Confidence 44 4444 566789999999999999999998864 57999999 888876654 3579999999876332
Q ss_pred cchhHHH-----HHHHHHHHhcccCCCCcEEEEEe
Q 043533 207 PANAFLF-----KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 207 ~~D~i~~-----~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
.||+|++ .+...+.+.|+| ||++++..
T Consensus 149 ~fD~Ii~~~g~~~ip~~~~~~Lkp---gG~Lvv~~ 180 (322)
T PRK13943 149 PYDVIFVTVGVDEVPETWFTQLKE---GGRVIVPI 180 (322)
T ss_pred CccEEEECCchHHhHHHHHHhcCC---CCEEEEEe
Confidence 3899887 677788899999 89887743
No 116
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.66 E-value=7.3e-08 Score=78.83 Aligned_cols=122 Identities=17% Similarity=0.150 Sum_probs=75.8
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC--CCc-chhHHHHHHHH
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRF--IPP-ANAFLFKILKK 218 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~--~p~-~D~i~~~iL~~ 218 (301)
..+|||+|||.|.++..|++..-..+.+++|. +..++.|+. .+.|+|++.|+++| .+. ||+|+=
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlD----- 142 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLD----- 142 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEee-----
Confidence 34999999999999999999854456888998 777666652 45699999999985 333 888753
Q ss_pred HHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchh-hccccCC------ccCCHHHHHHHHHhCCCceeEEEecC
Q 043533 219 RREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIV-MSVNATG------KERTESEWAKLFFDAVFSHYKITPIF 291 (301)
Q Consensus 219 ~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~-~~~~~~g------~~rt~~e~~~ll~~aGf~~~~~~~~~ 291 (301)
. |++=.+... |+..... ...++|.. -+...+| -..|.+|+.+.++.-||+.....++|
T Consensus 143 ------K----GT~DAisLs-~d~~~~r----~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~~f~~~~tvp~p 207 (227)
T KOG1271|consen 143 ------K----GTLDAISLS-PDGPVGR----LVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFENFNFEYLSTVPTP 207 (227)
T ss_pred ------c----CceeeeecC-CCCcccc----eeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhcCCeEEEEeeccc
Confidence 1 222111111 0111000 00111110 0000111 13689999999999999988877775
No 117
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.66 E-value=8.7e-08 Score=83.64 Aligned_cols=90 Identities=16% Similarity=0.172 Sum_probs=72.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C------Ccc
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRF---I------PPA 208 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~---~------p~~ 208 (301)
..+.++|||||||+|.-+..+++..| +.+++.+|. ++.++.|++ .++|+++.+|+.+- + +.|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 56689999999999999999998765 789999999 788777764 57899999998762 1 239
Q ss_pred hhHHH--------HHHHHHHHhcccCCCCcEEEEEeeeeC
Q 043533 209 NAFLF--------KILKKRREAIASNGERGKVIIIDIVIN 240 (301)
Q Consensus 209 D~i~~--------~iL~~~~~aL~p~~~gg~l~i~e~~~~ 240 (301)
|+|++ ..+..+.+.|+| || ++++|.++.
T Consensus 146 D~VfiDa~k~~y~~~~~~~~~ll~~---GG-~ii~dn~l~ 181 (234)
T PLN02781 146 DFAFVDADKPNYVHFHEQLLKLVKV---GG-IIAFDNTLW 181 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHHhcCC---Ce-EEEEEcCCc
Confidence 99987 888999999999 66 556565443
No 118
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.65 E-value=7.6e-08 Score=81.11 Aligned_cols=82 Identities=16% Similarity=0.305 Sum_probs=64.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCeEEEeCCCCCC---------CCc--chhHHH-
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDLPHAVANLPEADNLKYIAGDMLRF---------IPP--ANAFLF- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dlp~~~~~a~~~~ri~~~~~D~~~~---------~p~--~D~i~~- 213 (301)
..+..+|||+|||+|.++..+++++ +..+++++|+.+.. ..++++++.+|+.++ .+. +|+|++
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 4667899999999999999999887 66789999994432 235788888888652 232 777663
Q ss_pred ---------------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 214 ---------------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 214 ---------------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
.+|+++++.|+| ||++++.
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lvi~ 145 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKP---KGNFVVK 145 (188)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHccC---CCEEEEE
Confidence 588999999999 8988775
No 119
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.63 E-value=1e-07 Score=82.30 Aligned_cols=118 Identities=13% Similarity=0.161 Sum_probs=82.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC------------------CCCCeEEEeCCCCCC----
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLP------------------EADNLKYIAGDMLRF---- 204 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~------------------~~~ri~~~~~D~~~~---- 204 (301)
....+|||+|||.|..+..|+++ +.+++++|+ +..++.+. ...+|++..+|+++.
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 45579999999999999999986 678999999 77676541 146799999999873
Q ss_pred CCcchhHH----H---------HHHHHHHHhcccCCCCcEEEEEeeeeCCCc-cchhhhhhhhhhchhhccccCCccCCH
Q 043533 205 IPPANAFL----F---------KILKKRREAIASNGERGKVIIIDIVINAEE-EEHELTETKFLFDIVMSVNATGKERTE 270 (301)
Q Consensus 205 ~p~~D~i~----~---------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~-~~~~~~~~~~~~d~~~~~~~~g~~rt~ 270 (301)
.+.+|+|+ + +.++.+.++|+| ||+++++....++.. .+| . ...+.
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~p---gG~~~l~~~~~~~~~~~gP-------p-----------~~~~~ 172 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPA---GCRGLLVTLDYPQEELAGP-------P-----------FSVSD 172 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEeCCccCCCC-------C-----------CCCCH
Confidence 12244443 2 789999999999 887666554443221 111 0 13588
Q ss_pred HHHHHHHHhCCCceeEEEe
Q 043533 271 SEWAKLFFDAVFSHYKITP 289 (301)
Q Consensus 271 ~e~~~ll~~aGf~~~~~~~ 289 (301)
+|+++++.. +|.+..+..
T Consensus 173 ~el~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 173 EEVEALYAG-CFEIELLER 190 (218)
T ss_pred HHHHHHhcC-CceEEEeee
Confidence 999999963 266555443
No 120
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.63 E-value=7.9e-08 Score=79.63 Aligned_cols=95 Identities=24% Similarity=0.370 Sum_probs=69.4
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCc--
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----ADNLKYIAGDMLR-FIPP-- 207 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----~~ri~~~~~D~~~-~~p~-- 207 (301)
..++ +.++ +.+..+|||||||+|.++..++++ ..+++++|+ +.+++.+++ .++++++.+|+.+ +.+.
T Consensus 3 ~~i~-~~~~--~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~ 77 (169)
T smart00650 3 DKIV-RAAN--LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQ 77 (169)
T ss_pred HHHH-HhcC--CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccC
Confidence 3456 6666 666789999999999999999988 568999999 777776654 4689999999987 5654
Q ss_pred chhHHH--------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 208 ANAFLF--------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 208 ~D~i~~--------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
+|.|+. .++.++.+.... - .+.+++++.
T Consensus 78 ~d~vi~n~Py~~~~~~i~~~l~~~~~-~-~~~~l~~q~ 113 (169)
T smart00650 78 PYKVVGNLPYNISTPILFKLLEEPPA-F-RDAVLMVQK 113 (169)
T ss_pred CCEEEECCCcccHHHHHHHHHhcCCC-c-ceEEEEEEH
Confidence 787766 666666654331 0 245556654
No 121
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.58 E-value=3.6e-08 Score=84.32 Aligned_cols=95 Identities=13% Similarity=0.218 Sum_probs=72.7
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCCc
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFIPP 207 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~p~ 207 (301)
..++ +.++ +....+|||||||+|.++..|++.. +.-+++.+|. ++.++.|++ ..+|+++.+|.....|.
T Consensus 62 a~~l-~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~ 138 (209)
T PF01135_consen 62 ARML-EALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE 138 (209)
T ss_dssp HHHH-HHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG
T ss_pred HHHH-HHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc
Confidence 4466 7776 7888999999999999999999874 5557999998 888888875 46899999998775553
Q ss_pred ---chhHHH-----HHHHHHHHhcccCCCCcEEEEEe
Q 043533 208 ---ANAFLF-----KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 208 ---~D~i~~-----~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
||.|++ .+=..+.+.|++ ||++++--
T Consensus 139 ~apfD~I~v~~a~~~ip~~l~~qL~~---gGrLV~pi 172 (209)
T PF01135_consen 139 EAPFDRIIVTAAVPEIPEALLEQLKP---GGRLVAPI 172 (209)
T ss_dssp G-SEEEEEESSBBSS--HHHHHTEEE---EEEEEEEE
T ss_pred CCCcCEEEEeeccchHHHHHHHhcCC---CcEEEEEE
Confidence 999988 777888899999 88887743
No 122
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=1.2e-07 Score=79.97 Aligned_cols=94 Identities=9% Similarity=0.153 Sum_probs=77.3
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCCc-
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFIPP- 207 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~p~- 207 (301)
..++ ..++ ++...+||+||||+|..+..|++..- +++.+|. ++..+.|++ -.+|.++.+|-..-+|.
T Consensus 62 A~m~-~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 62 ARML-QLLE--LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHH-HHhC--CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCC
Confidence 4456 6666 78889999999999999999999864 8999998 888888875 45699999999886664
Q ss_pred --chhHHH-----HHHHHHHHhcccCCCCcEEEEEee
Q 043533 208 --ANAFLF-----KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 208 --~D~i~~-----~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
||.|+. .+=+.+.+.|++ ||++++-.-
T Consensus 137 aPyD~I~Vtaaa~~vP~~Ll~QL~~---gGrlv~PvG 170 (209)
T COG2518 137 APYDRIIVTAAAPEVPEALLDQLKP---GGRLVIPVG 170 (209)
T ss_pred CCcCEEEEeeccCCCCHHHHHhccc---CCEEEEEEc
Confidence 999988 555777888999 899888664
No 123
>PRK03612 spermidine synthase; Provisional
Probab=98.55 E-value=9.3e-08 Score=92.83 Aligned_cols=84 Identities=14% Similarity=0.292 Sum_probs=69.4
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-------------CCCeEEEeCCCCC---CCCc-c
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPG-IKCTVLDL-PHAVANLPE-------------ADNLKYIAGDMLR---FIPP-A 208 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~-~~~~~~Dl-p~~~~~a~~-------------~~ri~~~~~D~~~---~~p~-~ 208 (301)
+++++|||||||+|..+..+++ +|. .+++++|+ |++++.+++ .+|++++.+|.++ ..++ |
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 5578999999999999999997 565 79999999 999988765 2689999999876 2334 8
Q ss_pred hhHHH----------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 209 NAFLF----------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 209 D~i~~----------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
|+|++ .+++++++.|+| ||.+++.
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~p---gG~lv~~ 414 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAP---DGLLVVQ 414 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCC---CeEEEEe
Confidence 98887 478999999999 7876654
No 124
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.55 E-value=1.8e-07 Score=88.88 Aligned_cols=94 Identities=16% Similarity=0.149 Sum_probs=74.5
Q ss_pred hhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCC---CC-c-ch
Q 043533 141 SECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLRF---IP-P-AN 209 (301)
Q Consensus 141 ~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~~---~p-~-~D 209 (301)
..++ .....+|||+|||+|..+..+++..++.+++++|+ +.+++.+++ +-+++++.+|+.+. .+ . ||
T Consensus 238 ~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD 315 (427)
T PRK10901 238 TLLA--PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFD 315 (427)
T ss_pred HHcC--CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCC
Confidence 4444 55678999999999999999999998889999999 888877764 33578899998762 22 3 88
Q ss_pred hHHH---------------------------------HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 210 AFLF---------------------------------KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 210 ~i~~---------------------------------~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
.|++ ++|+++++.|+| ||++++....+
T Consensus 316 ~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lkp---GG~lvystcs~ 375 (427)
T PRK10901 316 RILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKP---GGTLLYATCSI 375 (427)
T ss_pred EEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCC
Confidence 7762 589999999999 89888776533
No 125
>PHA03412 putative methyltransferase; Provisional
Probab=98.55 E-value=1.3e-07 Score=81.58 Aligned_cols=76 Identities=14% Similarity=0.145 Sum_probs=63.1
Q ss_pred CCeEEEecCCccHHHHHHHHHC---CCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-CCCc-chhHHH---------
Q 043533 150 LGSLVDVGGGNVSFSRIISEAF---PGIKCTVLDL-PHAVANLPE-ADNLKYIAGDMLR-FIPP-ANAFLF--------- 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~---P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~~D~~~-~~p~-~D~i~~--------- 213 (301)
..+|||+|||+|.++..++++. +..+++++|+ +.+++.|+. ..++.++.+|+.. +.+. ||+|++
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 5799999999999999999875 4678999999 888888876 4578999999976 4444 888887
Q ss_pred --------------HHHHHHHHhccc
Q 043533 214 --------------KILKKRREAIAS 225 (301)
Q Consensus 214 --------------~iL~~~~~aL~p 225 (301)
++++++.+.+++
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~ 155 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQ 155 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCC
Confidence 688888886666
No 126
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.53 E-value=2.6e-07 Score=78.30 Aligned_cols=152 Identities=11% Similarity=0.090 Sum_probs=91.5
Q ss_pred HHHHHHHHhhcccccchHHHHH---hhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCe
Q 043533 119 INQRFNEAMASDSEIMTSFVVK---SECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNL 194 (301)
Q Consensus 119 ~~~~f~~am~~~~~~~~~~~~~---~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri 194 (301)
+.+.|....-..-...++..++ ...+ ...++++||+|||||..+..|...- -+.+++|+ ..|++.|.+.+-.
T Consensus 94 ~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~Y 169 (287)
T COG4976 94 YAERFDHILVDKLGYSVPELLAEMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGLY 169 (287)
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHhcc--CCccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccch
Confidence 3455555544322222333331 3333 4458999999999999999998774 35788999 7899988762211
Q ss_pred E-EEeC---CCCCC-CCc-chhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhch
Q 043533 195 K-YIAG---DMLRF-IPP-ANAFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDI 257 (301)
Q Consensus 195 ~-~~~~---D~~~~-~p~-~D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~ 257 (301)
. ...+ +|... -++ +|+|.. .++--+...|+| ||.+...-...++... + .+..-
T Consensus 170 D~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~---gGlfaFSvE~l~~~~~---f----~l~ps 239 (287)
T COG4976 170 DTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAP---GGLFAFSVETLPDDGG---F----VLGPS 239 (287)
T ss_pred HHHHHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCC---CceEEEEecccCCCCC---e----ecchh
Confidence 1 1111 23331 222 677665 889999999999 7755443333333221 0 00000
Q ss_pred hhccccCCccCCHHHHHHHHHhCCCceeEEEec
Q 043533 258 VMSVNATGKERTESEWAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 258 ~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 290 (301)
. -.-.++.-.+++++..||.++.+..+
T Consensus 240 ~------RyAH~~~YVr~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 240 Q------RYAHSESYVRALLAASGLEVIAIEDT 266 (287)
T ss_pred h------hhccchHHHHHHHHhcCceEEEeecc
Confidence 0 01235677899999999999998876
No 127
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.52 E-value=2.3e-07 Score=85.06 Aligned_cols=85 Identities=18% Similarity=0.131 Sum_probs=67.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCCc--chhHHH---
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-FIPP--ANAFLF--- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~~p~--~D~i~~--- 213 (301)
+.+..+|||+|||+|.++++.+.. +.+++++|+ +.++..++. .+.+.+..+|+.+ +.+. +|+|++
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 566779999999999999886654 678999999 888876653 2348889999987 6543 787764
Q ss_pred -----------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 -----------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 -----------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
++|+++++.|+| ||++++.-
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~---gG~lv~~~ 294 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKS---EGWIVYAV 294 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccC---CcEEEEEE
Confidence 789999999999 89887653
No 128
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.52 E-value=1.8e-07 Score=69.10 Aligned_cols=80 Identities=21% Similarity=0.396 Sum_probs=64.2
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC------CCCCeEEEeCCCCCCC---Cc-chhHHH-------
Q 043533 152 SLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLP------EADNLKYIAGDMLRFI---PP-ANAFLF------- 213 (301)
Q Consensus 152 ~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~------~~~ri~~~~~D~~~~~---p~-~D~i~~------- 213 (301)
+++|+|||.|.++..+++ .+..+++++|+ +..+..++ ...+++++.+|+.+.. +. +|++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999998 67889999999 66655544 1578999999998732 22 787665
Q ss_pred -----HHHHHHHHhcccCCCCcEEEEE
Q 043533 214 -----KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 214 -----~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
.+++++.+.|+| ||.+++.
T Consensus 80 ~~~~~~~l~~~~~~l~~---~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLKP---GGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcCC---CCEEEEE
Confidence 788999999999 7877764
No 129
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.51 E-value=1.3e-07 Score=80.23 Aligned_cols=83 Identities=16% Similarity=0.347 Sum_probs=64.4
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC----CC-c-chhHHH----
Q 043533 151 GSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRF----IP-P-ANAFLF---- 213 (301)
Q Consensus 151 ~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~----~p-~-~D~i~~---- 213 (301)
..+||||||.|.++..+++.+|+..++++|+ ...+..+.. .+++.++.+|+..- ++ . .|-|++
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 4899999999999999999999999999999 555544432 68999999998751 33 2 454444
Q ss_pred ---------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 ---------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 ---------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
..|..+++.|+| ||.|.+..
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~---gG~l~~~T 133 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKP---GGELYFAT 133 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCC---CCEEEEEe
Confidence 999999999999 88776654
No 130
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.51 E-value=2.3e-07 Score=88.60 Aligned_cols=93 Identities=17% Similarity=0.190 Sum_probs=72.8
Q ss_pred hhhhhcccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC---CCc-c
Q 043533 141 SECKQIFEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRF---IPP-A 208 (301)
Q Consensus 141 ~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~---~p~-~ 208 (301)
..++ ..+..+|||+|||+|..+..+++.. |+.+++++|+ +.+++.+++ .++|+++.+|+.+. ++. |
T Consensus 244 ~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~f 321 (444)
T PRK14902 244 PALD--PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKF 321 (444)
T ss_pred HHhC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccC
Confidence 4444 5566899999999999999999886 6789999999 787776653 24599999998752 343 8
Q ss_pred hhHHH---------------------------------HHHHHHHHhcccCCCCcEEEEEeee
Q 043533 209 NAFLF---------------------------------KILKKRREAIASNGERGKVIIIDIV 238 (301)
Q Consensus 209 D~i~~---------------------------------~iL~~~~~aL~p~~~gg~l~i~e~~ 238 (301)
|+|++ .+|+++.+.|+| ||+++.....
T Consensus 322 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvystcs 381 (444)
T PRK14902 322 DKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKK---GGILVYSTCT 381 (444)
T ss_pred CEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEcCC
Confidence 87763 589999999999 8988765543
No 131
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.50 E-value=1.4e-07 Score=84.22 Aligned_cols=85 Identities=12% Similarity=0.170 Sum_probs=67.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---CCCc-chhHH
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----------ADNLKYIAGDMLR---FIPP-ANAFL 212 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----------~~ri~~~~~D~~~---~~p~-~D~i~ 212 (301)
+++++||+||||+|.++..+++..+..+++++|+ +++++.+++ .+|++++.+|.++ ..+. ||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 4567999999999999999998766778999999 788776653 3688999988765 1233 78776
Q ss_pred H---------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 213 F---------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 213 ~---------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
+ ..++.+++.|+| ||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~p---gG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNE---DGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCC---CcEEEEc
Confidence 5 678999999999 7877765
No 132
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.49 E-value=1.8e-06 Score=74.51 Aligned_cols=146 Identities=14% Similarity=0.195 Sum_probs=94.4
Q ss_pred hHHhhcCchHHHHHHH----HhhcccccchHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHH
Q 043533 110 WEFMNQNPAINQRFNE----AMASDSEIMTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAV 185 (301)
Q Consensus 110 ~e~~~~~~~~~~~f~~----am~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~ 185 (301)
++.+..+|..-+.|.+ ....+...-.+.++ +.+. .-++...|.|+|||.+.++. . -.-++..+||-.+
T Consensus 139 ~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii-~~ik-~r~~~~vIaD~GCGEakiA~----~-~~~kV~SfDL~a~- 210 (325)
T KOG3045|consen 139 FDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVII-RKIK-RRPKNIVIADFGCGEAKIAS----S-ERHKVHSFDLVAV- 210 (325)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHH-HHHH-hCcCceEEEecccchhhhhh----c-cccceeeeeeecC-
Confidence 3444556654444444 44444444456677 6655 24667899999999998887 1 1236888888544
Q ss_pred hcCCCCCCeEEEeCCCCC-CCCc--chhHHH----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhh
Q 043533 186 ANLPEADNLKYIAGDMLR-FIPP--ANAFLF----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETK 252 (301)
Q Consensus 186 ~~a~~~~ri~~~~~D~~~-~~p~--~D~i~~----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~ 252 (301)
.+|| +.+|+.+ |+++ .|++++ ..++++++.|++ ||.|+|.|.-+
T Consensus 211 -----~~~V--~~cDm~~vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~---gG~l~IAEv~S------------- 267 (325)
T KOG3045|consen 211 -----NERV--IACDMRNVPLEDESVDVAVFCLSLMGTNLADFIKEANRILKP---GGLLYIAEVKS------------- 267 (325)
T ss_pred -----CCce--eeccccCCcCccCcccEEEeeHhhhcccHHHHHHHHHHHhcc---CceEEEEehhh-------------
Confidence 3444 5789988 7775 776543 899999999999 99999998622
Q ss_pred hhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEecCCceeEEEE
Q 043533 253 FLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIFGMKSLIEV 299 (301)
Q Consensus 253 ~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~~i~a 299 (301)
++.| ..++.+.|.+.||....+.-......+++.
T Consensus 268 Rf~d-------------v~~f~r~l~~lGF~~~~~d~~n~~F~lfef 301 (325)
T KOG3045|consen 268 RFSD-------------VKGFVRALTKLGFDVKHKDVSNKYFTLFEF 301 (325)
T ss_pred hccc-------------HHHHHHHHHHcCCeeeehhhhcceEEEEEE
Confidence 1222 222567777888877766554444444443
No 133
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=6.8e-07 Score=77.28 Aligned_cols=109 Identities=15% Similarity=0.289 Sum_probs=88.0
Q ss_pred Hhhcccccc----hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHH-HCCCCeEEEeec-hHHHhcCCC-------CC
Q 043533 126 AMASDSEIM----TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISE-AFPGIKCTVLDL-PHAVANLPE-------AD 192 (301)
Q Consensus 126 am~~~~~~~----~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~-~~P~~~~~~~Dl-p~~~~~a~~-------~~ 192 (301)
.|...++.+ +.-++ .... .....+|+|.|.|+|.++..|++ -+|.-+++.+|. ++..+.|++ .+
T Consensus 70 ~~~R~tQiIyPKD~~~I~-~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d 146 (256)
T COG2519 70 SMKRRTQIIYPKDAGYIV-ARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGD 146 (256)
T ss_pred hCcCCCceecCCCHHHHH-HHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcccc
Confidence 366555533 23355 5555 78889999999999999999997 578899999999 777777775 57
Q ss_pred CeEEEeCCCCCC-CCc-chhHHH------HHHHHHHHhcccCCCCcEEEEEeeeeC
Q 043533 193 NLKYIAGDMLRF-IPP-ANAFLF------KILKKRREAIASNGERGKVIIIDIVIN 240 (301)
Q Consensus 193 ri~~~~~D~~~~-~p~-~D~i~~------~iL~~~~~aL~p~~~gg~l~i~e~~~~ 240 (301)
++++..+|..+. .++ +|++++ ..+.+++++|+| ||.+.++-+..+
T Consensus 147 ~v~~~~~Dv~~~~~~~~vDav~LDmp~PW~~le~~~~~Lkp---gg~~~~y~P~ve 199 (256)
T COG2519 147 RVTLKLGDVREGIDEEDVDAVFLDLPDPWNVLEHVSDALKP---GGVVVVYSPTVE 199 (256)
T ss_pred ceEEEeccccccccccccCEEEEcCCChHHHHHHHHHHhCC---CcEEEEEcCCHH
Confidence 799999999884 454 999999 999999999999 898888776544
No 134
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.43 E-value=5.1e-07 Score=86.16 Aligned_cols=126 Identities=9% Similarity=0.088 Sum_probs=84.7
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC----
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRF---- 204 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~---- 204 (301)
..++ +.++ ..+..+|||+|||+|.++..+++.. .+++++|. +++++.|++ .++++|+.+|+.+.
T Consensus 287 ~~vl-~~l~--~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~ 361 (443)
T PRK13168 287 ARAL-EWLD--PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQ 361 (443)
T ss_pred HHHH-HHhc--CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhh
Confidence 3344 4443 4556799999999999999999886 58999999 888887774 35799999998642
Q ss_pred -CC-c-chhHHH--------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHH
Q 043533 205 -IP-P-ANAFLF--------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEW 273 (301)
Q Consensus 205 -~p-~-~D~i~~--------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~ 273 (301)
++ . +|+|++ .+++.+.+ ++| .+++.+.. ++. ....|+.
T Consensus 362 ~~~~~~fD~Vi~dPPr~g~~~~~~~l~~-~~~----~~ivyvSC---np~--------tlaRDl~--------------- 410 (443)
T PRK13168 362 PWALGGFDKVLLDPPRAGAAEVMQALAK-LGP----KRIVYVSC---NPA--------TLARDAG--------------- 410 (443)
T ss_pred hhhcCCCCEEEECcCCcChHHHHHHHHh-cCC----CeEEEEEe---ChH--------HhhccHH---------------
Confidence 22 2 788887 55555544 566 34544443 111 1223433
Q ss_pred HHHHHhCCCceeEEEecC--CceeEEEE
Q 043533 274 AKLFFDAVFSHYKITPIF--GMKSLIEV 299 (301)
Q Consensus 274 ~~ll~~aGf~~~~~~~~~--~~~~~i~a 299 (301)
.|.+.||++.++.++. ..+.-||+
T Consensus 411 --~L~~~gY~l~~i~~~DmFP~T~HvE~ 436 (443)
T PRK13168 411 --VLVEAGYRLKRAGMLDMFPHTGHVES 436 (443)
T ss_pred --HHhhCCcEEEEEEEeccCCCCCcEEE
Confidence 3346899999999884 34566665
No 135
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.41 E-value=4.4e-07 Score=86.17 Aligned_cols=96 Identities=15% Similarity=0.124 Sum_probs=73.3
Q ss_pred hhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CC--C-c-
Q 043533 141 SECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FI--P-P- 207 (301)
Q Consensus 141 ~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~--p-~- 207 (301)
..++ .....+|||+|||+|..+..+++..++.+++++|. +++++.+++ ..++.++.+|... +. + .
T Consensus 232 ~~L~--~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~ 309 (426)
T TIGR00563 232 TWLA--PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQ 309 (426)
T ss_pred HHhC--CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccc
Confidence 4455 55678999999999999999999988889999999 788776654 1234446677654 22 2 2
Q ss_pred chhHHH---------------------------------HHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 043533 208 ANAFLF---------------------------------KILKKRREAIASNGERGKVIIIDIVINA 241 (301)
Q Consensus 208 ~D~i~~---------------------------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~ 241 (301)
||.|++ ++|+++++.|+| ||++++....+..
T Consensus 310 fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkp---gG~lvystcs~~~ 373 (426)
T TIGR00563 310 FDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKT---GGTLVYATCSVLP 373 (426)
T ss_pred cCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCCh
Confidence 887763 699999999999 8999888765543
No 136
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.38 E-value=2.1e-06 Score=74.10 Aligned_cols=88 Identities=11% Similarity=0.104 Sum_probs=69.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC------------------CCCCeEEEeCCCCC-CC-C
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLP------------------EADNLKYIAGDMLR-FI-P 206 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~------------------~~~ri~~~~~D~~~-~~-p 206 (301)
.+..+||+.|||.|.-+.-|+++ +.+++++|+ +..++.+. .+.+|++..+|+|+ +. +
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 34579999999999999999987 567999999 66666631 15689999999998 42 2
Q ss_pred ----cchhHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeC
Q 043533 207 ----PANAFLF-------------KILKKRREAIASNGERGKVIIIDIVIN 240 (301)
Q Consensus 207 ----~~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~ 240 (301)
.+|+|+= +..+++.+.|+| ||+++++....+
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~p---gg~llll~~~~~ 167 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSN---NTQILLLVMEHD 167 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCC---CcEEEEEEEecC
Confidence 2666442 899999999999 899888876444
No 137
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.37 E-value=7.1e-07 Score=84.96 Aligned_cols=94 Identities=13% Similarity=0.126 Sum_probs=73.1
Q ss_pred hhhhhcccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C----C-C
Q 043533 141 SECKQIFEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-F----I-P 206 (301)
Q Consensus 141 ~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~----~-p 206 (301)
..++ ..+..+|||+|||+|..+..+++.. +..+++++|. +++++.+++ -++|+++.+|+.+ + . +
T Consensus 246 ~~l~--~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~ 323 (434)
T PRK14901 246 PLLD--PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWR 323 (434)
T ss_pred HHhC--CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccccccc
Confidence 4444 5567899999999999999999885 4569999999 778877654 2468999999865 3 1 1
Q ss_pred c-chhHHH---------------------------------HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 207 P-ANAFLF---------------------------------KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 207 ~-~D~i~~---------------------------------~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
. ||.|++ ++|+++.+.|+| ||+++.....+
T Consensus 324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkp---gG~lvystcsi 387 (434)
T PRK14901 324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKP---GGTLVYATCTL 387 (434)
T ss_pred ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCC
Confidence 2 787764 789999999999 89888776544
No 138
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.37 E-value=4.9e-07 Score=80.60 Aligned_cols=86 Identities=14% Similarity=0.236 Sum_probs=73.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---CCCc-chhH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----------ADNLKYIAGDMLR---FIPP-ANAF 211 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----------~~ri~~~~~D~~~---~~p~-~D~i 211 (301)
.+++++||-||||.|.++.++++..+--+++.+|+ |.|++.+++ .+|++++.+|..+ ..+. ||+|
T Consensus 74 h~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvI 153 (282)
T COG0421 74 HPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVI 153 (282)
T ss_pred CCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEE
Confidence 35567999999999999999999998889999999 999998875 4899999999876 3454 9999
Q ss_pred HH---------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 212 LF---------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 212 ~~---------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
++ ..++.++++|++ +|.++..
T Consensus 154 i~D~tdp~gp~~~Lft~eFy~~~~~~L~~---~Gi~v~q 189 (282)
T COG0421 154 IVDSTDPVGPAEALFTEEFYEGCRRALKE---DGIFVAQ 189 (282)
T ss_pred EEcCCCCCCcccccCCHHHHHHHHHhcCC---CcEEEEe
Confidence 98 899999999999 6755444
No 139
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.37 E-value=8e-07 Score=84.38 Aligned_cols=90 Identities=12% Similarity=0.151 Sum_probs=70.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CCc-chhHHH-
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-F--IPP-ANAFLF- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~--~p~-~D~i~~- 213 (301)
..+..+|||+|||+|..+..+++.. +..+++++|+ ++.++.+++ -++++++.+|... + .+. ||.|++
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 5667899999999999999999875 5679999999 888877764 2468899999865 3 223 777664
Q ss_pred --------------------------------HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 214 --------------------------------KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 214 --------------------------------~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
++|.++++.|+| ||.++.....+
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYsTCs~ 369 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEK---GGILLYSTCTV 369 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCC
Confidence 679999999999 88766555443
No 140
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.37 E-value=8.1e-07 Score=84.80 Aligned_cols=90 Identities=18% Similarity=0.279 Sum_probs=70.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC-c-chhHHH---
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFIP-P-ANAFLF--- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~p-~-~D~i~~--- 213 (301)
.....+|||+|||+|..+..+++..+ ..+++++|+ +++++.+++ .++|+++.+|+.+..+ . ||+|++
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 44567999999999999999988754 568999999 888877764 2468999999876223 3 787763
Q ss_pred ------------------------------HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 214 ------------------------------KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 214 ------------------------------~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
++|+++++.|+| ||++++....+
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvystcs~ 380 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKP---GGVLVYATCSI 380 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCC
Confidence 589999999999 88888766544
No 141
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.32 E-value=1.8e-06 Score=78.43 Aligned_cols=133 Identities=17% Similarity=0.185 Sum_probs=85.2
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEe----CCCCCCC--C-c-chhH
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE--------ADNLKYIA----GDMLRFI--P-P-ANAF 211 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~--------~~ri~~~~----~D~~~~~--p-~-~D~i 211 (301)
...++||||||+|.+...|+.+.++.+++++|+ +.+++.|+. .++|++.. .+++..+ + + ||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 357999999999999999998889999999999 888887774 35787754 2344432 2 2 9999
Q ss_pred HH---------H----H---HHHHH----------------HhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhh
Q 043533 212 LF---------K----I---LKKRR----------------EAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVM 259 (301)
Q Consensus 212 ~~---------~----i---L~~~~----------------~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~ 259 (301)
++ . - .++.. +.+.+ ||.+-++..++.+... +.. ...+-.+
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~---GGe~~fi~~mi~eS~~---~~~-~~gwfts- 265 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCE---GGEVAFIKRMIEESKA---FAK-QVLWFTS- 265 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeC---CcEeeeehHhhHHHHH---HHh-hCcEEEE-
Confidence 98 1 1 22222 11223 5555444444433311 100 1111112
Q ss_pred ccccCCccCCHHHHHHHHHhCCCceeEEEec-CC
Q 043533 260 SVNATGKERTESEWAKLFFDAVFSHYKITPI-FG 292 (301)
Q Consensus 260 ~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~-~~ 292 (301)
.-|+.-+...+.+.|++.|.+.+++... .|
T Consensus 266 ---mv~kk~~l~~l~~~L~~~~~~~~~~~e~~qG 296 (321)
T PRK11727 266 ---LVSKKENLPPLYRALKKVGAVEVKTIEMAQG 296 (321)
T ss_pred ---EeeccCCHHHHHHHHHHcCCceEEEEEEeCC
Confidence 2255568999999999999988887765 44
No 142
>PLN02672 methionine S-methyltransferase
Probab=98.31 E-value=1.1e-06 Score=90.76 Aligned_cols=64 Identities=23% Similarity=0.273 Sum_probs=54.4
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------------------CCCeEEEeCCCCCCCC
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----------------------ADNLKYIAGDMLRFIP 206 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----------------------~~ri~~~~~D~~~~~p 206 (301)
..+|||||||+|.+++.+++++|..+++++|+ |.+++.|+. .+|++|+.+|++++.+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 35899999999999999999999999999999 888877642 1489999999988543
Q ss_pred ----cchhHHH
Q 043533 207 ----PANAFLF 213 (301)
Q Consensus 207 ----~~D~i~~ 213 (301)
.+|+|++
T Consensus 199 ~~~~~fDlIVS 209 (1082)
T PLN02672 199 DNNIELDRIVG 209 (1082)
T ss_pred ccCCceEEEEE
Confidence 2898887
No 143
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.30 E-value=1.4e-06 Score=77.77 Aligned_cols=82 Identities=21% Similarity=0.324 Sum_probs=67.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCCc-chhHHH----
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPE-------ADNLKYIAGDMLR-FIPP-ANAFLF---- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~-------~~ri~~~~~D~~~-~~p~-~D~i~~---- 213 (301)
|. .+.|||||||+|.++.-.+.+. .-++..++-.+|.+.|++ .+||++++|-..+ ++|+ +|+++.
T Consensus 176 F~-~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG 253 (517)
T KOG1500|consen 176 FQ-DKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMG 253 (517)
T ss_pred cC-CcEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccch
Confidence 54 4889999999999999888875 457999999999988875 6899999999988 8998 999886
Q ss_pred ------HHH---HHHHHhcccCCCCcEEE
Q 043533 214 ------KIL---KKRREAIASNGERGKVI 233 (301)
Q Consensus 214 ------~iL---~~~~~aL~p~~~gg~l~ 233 (301)
++| -.+++.|+| .|+.+
T Consensus 254 ~mL~NERMLEsYl~Ark~l~P---~GkMf 279 (517)
T KOG1500|consen 254 YMLVNERMLESYLHARKWLKP---NGKMF 279 (517)
T ss_pred hhhhhHHHHHHHHHHHhhcCC---CCccc
Confidence 444 345689999 67655
No 144
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.30 E-value=1.4e-06 Score=77.85 Aligned_cols=68 Identities=22% Similarity=0.307 Sum_probs=55.1
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEeCCCCC-CCCc
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE---ADNLKYIAGDMLR-FIPP 207 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~---~~ri~~~~~D~~~-~~p~ 207 (301)
+..++ +.++ .....+|||||||+|.++..++++.+ +++++|. +.+++.+++ .++++++.+|+.+ +++.
T Consensus 31 ~~~i~-~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 31 LDKIV-DAAG--PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSE 103 (272)
T ss_pred HHHHH-HhcC--CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHH
Confidence 34466 6555 66678999999999999999999976 8999999 888887764 3689999999987 5543
No 145
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.29 E-value=1.8e-06 Score=74.50 Aligned_cols=119 Identities=18% Similarity=0.199 Sum_probs=83.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------------------CCCeEEEeCCCCC-CCC
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------------------ADNLKYIAGDMLR-FIP 206 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------------------~~ri~~~~~D~~~-~~p 206 (301)
.....+||+.|||.|.-+..|+++ +.+++++|+ +..++.+.+ .++|++..+|+|+ +-.
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 345569999999999999999988 568999999 777766510 4679999999998 322
Q ss_pred ---cchhHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCcc-chhhhhhhhhhchhhccccCCccCC
Q 043533 207 ---PANAFLF-------------KILKKRREAIASNGERGKVIIIDIVINAEEE-EHELTETKFLFDIVMSVNATGKERT 269 (301)
Q Consensus 207 ---~~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~-~~~~~~~~~~~d~~~~~~~~g~~rt 269 (301)
.||+|+= +-.+++++.|+| ||+++++....+.... +|++ ..+
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p---~g~~lLi~l~~~~~~~~GPPf------------------~v~ 171 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKP---GGRGLLITLEYPQGEMEGPPF------------------SVT 171 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEE---EEEEEEEEEES-CSCSSSSS----------------------
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCC---CCcEEEEEEEcCCcCCCCcCC------------------CCC
Confidence 2666541 899999999999 8985555443332211 1111 136
Q ss_pred HHHHHHHHHhCCCceeEEEe
Q 043533 270 ESEWAKLFFDAVFSHYKITP 289 (301)
Q Consensus 270 ~~e~~~ll~~aGf~~~~~~~ 289 (301)
.+|+++++. .+|++.....
T Consensus 172 ~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 172 EEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp HHHHHHHHT-TTEEEEEEEE
T ss_pred HHHHHHHhc-CCcEEEEEec
Confidence 788999998 8888776654
No 146
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.29 E-value=2e-06 Score=74.81 Aligned_cols=78 Identities=17% Similarity=0.235 Sum_probs=56.1
Q ss_pred hHHHHHhhhhh-cccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEe----CCC
Q 043533 135 TSFVVKSECKQ-IFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIA----GDM 201 (301)
Q Consensus 135 ~~~~~~~~~~~-~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~----~D~ 201 (301)
++.++ +.+.+ .......+||+|||+|..+..++..-|..+++.+|. +.++..|.+ .+|+.++. .|.
T Consensus 134 V~~Vi-d~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~ 212 (328)
T KOG2904|consen 134 VEAVI-DALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDA 212 (328)
T ss_pred HHHHH-HHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccccc
Confidence 34444 44432 244556899999999999999999999999999999 666665553 68888874 455
Q ss_pred CCCCC--c--chhHHH
Q 043533 202 LRFIP--P--ANAFLF 213 (301)
Q Consensus 202 ~~~~p--~--~D~i~~ 213 (301)
+.+.| . .|++++
T Consensus 213 ~~~~~l~~~~~dllvs 228 (328)
T KOG2904|consen 213 SDEHPLLEGKIDLLVS 228 (328)
T ss_pred ccccccccCceeEEec
Confidence 54433 2 677666
No 147
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.29 E-value=2.1e-07 Score=79.44 Aligned_cols=90 Identities=22% Similarity=0.289 Sum_probs=72.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC-------C--Ccc
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRF-------I--PPA 208 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~-------~--p~~ 208 (301)
..++++||+||+++|.-+..+++..| +.+++.+|. |+..+.|++ .+||+++.||+.+- - ..|
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 56789999999999999999999877 689999999 777777764 57999999998651 1 139
Q ss_pred hhHHH--------HHHHHHHHhcccCCCCcEEEEEeeeeC
Q 043533 209 NAFLF--------KILKKRREAIASNGERGKVIIIDIVIN 240 (301)
Q Consensus 209 D~i~~--------~iL~~~~~aL~p~~~gg~l~i~e~~~~ 240 (301)
|+|++ ..+..+.+.|+| |.++|+|.++.
T Consensus 123 D~VFiDa~K~~y~~y~~~~~~ll~~----ggvii~DN~l~ 158 (205)
T PF01596_consen 123 DFVFIDADKRNYLEYFEKALPLLRP----GGVIIADNVLW 158 (205)
T ss_dssp EEEEEESTGGGHHHHHHHHHHHEEE----EEEEEEETTTG
T ss_pred eEEEEcccccchhhHHHHHhhhccC----CeEEEEccccc
Confidence 99998 888889999999 55777776554
No 148
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.29 E-value=1.4e-06 Score=77.50 Aligned_cols=90 Identities=12% Similarity=0.076 Sum_probs=69.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CCcchhHHH--
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-F--IPPANAFLF-- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~--~p~~D~i~~-- 213 (301)
.....+|||+|||+|..+..+++... ..+++++|+ +..++.+++ ..+|+++.+|... + .+.||.|++
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 45668999999999999999998864 468999999 777776654 2568888888754 2 223787753
Q ss_pred -------------------------------HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 214 -------------------------------KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 214 -------------------------------~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
++|+++.+.|+| ||+|+.....+
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvYstcs~ 202 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKP---GGVLVYSTCSL 202 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCC
Confidence 699999999999 88776655433
No 149
>PLN02823 spermine synthase
Probab=98.29 E-value=9.6e-07 Score=80.84 Aligned_cols=84 Identities=14% Similarity=0.122 Sum_probs=68.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCC---CCc-chhHH
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----------ADNLKYIAGDMLRF---IPP-ANAFL 212 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----------~~ri~~~~~D~~~~---~p~-~D~i~ 212 (301)
+++++||.||||.|..+..+++..+..+++++|+ |++++.+++ .+|++++.+|.++- .+. ||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 4578999999999999999998776778999999 899988874 47999999998762 223 88888
Q ss_pred H-----------------HHHH-HHHHhcccCCCCcEEEE
Q 043533 213 F-----------------KILK-KRREAIASNGERGKVII 234 (301)
Q Consensus 213 ~-----------------~iL~-~~~~aL~p~~~gg~l~i 234 (301)
+ ..++ .+++.|+| ||.+++
T Consensus 182 ~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p---~Gvlv~ 218 (336)
T PLN02823 182 GDLADPVEGGPCYQLYTKSFYERIVKPKLNP---GGIFVT 218 (336)
T ss_pred ecCCCccccCcchhhccHHHHHHHHHHhcCC---CcEEEE
Confidence 7 4677 89999999 775443
No 150
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.26 E-value=2.1e-06 Score=77.03 Aligned_cols=76 Identities=21% Similarity=0.234 Sum_probs=59.8
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-C--C
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE----ADNLKYIAGDMLR-F--I 205 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~----~~ri~~~~~D~~~-~--~ 205 (301)
..+++ +.+. ..+...+||++||.|..+..+++..| +.+++++|. |++++.+++ .+|++++.+||.+ . .
T Consensus 8 l~Evl-~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 8 LDEVV-DALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVL 84 (296)
T ss_pred HHHHH-HhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHH
Confidence 35566 6665 45567999999999999999999986 789999999 999888765 3689999999865 1 2
Q ss_pred C----cchhHHH
Q 043533 206 P----PANAFLF 213 (301)
Q Consensus 206 p----~~D~i~~ 213 (301)
+ .+|.|++
T Consensus 85 ~~~~~~vDgIl~ 96 (296)
T PRK00050 85 AEGLGKVDGILL 96 (296)
T ss_pred HcCCCccCEEEE
Confidence 1 3666665
No 151
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.25 E-value=2.1e-06 Score=75.89 Aligned_cols=82 Identities=18% Similarity=0.265 Sum_probs=62.0
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCcc
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----ADNLKYIAGDMLR-FIPPA 208 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----~~ri~~~~~D~~~-~~p~~ 208 (301)
...++ +.++ ..+..+|||||||+|.++..|+++++ +++++|. +.+++.++. .++++++.+|+.+ +++.+
T Consensus 18 ~~~i~-~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~ 92 (253)
T TIGR00755 18 IQKIV-EAAN--VLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDF 92 (253)
T ss_pred HHHHH-HhcC--CCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHc
Confidence 44566 6665 66678999999999999999999986 4899999 777776653 4789999999987 66555
Q ss_pred h---hHHH--------HHHHHHHH
Q 043533 209 N---AFLF--------KILKKRRE 221 (301)
Q Consensus 209 D---~i~~--------~iL~~~~~ 221 (301)
| +++. .++.++.+
T Consensus 93 d~~~~vvsNlPy~i~~~il~~ll~ 116 (253)
T TIGR00755 93 PKQLKVVSNLPYNISSPLIFKLLE 116 (253)
T ss_pred CCcceEEEcCChhhHHHHHHHHhc
Confidence 5 4443 56666654
No 152
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.25 E-value=2.1e-06 Score=73.52 Aligned_cols=85 Identities=18% Similarity=0.221 Sum_probs=61.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEe-------CCCCC--CCCc-chhHHH---
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIA-------GDMLR--FIPP-ANAFLF--- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~-------~D~~~--~~p~-~D~i~~--- 213 (301)
.+.+.++|||||+|..++.++..|- ++|+.|. +.|++.|++..+++... .++.+ ..++ .|+|++
T Consensus 32 ~~h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 32 EGHRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred CCcceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh
Confidence 3455999999999977777777754 5999999 99999999855544332 22222 1133 899988
Q ss_pred -------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 -------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 -------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
++.++++++|++ + ||.+.|--
T Consensus 110 ~HWFdle~fy~~~~rvLRk-~-Gg~iavW~ 137 (261)
T KOG3010|consen 110 VHWFDLERFYKEAYRVLRK-D-GGLIAVWN 137 (261)
T ss_pred HHhhchHHHHHHHHHHcCC-C-CCEEEEEE
Confidence 999999999999 2 55555543
No 153
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.24 E-value=1.3e-06 Score=77.38 Aligned_cols=74 Identities=20% Similarity=0.321 Sum_probs=58.8
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCcc
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----ADNLKYIAGDMLR-FIPPA 208 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----~~ri~~~~~D~~~-~~p~~ 208 (301)
+..++ +.++ ..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++.+
T Consensus 18 ~~~iv-~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~ 92 (258)
T PRK14896 18 VDRIV-EYAE--DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEF 92 (258)
T ss_pred HHHHH-HhcC--CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhc
Confidence 45566 6555 6667899999999999999999984 58999999 777776654 4689999999987 66667
Q ss_pred hhHHH
Q 043533 209 NAFLF 213 (301)
Q Consensus 209 D~i~~ 213 (301)
|.|++
T Consensus 93 d~Vv~ 97 (258)
T PRK14896 93 NKVVS 97 (258)
T ss_pred eEEEE
Confidence 76655
No 154
>PLN02476 O-methyltransferase
Probab=98.23 E-value=1.3e-06 Score=77.66 Aligned_cols=91 Identities=12% Similarity=0.086 Sum_probs=73.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C-----C-cc
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRF---I-----P-PA 208 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~---~-----p-~~ 208 (301)
..+.++|||||+++|..++.+++..| +.+++.+|. ++..+.|++ .++|+++.||+.+- + . .|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 56789999999999999999998765 678999999 777777764 57999999998652 2 2 39
Q ss_pred hhHHH--------HHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 043533 209 NAFLF--------KILKKRREAIASNGERGKVIIIDIVINA 241 (301)
Q Consensus 209 D~i~~--------~iL~~~~~aL~p~~~gg~l~i~e~~~~~ 241 (301)
|+|++ ..+..+.+.|+| || ++|+|.++..
T Consensus 196 D~VFIDa~K~~Y~~y~e~~l~lL~~---GG-vIV~DNvL~~ 232 (278)
T PLN02476 196 DFAFVDADKRMYQDYFELLLQLVRV---GG-VIVMDNVLWH 232 (278)
T ss_pred CEEEECCCHHHHHHHHHHHHHhcCC---Cc-EEEEecCccC
Confidence 99998 888899999999 55 5666655543
No 155
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.22 E-value=1.9e-06 Score=73.83 Aligned_cols=92 Identities=16% Similarity=0.260 Sum_probs=77.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEe-CCCCC--C--C-CcchhH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE-------ADNLKYIA-GDMLR--F--I-PPANAF 211 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~-~D~~~--~--~-p~~D~i 211 (301)
..+.++||+||.+.|.-++.++..-| +.+++.+|. |+.++.|++ .++|+.+. +|..+ . . +.||+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 67889999999999999999999999 889999999 888888875 67788888 58765 2 1 239999
Q ss_pred HH--------HHHHHHHHhcccCCCCcEEEEEeeeeCCC
Q 043533 212 LF--------KILKKRREAIASNGERGKVIIIDIVINAE 242 (301)
Q Consensus 212 ~~--------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~ 242 (301)
++ ..|..+.+.|+| |+++|+|.++...
T Consensus 137 FIDadK~~yp~~le~~~~lLr~----GGliv~DNvl~~G 171 (219)
T COG4122 137 FIDADKADYPEYLERALPLLRP----GGLIVADNVLFGG 171 (219)
T ss_pred EEeCChhhCHHHHHHHHHHhCC----CcEEEEeecccCC
Confidence 99 999999999999 5577777766654
No 156
>PRK00536 speE spermidine synthase; Provisional
Probab=98.20 E-value=2.2e-06 Score=75.61 Aligned_cols=83 Identities=10% Similarity=0.131 Sum_probs=66.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCCCCCc-chhHHH-
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----------ADNLKYIAGDMLRFIPP-ANAFLF- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----------~~ri~~~~~D~~~~~p~-~D~i~~- 213 (301)
.+++++||=||||.|..+.++++. |. +++.+|+ ++|++.+++ .+|++++. .+.+...+ ||+|++
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~~~~~~~fDVIIvD 146 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLLDLDIKKYDLIICL 146 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhhhccCCcCCEEEEc
Confidence 467899999999999999999987 55 9999999 888887775 68999886 23222223 999998
Q ss_pred -----HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 -----KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 -----~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
...+.++++|+| || +++..
T Consensus 147 s~~~~~fy~~~~~~L~~---~G-i~v~Q 170 (262)
T PRK00536 147 QEPDIHKIDGLKRMLKE---DG-VFISV 170 (262)
T ss_pred CCCChHHHHHHHHhcCC---Cc-EEEEC
Confidence 789999999999 66 44443
No 157
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.18 E-value=1e-06 Score=74.39 Aligned_cols=86 Identities=17% Similarity=0.318 Sum_probs=64.9
Q ss_pred hhhhhcccC--CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCe--EEEeCCCCC--CCCc--chhH
Q 043533 141 SECKQIFEG--LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNL--KYIAGDMLR--FIPP--ANAF 211 (301)
Q Consensus 141 ~~~~~~~~~--~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri--~~~~~D~~~--~~p~--~D~i 211 (301)
+.++ +++ ..-|||||||+|..+..|... +-..+++|+ |.|++.|.+ ..+ .++-+|+=+ |++. ||-+
T Consensus 42 ELLa--lp~~~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~-~e~egdlil~DMG~GlpfrpGtFDg~ 116 (270)
T KOG1541|consen 42 ELLA--LPGPKSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVE-RELEGDLILCDMGEGLPFRPGTFDGV 116 (270)
T ss_pred HHhh--CCCCCCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHH-hhhhcCeeeeecCCCCCCCCCccceE
Confidence 4444 555 778999999999999888765 468999999 999999885 233 366778877 4433 8876
Q ss_pred HH----------------------HHHHHHHHhcccCCCCcEEEE
Q 043533 212 LF----------------------KILKKRREAIASNGERGKVII 234 (301)
Q Consensus 212 ~~----------------------~iL~~~~~aL~p~~~gg~l~i 234 (301)
++ .++..++.+|++ |++-++
T Consensus 117 ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~r---g~raV~ 158 (270)
T KOG1541|consen 117 ISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKR---GARAVL 158 (270)
T ss_pred EEeeeeeeecccCccccChHHHHHHHhhhhhhhhcc---CceeEE
Confidence 65 678889999998 666554
No 158
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.18 E-value=3.1e-06 Score=74.10 Aligned_cols=113 Identities=12% Similarity=0.242 Sum_probs=80.3
Q ss_pred HHHHHhhcccccc----hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-----
Q 043533 122 RFNEAMASDSEIM----TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEA-FPGIKCTVLDL-PHAVANLPE----- 190 (301)
Q Consensus 122 ~f~~am~~~~~~~----~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~P~~~~~~~Dl-p~~~~~a~~----- 190 (301)
.|...|...++.+ +.-++ -.++ ...+.+||+.|.|+|.++..|++. .|.-++.-+|. ++-.+.|++
T Consensus 12 ~~~~~l~rrtQIiYpkD~~~I~-~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~ 88 (247)
T PF08704_consen 12 LWTLSLPRRTQIIYPKDISYIL-MRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH 88 (247)
T ss_dssp HHHHTS-SSS----HHHHHHHH-HHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT
T ss_pred HHHHhccCCcceeeCchHHHHH-HHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc
Confidence 3555565555543 23355 5566 788899999999999999999975 79999999999 777766664
Q ss_pred --CCCeEEEeCCCCC-CCC----c-chhHHH------HHHHHHHHhc-ccCCCCcEEEEEeeeeC
Q 043533 191 --ADNLKYIAGDMLR-FIP----P-ANAFLF------KILKKRREAI-ASNGERGKVIIIDIVIN 240 (301)
Q Consensus 191 --~~ri~~~~~D~~~-~~p----~-~D~i~~------~iL~~~~~aL-~p~~~gg~l~i~e~~~~ 240 (301)
.++|++..+|..+ .++ . +|.|++ ..+.++.++| ++ ||++.++-+.+.
T Consensus 89 gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~---gG~i~~fsP~ie 150 (247)
T PF08704_consen 89 GLDDNVTVHHRDVCEEGFDEELESDFDAVFLDLPDPWEAIPHAKRALKKP---GGRICCFSPCIE 150 (247)
T ss_dssp TCCTTEEEEES-GGCG--STT-TTSEEEEEEESSSGGGGHHHHHHHE-EE---EEEEEEEESSHH
T ss_pred CCCCCceeEecceecccccccccCcccEEEEeCCCHHHHHHHHHHHHhcC---CceEEEECCCHH
Confidence 5789999999965 342 2 899998 9999999999 88 898888876554
No 159
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.18 E-value=2.3e-06 Score=72.66 Aligned_cols=86 Identities=14% Similarity=0.223 Sum_probs=62.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCC---Cc-chhHHH----
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFI---PP-ANAFLF---- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~---p~-~D~i~~---- 213 (301)
...+|||+|||+|.+++.++.+.. .+++++|. +++++.+++ .++++++.+|+++.+ .. ||+|++
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 457999999999999998666653 68999999 777776654 357999999987632 22 899988
Q ss_pred ------HHHHHHHHh--cccCCCCcEEEEEeeee
Q 043533 214 ------KILKKRREA--IASNGERGKVIIIDIVI 239 (301)
Q Consensus 214 ------~iL~~~~~a--L~p~~~gg~l~i~e~~~ 239 (301)
.+++.+.+. |.| +++++++...
T Consensus 132 ~~g~~~~~l~~l~~~~~l~~----~~iv~ve~~~ 161 (199)
T PRK10909 132 RKGLLEETINLLEDNGWLAD----EALIYVESEV 161 (199)
T ss_pred CCChHHHHHHHHHHCCCcCC----CcEEEEEecC
Confidence 555555543 566 4577777544
No 160
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.18 E-value=2e-06 Score=81.68 Aligned_cols=109 Identities=19% Similarity=0.313 Sum_probs=74.1
Q ss_pred hhHHhhcCchHHHHHHHHhhcccccchHHHHHhhhhhc--ccCCCeEEEecCCccHHHHHHHHHC----CCCeEEEeec-
Q 043533 109 FWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQI--FEGLGSLVDVGGGNVSFSRIISEAF----PGIKCTVLDL- 181 (301)
Q Consensus 109 ~~e~~~~~~~~~~~f~~am~~~~~~~~~~~~~~~~~~~--~~~~~~vlDvGgG~G~~~~~l~~~~----P~~~~~~~Dl- 181 (301)
.||-+++|+-.-+.|.+|+.. .+. +..... -.....|+|||||+|-++...+++. -..++.+++-
T Consensus 152 tYe~fE~D~vKY~~Ye~AI~~-------al~-D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn 223 (448)
T PF05185_consen 152 TYEVFEKDPVKYDQYERAIEE-------ALK-DRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKN 223 (448)
T ss_dssp HHHHHCC-HHHHHHHHHHHHH-------HHH-HHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESS
T ss_pred cHhhHhcCHHHHHHHHHHHHH-------HHH-hhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 577777887777777777632 122 222200 0135789999999999987766553 4678999998
Q ss_pred hHHHhcCC------C-CCCeEEEeCCCCC-CCCc-chhHHH-------------HHHHHHHHhccc
Q 043533 182 PHAVANLP------E-ADNLKYIAGDMLR-FIPP-ANAFLF-------------KILKKRREAIAS 225 (301)
Q Consensus 182 p~~~~~a~------~-~~ri~~~~~D~~~-~~p~-~D~i~~-------------~iL~~~~~aL~p 225 (301)
|.++...+ . .++|+++.+|+.+ ..|+ +|+|++ .+|..+.+-|+|
T Consensus 224 ~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp 289 (448)
T PF05185_consen 224 PNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKP 289 (448)
T ss_dssp THHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEE
T ss_pred HhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCC
Confidence 44332221 1 6899999999998 7887 999987 778888889999
No 161
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.14 E-value=1.1e-05 Score=70.22 Aligned_cols=130 Identities=18% Similarity=0.211 Sum_probs=83.6
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCCc-chhHHH-----------HH
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLRFIPP-ANAFLF-----------KI 215 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~~~p~-~D~i~~-----------~i 215 (301)
...++||||.|.|..+..++..+.+ +.+-+. +.|..+.++ .+++++..|-+..-+. ||+|.+ .+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~--v~aTE~S~~Mr~rL~~-kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P~~L 170 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE--VYATEASPPMRWRLSK-KGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRPLTL 170 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce--EEeecCCHHHHHHHHh-CCCeEEehhhhhccCCceEEEeehhhhhccCCHHHH
Confidence 3578999999999999999998876 666777 667666653 4566665543433333 999988 99
Q ss_pred HHHHHHhcccCCCCcEEEEEeeeeCCCccchh----hhhhhhhhchhhccccCCc--cCCHHHHHHHHHhCCCceeEEEe
Q 043533 216 LKKRREAIASNGERGKVIIIDIVINAEEEEHE----LTETKFLFDIVMSVNATGK--ERTESEWAKLFFDAVFSHYKITP 289 (301)
Q Consensus 216 L~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~----~~~~~~~~d~~~~~~~~g~--~rt~~e~~~ll~~aGf~~~~~~~ 289 (301)
|+.++++|+| +|++++ -.++|-...... .....-.+++ .|. +-..+.+-+.|+.+||++.++..
T Consensus 171 L~~i~~~l~p---~G~lil-AvVlP~~pyVE~~~g~~~~P~e~l~~------~g~~~E~~v~~l~~v~~p~GF~v~~~tr 240 (265)
T PF05219_consen 171 LRDIRRALKP---NGRLIL-AVVLPFRPYVEFGGGKSNRPSELLPV------KGATFEEQVSSLVNVFEPAGFEVERWTR 240 (265)
T ss_pred HHHHHHHhCC---CCEEEE-EEEecccccEEcCCCCCCCchhhcCC------CCCcHHHHHHHHHHHHHhcCCEEEEEec
Confidence 9999999999 776655 344443221100 0000011111 221 11123344889999999999988
Q ss_pred cC
Q 043533 290 IF 291 (301)
Q Consensus 290 ~~ 291 (301)
.|
T Consensus 241 ~P 242 (265)
T PF05219_consen 241 LP 242 (265)
T ss_pred cC
Confidence 75
No 162
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=3.8e-06 Score=70.40 Aligned_cols=94 Identities=16% Similarity=0.246 Sum_probs=73.5
Q ss_pred HHHhhhhhcccCCCeEEEecCCccHHHHHHHHH--CCCCeEEEeec-hHHHhcCCC----------------CCCeEEEe
Q 043533 138 VVKSECKQIFEGLGSLVDVGGGNVSFSRIISEA--FPGIKCTVLDL-PHAVANLPE----------------ADNLKYIA 198 (301)
Q Consensus 138 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~--~P~~~~~~~Dl-p~~~~~a~~----------------~~ri~~~~ 198 (301)
++ +.++..+...-+.||||+|+|.++..+++. .|....+++|+ |++++.+++ ..++.++.
T Consensus 72 ~l-e~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivv 150 (237)
T KOG1661|consen 72 AL-EYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVV 150 (237)
T ss_pred HH-HHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEe
Confidence 44 555444677889999999999999988864 34444588998 888876653 46789999
Q ss_pred CCCCCCCC---cchhHHH-----HHHHHHHHhcccCCCCcEEEEE
Q 043533 199 GDMLRFIP---PANAFLF-----KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 199 ~D~~~~~p---~~D~i~~-----~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
||-..-.+ .||.|.+ ++.+++...|++ ||+++|-
T Consensus 151 GDgr~g~~e~a~YDaIhvGAaa~~~pq~l~dqL~~---gGrllip 192 (237)
T KOG1661|consen 151 GDGRKGYAEQAPYDAIHVGAAASELPQELLDQLKP---GGRLLIP 192 (237)
T ss_pred CCccccCCccCCcceEEEccCccccHHHHHHhhcc---CCeEEEe
Confidence 99887433 2999998 999999999999 8988873
No 163
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.08 E-value=6.2e-06 Score=71.33 Aligned_cols=133 Identities=16% Similarity=0.176 Sum_probs=83.5
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CC-CeEEEeCCCCC--C--CCc--chhHHH---
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----AD-NLKYIAGDMLR--F--IPP--ANAFLF--- 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~-ri~~~~~D~~~--~--~p~--~D~i~~--- 213 (301)
...+||||||.|.+...+|+++|+.-+++++. ..++..+.+ .- ++.++.+|+.. + .|. .|-|.+
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 36899999999999999999999999999999 444333322 33 89999998754 1 222 343333
Q ss_pred ----------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchh-hhhh-hhhhchhhccc------cCCccCC
Q 043533 214 ----------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHE-LTET-KFLFDIVMSVN------ATGKERT 269 (301)
Q Consensus 214 ----------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~-~~~~-~~~~d~~~~~~------~~g~~rt 269 (301)
..|+.+.+.|+| ||.|.+..- ....-.- +... .....+..... .....+.
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~---gG~l~~aTD---~~~y~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKP---GGVLHFATD---NEEYFEWMMLEVLEHPPFLKFESEDLHYNLPPPDNNP 202 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccC---CCEEEEEec---CHHHHHHHHHHHHhcchhhhccccccccccccccCCC
Confidence 899999999999 886665431 1111100 0000 00000111111 1112356
Q ss_pred HHHHHHHHHhCCCceeEEE
Q 043533 270 ESEWAKLFFDAVFSHYKIT 288 (301)
Q Consensus 270 ~~e~~~ll~~aGf~~~~~~ 288 (301)
..+|++-....|-.+....
T Consensus 203 ~T~yE~k~~~~g~~i~~l~ 221 (227)
T COG0220 203 VTEYEQKFRRLGHPVYDLE 221 (227)
T ss_pred CcHHHHHHHhCCCceEEEE
Confidence 6889999999998877654
No 164
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.07 E-value=1.8e-05 Score=69.48 Aligned_cols=128 Identities=18% Similarity=0.283 Sum_probs=71.1
Q ss_pred CCCeEEEecCCccH--HHHHHH-HHCCCCeEEEeec-hHHHhcCCC----CCC--eEEEeCCCCCC---CC--c----ch
Q 043533 149 GLGSLVDVGGGNVS--FSRIIS-EAFPGIKCTVLDL-PHAVANLPE----ADN--LKYIAGDMLRF---IP--P----AN 209 (301)
Q Consensus 149 ~~~~vlDvGgG~G~--~~~~l~-~~~P~~~~~~~Dl-p~~~~~a~~----~~r--i~~~~~D~~~~---~p--~----~D 209 (301)
+.+.+||||||.-. ...+++ +..|+.+++-+|. |-++.+++. .++ ..++.+|+.+| +. . .|
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 67899999999653 445555 4589999999999 999998885 344 88999999874 22 1 22
Q ss_pred h-----HHH--------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCH
Q 043533 210 A-----FLF--------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTE 270 (301)
Q Consensus 210 ~-----i~~--------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~ 270 (301)
+ +++ .+++.++++|.| |+.|.|.....+..... . ....++.-.....+..||.
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lap---GS~L~ish~t~d~~p~~--~---~~~~~~~~~~~~~~~~Rs~ 219 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAP---GSYLAISHATDDGAPER--A---EALEAVYAQAGSPGRPRSR 219 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-T---T-EEEEEEEB-TTSHHH--H---HHHHHHHHHCCS----B-H
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCC---CceEEEEecCCCCCHHH--H---HHHHHHHHcCCCCceecCH
Confidence 1 111 999999999999 88888877754432211 1 1122222222245678999
Q ss_pred HHHHHHHHhCCCceeE
Q 043533 271 SEWAKLFFDAVFSHYK 286 (301)
Q Consensus 271 ~e~~~ll~~aGf~~~~ 286 (301)
+|+.++|. ||+.++
T Consensus 220 ~ei~~~f~--g~elve 233 (267)
T PF04672_consen 220 EEIAAFFD--GLELVE 233 (267)
T ss_dssp HHHHHCCT--TSEE-T
T ss_pred HHHHHHcC--CCccCC
Confidence 99999998 887664
No 165
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.07 E-value=1.9e-06 Score=75.74 Aligned_cols=87 Identities=15% Similarity=0.248 Sum_probs=68.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---C-CC-cchh
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----------ADNLKYIAGDMLR---F-IP-PANA 210 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----------~~ri~~~~~D~~~---~-~p-~~D~ 210 (301)
.+++++||=||+|.|..+..+++..+-.+++++|+ |.|++.+++ .+|++++.+|... . .. .||+
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv 153 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV 153 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence 35689999999999999999997776779999999 899888774 4799999999754 2 23 3888
Q ss_pred HHH---------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 211 FLF---------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 211 i~~---------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
|++ ..++.++++|+| ||.+++.-
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~---~Gv~v~~~ 191 (246)
T PF01564_consen 154 IIVDLTDPDGPAPNLFTREFYQLCKRRLKP---DGVLVLQA 191 (246)
T ss_dssp EEEESSSTTSCGGGGSSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred EEEeCCCCCCCcccccCHHHHHHHHhhcCC---CcEEEEEc
Confidence 876 899999999999 66554443
No 166
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.06 E-value=1.9e-05 Score=68.44 Aligned_cols=131 Identities=13% Similarity=0.079 Sum_probs=81.4
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHh-cCCCCCCeE-EEeCCCCC----CC----CcchhHHH---H
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVA-NLPEADNLK-YIAGDMLR----FI----PPANAFLF---K 214 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~-~a~~~~ri~-~~~~D~~~----~~----p~~D~i~~---~ 214 (301)
...++||+|||+|.++..+++. +..+++++|. +.++. ..++.+|+. +...|+.. ++ +.+|+.++ .
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~~ 153 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLIS 153 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehHh
Confidence 4578999999999999999987 3568999999 53444 455566654 33335442 12 23787776 8
Q ss_pred HHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEecC
Q 043533 215 ILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIF 291 (301)
Q Consensus 215 iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 291 (301)
+|..+.+.|+| |-.++++.+-..-.+.. ........|- ....+..+++..++.+.||+...+.+.+
T Consensus 154 ~l~~i~~~l~~---~~~~~L~KPqFE~~~~~--~~~~giv~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 154 ILPELDLLLNP---NDLTLLFKPQFEAGREK--KNKKGVVRDK------EAIALALHKVIDKGESPDFQEKKIIFSL 219 (228)
T ss_pred HHHHHHHHhCc---CeEEEEcChHhhhcHhh--cCcCCeecCH------HHHHHHHHHHHHHHHcCCCeEeeEEECC
Confidence 99999999998 55555554322221110 0000001111 1112345667788888999998877654
No 167
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=6.5e-06 Score=68.15 Aligned_cols=117 Identities=13% Similarity=0.123 Sum_probs=72.6
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCCcchhHHHHHHHHHHHh
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLRFIPPANAFLFKILKKRREA 222 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~~~p~~D~i~~~iL~~~~~a 222 (301)
..++|+|+|||||.+++..+-..|. +++++|+ |+.++.+++ ..++.|+.+|..+.-..+|.++|
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~-~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvim--------- 114 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGAS-RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIM--------- 114 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCc-EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEE---------
Confidence 3578999999999999999988764 8999999 999988876 56899999998542222443322
Q ss_pred cccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEE
Q 043533 223 IASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKIT 288 (301)
Q Consensus 223 L~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 288 (301)
.| |=|.. . ...+.++. ...++....+..=++.-+.+-+++..+++|+++....
T Consensus 115 -NP--PFG~~-----~---rhaDr~Fl--~~Ale~s~vVYsiH~a~~~~f~~~~~~~~G~~v~~~~ 167 (198)
T COG2263 115 -NP--PFGSQ-----R---RHADRPFL--LKALEISDVVYSIHKAGSRDFVEKFAADLGGTVTHIE 167 (198)
T ss_pred -CC--CCccc-----c---ccCCHHHH--HHHHHhhheEEEeeccccHHHHHHHHHhcCCeEEEEE
Confidence 22 11211 0 00111111 1122222222211122278888899999998887653
No 168
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.05 E-value=4.7e-06 Score=78.15 Aligned_cols=86 Identities=7% Similarity=0.110 Sum_probs=65.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C-CCeEEEeCCCCCCC------C-cchh
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------A-DNLKYIAGDMLRFI------P-PANA 210 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~-~ri~~~~~D~~~~~------p-~~D~ 210 (301)
+...++|||+|||+|.++...+.. ...+++.+|+ +.+++.+++ . ++++++.+|+++.+ . .||+
T Consensus 218 ~~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDl 296 (396)
T PRK15128 218 YVENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_pred hcCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence 345689999999999998876643 3458999999 888887764 2 47999999987621 2 2898
Q ss_pred HHH--------------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 211 FLF--------------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 211 i~~--------------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
|++ .+++.+.+.|+| ||.++.+.
T Consensus 297 VilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~---gG~lv~~s 339 (396)
T PRK15128 297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNP---GGILLTFS 339 (396)
T ss_pred EEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCC---CeEEEEEe
Confidence 887 455667889999 78777655
No 169
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.04 E-value=5.4e-05 Score=67.01 Aligned_cols=84 Identities=10% Similarity=0.153 Sum_probs=69.0
Q ss_pred CCCeEEEecCCccH----HHHHHHHHCC-----CCeEEEeec-hHHHhcCCC----------------------------
Q 043533 149 GLGSLVDVGGGNVS----FSRIISEAFP-----GIKCTVLDL-PHAVANLPE---------------------------- 190 (301)
Q Consensus 149 ~~~~vlDvGgG~G~----~~~~l~~~~P-----~~~~~~~Dl-p~~~~~a~~---------------------------- 190 (301)
+.-+|.-.||+||. +++.|.+..| ..++++.|+ ..+++.|+.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 46799999999996 6666777776 478999999 888888863
Q ss_pred -------CCCeEEEeCCCCC-C-CCc-chhHHH-------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 191 -------ADNLKYIAGDMLR-F-IPP-ANAFLF-------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 191 -------~~ri~~~~~D~~~-~-~p~-~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
...|.|..+|..+ + .+. +|+|+| +++++.+..|+| ||.|+|=
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~---gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKP---GGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCC---CCEEEEc
Confidence 2468999999988 4 455 999998 999999999999 8877763
No 170
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.04 E-value=4.3e-06 Score=84.16 Aligned_cols=84 Identities=10% Similarity=0.082 Sum_probs=66.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C-CCeEEEeCCCCCC---CCc-chhHHH-
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------A-DNLKYIAGDMLRF---IPP-ANAFLF- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~-~ri~~~~~D~~~~---~p~-~D~i~~- 213 (301)
...++|||+|||+|.++..+++.. ..+++.+|+ +.+++.+++ . ++++++.+|+++. .+. ||+|++
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 446899999999999999999863 447999999 888887775 2 5899999998762 233 888876
Q ss_pred ---------------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 214 ---------------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 214 ---------------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
.+++.+.+.|+| ||.+++.
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~---gG~l~~~ 655 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRP---GGTLYFS 655 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCC---CCEEEEE
Confidence 478888999999 7866543
No 171
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.03 E-value=2.3e-05 Score=66.85 Aligned_cols=119 Identities=13% Similarity=0.035 Sum_probs=88.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCC---CCCc--chhHH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE--------ADNLKYIAGDMLR---FIPP--ANAFL 212 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~--------~~ri~~~~~D~~~---~~p~--~D~i~ 212 (301)
.+...+|||...|-|.++++.+++. ..+++-++- |.|++.|.- ..+|+++.||..+ .+++ +|+|+
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 4567899999999999999999985 347888887 999988873 4579999999876 4665 88776
Q ss_pred H--------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHH
Q 043533 213 F--------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFF 278 (301)
Q Consensus 213 ~--------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~ 278 (301)
= .+.+++++.|+| ||+++-.-- +++. .++-.|+ .....+.|+
T Consensus 211 HDPPRfS~AgeLYseefY~El~RiLkr---gGrlFHYvG---~Pg~------ryrG~d~------------~~gVa~RLr 266 (287)
T COG2521 211 HDPPRFSLAGELYSEEFYRELYRILKR---GGRLFHYVG---NPGK------RYRGLDL------------PKGVAERLR 266 (287)
T ss_pred eCCCccchhhhHhHHHHHHHHHHHcCc---CCcEEEEeC---CCCc------ccccCCh------------hHHHHHHHH
Confidence 4 899999999999 898764431 1111 0112222 345688999
Q ss_pred hCCCceeEEEec
Q 043533 279 DAVFSHYKITPI 290 (301)
Q Consensus 279 ~aGf~~~~~~~~ 290 (301)
++||.+++...-
T Consensus 267 ~vGF~~v~~~~~ 278 (287)
T COG2521 267 RVGFEVVKKVRE 278 (287)
T ss_pred hcCceeeeeehh
Confidence 999998876544
No 172
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.03 E-value=6.5e-06 Score=72.20 Aligned_cols=91 Identities=12% Similarity=0.025 Sum_probs=73.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC--C-C-------Cc
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR--F-I-------PP 207 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~--~-~-------p~ 207 (301)
..+.++||+||+++|.-+..+++.. |+.+++.+|. |+..+.|++ .++|+++.||+.+ + + ..
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 5668999999999999999999886 4789999999 777777664 6899999999865 2 1 23
Q ss_pred chhHHH--------HHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 043533 208 ANAFLF--------KILKKRREAIASNGERGKVIIIDIVINA 241 (301)
Q Consensus 208 ~D~i~~--------~iL~~~~~aL~p~~~gg~l~i~e~~~~~ 241 (301)
||+|++ ..+..+.+.|+| | .++|+|.++..
T Consensus 157 fD~iFiDadK~~Y~~y~~~~l~ll~~---G-Gviv~DNvl~~ 194 (247)
T PLN02589 157 FDFIFVDADKDNYINYHKRLIDLVKV---G-GVIGYDNTLWN 194 (247)
T ss_pred ccEEEecCCHHHhHHHHHHHHHhcCC---C-eEEEEcCCCCC
Confidence 999998 788888899999 4 56777766544
No 173
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.02 E-value=5.1e-06 Score=70.39 Aligned_cols=84 Identities=11% Similarity=0.220 Sum_probs=59.2
Q ss_pred CCCeEEEecCCccH----HHHHHHHH----CC-CCeEEEeec-hHHHhcCCC----------------------------
Q 043533 149 GLGSLVDVGGGNVS----FSRIISEA----FP-GIKCTVLDL-PHAVANLPE---------------------------- 190 (301)
Q Consensus 149 ~~~~vlDvGgG~G~----~~~~l~~~----~P-~~~~~~~Dl-p~~~~~a~~---------------------------- 190 (301)
..-+|...||++|. +++.+.+. .+ +.++++.|+ +.+++.|++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45799999999997 44444441 22 468999999 888888862
Q ss_pred ------CCCeEEEeCCCCC-CCC-c-chhHHH-------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 191 ------ADNLKYIAGDMLR-FIP-P-ANAFLF-------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 191 ------~~ri~~~~~D~~~-~~p-~-~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
..+|+|..+|..+ +.+ . +|+|+| +++++++++|+| ||.|++-
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~p---gG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKP---GGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEE---EEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCC---CCEEEEe
Confidence 3679999999998 322 3 999987 999999999999 7777664
No 174
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.01 E-value=8.8e-06 Score=73.33 Aligned_cols=74 Identities=20% Similarity=0.369 Sum_probs=57.8
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CC
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FI 205 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~ 205 (301)
+..++ +..+ .....+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ ++
T Consensus 25 ~~~Iv-~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~ 99 (294)
T PTZ00338 25 LDKIV-EKAA--IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF 99 (294)
T ss_pred HHHHH-HhcC--CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc
Confidence 44566 6555 6667899999999999999999875 47999999 778776653 3689999999987 56
Q ss_pred CcchhHHH
Q 043533 206 PPANAFLF 213 (301)
Q Consensus 206 p~~D~i~~ 213 (301)
+.+|+++.
T Consensus 100 ~~~d~Vva 107 (294)
T PTZ00338 100 PYFDVCVA 107 (294)
T ss_pred cccCEEEe
Confidence 55666554
No 175
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.98 E-value=6.6e-06 Score=74.24 Aligned_cols=81 Identities=16% Similarity=0.190 Sum_probs=63.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEeCCCCC-CCC-c-chhHHH-----
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPE-------ADNLKYIAGDMLR-FIP-P-ANAFLF----- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~-------~~ri~~~~~D~~~-~~p-~-~D~i~~----- 213 (301)
..+.|||||||+|.+++--+++. ..++.++|-.++++.|.+ .+.|+++.|...+ .+| + .|+|+.
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 46899999999999999999998 668999999888887775 5679999999887 677 3 898876
Q ss_pred -----HHHHHH----HHhcccCCCCcEEE
Q 043533 214 -----KILKKR----REAIASNGERGKVI 233 (301)
Q Consensus 214 -----~iL~~~----~~aL~p~~~gg~l~ 233 (301)
.+|..+ -+.|+| ||.++
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~---~G~i~ 164 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKE---GGLIY 164 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCC---CceEc
Confidence 333333 367888 77443
No 176
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.97 E-value=1.5e-05 Score=72.70 Aligned_cols=63 Identities=19% Similarity=0.185 Sum_probs=49.9
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-C--CCc-chhHHH
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-F--IPP-ANAFLF 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~--~p~-~D~i~~ 213 (301)
...+|||+|||+|.++..+++. ..+++++|. +++++.|++ -++++|+.+|+.+ . ... +|+|++
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~ 246 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLV 246 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEE
Confidence 3589999999999999999985 468999999 888887764 3579999999864 2 112 677665
No 177
>PRK04148 hypothetical protein; Provisional
Probab=97.95 E-value=1.7e-05 Score=62.63 Aligned_cols=92 Identities=16% Similarity=0.160 Sum_probs=62.9
Q ss_pred HHHhhhhhcccCCCeEEEecCCccH-HHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCCc----chhH
Q 043533 138 VVKSECKQIFEGLGSLVDVGGGNVS-FSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLRFIPP----ANAF 211 (301)
Q Consensus 138 ~~~~~~~~~~~~~~~vlDvGgG~G~-~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~~~p~----~D~i 211 (301)
+. +.+. -.+..+++|||||+|. ++..|.+. +..++++|. |..++.+++ ..+.++.+|.|+|-++ +|+|
T Consensus 8 l~-~~~~--~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~-~~~~~v~dDlf~p~~~~y~~a~li 81 (134)
T PRK04148 8 IA-ENYE--KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKK-LGLNAFVDDLFNPNLEIYKNAKLI 81 (134)
T ss_pred HH-Hhcc--cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHH-hCCeEEECcCCCCCHHHHhcCCEE
Confidence 44 5454 2345789999999996 87778765 578999999 887777763 4578999999996332 7888
Q ss_pred HH-----HHHHHHHHhcccCCCCcEEEEEee
Q 043533 212 LF-----KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 212 ~~-----~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
.. .+-..+.+.-+.. |.-++|...
T Consensus 82 ysirpp~el~~~~~~la~~~--~~~~~i~~l 110 (134)
T PRK04148 82 YSIRPPRDLQPFILELAKKI--NVPLIIKPL 110 (134)
T ss_pred EEeCCCHHHHHHHHHHHHHc--CCCEEEEcC
Confidence 87 4444444444431 445655543
No 178
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.92 E-value=2.6e-05 Score=63.24 Aligned_cols=99 Identities=15% Similarity=0.175 Sum_probs=78.0
Q ss_pred chHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC-C-----
Q 043533 134 MTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEA-FPGIKCTVLDL-PHAVANLPE-ADNLKYIAGDMLR-F----- 204 (301)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~~D~~~-~----- 204 (301)
.++.+. +.++ +..+..|+++|.|||.++.+++++ .++-..+.++. ++-..+..+ .+.++++.||.++ .
T Consensus 36 lA~~M~-s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e 112 (194)
T COG3963 36 LARKMA-SVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGE 112 (194)
T ss_pred HHHHHH-hccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhh
Confidence 345566 7777 777889999999999999999987 45667888888 666665554 5677799999886 3
Q ss_pred CCc--chhHHH-------------HHHHHHHHhcccCCCCcEEEEEeee
Q 043533 205 IPP--ANAFLF-------------KILKKRREAIASNGERGKVIIIDIV 238 (301)
Q Consensus 205 ~p~--~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~ 238 (301)
.+. +|.|++ ++|+++...|++ ||.++-+..-
T Consensus 113 ~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~---gg~lvqftYg 158 (194)
T COG3963 113 HKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPA---GGPLVQFTYG 158 (194)
T ss_pred cCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCC---CCeEEEEEec
Confidence 232 898887 999999999999 8888877764
No 179
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.89 E-value=3.6e-05 Score=68.92 Aligned_cols=83 Identities=10% Similarity=0.119 Sum_probs=64.5
Q ss_pred CCeEEEecCCccH----HHHHHHHHCC----CCeEEEeec-hHHHhcCCC------------------------------
Q 043533 150 LGSLVDVGGGNVS----FSRIISEAFP----GIKCTVLDL-PHAVANLPE------------------------------ 190 (301)
Q Consensus 150 ~~~vlDvGgG~G~----~~~~l~~~~P----~~~~~~~Dl-p~~~~~a~~------------------------------ 190 (301)
.-+|...||+||. +++.+.+..+ +.++++.|+ +.+++.|+.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4699999999997 4444555433 478999999 888887763
Q ss_pred -------CCCeEEEeCCCCC-CCC--c-chhHHH-------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 191 -------ADNLKYIAGDMLR-FIP--P-ANAFLF-------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 191 -------~~ri~~~~~D~~~-~~p--~-~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
..+|+|..+|..+ ++| . +|+|++ +++++++++|+| ||.|++=
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~p---gG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKP---DGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCC---CcEEEEe
Confidence 1458999999988 554 3 999998 999999999999 8866553
No 180
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.89 E-value=6.6e-06 Score=70.14 Aligned_cols=100 Identities=14% Similarity=0.133 Sum_probs=60.5
Q ss_pred HHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------------CCCeEEEeCC
Q 043533 137 FVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE---------------ADNLKYIAGD 200 (301)
Q Consensus 137 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~---------------~~ri~~~~~D 200 (301)
.++ +.++ +.....++|||||.|......+-.++--+++++++ +...+.|.. ..++++..+|
T Consensus 33 ~il-~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd 109 (205)
T PF08123_consen 33 KIL-DELN--LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD 109 (205)
T ss_dssp HHH-HHTT----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred HHH-HHhC--CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence 355 5555 67778999999999999998887775445999999 554443321 4678999999
Q ss_pred CCC-CC-----CcchhHHH----------HHHHHHHHhcccCCCCcEEEEEeeeeCCC
Q 043533 201 MLR-FI-----PPANAFLF----------KILKKRREAIASNGERGKVIIIDIVINAE 242 (301)
Q Consensus 201 ~~~-~~-----p~~D~i~~----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~ 242 (301)
|.+ +. .++|+|++ .-|++....||+ |.+++-...+.+..
T Consensus 110 fl~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~---G~~IIs~~~~~~~~ 164 (205)
T PF08123_consen 110 FLDPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKP---GARIISTKPFCPRR 164 (205)
T ss_dssp TTTHHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-T---T-EEEESS-SS-TT
T ss_pred ccccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCC---CCEEEECCCcCCCC
Confidence 987 32 23777776 555677778888 77766555555443
No 181
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.83 E-value=2.2e-05 Score=76.05 Aligned_cols=85 Identities=11% Similarity=0.125 Sum_probs=64.1
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec--hHHHhcCCC-----CCCeEEEeCCCCC---CCCc--chhHHH---
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL--PHAVANLPE-----ADNLKYIAGDMLR---FIPP--ANAFLF--- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl--p~~~~~a~~-----~~ri~~~~~D~~~---~~p~--~D~i~~--- 213 (301)
+...+||||||.|.++..+++.+|+..++++|. +.+...++. -.++.++.+|+.. .+|. .|.|++
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 467899999999999999999999999999999 333322221 3577788777632 3443 555554
Q ss_pred ----------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 ----------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 ----------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
..|+.+++.|+| ||.+.+..
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~---gG~i~~~T 462 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKD---NGNLVFAS 462 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCC---CCEEEEEc
Confidence 899999999999 88776543
No 182
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.82 E-value=1.2e-05 Score=76.55 Aligned_cols=76 Identities=17% Similarity=0.332 Sum_probs=57.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC-----C-Cc-chhHH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRF-----I-PP-ANAFL 212 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~-----~-p~-~D~i~ 212 (301)
..+..+|||+|||+|.++..+++.. .+++++|. +++++.|++ -++++|+.+|+.+. . .. +|+|+
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 4566899999999999999999875 47999999 888887775 35899999998541 1 12 67777
Q ss_pred H---------HHHHHHHHhccc
Q 043533 213 F---------KILKKRREAIAS 225 (301)
Q Consensus 213 ~---------~iL~~~~~aL~p 225 (301)
+ .+++.+.+ ++|
T Consensus 368 ~dPPr~G~~~~~l~~l~~-l~~ 388 (431)
T TIGR00479 368 LDPPRKGCAAEVLRTIIE-LKP 388 (431)
T ss_pred ECcCCCCCCHHHHHHHHh-cCC
Confidence 6 55555443 566
No 183
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.80 E-value=1.5e-05 Score=74.47 Aligned_cols=114 Identities=18% Similarity=0.174 Sum_probs=76.0
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC---C-CcchhHHH----
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRF---I-PPANAFLF---- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~---~-p~~D~i~~---- 213 (301)
...+|||+|||+|.++..++.. ..+++++|. +.+++.|++ -++++|+.+|+.+. . ..+|+|++
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 3579999999999999999965 468999999 888877764 34799999998642 1 22787776
Q ss_pred -----HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEE
Q 043533 214 -----KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKIT 288 (301)
Q Consensus 214 -----~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 288 (301)
.+++.+. .++| ++++.++. ++. ....|+.. + .||+..++.
T Consensus 311 ~G~~~~~l~~l~-~~~p----~~ivyvsc---~p~--------TlaRDl~~----------------L---~gy~l~~~~ 355 (374)
T TIGR02085 311 RGIGKELCDYLS-QMAP----KFILYSSC---NAQ--------TMAKDIAE----------------L---SGYQIERVQ 355 (374)
T ss_pred CCCcHHHHHHHH-hcCC----CeEEEEEe---CHH--------HHHHHHHH----------------h---cCceEEEEE
Confidence 5555554 3566 34555443 111 12234332 2 489999988
Q ss_pred ecC--CceeEEEE
Q 043533 289 PIF--GMKSLIEV 299 (301)
Q Consensus 289 ~~~--~~~~~i~a 299 (301)
++. ..++-||.
T Consensus 356 ~~DmFPqT~HvE~ 368 (374)
T TIGR02085 356 LFDMFPHTSHYEV 368 (374)
T ss_pred EeccCCCCCcEEE
Confidence 874 34566664
No 184
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.79 E-value=1.8e-05 Score=65.85 Aligned_cols=90 Identities=12% Similarity=0.138 Sum_probs=58.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC---------CCCeEEEeCCCCCCC------Cc-chh
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPE---------ADNLKYIAGDMLRFI------PP-ANA 210 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~---------~~ri~~~~~D~~~~~------p~-~D~ 210 (301)
.....+||+||||+|..++.+++..+..++++-|.+++++..+. ..++++...|+-++. +. ||+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 45578999999999999999999977889999999767665442 467888888876522 22 676
Q ss_pred HHH-----------HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 211 FLF-----------KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 211 i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
|+. .+++.+.+.|+| +|.+++.....
T Consensus 123 IlasDv~Y~~~~~~~L~~tl~~ll~~---~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYDEELFEPLVRTLKRLLKP---NGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S-GGGHHHHHHHHHHHBTT----TTEEEEEE-S
T ss_pred EEEecccchHHHHHHHHHHHHHHhCC---CCEEEEEeCEe
Confidence 665 888999999999 67666665544
No 185
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.78 E-value=1.9e-05 Score=66.61 Aligned_cols=86 Identities=14% Similarity=0.120 Sum_probs=62.2
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C--C-c-chhHHH
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRF---I--P-P-ANAFLF 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~---~--p-~-~D~i~~ 213 (301)
...+|||++||+|.++.+++.+... +++.+|. +.+++.+++ .++++++.+|.++. . . . +|+|++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 3579999999999999999999753 8999999 777766553 35789999998541 1 1 2 677776
Q ss_pred ----------HHHHHHHH--hcccCCCCcEEEEEeeee
Q 043533 214 ----------KILKKRRE--AIASNGERGKVIIIDIVI 239 (301)
Q Consensus 214 ----------~iL~~~~~--aL~p~~~gg~l~i~e~~~ 239 (301)
.++..+.+ .+++ +.++|+|...
T Consensus 128 DPPy~~~~~~~~l~~l~~~~~l~~----~~iiv~E~~~ 161 (189)
T TIGR00095 128 DPPFFNGALQALLELCENNWILED----TVLIVVEEDR 161 (189)
T ss_pred CcCCCCCcHHHHHHHHHHCCCCCC----CeEEEEEecC
Confidence 55555543 3555 5688888644
No 186
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.75 E-value=4.8e-05 Score=66.34 Aligned_cols=75 Identities=23% Similarity=0.438 Sum_probs=61.3
Q ss_pred chHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-C
Q 043533 134 MTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-F 204 (301)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~ 204 (301)
+++.++ +..+ ......||+||.|||.++..|+++ +.+++++++ |.++++..+ ....+++.||+++ +
T Consensus 46 v~~~I~-~ka~--~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 46 VIDQIV-EKAD--LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD 120 (315)
T ss_pred HHHHHH-hccC--CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC
Confidence 345566 6656 777889999999999999999998 468999998 887776654 4789999999999 8
Q ss_pred CCcchhHHH
Q 043533 205 IPPANAFLF 213 (301)
Q Consensus 205 ~p~~D~i~~ 213 (301)
+|-+|.++.
T Consensus 121 ~P~fd~cVs 129 (315)
T KOG0820|consen 121 LPRFDGCVS 129 (315)
T ss_pred Ccccceeec
Confidence 888887665
No 187
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.71 E-value=0.00012 Score=62.51 Aligned_cols=115 Identities=17% Similarity=0.310 Sum_probs=76.2
Q ss_pred EEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCc---chhHHH--------
Q 043533 153 LVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIPP---ANAFLF-------- 213 (301)
Q Consensus 153 vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p~---~D~i~~-------- 213 (301)
|.||||-+|.+.+.|++.+.--+++..|+ +.-++.|++ .++|++.-+|-+++++. .|.|++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~lI 80 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGELI 80 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HHHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHHHH
Confidence 68999999999999999998889999999 666666653 68999999998886543 677666
Q ss_pred -HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEec--
Q 043533 214 -KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPI-- 290 (301)
Q Consensus 214 -~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~-- 290 (301)
.||.+....++. ..++++ - . ......+++||.+.||.++.-.-+
T Consensus 81 ~~ILe~~~~~~~~---~~~lIL-q--------------------------P---~~~~~~LR~~L~~~gf~I~~E~lv~e 127 (205)
T PF04816_consen 81 IEILEAGPEKLSS---AKRLIL-Q--------------------------P---NTHAYELRRWLYENGFEIIDEDLVEE 127 (205)
T ss_dssp HHHHHHTGGGGTT-----EEEE-E--------------------------E---SS-HHHHHHHHHHTTEEEEEEEEEEE
T ss_pred HHHHHhhHHHhcc---CCeEEE-e--------------------------C---CCChHHHHHHHHHCCCEEEEeEEEeE
Confidence 444444333332 112221 1 1 114566799999999999976655
Q ss_pred CC-ceeEEEEe
Q 043533 291 FG-MKSLIEVY 300 (301)
Q Consensus 291 ~~-~~~~i~a~ 300 (301)
.+ ++.+|.+.
T Consensus 128 ~~~~YeIi~~~ 138 (205)
T PF04816_consen 128 NGRFYEIIVAE 138 (205)
T ss_dssp TTEEEEEEEEE
T ss_pred CCEEEEEEEEE
Confidence 23 67777765
No 188
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.68 E-value=7.3e-05 Score=68.44 Aligned_cols=84 Identities=14% Similarity=0.079 Sum_probs=59.6
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------------C----CCeEEEeCCCCCC-----C-
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------------A----DNLKYIAGDMLRF-----I- 205 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------------~----~ri~~~~~D~~~~-----~- 205 (301)
...+|||+|||-|.=+.--.+..+ -..+++|+ +..++.|++ . -...|+.+|.+.. +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i-~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI-KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCC-CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 568999999998886666666543 37999999 677776653 1 2356788887742 1
Q ss_pred -C--cchhHHH---------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 206 -P--PANAFLF---------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 206 -p--~~D~i~~---------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
+ .||+|-+ .+|+++.+.|+| ||.++..-
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~---GG~FIgT~ 186 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKP---GGYFIGTT 186 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCC---CCEEEEEe
Confidence 2 2888776 799999999999 88777653
No 189
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.64 E-value=0.00022 Score=60.85 Aligned_cols=130 Identities=13% Similarity=0.124 Sum_probs=87.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCC--eEEEeCCCCC-CCCc--chhHHH------
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE--ADN--LKYIAGDMLR-FIPP--ANAFLF------ 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~--~~r--i~~~~~D~~~-~~p~--~D~i~~------ 213 (301)
..+..++|||||.|.....|..+.- -+.+.+|. -.|++.++. .+. .+...+|-.. ++.+ +|+|+.
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~v-ekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGV-EKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcch-hheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhh
Confidence 4478999999999999999998863 27888998 788888876 233 3445566544 5655 899987
Q ss_pred -----HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCc-----cC-CHHHHHHHHHhCCC
Q 043533 214 -----KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGK-----ER-TESEWAKLFFDAVF 282 (301)
Q Consensus 214 -----~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~-----~r-t~~e~~~ll~~aGf 282 (301)
.-+.+|+.+||| +| ++|..+.-.+.-.+ .+...-+.-+-.-+|- +. ...++-.+|..|||
T Consensus 150 ~NdLPg~m~~ck~~lKP---Dg-~FiasmlggdTLyE-----LR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF 220 (325)
T KOG2940|consen 150 TNDLPGSMIQCKLALKP---DG-LFIASMLGGDTLYE-----LRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGF 220 (325)
T ss_pred hccCchHHHHHHHhcCC---Cc-cchhHHhccccHHH-----HHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCc
Confidence 888999999999 56 55555544443322 2222222211112221 11 23578899999999
Q ss_pred ceeEE
Q 043533 283 SHYKI 287 (301)
Q Consensus 283 ~~~~~ 287 (301)
....+
T Consensus 221 ~m~tv 225 (325)
T KOG2940|consen 221 SMLTV 225 (325)
T ss_pred cccee
Confidence 97765
No 190
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.63 E-value=5.7e-05 Score=63.16 Aligned_cols=87 Identities=16% Similarity=0.176 Sum_probs=63.3
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCe---------EEEeec-hHHHhcCCC-------CCCeEEEe
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIK---------CTVLDL-PHAVANLPE-------ADNLKYIA 198 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~---------~~~~Dl-p~~~~~a~~-------~~ri~~~~ 198 (301)
..++ .... +.+...|+|-=||+|.++++.+...++.. +++.|+ +.+++.++. ...|.+..
T Consensus 18 ~~ll-~la~--~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~ 94 (179)
T PF01170_consen 18 AALL-NLAG--WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQ 94 (179)
T ss_dssp HHHH-HHTT----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE
T ss_pred HHHH-HHhC--CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEe
Confidence 3355 5555 56678999999999999999888777766 999999 888877764 46789999
Q ss_pred CCCCC-CCC-c-chhHHH-------------------HHHHHHHHhccc
Q 043533 199 GDMLR-FIP-P-ANAFLF-------------------KILKKRREAIAS 225 (301)
Q Consensus 199 ~D~~~-~~p-~-~D~i~~-------------------~iL~~~~~aL~p 225 (301)
.|+.+ +++ . +|+|++ ++++++.+.+++
T Consensus 95 ~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 95 WDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp --GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred cchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 99987 633 3 787776 777888888887
No 191
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.54 E-value=0.00017 Score=65.48 Aligned_cols=84 Identities=17% Similarity=0.360 Sum_probs=66.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-------------CCCeEEEeCCCCCC---CCc-
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPG-IKCTVLDL-PHAVANLPE-------------ADNLKYIAGDMLRF---IPP- 207 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~-~~~~~~Dl-p~~~~~a~~-------------~~ri~~~~~D~~~~---~p~- 207 (301)
..+.+++|-+|||.|--+.++++ ||. -+++.+|+ |.|++.++. .+|++++..|.++= -.+
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~ 365 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADM 365 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccc
Confidence 35678999999999999999875 684 57999999 999998872 68999999998762 222
Q ss_pred chhHHH----------------HHHHHHHHhcccCCCCcEEEE
Q 043533 208 ANAFLF----------------KILKKRREAIASNGERGKVII 234 (301)
Q Consensus 208 ~D~i~~----------------~iL~~~~~aL~p~~~gg~l~i 234 (301)
||+++. ...+-++++|++ +|.+++
T Consensus 366 fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e---~Gl~Vv 405 (508)
T COG4262 366 FDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAE---TGLMVV 405 (508)
T ss_pred ccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCc---CceEEE
Confidence 666654 777888899998 675554
No 192
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.51 E-value=9.6e-05 Score=69.07 Aligned_cols=83 Identities=16% Similarity=0.099 Sum_probs=66.8
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCC---CcchhHHH------
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFI---PPANAFLF------ 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~---p~~D~i~~------ 213 (301)
..+|||++||+|.+++.++.+.+..+++++|+ |..++.+++ -+++++..+|+..-+ +.||+|++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~Gs~ 137 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPFGSP 137 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCCCCc
Confidence 46899999999999999999887668999999 888877764 245678888985522 23899988
Q ss_pred -HHHHHHHHhcccCCCCcEEEEE
Q 043533 214 -KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 214 -~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
..|..+.+.+++ ||.++|.
T Consensus 138 ~~~l~~al~~~~~---~gilyvS 157 (382)
T PRK04338 138 APFLDSAIRSVKR---GGLLCVT 157 (382)
T ss_pred HHHHHHHHHHhcC---CCEEEEE
Confidence 788887888899 7877777
No 193
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.44 E-value=8.5e-05 Score=63.06 Aligned_cols=79 Identities=22% Similarity=0.286 Sum_probs=61.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCC-Cc-chhHHH---
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFI-PP-ANAFLF--- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~-p~-~D~i~~--- 213 (301)
..+..+|+|+-||.|.++..+++..+..+++.+|+ |+.++.+++ .++|..+.+|..+-. .. +|-|+|
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp 178 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP 178 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence 45578999999999999999999888889999999 887776653 678999999987633 33 898888
Q ss_pred ----HHHHHHHHhccc
Q 043533 214 ----KILKKRREAIAS 225 (301)
Q Consensus 214 ----~iL~~~~~aL~p 225 (301)
..|..+...+++
T Consensus 179 ~~~~~fl~~~~~~~~~ 194 (200)
T PF02475_consen 179 ESSLEFLDAALSLLKE 194 (200)
T ss_dssp SSGGGGHHHHHHHEEE
T ss_pred HHHHHHHHHHHHHhcC
Confidence 888999999998
No 194
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.43 E-value=0.00039 Score=59.04 Aligned_cols=106 Identities=13% Similarity=0.165 Sum_probs=77.9
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCC-CCCc-----chhHHH-----------
Q 043533 151 GSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLR-FIPP-----ANAFLF----------- 213 (301)
Q Consensus 151 ~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~ri~~~~~D~~~-~~p~-----~D~i~~----------- 213 (301)
-++|||||=+....+.- ++-..++-+||... .+.| ...||++ |+|. ||+|.+
T Consensus 53 lrlLEVGals~~N~~s~---~~~fdvt~IDLns~------~~~I--~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~ 121 (219)
T PF11968_consen 53 LRLLEVGALSTDNACST---SGWFDVTRIDLNSQ------HPGI--LQQDFMERPLPKNESEKFDVISLSLVLNFVPDPK 121 (219)
T ss_pred ceEEeecccCCCCcccc---cCceeeEEeecCCC------CCCc--eeeccccCCCCCCcccceeEEEEEEEEeeCCCHH
Confidence 59999999866654442 45567999998442 3344 4789999 8872 999887
Q ss_pred ---HHHHHHHHhcccCCCCcE-----EEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCcee
Q 043533 214 ---KILKKRREAIASNGERGK-----VIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHY 285 (301)
Q Consensus 214 ---~iL~~~~~aL~p~~~gg~-----l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~ 285 (301)
++|+++++.|+| +|. ++|+-+... ..|.+..+.+.|.++++..||..+
T Consensus 122 ~RG~Ml~r~~~fL~~---~g~~~~~~LFlVlP~~C---------------------v~NSRy~~~~~l~~im~~LGf~~~ 177 (219)
T PF11968_consen 122 QRGEMLRRAHKFLKP---PGLSLFPSLFLVLPLPC---------------------VTNSRYMTEERLREIMESLGFTRV 177 (219)
T ss_pred HHHHHHHHHHHHhCC---CCccCcceEEEEeCchH---------------------hhcccccCHHHHHHHHHhCCcEEE
Confidence 999999999999 676 444422110 135566688999999999999999
Q ss_pred EEEecC
Q 043533 286 KITPIF 291 (301)
Q Consensus 286 ~~~~~~ 291 (301)
+.+...
T Consensus 178 ~~~~~~ 183 (219)
T PF11968_consen 178 KYKKSK 183 (219)
T ss_pred EEEecC
Confidence 887664
No 195
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.42 E-value=0.00031 Score=61.85 Aligned_cols=105 Identities=15% Similarity=0.089 Sum_probs=72.9
Q ss_pred HHHHHhhcccccc---hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEE
Q 043533 122 RFNEAMASDSEIM---TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYI 197 (301)
Q Consensus 122 ~f~~am~~~~~~~---~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~ 197 (301)
.|.+.|..++... .+.+. ..++ ..+....++|+|||.|.+... +|.+..+++|+ ...+..++..+.....
T Consensus 17 IYd~ia~~fs~tr~~~Wp~v~-qfl~-~~~~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~~~~~~~ 90 (293)
T KOG1331|consen 17 IYDKIATHFSATRAAPWPMVR-QFLD-SQPTGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRSGGDNVC 90 (293)
T ss_pred HHHHhhhhccccccCccHHHH-HHHh-ccCCcceeeecccCCcccCcC----CCcceeeecchhhhhccccccCCCceee
Confidence 5555655543321 12222 3333 234467899999999987653 58999999999 6777777754333556
Q ss_pred eCCCCC-CCCc--chhHHH--------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 198 AGDMLR-FIPP--ANAFLF--------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 198 ~~D~~~-~~p~--~D~i~~--------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
.+|+.+ |.++ +|..+. ++++++.+.++| ||..+|.
T Consensus 91 ~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrp---gg~~lvy 142 (293)
T KOG1331|consen 91 RADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRP---GGNALVY 142 (293)
T ss_pred hhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcC---CCceEEE
Confidence 689988 7765 776665 999999999999 8886664
No 196
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.00085 Score=56.80 Aligned_cols=62 Identities=18% Similarity=0.280 Sum_probs=47.4
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCeEEEeCCCCC
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDLPHAVANLPEADNLKYIAGDMLR 203 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dlp~~~~~a~~~~ri~~~~~D~~~ 203 (301)
..+. +.+. -+.+..+|+|+|+-.|.++..++++- ++.+++++|+-++-.. ++|.++.+|++.
T Consensus 34 ~el~-~k~~-i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~----~~V~~iq~d~~~ 96 (205)
T COG0293 34 LELN-EKFK-LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI----PGVIFLQGDITD 96 (205)
T ss_pred HHHH-HhcC-eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC----CCceEEeeeccC
Confidence 3455 5553 46778999999999999999998875 4567999998555433 448889999876
No 197
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.37 E-value=0.0001 Score=68.29 Aligned_cols=50 Identities=22% Similarity=0.321 Sum_probs=42.5
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCC
Q 043533 151 GSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDML 202 (301)
Q Consensus 151 ~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~ 202 (301)
.+|||++||+|.++..+++... +++++|. +++++.+++ -++++|+.+|+.
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~ 255 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAE 255 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHH
Confidence 4799999999999999998863 8999999 888887775 247889998885
No 198
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.36 E-value=0.0008 Score=61.23 Aligned_cols=91 Identities=12% Similarity=0.206 Sum_probs=71.9
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCCC--c-chhHHH-------HHHH
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLRFIP--P-ANAFLF-------KILK 217 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~ri~~~~~D~~~~~p--~-~D~i~~-------~iL~ 217 (301)
....++|||||++|.++..++++ +.+++++|...+-+.....++|+...+|.+...| . +|++++ ++++
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~P~rva~ 287 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEKPARVAE 287 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccCHHHHHH
Confidence 45789999999999999999998 5699999987777777778999999999887433 3 777776 8888
Q ss_pred HHHHhcccCCCC-cEEEEEeeeeCCCc
Q 043533 218 KRREAIASNGER-GKVIIIDIVINAEE 243 (301)
Q Consensus 218 ~~~~aL~p~~~g-g~l~i~e~~~~~~~ 243 (301)
-+.+.+.. | .+-.|+..-+|-..
T Consensus 288 lm~~Wl~~---g~cr~aIfnLKlpmk~ 311 (357)
T PRK11760 288 LMAQWLVN---GWCREAIFNLKLPMKK 311 (357)
T ss_pred HHHHHHhc---CcccEEEEEEEcCCCC
Confidence 88888876 3 45666666665543
No 199
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.35 E-value=0.00059 Score=61.52 Aligned_cols=66 Identities=21% Similarity=0.173 Sum_probs=54.5
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR 203 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~ 203 (301)
.++++ +.+. ......+||.=+|.|..+..++++.|+.+++++|. |.+++.+++ .+|++++.++|.+
T Consensus 9 l~Evl-~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 9 LDEVV-EGLN--IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred HHHHH-HhcC--cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 35566 6665 55667999999999999999999988899999999 888887764 4689999988764
No 200
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.34 E-value=0.00014 Score=60.95 Aligned_cols=82 Identities=16% Similarity=0.235 Sum_probs=63.1
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hH---HHhcCCC---CCCeEEEeCCCCC-CCCc-chhHHH-------HH
Q 043533 152 SLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PH---AVANLPE---ADNLKYIAGDMLR-FIPP-ANAFLF-------KI 215 (301)
Q Consensus 152 ~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~---~~~~a~~---~~ri~~~~~D~~~-~~p~-~D~i~~-------~i 215 (301)
+++|||.|.|.=++-|+=.+|+++++.+|. .. .+..+.. -++++++.+...+ ..+. ||+|++ .+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~~l~~l 130 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVAPLDKL 130 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSSSHHHH
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhcCHHHH
Confidence 899999999999999999999999999997 22 2222221 5689999998876 3444 999998 77
Q ss_pred HHHHHHhcccCCCCcEEEEEe
Q 043533 216 LKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 216 L~~~~~aL~p~~~gg~l~i~e 236 (301)
+.-+...+++ ||+++..-
T Consensus 131 ~~~~~~~l~~---~G~~l~~K 148 (184)
T PF02527_consen 131 LELARPLLKP---GGRLLAYK 148 (184)
T ss_dssp HHHHGGGEEE---EEEEEEEE
T ss_pred HHHHHHhcCC---CCEEEEEc
Confidence 8888888899 88877764
No 201
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=97.34 E-value=0.00036 Score=62.40 Aligned_cols=82 Identities=16% Similarity=0.208 Sum_probs=60.5
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhcCCC--------CC----CeEEEeCCCCC-C----C----
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPH-AVANLPE--------AD----NLKYIAGDMLR-F----I---- 205 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~-~~~~a~~--------~~----ri~~~~~D~~~-~----~---- 205 (301)
+....++|+|||-|.=++.--++.-+ ..+++|+.+ .+..|+. .. .+.|+.+|-+. . +
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~-~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIG-EYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhhhccc-ceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 56788999999999888777766432 699999944 4666653 12 36788998764 1 2
Q ss_pred CcchhHHH---------------HHHHHHHHhcccCCCCcEEE
Q 043533 206 PPANAFLF---------------KILKKRREAIASNGERGKVI 233 (301)
Q Consensus 206 p~~D~i~~---------------~iL~~~~~aL~p~~~gg~l~ 233 (301)
|.+|+|-+ .+|+++.+.|+| ||.+|
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~Lkp---GG~FI 234 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKP---GGVFI 234 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCC---CcEEE
Confidence 23888776 899999999999 77554
No 202
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.32 E-value=0.00053 Score=60.23 Aligned_cols=68 Identities=22% Similarity=0.351 Sum_probs=53.0
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC-CCCc
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----ADNLKYIAGDMLR-FIPP 207 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----~~ri~~~~~D~~~-~~p~ 207 (301)
.+.++ +..+ ......|++||+|.|.++..|+++.. +++++++ +..++..++ .++++++.+|+.+ ++|.
T Consensus 19 ~~kIv-~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 19 IDKIV-EAAN--ISPGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPS 92 (259)
T ss_pred HHHHH-HhcC--CCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchh
Confidence 45566 6665 56678999999999999999999965 4777777 555554443 6899999999998 7773
No 203
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.30 E-value=0.00013 Score=67.84 Aligned_cols=50 Identities=22% Similarity=0.326 Sum_probs=42.1
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCC
Q 043533 151 GSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDML 202 (301)
Q Consensus 151 ~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~ 202 (301)
.+|||++||+|.++..+++... +++++|. +.+++.+++ -++++|+.+|+.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~ 264 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAE 264 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 5799999999999999998863 8999999 888877764 347889988884
No 204
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.28 E-value=9.3e-05 Score=61.81 Aligned_cols=36 Identities=17% Similarity=0.235 Sum_probs=30.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHC-CCCeEEEeechHH
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDLPHA 184 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dlp~~ 184 (301)
+..++|||||++|.++..++++. +..+++++|+..+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 45899999999999999999987 7889999999443
No 205
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.28 E-value=0.00082 Score=55.65 Aligned_cols=82 Identities=16% Similarity=0.247 Sum_probs=66.0
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC-CCCcchhHHH---------
Q 043533 151 GSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR-FIPPANAFLF--------- 213 (301)
Q Consensus 151 ~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~-~~p~~D~i~~--------- 213 (301)
..+.|+|.|+|.++.-.+++ .-+++.++. |...+.|.+ ..+++++.||+.+ .+..+|+|++
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 58899999999999887776 458999999 777776665 5789999999988 7866999988
Q ss_pred ----HHHHHHHHhcccCCCCcEEEEEee
Q 043533 214 ----KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 ----~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
.+++.+.+-|+. +++++=.+.
T Consensus 112 E~qVpV~n~vleFLr~---d~tiiPq~v 136 (252)
T COG4076 112 EKQVPVINAVLEFLRY---DPTIIPQEV 136 (252)
T ss_pred ccccHHHHHHHHHhhc---CCccccHHH
Confidence 777888888887 677765443
No 206
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.21 E-value=0.0002 Score=56.78 Aligned_cols=52 Identities=21% Similarity=0.265 Sum_probs=39.7
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHHhcCCC-----CCCeEEEeCCCCC
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGI-KCTVLDL-PHAVANLPE-----ADNLKYIAGDMLR 203 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~-~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~ 203 (301)
++++.|+|||.|.+.++ -.+|+. .++++|+ |+.++.+.. .-++.+.++|+.+
T Consensus 49 gkkl~DLgcgcGmLs~a--~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdild 107 (185)
T KOG3420|consen 49 GKKLKDLGCGCGMLSIA--FSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILD 107 (185)
T ss_pred CcchhhhcCchhhhHHH--hhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccc
Confidence 58999999999999944 445654 5999999 999988875 2345666677665
No 207
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.15 E-value=0.00043 Score=57.94 Aligned_cols=86 Identities=19% Similarity=0.308 Sum_probs=60.2
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------------CCCeEEEeCCCCCCCCc-c------
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------------ADNLKYIAGDMLRFIPP-A------ 208 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------------~~ri~~~~~D~~~~~p~-~------ 208 (301)
...+.|||||-|.++..|+..||+--++++++ -.|.+..++ -.++.+...+.+.-+|. +
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 46799999999999999999999999999998 444332221 34566665554443332 1
Q ss_pred -hhHHH-----------------HHHHHHHHhcccCCCCcEEEEEeee
Q 043533 209 -NAFLF-----------------KILKKRREAIASNGERGKVIIIDIV 238 (301)
Q Consensus 209 -D~i~~-----------------~iL~~~~~aL~p~~~gg~l~i~e~~ 238 (301)
+.++. .++.+..-.|++ ||.++.+.-+
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~---gg~~ytitDv 185 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLRE---GGILYTITDV 185 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhc---CceEEEEeeH
Confidence 11111 889999999999 8988876543
No 208
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.13 E-value=0.00058 Score=60.62 Aligned_cols=65 Identities=18% Similarity=0.383 Sum_probs=52.9
Q ss_pred chHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEeCCCCC
Q 043533 134 MTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE----ADNLKYIAGDMLR 203 (301)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~----~~ri~~~~~D~~~ 203 (301)
.++.++ +.++ ..+...|+|||+|.|.++..|++.. -+++++|. +..++..++ .+|++++.+|+++
T Consensus 18 ~~~~Iv-~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~ 87 (262)
T PF00398_consen 18 IADKIV-DALD--LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLK 87 (262)
T ss_dssp HHHHHH-HHHT--CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTT
T ss_pred HHHHHH-HhcC--CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhc
Confidence 355677 7776 6678999999999999999999997 68999998 666665543 6899999999987
No 209
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.12 E-value=0.00038 Score=65.87 Aligned_cols=87 Identities=18% Similarity=0.228 Sum_probs=57.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEe---ec-hHHHhcCCCCCCeEEEeCCC--CC-CCCc--chhHHH-----
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVL---DL-PHAVANLPEADNLKYIAGDM--LR-FIPP--ANAFLF----- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~---Dl-p~~~~~a~~~~ri~~~~~D~--~~-~~p~--~D~i~~----- 213 (301)
...+++||||||+|.++..|+.++ +..+.+ |- +..+..|.+ -.|-.+-+-+ .. |+|+ ||++.+
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r~--V~t~s~a~~d~~~~qvqfale-RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i 192 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLERN--VTTMSFAPNDEHEAQVQFALE-RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLI 192 (506)
T ss_pred CceEEEEeccceeehhHHHHhhCC--ceEEEcccccCCchhhhhhhh-cCcchhhhhhccccccCCccchhhhhcccccc
Confidence 345789999999999999999884 333222 22 222222221 1133232222 12 7886 999998
Q ss_pred -------HHHHHHHHhcccCCCCcEEEEEeeeeC
Q 043533 214 -------KILKKRREAIASNGERGKVIIIDIVIN 240 (301)
Q Consensus 214 -------~iL~~~~~aL~p~~~gg~l~i~e~~~~ 240 (301)
.+|-++-++|+| ||.+++..+-..
T Consensus 193 ~W~~~~g~~l~evdRvLRp---GGyfv~S~ppv~ 223 (506)
T PF03141_consen 193 PWHPNDGFLLFEVDRVLRP---GGYFVLSGPPVY 223 (506)
T ss_pred cchhcccceeehhhhhhcc---CceEEecCCccc
Confidence 788999999999 898887766444
No 210
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.12 E-value=0.00042 Score=61.55 Aligned_cols=82 Identities=17% Similarity=0.379 Sum_probs=51.8
Q ss_pred CCeEEEecCCc-cHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCC-C--CCcchhHHH--
Q 043533 150 LGSLVDVGGGN-VSFSRIISEAF-PGIKCTVLDL-PHAVANLPE--------ADNLKYIAGDMLR-F--IPPANAFLF-- 213 (301)
Q Consensus 150 ~~~vlDvGgG~-G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~--------~~ri~~~~~D~~~-~--~p~~D~i~~-- 213 (301)
+.+|+=||+|. -..++.|++++ ++..++++|. |+.++.+++ +.+++|+.+|... + +..||+|++
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 46999999995 45666666654 7889999999 887777653 6899999999875 3 345898887
Q ss_pred ----------HHHHHHHHhcccCCCCcEEEE
Q 043533 214 ----------KILKKRREAIASNGERGKVII 234 (301)
Q Consensus 214 ----------~iL~~~~~aL~p~~~gg~l~i 234 (301)
++|.++.+.|+| |..+++
T Consensus 201 lVg~~~e~K~~Il~~l~~~m~~---ga~l~~ 228 (276)
T PF03059_consen 201 LVGMDAEPKEEILEHLAKHMAP---GARLVV 228 (276)
T ss_dssp T-S----SHHHHHHHHHHHS-T---TSEEEE
T ss_pred hcccccchHHHHHHHHHhhCCC---CcEEEE
Confidence 999999999999 665444
No 211
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.00087 Score=55.23 Aligned_cols=64 Identities=17% Similarity=0.279 Sum_probs=45.5
Q ss_pred CCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCC-c-chhHHH
Q 043533 150 LGSLVDVGGGNVSFSRIISEA-FPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLRFIP-P-ANAFLF 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~-~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~~~p-~-~D~i~~ 213 (301)
..-+++||||+|..+..|++. .|+......|+ |++++.-.+ .-++..+..|+...+. + .|+++.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvf 116 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVF 116 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEE
Confidence 678999999999999998876 57888999999 777765332 3345666777765322 2 555444
No 212
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.06 E-value=0.0015 Score=62.65 Aligned_cols=87 Identities=14% Similarity=0.119 Sum_probs=65.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC---CCCc-chhHHH-
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR---FIPP-ANAFLF- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~---~~p~-~D~i~~- 213 (301)
.....+|||++++.|.=+..++.... ...++..|+ +.-+..+++ -.+|.+...|... .+|. ||.|++
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 45678999999999999999998864 458999998 554444432 3567777778654 2444 787775
Q ss_pred --------------------------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 --------------------------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 --------------------------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
+||.++.+.|+| ||+|+...
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lkp---GG~LVYST 242 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKP---GGTLVYST 242 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCC---CcEEEEEC
Confidence 899999999999 88775444
No 213
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.99 E-value=0.0061 Score=50.89 Aligned_cols=127 Identities=17% Similarity=0.063 Sum_probs=77.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeechHHHhcCC-----------C--CCCeEEEeCCCCC-CCCc-chh
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEA-FPGIKCTVLDLPHAVANLP-----------E--ADNLKYIAGDMLR-FIPP-ANA 210 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~-~P~~~~~~~Dlp~~~~~a~-----------~--~~ri~~~~~D~~~-~~p~-~D~ 210 (301)
+....+|+|+=.|.|.++..+... .|.-.+..+--.+...-+. + ..+++.+..+... +.|+ .|+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~ 125 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDL 125 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccc
Confidence 777899999999999999998875 3444444332222222111 1 2344444444443 2232 343
Q ss_pred HHH------------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHH
Q 043533 211 FLF------------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESE 272 (301)
Q Consensus 211 i~~------------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e 272 (301)
++. ++.+.++++||| ||.++|.|+.....+.. .|-..++ -++..-
T Consensus 126 ~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKP---GGv~~V~dH~a~pG~~~---------~dt~~~~-----ri~~a~ 188 (238)
T COG4798 126 VPTAQNYHDMHNKNIHPATAAKVNAAVFKALKP---GGVYLVEDHRADPGSGL---------SDTITLH-----RIDPAV 188 (238)
T ss_pred cccchhhhhhhccccCcchHHHHHHHHHHhcCC---CcEEEEEeccccCCCCh---------hhhhhhc-----ccChHH
Confidence 332 899999999999 88888888765543321 1111111 235667
Q ss_pred HHHHHHhCCCceeEEEec
Q 043533 273 WAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 273 ~~~ll~~aGf~~~~~~~~ 290 (301)
.++..+++||+...-..+
T Consensus 189 V~a~veaaGFkl~aeS~i 206 (238)
T COG4798 189 VIAEVEAAGFKLEAESEI 206 (238)
T ss_pred HHHHHHhhcceeeeeehh
Confidence 788899999998754433
No 214
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.93 E-value=0.0013 Score=52.44 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=42.2
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCC
Q 043533 152 SLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDML 202 (301)
Q Consensus 152 ~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~ 202 (301)
+++|||||.|.++..+++.+|..+++++|. |.+.+.+++ .++++++...+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeee
Confidence 589999999999999999999999999999 777776654 245777776654
No 215
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=96.93 E-value=0.027 Score=49.94 Aligned_cols=123 Identities=15% Similarity=0.101 Sum_probs=83.5
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeech-H-------HHhcCC---C---------------------------
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLP-H-------AVANLP---E--------------------------- 190 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp-~-------~~~~a~---~--------------------------- 190 (301)
+..+||-=|||.|.++-+++++ +-.+.+.+.. . ++.... +
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 3578999999999999999999 4456666652 1 222211 0
Q ss_pred ---------CCCeEEEeCCCCC--CCC---c-chhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCcc
Q 043533 191 ---------ADNLKYIAGDMLR--FIP---P-ANAFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEE 244 (301)
Q Consensus 191 ---------~~ri~~~~~D~~~--~~p---~-~D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~ 244 (301)
.++++...|||.+ +-+ . +|+|+. .-|+.|++.||| ||.++=+-+.+-...
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkp---gG~WIN~GPLlyh~~- 209 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKP---GGYWINFGPLLYHFE- 209 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhcc---CCEEEecCCccccCC-
Confidence 3478999999987 333 2 887765 889999999999 885543333322111
Q ss_pred chhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEe
Q 043533 245 EHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITP 289 (301)
Q Consensus 245 ~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 289 (301)
+.. ......-+.+.+|++++.++.||++++...
T Consensus 210 -----------~~~-~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 210 -----------PMS-IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred -----------CCC-CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 111 001122578999999999999999987654
No 216
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=96.90 E-value=0.013 Score=52.61 Aligned_cols=85 Identities=20% Similarity=0.347 Sum_probs=62.8
Q ss_pred CCeEEEecCCccHHHHHHHHHC--------------------CCCeEEEeec---hHHHhcCCC----------------
Q 043533 150 LGSLVDVGGGNVSFSRIISEAF--------------------PGIKCTVLDL---PHAVANLPE---------------- 190 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~--------------------P~~~~~~~Dl---p~~~~~a~~---------------- 190 (301)
..+||-||||.|.=..+++..+ |.+.++++|+ ..|+.....
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 3699999999998666666555 3368999998 345443221
Q ss_pred -------CCCeEEEeCCCCC-CC---------CcchhHHH----------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 191 -------ADNLKYIAGDMLR-FI---------PPANAFLF----------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 191 -------~~ri~~~~~D~~~-~~---------p~~D~i~~----------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
.=+++|...|+.. .. |..++|.+ ++|.++...++| |..++|+|.
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~---GslLLVvDS 243 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPP---GSLLLVVDS 243 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCC---CcEEEEEcC
Confidence 1247899999987 32 12577776 999999999999 889999985
No 217
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.89 E-value=0.0083 Score=51.12 Aligned_cols=64 Identities=11% Similarity=0.241 Sum_probs=51.0
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCC-c--chhHHH
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIP-P--ANAFLF 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p-~--~D~i~~ 213 (301)
...+.||||-++.+.+.|.+.+|..+++..|. +.-++.|.. .+||+...+|-+.++. + .|++++
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivI 91 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVI 91 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEE
Confidence 44599999999999999999999999999998 544444432 6899999999987643 2 676665
No 218
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=96.87 E-value=0.00043 Score=60.87 Aligned_cols=123 Identities=14% Similarity=0.185 Sum_probs=70.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHHhcCC------C----------------------------CC
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGI-KCTVLDL-PHAVANLP------E----------------------------AD 192 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~-~~~~~Dl-p~~~~~a~------~----------------------------~~ 192 (301)
+..++||||+|.-.+- ++.+.+.. +++..|. +.-.+..+ . ..
T Consensus 56 ~g~~llDiGsGPtiy~--~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQ--LLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GG--GTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHh--hhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 3568999999985552 33333333 3777787 33222111 0 12
Q ss_pred CeE-EEeCCCCC--CC------Cc-chhHHH---------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchh
Q 043533 193 NLK-YIAGDMLR--FI------PP-ANAFLF---------------KILKKRREAIASNGERGKVIIIDIVINAEEEEHE 247 (301)
Q Consensus 193 ri~-~~~~D~~~--~~------p~-~D~i~~---------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~ 247 (301)
.|+ ++.+|.++ |+ |. +|++++ +.++++.+.||| ||.|++... +......
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkp---GG~Lil~~~-l~~t~Y~-- 207 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKP---GGHLILAGV-LGSTYYM-- 207 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEE---EEEEEEEEE-SS-SEEE--
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCC---CcEEEEEEE-cCceeEE--
Confidence 244 67789877 22 34 898775 999999999999 888888765 3222211
Q ss_pred hhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEe
Q 043533 248 LTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITP 289 (301)
Q Consensus 248 ~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 289 (301)
. .-..+ ..-..+++.+++.|+++||.+.+...
T Consensus 208 v----G~~~F------~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 208 V----GGHKF------PCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp E----TTEEE------E---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred E----CCEec------ccccCCHHHHHHHHHHcCCEEEeccc
Confidence 0 00011 11235899999999999999998875
No 219
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.82 E-value=0.00096 Score=57.11 Aligned_cols=81 Identities=16% Similarity=0.204 Sum_probs=59.3
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hH---HHhcCCC---CCCeEEEeCCCCC-C-CCc-chhHHH------
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PH---AVANLPE---ADNLKYIAGDMLR-F-IPP-ANAFLF------ 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~---~~~~a~~---~~ri~~~~~D~~~-~-~p~-~D~i~~------ 213 (301)
..+++|||.|.|.=++-++=.+|+++++.+|. .. -++.+.. -++++++.+.+.+ . .+. ||+|++
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~L 147 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVASL 147 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccch
Confidence 58999999999999999999999999999997 22 2233222 5789999988865 2 334 999998
Q ss_pred -HHHHHHHHhcccCCCCcEEE
Q 043533 214 -KILKKRREAIASNGERGKVI 233 (301)
Q Consensus 214 -~iL~~~~~aL~p~~~gg~l~ 233 (301)
.++.-+...+++ ||+++
T Consensus 148 ~~l~e~~~pllk~---~g~~~ 165 (215)
T COG0357 148 NVLLELCLPLLKV---GGGFL 165 (215)
T ss_pred HHHHHHHHHhccc---CCcch
Confidence 444444555566 56543
No 220
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.80 E-value=0.00047 Score=57.93 Aligned_cols=135 Identities=16% Similarity=0.198 Sum_probs=76.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeC-CCCCCCCcchhHHH-----------HH
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAG-DMLRFIPPANAFLF-----------KI 215 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~-D~~~~~p~~D~i~~-----------~i 215 (301)
...++||+|.|.|..+..++..+.+ +..-++ ..|..+.++ .+..+... ++.+.--.+|+|.+ ++
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~k-k~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p~kL 188 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKK-KNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDPFKL 188 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhh-cCCceeeehhhhhcCceeehHHHHHHHHhhcChHHH
Confidence 3579999999999999998877654 333344 345544443 22222221 22211112899988 99
Q ss_pred HHHHHHhcccCCCCcEEEEEeeeeCCCccch-hhhhhhhhhchhhccccCCccCC--HHHHHHHHHhCCCceeEEEecC
Q 043533 216 LKKRREAIASNGERGKVIIIDIVINAEEEEH-ELTETKFLFDIVMSVNATGKERT--ESEWAKLFFDAVFSHYKITPIF 291 (301)
Q Consensus 216 L~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~-~~~~~~~~~d~~~~~~~~g~~rt--~~e~~~ll~~aGf~~~~~~~~~ 291 (301)
|+-++.+|+|. +|++++. .++|-..... ...-....-| +++ ..+|+.+. .+.+.++|+++||.+......|
T Consensus 189 L~Di~~vl~ps--ngrviva-LVLP~~hYVE~N~~g~~~rPd-n~L-e~~Gr~~ee~v~~~~e~lr~~g~~veawTrlP 262 (288)
T KOG3987|consen 189 LEDIHLVLAPS--NGRVIVA-LVLPYMHYVETNTSGLPLRPD-NLL-ENNGRSFEEEVARFMELLRNCGYRVEAWTRLP 262 (288)
T ss_pred HHHHHHHhccC--CCcEEEE-EEecccceeecCCCCCcCCch-HHH-HhcCccHHHHHHHHHHHHHhcCchhhhhhcCC
Confidence 99999999993 6877653 3333222110 0000000011 111 23455332 2346789999999998877664
No 221
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.78 E-value=0.00068 Score=56.87 Aligned_cols=88 Identities=14% Similarity=0.227 Sum_probs=64.2
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCC---C---Cc-chhHHH
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRF---I---PP-ANAFLF 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~---~---p~-~D~i~~ 213 (301)
...++||+=||+|.++.+.+.+. ..+++.+|. +..+..+++ .+++.++.+|.+.- . .. ||+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 46899999999999999999886 348999999 777666654 45789999996541 1 23 888887
Q ss_pred -----------HHHHHHH--HhcccCCCCcEEEEEeeeeCC
Q 043533 214 -----------KILKKRR--EAIASNGERGKVIIIDIVINA 241 (301)
Q Consensus 214 -----------~iL~~~~--~aL~p~~~gg~l~i~e~~~~~ 241 (301)
.+|..+. ..|++ +.++|+|.....
T Consensus 121 DPPY~~~~~~~~~l~~l~~~~~l~~----~~~ii~E~~~~~ 157 (183)
T PF03602_consen 121 DPPYAKGLYYEELLELLAENNLLNE----DGLIIIEHSKKE 157 (183)
T ss_dssp --STTSCHHHHHHHHHHHHTTSEEE----EEEEEEEEETTS
T ss_pred CCCcccchHHHHHHHHHHHCCCCCC----CEEEEEEecCCC
Confidence 4666665 56677 668899986653
No 222
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.75 E-value=0.0012 Score=52.79 Aligned_cols=55 Identities=24% Similarity=0.416 Sum_probs=41.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHH----CCCCeEEEeec-hHHHhcCCC---------CCCeEEEeCCCC
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEA----FPGIKCTVLDL-PHAVANLPE---------ADNLKYIAGDML 202 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~----~P~~~~~~~Dl-p~~~~~a~~---------~~ri~~~~~D~~ 202 (301)
.+..+|+|+|||.|.++..|+.. .|+++++++|. +..++.+.. ..++.+..++..
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 92 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIA 92 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchh
Confidence 56789999999999999999982 38899999998 665555543 245666665553
No 223
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.75 E-value=0.0051 Score=51.01 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=32.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-CCCeEEEeechHH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAF-PGIKCTVLDLPHA 184 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~-P~~~~~~~Dlp~~ 184 (301)
+.+..+|||+||-.|.++....++. |+..+.++|+-.+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~ 105 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI 105 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec
Confidence 4667899999999999999988875 9999999998444
No 224
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.74 E-value=0.0035 Score=63.41 Aligned_cols=77 Identities=13% Similarity=0.076 Sum_probs=56.1
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHH----C--------------------------------------C
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEA----F--------------------------------------P 172 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~----~--------------------------------------P 172 (301)
+..++ ....| ..+...++|-.||+|.++++.+.. . +
T Consensus 178 Aaa~l-~~a~w-~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~ 255 (702)
T PRK11783 178 AAAIL-LRSGW-PQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAEL 255 (702)
T ss_pred HHHHH-HHcCC-CCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence 44556 55553 144679999999999999997653 1 1
Q ss_pred CCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC----cchhHHH
Q 043533 173 GIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FIP----PANAFLF 213 (301)
Q Consensus 173 ~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~p----~~D~i~~ 213 (301)
..+++++|+ +.+++.|+. .++|.|..+|+.+ +.+ .+|+|++
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~Ivt 309 (702)
T PRK11783 256 PSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVIS 309 (702)
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEE
Confidence 236899999 888888775 4679999999977 432 2788877
No 225
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.72 E-value=0.0018 Score=58.87 Aligned_cols=87 Identities=21% Similarity=0.206 Sum_probs=60.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHH-------CCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCC-C-CC--
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEA-------FPGIKCTVLDL-PHAVANLPE--------ADNLKYIAGDMLR-F-IP-- 206 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~-------~P~~~~~~~Dl-p~~~~~a~~--------~~ri~~~~~D~~~-~-~p-- 206 (301)
.....+|+|-+||+|.++.++.+. .+..++.++|+ +.++..+.. .....+..+|.+. + ..
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 455678999999999999998874 47889999999 666554431 3334577788775 2 32
Q ss_pred c-chhHHH--------------------------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 207 P-ANAFLF--------------------------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 207 ~-~D~i~~--------------------------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
. ||+|++ ..+.++.+.|++ ||++.++=
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~---~G~~~~Il 183 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKP---GGRAAIIL 183 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccc---ccceeEEe
Confidence 2 777776 577888899998 78765543
No 226
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.67 E-value=0.001 Score=61.97 Aligned_cols=86 Identities=15% Similarity=0.211 Sum_probs=70.4
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCCCC----C--c-chhH
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE--------ADNLKYIAGDMLRFI----P--P-ANAF 211 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~--------~~ri~~~~~D~~~~~----p--~-~D~i 211 (301)
..+++|||+=|=||.++...+... ..++|.+|+ ..+++-|++ .+++.|+.+|.|+-+ . . ||+|
T Consensus 216 ~~GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred ccCCeEEEecccCcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 347899999999999999988774 238999999 677777764 577999999998732 2 2 9999
Q ss_pred HH--------------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 212 LF--------------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 212 ~~--------------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
++ .++..+.+.|+| ||.++++..
T Consensus 295 ilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~p---gG~l~~~s~ 337 (393)
T COG1092 295 ILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAP---GGTLVTSSC 337 (393)
T ss_pred EECCcccccCcccchhHHHHHHHHHHHHHHHcCC---CCEEEEEec
Confidence 98 889999999999 887777664
No 227
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.63 E-value=0.0064 Score=53.35 Aligned_cols=114 Identities=16% Similarity=0.240 Sum_probs=83.9
Q ss_pred HHHHHhhcccccc----hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCC----C-
Q 043533 122 RFNEAMASDSEIM----TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEA-FPGIKCTVLDL-PHAVANLP----E- 190 (301)
Q Consensus 122 ~f~~am~~~~~~~----~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~P~~~~~~~Dl-p~~~~~a~----~- 190 (301)
.|..+|...++.. +.-++ ..++ ...+.+||+-|.|+|.++..+++. .|.-++.-+|. ..-.+.|. +
T Consensus 77 LWTl~LphRTQI~Yt~Dia~I~-~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~h 153 (314)
T KOG2915|consen 77 LWTLALPHRTQILYTPDIAMIL-SMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREH 153 (314)
T ss_pred HhhhhccCcceEEecccHHHHH-HHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHh
Confidence 4666676666532 34466 7777 788899999999999999999997 58888999998 33333333 2
Q ss_pred --CCCeEEEeCCCCC-CCC--c--chhHHH------HHHHHHHHhcccCCCCcEEEEEeeeeC
Q 043533 191 --ADNLKYIAGDMLR-FIP--P--ANAFLF------KILKKRREAIASNGERGKVIIIDIVIN 240 (301)
Q Consensus 191 --~~ri~~~~~D~~~-~~p--~--~D~i~~------~iL~~~~~aL~p~~~gg~l~i~e~~~~ 240 (301)
++++++...|... .++ + +|.|++ ..+-.++.+|+.. ||++.-+.+.+.
T Consensus 154 gi~~~vt~~hrDVc~~GF~~ks~~aDaVFLDlPaPw~AiPha~~~lk~~--g~r~csFSPCIE 214 (314)
T KOG2915|consen 154 GIGDNVTVTHRDVCGSGFLIKSLKADAVFLDLPAPWEAIPHAAKILKDE--GGRLCSFSPCIE 214 (314)
T ss_pred CCCcceEEEEeecccCCccccccccceEEEcCCChhhhhhhhHHHhhhc--CceEEeccHHHH
Confidence 7899999999987 444 3 899998 7777888888872 567766665543
No 228
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.61 E-value=0.0036 Score=55.82 Aligned_cols=64 Identities=25% Similarity=0.262 Sum_probs=53.1
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCe-EEEeec-hHHHhcCCC-----CCCeEEEeCCCC
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIK-CTVLDL-PHAVANLPE-----ADNLKYIAGDML 202 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~-~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~ 202 (301)
.+++ +.+. ......+||.==|.|..+..+++++|+.. .+++|. |.+++.|++ .+|++++.++|.
T Consensus 13 ~E~i-~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~ 83 (314)
T COG0275 13 NEVV-ELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFA 83 (314)
T ss_pred HHHH-Hhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHH
Confidence 4556 6665 55568999999999999999999999765 999999 999998875 578888887764
No 229
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.61 E-value=0.003 Score=58.87 Aligned_cols=83 Identities=14% Similarity=0.159 Sum_probs=67.1
Q ss_pred CeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC---CCc-chhHHH-----
Q 043533 151 GSLVDVGGGNVSFSRIISEAFPG-IKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRF---IPP-ANAFLF----- 213 (301)
Q Consensus 151 ~~vlDvGgG~G~~~~~l~~~~P~-~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~---~p~-~D~i~~----- 213 (301)
-+|||+-||+|..+++.+++.++ -+++..|+ |+.++.+++ ..++++..+|+..- ... ||+|.+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDPfGs 125 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDPFGT 125 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCCCCC
Confidence 48999999999999999998655 47999999 888877764 24588888998752 123 899888
Q ss_pred --HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 --KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 --~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
..+..+.+.+++ ||.|+|.-
T Consensus 126 ~~~fld~al~~~~~---~glL~vTa 147 (374)
T TIGR00308 126 PAPFVDSAIQASAE---RGLLLVTA 147 (374)
T ss_pred cHHHHHHHHHhccc---CCEEEEEe
Confidence 899999999998 88888873
No 230
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.50 E-value=0.0036 Score=55.97 Aligned_cols=87 Identities=16% Similarity=0.239 Sum_probs=56.6
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHHhcCCC----CC--CeEEEeCCCCC---CCCcchhHHH-----
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGI-KCTVLDL-PHAVANLPE----AD--NLKYIAGDMLR---FIPPANAFLF----- 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~-~~~~~Dl-p~~~~~a~~----~~--ri~~~~~D~~~---~~p~~D~i~~----- 213 (301)
+.+|||+|+|+|..+-++...+|.+ +++++|. +.+++.++. .. +......++.. +++..|+|++
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~L~ 113 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYVLN 113 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehhhh
Confidence 5799999999999998888888855 5889998 777775553 11 11101112221 2333687776
Q ss_pred --------HHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 043533 214 --------KILKKRREAIASNGERGKVIIIDIVINA 241 (301)
Q Consensus 214 --------~iL~~~~~aL~p~~~gg~l~i~e~~~~~ 241 (301)
.+++++.+.+. +.|+|+|.-.+.
T Consensus 114 EL~~~~r~~lv~~LW~~~~-----~~LVlVEpGt~~ 144 (274)
T PF09243_consen 114 ELPSAARAELVRSLWNKTA-----PVLVLVEPGTPA 144 (274)
T ss_pred cCCchHHHHHHHHHHHhcc-----CcEEEEcCCChH
Confidence 66666666544 488899975544
No 231
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.45 E-value=0.0019 Score=58.52 Aligned_cols=87 Identities=20% Similarity=0.366 Sum_probs=58.9
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCe-EEEeec-h---HHHhcCCC---CCCeEEEeCCCCC---CCCc---chhHHH--
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIK-CTVLDL-P---HAVANLPE---ADNLKYIAGDMLR---FIPP---ANAFLF-- 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~-~~~~Dl-p---~~~~~a~~---~~ri~~~~~D~~~---~~p~---~D~i~~-- 213 (301)
+++|||||-|.|.-+-++-.-+|+++ +++++. | .|++.... ..+-..-..|+.. ++|. |++++.
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~ 193 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLD 193 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhh
Confidence 57899999999999999999999986 666666 3 23222221 1222223344433 4554 555554
Q ss_pred ------------HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 214 ------------KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 214 ------------~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
-.++++...+.| ||.++|+|.--
T Consensus 194 eLl~d~~ek~i~~~ie~lw~l~~~---gg~lVivErGt 228 (484)
T COG5459 194 ELLPDGNEKPIQVNIERLWNLLAP---GGHLVIVERGT 228 (484)
T ss_pred hhccccCcchHHHHHHHHHHhccC---CCeEEEEeCCC
Confidence 378888999999 99999999643
No 232
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=96.35 E-value=0.0015 Score=53.56 Aligned_cols=51 Identities=22% Similarity=0.421 Sum_probs=41.2
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC
Q 043533 151 GSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR 203 (301)
Q Consensus 151 ~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~ 203 (301)
+.|+|+-||.|..++.+++.+. +++.+|+ |..++.++. .+||.|+.+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~ 59 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFE 59 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHH
T ss_pred CEEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHH
Confidence 4799999999999999999974 5999999 777776663 6799999999974
No 233
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.30 E-value=0.0075 Score=51.67 Aligned_cols=92 Identities=13% Similarity=0.159 Sum_probs=69.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCC-------CCCCeEEEeCCCCCCC--------Cc-c
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLP-------EADNLKYIAGDMLRFI--------PP-A 208 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~-------~~~ri~~~~~D~~~~~--------p~-~ 208 (301)
.-++++++|||.=||.-+.+.+.+-| +-+++.+|. ++..+.+. -...|+++.|+..+.+ +. |
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 45689999999999999999999987 468999998 33333332 2688999999887632 12 8
Q ss_pred hhHHH--------HHHHHHHHhcccCCCCcEEEEEeeeeCCC
Q 043533 209 NAFLF--------KILKKRREAIASNGERGKVIIIDIVINAE 242 (301)
Q Consensus 209 D~i~~--------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~ 242 (301)
|.+++ ..+.++.+.+++ |+++++|.++...
T Consensus 151 DfaFvDadK~nY~~y~e~~l~Llr~----GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 151 DFAFVDADKDNYSNYYERLLRLLRV----GGVIVVDNVLWPG 188 (237)
T ss_pred eEEEEccchHHHHHHHHHHHhhccc----ccEEEEeccccCC
Confidence 88887 778888899999 5577777755543
No 234
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.25 E-value=0.00067 Score=51.30 Aligned_cols=80 Identities=21% Similarity=0.380 Sum_probs=33.6
Q ss_pred EEecCCccHHHHHHHHHCCCC---eEEEeec-h---HHHhcCCC---CCCeEEEeCCCCCC---CC--cchhHHH-----
Q 043533 154 VDVGGGNVSFSRIISEAFPGI---KCTVLDL-P---HAVANLPE---ADNLKYIAGDMLRF---IP--PANAFLF----- 213 (301)
Q Consensus 154 lDvGgG~G~~~~~l~~~~P~~---~~~~~Dl-p---~~~~~a~~---~~ri~~~~~D~~~~---~p--~~D~i~~----- 213 (301)
|+||+..|..+..+++..+.. +++++|. + .+.+.+++ .++++++.+|..+- ++ .+|++++
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H~ 80 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDHS 80 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCCC
Confidence 689999999999988876544 6899999 4 33334333 57899999998642 33 2777776
Q ss_pred -----HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 -----KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 -----~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
.-|+.+.+.|+| ||.+++.|
T Consensus 81 ~~~~~~dl~~~~~~l~~---ggviv~dD 105 (106)
T PF13578_consen 81 YEAVLRDLENALPRLAP---GGVIVFDD 105 (106)
T ss_dssp HHHHHHHHHHHGGGEEE---EEEEEEE-
T ss_pred HHHHHHHHHHHHHHcCC---CeEEEEeC
Confidence 778888889999 66555443
No 235
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.22 E-value=0.0071 Score=55.10 Aligned_cols=84 Identities=18% Similarity=0.269 Sum_probs=58.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHC----CCCeEEEeec-hHHHhcCCC------CCCeEE--EeCCCCCC---CC-----
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAF----PGIKCTVLDL-PHAVANLPE------ADNLKY--IAGDMLRF---IP----- 206 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~----P~~~~~~~Dl-p~~~~~a~~------~~ri~~--~~~D~~~~---~p----- 206 (301)
+....|+|+|||.|.-...|+++. ...+.+.+|+ .+.++.+.. .+.+++ +.||+.++ +|
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 345589999999999777666654 3567999999 445544332 355655 67888653 21
Q ss_pred c-chhHHH--------------HHHHHHHH-hcccCCCCcEEEE
Q 043533 207 P-ANAFLF--------------KILKKRRE-AIASNGERGKVII 234 (301)
Q Consensus 207 ~-~D~i~~--------------~iL~~~~~-aL~p~~~gg~l~i 234 (301)
. ..+++. .+|+++++ .|+| |+.++|
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~---~d~lLi 195 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSP---SDSFLI 195 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCC---CCEEEE
Confidence 1 445444 99999999 9999 777666
No 236
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.21 E-value=0.017 Score=49.12 Aligned_cols=92 Identities=14% Similarity=0.202 Sum_probs=70.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-----CCCeEEEeCCCCC---CCCc--chhHHH---
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPE-----ADNLKYIAGDMLR---FIPP--ANAFLF--- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~-----~~ri~~~~~D~~~---~~p~--~D~i~~--- 213 (301)
..++++||.||=|.|.....+.++.|..+.|+---|+|.++.+. .++|....|-+.+ .+|+ ||-|+-
T Consensus 99 ~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy 178 (271)
T KOG1709|consen 99 STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTY 178 (271)
T ss_pred hhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeech
Confidence 47789999999999999999999999888777666999998885 5778777775543 4664 665543
Q ss_pred --------HHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 043533 214 --------KILKKRREAIASNGERGKVIIIDIVINA 241 (301)
Q Consensus 214 --------~iL~~~~~aL~p~~~gg~l~i~e~~~~~ 241 (301)
...+.+.+.||| +|.+-.+.-...+
T Consensus 179 ~e~yEdl~~~hqh~~rLLkP---~gv~SyfNg~~~~ 211 (271)
T KOG1709|consen 179 SELYEDLRHFHQHVVRLLKP---EGVFSYFNGLGAD 211 (271)
T ss_pred hhHHHHHHHHHHHHhhhcCC---CceEEEecCcccc
Confidence 777888999999 7866665544333
No 237
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.08 E-value=0.0023 Score=57.38 Aligned_cols=86 Identities=15% Similarity=0.240 Sum_probs=65.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCCCCC-----C-cchhHH
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE--------ADNLKYIAGDMLRFI-----P-PANAFL 212 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~--------~~ri~~~~~D~~~~~-----p-~~D~i~ 212 (301)
...++|||+=|=||.++...+... ..+++.+|. ..+++.+++ .++++|+.+|+|+.+ . .||+|+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 456899999999999999877543 457999999 677776664 478999999998622 1 299999
Q ss_pred H-----------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 213 F-----------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 213 ~-----------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
+ ++++.+.+.|+| ||.|+.+..
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~---gG~l~~~sc 239 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKP---GGLLLTCSC 239 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEEE---EEEEEEEE-
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcCC---CCEEEEEcC
Confidence 8 889999999999 776655443
No 238
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.86 E-value=0.25 Score=41.77 Aligned_cols=132 Identities=9% Similarity=0.043 Sum_probs=91.8
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-h----HHHhcCCCCCCeEEEeCCCCCCCC------cchhHHH--
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-P----HAVANLPEADNLKYIAGDMLRFIP------PANAFLF-- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p----~~~~~a~~~~ri~~~~~D~~~~~p------~~D~i~~-- 213 (301)
+.+..+||=+|..+|.....+..-.++-.+.+++. | +.++.+.+.+||--+-+|+..|.. ..|+|+.
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DV 153 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQDV 153 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEec
Confidence 78889999999999999999999888777888887 3 456666667888777889876531 2688776
Q ss_pred -------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeE
Q 043533 214 -------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYK 286 (301)
Q Consensus 214 -------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 286 (301)
-+..++..-|++ ||.+++.=-...-+.+.++ ... ..+-.+-|++.||++.+
T Consensus 154 AQp~Qa~I~~~Na~~FLk~---~G~~~i~iKArSIdvT~dp----~~v---------------f~~ev~kL~~~~f~i~e 211 (231)
T COG1889 154 AQPNQAEILADNAEFFLKK---GGYVVIAIKARSIDVTADP----EEV---------------FKDEVEKLEEGGFEILE 211 (231)
T ss_pred CCchHHHHHHHHHHHhccc---CCeEEEEEEeecccccCCH----HHH---------------HHHHHHHHHhcCceeeE
Confidence 566778888998 7766654333322222110 011 11224567888999999
Q ss_pred EEecC---CceeEEEEe
Q 043533 287 ITPIF---GMKSLIEVY 300 (301)
Q Consensus 287 ~~~~~---~~~~~i~a~ 300 (301)
+..+. -.+.+|.++
T Consensus 212 ~~~LePye~DH~~i~~~ 228 (231)
T COG1889 212 VVDLEPYEKDHALIVAK 228 (231)
T ss_pred EeccCCcccceEEEEEe
Confidence 88873 357777765
No 239
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=95.81 E-value=0.012 Score=53.91 Aligned_cols=90 Identities=22% Similarity=0.233 Sum_probs=73.1
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC--CC-CcchhHHH---
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR--FI-PPANAFLF--- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~--~~-p~~D~i~~--- 213 (301)
..+.+|||.=+|.|.+++.++++..- +++.+|+ |+.++.+++ .++|+.+.||..+ +. +.+|-|+|
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 34799999999999999999988643 3999999 888877664 5679999999987 33 44999998
Q ss_pred ----HHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 043533 214 ----KILKKRREAIASNGERGKVIIIDIVINA 241 (301)
Q Consensus 214 ----~iL~~~~~aL~p~~~gg~l~i~e~~~~~ 241 (301)
+.+..+.+.+++ ||.+..++..-.+
T Consensus 266 ~~a~~fl~~A~~~~k~---~g~iHyy~~~~e~ 294 (341)
T COG2520 266 KSAHEFLPLALELLKD---GGIIHYYEFVPED 294 (341)
T ss_pred CcchhhHHHHHHHhhc---CcEEEEEeccchh
Confidence 799999999999 7877777765443
No 240
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.75 E-value=0.025 Score=51.19 Aligned_cols=65 Identities=25% Similarity=0.281 Sum_probs=49.7
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCC
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDML 202 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~ 202 (301)
..+++ +.+. ..+.+.+||.=-|.|..+.+++++.|+.+++++|. |.+++.+++ .+|+.++.++|-
T Consensus 9 l~Evl-~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~ 79 (310)
T PF01795_consen 9 LKEVL-EALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFS 79 (310)
T ss_dssp HHHHH-HHHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GG
T ss_pred HHHHH-HhhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHH
Confidence 45567 6666 66778999999999999999999999999999999 999877764 689999998875
No 241
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=95.55 E-value=0.05 Score=49.72 Aligned_cols=86 Identities=12% Similarity=0.087 Sum_probs=67.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeC-CCCC-CCCc--chhHHH--
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAG-DMLR-FIPP--ANAFLF-- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~-D~~~-~~p~--~D~i~~-- 213 (301)
...+..|+|==||||.++++..-- ++++++.|+ ..|+..++. -+...+..+ |+.+ |+++ +|.|..
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP 272 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP 272 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence 345679999999999999998755 789999999 778888875 134444555 8877 7876 888776
Q ss_pred ------------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 214 ------------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 ------------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
++|..++++|++ ||++.+.-+
T Consensus 273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~---gG~~vf~~p 311 (347)
T COG1041 273 PYGRSTKIKGEGLDELYEEALESASEVLKP---GGRIVFAAP 311 (347)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHhhc---CcEEEEecC
Confidence 899999999999 887665543
No 242
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.53 E-value=0.033 Score=51.57 Aligned_cols=75 Identities=12% Similarity=0.075 Sum_probs=57.3
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCC---------------------------------------eE
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGI---------------------------------------KC 176 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~---------------------------------------~~ 176 (301)
..++ ..-. |.+...++|==||+|.++++.+-..+++ .+
T Consensus 181 aAil-~lag--w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~ 257 (381)
T COG0116 181 AAIL-LLAG--WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPII 257 (381)
T ss_pred HHHH-HHcC--CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceE
Confidence 4455 4445 5555899999999999999988877532 26
Q ss_pred EEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC--cchhHHH
Q 043533 177 TVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FIP--PANAFLF 213 (301)
Q Consensus 177 ~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~p--~~D~i~~ 213 (301)
+++|+ +.+++.|+. .+.|+|..+|+.. +-| ++|+|++
T Consensus 258 ~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~ 305 (381)
T COG0116 258 YGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVIS 305 (381)
T ss_pred EEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEe
Confidence 79999 899988874 6889999999875 333 4888887
No 243
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=95.50 E-value=0.13 Score=49.24 Aligned_cols=109 Identities=15% Similarity=0.263 Sum_probs=76.2
Q ss_pred hhHHhhcCchHHHHHHHHhhcccccchHHHHHhhhhhc-ccCCCeEEEecCCccHHHHHHHHH----CCCCeEEEeec-h
Q 043533 109 FWEFMNQNPAINQRFNEAMASDSEIMTSFVVKSECKQI-FEGLGSLVDVGGGNVSFSRIISEA----FPGIKCTVLDL-P 182 (301)
Q Consensus 109 ~~e~~~~~~~~~~~f~~am~~~~~~~~~~~~~~~~~~~-~~~~~~vlDvGgG~G~~~~~l~~~----~P~~~~~~~Dl-p 182 (301)
.|+.+++||--=..|++|.- ..++ +..+.+ .+....|+-+|+|.|-+..+.+++ ...++.++++- |
T Consensus 334 TYetFEkD~VKY~~Yq~Ai~-------~AL~-Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNP 405 (649)
T KOG0822|consen 334 TYETFEKDPVKYDQYQQAIL-------KALL-DRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNP 405 (649)
T ss_pred hhhhhhccchHHHHHHHHHH-------HHHH-hhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCc
Confidence 46667777755455666542 3345 554421 112457889999999988776664 34567888887 7
Q ss_pred HHHhcCCC------CCCeEEEeCCCCC-CCC-c-chhHHH-------------HHHHHHHHhccc
Q 043533 183 HAVANLPE------ADNLKYIAGDMLR-FIP-P-ANAFLF-------------KILKKRREAIAS 225 (301)
Q Consensus 183 ~~~~~a~~------~~ri~~~~~D~~~-~~p-~-~D~i~~-------------~iL~~~~~aL~p 225 (301)
.++-.... .+||+++..||.+ .-| + +|+++. +.|.-+-+.|+|
T Consensus 406 NAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkp 470 (649)
T KOG0822|consen 406 NAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSELLGSFGDNELSPECLDGAQKFLKP 470 (649)
T ss_pred chhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHHhhccccCccCCHHHHHHHHhhcCC
Confidence 76655543 7899999999988 555 4 999998 778888888888
No 244
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=95.47 E-value=0.18 Score=44.65 Aligned_cols=132 Identities=15% Similarity=0.116 Sum_probs=81.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCC---------CCCCeEEEeCCCCCCC-------------
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLP---------EADNLKYIAGDMLRFI------------- 205 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~---------~~~ri~~~~~D~~~~~------------- 205 (301)
.+...||.+|||-=.....+... +++++.=+|+|++++.-+ ..+++.++..|+...+
T Consensus 80 ~g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 80 AGIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred cCCcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 34678999999998888887422 367888888899876332 1578899999986321
Q ss_pred Cc---chhHHH--------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhc----hhhccccCCccCCH
Q 043533 206 PP---ANAFLF--------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFD----IVMSVNATGKERTE 270 (301)
Q Consensus 206 p~---~D~i~~--------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d----~~~~~~~~g~~rt~ 270 (301)
|. ...+++ ++|+.+.+...| |..+++|.+.+-..... ......... ..+-.... ..+.
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~----gs~l~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~ 231 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAP----GSRLAFDYVRPLDGEWR-AGMRAPVYHAARGVDGSGLVF--GIDR 231 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCC----CcEEEEEeccccchhHH-HHHHHHHHHhhhccccccccc--CCCh
Confidence 11 122222 889999888777 45667777655221110 000000010 00000111 2467
Q ss_pred HHHHHHHHhCCCceeEE
Q 043533 271 SEWAKLFFDAVFSHYKI 287 (301)
Q Consensus 271 ~e~~~ll~~aGf~~~~~ 287 (301)
++..++|++.||+....
T Consensus 232 ~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 232 ADVAEWLAERGWRASEH 248 (260)
T ss_pred hhHHHHHHHCCCeeecC
Confidence 99999999999998876
No 245
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=95.47 E-value=0.087 Score=45.21 Aligned_cols=131 Identities=11% Similarity=0.043 Sum_probs=86.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-h----HHHhcCCCCCCeEEEeCCCCCCC------CcchhHHH-
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEA-FPGIKCTVLDL-P----HAVANLPEADNLKYIAGDMLRFI------PPANAFLF- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~-~P~~~~~~~Dl-p----~~~~~a~~~~ri~~~~~D~~~~~------p~~D~i~~- 213 (301)
+....+||-+|..+|.+...+..- .|+-.+.+++. | +.+..|++.+||--+-.|+..|. +..|+|+.
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec
Confidence 677889999999999999999985 55888899998 4 45666666788888889998752 12788887
Q ss_pred --------HHHHHHHHhcccCCCCcEEEEEeeeeCCCcc-chhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCce
Q 043533 214 --------KILKKRREAIASNGERGKVIIIDIVINAEEE-EHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSH 284 (301)
Q Consensus 214 --------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~-~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~ 284 (301)
-++.++..-||+ ||.++|.=-...-+.. .+ ... ..+=.+.|++.||+.
T Consensus 151 VaQp~Qa~I~~~Na~~fLk~---gG~~~i~iKa~siD~t~~p-----~~v---------------f~~e~~~L~~~~~~~ 207 (229)
T PF01269_consen 151 VAQPDQARIAALNARHFLKP---GGHLIISIKARSIDSTADP-----EEV---------------FAEEVKKLKEEGFKP 207 (229)
T ss_dssp -SSTTHHHHHHHHHHHHEEE---EEEEEEEEEHHHH-SSSSH-----HHH---------------HHHHHHHHHCTTCEE
T ss_pred CCChHHHHHHHHHHHhhccC---CcEEEEEEecCcccCcCCH-----HHH---------------HHHHHHHHHHcCCCh
Confidence 566777789999 8877775322111111 11 001 122245678899999
Q ss_pred eEEEecCC---ceeEEEEe
Q 043533 285 YKITPIFG---MKSLIEVY 300 (301)
Q Consensus 285 ~~~~~~~~---~~~~i~a~ 300 (301)
.+...+.. .+.++.++
T Consensus 208 ~e~i~LePy~~dH~~vv~~ 226 (229)
T PF01269_consen 208 LEQITLEPYERDHAMVVGR 226 (229)
T ss_dssp EEEEE-TTTSTTEEEEEEE
T ss_pred heEeccCCCCCCcEEEEEE
Confidence 99888843 46666654
No 246
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.43 E-value=0.051 Score=46.97 Aligned_cols=139 Identities=9% Similarity=0.049 Sum_probs=86.7
Q ss_pred HHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec--hHHHhcCCCCCCeEEEeC-CCCC----CCC---c
Q 043533 138 VVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL--PHAVANLPEADNLKYIAG-DMLR----FIP---P 207 (301)
Q Consensus 138 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl--p~~~~~a~~~~ri~~~~~-D~~~----~~p---~ 207 (301)
.+ +.|+ -..+.+.+||||..||.++..++++. ..++.++|. .+.....+..+||..+.. |+.. .+. +
T Consensus 70 al-e~F~-l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d 146 (245)
T COG1189 70 AL-EEFE-LDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPD 146 (245)
T ss_pred HH-HhcC-cCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCC
Confidence 44 5554 12457899999999999999999885 457999998 555556666778766554 5542 122 2
Q ss_pred ---chhHHH---HHHHHHHHhcccCCCCcEEEE-EeeeeCCCccchhhhhhhhhhchhh-ccccCCccCCHHHHHHHHHh
Q 043533 208 ---ANAFLF---KILKKRREAIASNGERGKVII-IDIVINAEEEEHELTETKFLFDIVM-SVNATGKERTESEWAKLFFD 279 (301)
Q Consensus 208 ---~D~i~~---~iL~~~~~aL~p~~~gg~l~i-~e~~~~~~~~~~~~~~~~~~~d~~~-~~~~~g~~rt~~e~~~ll~~ 279 (301)
.|+=++ .+|-.+...++| ++-++. +-+-....+. ...-.- ........+...++.+++.+
T Consensus 147 ~~v~DvSFISL~~iLp~l~~l~~~---~~~~v~LvKPQFEagr~---------~v~kkGvv~d~~~~~~v~~~i~~~~~~ 214 (245)
T COG1189 147 LIVIDVSFISLKLILPALLLLLKD---GGDLVLLVKPQFEAGRE---------QVGKKGVVRDPKLHAEVLSKIENFAKE 214 (245)
T ss_pred eEEEEeehhhHHHHHHHHHHhcCC---CceEEEEecchhhhhhh---------hcCcCceecCcchHHHHHHHHHHHHhh
Confidence 344333 999999999998 554443 3332222111 111000 00112234456788999999
Q ss_pred CCCceeEEEecC
Q 043533 280 AVFSHYKITPIF 291 (301)
Q Consensus 280 aGf~~~~~~~~~ 291 (301)
.||+...+...+
T Consensus 215 ~g~~~~gl~~Sp 226 (245)
T COG1189 215 LGFQVKGLIKSP 226 (245)
T ss_pred cCcEEeeeEccC
Confidence 999999887653
No 247
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.41 E-value=0.013 Score=46.68 Aligned_cols=99 Identities=17% Similarity=0.172 Sum_probs=70.2
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCC
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FIP 206 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~p 206 (301)
+.++ +.+. -.+..+.+|+|.|.|....+.++.. -...+++++ |..+...+- +.+..|..-|.++ ++.
T Consensus 62 ~nVL-Sll~--~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~ 137 (199)
T KOG4058|consen 62 ENVL-SLLR--GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR 137 (199)
T ss_pred HHHH-HHcc--CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc
Confidence 3355 5554 3445799999999999888888775 456889999 776665542 6778899999998 777
Q ss_pred cch--hHHH------HHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 043533 207 PAN--AFLF------KILKKRREAIASNGERGKVIIIDIVINA 241 (301)
Q Consensus 207 ~~D--~i~~------~iL~~~~~aL~p~~~gg~l~i~e~~~~~ 241 (301)
+|. +|+. .+-.+++.-|+. |.+++-.-+-+|+
T Consensus 138 dy~~vviFgaes~m~dLe~KL~~E~p~---nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 138 DYRNVVIFGAESVMPDLEDKLRTELPA---NTRVVACRFPLPT 177 (199)
T ss_pred ccceEEEeehHHHHhhhHHHHHhhCcC---CCeEEEEecCCCc
Confidence 643 2222 455566666676 7888888877765
No 248
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.39 E-value=0.036 Score=48.35 Aligned_cols=66 Identities=21% Similarity=0.203 Sum_probs=48.3
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCCc--chhHHH
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLRFIPP--ANAFLF 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~~~p~--~D~i~~ 213 (301)
+.+.+|+|||||.==++.-.....|+.+.+++|+ ...++.... +.+.++...|.....|. +|+.++
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLl 177 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALL 177 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEE
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhH
Confidence 4478999999999999998888889999999999 666665443 67788888899885443 898776
No 249
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=95.29 E-value=0.087 Score=40.82 Aligned_cols=85 Identities=16% Similarity=0.319 Sum_probs=57.5
Q ss_pred EEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-C--CC---eEEEeCCCCC---CCC---cchhHHH-----
Q 043533 153 LVDVGGGNVSFSRIISEAFPG-IKCTVLDL-PHAVANLPE-A--DN---LKYIAGDMLR---FIP---PANAFLF----- 213 (301)
Q Consensus 153 vlDvGgG~G~~~~~l~~~~P~-~~~~~~Dl-p~~~~~a~~-~--~r---i~~~~~D~~~---~~p---~~D~i~~----- 213 (301)
++|+|||+|... .+....+. ..++++|. +.++..+.. . .. +.+..+|... ++. .+|++..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999987 44444443 47888898 555555332 1 11 5777777653 333 2677622
Q ss_pred -----HHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 043533 214 -----KILKKRREAIASNGERGKVIIIDIVINA 241 (301)
Q Consensus 214 -----~iL~~~~~aL~p~~~gg~l~i~e~~~~~ 241 (301)
..++++.+.++| +|.+++.......
T Consensus 131 ~~~~~~~~~~~~~~l~~---~g~~~~~~~~~~~ 160 (257)
T COG0500 131 LLPPAKALRELLRVLKP---GGRLVLSDLLRDG 160 (257)
T ss_pred cCCHHHHHHHHHHhcCC---CcEEEEEeccCCC
Confidence 688999999999 7888877765443
No 250
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.29 E-value=0.016 Score=54.98 Aligned_cols=55 Identities=27% Similarity=0.393 Sum_probs=46.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR 203 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~ 203 (301)
..+..+|+|+=||.|.++..|+++ ..+++++++ ++.++.|+. -++++|+.+|.++
T Consensus 291 ~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~ 352 (432)
T COG2265 291 LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEE 352 (432)
T ss_pred hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHH
Confidence 556689999999999999999955 468999999 888887775 4569999999864
No 251
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=95.25 E-value=0.01 Score=52.76 Aligned_cols=87 Identities=13% Similarity=0.195 Sum_probs=67.3
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCC-eEEEeec-hHHHhcCCC----------CCCeEEEeCCCCC---CCCc--ch
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGI-KCTVLDL-PHAVANLPE----------ADNLKYIAGDMLR---FIPP--AN 209 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~-~~~~~Dl-p~~~~~a~~----------~~ri~~~~~D~~~---~~p~--~D 209 (301)
.++++.++-||||.|.+.....++ +.+ .+..+|+ ..+++..++ +++|.+..||-+. ..+. +|
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 567899999999999999999987 665 4777777 555555443 7899999999664 3433 88
Q ss_pred hHHH---------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 210 AFLF---------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 210 ~i~~---------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
+|+. ..+.-+.++|++ ||.+++..-
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~---dgv~~~q~e 237 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKG---DGVVCTQGE 237 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCC---CcEEEEecc
Confidence 8886 777888899999 787777653
No 252
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=95.20 E-value=0.027 Score=55.08 Aligned_cols=41 Identities=7% Similarity=0.056 Sum_probs=32.7
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCC--------CeEEEeec-hHHHhcCC
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPG--------IKCTVLDL-PHAVANLP 189 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~--------~~~~~~Dl-p~~~~~a~ 189 (301)
...+|+|.|||+|.++..++++.+. ..+.++|+ +.++..++
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~ 80 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAK 80 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHH
Confidence 4569999999999999999987652 56889999 66666554
No 253
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=95.17 E-value=0.0086 Score=39.03 Aligned_cols=29 Identities=24% Similarity=0.432 Sum_probs=22.8
Q ss_pred HHHHHHhHHhcC---CCCCHHHHHHhcC-CCCC
Q 043533 14 QGQAQLYKLIHG---RAITLSELVSALD-IQPT 42 (301)
Q Consensus 14 ~~~l~lF~~L~~---~p~t~~elA~~~~-~~~~ 42 (301)
+++|||||.|++ +|+|++|||.++. .++.
T Consensus 6 aveLgI~dii~~~g~~~ls~~eia~~l~~~~p~ 38 (51)
T PF08100_consen 6 AVELGIPDIIHNAGGGPLSLSEIAARLPTSNPS 38 (51)
T ss_dssp HHHTTHHHHHHHHTTS-BEHHHHHHTSTCT-TT
T ss_pred HHHcCcHHHHHHcCCCCCCHHHHHHHcCCCCcc
Confidence 579999999953 5999999999998 5544
No 254
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=94.97 E-value=0.046 Score=45.82 Aligned_cols=91 Identities=13% Similarity=0.168 Sum_probs=62.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCCcchhHHH-------
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLRFIPPANAFLF------- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~~~p~~D~i~~------- 213 (301)
.-..++|||+|.|+|..+++-++.. ...++..|. |..+..++- .-.|.+...|..-+-|.+|+++.
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~~ 155 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYNH 155 (218)
T ss_pred ccccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecCc
Confidence 4557899999999999999988875 345666676 555544432 45577888787653334888877
Q ss_pred ----HHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 043533 214 ----KILKKRREAIASNGERGKVIIIDIVINA 241 (301)
Q Consensus 214 ----~iL~~~~~aL~p~~~gg~l~i~e~~~~~ 241 (301)
+++. +...++.. |-.++|.++..+.
T Consensus 156 ~~a~~l~~-~~~~l~~~--g~~vlvgdp~R~~ 184 (218)
T COG3897 156 TEADRLIP-WKDRLAEA--GAAVLVGDPGRAY 184 (218)
T ss_pred hHHHHHHH-HHHHHHhC--CCEEEEeCCCCCC
Confidence 6666 66666651 6677777664443
No 255
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=94.94 E-value=0.072 Score=49.43 Aligned_cols=90 Identities=16% Similarity=0.238 Sum_probs=64.7
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCC--CeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC---CCCc---chhH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPG--IKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR---FIPP---ANAF 211 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~--~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~---~~p~---~D~i 211 (301)
...+.+|||+..+.|.=+..++..-++ ..++.+|. +.-+...++ ..++..+..|... ..+. ||.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 566799999999999999999998765 56689998 444433332 3446677777543 1222 7777
Q ss_pred HH---------------------------------HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 212 LF---------------------------------KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 212 ~~---------------------------------~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
++ +||.++.+.|+| ||.|+.....+
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~---GG~LVYSTCS~ 291 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKP---GGVLVYSTCSL 291 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEccCC
Confidence 76 999999999999 77666655433
No 256
>KOG2730 consensus Methylase [General function prediction only]
Probab=94.89 E-value=0.018 Score=49.09 Aligned_cols=53 Identities=23% Similarity=0.301 Sum_probs=44.9
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR 203 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~ 203 (301)
....|+|.-||.|...+..+.++| .++.+|+ |.-+.-|+. .+||+|++||+++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence 568999999999999999999987 4888898 776666653 6799999999974
No 257
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=94.77 E-value=0.036 Score=46.35 Aligned_cols=86 Identities=15% Similarity=0.183 Sum_probs=61.7
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-----CCC-cchhHHH--
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-----FIP-PANAFLF-- 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-----~~p-~~D~i~~-- 213 (301)
+.++||+=+|+|.++.+.+.++ ..+++.+|. ..+...+++ ..++.++..|... .-. .||+|++
T Consensus 44 g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP 122 (187)
T COG0742 44 GARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP 122 (187)
T ss_pred CCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC
Confidence 6899999999999999999986 458999998 555555543 4788888888763 112 2899888
Q ss_pred ----HH------HHH--HHHhcccCCCCcEEEEEeeeeC
Q 043533 214 ----KI------LKK--RREAIASNGERGKVIIIDIVIN 240 (301)
Q Consensus 214 ----~i------L~~--~~~aL~p~~~gg~l~i~e~~~~ 240 (301)
.+ +.. -...|+| +.++++|....
T Consensus 123 Py~~~l~~~~~~~~~~~~~~~L~~----~~~iv~E~~~~ 157 (187)
T COG0742 123 PYAKGLLDKELALLLLEENGWLKP----GALIVVEHDKD 157 (187)
T ss_pred CCccchhhHHHHHHHHHhcCCcCC----CcEEEEEeCCC
Confidence 11 112 2355888 55888887544
No 258
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=94.64 E-value=0.071 Score=45.32 Aligned_cols=89 Identities=16% Similarity=0.219 Sum_probs=49.4
Q ss_pred CCCeEEEecCCccH---HHHHHHHHC-CCCeEEEeec--hHHHhcCCC----CCCeEEEeCCCCCC-----C------Cc
Q 043533 149 GLGSLVDVGGGNVS---FSRIISEAF-PGIKCTVLDL--PHAVANLPE----ADNLKYIAGDMLRF-----I------PP 207 (301)
Q Consensus 149 ~~~~vlDvGgG~G~---~~~~l~~~~-P~~~~~~~Dl--p~~~~~a~~----~~ri~~~~~D~~~~-----~------p~ 207 (301)
++..|+++|--.|. +...+++.. ++.+++++|+ +..-..+.+ .+||+++.||-.++ . |.
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 36899999965555 444556665 8899999999 222222222 58999999997642 1 11
Q ss_pred chhHHH----------HHHHHHHHhcccCCCCcEEEEEeeeeC
Q 043533 208 ANAFLF----------KILKKRREAIASNGERGKVIIIDIVIN 240 (301)
Q Consensus 208 ~D~i~~----------~iL~~~~~aL~p~~~gg~l~i~e~~~~ 240 (301)
..+|+. +.|+.....+++ |++++|.|....
T Consensus 112 ~vlVilDs~H~~~hvl~eL~~y~plv~~---G~Y~IVeDt~~~ 151 (206)
T PF04989_consen 112 PVLVILDSSHTHEHVLAELEAYAPLVSP---GSYLIVEDTIIE 151 (206)
T ss_dssp SEEEEESS----SSHHHHHHHHHHT--T---T-EEEETSHHHH
T ss_pred ceEEEECCCccHHHHHHHHHHhCccCCC---CCEEEEEecccc
Confidence 223332 788888888898 888877776543
No 259
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=94.60 E-value=0.017 Score=53.56 Aligned_cols=88 Identities=18% Similarity=0.195 Sum_probs=65.8
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-CCCc--chhHHH-----
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-FIPP--ANAFLF----- 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~~p~--~D~i~~----- 213 (301)
...++|+|||.|.....+..- -..+.+++|. +.-+.++.. .+...++.+|+.+ |+++ +|.+..
T Consensus 111 ~~~~~~~~~g~~~~~~~i~~f-~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~ 189 (364)
T KOG1269|consen 111 GSKVLDVGTGVGGPSRYIAVF-KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVC 189 (364)
T ss_pred cccccccCcCcCchhHHHHHh-ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecc
Confidence 347899999999998888754 3667888888 444433332 5667778889988 6776 776554
Q ss_pred ------HHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 043533 214 ------KILKKRREAIASNGERGKVIIIDIVINA 241 (301)
Q Consensus 214 ------~iL~~~~~aL~p~~~gg~l~i~e~~~~~ 241 (301)
..+++++++++| ||.+++.+.+...
T Consensus 190 ~~~~~~~~y~Ei~rv~kp---GG~~i~~e~i~~~ 220 (364)
T KOG1269|consen 190 HAPDLEKVYAEIYRVLKP---GGLFIVKEWIKTA 220 (364)
T ss_pred cCCcHHHHHHHHhcccCC---CceEEeHHHHHhh
Confidence 999999999999 8888877765443
No 260
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=94.45 E-value=0.23 Score=44.66 Aligned_cols=126 Identities=12% Similarity=0.062 Sum_probs=82.0
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec------hHHHhcCC-------------------------C--------
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL------PHAVANLP-------------------------E-------- 190 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl------p~~~~~a~-------------------------~-------- 190 (301)
..+||-=|||.|.++..|+..++.+++-=+-. .-++...+ .
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p 230 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHP 230 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccccc
Confidence 46899999999999999999999877631110 01111111 0
Q ss_pred ------CCCeEEEeCCCCC--CCCc----chhHHH-----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchh
Q 043533 191 ------ADNLKYIAGDMLR--FIPP----ANAFLF-----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHE 247 (301)
Q Consensus 191 ------~~ri~~~~~D~~~--~~p~----~D~i~~-----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~ 247 (301)
.+..+...|||.+ +.+. +|+|+. .-|+.|...|+| ||.++=+-+.+-.-...+
T Consensus 231 ~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~---GGvWiNlGPLlYHF~d~~- 306 (369)
T KOG2798|consen 231 ASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKP---GGVWINLGPLLYHFEDTH- 306 (369)
T ss_pred cccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccC---CcEEEeccceeeeccCCC-
Confidence 1235557799987 3333 787765 888999999999 786665544332221110
Q ss_pred hhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEEec
Q 043533 248 LTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 248 ~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 290 (301)
+. ..-.+-+.+.+++..+.+..||++.+-+.+
T Consensus 307 --------g~---~~~~siEls~edl~~v~~~~GF~~~ke~~I 338 (369)
T KOG2798|consen 307 --------GV---ENEMSIELSLEDLKRVASHRGFEVEKERGI 338 (369)
T ss_pred --------CC---cccccccccHHHHHHHHHhcCcEEEEeeee
Confidence 00 111244789999999999999999987654
No 261
>PRK10742 putative methyltransferase; Provisional
Probab=94.32 E-value=0.086 Score=46.11 Aligned_cols=73 Identities=21% Similarity=0.287 Sum_probs=53.7
Q ss_pred HHHHHhhhhhcccCCC--eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------------CCCeEEE
Q 043533 136 SFVVKSECKQIFEGLG--SLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE---------------ADNLKYI 197 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~--~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~---------------~~ri~~~ 197 (301)
+.++ +++. +.+.. +|||+=+|+|..++.++.+ +++++.+|. |.+....+. ..|++++
T Consensus 76 ~~l~-kAvg--lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~ 150 (250)
T PRK10742 76 EAVA-KAVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLI 150 (250)
T ss_pred cHHH-HHhC--CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEE
Confidence 4567 7776 55555 9999999999999999988 678999998 443322211 1579999
Q ss_pred eCCCCC---CCCc-chhHHH
Q 043533 198 AGDMLR---FIPP-ANAFLF 213 (301)
Q Consensus 198 ~~D~~~---~~p~-~D~i~~ 213 (301)
.+|..+ ..+. ||+|++
T Consensus 151 ~~da~~~L~~~~~~fDVVYl 170 (250)
T PRK10742 151 HASSLTALTDITPRPQVVYL 170 (250)
T ss_pred eCcHHHHHhhCCCCCcEEEE
Confidence 998765 2344 899887
No 262
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=94.32 E-value=0.038 Score=52.73 Aligned_cols=58 Identities=19% Similarity=0.359 Sum_probs=46.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCCCC
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRFIP 206 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~~p 206 (301)
++..+.++||-||||.++.++++.. .+++++++ |+.++-|+. -.+++|+.|-..+.+|
T Consensus 381 l~~~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~ 445 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFP 445 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhccc--cceeeeecChhhcchhhhcchhcCccceeeeecchhhccc
Confidence 6667899999999999999999774 67999998 888888775 4789999995444333
No 263
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=0.57 Score=42.15 Aligned_cols=136 Identities=13% Similarity=0.145 Sum_probs=87.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC--CCCeEEEeechHHHhcCCC----------------------------CCCeEE
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAF--PGIKCTVLDLPHAVANLPE----------------------------ADNLKY 196 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~--P~~~~~~~Dlp~~~~~a~~----------------------------~~ri~~ 196 (301)
+.+...|+-+|||.-.+...|...+ +.++++=+|.|+++..=-. .+|...
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~ 164 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL 164 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence 5667899999999999999999988 7889999999887653210 234445
Q ss_pred EeCCCCC---------------CCCc---chhHHH--------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhh
Q 043533 197 IAGDMLR---------------FIPP---ANAFLF--------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTE 250 (301)
Q Consensus 197 ~~~D~~~---------------~~p~---~D~i~~--------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~ 250 (301)
+..|..+ .+|. +.++++ .+++.+.+.... +.+++.|.+.+.++-+.-+..
T Consensus 165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~----a~fv~YEQi~~~D~Fg~vM~~ 240 (335)
T KOG2918|consen 165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFEN----AHFVNYEQINPNDRFGKVMLA 240 (335)
T ss_pred eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCc----ccEEEEeccCCCChHHHHHHH
Confidence 5555441 1121 122222 777888877775 789999998876654421110
Q ss_pred hhhhhchhhccccCC--ccCCHHHHHHHHHhCCCceeEEEec
Q 043533 251 TKFLFDIVMSVNATG--KERTESEWAKLFFDAVFSHYKITPI 290 (301)
Q Consensus 251 ~~~~~d~~~~~~~~g--~~rt~~e~~~ll~~aGf~~~~~~~~ 290 (301)
.+.....- ..| .-.|.+..++-+.++||+.+.+..+
T Consensus 241 --nlk~r~~~--L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 241 --NLKRRGCP--LHGLETYNSIESQRSRFLKAGWEYVIAVDM 278 (335)
T ss_pred --HHHhcCCC--CchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence 01111100 011 1247888999999999999987665
No 264
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=94.14 E-value=0.024 Score=50.88 Aligned_cols=89 Identities=15% Similarity=0.166 Sum_probs=64.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCCC----CCc-chhHHH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLRF----IPP-ANAFLF 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~~----~p~-~D~i~~ 213 (301)
......|||+.++.|.=+..++...+ ..++++.|. ++-+...++ ..++.....|.... .+. ||.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 45667899999999999999999877 678999998 554444432 45666666665432 122 565554
Q ss_pred ---------------------------------HHHHHHHHhc----ccCCCCcEEEEEeee
Q 043533 214 ---------------------------------KILKKRREAI----ASNGERGKVIIIDIV 238 (301)
Q Consensus 214 ---------------------------------~iL~~~~~aL----~p~~~gg~l~i~e~~ 238 (301)
++|+++.+.+ +| ||+++.....
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~---gG~lvYsTCS 221 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKP---GGRLVYSTCS 221 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEE---EEEEEEEESH
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccC---CCeEEEEecc
Confidence 9999999999 99 7776665543
No 265
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.12 E-value=0.042 Score=41.48 Aligned_cols=32 Identities=25% Similarity=0.349 Sum_probs=26.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL 181 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl 181 (301)
......+|||||.|.+.--|.+. +-++.++|.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 34678999999999999999887 456888886
No 266
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=93.78 E-value=0.61 Score=37.37 Aligned_cols=84 Identities=17% Similarity=0.186 Sum_probs=48.8
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-----hHHHhcCCC----------------CCCeEEEeCCCCCCCCcc
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-----PHAVANLPE----------------ADNLKYIAGDMLRFIPPA 208 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-----p~~~~~a~~----------------~~ri~~~~~D~~~~~p~~ 208 (301)
...|+|+|=|.|.+=-.|.+.+|+-++.++|. |+.+..... +..+.+...|+=.-.++-
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~tl~~~~~~g~~a~laHaD~G~g~~~~ 108 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPPEEDLILGDIRETLPALARFGAGAALAHADIGTGDKEK 108 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---GGGEEES-HHHHHHHHHHH-S-EEEEEE----S-HHH
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCchHheeeccHHHHhHHHHhcCCceEEEEeecCCCCcch
Confidence 47999999999999999999999999999997 444333321 456777777774444456
Q ss_pred hhHHHHHHH-HHHHhcccCCCCcEEEEEee
Q 043533 209 NAFLFKILK-KRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 209 D~i~~~iL~-~~~~aL~p~~~gg~l~i~e~ 237 (301)
|+.+..-|. -+..+|.| |.++|...
T Consensus 109 d~a~a~~lspli~~~la~----gGi~vS~~ 134 (160)
T PF12692_consen 109 DDATAAWLSPLIAPVLAP----GGIMVSGQ 134 (160)
T ss_dssp HHHHHHHHHHHHGGGEEE----EEEEEESS
T ss_pred hHHHHHhhhHHHHHHhcC----CcEEEeCC
Confidence 777774444 45577888 45666554
No 267
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=93.38 E-value=0.45 Score=41.37 Aligned_cols=76 Identities=14% Similarity=0.115 Sum_probs=46.7
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEeCCCCCCCCc-----chhHHH----
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----ADNLKYIAGDMLRFIPP-----ANAFLF---- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----~~ri~~~~~D~~~~~p~-----~D~i~~---- 213 (301)
.+++||=||=. =..+++++-.++..+++++|+ ..+++...+ +-.|+.+..|+.+|+|. ||+++.
T Consensus 44 ~gk~il~lGDD-DLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPy 122 (243)
T PF01861_consen 44 EGKRILFLGDD-DLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPPY 122 (243)
T ss_dssp TT-EEEEES-T-T-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---S
T ss_pred cCCEEEEEcCC-cHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCCC
Confidence 35889999843 345556666677789999999 666665543 44499999999998884 899887
Q ss_pred ------HHHHHHHHhccc
Q 043533 214 ------KILKKRREAIAS 225 (301)
Q Consensus 214 ------~iL~~~~~aL~p 225 (301)
-.+.+..++|+.
T Consensus 123 T~~G~~LFlsRgi~~Lk~ 140 (243)
T PF01861_consen 123 TPEGLKLFLSRGIEALKG 140 (243)
T ss_dssp SHHHHHHHHHHHHHTB-S
T ss_pred CHHHHHHHHHHHHHHhCC
Confidence 788999999997
No 268
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.28 E-value=0.23 Score=45.52 Aligned_cols=90 Identities=13% Similarity=0.118 Sum_probs=64.7
Q ss_pred cccCCCeEEEecC-CccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeC---CCCCCCCc-chhHHH----HH
Q 043533 146 IFEGLGSLVDVGG-GNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAG---DMLRFIPP-ANAFLF----KI 215 (301)
Q Consensus 146 ~~~~~~~vlDvGg-G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~---D~~~~~p~-~D~i~~----~i 215 (301)
+..+..+|+=+|. |.|.++..++++.- .+++++|. ++-.+.|++-..-.++.. |..+..+. +|+++- ..
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~~~~ 241 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVGPAT 241 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCChhh
Confidence 3566777777775 57789999999764 99999999 777777776333333332 33333444 787765 88
Q ss_pred HHHHHHhcccCCCCcEEEEEeeee
Q 043533 216 LKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 216 L~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
+....+.|++ ||+++++-...
T Consensus 242 ~~~~l~~l~~---~G~~v~vG~~~ 262 (339)
T COG1064 242 LEPSLKALRR---GGTLVLVGLPG 262 (339)
T ss_pred HHHHHHHHhc---CCEEEEECCCC
Confidence 8889999999 89999988753
No 269
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=92.40 E-value=0.074 Score=49.33 Aligned_cols=50 Identities=28% Similarity=0.411 Sum_probs=38.5
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCC
Q 043533 151 GSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDML 202 (301)
Q Consensus 151 ~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~ 202 (301)
..|||+=||.|.++..|++.. -+++++|. +++++.|+. -++++|+.++..
T Consensus 198 ~~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~ 254 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAE 254 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SH
T ss_pred CcEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeecc
Confidence 389999999999999999876 47999999 888888774 468999987763
No 270
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=92.20 E-value=0.16 Score=48.48 Aligned_cols=83 Identities=18% Similarity=0.294 Sum_probs=56.6
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-----hHHHhcCCCCCCeEEEeCCCCCC---CCc-chhHHH----
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-----PHAVANLPEADNLKYIAGDMLRF---IPP-ANAFLF---- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-----p~~~~~a~~~~ri~~~~~D~~~~---~p~-~D~i~~---- 213 (301)
....+.|+|...|.|.++.+|.+. | +.++.. +..+..+-...=|-. -+|+.++ +|. ||++..
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~-~---VWVMNVVP~~~~ntL~vIydRGLIG~-yhDWCE~fsTYPRTYDLlHA~~lf 437 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDD-P---VWVMNVVPVSGPNTLPVIYDRGLIGV-YHDWCEAFSTYPRTYDLLHADGLF 437 (506)
T ss_pred ccceeeeeeecccccHHHHHhccC-C---ceEEEecccCCCCcchhhhhcccchh-ccchhhccCCCCcchhheehhhhh
Confidence 455789999999999999999754 2 444443 222222222222333 3588775 454 898886
Q ss_pred ----------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 214 ----------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 ----------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
.||-++-+.|+| ||.++|-|.
T Consensus 438 s~~~~rC~~~~illEmDRILRP---~G~~iiRD~ 468 (506)
T PF03141_consen 438 SLYKDRCEMEDILLEMDRILRP---GGWVIIRDT 468 (506)
T ss_pred hhhcccccHHHHHHHhHhhcCC---CceEEEecc
Confidence 889999999999 888877654
No 271
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.24 E-value=0.021 Score=46.36 Aligned_cols=85 Identities=12% Similarity=0.173 Sum_probs=55.5
Q ss_pred CCeEEEecCCccHHH-HHHHHHCCCCeEEEeec-hHHHhcCCC---------CCCeEEEeCCCCCC--C---CcchhHHH
Q 043533 150 LGSLVDVGGGNVSFS-RIISEAFPGIKCTVLDL-PHAVANLPE---------ADNLKYIAGDMLRF--I---PPANAFLF 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~-~~l~~~~P~~~~~~~Dl-p~~~~~a~~---------~~ri~~~~~D~~~~--~---p~~D~i~~ 213 (301)
++.||++|||.-.++ ..++...|...+.+-|- .+.++..++ ..+|..+..+.... + ..||+|++
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 478999999965554 45566778888888887 444444432 45665555554431 1 12665554
Q ss_pred -----------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 214 -----------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 -----------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
.+.+.|+..|+| .|+-+++.+
T Consensus 110 ADClFfdE~h~sLvdtIk~lL~p---~g~Al~fsP 141 (201)
T KOG3201|consen 110 ADCLFFDEHHESLVDTIKSLLRP---SGRALLFSP 141 (201)
T ss_pred ccchhHHHHHHHHHHHHHHHhCc---ccceeEecC
Confidence 788899999999 577555543
No 272
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.74 E-value=0.41 Score=43.29 Aligned_cols=135 Identities=13% Similarity=0.144 Sum_probs=79.8
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCC-CCeEEEeechHHHhcCCC---------CCCeEEEeCCCCC-CCCc------ch-
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFP-GIKCTVLDLPHAVANLPE---------ADNLKYIAGDMLR-FIPP------AN- 209 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P-~~~~~~~Dlp~~~~~a~~---------~~ri~~~~~D~~~-~~p~------~D- 209 (301)
.+...||-||||-=.-+-++- +| ++++.=+|+|++++.=++ ..++.+++.|+++ +++. ||
T Consensus 91 ~g~~qvViLgaGLDTRayRl~--~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~ 168 (297)
T COG3315 91 AGIRQVVILGAGLDTRAYRLD--WPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDR 168 (297)
T ss_pred hcccEEEEeccccccceeecC--CCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCc
Confidence 347899999999666555554 34 477777788999874332 3489999999995 5442 23
Q ss_pred ----hHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCcc-chh-hhhhhhhhchhhc-cccCCccCC
Q 043533 210 ----AFLF-------------KILKKRREAIASNGERGKVIIIDIVINAEEE-EHE-LTETKFLFDIVMS-VNATGKERT 269 (301)
Q Consensus 210 ----~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~-~~~-~~~~~~~~d~~~~-~~~~g~~rt 269 (301)
++++ ++|+.+....+| |. .++.+...++... ... ............. ....-....
T Consensus 169 ~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~---gS-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 244 (297)
T COG3315 169 SRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAP---GS-RVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDD 244 (297)
T ss_pred CCCeEEEeccccccCCHHHHHHHHHHHHHhCCC---Cc-eEEEeccccHHHHhcccchhhhhhccccccccccceeccCC
Confidence 2222 999999999998 55 5555543222111 100 0000000000000 001112346
Q ss_pred HHHHHHHHHhCCCceeEEE
Q 043533 270 ESEWAKLFFDAVFSHYKIT 288 (301)
Q Consensus 270 ~~e~~~ll~~aGf~~~~~~ 288 (301)
..|+..++.+.||......
T Consensus 245 ~~e~~~~l~~~g~~~~~~~ 263 (297)
T COG3315 245 PAEIETWLAERGWRSTLNR 263 (297)
T ss_pred HHHHHHHHHhcCEEEEecC
Confidence 8899999999999988763
No 273
>COG4742 Predicted transcriptional regulator [Transcription]
Probab=90.36 E-value=0.25 Score=43.50 Aligned_cols=50 Identities=16% Similarity=0.361 Sum_probs=43.7
Q ss_pred HHHHHhHHhcCCCCCHHHHHHhcCCCCCCce-----------eecCCCeEEcChhcchhhc
Q 043533 15 GQAQLYKLIHGRAITLSELVSALDIQPTKTT-----------VNGQEEAYGLTAASTLLIK 64 (301)
Q Consensus 15 ~~l~lF~~L~~~p~t~~elA~~~~~~~~~l~-----------ve~~~~~y~~t~~s~~L~~ 64 (301)
.|.+|.-.|.+||.|.+||-..+++++..+. |.++++.|.+|.++..++.
T Consensus 14 kRk~lLllL~egPkti~EI~~~l~vs~~ai~pqiKkL~~~~LV~~~~~~Y~LS~~G~iiv~ 74 (260)
T COG4742 14 KRKDLLLLLKEGPKTIEEIKNELNVSSSAILPQIKKLKDKGLVVQEGDRYSLSSLGKIIVE 74 (260)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHhCCCcHHHHHHHHHHhhCCCEEecCCEEEecchHHHHHH
Confidence 4888999999999999999999999999876 2677999999999986554
No 274
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.36 E-value=0.56 Score=40.43 Aligned_cols=53 Identities=25% Similarity=0.453 Sum_probs=37.2
Q ss_pred ccCCCeEEEecCCccHHHHHHHHH-CCCC--------eEEEeechHHHhcCCCCCCeEEEeCCCCC
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEA-FPGI--------KCTVLDLPHAVANLPEADNLKYIAGDMLR 203 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~-~P~~--------~~~~~Dlp~~~~~a~~~~ri~~~~~D~~~ 203 (301)
|.+.+++||+..-.|.++..|.++ +-.+ +++.+|+..|... +.|.-+++|+..
T Consensus 39 ~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI----~GV~qlq~DIT~ 100 (294)
T KOG1099|consen 39 FEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI----EGVIQLQGDITS 100 (294)
T ss_pred HhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc----CceEEeecccCC
Confidence 677899999999999999998876 2211 2899999666532 344445555543
No 275
>PRK01381 Trp operon repressor; Provisional
Probab=90.35 E-value=0.48 Score=35.22 Aligned_cols=39 Identities=10% Similarity=0.088 Sum_probs=33.0
Q ss_pred CChHHHHH--HHHHHhHHhcCCCCCHHHHHHhcCCCCCCce
Q 043533 7 QGAKELFQ--GQAQLYKLIHGRAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 7 ~~~~~~~~--~~l~lF~~L~~~p~t~~elA~~~~~~~~~l~ 45 (301)
.+|.|+-+ .|++|+..|..|.+|-.|||+.+|++...+.
T Consensus 33 lTp~Er~al~~R~~I~~~L~~g~~sQREIa~~lGvSiaTIT 73 (99)
T PRK01381 33 LTPDEREALGTRVRIVEELLRGELSQREIKQELGVGIATIT 73 (99)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHhCCceeeeh
Confidence 36777655 6999999999999999999999999877654
No 276
>TIGR01321 TrpR trp operon repressor, proteobacterial. This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.
Probab=89.60 E-value=0.56 Score=34.59 Aligned_cols=39 Identities=13% Similarity=0.131 Sum_probs=33.0
Q ss_pred CChHHHHH--HHHHHhHHhcCCCCCHHHHHHhcCCCCCCce
Q 043533 7 QGAKELFQ--GQAQLYKLIHGRAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 7 ~~~~~~~~--~~l~lF~~L~~~p~t~~elA~~~~~~~~~l~ 45 (301)
.++.|+.+ .|.+|+..|.++++|-.|||+++|++...+.
T Consensus 33 LTp~E~~~l~~R~~i~~~Ll~~~~tQrEIa~~lGiS~atIs 73 (94)
T TIGR01321 33 LTRSEREDLGDRIRIVNELLNGNMSQREIASKLGVSIATIT 73 (94)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhCCChhhhh
Confidence 46777655 5999999998899999999999999887665
No 277
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=88.62 E-value=0.7 Score=40.84 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=22.1
Q ss_pred HHHHHHHHCCCCeEEEeec-hHHHhcCCC
Q 043533 163 FSRIISEAFPGIKCTVLDL-PHAVANLPE 190 (301)
Q Consensus 163 ~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~ 190 (301)
++.+|.+++|+.+++++|. ++.++.+.+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~ 29 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALE 29 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHH
Confidence 4678889999999999999 777777643
No 278
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=88.27 E-value=0.57 Score=42.27 Aligned_cols=64 Identities=14% Similarity=0.273 Sum_probs=40.9
Q ss_pred CCCeEEEecCCccH-HHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeC----CCCCCC--C-c-chh
Q 043533 149 GLGSLVDVGGGNVS-FSRIISEAFPGIKCTVLDL-PHAVANLPE--------ADNLKYIAG----DMLRFI--P-P-ANA 210 (301)
Q Consensus 149 ~~~~vlDvGgG~G~-~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~--------~~ri~~~~~----D~~~~~--p-~-~D~ 210 (301)
...++||||+|.-. |.+.-++.| +.++++.|+ +..++.|++ .++|+++.. +++..+ + + +|+
T Consensus 102 ~~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~df 180 (299)
T PF05971_consen 102 EKVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDF 180 (299)
T ss_dssp ---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEE
T ss_pred cceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeE
Confidence 35789999999875 445555555 899999999 888887774 578988754 355532 2 2 888
Q ss_pred HHH
Q 043533 211 FLF 213 (301)
Q Consensus 211 i~~ 213 (301)
.++
T Consensus 181 tmC 183 (299)
T PF05971_consen 181 TMC 183 (299)
T ss_dssp EEE
T ss_pred Eec
Confidence 777
No 279
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=86.99 E-value=1.8 Score=38.11 Aligned_cols=84 Identities=21% Similarity=0.362 Sum_probs=49.9
Q ss_pred CCeEEEecCCccHHHHHH---HHHC--CCCeEEEeec----hHHHhc---------------------------CCC---
Q 043533 150 LGSLVDVGGGNVSFSRII---SEAF--PGIKCTVLDL----PHAVAN---------------------------LPE--- 190 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l---~~~~--P~~~~~~~Dl----p~~~~~---------------------------a~~--- 190 (301)
++.|+++|+-.|..++.+ ++.+ ++-++.++|. |+.-.. ..+
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 579999999999766544 3433 5667999996 332211 000
Q ss_pred -CCCeEEEeCCCCCCCCc------------chhHHH--HHHHHHHHhcccCCCCcEEEEEee
Q 043533 191 -ADNLKYIAGDMLRFIPP------------ANAFLF--KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 191 -~~ri~~~~~D~~~~~p~------------~D~i~~--~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
.+++.++.|+|.+.+|. .|+|=. ..|..++..|.| || ++|+|-
T Consensus 155 ~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlYesT~~aLe~lyprl~~---GG-iIi~DD 212 (248)
T PF05711_consen 155 LDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLYESTKDALEFLYPRLSP---GG-IIIFDD 212 (248)
T ss_dssp SSTTEEEEES-HHHHCCC-TT--EEEEEE---SHHHHHHHHHHHGGGEEE---EE-EEEESS
T ss_pred CcccEEEECCcchhhhccCCCccEEEEEEeccchHHHHHHHHHHHhhcCC---Ce-EEEEeC
Confidence 36899999998653332 366665 999999999999 55 555543
No 280
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=86.58 E-value=0.1 Score=39.66 Aligned_cols=68 Identities=10% Similarity=0.143 Sum_probs=31.3
Q ss_pred HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHh--CCCceeEEEecC
Q 043533 214 KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFD--AVFSHYKITPIF 291 (301)
Q Consensus 214 ~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~--aGf~~~~~~~~~ 291 (301)
.+++++++.|+| |.++|+|+-.... +....... -.+..+...-....+++.+.|.+ .||+.++....+
T Consensus 25 ~~f~~~~~~L~p----GG~lilEpQ~w~s-----Y~~~~~~~-~~~~~n~~~i~lrP~~F~~~L~~~evGF~~~e~~~~~ 94 (110)
T PF06859_consen 25 RFFRRIYSLLRP----GGILILEPQPWKS-----YKKAKRLS-EEIRENYKSIKLRPDQFEDYLLEPEVGFSSVEELGVP 94 (110)
T ss_dssp HHHHHHHHHEEE----EEEEEEE---HHH-----HHTTTTS--HHHHHHHHH----GGGHHHHHTSTTT---EEEEE---
T ss_pred HHHHHHHHhhCC----CCEEEEeCCCcHH-----HHHHhhhh-HHHHhHHhceEEChHHHHHHHHhcccceEEEEEcccC
Confidence 899999999999 5677888532211 10000000 00001111222345578888887 699998866553
No 281
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=85.66 E-value=2.2 Score=37.50 Aligned_cols=40 Identities=23% Similarity=0.399 Sum_probs=29.3
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCC
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLP 189 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~ 189 (301)
....||.+|+|+|.-++ ++......+++.-|+|.+++...
T Consensus 86 ~~~~vlELGsGtglvG~-~aa~~~~~~v~ltD~~~~~~~L~ 125 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGI-LAALLLGAEVVLTDLPKVVENLK 125 (248)
T ss_pred cceeEEEecCCccHHHH-HHHHHhcceeccCCchhhHHHHH
Confidence 46789999999995444 44444578899999977665444
No 282
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=85.44 E-value=0.75 Score=42.73 Aligned_cols=93 Identities=14% Similarity=0.186 Sum_probs=64.4
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec---hHHHhcCCC-------------CCCeEEEeCCCCCC------
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL---PHAVANLPE-------------ADNLKYIAGDMLRF------ 204 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl---p~~~~~a~~-------------~~ri~~~~~D~~~~------ 204 (301)
.......+|+|+|.|.....++...-.-+-+++.+ |.-+..... ...++.+.++|..+
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI 269 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEI 269 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHH
Confidence 66678999999999998888777654445555555 433322221 45688899999763
Q ss_pred CCcchhHHH----------HHHHHHHHhcccCCCCcEEEEEeeeeCCC
Q 043533 205 IPPANAFLF----------KILKKRREAIASNGERGKVIIIDIVINAE 242 (301)
Q Consensus 205 ~p~~D~i~~----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~ 242 (301)
++++++|++ .=+.++..-+++ |.+++-.+.+.+..
T Consensus 270 ~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~---gtrIiS~~~L~~r~ 314 (419)
T KOG3924|consen 270 QTEATVIFVNNVAFDPELKLRSKEILQKCKD---GTRIISSKPLVPRP 314 (419)
T ss_pred hhcceEEEEecccCCHHHHHhhHHHHhhCCC---cceEeccccccccc
Confidence 233777776 233477888888 88888888888743
No 283
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=85.30 E-value=0.76 Score=30.81 Aligned_cols=31 Identities=23% Similarity=0.438 Sum_probs=26.4
Q ss_pred HHHHHhHHh-cCCCCCHHHHHHhcCCCCCCce
Q 043533 15 GQAQLYKLI-HGRAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 15 ~~l~lF~~L-~~~p~t~~elA~~~~~~~~~l~ 45 (301)
+++.|++.| .++|.|+.|||+.+|++...+.
T Consensus 11 ~R~~Il~~L~~~~~~t~~ela~~l~~~~~t~s 42 (61)
T PF12840_consen 11 TRLRILRLLASNGPMTVSELAEELGISQSTVS 42 (61)
T ss_dssp HHHHHHHHHHHCSTBEHHHHHHHHTS-HHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHCCCHHHHH
Confidence 589999999 7899999999999998876554
No 284
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=85.21 E-value=1.7 Score=41.10 Aligned_cols=76 Identities=16% Similarity=0.121 Sum_probs=52.7
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-C-CCc--chhHHH---
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-F-IPP--ANAFLF--- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-~-~p~--~D~i~~--- 213 (301)
+..-|||||.|||.++...+++.-+ +++.++. ..|.+.|++ .++|+++.---.+ . .|. +|+++.
T Consensus 66 gkv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~f 144 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDF 144 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhh
Confidence 3457999999999999999999844 6888887 667776664 5778777643322 2 222 565554
Q ss_pred ----------HHHHHHHHhccc
Q 043533 214 ----------KILKKRREAIAS 225 (301)
Q Consensus 214 ----------~iL~~~~~aL~p 225 (301)
.-++++++.|..
T Consensus 145 dtEligeGalps~qhAh~~L~~ 166 (636)
T KOG1501|consen 145 DTELIGEGALPSLQHAHDMLLV 166 (636)
T ss_pred hhhhhccccchhHHHHHHHhcc
Confidence 566777777643
No 285
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=84.55 E-value=0.87 Score=28.80 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=25.2
Q ss_pred HHHHHhHHhcCCCCCHHHHHHhcCCCCCCc
Q 043533 15 GQAQLYKLIHGRAITLSELVSALDIQPTKT 44 (301)
Q Consensus 15 ~~l~lF~~L~~~p~t~~elA~~~~~~~~~l 44 (301)
.|+.|-..|.++|.++.|||+.++++...+
T Consensus 3 ~R~~Il~~L~~~~~~~~el~~~l~~s~~~v 32 (47)
T PF01022_consen 3 TRLRILKLLSEGPLTVSELAEELGLSQSTV 32 (47)
T ss_dssp HHHHHHHHHTTSSEEHHHHHHHHTS-HHHH
T ss_pred HHHHHHHHHHhCCCchhhHHHhccccchHH
Confidence 578889999999999999999999876544
No 286
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=80.06 E-value=1.6 Score=37.90 Aligned_cols=73 Identities=21% Similarity=0.247 Sum_probs=45.0
Q ss_pred HHHHHhhhhhcccCC--CeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCC--------C--------CCCeEEE
Q 043533 136 SFVVKSECKQIFEGL--GSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLP--------E--------ADNLKYI 197 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~--~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~--------~--------~~ri~~~ 197 (301)
+.++ +++. +.+. .+|||.=+|-|.=+..++.. +.++++++...++...- . ..||+++
T Consensus 63 ~~l~-kA~G--lk~~~~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~ 137 (234)
T PF04445_consen 63 DPLA-KAVG--LKPGMRPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLI 137 (234)
T ss_dssp SHHH-HHTT---BTTB---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEE
T ss_pred cHHH-HHhC--CCCCCCCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEE
Confidence 5577 7775 4443 49999999999999998865 67899999844433221 1 2589999
Q ss_pred eCCCCC--CCCc--chhHHH
Q 043533 198 AGDMLR--FIPP--ANAFLF 213 (301)
Q Consensus 198 ~~D~~~--~~p~--~D~i~~ 213 (301)
.+|..+ ..+. +|+|.+
T Consensus 138 ~~d~~~~L~~~~~s~DVVY~ 157 (234)
T PF04445_consen 138 HGDALEYLRQPDNSFDVVYF 157 (234)
T ss_dssp ES-CCCHCCCHSS--SEEEE
T ss_pred cCCHHHHHhhcCCCCCEEEE
Confidence 999877 3332 888887
No 287
>PF01371 Trp_repressor: Trp repressor protein; InterPro: IPR000831 The Trp repressor (TrpR) binds to at least five operators in the Escherichia coli genome, repressing gene expression. The operators at which it binds vary considerably in DNA sequence and location within the promoter; when bound to the Trp operon it recognises the sequence 5'-ACTAGT-3' and acts to prevent the initiation of transcription. The TrpR controls the trpEDCBA (trpO) operon and the genes for trpR, aroH, mtr and aroL, which are involved in the biosynthesis and uptake of the amino acid tryptophan []. The repressor binds to the operators only in the presence of L-tryptophan, thereby controlling the intracellular level of its effector; the complex also regulates Trp repressor biosynthesis by binding to its own regulatory region. TrpR acts as a dimer that is composed of identical 6-helical subunits, where four of the helices form the core of the protein and intertwine with the corresponding helices from the other subunit.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3FRW_H 3KOR_A 3SSW_N 1P6Z_N 1CO0_B 1JHG_A 1WRT_S 1WRS_R 1WRP_R 1RCS_B ....
Probab=78.83 E-value=2.9 Score=30.46 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=29.6
Q ss_pred ChHHHHH--HHHHHhH-HhcCCCCCHHHHHHhcCCCCCCce
Q 043533 8 GAKELFQ--GQAQLYK-LIHGRAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 8 ~~~~~~~--~~l~lF~-~L~~~p~t~~elA~~~~~~~~~l~ 45 (301)
++.|+.+ .|+.|+. .|. +..|..|||+.+|++...+.
T Consensus 28 T~~E~~~l~~R~~va~~lL~-~g~syreIa~~tgvS~aTIt 67 (87)
T PF01371_consen 28 TPDELEALAQRWQVAKELLD-EGKSYREIAEETGVSIATIT 67 (87)
T ss_dssp SHHHHHHHHHHHHHHHHHHH-TTSSHHHHHHHHTSTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHhCCCHHHHH
Confidence 6777765 6999999 665 67999999999999765443
No 288
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=78.70 E-value=1.5 Score=37.62 Aligned_cols=42 Identities=14% Similarity=0.123 Sum_probs=32.2
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCC-C-eEEEeec-hHHHhcCC
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPG-I-KCTVLDL-PHAVANLP 189 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~-~-~~~~~Dl-p~~~~~a~ 189 (301)
.++-++-|-.||+|.++..+.-.+++ + .+++-|+ +++++.|+
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~ 94 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELAR 94 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHH
Confidence 45679999999999999988877765 3 4888899 88887775
No 289
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=78.65 E-value=12 Score=28.86 Aligned_cols=82 Identities=16% Similarity=0.194 Sum_probs=53.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCC-C---CcchhHHH-----HHHHH
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLRF-I---PPANAFLF-----KILKK 218 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~ri~~~~~D~~~~-~---p~~D~i~~-----~iL~~ 218 (301)
...++|++||-|.=......++++ +..+++.|+.+- .++ ..++++.-|.++| + ..+|+|.+ .+.+.
T Consensus 12 ~~~gkVvEVGiG~~~~VA~~L~e~-g~dv~atDI~~~--~a~--~g~~~v~DDitnP~~~iY~~A~lIYSiRpppEl~~~ 86 (129)
T COG1255 12 NARGKVVEVGIGFFLDVAKRLAER-GFDVLATDINEK--TAP--EGLRFVVDDITNPNISIYEGADLIYSIRPPPELQSA 86 (129)
T ss_pred hcCCcEEEEccchHHHHHHHHHHc-CCcEEEEecccc--cCc--ccceEEEccCCCccHHHhhCccceeecCCCHHHHHH
Confidence 445699999887665444444444 378999999544 443 6889999999986 2 23788887 55555
Q ss_pred HHHhcccCCCCcEEEEEe
Q 043533 219 RREAIASNGERGKVIIID 236 (301)
Q Consensus 219 ~~~aL~p~~~gg~l~i~e 236 (301)
+.+.-+.. |..++|.-
T Consensus 87 ildva~aV--ga~l~I~p 102 (129)
T COG1255 87 ILDVAKAV--GAPLYIKP 102 (129)
T ss_pred HHHHHHhh--CCCEEEEe
Confidence 55554442 34455543
No 290
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=78.60 E-value=4.1 Score=37.88 Aligned_cols=36 Identities=31% Similarity=0.657 Sum_probs=32.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPH 183 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~ 183 (301)
+.+..+|+|||.|.|.++.-|.-.| ++.+.++|-.+
T Consensus 151 f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq 186 (476)
T KOG2651|consen 151 FTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQ 186 (476)
T ss_pred hcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccch
Confidence 7888999999999999999888777 88999999843
No 291
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=77.99 E-value=4.9 Score=37.17 Aligned_cols=88 Identities=19% Similarity=0.220 Sum_probs=62.6
Q ss_pred CeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--C-CCeEEEeCC-CC----C-CCC-cchhHHH-----
Q 043533 151 GSLVDVGGGN-VSFSRIISEAFPGIKCTVLDL-PHAVANLPE--A-DNLKYIAGD-ML----R-FIP-PANAFLF----- 213 (301)
Q Consensus 151 ~~vlDvGgG~-G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~--~-~ri~~~~~D-~~----~-~~p-~~D~i~~----- 213 (301)
.+|+=+|+|. |.++..+++.+...+++++|. ++-++.|++ . +.+.....+ .- + .-. .+|+++=
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~ 249 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSP 249 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCH
Confidence 3899999996 666688888898889999999 888888876 2 222222121 10 1 112 2676664
Q ss_pred HHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 043533 214 KILKKRREAIASNGERGKVIIIDIVINA 241 (301)
Q Consensus 214 ~iL~~~~~aL~p~~~gg~l~i~e~~~~~ 241 (301)
..+..+.++++| ||++.++-.....
T Consensus 250 ~~~~~ai~~~r~---gG~v~~vGv~~~~ 274 (350)
T COG1063 250 PALDQALEALRP---GGTVVVVGVYGGE 274 (350)
T ss_pred HHHHHHHHHhcC---CCEEEEEeccCCc
Confidence 789999999999 9999998876555
No 292
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=77.91 E-value=1 Score=35.89 Aligned_cols=64 Identities=25% Similarity=0.370 Sum_probs=38.7
Q ss_pred eEEEeec-hHHHhcCCC-------CCCeEEEeCCCC---CCCCc--chhHHH--------------------HHHHHHHH
Q 043533 175 KCTVLDL-PHAVANLPE-------ADNLKYIAGDML---RFIPP--ANAFLF--------------------KILKKRRE 221 (301)
Q Consensus 175 ~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~---~~~p~--~D~i~~--------------------~iL~~~~~ 221 (301)
++.+||+ +++++..++ .+|++++..+=. +-++. .|++++ ..|+++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 4678888 677766653 357777764321 11222 444433 89999999
Q ss_pred hcccCCCCcEEEEEeeeeCC
Q 043533 222 AIASNGERGKVIIIDIVINA 241 (301)
Q Consensus 222 aL~p~~~gg~l~i~e~~~~~ 241 (301)
.|+| ||.+.|+-..-.+
T Consensus 81 lL~~---gG~i~iv~Y~GH~ 97 (140)
T PF06962_consen 81 LLKP---GGIITIVVYPGHP 97 (140)
T ss_dssp HEEE---EEEEEEEE--STC
T ss_pred hhcc---CCEEEEEEeCCCC
Confidence 9999 8877777654333
No 293
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=77.11 E-value=1.5 Score=44.15 Aligned_cols=83 Identities=14% Similarity=0.190 Sum_probs=56.5
Q ss_pred CCeEEEecCCccHHHHHHHHHC-------C-----CCeEEEeec-h---HHHhcCC----------------------C-
Q 043533 150 LGSLVDVGGGNVSFSRIISEAF-------P-----GIKCTVLDL-P---HAVANLP----------------------E- 190 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~-------P-----~~~~~~~Dl-p---~~~~~a~----------------------~- 190 (301)
.-+|+|+|=|+|.......+.+ | .++++.++. | +.+..+. .
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 3689999999999777766544 4 478888885 2 1111110 0
Q ss_pred ------CC--CeEEEeCCCCCC---CCc-chhHHH--------------HHHHHHHHhcccCCCCcEEEEE
Q 043533 191 ------AD--NLKYIAGDMLRF---IPP-ANAFLF--------------KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 191 ------~~--ri~~~~~D~~~~---~p~-~D~i~~--------------~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
.+ ++++..||+.+- +.. +|++++ .+|+++++.++| ||++.-+
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~---~~~~~t~ 205 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARP---GATLATF 205 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCC---CCEEEEe
Confidence 12 344667887653 223 788887 999999999999 7877644
No 294
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=75.97 E-value=4.5 Score=35.81 Aligned_cols=35 Identities=20% Similarity=0.404 Sum_probs=31.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHC-----CCCeEEEeec
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAF-----PGIKCTVLDL 181 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~-----P~~~~~~~Dl 181 (301)
+.+...+++.|||.|.++..++... +...++.+|.
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR 55 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDR 55 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEec
Confidence 4566799999999999999999988 5678999998
No 295
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=75.90 E-value=7.8 Score=32.16 Aligned_cols=56 Identities=21% Similarity=0.393 Sum_probs=40.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC---------CCCeEEEeCCCCC
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPE---------ADNLKYIAGDMLR 203 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~---------~~ri~~~~~D~~~ 203 (301)
++...||-||||-=.....+...+++++++=+|+|++++.-++ ..++++++.|+.+
T Consensus 77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~ 141 (183)
T PF04072_consen 77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRD 141 (183)
T ss_dssp TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTS
T ss_pred CCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccc
Confidence 4556999999999999999999888999999999998875543 1235678889874
No 296
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=75.86 E-value=9.4 Score=36.66 Aligned_cols=88 Identities=19% Similarity=0.261 Sum_probs=62.8
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcC-----CCCCCeEEEeCCCCC-CCCc--chhHHH---------
Q 043533 152 SLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANL-----PEADNLKYIAGDMLR-FIPP--ANAFLF--------- 213 (301)
Q Consensus 152 ~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a-----~~~~ri~~~~~D~~~-~~p~--~D~i~~--------- 213 (301)
+++-+|||.-.+...+-+.. --.++.+|. +-+++.+ +..+-+.+...|+.. .+++ +|+++.
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~ 129 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE 129 (482)
T ss_pred eeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccccC
Confidence 89999999998888777653 124677888 4444332 224567888888877 6664 666654
Q ss_pred ------------HHHHHHHHhcccCCCCcEEEEEeee--eCCCc
Q 043533 214 ------------KILKKRREAIASNGERGKVIIIDIV--INAEE 243 (301)
Q Consensus 214 ------------~iL~~~~~aL~p~~~gg~l~i~e~~--~~~~~ 243 (301)
..+..+++.+++ ||+.+.+... .+..+
T Consensus 130 de~a~~~~~~v~~~~~eVsrvl~~---~gk~~svtl~~~vp~~r 170 (482)
T KOG2352|consen 130 DEDALLNTAHVSNMLDEVSRVLAP---GGKYISVTLVQVVPQGR 170 (482)
T ss_pred CchhhhhhHHhhHHHhhHHHHhcc---CCEEEEEEeeeeccCCC
Confidence 778999999999 8998888774 55444
No 297
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=75.85 E-value=2.7 Score=39.36 Aligned_cols=34 Identities=29% Similarity=0.213 Sum_probs=24.7
Q ss_pred CCCeEEEecCCccHHHHHH--------HHH-------CCCCeEEEeech
Q 043533 149 GLGSLVDVGGGNVSFSRII--------SEA-------FPGIKCTVLDLP 182 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l--------~~~-------~P~~~~~~~Dlp 182 (301)
+.-+|+|+|||+|.++..+ .++ -|++++..-|+|
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP 111 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLP 111 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCC
Confidence 4568999999999765433 222 357888888986
No 298
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=75.42 E-value=2.4 Score=30.53 Aligned_cols=44 Identities=23% Similarity=0.376 Sum_probs=33.2
Q ss_pred HHHHhHHhcC--CCCCHHHHHHhcCCCCCCce-----------ee--cCCCeEEcChhc
Q 043533 16 QAQLYKLIHG--RAITLSELVSALDIQPTKTT-----------VN--GQEEAYGLTAAS 59 (301)
Q Consensus 16 ~l~lF~~L~~--~p~t~~elA~~~~~~~~~l~-----------ve--~~~~~y~~t~~s 59 (301)
-+.|.+.|.. +++|+.|||+.++++...+. ++ ..++.|.+++..
T Consensus 7 ~~~Il~~l~~~~~~~t~~~ia~~l~i~~~tv~r~l~~L~~~g~l~~~~~~~~y~l~~~~ 65 (91)
T smart00346 7 GLAVLRALAEEPGGLTLAELAERLGLSKSTAHRLLNTLQELGYVEQDGQNGRYRLGPKV 65 (91)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCeeecCCCCceeecHHH
Confidence 3667888864 68999999999999988876 12 245678887743
No 299
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=74.65 E-value=1.8 Score=36.18 Aligned_cols=89 Identities=17% Similarity=0.260 Sum_probs=50.6
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------------------CCCeEEEeCCCCC--------
Q 043533 152 SLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------------------ADNLKYIAGDMLR-------- 203 (301)
Q Consensus 152 ~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------------------~~ri~~~~~D~~~-------- 203 (301)
+|.-+|.|.=.+..+++=+.-+.+++++|. ++.++...+ ..|+.+.. |+.+
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~-~~~~ai~~adv~ 80 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATT-DIEEAIKDADVV 80 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEES-EHHHHHHH-SEE
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhh-hhhhhhhccceE
Confidence 456677776554444333333679999999 665554432 34444432 2211
Q ss_pred ----CCC-----cchhHHH-HHHHHHHHhcccCCCCcEEEEEeeeeCCCccc
Q 043533 204 ----FIP-----PANAFLF-KILKKRREAIASNGERGKVIIIDIVINAEEEE 245 (301)
Q Consensus 204 ----~~p-----~~D~i~~-~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~ 245 (301)
|-| .+|+-.+ ..++.+.+.+++ +.++|++...+.....
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~----~~lvV~~STvppGtt~ 128 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRP----GDLVVIESTVPPGTTE 128 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHCS----CEEEEESSSSSTTHHH
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHhh----cceEEEccEEEEeeeh
Confidence 111 1455444 889999999998 7898988877765443
No 300
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=74.47 E-value=9.4 Score=37.80 Aligned_cols=97 Identities=15% Similarity=0.176 Sum_probs=59.1
Q ss_pred hhhhhcccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeechHHH------hcCCC---------------CCCeEEEe
Q 043533 141 SECKQIFEGLGSLVDVGGGNVSFSRIISEAFPG-IKCTVLDLPHAV------ANLPE---------------ADNLKYIA 198 (301)
Q Consensus 141 ~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~-~~~~~~Dlp~~~------~~a~~---------------~~ri~~~~ 198 (301)
..|. -+.....|||+||-.|.+....++..|- .-++++|+..+- ..... .....++-
T Consensus 37 ~ky~-fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp~~~c~t~v~dIttd~cr~~l~k~l~t~~advVL 115 (780)
T KOG1098|consen 37 KKYK-FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKPIPNCDTLVEDITTDECRSKLRKILKTWKADVVL 115 (780)
T ss_pred HHhc-cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecccCCccchhhhhhhHHHHHHHHHHHHHhCCCcEEe
Confidence 4444 2466789999999999999999999984 458999983221 11110 22234555
Q ss_pred CCCCCCCCc---chhHHH-----HHHHHHHHhcccCCCCcEEEEEeeeeCCC
Q 043533 199 GDMLRFIPP---ANAFLF-----KILKKRREAIASNGERGKVIIIDIVINAE 242 (301)
Q Consensus 199 ~D~~~~~p~---~D~i~~-----~iL~~~~~aL~p~~~gg~l~i~e~~~~~~ 242 (301)
+|....... .|.+.- ..|+=+.+-|+. ||. ++...+.+.+
T Consensus 116 hDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~---~g~-fvtkvfrs~d 163 (780)
T KOG1098|consen 116 HDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAK---GGT-FVTKVFRSED 163 (780)
T ss_pred ecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHh---cCc-cccccccCCc
Confidence 555432222 344433 666777777787 665 5555554443
No 301
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=74.07 E-value=3.3 Score=28.49 Aligned_cols=30 Identities=10% Similarity=0.251 Sum_probs=24.2
Q ss_pred HHHHhHHhcC-CC--CCHHHHHHhcCCCCCCce
Q 043533 16 QAQLYKLIHG-RA--ITLSELVSALDIQPTKTT 45 (301)
Q Consensus 16 ~l~lF~~L~~-~p--~t~~elA~~~~~~~~~l~ 45 (301)
+-.|...|.+ |+ +|+.|||+++|++...+.
T Consensus 8 ~~~IL~~L~~~g~~~~ta~eLa~~lgl~~~~v~ 40 (68)
T smart00550 8 EEKILEFLENSGDETSTALQLAKNLGLPKKEVN 40 (68)
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHH
Confidence 4456777764 55 999999999999998776
No 302
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=73.39 E-value=4.7 Score=28.53 Aligned_cols=35 Identities=23% Similarity=0.354 Sum_probs=22.6
Q ss_pred ChHHHHHHHHHHhHHhcC-CCCCHHHHHHhcCCCCCCce
Q 043533 8 GAKELFQGQAQLYKLIHG-RAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 8 ~~~~~~~~~l~lF~~L~~-~p~t~~elA~~~~~~~~~l~ 45 (301)
....|+.. |+..|+. .|+|.++||.++|.+.+.+.
T Consensus 21 ~~~~L~r~---LLr~LA~G~PVt~~~LA~a~g~~~e~v~ 56 (77)
T PF12324_consen 21 GFAWLLRP---LLRLLAKGQPVTVEQLAAALGWPVEEVR 56 (77)
T ss_dssp THHHHHHH---HHHHHTTTS-B-HHHHHHHHT--HHHHH
T ss_pred ccHHHHHH---HHHHHHcCCCcCHHHHHHHHCCCHHHHH
Confidence 33444444 6778876 59999999999998877665
No 303
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=73.10 E-value=18 Score=32.45 Aligned_cols=80 Identities=14% Similarity=0.109 Sum_probs=50.4
Q ss_pred CCeEEEec-CCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCCc-chhHHH-----HHHHHHHH
Q 043533 150 LGSLVDVG-GGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLRFIPP-ANAFLF-----KILKKRRE 221 (301)
Q Consensus 150 ~~~vlDvG-gG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~~~p~-~D~i~~-----~iL~~~~~ 221 (301)
..+++=+| ||.|.++..+++...--.++++|. ++-++.+... .++ |..+..+. +|+|+= ..+..+.+
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~---~~i--~~~~~~~~g~Dvvid~~G~~~~~~~~~~ 219 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY---EVL--DPEKDPRRDYRAIYDASGDPSLIDTLVR 219 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc---ccc--ChhhccCCCCCEEEECCCCHHHHHHHHH
Confidence 45677777 456778888888874334667776 5555554421 111 21111122 566554 67899999
Q ss_pred hcccCCCCcEEEEEee
Q 043533 222 AIASNGERGKVIIIDI 237 (301)
Q Consensus 222 aL~p~~~gg~l~i~e~ 237 (301)
.|++ +|+++++-.
T Consensus 220 ~l~~---~G~iv~~G~ 232 (308)
T TIGR01202 220 RLAK---GGEIVLAGF 232 (308)
T ss_pred hhhc---CcEEEEEee
Confidence 9999 899998765
No 304
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=72.73 E-value=6.4 Score=34.85 Aligned_cols=77 Identities=10% Similarity=0.149 Sum_probs=59.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCCC--c-chhHHH-------HHH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLRFIP--P-ANAFLF-------KIL 216 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~ri~~~~~D~~~~~p--~-~D~i~~-------~iL 216 (301)
+...-.-+|+|...|.++-.|.++ ++.++.+|-..|.+..-..++|+....|-|+-.| . .|..++ ++-
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCDmVEkP~rv~ 286 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCDMVEKPARVA 286 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc--ceEEEEeccchhhhhhhcccceeeeeccCcccccCCCCCceEEeehhcCcHHHH
Confidence 455678999999999999999998 6899999997777777768889999889887444 3 454444 555
Q ss_pred HHHHHhccc
Q 043533 217 KKRREAIAS 225 (301)
Q Consensus 217 ~~~~~aL~p 225 (301)
.-+...|..
T Consensus 287 ~li~~Wl~n 295 (358)
T COG2933 287 ALIAKWLVN 295 (358)
T ss_pred HHHHHHHHc
Confidence 555556655
No 305
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=72.63 E-value=22 Score=27.66 Aligned_cols=75 Identities=9% Similarity=0.018 Sum_probs=46.0
Q ss_pred CCeEEEeCCCCCCCCcchhHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHH
Q 043533 192 DNLKYIAGDMLRFIPPANAFLFKILKKRREAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTES 271 (301)
Q Consensus 192 ~ri~~~~~D~~~~~p~~D~i~~~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~ 271 (301)
.++..+-.|.|.|-...++--..+|+++++.++| ||.+.-... ..
T Consensus 49 ~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~---~~~l~Tys~--------------------------------a~ 93 (124)
T PF05430_consen 49 ARFDAWYLDGFSPAKNPELWSEELFKKLARLSKP---GGTLATYSS--------------------------------AG 93 (124)
T ss_dssp T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEE---EEEEEES----------------------------------BH
T ss_pred ccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCC---CcEEEEeec--------------------------------hH
Confidence 3555555666665444454334889999999999 664332110 11
Q ss_pred HHHHHHHhCCCceeEEEecCCceeEEEEeC
Q 043533 272 EWAKLFFDAVFSHYKITPIFGMKSLIEVYP 301 (301)
Q Consensus 272 e~~~ll~~aGf~~~~~~~~~~~~~~i~a~~ 301 (301)
..++-|.++||++.+....++-...+.|.+
T Consensus 94 ~Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~~ 123 (124)
T PF05430_consen 94 AVRRALQQAGFEVEKVPGFGRKREMLRAVK 123 (124)
T ss_dssp HHHHHHHHCTEEEEEEE-STTSSEEEEEEC
T ss_pred HHHHHHHHcCCEEEEcCCCCCcchheEEEc
Confidence 247889999999988877776667766653
No 306
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=72.56 E-value=9.4 Score=37.11 Aligned_cols=68 Identities=13% Similarity=0.088 Sum_probs=41.3
Q ss_pred HHHHHHHHhhcc-----cc-cchHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCC----CCeEEEeec-hHHHhc
Q 043533 119 INQRFNEAMASD-----SE-IMTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFP----GIKCTVLDL-PHAVAN 187 (301)
Q Consensus 119 ~~~~f~~am~~~-----~~-~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P----~~~~~~~Dl-p~~~~~ 187 (301)
..+.|..+.... +. .++.-++ +.+. .....+|.|-.||+|.+.....+..- ++.+.+++. +.+...
T Consensus 153 ll~~fa~~~~k~~GEfyTP~~v~~liv-~~l~--~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l 229 (489)
T COG0286 153 LLRKFAEAEGKEAGEFYTPREVSELIV-ELLD--PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRL 229 (489)
T ss_pred HHHHHHHhcCCCCCccCChHHHHHHHH-HHcC--CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHH
Confidence 344566665542 11 1233344 4444 34556999999999998877665432 378999997 555444
Q ss_pred CC
Q 043533 188 LP 189 (301)
Q Consensus 188 a~ 189 (301)
++
T Consensus 230 ~~ 231 (489)
T COG0286 230 AK 231 (489)
T ss_pred HH
Confidence 43
No 307
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=72.38 E-value=1.3 Score=39.81 Aligned_cols=91 Identities=18% Similarity=0.141 Sum_probs=64.2
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEeCCCCCCCCc--chhHHH------
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------ADNLKYIAGDMLRFIPP--ANAFLF------ 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~~~p~--~D~i~~------ 213 (301)
...|+|+=.|.|.+....+=..-..++..+|. |+.++..+. .+|+..+.||-..+-|. +|-|.+
T Consensus 195 ~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLGLlPSs 274 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLGLLPSS 274 (351)
T ss_pred cchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeecccccc
Confidence 48999999999999994443334567999999 888776653 56777778887665554 787766
Q ss_pred -HHHHHHHHhcccCCCCc-EEEEEeeeeCCC
Q 043533 214 -KILKKRREAIASNGERG-KVIIIDIVINAE 242 (301)
Q Consensus 214 -~iL~~~~~aL~p~~~gg-~l~i~e~~~~~~ 242 (301)
+----+-++|+|+ || .+-|+|.+-.++
T Consensus 275 e~~W~~A~k~Lk~e--ggsilHIHenV~~s~ 303 (351)
T KOG1227|consen 275 EQGWPTAIKALKPE--GGSILHIHENVKDSD 303 (351)
T ss_pred ccchHHHHHHhhhc--CCcEEEEeccccccc
Confidence 3334456788883 55 666777655544
No 308
>COG2973 TrpR Trp operon repressor [Transcription]
Probab=72.30 E-value=6.4 Score=29.06 Aligned_cols=38 Identities=8% Similarity=0.091 Sum_probs=31.5
Q ss_pred CChHHHHH--HHHHHhHHhcCCCCCHHHHHHhcCCCCCCc
Q 043533 7 QGAKELFQ--GQAQLYKLIHGRAITLSELVSALDIQPTKT 44 (301)
Q Consensus 7 ~~~~~~~~--~~l~lF~~L~~~p~t~~elA~~~~~~~~~l 44 (301)
+++.|..+ .|+.|...|.+|.+|-.||++++|++-..+
T Consensus 38 LTpdEReal~~Rv~Iv~eLL~ge~sQREi~~~LgvsiAtI 77 (103)
T COG2973 38 LTPDEREALGTRVRIVEELLRGELSQREIAQKLGVSIATI 77 (103)
T ss_pred cCHhHHHHHHHHHHHHHHHHhccccHHHHHHHhCcchhhh
Confidence 36777765 599999999999999999999999875443
No 309
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=72.09 E-value=34 Score=31.94 Aligned_cols=54 Identities=15% Similarity=0.072 Sum_probs=40.8
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCCC
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE--------ADNLKYIAGDML 202 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~--------~~ri~~~~~D~~ 202 (301)
+..+.+|++|+.+.....+++.|+-++..+++. .+.+..+.. .-.+.+..||++
T Consensus 180 d~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~ 242 (364)
T KOG1269|consen 180 DGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDAL 242 (364)
T ss_pred CcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccc
Confidence 467999999999999999999999998888887 444444432 234666677765
No 310
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=71.65 E-value=19 Score=33.43 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=33.9
Q ss_pred ccCCCeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCC
Q 043533 147 FEGLGSLVDVGGGN-VSFSRIISEAFPGIKCTVLDL-PHAVANLPE 190 (301)
Q Consensus 147 ~~~~~~vlDvGgG~-G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~ 190 (301)
.....+|+.+|+|. |..+..++++..-.+++++|. ++..+.+++
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~ 227 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARS 227 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 45568999999988 889999999985446888887 666665553
No 311
>PTZ00357 methyltransferase; Provisional
Probab=71.28 E-value=24 Score=35.74 Aligned_cols=74 Identities=14% Similarity=0.094 Sum_probs=51.1
Q ss_pred CeEEEecCCccHHHHHHHHHCC----CCeEEEeec-hHHH----hcC-C-----C-----CCCeEEEeCCCCC-CCC---
Q 043533 151 GSLVDVGGGNVSFSRIISEAFP----GIKCTVLDL-PHAV----ANL-P-----E-----ADNLKYIAGDMLR-FIP--- 206 (301)
Q Consensus 151 ~~vlDvGgG~G~~~~~l~~~~P----~~~~~~~Dl-p~~~----~~a-~-----~-----~~ri~~~~~D~~~-~~p--- 206 (301)
..|+-||+|.|-+....+++.- .+++.+++- |..+ .+- . . +++|+++..|+.+ ..|
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 3589999999998877766533 467788887 3422 111 1 1 4579999999986 322
Q ss_pred ----------cchhHHH-------------HHHHHHHHhcc
Q 043533 207 ----------PANAFLF-------------KILKKRREAIA 224 (301)
Q Consensus 207 ----------~~D~i~~-------------~iL~~~~~aL~ 224 (301)
.+|+++. +.|.-+.+.|+
T Consensus 782 ~s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLK 822 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLE 822 (1072)
T ss_pred ccccccccccccceehHhhhcccccccCCHHHHHHHHHhhh
Confidence 3899998 77777777665
No 312
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=70.67 E-value=8.1 Score=32.85 Aligned_cols=73 Identities=15% Similarity=0.241 Sum_probs=46.6
Q ss_pred CCeEEEecCCccHHHH--HHHHHCCCCeEEEeec---hHHHhcCCCCCCeEEEeCCCCC-CCCcchhHHH-----HHHHH
Q 043533 150 LGSLVDVGGGNVSFSR--IISEAFPGIKCTVLDL---PHAVANLPEADNLKYIAGDMLR-FIPPANAFLF-----KILKK 218 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~--~l~~~~P~~~~~~~Dl---p~~~~~a~~~~ri~~~~~D~~~-~~p~~D~i~~-----~iL~~ 218 (301)
.++||=||||.=.... .|++. +.++++++. ++..+.+. ..+++++.+++.. .+..+|+|++ .+=+.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~--ga~VtVvsp~~~~~l~~l~~-~~~i~~~~~~~~~~dl~~~~lVi~at~d~~ln~~ 85 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKA--GAQLRVIAEELESELTLLAE-QGGITWLARCFDADILEGAFLVIAATDDEELNRR 85 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC--CCEEEEEcCCCCHHHHHHHH-cCCEEEEeCCCCHHHhCCcEEEEECCCCHHHHHH
Confidence 4789999998755443 33443 567888875 33333333 4589999998865 4555787776 45566
Q ss_pred HHHhccc
Q 043533 219 RREAIAS 225 (301)
Q Consensus 219 ~~~aL~p 225 (301)
++...+.
T Consensus 86 i~~~a~~ 92 (205)
T TIGR01470 86 VAHAARA 92 (205)
T ss_pred HHHHHHH
Confidence 6666655
No 313
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=70.32 E-value=2.4 Score=40.61 Aligned_cols=92 Identities=18% Similarity=0.304 Sum_probs=63.4
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC----C---CCc---chh
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR----F---IPP---ANA 210 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~----~---~p~---~D~ 210 (301)
.....++-||-|.|.+..-+....|..+++++.+ |++++.+++ ..|..++-.|-.. . .++ +|+
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 3456778888888999999999999999999999 999999985 2333333333221 0 111 555
Q ss_pred HHH--------------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCc
Q 043533 211 FLF--------------------KILKKRREAIASNGERGKVIIIDIVINAEE 243 (301)
Q Consensus 211 i~~--------------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~ 243 (301)
++. .+|..+...|+| .|-+ ++..+..+..
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p---~g~f-~inlv~r~~~ 422 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPP---RGMF-IINLVTRNSS 422 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCc---cceE-EEEEecCCcc
Confidence 443 899999999999 5655 5555444443
No 314
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=69.95 E-value=3.2 Score=31.84 Aligned_cols=77 Identities=12% Similarity=0.149 Sum_probs=51.3
Q ss_pred CccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeC-C--CCC----CCCc--chhHHH-----HHHHHHHHhc
Q 043533 159 GNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAG-D--MLR----FIPP--ANAFLF-----KILKKRREAI 223 (301)
Q Consensus 159 G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~-D--~~~----~~p~--~D~i~~-----~iL~~~~~aL 223 (301)
|.|.++..+++... .+++++|. +.-.+.+++..--.++.. + +-+ -.+. +|+++- ..++...+.+
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l 79 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAIKLL 79 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHHHHE
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCcHHHHHHHHHHh
Confidence 46889999999987 99999998 555555554211111111 1 111 0222 565553 9999999999
Q ss_pred ccCCCCcEEEEEeeee
Q 043533 224 ASNGERGKVIIIDIVI 239 (301)
Q Consensus 224 ~p~~~gg~l~i~e~~~ 239 (301)
++ +|+++++-...
T Consensus 80 ~~---~G~~v~vg~~~ 92 (130)
T PF00107_consen 80 RP---GGRIVVVGVYG 92 (130)
T ss_dssp EE---EEEEEEESSTS
T ss_pred cc---CCEEEEEEccC
Confidence 99 89999988755
No 315
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=69.90 E-value=6.8 Score=34.92 Aligned_cols=59 Identities=20% Similarity=0.246 Sum_probs=39.4
Q ss_pred eEEEecCCccHHHHHHHHHCCCCe-EEEeec-hHHHhcCCCC-CCeEEEeCCCCC-C----CCcchhHHH
Q 043533 152 SLVDVGGGNVSFSRIISEAFPGIK-CTVLDL-PHAVANLPEA-DNLKYIAGDMLR-F----IPPANAFLF 213 (301)
Q Consensus 152 ~vlDvGgG~G~~~~~l~~~~P~~~-~~~~Dl-p~~~~~a~~~-~ri~~~~~D~~~-~----~p~~D~i~~ 213 (301)
+++|+-||.|.+...+.+.. .+ +..+|. +.+++..+.. +. .++.+|+.+ . .+.+|+++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~-~~~~~Di~~~~~~~~~~~~D~l~~ 68 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPN-KLIEGDITKIDEKDFIPDIDLLTG 68 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCC-CCccCccccCchhhcCCCCCEEEe
Confidence 68999999999999998875 44 667898 6666554431 22 245566655 1 223777766
No 316
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=69.77 E-value=1.9 Score=30.51 Aligned_cols=44 Identities=11% Similarity=0.254 Sum_probs=30.7
Q ss_pred HHhHHhcCCCCCHHHHHHhcCCCCCCce-----------eecCCCeEEcChhcch
Q 043533 18 QLYKLIHGRAITLSELVSALDIQPTKTT-----------VNGQEEAYGLTAASTL 61 (301)
Q Consensus 18 ~lF~~L~~~p~t~~elA~~~~~~~~~l~-----------ve~~~~~y~~t~~s~~ 61 (301)
++-..+.+++.+..+|+..++++...+. |+..++.|.+|+.|..
T Consensus 10 ~IL~~l~~~~~~~t~i~~~~~L~~~~~~~yL~~L~~~gLI~~~~~~Y~lTekG~~ 64 (77)
T PF14947_consen 10 DILKILSKGGAKKTEIMYKANLNYSTLKKYLKELEEKGLIKKKDGKYRLTEKGKE 64 (77)
T ss_dssp HHHHHH-TT-B-HHHHHTTST--HHHHHHHHHHHHHTTSEEEETTEEEE-HHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHhCcCHHHHHHHHHHHHHCcCeeCCCCEEEECccHHH
Confidence 4455555799999999999999988877 2568899999999973
No 317
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=69.67 E-value=10 Score=31.05 Aligned_cols=78 Identities=21% Similarity=0.377 Sum_probs=48.4
Q ss_pred ecCCccHHHHHHHHHCC---CCeEEEeec-hHHHhcCCC---------CCCeEEEeC-CCCC--C-C--C-c-chhHHH-
Q 043533 156 VGGGNVSFSRIISEAFP---GIKCTVLDL-PHAVANLPE---------ADNLKYIAG-DMLR--F-I--P-P-ANAFLF- 213 (301)
Q Consensus 156 vGgG~G~~~~~l~~~~P---~~~~~~~Dl-p~~~~~a~~---------~~ri~~~~~-D~~~--~-~--p-~-~D~i~~- 213 (301)
||=|.=.++..|+++++ ++-++.+|. .++.+.-.. ..+++++.+ |+.+ . . . . ||.|+.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 67777778888999877 445677776 333333321 233433332 5544 1 1 1 1 666554
Q ss_pred -----------------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 -----------------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 -----------------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
.+|+++.+.|++ +|.|.|.-
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~---~G~IhVTl 125 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKP---DGEIHVTL 125 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEe
Confidence 888999999999 78877754
No 318
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=68.40 E-value=11 Score=35.06 Aligned_cols=85 Identities=13% Similarity=0.094 Sum_probs=62.8
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEeCCCCC---CCCc-chhHHH-----
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE------ADNLKYIAGDMLR---FIPP-ANAFLF----- 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~------~~ri~~~~~D~~~---~~p~-~D~i~~----- 213 (301)
..+|+|-=+|+|.-+++.+..-+..+++.-|+ |..++.+++ ......+..|... .... ||+|=+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiDPFGS 132 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDIDPFGS 132 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEecCCCCC
Confidence 68999999999999999999999889999999 888887775 2233444455433 1122 565555
Q ss_pred --HHHHHHHHhcccCCCCcEEEEEee
Q 043533 214 --KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 --~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
-.+..+.++++. ||.|.+.-+
T Consensus 133 PaPFlDaA~~s~~~---~G~l~vTAT 155 (380)
T COG1867 133 PAPFLDAALRSVRR---GGLLCVTAT 155 (380)
T ss_pred CchHHHHHHHHhhc---CCEEEEEec
Confidence 778888888888 787776543
No 319
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=67.75 E-value=3.1 Score=26.80 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=22.2
Q ss_pred HHHHhHHhcC--CCCCHHHHHHhcCCCCCCce
Q 043533 16 QAQLYKLIHG--RAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 16 ~l~lF~~L~~--~p~t~~elA~~~~~~~~~l~ 45 (301)
-+.|.+.|.+ +++|+.|||+++|++...+.
T Consensus 5 al~iL~~l~~~~~~~t~~eia~~~gl~~stv~ 36 (52)
T PF09339_consen 5 ALRILEALAESGGPLTLSEIARALGLPKSTVH 36 (52)
T ss_dssp HHHHHHCHHCTBSCEEHHHHHHHHTS-HHHHH
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHCcCHHHHH
Confidence 3567888864 56899999999999865443
No 320
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=67.10 E-value=5.5 Score=34.91 Aligned_cols=32 Identities=16% Similarity=0.382 Sum_probs=24.4
Q ss_pred CCeEEEecCCccHHHHHHHHHCC--------CCeEEEeec
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFP--------GIKCTVLDL 181 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P--------~~~~~~~Dl 181 (301)
.-+|+++|+|+|.++..+++... .+++++++.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~ 58 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEI 58 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-T
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcC
Confidence 36999999999999999988533 358999987
No 321
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=67.07 E-value=9.9 Score=32.86 Aligned_cols=76 Identities=18% Similarity=0.185 Sum_probs=47.5
Q ss_pred CCCeEEEecCCccHHHHH--HHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCCcchhHHH-----HHHHHH
Q 043533 149 GLGSLVDVGGGNVSFSRI--ISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLR-FIPPANAFLF-----KILKKR 219 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~--l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~-~~p~~D~i~~-----~iL~~~ 219 (301)
+..+||=||||.-..-.. |++...+++++.-++ +++.+.+. .++|+++..++.. .+..+++|++ .+=+++
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~-~~~i~~~~r~~~~~dl~g~~LViaATdD~~vN~~I 102 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKK-YGNLKLIKGNYDKEFIKDKHLIVIATDDEKLNNKI 102 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHh-CCCEEEEeCCCChHHhCCCcEEEECCCCHHHHHHH
Confidence 357899999998886543 444433434444455 55554433 6789999987754 4555777666 555555
Q ss_pred HHhccc
Q 043533 220 REAIAS 225 (301)
Q Consensus 220 ~~aL~p 225 (301)
++..+.
T Consensus 103 ~~~a~~ 108 (223)
T PRK05562 103 RKHCDR 108 (223)
T ss_pred HHHHHH
Confidence 555554
No 322
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=66.90 E-value=8 Score=33.97 Aligned_cols=85 Identities=21% Similarity=0.403 Sum_probs=53.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCC----CeEEEeec-hHHHhcC-C----CCCC--eEEEeCCCCCC---CCc--ch
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPG----IKCTVLDL-PHAVANL-P----EADN--LKYIAGDMLRF---IPP--AN 209 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~----~~~~~~Dl-p~~~~~a-~----~~~r--i~~~~~D~~~~---~p~--~D 209 (301)
..+..+++|+|.|+-.-+..|+..+-+ ++.+-+|. ..++..- + +.+. +.-+.+|+..+ +|. --
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~R 155 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRR 155 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeE
Confidence 345789999999999888888777655 78999998 3333311 1 1233 34444565432 222 11
Q ss_pred hHH-H-------------HHHHHHHHhcccCCCCcEEEE
Q 043533 210 AFL-F-------------KILKKRREAIASNGERGKVII 234 (301)
Q Consensus 210 ~i~-~-------------~iL~~~~~aL~p~~~gg~l~i 234 (301)
+++ + .+|.+++.+|.| |-.+++
T Consensus 156 l~~flGStlGN~tp~e~~~Fl~~l~~a~~p---Gd~~Ll 191 (321)
T COG4301 156 LFVFLGSTLGNLTPGECAVFLTQLRGALRP---GDYFLL 191 (321)
T ss_pred EEEEecccccCCChHHHHHHHHHHHhcCCC---cceEEE
Confidence 111 1 788999999999 666665
No 323
>COG1414 IclR Transcriptional regulator [Transcription]
Probab=66.78 E-value=4.3 Score=35.57 Aligned_cols=44 Identities=18% Similarity=0.329 Sum_probs=33.6
Q ss_pred HHHHhHHhcCCC--CCHHHHHHhcCCCCCCce-----------ee--cCCCeEEcChhc
Q 043533 16 QAQLYKLIHGRA--ITLSELVSALDIQPTKTT-----------VN--GQEEAYGLTAAS 59 (301)
Q Consensus 16 ~l~lF~~L~~~p--~t~~elA~~~~~~~~~l~-----------ve--~~~~~y~~t~~s 59 (301)
-+.|.++|..+| +++.|||+++|++...+. ++ .++++|.+++..
T Consensus 6 al~iL~~l~~~~~~l~l~ela~~~glpksT~~RlL~tL~~~G~v~~d~~~g~Y~Lg~~~ 64 (246)
T COG1414 6 ALAILDLLAEGPGGLSLAELAERLGLPKSTVHRLLQTLVELGYVEQDPEDGRYRLGPRL 64 (246)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEcCCCCcEeehHHH
Confidence 466788887655 459999999999998877 23 345789999864
No 324
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=66.46 E-value=13 Score=30.05 Aligned_cols=61 Identities=18% Similarity=0.298 Sum_probs=37.1
Q ss_pred CCeEEEecCCccHHH--HHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCC-CCCcchhHHH
Q 043533 150 LGSLVDVGGGNVSFS--RIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLR-FIPPANAFLF 213 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~--~~l~~~~P~~~~~~~Dlp~~~~~a~~~~ri~~~~~D~~~-~~p~~D~i~~ 213 (301)
.++||=||||.=..- ..|++. +.++++++ |+..+...+.+++++....+.+ .+..+|+++.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~--ga~V~VIs-p~~~~~l~~l~~i~~~~~~~~~~dl~~a~lVia 76 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDT--GAFVTVVS-PEICKEMKELPYITWKQKTFSNDDIKDAHLIYA 76 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCEEEEEc-CccCHHHHhccCcEEEecccChhcCCCceEEEE
Confidence 588999999865543 334444 45677775 4433333223467777666654 4555888777
No 325
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=66.46 E-value=5.5 Score=24.99 Aligned_cols=31 Identities=23% Similarity=0.315 Sum_probs=22.9
Q ss_pred HHHHHhHHhcC-CCCCHHHHHHhcCCCCCCce
Q 043533 15 GQAQLYKLIHG-RAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 15 ~~l~lF~~L~~-~p~t~~elA~~~~~~~~~l~ 45 (301)
.+..|+..|.+ +++|..|||+.+|++...+.
T Consensus 4 ~~~~Il~~l~~~~~~t~~ela~~~~is~~tv~ 35 (48)
T PF13412_consen 4 TQRKILNYLRENPRITQKELAEKLGISRSTVN 35 (48)
T ss_dssp HHHHHHHHHHHCTTS-HHHHHHHHTS-HHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHH
Confidence 46778888875 67999999999999865543
No 326
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=66.14 E-value=22 Score=33.03 Aligned_cols=58 Identities=19% Similarity=0.339 Sum_probs=40.8
Q ss_pred CchHHHHHHHHhhcccccchHHHHHhhhhh-cccCCCeEEEecCCccHHHHHHHHH----CC----CCeEEEeec
Q 043533 116 NPAINQRFNEAMASDSEIMTSFVVKSECKQ-IFEGLGSLVDVGGGNVSFSRIISEA----FP----GIKCTVLDL 181 (301)
Q Consensus 116 ~~~~~~~f~~am~~~~~~~~~~~~~~~~~~-~~~~~~~vlDvGgG~G~~~~~l~~~----~P----~~~~~~~Dl 181 (301)
.|+..+.|.+..+. +++ ..+.. +.+..-.+|++|.|+|.++..+++. +| .+++.+++.
T Consensus 51 Apels~lFGella~-------~~~-~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~ 117 (370)
T COG1565 51 APELSQLFGELLAE-------QFL-QLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEP 117 (370)
T ss_pred chhHHHHHHHHHHH-------HHH-HHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEec
Confidence 57777888877643 344 44432 1345568999999999998887764 56 468888887
No 327
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=65.68 E-value=6.6 Score=25.36 Aligned_cols=29 Identities=28% Similarity=0.392 Sum_probs=22.2
Q ss_pred HHHhHHh-c-CCCCCHHHHHHhcCCCCCCce
Q 043533 17 AQLYKLI-H-GRAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 17 l~lF~~L-~-~~p~t~~elA~~~~~~~~~l~ 45 (301)
..|...| . ++++|+++||+.++++.+.+.
T Consensus 3 ~~il~~L~~~~~~it~~eLa~~l~vS~rTi~ 33 (55)
T PF08279_consen 3 KQILKLLLESKEPITAKELAEELGVSRRTIR 33 (55)
T ss_dssp HHHHHHHHHTTTSBEHHHHHHHCTS-HHHHH
T ss_pred HHHHHHHHHcCCCcCHHHHHHHhCCCHHHHH
Confidence 3566677 3 467999999999999988776
No 328
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=64.76 E-value=8.7 Score=34.66 Aligned_cols=76 Identities=12% Similarity=0.034 Sum_probs=41.1
Q ss_pred CCeEEEecCCc-c-HHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCCcchhHHH--------HHHHH
Q 043533 150 LGSLVDVGGGN-V-SFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLRFIPPANAFLF--------KILKK 218 (301)
Q Consensus 150 ~~~vlDvGgG~-G-~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~~~p~~D~i~~--------~iL~~ 218 (301)
..+|.=||+|. | .++..+.+.....+++++|. ++..+.+.+..-......+..+....+|+|++ .++++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~~~~v~~~ 85 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGASGAVAAE 85 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHHHHHHHHH
Confidence 45788888775 2 34444444433347899998 55555554311111111122112334777776 56677
Q ss_pred HHHhccc
Q 043533 219 RREAIAS 225 (301)
Q Consensus 219 ~~~aL~p 225 (301)
+...+++
T Consensus 86 l~~~l~~ 92 (307)
T PRK07502 86 IAPHLKP 92 (307)
T ss_pred HHhhCCC
Confidence 7777777
No 329
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=64.19 E-value=38 Score=30.89 Aligned_cols=85 Identities=13% Similarity=0.210 Sum_probs=51.8
Q ss_pred cCCCeEEEecCC-ccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCCcchhHHH--------HHH
Q 043533 148 EGLGSLVDVGGG-NVSFSRIISEA-FPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLRFIPPANAFLF--------KIL 216 (301)
Q Consensus 148 ~~~~~vlDvGgG-~G~~~~~l~~~-~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~~~p~~D~i~~--------~iL 216 (301)
....+||-+|+| .|.++..++++ ....+++++|. ++-++.++..+.. ....++.+.. .+|+|+= ..+
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~-~~~~~~~~~~-g~d~viD~~G~~~~~~~~ 239 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADET-YLIDDIPEDL-AVDHAFECVGGRGSQSAI 239 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCce-eehhhhhhcc-CCcEEEECCCCCccHHHH
Confidence 446788888854 45556677775 56678999997 5555555432211 1111111111 1454442 468
Q ss_pred HHHHHhcccCCCCcEEEEEee
Q 043533 217 KKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 217 ~~~~~aL~p~~~gg~l~i~e~ 237 (301)
.+..+.|++ ||+++++-.
T Consensus 240 ~~~~~~l~~---~G~iv~~G~ 257 (341)
T cd08237 240 NQIIDYIRP---QGTIGLMGV 257 (341)
T ss_pred HHHHHhCcC---CcEEEEEee
Confidence 889999999 899998764
No 330
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=62.91 E-value=5.3 Score=37.42 Aligned_cols=88 Identities=16% Similarity=0.140 Sum_probs=63.5
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-------CC-CeEEEeCCCCCC---CCc-chhHH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPG-IKCTVLDL-PHAVANLPE-------AD-NLKYIAGDMLRF---IPP-ANAFL 212 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~-~~~~~~Dl-p~~~~~a~~-------~~-ri~~~~~D~~~~---~p~-~D~i~ 212 (301)
..+.-++||.=+|+|.-+++.++..++ .++++-|+ |+.++.++. .+ ++++...|+..- ... ||+|=
T Consensus 47 ~~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~ID 126 (377)
T PF02005_consen 47 RKGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVID 126 (377)
T ss_dssp H-S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEE
T ss_pred hcCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEE
Confidence 344569999999999999999999655 56888999 777776654 33 788888887541 233 77766
Q ss_pred H-------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 213 F-------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 213 ~-------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
+ -.|..+.++++. ||.|.|.-+
T Consensus 127 lDPfGSp~pfldsA~~~v~~---gGll~vTaT 155 (377)
T PF02005_consen 127 LDPFGSPAPFLDSALQAVKD---GGLLCVTAT 155 (377)
T ss_dssp E--SS--HHHHHHHHHHEEE---EEEEEEEE-
T ss_pred eCCCCCccHhHHHHHHHhhc---CCEEEEecc
Confidence 5 899999999999 787777654
No 331
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=62.63 E-value=33 Score=31.46 Aligned_cols=91 Identities=11% Similarity=0.141 Sum_probs=59.6
Q ss_pred ccCCCeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCC--------------CCCc--
Q 043533 147 FEGLGSLVDVGGGN-VSFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIAGDMLR--------------FIPP-- 207 (301)
Q Consensus 147 ~~~~~~vlDvGgG~-G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~~D~~~--------------~~p~-- 207 (301)
+....+||-+|+|. |.++...++.+-..++++.|+ +.-++.|++ +-+.......... ..|+
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 56678999999986 666677778888889999999 888888886 2221111111100 0122
Q ss_pred chhHHH-HHHHHHHHhcccCCCCcEEEEEeeeeC
Q 043533 208 ANAFLF-KILKKRREAIASNGERGKVIIIDIVIN 240 (301)
Q Consensus 208 ~D~i~~-~iL~~~~~aL~p~~~gg~l~i~e~~~~ 240 (301)
+|+--+ ..++.+..++++ ||.+++...-.+
T Consensus 247 ~dCsG~~~~~~aai~a~r~---gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 247 FDCSGAEVTIRAAIKATRS---GGTVVLVGMGAE 277 (354)
T ss_pred EEccCchHHHHHHHHHhcc---CCEEEEeccCCC
Confidence 232222 777888899999 899888775433
No 332
>TIGR00122 birA_repr_reg BirA biotin operon repressor domain. This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.
Probab=62.26 E-value=4.2 Score=27.80 Aligned_cols=29 Identities=21% Similarity=0.253 Sum_probs=25.9
Q ss_pred HHHhHHhcCCCCCHHHHHHhcCCCCCCce
Q 043533 17 AQLYKLIHGRAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 17 l~lF~~L~~~p~t~~elA~~~~~~~~~l~ 45 (301)
+.+...|.+++.|.++||+.++++...++
T Consensus 3 ~~il~~L~~~~~~~~eLa~~l~vS~~tv~ 31 (69)
T TIGR00122 3 LRLLALLADNPFSGEKLGEALGMSRTAVN 31 (69)
T ss_pred HHHHHHHHcCCcCHHHHHHHHCCCHHHHH
Confidence 56788899999999999999999998877
No 333
>PRK09273 hypothetical protein; Provisional
Probab=62.25 E-value=6.9 Score=33.35 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=37.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEe
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIA 198 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~ri~~~~ 198 (301)
++.....=++||||.=....+.++|++++-.+--|.....+++.++.+.+.
T Consensus 61 ~g~~d~GIliCGTGiG~siAANK~pGIraalc~d~~sA~lar~hNnaNVL~ 111 (211)
T PRK09273 61 SKAVDFVVTGCGTGQGAMLALNSFPGVVCGYCIDPTDAYLFAQINNGNALS 111 (211)
T ss_pred cCCCCEEEEEcCcHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 344556667999999999999999999976666677666666644444333
No 334
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=61.14 E-value=8.7 Score=23.92 Aligned_cols=24 Identities=8% Similarity=0.343 Sum_probs=16.6
Q ss_pred HHhHHhcCCCCCHHHHHHhcCCCCC
Q 043533 18 QLYKLIHGRAITLSELVSALDIQPT 42 (301)
Q Consensus 18 ~lF~~L~~~p~t~~elA~~~~~~~~ 42 (301)
.+.+.+.+| .|+.+||+.+|++..
T Consensus 13 ~i~~l~~~G-~si~~IA~~~gvsr~ 36 (45)
T PF02796_consen 13 EIKELYAEG-MSIAEIAKQFGVSRS 36 (45)
T ss_dssp HHHHHHHTT---HHHHHHHTTS-HH
T ss_pred HHHHHHHCC-CCHHHHHHHHCcCHH
Confidence 356667777 999999999998753
No 335
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=60.41 E-value=16 Score=30.70 Aligned_cols=48 Identities=6% Similarity=-0.047 Sum_probs=33.7
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcC
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANL 188 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a 188 (301)
...++ ..+. .....|||-=||+|.++.+..+.+ -+++++|+ ++.++.|
T Consensus 181 ~~~lI-~~~t---~~gdiVlDpF~GSGTT~~aa~~l~--R~~ig~E~~~~y~~~a 229 (231)
T PF01555_consen 181 IERLI-KAST---NPGDIVLDPFAGSGTTAVAAEELG--RRYIGIEIDEEYCEIA 229 (231)
T ss_dssp HHHHH-HHHS----TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHH
T ss_pred HHHHH-Hhhh---ccceeeehhhhccChHHHHHHHcC--CeEEEEeCCHHHHHHh
Confidence 44555 5443 446899999999999999988884 56999999 6666544
No 336
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=60.13 E-value=10 Score=29.62 Aligned_cols=38 Identities=16% Similarity=0.344 Sum_probs=28.0
Q ss_pred ChHHHHHH-------HHHHhHHhc--CCCCCHHHHHHhcCCCCCCce
Q 043533 8 GAKELFQG-------QAQLYKLIH--GRAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 8 ~~~~~~~~-------~l~lF~~L~--~~p~t~~elA~~~~~~~~~l~ 45 (301)
.-.++|.+ ..++|.+|. ++|.|+++||+.++.+...+.
T Consensus 14 ~~~dvl~c~~GLs~~Dv~v~~~LL~~~~~~tvdelae~lnr~rStv~ 60 (126)
T COG3355 14 RCEDVLKCVYGLSELDVEVYKALLEENGPLTVDELAEILNRSRSTVY 60 (126)
T ss_pred cHHHHHHHHhCCcHHHHHHHHHHHhhcCCcCHHHHHHHHCccHHHHH
Confidence 34566665 455566664 799999999999999877665
No 337
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.
Probab=59.70 E-value=7.8 Score=33.80 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=35.1
Q ss_pred HHHHhHHhc--CCCCCHHHHHHhcCCCCCCce-----------eecCCCeEEcChhcc
Q 043533 16 QAQLYKLIH--GRAITLSELVSALDIQPTKTT-----------VNGQEEAYGLTAAST 60 (301)
Q Consensus 16 ~l~lF~~L~--~~p~t~~elA~~~~~~~~~l~-----------ve~~~~~y~~t~~s~ 60 (301)
-+.|.+.|. .+|+|+.|||+++|++...+. ++.++++|.+++..-
T Consensus 11 al~IL~~l~~~~~~~~l~eia~~lglpksT~~RlL~tL~~~G~l~~~~~~Y~lG~~~~ 68 (248)
T TIGR02431 11 GLAVIEAFGAERPRLTLTDVAEATGLTRAAARRFLLTLVELGYVTSDGRLFWLTPRVL 68 (248)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCEEEecHHHH
Confidence 466777775 368999999999999988776 155678899988643
No 338
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=59.57 E-value=42 Score=27.42 Aligned_cols=83 Identities=12% Similarity=0.144 Sum_probs=50.7
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCC--CC----c-chhHHH-------
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLRF--IP----P-ANAFLF------- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~ri~~~~~D~~~~--~p----~-~D~i~~------- 213 (301)
.+..+|+=|||-+-.....- ...|..++.++|...--+.- ++. .|+--|+.+| +| . +|+|++
T Consensus 24 ~~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF~~~--~~~-~F~fyD~~~p~~~~~~l~~~~d~vv~DPPFl~~ 99 (162)
T PF10237_consen 24 LDDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRFEQF--GGD-EFVFYDYNEPEELPEELKGKFDVVVIDPPFLSE 99 (162)
T ss_pred CCCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchHHhc--CCc-ceEECCCCChhhhhhhcCCCceEEEECCCCCCH
Confidence 44588999988865554443 35678899999984433332 223 5666777664 44 2 788777
Q ss_pred H----HHHHHHHhcccCCCCcEEEEEee
Q 043533 214 K----ILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 ~----iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
. ..+.++..+++ +++++++..
T Consensus 100 ec~~k~a~ti~~L~k~---~~kii~~Tg 124 (162)
T PF10237_consen 100 ECLTKTAETIRLLLKP---GGKIILCTG 124 (162)
T ss_pred HHHHHHHHHHHHHhCc---cceEEEecH
Confidence 3 33444444455 677776543
No 339
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=58.97 E-value=9.6 Score=30.52 Aligned_cols=47 Identities=13% Similarity=0.045 Sum_probs=35.0
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEe
Q 043533 152 SLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIA 198 (301)
Q Consensus 152 ~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~ri~~~~ 198 (301)
..-=+.||||.=..-.+.++|+++...+--+.....+++.++.+++.
T Consensus 58 ~~GIliCGtGiG~siaANK~~GIraa~~~d~~~A~~ar~hNnaNvl~ 104 (143)
T TIGR01120 58 DGGILICGTGIGMSIAANKFAGIRAALCSEPYMAQMSRLHNDANVLC 104 (143)
T ss_pred ceEEEEcCCcHHHHHHHhcCCCeEEEEECCHHHHHHHHHhcCCcEEE
Confidence 33445799999888899999999988877777777777655544443
No 340
>PF09929 DUF2161: Uncharacterized conserved protein (DUF2161); InterPro: IPR018679 This family of various hypothetical prokaryotic proteins has no known function.
Probab=58.86 E-value=10 Score=29.21 Aligned_cols=43 Identities=16% Similarity=0.189 Sum_probs=33.4
Q ss_pred HHHhHHhc-CCCCCHHHHHHhcCCCCCCcee---------e-cCCCeEEcChhcc
Q 043533 17 AQLYKLIH-GRAITLSELVSALDIQPTKTTV---------N-GQEEAYGLTAAST 60 (301)
Q Consensus 17 l~lF~~L~-~~p~t~~elA~~~~~~~~~l~v---------e-~~~~~y~~t~~s~ 60 (301)
|.+-.+|. .||.+..+|++.++++ +...| | .+.|.|.+|+.++
T Consensus 62 l~~A~~L~~~Gp~~~~~l~~~~~~~-~A~~IL~~N~YGWFeRv~rGvY~LT~~G~ 115 (118)
T PF09929_consen 62 LRCAAALAEHGPSRPADLRKATGVP-KATSILRDNHYGWFERVERGVYALTPAGR 115 (118)
T ss_pred HHHHHHHHHcCCCCHHHHHHhcCCC-hHHHHHHhCcccceeeeccceEecCcchh
Confidence 45566777 6999999999999887 43332 3 5679999999886
No 341
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=58.68 E-value=10 Score=23.33 Aligned_cols=28 Identities=14% Similarity=0.360 Sum_probs=19.7
Q ss_pred HHHHhHHhc-CCCCCHHHHHHhcCCCCCC
Q 043533 16 QAQLYKLIH-GRAITLSELVSALDIQPTK 43 (301)
Q Consensus 16 ~l~lF~~L~-~~p~t~~elA~~~~~~~~~ 43 (301)
...|-..|. ++..|+++||+.+|+++..
T Consensus 5 D~~Il~~Lq~d~r~s~~~la~~lglS~~~ 33 (42)
T PF13404_consen 5 DRKILRLLQEDGRRSYAELAEELGLSEST 33 (42)
T ss_dssp HHHHHHHHHH-TTS-HHHHHHHHTS-HHH
T ss_pred HHHHHHHHHHcCCccHHHHHHHHCcCHHH
Confidence 445667775 5889999999999998653
No 342
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=58.40 E-value=23 Score=32.21 Aligned_cols=84 Identities=18% Similarity=0.161 Sum_probs=52.5
Q ss_pred ccCCCeEEEec-CCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeCCCCCCCCc-chhHHH-----HHHH
Q 043533 147 FEGLGSLVDVG-GGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIAGDMLRFIPP-ANAFLF-----KILK 217 (301)
Q Consensus 147 ~~~~~~vlDvG-gG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~~D~~~~~p~-~D~i~~-----~iL~ 217 (301)
.....+||-.| |+.|.++..+++.. +.++++.+. ++-.+.+++ +... ++ |..++-+. +|+++. ..+.
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~~Ga~~-vi--~~~~~~~~~~d~~i~~~~~~~~~~ 238 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALALGAAS-AG--GAYDTPPEPLDAAILFAPAGGLVP 238 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHhCCce-ec--cccccCcccceEEEECCCcHHHHH
Confidence 55567888888 45666777788876 568888887 555555554 1111 11 11111111 454332 7788
Q ss_pred HHHHhcccCCCCcEEEEEee
Q 043533 218 KRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 218 ~~~~aL~p~~~gg~l~i~e~ 237 (301)
...++|++ ||+++++-.
T Consensus 239 ~~~~~l~~---~G~~v~~G~ 255 (329)
T TIGR02822 239 PALEALDR---GGVLAVAGI 255 (329)
T ss_pred HHHHhhCC---CcEEEEEec
Confidence 89999999 899988765
No 343
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=57.67 E-value=6.9 Score=35.82 Aligned_cols=90 Identities=18% Similarity=0.235 Sum_probs=60.0
Q ss_pred ccCCCeEEEec--CCccHHHHHHHHHCCCCeEEEeechHHHhcCCC--C-CCeEEEeCCCCCCC----C-c-chhHHH--
Q 043533 147 FEGLGSLVDVG--GGNVSFSRIISEAFPGIKCTVLDLPHAVANLPE--A-DNLKYIAGDMLRFI----P-P-ANAFLF-- 213 (301)
Q Consensus 147 ~~~~~~vlDvG--gG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~--~-~ri~~~~~D~~~~~----p-~-~D~i~~-- 213 (301)
+....+||=.| ||.|.++++|+++.-...++..-.++-.+.+++ . .-|.+...|+.+.. . . +|+|+-
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~v 219 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTV 219 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECC
Confidence 56678999888 577789999999985433444444444444443 2 23444455544321 1 1 677665
Q ss_pred --HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 214 --KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 214 --~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
..+.+..++|++ +|+++.+-...
T Consensus 220 G~~~~~~~l~~l~~---~G~lv~ig~~~ 244 (326)
T COG0604 220 GGDTFAASLAALAP---GGRLVSIGALS 244 (326)
T ss_pred CHHHHHHHHHHhcc---CCEEEEEecCC
Confidence 889999999999 89999888755
No 344
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=57.63 E-value=11 Score=33.65 Aligned_cols=71 Identities=11% Similarity=0.059 Sum_probs=39.3
Q ss_pred eEEEecCCc--cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCCcchhHHH--------HHHHHHH
Q 043533 152 SLVDVGGGN--VSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLRFIPPANAFLF--------KILKKRR 220 (301)
Q Consensus 152 ~vlDvGgG~--G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~~~p~~D~i~~--------~iL~~~~ 220 (301)
+|.=||+|. |.++..|.++ +.+++++|. ++.++.+.....+.....+. +....+|+|++ ++++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~-~~~~~aDlVilavp~~~~~~~~~~l~ 78 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERGLVDEASTDL-SLLKDCDLVILALPIGLLLPPSEQLI 78 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCCCcccccCCH-hHhcCCCEEEEcCCHHHHHHHHHHHH
Confidence 355577663 3455555544 458999998 66666554322222111111 11223677666 6777887
Q ss_pred Hhccc
Q 043533 221 EAIAS 225 (301)
Q Consensus 221 ~aL~p 225 (301)
..+++
T Consensus 79 ~~l~~ 83 (279)
T PRK07417 79 PALPP 83 (279)
T ss_pred HhCCC
Confidence 77777
No 345
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=57.34 E-value=10 Score=30.33 Aligned_cols=45 Identities=16% Similarity=0.064 Sum_probs=34.3
Q ss_pred EEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEE
Q 043533 153 LVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYI 197 (301)
Q Consensus 153 vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~ri~~~ 197 (301)
.-=+.||||.=..-.+.++|+++.-.+--+.....+++.++.+++
T Consensus 58 ~GIliCGtGiG~siaANK~~GIraa~~~d~~~A~~ar~hNnaNVl 102 (144)
T TIGR00689 58 LGILICGTGIGMSIAANKFKGIRAALCVDEYTAALARQHNDANVL 102 (144)
T ss_pred eEEEEcCCcHHHHHHHhcCCCeEEEEECCHHHHHHHHHhcCCcEE
Confidence 344569999999999999999998877777777777775544443
No 346
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=56.78 E-value=8.9 Score=34.23 Aligned_cols=37 Identities=8% Similarity=0.060 Sum_probs=29.0
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHh
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVA 186 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~ 186 (301)
..++|||+|||+|.-.+-...+. ...+..+|. .++++
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVLR 153 (282)
T ss_pred cCceeEecCCcccccchhhhhhc-cceeeeEecchhhee
Confidence 36899999999999988888775 267788888 45553
No 347
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=56.71 E-value=9.9 Score=33.37 Aligned_cols=45 Identities=22% Similarity=0.307 Sum_probs=34.1
Q ss_pred HHHHhHHhcC-CCCCHHHHHHhcCCCCCCce-----------ee--cCCCeEEcChhcc
Q 043533 16 QAQLYKLIHG-RAITLSELVSALDIQPTKTT-----------VN--GQEEAYGLTAAST 60 (301)
Q Consensus 16 ~l~lF~~L~~-~p~t~~elA~~~~~~~~~l~-----------ve--~~~~~y~~t~~s~ 60 (301)
-+.|.+.|.+ +++|+.|||+++|++...+. ++ .+.++|.+++..-
T Consensus 16 ~l~IL~~l~~~~~l~l~eia~~lgl~kstv~Rll~tL~~~G~l~~~~~~~~Y~lG~~~~ 74 (257)
T PRK15090 16 VFGILQALGEEREIGITELSQRVMMSKSTVYRFLQTMKTLGYVAQEGESEKYSLTLKLF 74 (257)
T ss_pred HHHHHHHhhcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCCCCcEEecHHHH
Confidence 4556666653 68999999999999988776 23 3468899998653
No 348
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=56.49 E-value=6.5 Score=26.72 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=26.7
Q ss_pred HHHHHhHHhc-CCCCCHHHHHHhcCCCCCCce
Q 043533 15 GQAQLYKLIH-GRAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 15 ~~l~lF~~L~-~~p~t~~elA~~~~~~~~~l~ 45 (301)
.+..+|..|. .++.|++|||+.+|++...+.
T Consensus 9 ~E~~vy~~Ll~~~~~t~~eIa~~l~i~~~~v~ 40 (68)
T PF01978_consen 9 NEAKVYLALLKNGPATAEEIAEELGISRSTVY 40 (68)
T ss_dssp HHHHHHHHHHHHCHEEHHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHH
Confidence 4677888874 699999999999999998876
No 349
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=56.44 E-value=11 Score=30.31 Aligned_cols=43 Identities=16% Similarity=0.092 Sum_probs=33.7
Q ss_pred ecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEe
Q 043533 156 VGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIA 198 (301)
Q Consensus 156 vGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~ri~~~~ 198 (301)
+-||||.=..-.+.++|+++...+--+.....+++.++.+++.
T Consensus 64 liCGtGiG~siaANK~~GIRAA~~~d~~~A~~ar~hNnaNVL~ 106 (148)
T PRK05571 64 LICGTGIGMSIAANKVKGIRAALCHDTYSAHLAREHNNANVLA 106 (148)
T ss_pred EEcCCcHHHHHHHhcCCCeEEEEECCHHHHHHHHHhcCCcEEE
Confidence 4589999888999999999988887788888887755544443
No 350
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=55.43 E-value=28 Score=33.98 Aligned_cols=84 Identities=8% Similarity=0.126 Sum_probs=54.7
Q ss_pred CCCeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCC------------------------
Q 043533 149 GLGSLVDVGGGN-VSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDML------------------------ 202 (301)
Q Consensus 149 ~~~~vlDvGgG~-G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~------------------------ 202 (301)
.+.+|+=+|+|. |..++..++.. +.+++++|. ++..+.+++. ..++..-|..
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aesl-GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESM-GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-CCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 468999999986 55666677666 458999999 8888777751 1222111110
Q ss_pred -CC-CCcchhHHH----------HH-HHHHHHhcccCCCCcEEEEEee
Q 043533 203 -RF-IPPANAFLF----------KI-LKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 203 -~~-~p~~D~i~~----------~i-L~~~~~aL~p~~~gg~l~i~e~ 237 (301)
.+ ...+|+++- .+ .+++.+.|+| ||.++.+-.
T Consensus 242 ~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkp---GgvIVdvg~ 286 (509)
T PRK09424 242 FAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKP---GSVIVDLAA 286 (509)
T ss_pred HHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCC---CCEEEEEcc
Confidence 00 123677665 25 5999999999 888776643
No 351
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=54.90 E-value=22 Score=35.81 Aligned_cols=60 Identities=12% Similarity=0.077 Sum_probs=40.9
Q ss_pred CchHHHHHHHHhhcccccchHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEe
Q 043533 116 NPAINQRFNEAMASDSEIMTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVL 179 (301)
Q Consensus 116 ~~~~~~~f~~am~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~ 179 (301)
||-....-.-.++..+..-.+.++ +.++ . ..+..|-+|=|+|..+..+++.||..+++--
T Consensus 293 nPlISGLR~~Q~ATGAHYKlRsIL-~~~~--i-~~~d~l~~GDGSGGita~lLR~~p~sr~iFN 352 (675)
T PF14314_consen 293 NPLISGLRLFQLATGAHYKLRSIL-KNLN--I-KYRDALCGGDGSGGITACLLRMNPTSRGIFN 352 (675)
T ss_pred CcchhhhhhhcccccchhhHHHHH-HhcC--C-CcceeEEEecCchHHHHHHHHhCcccceeee
Confidence 444443333333444445567788 7776 3 3466788899999999999999999987644
No 352
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=54.77 E-value=35 Score=29.29 Aligned_cols=92 Identities=11% Similarity=0.139 Sum_probs=51.3
Q ss_pred CCCeEEEecCCcc----HHHHHHHHHCCCCeEEEeec-hHHH----hcCCC---CCCeEEEeCCCCC----CCCcchhHH
Q 043533 149 GLGSLVDVGGGNV----SFSRIISEAFPGIKCTVLDL-PHAV----ANLPE---ADNLKYIAGDMLR----FIPPANAFL 212 (301)
Q Consensus 149 ~~~~vlDvGgG~G----~~~~~l~~~~P~~~~~~~Dl-p~~~----~~a~~---~~ri~~~~~D~~~----~~p~~D~i~ 212 (301)
+.+.|+++.++.| .++.+.+.++-+-+.+.+-. ++-. +.... .+-++|+.||..+ .+...|.++
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~v 120 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFVV 120 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEEE
Confidence 3578888865433 34444555566666555532 2211 11111 4557998888533 233477776
Q ss_pred H-----HHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 043533 213 F-----KILKKRREAIASNGERGKVIIIDIVINA 241 (301)
Q Consensus 213 ~-----~iL~~~~~aL~p~~~gg~l~i~e~~~~~ 241 (301)
. ...+++.++++. +|.|.+++.......
T Consensus 121 VDc~~~d~~~~vl~~~~~-~~~GaVVV~~Na~~r 153 (218)
T PF07279_consen 121 VDCKREDFAARVLRAAKL-SPRGAVVVCYNAFSR 153 (218)
T ss_pred EeCCchhHHHHHHHHhcc-CCCceEEEEeccccC
Confidence 6 444466666554 336888888876653
No 353
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=54.17 E-value=23 Score=32.91 Aligned_cols=35 Identities=11% Similarity=0.015 Sum_probs=26.0
Q ss_pred ccCCCeEEEecCCccHHHHHHHHH-CCCC---eEEEeec
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEA-FPGI---KCTVLDL 181 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~-~P~~---~~~~~Dl 181 (301)
..+..+|||+..-.|.=+..|++. ++.. .++.-|.
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~ 191 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDV 191 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEeccc
Confidence 677899999999999988887775 4332 3555565
No 354
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=53.09 E-value=13 Score=28.63 Aligned_cols=31 Identities=19% Similarity=0.315 Sum_probs=27.6
Q ss_pred HHHHHhHHhcC-CCCCHHHHHHhcCCCCCCce
Q 043533 15 GQAQLYKLIHG-RAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 15 ~~l~lF~~L~~-~p~t~~elA~~~~~~~~~l~ 45 (301)
+++.|+..|.+ ++.++.|||+.+++++..+.
T Consensus 17 tRl~IL~~L~~~~~~~v~ela~~l~lsqstvS 48 (117)
T PRK10141 17 TRLGIVLLLRESGELCVCDLCTALDQSQPKIS 48 (117)
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCcCHHHHH
Confidence 59999999975 79999999999999888776
No 355
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=52.98 E-value=9 Score=30.55 Aligned_cols=44 Identities=16% Similarity=0.109 Sum_probs=30.4
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeE
Q 043533 152 SLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLK 195 (301)
Q Consensus 152 ~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~ri~ 195 (301)
..-=+.||||.=..-.+.++|+++.-.+--+.....+++.++.+
T Consensus 58 d~GIliCgtGiG~~iaANK~~GIrAa~~~d~~~A~~ar~hNdaN 101 (140)
T PF02502_consen 58 DRGILICGTGIGMSIAANKVPGIRAALCSDPYSAKMAREHNDAN 101 (140)
T ss_dssp SEEEEEESSSHHHHHHHHTSTT--EEE-SSHHHHHHHHHTT--S
T ss_pred CeEEEEcCCChhhhhHhhcCCCEEEEeeCCHHHHHHHHHhcCCc
Confidence 34456799999999999999999988887777777777644433
No 356
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=52.65 E-value=35 Score=31.50 Aligned_cols=93 Identities=5% Similarity=0.022 Sum_probs=55.0
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-CCCeEEEeCCCCCCCCc-chhHHH
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPE-ADNLKYIAGDMLRFIPP-ANAFLF 213 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~-~~ri~~~~~D~~~~~p~-~D~i~~ 213 (301)
+.++ +..+ .-..++||=+|.-...+...|. ....++...+...-....+. +.++.|- .++-.+.+. +|.+++
T Consensus 9 ~~~~-r~~~--~~~~~~~l~~~~~~d~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~~~~~~~~~~d~~~~ 82 (342)
T PRK09489 9 EVLL-RHSD--DFEQRRVLFAGDLQDDLPAQLD--AASVRVHTQQFHHWQVLSRQMGDNARFS-LVATAEDVADCDTLIY 82 (342)
T ss_pred HHHH-hhHH--HhCCCcEEEEcCcchhhHHhhh--ccceEEehhhhHHHHHHHhhcCCceEec-cccCCccCCCCCEEEE
Confidence 3344 4444 3335789989988888888776 22334444344322221111 2344432 333333343 887776
Q ss_pred ----------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 214 ----------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 ----------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
..|.++...|+| ||.|+++-.
T Consensus 83 ~~pk~k~~~~~~l~~~~~~l~~---g~~i~~~G~ 113 (342)
T PRK09489 83 YWPKNKQEAQFQLMNLLSLLPV---GTDIFVVGE 113 (342)
T ss_pred ECCCCHHHHHHHHHHHHHhCCC---CCEEEEEEe
Confidence 788999999999 899988765
No 357
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=51.89 E-value=40 Score=29.64 Aligned_cols=96 Identities=8% Similarity=0.047 Sum_probs=66.5
Q ss_pred HHHhhhhh-cccCCCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-----hHHHhcCCCCCCeEEEeCCCCCCCC----
Q 043533 138 VVKSECKQ-IFEGLGSLVDVGGGNVSFSRIISEA-FPGIKCTVLDL-----PHAVANLPEADNLKYIAGDMLRFIP---- 206 (301)
Q Consensus 138 ~~~~~~~~-~~~~~~~vlDvGgG~G~~~~~l~~~-~P~~~~~~~Dl-----p~~~~~a~~~~ri~~~~~D~~~~~p---- 206 (301)
++ -.+++ ..+...+||=+|.++|.....+..- .|+--+..++. .+.+..|++..+|--+.-|+..|..
T Consensus 145 I~-gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRml 223 (317)
T KOG1596|consen 145 IL-GGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRML 223 (317)
T ss_pred hh-cCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeee
Confidence 44 44443 2566789999999999988887764 57777777776 3566667767777666678876532
Q ss_pred --cchhHHH---------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 207 --PANAFLF---------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 207 --~~D~i~~---------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
-.|+|+. .+.-++.--|++ ||.++|.=.
T Consensus 224 VgmVDvIFaDvaqpdq~RivaLNA~~FLk~---gGhfvisik 262 (317)
T KOG1596|consen 224 VGMVDVIFADVAQPDQARIVALNAQYFLKN---GGHFVISIK 262 (317)
T ss_pred eeeEEEEeccCCCchhhhhhhhhhhhhhcc---CCeEEEEEe
Confidence 1688887 344567778898 887776543
No 358
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=51.61 E-value=34 Score=31.02 Aligned_cols=48 Identities=21% Similarity=0.351 Sum_probs=34.9
Q ss_pred ecCCccHHHHH----HHHHCCCCeEEEeec------hHHHhcCCCCCCeEEEeCCCCC
Q 043533 156 VGGGNVSFSRI----ISEAFPGIKCTVLDL------PHAVANLPEADNLKYIAGDMLR 203 (301)
Q Consensus 156 vGgG~G~~~~~----l~~~~P~~~~~~~Dl------p~~~~~a~~~~ri~~~~~D~~~ 203 (301)
|=||.|..+.. +++++|+.+++++|. ++.+......+|..|+.+|..+
T Consensus 5 VTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D 62 (340)
T COG1088 5 VTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICD 62 (340)
T ss_pred EecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccC
Confidence 34677775554 556799988999996 3444444447899999999975
No 359
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.17 E-value=19 Score=29.40 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=22.6
Q ss_pred chhHHH-------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 208 ANAFLF-------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 208 ~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
+|+|+. ..++.+++.|+| ||.|-|.=
T Consensus 48 ~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp---~G~LriAv 86 (185)
T COG4627 48 VDAIYAEHVLEHLTYDEGTSALKECHRFLRP---GGKLRIAV 86 (185)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHhCc---CcEEEEEc
Confidence 899887 889999999999 89887753
No 360
>PHA02943 hypothetical protein; Provisional
Probab=51.13 E-value=25 Score=28.35 Aligned_cols=109 Identities=7% Similarity=0.101 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhHHhcCCCCCHHHHHHhcCCCCCCce----e-ecCCCeEEcChhcc---hhhcCCCCChhhhhhhhcCcc
Q 043533 10 KELFQGQAQLYKLIHGRAITLSELVSALDIQPTKTT----V-NGQEEAYGLTAAST---LLIKDKPYCLSPTVSVFVDPF 81 (301)
Q Consensus 10 ~~~~~~~l~lF~~L~~~p~t~~elA~~~~~~~~~l~----v-e~~~~~y~~t~~s~---~L~~~~~~~l~~~~~~~~~~~ 81 (301)
++++.-..++.+.|+.|..|.+|||+++|++-..++ + |+++ ...--+.|+ ....+. ...+.+ ++.
T Consensus 7 d~v~~R~~eILE~Lk~G~~TtseIAkaLGlS~~qa~~~LyvLErEG-~VkrV~~G~~tyw~l~~d--ay~~~v----~~~ 79 (165)
T PHA02943 7 DTVHTRMIKTLRLLADGCKTTSRIANKLGVSHSMARNALYQLAKEG-MVLKVEIGRAAIWCLDED--AYTNLV----FEI 79 (165)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHCCCHHHHHHHHHHHHHcC-ceEEEeecceEEEEEChH--HHHHHH----HHH
Confidence 345555677888888899999999999999988877 2 4332 222233432 122221 122222 112
Q ss_pred chhhHHHHHhhhcCCCCchhHHhhCCChhHHhhcCchHHHHHHHHhhcccc
Q 043533 82 FVAPFQSLSSWFKGTELTLWETVHGIKFWEFMNQNPAINQRFNEAMASDSE 132 (301)
Q Consensus 82 ~~~~~~~L~~~l~~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~am~~~~~ 132 (301)
...|-..+++.. -.| .....++.....|++....|.+...-.++
T Consensus 80 ----~Relwrlv~s~~-~kf--i~p~~l~~li~kd~~a~~~~ak~v~v~~r 123 (165)
T PHA02943 80 ----KRELWRLVCNSR-LKF--ITPSRLLRLIAKDTEAHNIFAKYVPVNSR 123 (165)
T ss_pred ----HHHHHHHHHhcc-ccc--cChHHHHHHHHhCHHHHHHHHHhcCcccc
Confidence 234444555543 111 11134566666788777777777654443
No 361
>PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length. The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator.
Probab=51.11 E-value=15 Score=26.94 Aligned_cols=31 Identities=6% Similarity=0.093 Sum_probs=26.1
Q ss_pred HHHHHhHHhcC---CCCCHHHHHHhcCCCCCCce
Q 043533 15 GQAQLYKLIHG---RAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 15 ~~l~lF~~L~~---~p~t~~elA~~~~~~~~~l~ 45 (301)
++.+++..|.+ .+.++.|||..+++++..+.
T Consensus 10 ~R~~vl~~L~~~yp~~~~~~eIar~v~~~~snV~ 43 (90)
T PF07381_consen 10 VRKKVLEYLCSIYPEPAYPSEIARSVGSDYSNVL 43 (90)
T ss_pred HHHHHHHHHHHcCCCcCCHHHHHHHHCCCHHHHH
Confidence 57778888854 57999999999999998776
No 362
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=50.26 E-value=14 Score=33.69 Aligned_cols=30 Identities=27% Similarity=0.465 Sum_probs=24.9
Q ss_pred eEEEecCCc--cHHHHHHHHHCCCCeEEEeec
Q 043533 152 SLVDVGGGN--VSFSRIISEAFPGIKCTVLDL 181 (301)
Q Consensus 152 ~vlDvGgG~--G~~~~~l~~~~P~~~~~~~Dl 181 (301)
+|+-||.|. |-....++-++|+++++++|.
T Consensus 3 kiccigagyvggptcavia~kcp~i~vtvvd~ 34 (481)
T KOG2666|consen 3 KICCIGAGYVGGPTCAVIALKCPDIEVTVVDI 34 (481)
T ss_pred eEEEecCcccCCcchheeeecCCceEEEEEec
Confidence 577788773 557777888999999999998
No 363
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=50.13 E-value=20 Score=33.65 Aligned_cols=79 Identities=19% Similarity=0.230 Sum_probs=53.5
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeech----HHHhcCCC----CCCeEEEeCCCCCCCCc-chhHHH--------
Q 043533 151 GSLVDVGGGNVSFSRIISEAFPGIKCTVLDLP----HAVANLPE----ADNLKYIAGDMLRFIPP-ANAFLF-------- 213 (301)
Q Consensus 151 ~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp----~~~~~a~~----~~ri~~~~~D~~~~~p~-~D~i~~-------- 213 (301)
..|+-|+-..|.++..++...|. .+.|.- .....++. .+.+++. +...++|. +|+|++
T Consensus 46 ~~~~i~nd~fGal~~~l~~~~~~---~~~ds~~~~~~~~~n~~~n~~~~~~~~~~--~~~~~~~~~~d~vl~~~PK~~~~ 120 (378)
T PRK15001 46 GPVLILNDAFGALSCALAEHKPY---SIGDSYISELATRENLRLNGIDESSVKFL--DSTADYPQQPGVVLIKVPKTLAL 120 (378)
T ss_pred CCEEEEcCchhHHHHHHHhCCCC---eeehHHHHHHHHHHHHHHcCCCcccceee--cccccccCCCCEEEEEeCCCHHH
Confidence 38999999999999999976663 346651 11112221 2234444 44446676 898887
Q ss_pred --HHHHHHHHhcccCCCCcEEEEEee
Q 043533 214 --KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 --~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
..|..++..++| |+.+++-+.
T Consensus 121 l~~~l~~l~~~l~~---~~~ii~g~~ 143 (378)
T PRK15001 121 LEQQLRALRKVVTS---DTRIIAGAK 143 (378)
T ss_pred HHHHHHHHHhhCCC---CCEEEEEEe
Confidence 888899999999 788776554
No 364
>PF08280 HTH_Mga: M protein trans-acting positive regulator (MGA) HTH domain; InterPro: IPR013199 Mga is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions [].; PDB: 2WTE_A 3SQN_A.
Probab=50.00 E-value=4.8 Score=26.76 Aligned_cols=31 Identities=32% Similarity=0.419 Sum_probs=25.2
Q ss_pred HHHHHhHHhc-CCCCCHHHHHHhcCCCCCCce
Q 043533 15 GQAQLYKLIH-GRAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 15 ~~l~lF~~L~-~~p~t~~elA~~~~~~~~~l~ 45 (301)
-++.|.+.|. ++..|+.|||+.++++++.++
T Consensus 6 rq~~Ll~~L~~~~~~~~~ela~~l~~S~rti~ 37 (59)
T PF08280_consen 6 RQLKLLELLLKNKWITLKELAKKLNISERTIK 37 (59)
T ss_dssp HHHHHHHHHHHHTSBBHHHHHHHCTS-HHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHCCCHHHHH
Confidence 4677888885 478999999999999988776
No 365
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=49.92 E-value=34 Score=35.02 Aligned_cols=138 Identities=10% Similarity=0.077 Sum_probs=76.7
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------------------CCCeEEEeCCCCCCC
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----------------------ADNLKYIAGDMLRFI 205 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----------------------~~ri~~~~~D~~~~~ 205 (301)
.++|.-||+|+=...++..-..-+.+++++|. ++.++.+.. ..||++. .|+ +.+
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~~ 390 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDY-AGF 390 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH-HHh
Confidence 36799999988444444443444889999999 666554321 2466654 244 334
Q ss_pred CcchhHHH----------HHHHHHHHhcccCCCCcEEEEEee-eeCCCccchhhhhhhhhhchhh--------ccc-cCC
Q 043533 206 PPANAFLF----------KILKKRREAIASNGERGKVIIIDI-VINAEEEEHELTETKFLFDIVM--------SVN-ATG 265 (301)
Q Consensus 206 p~~D~i~~----------~iL~~~~~aL~p~~~gg~l~i~e~-~~~~~~~~~~~~~~~~~~d~~~--------~~~-~~g 265 (301)
.++|+|+= ++++++-+.++| + .++...+ .++-..-........++..++. ++. ..|
T Consensus 391 ~~aDlViEav~E~l~~K~~vf~~l~~~~~~---~-~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g 466 (715)
T PRK11730 391 ERVDVVVEAVVENPKVKAAVLAEVEQKVRE---D-TILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRG 466 (715)
T ss_pred cCCCEEEecccCcHHHHHHHHHHHHhhCCC---C-cEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCC
Confidence 44777663 899999999998 3 4443332 1111000000000011121111 111 112
Q ss_pred c---cCCHHHHHHHHHhCCCceeEEEecCCc
Q 043533 266 K---ERTESEWAKLFFDAVFSHYKITPIFGM 293 (301)
Q Consensus 266 ~---~rt~~e~~~ll~~aGf~~~~~~~~~~~ 293 (301)
. +.+.+...++++..|.+.+.+...+|+
T Consensus 467 ~~T~~~~~~~~~~~~~~lgk~pv~v~d~pGf 497 (715)
T PRK11730 467 EKTSDETIATVVAYASKMGKTPIVVNDCPGF 497 (715)
T ss_pred CCCCHHHHHHHHHHHHHhCCceEEecCcCch
Confidence 1 234566778899999999999888775
No 366
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=49.73 E-value=17 Score=29.39 Aligned_cols=48 Identities=19% Similarity=0.203 Sum_probs=35.3
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEe
Q 043533 151 GSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIA 198 (301)
Q Consensus 151 ~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~ri~~~~ 198 (301)
...-=+.||||.=..-.+.++|++++-.+--+.....+++.++-+.+.
T Consensus 59 ~d~GIliCGTGiG~~iaANKv~GiraAl~~D~~sA~~ar~hNnaNvl~ 106 (151)
T COG0698 59 ADLGILICGTGIGMSIAANKVPGIRAALVSDPTSAKLAREHNNANVLC 106 (151)
T ss_pred CCeeEEEecCChhHHHHhhccCCeEEEEecCHHHHHHHHhcCCCcEEE
Confidence 444556799999999999999999976666677777777655544443
No 367
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=49.64 E-value=5.4 Score=28.45 Aligned_cols=34 Identities=18% Similarity=0.397 Sum_probs=24.0
Q ss_pred CCCCHHHHHHhcCCCCCCce-----------e--ec-CCCeEEcChhc
Q 043533 26 RAITLSELVSALDIQPTKTT-----------V--NG-QEEAYGLTAAS 59 (301)
Q Consensus 26 ~p~t~~elA~~~~~~~~~l~-----------v--e~-~~~~y~~t~~s 59 (301)
+++|.+|||+++++++..++ | .+ .+|.|.++...
T Consensus 24 ~~~s~~eiA~~~~i~~~~l~kil~~L~~~Gli~s~~G~~GGy~L~~~~ 71 (83)
T PF02082_consen 24 KPVSSKEIAERLGISPSYLRKILQKLKKAGLIESSRGRGGGYRLARPP 71 (83)
T ss_dssp C-BEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETSTTSEEEESS-C
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHhhCCeeEecCCCCCceeecCCH
Confidence 46999999999999999998 1 23 34777776644
No 368
>PRK11569 transcriptional repressor IclR; Provisional
Probab=49.59 E-value=14 Score=32.78 Aligned_cols=48 Identities=19% Similarity=0.300 Sum_probs=36.0
Q ss_pred HHHHHHHhHHhcC--CCCCHHHHHHhcCCCCCCce-----------ee--cCCCeEEcChhcc
Q 043533 13 FQGQAQLYKLIHG--RAITLSELVSALDIQPTKTT-----------VN--GQEEAYGLTAAST 60 (301)
Q Consensus 13 ~~~~l~lF~~L~~--~p~t~~elA~~~~~~~~~l~-----------ve--~~~~~y~~t~~s~ 60 (301)
+.--|.|.+.|.+ +|+|+.|||+++|++...+. ++ .+.++|.+++..-
T Consensus 27 l~ral~IL~~l~~~~~~~~lseia~~lglpksTv~RlL~tL~~~G~l~~~~~~~~Y~lG~~l~ 89 (274)
T PRK11569 27 LTRGLKLLEWIAESNGSVALTELAQQAGLPNSTTHRLLTTMQQQGFVRQVGELGHWAIGAHAF 89 (274)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCCCCeEecCHHHH
Confidence 3345677787864 68999999999999988776 13 3568899987643
No 369
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=49.10 E-value=4.5 Score=28.86 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=33.3
Q ss_pred HHHHHhHHhcC-CCCCHHHHHHhcCCCCCCce-----------e----ecCCC----eEEcChhcc
Q 043533 15 GQAQLYKLIHG-RAITLSELVSALDIQPTKTT-----------V----NGQEE----AYGLTAAST 60 (301)
Q Consensus 15 ~~l~lF~~L~~-~p~t~~elA~~~~~~~~~l~-----------v----e~~~~----~y~~t~~s~ 60 (301)
+||+|...|.. +.+++.+|.+.++++...+. | +..++ .|++|+.++
T Consensus 1 vRl~Il~~L~~~~~~~f~~L~~~l~lt~g~Ls~hL~~Le~~GyV~~~k~~~~~~p~t~~~lT~~Gr 66 (80)
T PF13601_consen 1 VRLAILALLYANEEATFSELKEELGLTDGNLSKHLKKLEEAGYVEVEKEFEGRRPRTWYSLTDKGR 66 (80)
T ss_dssp HHHHHHHHHHHHSEEEHHHHHHHTT--HHHHHHHHHHHHHTTSEEEEEE-SSS--EEEEEE-HHHH
T ss_pred CHHHHHHHHhhcCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEeccCCCCeEEEEECHHHH
Confidence 57888999975 78999999999999988877 2 11222 399999987
No 370
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=49.06 E-value=4.9 Score=32.45 Aligned_cols=73 Identities=16% Similarity=0.244 Sum_probs=40.8
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------------CCCeEEEeCCCCCCCCcchhHHH----
Q 043533 152 SLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------------ADNLKYIAGDMLRFIPPANAFLF---- 213 (301)
Q Consensus 152 ~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------------~~ri~~~~~D~~~~~p~~D~i~~---- 213 (301)
+|.=+|+|.+..+.+..-..-+-+++++.. ++.++.... ..++.+ .-|+.+-+..+|+|++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~~~ad~IiiavPs 79 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEALEDADIIIIAVPS 79 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHHTT-SEEEE-S-G
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHhCcccEEEecccH
Confidence 356678887776655333322457888887 444443321 123433 2344222344787776
Q ss_pred ----HHHHHHHHhccc
Q 043533 214 ----KILKKRREAIAS 225 (301)
Q Consensus 214 ----~iL~~~~~aL~p 225 (301)
.+++++...+++
T Consensus 80 ~~~~~~~~~l~~~l~~ 95 (157)
T PF01210_consen 80 QAHREVLEQLAPYLKK 95 (157)
T ss_dssp GGHHHHHHHHTTTSHT
T ss_pred HHHHHHHHHHhhccCC
Confidence 777777777766
No 371
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=48.77 E-value=25 Score=32.02 Aligned_cols=75 Identities=16% Similarity=0.226 Sum_probs=52.7
Q ss_pred CCeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC---CCCcchhHHH---------
Q 043533 150 LGSLVDVGGGN-VSFSRIISEAFPGIKCTVLDL-PHAVANLPE--ADNLKYIAGDMLR---FIPPANAFLF--------- 213 (301)
Q Consensus 150 ~~~vlDvGgG~-G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~--~~ri~~~~~D~~~---~~p~~D~i~~--------- 213 (301)
..+|+-||||. |..+..++--- +..++++|+ .+-+..... ..|+...--+... .++.+|+++-
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgaka 246 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKA 246 (371)
T ss_pred CccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCC
Confidence 46788888885 66666666543 678999999 566655554 6777766655433 3555887765
Q ss_pred --HHHHHHHHhccc
Q 043533 214 --KILKKRREAIAS 225 (301)
Q Consensus 214 --~iL~~~~~aL~p 225 (301)
-+.+++.+.|+|
T Consensus 247 PkLvt~e~vk~Mkp 260 (371)
T COG0686 247 PKLVTREMVKQMKP 260 (371)
T ss_pred ceehhHHHHHhcCC
Confidence 677888999999
No 372
>PHA01634 hypothetical protein
Probab=48.56 E-value=34 Score=27.01 Aligned_cols=39 Identities=8% Similarity=-0.164 Sum_probs=29.4
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLP 189 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~ 189 (301)
.++|+|||++.|..++-++-+. .-+++.++. |...+..+
T Consensus 29 ~KtV~dIGA~iGdSaiYF~l~G-AK~Vva~E~~~kl~k~~e 68 (156)
T PHA01634 29 QRTIQIVGADCGSSALYFLLRG-ASFVVQYEKEEKLRKKWE 68 (156)
T ss_pred CCEEEEecCCccchhhHHhhcC-ccEEEEeccCHHHHHHHH
Confidence 5899999999999999988774 336778877 54444443
No 373
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=48.00 E-value=25 Score=32.21 Aligned_cols=86 Identities=14% Similarity=0.173 Sum_probs=51.7
Q ss_pred CCCeEEEecCC-ccHHHHHHHHHCCCCeEEEeec----hHHHhcCCCCCCeEEEe---CCCCC--CCCcchhHHH-----
Q 043533 149 GLGSLVDVGGG-NVSFSRIISEAFPGIKCTVLDL----PHAVANLPEADNLKYIA---GDMLR--FIPPANAFLF----- 213 (301)
Q Consensus 149 ~~~~vlDvGgG-~G~~~~~l~~~~P~~~~~~~Dl----p~~~~~a~~~~ri~~~~---~D~~~--~~p~~D~i~~----- 213 (301)
...+|+-+|+| .|.++..+++.. +.++++++. ++-.+.+++. ..+++. .|+.+ ....+|+++-
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~~-Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~ 249 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEEL-GATYVNSSKTPVAEVKLVGEFDLIIEATGVP 249 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHc-CCEEecCCccchhhhhhcCCCCEEEECcCCH
Confidence 45677777764 466777788876 568888874 4444444431 112211 11110 1112565554
Q ss_pred HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 214 KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 214 ~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
..+.+..+.|++ ||+++++....
T Consensus 250 ~~~~~~~~~l~~---~G~~v~~G~~~ 272 (355)
T cd08230 250 PLAFEALPALAP---NGVVILFGVPG 272 (355)
T ss_pred HHHHHHHHHccC---CcEEEEEecCC
Confidence 678899999999 89998876543
No 374
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=47.92 E-value=1.1e+02 Score=27.72 Aligned_cols=88 Identities=9% Similarity=0.225 Sum_probs=53.0
Q ss_pred ccCCCeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeC-----CCCCC---C-C--cch---
Q 043533 147 FEGLGSLVDVGGGN-VSFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIAG-----DMLRF---I-P--PAN--- 209 (301)
Q Consensus 147 ~~~~~~vlDvGgG~-G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~~-----D~~~~---~-p--~~D--- 209 (301)
.....+|+-.|+|. |..+..+++.. +.+++++|. ++-.+.+++ +....+... |+.+. + + .+|
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~ 242 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTG 242 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCc
Confidence 45567888888755 77778888887 558888887 665555543 111111111 11110 0 1 133
Q ss_pred -hHHH-----HHHHHHHHhcccCCCCcEEEEEeee
Q 043533 210 -AFLF-----KILKKRREAIASNGERGKVIIIDIV 238 (301)
Q Consensus 210 -~i~~-----~iL~~~~~aL~p~~~gg~l~i~e~~ 238 (301)
+++- ..++.+.+.|++ ||+++++...
T Consensus 243 d~v~d~~g~~~~~~~~~~~l~~---~G~iv~~G~~ 274 (349)
T TIGR03201 243 WKIFECSGSKPGQESALSLLSH---GGTLVVVGYT 274 (349)
T ss_pred CEEEECCCChHHHHHHHHHHhc---CCeEEEECcC
Confidence 3332 677888899999 8999988754
No 375
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=47.82 E-value=48 Score=34.04 Aligned_cols=138 Identities=12% Similarity=0.098 Sum_probs=76.7
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------------------CCCeEEEeCCCCCCC
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----------------------ADNLKYIAGDMLRFI 205 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----------------------~~ri~~~~~D~~~~~ 205 (301)
.++|.-||+|+=.-.++.+-..-+.+++++|. ++.++.+.. ..||++.. |+ +.+
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~-~~~ 412 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTL-DY-SGF 412 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC-CH-HHh
Confidence 46789999886444444444445889999998 666555431 24666542 44 345
Q ss_pred CcchhHHH----------HHHHHHHHhcccCCCCcEEEEEee-eeCCCccchhhhhhhhhhchhh--------ccc-cCC
Q 043533 206 PPANAFLF----------KILKKRREAIASNGERGKVIIIDI-VINAEEEEHELTETKFLFDIVM--------SVN-ATG 265 (301)
Q Consensus 206 p~~D~i~~----------~iL~~~~~aL~p~~~gg~l~i~e~-~~~~~~~~~~~~~~~~~~d~~~--------~~~-~~g 265 (301)
.++|+|+= ++++++-+.++| + .++...+ .++-..--........+..++. ++. ..|
T Consensus 413 ~~aDlViEAv~E~l~~K~~vf~~l~~~~~~---~-~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~LvEvv~g 488 (737)
T TIGR02441 413 KNADMVIEAVFEDLSLKHKVIKEVEAVVPP---H-CIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLEIITH 488 (737)
T ss_pred ccCCeehhhccccHHHHHHHHHHHHhhCCC---C-cEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceEEEeCC
Confidence 45787774 999999999999 4 4444332 2111100000000011111111 111 112
Q ss_pred c---cCCHHHHHHHHHhCCCceeEEEecCCc
Q 043533 266 K---ERTESEWAKLFFDAVFSHYKITPIFGM 293 (301)
Q Consensus 266 ~---~rt~~e~~~ll~~aGf~~~~~~~~~~~ 293 (301)
. +-+.+...+++++.|...+.+...+|+
T Consensus 489 ~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGF 519 (737)
T TIGR02441 489 DGTSKDTLASAVAVGLKQGKVVIVVKDGPGF 519 (737)
T ss_pred CCCCHHHHHHHHHHHHHCCCeEEEECCcCCc
Confidence 1 123445667888999999988877774
No 376
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=47.78 E-value=1.2e+02 Score=25.74 Aligned_cols=92 Identities=12% Similarity=0.099 Sum_probs=55.8
Q ss_pred CCCeEEEecCCccHHHHHHH----HHCCCCeEEEeech--HHHhcCCCCCCeEEEeCCCCCC-CC-------c-chhHHH
Q 043533 149 GLGSLVDVGGGNVSFSRIIS----EAFPGIKCTVLDLP--HAVANLPEADNLKYIAGDMLRF-IP-------P-ANAFLF 213 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~----~~~P~~~~~~~Dlp--~~~~~a~~~~ri~~~~~D~~~~-~p-------~-~D~i~~ 213 (301)
.+..|++.|.-.|.-++-.+ .-....+++++|+. .--..|++.++|.|+.|+-.+| +- . +--|+.
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv 148 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV 148 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE
Confidence 36789999976666444433 33445788888872 2113334478999999987653 11 0 111111
Q ss_pred ------------HHHHHHHHhcccCCCCcEEEEEeeeeCCCc
Q 043533 214 ------------KILKKRREAIASNGERGKVIIIDIVINAEE 243 (301)
Q Consensus 214 ------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~ 243 (301)
..|+-....|.- |.++++.|..+++-.
T Consensus 149 ilDsdHs~~hvLAel~~~~pllsa---G~Y~vVeDs~v~dlp 187 (237)
T COG3510 149 ILDSDHSMEHVLAELKLLAPLLSA---GDYLVVEDSNVNDLP 187 (237)
T ss_pred EecCCchHHHHHHHHHHhhhHhhc---CceEEEecccccCCC
Confidence 444555566666 788888888776644
No 377
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=47.61 E-value=19 Score=29.75 Aligned_cols=45 Identities=18% Similarity=0.031 Sum_probs=34.5
Q ss_pred EEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEE
Q 043533 153 LVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYI 197 (301)
Q Consensus 153 vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~ri~~~ 197 (301)
.-=+.||||.=..-.+.++|+++.-.+--+.....+++.++.+++
T Consensus 60 ~GIliCGTGiG~siaANK~~GIRAA~~~d~~~A~~ar~hNnaNVL 104 (171)
T PRK12615 60 LGVCICGTGVGINNAVNKVPGIRSALVRDMTTALYAKEELNANVI 104 (171)
T ss_pred EEEEEcCCcHHHHHHHhcCCCeEEEEeCCHHHHHHHHHhcCCcEE
Confidence 344569999988889999999998777777777777775555444
No 378
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=47.48 E-value=17 Score=33.51 Aligned_cols=71 Identities=17% Similarity=0.160 Sum_probs=37.6
Q ss_pred HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchh-----hhh-hhhhhchhhcc--------cc--CCccCCHHHHHHHH
Q 043533 214 KILKKRREAIASNGERGKVIIIDIVINAEEEEHE-----LTE-TKFLFDIVMSV--------NA--TGKERTESEWAKLF 277 (301)
Q Consensus 214 ~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~-----~~~-~~~~~d~~~~~--------~~--~g~~rt~~e~~~ll 277 (301)
.+|+.=++-|+| ||++++.-...++...... +.. ...+.|+.--- .+ --..++.+|+++++
T Consensus 164 ~FL~~Ra~ELv~---GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I 240 (334)
T PF03492_consen 164 SFLKARAEELVP---GGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAII 240 (334)
T ss_dssp HHHHHHHHHEEE---EEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHH
T ss_pred HHHHHhhheecc---CcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHH
Confidence 788888899999 8988887776665211110 000 01222222100 00 11347999999999
Q ss_pred HhCC-CceeEE
Q 043533 278 FDAV-FSHYKI 287 (301)
Q Consensus 278 ~~aG-f~~~~~ 287 (301)
++.| |++.++
T Consensus 241 ~~~gsF~I~~l 251 (334)
T PF03492_consen 241 EEEGSFEIEKL 251 (334)
T ss_dssp HHHTSEEEEEE
T ss_pred hcCCCEEEEEE
Confidence 9876 555443
No 379
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=47.29 E-value=19 Score=25.87 Aligned_cols=31 Identities=23% Similarity=0.417 Sum_probs=26.0
Q ss_pred HHHHHhHHhcC-CCCCHHHHHHhcCCCCCCce
Q 043533 15 GQAQLYKLIHG-RAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 15 ~~l~lF~~L~~-~p~t~~elA~~~~~~~~~l~ 45 (301)
.++.++..|.. ++.|..+||+.++++...+.
T Consensus 11 ~~~~il~~l~~~~~~~~~~la~~~~~s~~~i~ 42 (101)
T smart00347 11 TQFLVLRILYEEGPLSVSELAKRLGVSPSTVT 42 (101)
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCCCchhHH
Confidence 46778888864 67999999999999988776
No 380
>PF10771 DUF2582: Protein of unknown function (DUF2582); InterPro: IPR019707 This entry represents conserved proteins found in bacteria and archaea. The function is not known. ; PDB: 2L02_B 2L01_A.
Probab=47.26 E-value=17 Score=24.92 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=23.0
Q ss_pred HhHHhcC-CCCCHHHHHHhcCCCCCCce
Q 043533 19 LYKLIHG-RAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 19 lF~~L~~-~p~t~~elA~~~~~~~~~l~ 45 (301)
|+++|.+ ++.|+.+|++.++++..-+.
T Consensus 13 Vw~~L~~~~~~s~~el~k~~~l~~~~~~ 40 (65)
T PF10771_consen 13 VWQLLNENGEWSVSELKKATGLSDKEVY 40 (65)
T ss_dssp HHHHHCCSSSEEHHHHHHHCT-SCHHHH
T ss_pred HHHHHhhCCCcCHHHHHHHhCcCHHHHH
Confidence 8999987 89999999999999777655
No 381
>PRK10163 DNA-binding transcriptional repressor AllR; Provisional
Probab=47.21 E-value=17 Score=32.30 Aligned_cols=46 Identities=13% Similarity=0.163 Sum_probs=34.9
Q ss_pred HHHHHhHHhcC--CCCCHHHHHHhcCCCCCCce-----------e--ecCCCeEEcChhcc
Q 043533 15 GQAQLYKLIHG--RAITLSELVSALDIQPTKTT-----------V--NGQEEAYGLTAAST 60 (301)
Q Consensus 15 ~~l~lF~~L~~--~p~t~~elA~~~~~~~~~l~-----------v--e~~~~~y~~t~~s~ 60 (301)
--+.|.+.|.. +++|+.|||+++|++...+. + +...++|.+++..-
T Consensus 26 r~l~IL~~~~~~~~~~tl~eIa~~lglpkStv~RlL~tL~~~G~l~~~~~~~~Y~lG~~l~ 86 (271)
T PRK10163 26 RGIAILQYLEKSGGSSSVSDISLNLDLPLSTTFRLLKVLQAADFVYQDSQLGWWHIGLGVF 86 (271)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCCCCeEEecHHHH
Confidence 35677778853 57999999999999988776 2 23568899887643
No 382
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=47.00 E-value=19 Score=29.73 Aligned_cols=45 Identities=13% Similarity=0.002 Sum_probs=34.4
Q ss_pred EEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEe
Q 043533 154 VDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIA 198 (301)
Q Consensus 154 lDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~ri~~~~ 198 (301)
-=+-||||.=..-.++++|+++.-.+--+.....+++.++.+++.
T Consensus 61 GIliCGTGiG~siaANKv~GIRAAl~~d~~sA~~ar~hNnaNVL~ 105 (171)
T TIGR01119 61 GVCICGTGVGINNAVNKVPGVRSALVRDMTSALYAKEELNANVIG 105 (171)
T ss_pred EEEEcCCcHHHHHHHhcCCCeEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 334689999888899999999987777777777777755555444
No 383
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=46.96 E-value=44 Score=29.85 Aligned_cols=86 Identities=10% Similarity=0.137 Sum_probs=52.8
Q ss_pred ccCCCeEEEecCC-ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCC---CC----CCCC--cchhHHH--
Q 043533 147 FEGLGSLVDVGGG-NVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGD---ML----RFIP--PANAFLF-- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG-~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D---~~----~~~p--~~D~i~~-- 213 (301)
+....+||..|+| .|..++.++++. +.++++.+. ++..+.+++. .++.+..+ .. ...+ .+|+++-
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~ 240 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKEL-GADEVLNSLDDSPKDKKAAGLGGGFDVIFDFV 240 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHh-CCCEEEcCCCcCHHHHHHHhcCCCceEEEECC
Confidence 5556788888765 478888888876 577888876 5555444321 11111110 00 0011 2566553
Q ss_pred ---HHHHHHHHhcccCCCCcEEEEEee
Q 043533 214 ---KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 ---~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
..++++.+.|++ +|+++.+..
T Consensus 241 g~~~~~~~~~~~l~~---~G~~v~~g~ 264 (338)
T cd08254 241 GTQPTFEDAQKAVKP---GGRIVVVGL 264 (338)
T ss_pred CCHHHHHHHHHHhhc---CCEEEEECC
Confidence 688999999999 899887753
No 384
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=46.91 E-value=22 Score=34.03 Aligned_cols=34 Identities=24% Similarity=0.429 Sum_probs=27.4
Q ss_pred CeEEEecCC-ccHHHH-HHHHHCCCCeEEEeechHH
Q 043533 151 GSLVDVGGG-NVSFSR-IISEAFPGIKCTVLDLPHA 184 (301)
Q Consensus 151 ~~vlDvGgG-~G~~~~-~l~~~~P~~~~~~~Dlp~~ 184 (301)
..|+-||+| +|..+. .|+++.|+.+++++|-...
T Consensus 25 ~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~ 60 (460)
T TIGR03329 25 ADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC 60 (460)
T ss_pred eCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence 479999999 777666 6777789999999997544
No 385
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=46.59 E-value=36 Score=32.99 Aligned_cols=87 Identities=17% Similarity=0.294 Sum_probs=51.5
Q ss_pred eEEEecCCccHHHHH--HHHHCCCCeEEEeec-hHHHhcCCC------------------CCCeEEEeCCCCC-------
Q 043533 152 SLVDVGGGNVSFSRI--ISEAFPGIKCTVLDL-PHAVANLPE------------------ADNLKYIAGDMLR------- 203 (301)
Q Consensus 152 ~vlDvGgG~G~~~~~--l~~~~P~~~~~~~Dl-p~~~~~a~~------------------~~ri~~~~~D~~~------- 203 (301)
+|.=||.|...+..+ |+++.++.+++++|. ++.++...+ ..++.+.. |..+
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~-~~~~~i~~adv 81 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFST-DVEKHVAEADI 81 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEc-CHHHHHhcCCE
Confidence 467778877665544 445556788999998 665555331 11233322 2110
Q ss_pred -----CCCc----------chhHHH-HHHHHHHHhcccCCCCcEEEEEeeeeCCCc
Q 043533 204 -----FIPP----------ANAFLF-KILKKRREAIASNGERGKVIIIDIVINAEE 243 (301)
Q Consensus 204 -----~~p~----------~D~i~~-~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~ 243 (301)
+.|. .|+-.+ ...+++.+.|++ |.++|++...+...
T Consensus 82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~----~~lVv~~STvp~Gt 133 (473)
T PLN02353 82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKS----DKIVVEKSTVPVKT 133 (473)
T ss_pred EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCC----CcEEEEeCCCCCCh
Confidence 1121 243333 888889999987 77888887666543
No 386
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=46.57 E-value=12 Score=24.87 Aligned_cols=22 Identities=14% Similarity=0.164 Sum_probs=18.9
Q ss_pred cCCCCCHHHHHHhcCCCCCCce
Q 043533 24 HGRAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 24 ~~~p~t~~elA~~~~~~~~~l~ 45 (301)
..+++|.++||+.+|++...+.
T Consensus 22 ~~~~~s~~ela~~~g~s~~tv~ 43 (67)
T cd00092 22 VQLPLTRQEIADYLGLTRETVS 43 (67)
T ss_pred ccCCcCHHHHHHHHCCCHHHHH
Confidence 3468999999999999888776
No 387
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=46.53 E-value=51 Score=23.39 Aligned_cols=35 Identities=17% Similarity=0.319 Sum_probs=21.5
Q ss_pred ccCCCeEEEecCCccH-HHHHHHHHC-CCCeEEEeec
Q 043533 147 FEGLGSLVDVGGGNVS-FSRIISEAF-PGIKCTVLDL 181 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~-~~~~l~~~~-P~~~~~~~Dl 181 (301)
..++++||-|||.+|. ++.+++..| -+...+++..
T Consensus 36 ~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~f 72 (78)
T PF12242_consen 36 INGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSF 72 (78)
T ss_dssp -TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE-
T ss_pred CCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEee
Confidence 5677899999999998 666677775 3455555443
No 388
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=46.42 E-value=7.9 Score=37.24 Aligned_cols=87 Identities=15% Similarity=0.134 Sum_probs=65.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCe-EEEeec-hHHHhcCCC-------CCCeEEEeCCCCC-----CCC-c-chhH
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIK-CTVLDL-PHAVANLPE-------ADNLKYIAGDMLR-----FIP-P-ANAF 211 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~-~~~~Dl-p~~~~~a~~-------~~ri~~~~~D~~~-----~~p-~-~D~i 211 (301)
.+.-+|||-=|++|.-+++.++.-|++. ++..|+ +..++..+. .+.++-...|+.. +.. . ||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 4467899999999999999999999984 788898 776665543 3445555566532 222 2 8888
Q ss_pred HH-------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 212 LF-------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 212 ~~-------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
-+ ..|..+.++++. ||.|.+.-+
T Consensus 188 DLDPyGs~s~FLDsAvqav~~---gGLL~vT~T 217 (525)
T KOG1253|consen 188 DLDPYGSPSPFLDSAVQAVRD---GGLLCVTCT 217 (525)
T ss_pred ecCCCCCccHHHHHHHHHhhc---CCEEEEEec
Confidence 88 999999999998 787776543
No 389
>COG4367 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.02 E-value=20 Score=26.00 Aligned_cols=37 Identities=14% Similarity=0.115 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHhHHhcCCCCCHHHHHHhcCCCCCCce
Q 043533 9 AKELFQGQAQLYKLIHGRAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 9 ~~~~~~~~l~lF~~L~~~p~t~~elA~~~~~~~~~l~ 45 (301)
|.+.=+.+-.|-..+...++|.++||.++++.+..++
T Consensus 5 ~eq~~~Tk~elqan~el~~LS~~~iA~~Ln~t~~~le 41 (97)
T COG4367 5 PEQKQRTKQELQANFELCPLSDEEIATALNWTEVKLE 41 (97)
T ss_pred HHHHHHHHHHHHHhhhhccccHHHHHHHhCCCHHHHH
Confidence 3444445555566666789999999999999887776
No 390
>PRK09834 DNA-binding transcriptional activator MhpR; Provisional
Probab=45.89 E-value=17 Score=32.06 Aligned_cols=49 Identities=14% Similarity=0.202 Sum_probs=36.4
Q ss_pred HHHHHhHHhcC--CCCCHHHHHHhcCCCCCCce-----------ee--cCCCeEEcChhcchhh
Q 043533 15 GQAQLYKLIHG--RAITLSELVSALDIQPTKTT-----------VN--GQEEAYGLTAASTLLI 63 (301)
Q Consensus 15 ~~l~lF~~L~~--~p~t~~elA~~~~~~~~~l~-----------ve--~~~~~y~~t~~s~~L~ 63 (301)
--+.|.+.|.+ +++|..|||+++|++...+. ++ .++++|.+++....|.
T Consensus 12 ral~iL~~l~~~~~~ls~~eia~~lgl~kstv~RlL~tL~~~g~v~~~~~~~~Y~Lg~~~~~l~ 75 (263)
T PRK09834 12 RGLMVLRALNRLDGGATVGLLAELTGLHRTTVRRLLETLQEEGYVRRSASDDSFRLTLKVRQLS 75 (263)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCCCcEEEcHHHHHHH
Confidence 35667777753 46999999999999988776 22 4578899998765443
No 391
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=45.85 E-value=20 Score=28.92 Aligned_cols=45 Identities=16% Similarity=0.100 Sum_probs=33.9
Q ss_pred EEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEe
Q 043533 154 VDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIA 198 (301)
Q Consensus 154 lDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~ri~~~~ 198 (301)
-=+-||||.=..-.+.++|++++..+--+.....++..++.+++.
T Consensus 65 GIliCGtGiG~siaANK~~GIRAa~~~d~~~A~~ar~hNnaNVL~ 109 (151)
T PTZ00215 65 GILVCGSGIGISIAANKVKGIRCALCHDHYTARMSRQHNNANVLA 109 (151)
T ss_pred EEEEcCCcHHHHHHHhcCCCeEEEEECCHHHHHHHHHhcCCcEEE
Confidence 334689999888999999999988777777777777655544443
No 392
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=45.81 E-value=15 Score=32.88 Aligned_cols=74 Identities=16% Similarity=0.050 Sum_probs=44.8
Q ss_pred CeEEEecCC--ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEE-eCCC-CCCCCcchhHHH--------HHHH
Q 043533 151 GSLVDVGGG--NVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYI-AGDM-LRFIPPANAFLF--------KILK 217 (301)
Q Consensus 151 ~~vlDvGgG--~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~-~~D~-~~~~p~~D~i~~--------~iL~ 217 (301)
.+|+=+|.| .|.++..+.++++...+++.|. ...++.+... .+... ..|. ......+|+|++ .+++
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l-gv~d~~~~~~~~~~~~~aD~VivavPi~~~~~~l~ 82 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL-GVIDELTVAGLAEAAAEADLVIVAVPIEATEEVLK 82 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc-CcccccccchhhhhcccCCEEEEeccHHHHHHHHH
Confidence 455666655 3556666777788888899998 5555555431 12111 1222 224445787776 7888
Q ss_pred HHHHhccc
Q 043533 218 KRREAIAS 225 (301)
Q Consensus 218 ~~~~aL~p 225 (301)
++...|++
T Consensus 83 ~l~~~l~~ 90 (279)
T COG0287 83 ELAPHLKK 90 (279)
T ss_pred HhcccCCC
Confidence 88877887
No 393
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=45.54 E-value=38 Score=30.60 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=14.6
Q ss_pred HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 ~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
.+++++.+.++...|.+.++++.
T Consensus 95 ~i~~~~~~~i~~~~~~~~vivvs 117 (306)
T cd05291 95 KIMKSIVPKIKASGFDGIFLVAS 117 (306)
T ss_pred HHHHHHHHHHHHhCCCeEEEEec
Confidence 67777776665433367777765
No 394
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=45.34 E-value=42 Score=30.72 Aligned_cols=136 Identities=14% Similarity=0.173 Sum_probs=69.4
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------------------CCCeEEEeCCCCCCCCcch
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-------------------ADNLKYIAGDMLRFIPPAN 209 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-------------------~~ri~~~~~D~~~~~p~~D 209 (301)
.++|.=||+|+=...++..-..-+.+++++|. |+.++.+.. .+|+++.. |+.+...++|
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~av~~aD 85 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEACVADAD 85 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHHHhcCCC
Confidence 46788888884333332222234789999998 665443221 13444432 3211223366
Q ss_pred hHHH----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhh----hhhhchhh--------ccccCCcc
Q 043533 210 AFLF----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTET----KFLFDIVM--------SVNATGKE 267 (301)
Q Consensus 210 ~i~~----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~----~~~~d~~~--------~~~~~g~~ 267 (301)
+|+- .+++++-+.++| +.++...+. .-.... +... .++..++. ++..-...
T Consensus 86 lViEavpE~l~vK~~lf~~l~~~~~~----~aIlaSnTS-~l~~s~--la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~ 158 (321)
T PRK07066 86 FIQESAPEREALKLELHERISRAAKP----DAIIASSTS-GLLPTD--FYARATHPERCVVGHPFNPVYLLPLVEVLGGE 158 (321)
T ss_pred EEEECCcCCHHHHHHHHHHHHHhCCC----CeEEEECCC-ccCHHH--HHHhcCCcccEEEEecCCccccCceEEEeCCC
Confidence 6654 888999999998 444433322 111110 1000 01111110 11110112
Q ss_pred CC----HHHHHHHHHhCCCceeEE-EecCCc
Q 043533 268 RT----ESEWAKLFFDAVFSHYKI-TPIFGM 293 (301)
Q Consensus 268 rt----~~e~~~ll~~aGf~~~~~-~~~~~~ 293 (301)
.| .+...+++++.|.+.+.+ ..++||
T Consensus 159 ~T~~e~~~~~~~f~~~lGk~pV~v~kd~pGF 189 (321)
T PRK07066 159 RTAPEAVDAAMGIYRALGMRPLHVRKEVPGF 189 (321)
T ss_pred CCCHHHHHHHHHHHHHcCCEeEecCCCCccH
Confidence 33 345678889999999988 467764
No 395
>PRK10637 cysG siroheme synthase; Provisional
Probab=45.31 E-value=26 Score=33.70 Aligned_cols=73 Identities=22% Similarity=0.281 Sum_probs=47.3
Q ss_pred CCeEEEecCCccHHHHH--HHHHCCCCeEEEe--ec-hHHHhcCCCCCCeEEEeCCCCC-CCCcchhHHH-----HHHHH
Q 043533 150 LGSLVDVGGGNVSFSRI--ISEAFPGIKCTVL--DL-PHAVANLPEADNLKYIAGDMLR-FIPPANAFLF-----KILKK 218 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~--l~~~~P~~~~~~~--Dl-p~~~~~a~~~~ri~~~~~D~~~-~~p~~D~i~~-----~iL~~ 218 (301)
.++||=||||.=..-.. |++. +.+++++ ++ ++..+.+ ...+|+++..++.. .+..+++|+. ++=++
T Consensus 12 ~~~vlvvGgG~vA~rk~~~ll~~--ga~v~visp~~~~~~~~l~-~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~~n~~ 88 (457)
T PRK10637 12 DRDCLLVGGGDVAERKARLLLDA--GARLTVNALAFIPQFTAWA-DAGMLTLVEGPFDESLLDTCWLAIAATDDDAVNQR 88 (457)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCCCHHHHHHH-hCCCEEEEeCCCChHHhCCCEEEEECCCCHHHhHH
Confidence 58999999998765533 4444 4455555 44 4443332 36789999988865 5666777766 55556
Q ss_pred HHHhccc
Q 043533 219 RREAIAS 225 (301)
Q Consensus 219 ~~~aL~p 225 (301)
+++..+.
T Consensus 89 i~~~a~~ 95 (457)
T PRK10637 89 VSEAAEA 95 (457)
T ss_pred HHHHHHH
Confidence 6666555
No 396
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=44.93 E-value=32 Score=31.36 Aligned_cols=87 Identities=18% Similarity=0.164 Sum_probs=46.7
Q ss_pred CCCeEEEecCCc-cHHHHHHHHHCCCC-eEEEeech-HH-----Hh--cCCC-CCCeEEEeCCCCCCCCcchhHHH----
Q 043533 149 GLGSLVDVGGGN-VSFSRIISEAFPGI-KCTVLDLP-HA-----VA--NLPE-ADNLKYIAGDMLRFIPPANAFLF---- 213 (301)
Q Consensus 149 ~~~~vlDvGgG~-G~~~~~l~~~~P~~-~~~~~Dlp-~~-----~~--~a~~-~~ri~~~~~D~~~~~p~~D~i~~---- 213 (301)
.+.+|.=||+|. |......+...+-. ++.++|.. +. .+ ++.. ..++.+..+|+ +.+.++|+|++
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~-~~~~~adivIitag~ 83 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDY-SDCKDADLVVITAGA 83 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCH-HHhCCCCEEEEecCC
Confidence 346888999876 55444444444433 68999972 21 11 1111 13455554443 23444555554
Q ss_pred ----------------HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 ----------------KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 ----------------~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
.+++++...++...|.+.++++.
T Consensus 84 ~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 84 PQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 77777666664212267777765
No 397
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=44.91 E-value=21 Score=29.52 Aligned_cols=44 Identities=16% Similarity=0.030 Sum_probs=34.2
Q ss_pred EecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEe
Q 043533 155 DVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIA 198 (301)
Q Consensus 155 DvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~ri~~~~ 198 (301)
=+-||||.=..-.++++|+++...+--+.....++..++.+++.
T Consensus 62 IliCGTGiG~siaANKv~GIRAA~~~d~~sA~~aR~hNnaNVL~ 105 (171)
T PRK08622 62 VCICGTGVGISNAVNKVPGIRSALVRDMTSALYAKEELNANVIG 105 (171)
T ss_pred EEEcCCcHHHHHHHhcCCCeEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 34689999888999999999987777777777777755555443
No 398
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=44.57 E-value=32 Score=27.14 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=18.8
Q ss_pred EecCCcc--HHHHHHH--HHCCCCeEEEeec-hHH
Q 043533 155 DVGGGNV--SFSRIIS--EAFPGIKCTVLDL-PHA 184 (301)
Q Consensus 155 DvGgG~G--~~~~~l~--~~~P~~~~~~~Dl-p~~ 184 (301)
|||++.| .....+. ...|+.+++.+|- |..
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~ 35 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSN 35 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHH
Confidence 8999999 6555554 4678899999998 654
No 399
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=44.37 E-value=42 Score=28.35 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=41.3
Q ss_pred CCeEEEecCCccHHH--HHHHHHCCCCeEEEeec---hHHHhcCCCCCCeEEEeCCCCC-CCCcchhHHH-----HHHHH
Q 043533 150 LGSLVDVGGGNVSFS--RIISEAFPGIKCTVLDL---PHAVANLPEADNLKYIAGDMLR-FIPPANAFLF-----KILKK 218 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~--~~l~~~~P~~~~~~~Dl---p~~~~~a~~~~ri~~~~~D~~~-~~p~~D~i~~-----~iL~~ 218 (301)
.++||=||||.=... ..|++. +.++++++. ++..+.+. ..++.+....+.. .+..+|+++. .+=..
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~--ga~V~VIs~~~~~~l~~l~~-~~~i~~~~~~~~~~~l~~adlViaaT~d~elN~~ 86 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKY--GAHIVVISPELTENLVKLVE-EGKIRWKQKEFEPSDIVDAFLVIAATNDPRVNEQ 86 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCeEEEEcCCCCHHHHHHHh-CCCEEEEecCCChhhcCCceEEEEcCCCHHHHHH
Confidence 578999998754432 234444 356777753 23333222 3568887766654 4666888776 33344
Q ss_pred HHHhccc
Q 043533 219 RREAIAS 225 (301)
Q Consensus 219 ~~~aL~p 225 (301)
+++..+.
T Consensus 87 i~~~a~~ 93 (202)
T PRK06718 87 VKEDLPE 93 (202)
T ss_pred HHHHHHh
Confidence 4444444
No 400
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=44.27 E-value=34 Score=32.16 Aligned_cols=53 Identities=15% Similarity=0.100 Sum_probs=38.6
Q ss_pred CeEEEecCC-ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEeCCCCC
Q 043533 151 GSLVDVGGG-NVSFSRIISEAFPGIKCTVLDL-PHAVANLPE--ADNLKYIAGDMLR 203 (301)
Q Consensus 151 ~~vlDvGgG-~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~--~~ri~~~~~D~~~ 203 (301)
.+||=|||| .|......+.++-+-++++.|. ++-++.+.. ..++++...|..+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d 58 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAAD 58 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccC
Confidence 467888874 3555555555565689999999 677777764 4589999999876
No 401
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=44.16 E-value=37 Score=30.23 Aligned_cols=27 Identities=7% Similarity=-0.071 Sum_probs=20.5
Q ss_pred cCCHHHHHHHHHhCCCceeEEEecCCc
Q 043533 267 ERTESEWAKLFFDAVFSHYKITPIFGM 293 (301)
Q Consensus 267 ~rt~~e~~~ll~~aGf~~~~~~~~~~~ 293 (301)
+-+.+..+.+++..|-+.+.+...+++
T Consensus 160 ~~~~~~~~~~l~~lg~~~v~v~d~~Gf 186 (288)
T PRK09260 160 DETVQVAKEVAEQMGKETVVVNEFPGF 186 (288)
T ss_pred HHHHHHHHHHHHHcCCeEEEecCcccH
Confidence 345567788999999998888776664
No 402
>PRK11524 putative methyltransferase; Provisional
Probab=43.94 E-value=46 Score=29.71 Aligned_cols=41 Identities=10% Similarity=0.075 Sum_probs=33.6
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE 190 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~ 190 (301)
..+..|||-=||+|.++.+..+. +-+++++|+ ++-++.|.+
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~ 248 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLR 248 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHH
Confidence 45689999999999999988877 557999999 777776653
No 403
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=43.66 E-value=8.2 Score=36.49 Aligned_cols=53 Identities=19% Similarity=0.181 Sum_probs=42.9
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEeCCC
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE--------ADNLKYIAGDM 201 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~--------~~ri~~~~~D~ 201 (301)
+..+..|+|+=||.|-+++-++++. ++++..|+ |++++-.+. ..+|+.+..|.
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK~--crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda 308 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKKG--CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDA 308 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhcC--cEEEecCCCHHHHHHHHHhccccccchhheeeecccH
Confidence 5667899999999999999999885 99999999 888775543 34577777664
No 404
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=43.57 E-value=29 Score=32.98 Aligned_cols=81 Identities=16% Similarity=0.160 Sum_probs=50.2
Q ss_pred CCCeEEEecCCcc-HHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCCcchhHHH-----HHHHHH-H
Q 043533 149 GLGSLVDVGGGNV-SFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLRFIPPANAFLF-----KILKKR-R 220 (301)
Q Consensus 149 ~~~~vlDvGgG~G-~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~~~p~~D~i~~-----~iL~~~-~ 220 (301)
...+|+=+|+|.= ......++.. +.+++++|. |.-...|.. ..+..+ +..+....+|+++. .++... .
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~-~G~~~~--~~~e~v~~aDVVI~atG~~~~i~~~~l 276 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAM-EGYEVM--TMEEAVKEGDIFVTTTGNKDIITGEHF 276 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHh-cCCEEc--cHHHHHcCCCEEEECCCCHHHHHHHHH
Confidence 4689999999864 4444455554 568999998 555555553 222222 11112333677765 667664 8
Q ss_pred HhcccCCCCcEEEEEe
Q 043533 221 EAIASNGERGKVIIID 236 (301)
Q Consensus 221 ~aL~p~~~gg~l~i~e 236 (301)
+.|++ ||.++.+-
T Consensus 277 ~~mk~---GgilvnvG 289 (413)
T cd00401 277 EQMKD---GAIVCNIG 289 (413)
T ss_pred hcCCC---CcEEEEeC
Confidence 89999 78776665
No 405
>PRK08507 prephenate dehydrogenase; Validated
Probab=43.44 E-value=19 Score=31.92 Aligned_cols=71 Identities=17% Similarity=0.065 Sum_probs=38.4
Q ss_pred eEEEecCCc--cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCCcchhHHH--------HHHHHHH
Q 043533 152 SLVDVGGGN--VSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLRFIPPANAFLF--------KILKKRR 220 (301)
Q Consensus 152 ~vlDvGgG~--G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~~~p~~D~i~~--------~iL~~~~ 220 (301)
+|.=||+|. |.++..|.+.....+++++|. ++.++.+.+..-+... .+. ++...+|+|++ .+++++.
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~-~~~-~~~~~aD~Vilavp~~~~~~~~~~l~ 79 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEI-VSF-EELKKCDVIFLAIPVDAIIEILPKLL 79 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCccc-CCH-HHHhcCCEEEEeCcHHHHHHHHHHHh
Confidence 355577664 445555665544557888998 5555544432211111 121 11223677776 6667777
Q ss_pred Hhccc
Q 043533 221 EAIAS 225 (301)
Q Consensus 221 ~aL~p 225 (301)
. +++
T Consensus 80 ~-l~~ 83 (275)
T PRK08507 80 D-IKE 83 (275)
T ss_pred c-cCC
Confidence 6 777
No 406
>PTZ00117 malate dehydrogenase; Provisional
Probab=42.85 E-value=44 Score=30.47 Aligned_cols=32 Identities=13% Similarity=0.051 Sum_probs=22.8
Q ss_pred CCeEEEecCCc-cHHHHHHHHHCCCCeEEEeec
Q 043533 150 LGSLVDVGGGN-VSFSRIISEAFPGIKCTVLDL 181 (301)
Q Consensus 150 ~~~vlDvGgG~-G~~~~~l~~~~P~~~~~~~Dl 181 (301)
..+|.=||+|+ |.....++....-..++++|.
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di 37 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDV 37 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEEC
Confidence 46889999988 666555555543257889998
No 407
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=42.68 E-value=4.9 Score=27.61 Aligned_cols=28 Identities=18% Similarity=0.412 Sum_probs=21.2
Q ss_pred HHhHHhc-CCCCCHHHHHHhcCCCCCCce
Q 043533 18 QLYKLIH-GRAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 18 ~lF~~L~-~~p~t~~elA~~~~~~~~~l~ 45 (301)
.|-+.|. .+.+|..|||.++++++..++
T Consensus 4 ~i~~~l~~~~~~S~~eLa~~~~~s~~~ve 32 (69)
T PF09012_consen 4 EIRDYLRERGRVSLAELAREFGISPEAVE 32 (69)
T ss_dssp HHHHHHHHS-SEEHHHHHHHTT--HHHHH
T ss_pred HHHHHHHHcCCcCHHHHHHHHCcCHHHHH
Confidence 4567775 478999999999999999888
No 408
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=42.55 E-value=57 Score=33.32 Aligned_cols=138 Identities=11% Similarity=0.095 Sum_probs=74.8
Q ss_pred CCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-----------------------CCCeEEEeCCCCCC
Q 043533 150 LGSLVDVGGGNVSFSRIISEA-FPGIKCTVLDL-PHAVANLPE-----------------------ADNLKYIAGDMLRF 204 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~-~P~~~~~~~Dl-p~~~~~a~~-----------------------~~ri~~~~~D~~~~ 204 (301)
.++|.-||+|+=...++..-. .-+..++++|. ++.++.+.. ..||++.. |+ +.
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~-~~-~~ 386 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTT-DY-RG 386 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeC-Ch-HH
Confidence 468999998873333333323 45789999998 665555421 24666552 43 33
Q ss_pred CCcchhHHH----------HHHHHHHHhcccCCCCcEEEEEee-eeCCCccchhhhhhhhhhchhh--------ccc-cC
Q 043533 205 IPPANAFLF----------KILKKRREAIASNGERGKVIIIDI-VINAEEEEHELTETKFLFDIVM--------SVN-AT 264 (301)
Q Consensus 205 ~p~~D~i~~----------~iL~~~~~aL~p~~~gg~l~i~e~-~~~~~~~~~~~~~~~~~~d~~~--------~~~-~~ 264 (301)
+.++|+|+= ++++++-+.++| +.++...+ .++-..-........++..++. ++. ..
T Consensus 387 ~~~aDlViEav~E~~~~K~~v~~~le~~~~~----~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~ 462 (708)
T PRK11154 387 FKHADVVIEAVFEDLALKQQMVAEVEQNCAP----HTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIP 462 (708)
T ss_pred hccCCEEeecccccHHHHHHHHHHHHhhCCC----CcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEEC
Confidence 444676663 899999999999 44554332 1111000000000001111111 111 11
Q ss_pred Cc---cCCHHHHHHHHHhCCCceeEEEecCCc
Q 043533 265 GK---ERTESEWAKLFFDAVFSHYKITPIFGM 293 (301)
Q Consensus 265 g~---~rt~~e~~~ll~~aGf~~~~~~~~~~~ 293 (301)
|. +-+.+...+++++.|...+.+...+|+
T Consensus 463 g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~pGf 494 (708)
T PRK11154 463 HAKTSAETIATTVALAKKQGKTPIVVRDGAGF 494 (708)
T ss_pred CCCCCHHHHHHHHHHHHHcCCceEEEeccCcH
Confidence 11 224455677889999999988877764
No 409
>COG4189 Predicted transcriptional regulator [Transcription]
Probab=42.47 E-value=26 Score=30.48 Aligned_cols=31 Identities=16% Similarity=0.405 Sum_probs=27.2
Q ss_pred HHHHHhHHhcC-CCCCHHHHHHhcCCCCCCce
Q 043533 15 GQAQLYKLIHG-RAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 15 ~~l~lF~~L~~-~p~t~~elA~~~~~~~~~l~ 45 (301)
+|+.+.++|.. +|+.+.|||+++|++..-+.
T Consensus 24 vRv~Il~lL~~k~plNvneiAe~lgLpqst~s 55 (308)
T COG4189 24 VRVAILQLLHRKGPLNVNEIAEALGLPQSTMS 55 (308)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHhCCchhhhh
Confidence 68889999975 89999999999999887665
No 410
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=42.34 E-value=42 Score=34.33 Aligned_cols=139 Identities=9% Similarity=0.066 Sum_probs=77.1
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------------------CCCeEEEeCCCCCC
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----------------------ADNLKYIAGDMLRF 204 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----------------------~~ri~~~~~D~~~~ 204 (301)
..++|.-||+|+=.-.++.+-..-+.+++++|. ++.++.+.+ ..||++.. |+ +.
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~-~~ 389 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTL-SY-AG 389 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeC-CH-HH
Confidence 346789999886555555444445889999998 666554431 24565542 33 23
Q ss_pred CCcchhHHH----------HHHHHHHHhcccCCCCcEEEEEee-eeCCCccchhhhhhhhhhchhh--------ccc-cC
Q 043533 205 IPPANAFLF----------KILKKRREAIASNGERGKVIIIDI-VINAEEEEHELTETKFLFDIVM--------SVN-AT 264 (301)
Q Consensus 205 ~p~~D~i~~----------~iL~~~~~aL~p~~~gg~l~i~e~-~~~~~~~~~~~~~~~~~~d~~~--------~~~-~~ 264 (301)
+.++|+|+= ++++++-+.++| + .++...+ .++-..-........++..++. ++. ..
T Consensus 390 ~~~aDlViEav~E~l~~K~~vf~~l~~~~~~---~-~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~ 465 (714)
T TIGR02437 390 FDNVDIVVEAVVENPKVKAAVLAEVEQHVRE---D-AILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIR 465 (714)
T ss_pred hcCCCEEEEcCcccHHHHHHHHHHHHhhCCC---C-cEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecC
Confidence 444676663 999999999999 3 4444332 1111000000000011122211 111 11
Q ss_pred Cc---cCCHHHHHHHHHhCCCceeEEEecCCc
Q 043533 265 GK---ERTESEWAKLFFDAVFSHYKITPIFGM 293 (301)
Q Consensus 265 g~---~rt~~e~~~ll~~aGf~~~~~~~~~~~ 293 (301)
|. +.+.+...+++++.|...+.+...+|+
T Consensus 466 g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGf 497 (714)
T TIGR02437 466 GEKSSDETIATVVAYASKMGKTPIVVNDCPGF 497 (714)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeCCcccc
Confidence 22 234556678889999999998877774
No 411
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=42.29 E-value=42 Score=30.02 Aligned_cols=137 Identities=12% Similarity=0.079 Sum_probs=70.3
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------------------CCCeEEEeCCCCCCCC
Q 043533 151 GSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----------------------ADNLKYIAGDMLRFIP 206 (301)
Q Consensus 151 ~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----------------------~~ri~~~~~D~~~~~p 206 (301)
.+|.=||+|+=...++..-..-+.+++++|. |+.++.+.. ..|+++. .|+ +...
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~-~~~-~~~~ 83 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFT-TDL-GDFA 83 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEee-CCH-HHhC
Confidence 4788888874333333222334789999999 776655321 1345443 344 3344
Q ss_pred cchhHHH----------HHHHHHHHhc-ccCCCCcEEEEEee-eeCCCccchhhhhhhhhhchhhc--------c----c
Q 043533 207 PANAFLF----------KILKKRREAI-ASNGERGKVIIIDI-VINAEEEEHELTETKFLFDIVMS--------V----N 262 (301)
Q Consensus 207 ~~D~i~~----------~iL~~~~~aL-~p~~~gg~l~i~e~-~~~~~~~~~~~~~~~~~~d~~~~--------~----~ 262 (301)
++|+|+- .+++.+-+.+ +| +.+++... .++...-........++..++++ + .
T Consensus 84 ~~d~ViEav~E~~~~K~~l~~~l~~~~~~~----~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~ 159 (286)
T PRK07819 84 DRQLVIEAVVEDEAVKTEIFAELDKVVTDP----DAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPT 159 (286)
T ss_pred CCCEEEEecccCHHHHHHHHHHHHHhhCCC----CcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCC
Confidence 4677664 7788778777 66 45555433 22211000000000011111111 0 0
Q ss_pred cCCccCCHHHHHHHHHh-CCCceeEEEecCCc
Q 043533 263 ATGKERTESEWAKLFFD-AVFSHYKITPIFGM 293 (301)
Q Consensus 263 ~~g~~rt~~e~~~ll~~-aGf~~~~~~~~~~~ 293 (301)
.++.+.+.+....++.+ .|.+.+.+...+|+
T Consensus 160 ~~T~~~~~~~~~~~~~~~lgk~pv~v~d~pGf 191 (286)
T PRK07819 160 LVTSEATVARAEEFASDVLGKQVVRAQDRSGF 191 (286)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCceEecCCCCh
Confidence 12223355666778774 89998888777764
No 412
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=42.23 E-value=33 Score=31.53 Aligned_cols=34 Identities=12% Similarity=0.128 Sum_probs=27.1
Q ss_pred cCCCeEEEecCCccHHHHH--HHHHCCCCeEEEeec
Q 043533 148 EGLGSLVDVGGGNVSFSRI--ISEAFPGIKCTVLDL 181 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~--l~~~~P~~~~~~~Dl 181 (301)
+..-.||-||||+|.++.+ +.++.|.-++.++|-
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep 72 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEP 72 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecc
Confidence 4456899999999986654 778888888877775
No 413
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=41.75 E-value=9.7 Score=25.08 Aligned_cols=28 Identities=14% Similarity=0.354 Sum_probs=23.6
Q ss_pred HHhHHhc-CCCCCHHHHHHhcCCCCCCce
Q 043533 18 QLYKLIH-GRAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 18 ~lF~~L~-~~p~t~~elA~~~~~~~~~l~ 45 (301)
.|.+.|. .+.+|++|||+.+++++.-++
T Consensus 4 ~Il~~l~~~~~~s~~ela~~~~VS~~TiR 32 (57)
T PF08220_consen 4 QILELLKEKGKVSVKELAEEFGVSEMTIR 32 (57)
T ss_pred HHHHHHHHcCCEEHHHHHHHHCcCHHHHH
Confidence 4567776 488999999999999998877
No 414
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=41.61 E-value=28 Score=32.55 Aligned_cols=45 Identities=16% Similarity=0.209 Sum_probs=34.2
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccH----HHHHHHHHC---CCCeEEEeech
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVS----FSRIISEAF---PGIKCTVLDLP 182 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~----~~~~l~~~~---P~~~~~~~Dlp 182 (301)
...|+ +.+. -...-.|+|+|-|.|. +...|+.+. |.+++|+++.|
T Consensus 99 NqaIl-eA~~--g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~ 150 (374)
T PF03514_consen 99 NQAIL-EAFE--GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPP 150 (374)
T ss_pred hHHHH-HHhc--cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCC
Confidence 45677 7776 4456789999999997 555666653 78899999984
No 415
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=41.45 E-value=16 Score=30.31 Aligned_cols=71 Identities=15% Similarity=0.236 Sum_probs=41.7
Q ss_pred EEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------------------CCCeEEEeCCCCCCCCcc
Q 043533 153 LVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----------------------ADNLKYIAGDMLRFIPPA 208 (301)
Q Consensus 153 vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----------------------~~ri~~~~~D~~~~~p~~ 208 (301)
|.=||+|+=..+++..-..-+.+++++|. ++.++.+.+ ..|+++. .|+.+-. ++
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~dl~~~~-~a 79 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT-TDLEEAV-DA 79 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE-SSGGGGC-TE
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc-cCHHHHh-hh
Confidence 55677765444444333334889999998 666555432 2467754 3553222 56
Q ss_pred hhHHH----------HHHHHHHHhccc
Q 043533 209 NAFLF----------KILKKRREAIAS 225 (301)
Q Consensus 209 D~i~~----------~iL~~~~~aL~p 225 (301)
|+|+= .+++++.+.++|
T Consensus 80 dlViEai~E~l~~K~~~~~~l~~~~~~ 106 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFAELDEICPP 106 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHHHHHCCS-T
T ss_pred heehhhccccHHHHHHHHHHHHHHhCC
Confidence 66552 899999999988
No 416
>PRK11524 putative methyltransferase; Provisional
Probab=41.12 E-value=16 Score=32.66 Aligned_cols=19 Identities=11% Similarity=0.368 Sum_probs=17.2
Q ss_pred HHHHHHHHhcccCCCCcEEEEE
Q 043533 214 KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 214 ~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
..|++++++|+| ||.++|+
T Consensus 61 ~~l~~~~rvLK~---~G~i~i~ 79 (284)
T PRK11524 61 EWIDECHRVLKK---QGTMYIM 79 (284)
T ss_pred HHHHHHHHHhCC---CcEEEEE
Confidence 899999999999 8988875
No 417
>PRK03902 manganese transport transcriptional regulator; Provisional
Probab=40.68 E-value=25 Score=27.79 Aligned_cols=44 Identities=25% Similarity=0.366 Sum_probs=32.1
Q ss_pred HhHHhc-CCCCCHHHHHHhcCCCCCCce--e---------e-cCCCeEEcChhcchh
Q 043533 19 LYKLIH-GRAITLSELVSALDIQPTKTT--V---------N-GQEEAYGLTAASTLL 62 (301)
Q Consensus 19 lF~~L~-~~p~t~~elA~~~~~~~~~l~--v---------e-~~~~~y~~t~~s~~L 62 (301)
|+.++. .++.++++||+.+++++..+. + . ...+.|.+|+.+..+
T Consensus 13 I~~l~~~~~~~~~~ela~~l~vs~~svs~~l~~L~~~Gli~~~~~~~i~LT~~G~~~ 69 (142)
T PRK03902 13 IYLLIEEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTPKGKKI 69 (142)
T ss_pred HHHHHhcCCCcCHHHHHHHhCCChhHHHHHHHHHHHCCCEEEecCceEEECHHHHHH
Confidence 344454 478999999999999888776 2 2 345678888888643
No 418
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=40.40 E-value=78 Score=30.12 Aligned_cols=88 Identities=14% Similarity=0.042 Sum_probs=54.1
Q ss_pred ccCCCeEEEecCCccHHHHHHHHHCCC-CeEEEeec-hH----HHhcCCC--CCCeEEEeCCCCC-C---CCc-chhHHH
Q 043533 147 FEGLGSLVDVGGGNVSFSRIISEAFPG-IKCTVLDL-PH----AVANLPE--ADNLKYIAGDMLR-F---IPP-ANAFLF 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG~G~~~~~l~~~~P~-~~~~~~Dl-p~----~~~~a~~--~~ri~~~~~D~~~-~---~p~-~D~i~~ 213 (301)
.+.+.+|||+.+-.|.=+..++..--+ -.++..|. .. +...+.. -.+......|..+ | +|. ||=|++
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDRVLL 318 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDRVLL 318 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCcccceeee
Confidence 456789999999888866666665432 24555674 22 2222222 2444455566643 2 443 776665
Q ss_pred ---------------------------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 214 ---------------------------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 ---------------------------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
++|-++.+.+++ ||.|+....
T Consensus 319 DAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~---GGvLVYSTC 372 (460)
T KOG1122|consen 319 DAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKA---GGVLVYSTC 372 (460)
T ss_pred cCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccC---CcEEEEEee
Confidence 899999999999 675554443
No 419
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=39.65 E-value=22 Score=28.36 Aligned_cols=40 Identities=10% Similarity=0.055 Sum_probs=30.6
Q ss_pred CCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEE
Q 043533 158 GGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYI 197 (301)
Q Consensus 158 gG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~ri~~~ 197 (301)
||||.=..-.++++|+++...+--+.....++.+++.+++
T Consensus 63 CGtGiG~siaANK~~GIRAA~~~d~~~A~~ar~hNnaNVL 102 (141)
T TIGR01118 63 DAYGAGSFMVATKIKGMIAAEVSDERSAYMTRGHNNARMI 102 (141)
T ss_pred cCCCHhHhhhhhcCCCeEEEEECCHHHHHHHHHHcCCcEE
Confidence 7888888888999999998877777777777765544443
No 420
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=39.34 E-value=50 Score=26.78 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHhHHhc-CCCCCHHHHHHhcCCCCCCce
Q 043533 9 AKELFQGQAQLYKLIH-GRAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 9 ~~~~~~~~l~lF~~L~-~~p~t~~elA~~~~~~~~~l~ 45 (301)
+.+|=.....|...|. ++..|..|||+++|+++..+.
T Consensus 9 ~~~lD~~D~~IL~~Lq~d~R~s~~eiA~~lglS~~tv~ 46 (164)
T PRK11169 9 GKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCL 46 (164)
T ss_pred hhhHHHHHHHHHHHhccCCCCCHHHHHHHHCcCHHHHH
Confidence 4445567888899996 589999999999999999887
No 421
>PF00440 TetR_N: Bacterial regulatory proteins, tetR family; InterPro: IPR001647 This entry represents a DNA-binding domain with a helix-turn-helix (HTH) structure that is found in several bacterial and archaeal transcriptional regulators, such as TetR, the tetracycline resistance repressor. Numerous other transcriptional regulatory proteins also contain HTH-type DNA-binding domains, and can be grouped into subfamiles based on sequence similarity. The domain represented by this entry is found in a subfamily of proteins that includes the transcriptional regulators TetR, TetC, AcrR, BetI, Bm3R1, EnvR, QacR, MtrR, TcmR, Ttk, YbiH, and YhgD [, , ]. Many of these proteins function as repressors that control the level of susceptibility to hydrophobic antibiotics and detergents. They all have similar molecular weights, ranging from 21 to 25 kDa. The helix-turn-helix motif is located in the initial third of the protein. The 3D structure of the homodimeric TetR protein complexed with 7-chloro-tetracycline-magnesium has been determined to 2.1 A resolution []. TetR folds into ten alpha-helices with connecting turns and loops. The three N-terminal alpha-helices of the repressor form the DNA-binding domain: this structural motif encompasses an HTH fold with an inverse orientation compared with that of other DNA-binding proteins.; GO: 0003677 DNA binding; PDB: 3NPI_B 3IUV_A 3CCY_A 2JK3_A 2FX0_A 2JJ7_A 2WV1_B 3BTI_D 3BR6_E 3BR5_A ....
Probab=39.24 E-value=59 Score=20.11 Aligned_cols=31 Identities=6% Similarity=0.199 Sum_probs=23.6
Q ss_pred HHHHHHHhHHhcCCCCCHHHHHHhcCCCCCC
Q 043533 13 FQGQAQLYKLIHGRAITLSELVSALDIQPTK 43 (301)
Q Consensus 13 ~~~~l~lF~~L~~~p~t~~elA~~~~~~~~~ 43 (301)
+.+-+.+|..-.=...|+.+||+++|++...
T Consensus 2 l~aa~~l~~~~G~~~~s~~~Ia~~~gvs~~~ 32 (47)
T PF00440_consen 2 LEAALELFAEKGYEAVSIRDIARRAGVSKGS 32 (47)
T ss_dssp HHHHHHHHHHHHTTTSSHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHhCHHhCCHHHHHHHHccchhh
Confidence 4555667776665689999999999987643
No 422
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=39.07 E-value=50 Score=21.33 Aligned_cols=31 Identities=3% Similarity=0.213 Sum_probs=22.5
Q ss_pred HHHHHHhHHhcCCCCCHHHHHHhcCCCCCCce
Q 043533 14 QGQAQLYKLIHGRAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 14 ~~~l~lF~~L~~~p~t~~elA~~~~~~~~~l~ 45 (301)
..++.+-+.+.+|+ +..+||...|++..-+.
T Consensus 10 ~eK~~iI~~~e~g~-s~~~ia~~fgv~~sTv~ 40 (53)
T PF04218_consen 10 EEKLEIIKRLEEGE-SKRDIAREFGVSRSTVS 40 (53)
T ss_dssp HHHHHHHHHHHCTT--HHHHHHHHT--CCHHH
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHhCCCHHHHH
Confidence 35777888888877 99999999999876554
No 423
>PRK13699 putative methylase; Provisional
Probab=38.98 E-value=18 Score=31.21 Aligned_cols=19 Identities=0% Similarity=0.013 Sum_probs=16.1
Q ss_pred HHHHHHHHhcccCCCCcEEEEE
Q 043533 214 KILKKRREAIASNGERGKVIII 235 (301)
Q Consensus 214 ~iL~~~~~aL~p~~~gg~l~i~ 235 (301)
..+++++++|+| ||.++++
T Consensus 53 ~~l~E~~RVLKp---gg~l~if 71 (227)
T PRK13699 53 PACNEMYRVLKK---DALMVSF 71 (227)
T ss_pred HHHHHHHHHcCC---CCEEEEE
Confidence 889999999999 7877653
No 424
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.96 E-value=36 Score=30.93 Aligned_cols=58 Identities=22% Similarity=0.224 Sum_probs=35.5
Q ss_pred EEEecCCccHHHHHHHHHCCCCeE-EEeec-hHHHhcCCC-CCCeEEEeCCCCC-C---CCcchhHHH
Q 043533 153 LVDVGGGNVSFSRIISEAFPGIKC-TVLDL-PHAVANLPE-ADNLKYIAGDMLR-F---IPPANAFLF 213 (301)
Q Consensus 153 vlDvGgG~G~~~~~l~~~~P~~~~-~~~Dl-p~~~~~a~~-~~ri~~~~~D~~~-~---~p~~D~i~~ 213 (301)
|+|+=||.|.+...+.++. .++ ..+|+ +..++.-+. .+. .++.+|..+ . +|+.|+++.
T Consensus 1 vidLF~G~GG~~~Gl~~aG--~~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~~~~~~dvl~g 65 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG--FKCVFASEIDKYAQKTYEANFGN-KVPFGDITKISPSDIPDFDILLG 65 (315)
T ss_pred CEEEecCccHHHHHHHHcC--CeEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhhhCCCcCEEEe
Confidence 5899999999999998774 554 45887 554443332 112 334456544 1 344666554
No 425
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=38.92 E-value=25 Score=27.90 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhHHhcCCC---CCHHHHHHhcCCCCCCce
Q 043533 10 KELFQGQAQLYKLIHGRA---ITLSELVSALDIQPTKTT 45 (301)
Q Consensus 10 ~~~~~~~l~lF~~L~~~p---~t~~elA~~~~~~~~~l~ 45 (301)
++.+..-..+.+.|.+.| .|+.|||+++|+++..+.
T Consensus 26 ~~~e~~f~kV~~yLr~~p~~~ati~eV~e~tgVs~~~I~ 64 (137)
T TIGR03826 26 EEEEREFEKVYKFLRKHENRQATVSEIVEETGVSEKLIL 64 (137)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCcCHHHHH
Confidence 455666677888886533 699999999999998876
No 426
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=38.89 E-value=35 Score=25.83 Aligned_cols=50 Identities=16% Similarity=0.190 Sum_probs=35.6
Q ss_pred HHHHHhHHhc-CCCCCHHHHHHhcCCCCCCce-----------e--e--cCC---CeEEcChhcchhhc
Q 043533 15 GQAQLYKLIH-GRAITLSELVSALDIQPTKTT-----------V--N--GQE---EAYGLTAASTLLIK 64 (301)
Q Consensus 15 ~~l~lF~~L~-~~p~t~~elA~~~~~~~~~l~-----------v--e--~~~---~~y~~t~~s~~L~~ 64 (301)
.+..+...|. ++++|..+||+.++++...+. | + ..+ -.|.+|+.++.+..
T Consensus 29 ~q~~iL~~l~~~~~~t~~ela~~~~~~~~tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~G~~~~~ 97 (118)
T TIGR02337 29 QQWRILRILAEQGSMEFTQLANQACILRPSLTGILARLERDGLVTRLKASNDQRRVYISLTPKGQALYA 97 (118)
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence 3556667675 488999999999999888776 2 1 112 35889998875443
No 427
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=38.86 E-value=22 Score=32.44 Aligned_cols=85 Identities=9% Similarity=0.035 Sum_probs=51.1
Q ss_pred CCCeEEEecC-CccHHHHHHHHHCCCC-eEEEeec-hHHHhcCCC-CCCeEEE--eCCCCC---CCCcchhHHH-----H
Q 043533 149 GLGSLVDVGG-GNVSFSRIISEAFPGI-KCTVLDL-PHAVANLPE-ADNLKYI--AGDMLR---FIPPANAFLF-----K 214 (301)
Q Consensus 149 ~~~~vlDvGg-G~G~~~~~l~~~~P~~-~~~~~Dl-p~~~~~a~~-~~ri~~~--~~D~~~---~~p~~D~i~~-----~ 214 (301)
...+|+-.|+ +.|.++..+++.. +. +++++|. ++-.+.+++ +....+- ..|+.+ ....+|+++- .
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~-G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~~ 247 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTL-GAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHPS 247 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCHH
Confidence 3567776765 3566777788776 44 6888887 666665554 1111111 111111 1112566554 5
Q ss_pred HHHHHHHhcccCCCCcEEEEEee
Q 043533 215 ILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 215 iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
.++.+.+.|++ ||+++++..
T Consensus 248 ~~~~~~~~l~~---~G~iv~~G~ 267 (343)
T PRK09880 248 SINTCLEVTRA---KGVMVQVGM 267 (343)
T ss_pred HHHHHHHHhhc---CCEEEEEcc
Confidence 78889999999 899998864
No 428
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=38.70 E-value=22 Score=27.82 Aligned_cols=61 Identities=15% Similarity=0.199 Sum_probs=32.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCCC----cchhHHH
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLRFIP----PANAFLF 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~ri~~~~~D~~~~~p----~~D~i~~ 213 (301)
....++++||=|.=.-....++.+ +..+++.|..+. .+ ..++.++.-|.|+|-. .+|+|.+
T Consensus 12 ~~~~kiVEVGiG~~~~vA~~L~~~-G~dV~~tDi~~~--~a--~~g~~~v~DDif~P~l~iY~~a~lIYS 76 (127)
T PF03686_consen 12 NNYGKIVEVGIGFNPEVAKKLKER-GFDVIATDINPR--KA--PEGVNFVVDDIFNPNLEIYEGADLIYS 76 (127)
T ss_dssp S-SSEEEEET-TT--HHHHHHHHH-S-EEEEE-SS-S--------STTEE---SSS--HHHHTTEEEEEE
T ss_pred CCCCcEEEECcCCCHHHHHHHHHc-CCcEEEEECccc--cc--ccCcceeeecccCCCHHHhcCCcEEEE
Confidence 345699999977665444444443 388999999433 22 3678899999998633 2687776
No 429
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=38.60 E-value=17 Score=24.32 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=19.8
Q ss_pred HHHhHHhc--CCCCCHHHHHHhcCCCCCCce
Q 043533 17 AQLYKLIH--GRAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 17 l~lF~~L~--~~p~t~~elA~~~~~~~~~l~ 45 (301)
.-+-..|. +++.|..+||+.++++...+.
T Consensus 6 ~~vL~~l~~~~~~~t~~~l~~~~~~~~~~vs 36 (68)
T PF13463_consen 6 WQVLRALAHSDGPMTQSDLAERLGISKSTVS 36 (68)
T ss_dssp HHHHHHHT--TS-BEHHHHHHHTT--HHHHH
T ss_pred HHHHHHHHccCCCcCHHHHHHHHCcCHHHHH
Confidence 33444555 689999999999999987766
No 430
>PF10017 Methyltransf_33: Histidine-specific methyltransferase, SAM-dependent; InterPro: IPR019257 This domain is found in methyltransferases and various hypothetical proteins.
Probab=38.52 E-value=59 Score=25.21 Aligned_cols=28 Identities=14% Similarity=-0.120 Sum_probs=24.1
Q ss_pred CccCCHHHHHHHHHhCCCceeEEEecCC
Q 043533 265 GKERTESEWAKLFFDAVFSHYKITPIFG 292 (301)
Q Consensus 265 g~~rt~~e~~~ll~~aGf~~~~~~~~~~ 292 (301)
+..++.+++..+++++||+++..+.-+.
T Consensus 93 S~Ky~~~~~~~l~~~aGl~~~~~w~d~~ 120 (127)
T PF10017_consen 93 SYKYSPEEFEALAEQAGLEVEKRWTDPK 120 (127)
T ss_pred eeCcCHHHHHHHHHHCCCeeEEEEECCC
Confidence 3457999999999999999999887654
No 431
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=38.22 E-value=33 Score=25.53 Aligned_cols=45 Identities=33% Similarity=0.471 Sum_probs=29.9
Q ss_pred CCccHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC
Q 043533 158 GGNVSFSRIISEAF--PGIKCTVLDL-PHAVANLPEADNLKYIAGDMLR 203 (301)
Q Consensus 158 gG~G~~~~~l~~~~--P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~ 203 (301)
||.|.++..+++.. .+.+++++|. ++.++.+++ ..+.++.||..+
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~-~~~~~i~gd~~~ 51 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE-EGVEVIYGDATD 51 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH-TTSEEEES-TTS
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh-cccccccccchh
Confidence 45556666666532 3458999999 777777764 338899999975
No 432
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=38.16 E-value=86 Score=26.64 Aligned_cols=87 Identities=14% Similarity=0.153 Sum_probs=51.9
Q ss_pred cCCCeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEe---CCCCC-----CCCcchhHHH----
Q 043533 148 EGLGSLVDVGGGN-VSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIA---GDMLR-----FIPPANAFLF---- 213 (301)
Q Consensus 148 ~~~~~vlDvGgG~-G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~---~D~~~-----~~p~~D~i~~---- 213 (301)
....+|+.+|+|+ |..+..+++.. +.++++++. ++..+.++...--.++. .+... ....+|+++-
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~ 211 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGG 211 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCC
Confidence 5567999999885 77777788776 478888887 44444333211001111 01100 0112565554
Q ss_pred -HHHHHHHHhcccCCCCcEEEEEeee
Q 043533 214 -KILKKRREAIASNGERGKVIIIDIV 238 (301)
Q Consensus 214 -~iL~~~~~aL~p~~~gg~l~i~e~~ 238 (301)
..+..+.+.|++ +|+++.+...
T Consensus 212 ~~~~~~~~~~l~~---~G~~v~~~~~ 234 (271)
T cd05188 212 PETLAQALRLLRP---GGRIVVVGGT 234 (271)
T ss_pred HHHHHHHHHhccc---CCEEEEEccC
Confidence 678888899999 8998877653
No 433
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=38.10 E-value=17 Score=23.41 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=21.2
Q ss_pred hHHhcCCCCCHHHHHHhcCCCCCCce
Q 043533 20 YKLIHGRAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 20 F~~L~~~p~t~~elA~~~~~~~~~l~ 45 (301)
+..|..++.|..+|++.++++...+.
T Consensus 3 l~~l~~~~~~~~~i~~~l~is~~~v~ 28 (66)
T smart00418 3 LKLLAEGELCVCELAEILGLSQSTVS 28 (66)
T ss_pred HHHhhcCCccHHHHHHHHCCCHHHHH
Confidence 44555789999999999999887766
No 434
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=37.89 E-value=26 Score=31.63 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=13.3
Q ss_pred HHHHHHHHhcccCCCCcEEEEEe
Q 043533 214 KILKKRREAIASNGERGKVIIID 236 (301)
Q Consensus 214 ~iL~~~~~aL~p~~~gg~l~i~e 236 (301)
.+++++.+.++...|.|.++++.
T Consensus 91 ~i~~~~~~~i~~~~p~~~vivvs 113 (299)
T TIGR01771 91 RIMKSIVPEVVKSGFDGIFLVAT 113 (299)
T ss_pred HHHHHHHHHHHHhCCCeEEEEeC
Confidence 56666655554222268877765
No 435
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=37.85 E-value=47 Score=33.22 Aligned_cols=59 Identities=24% Similarity=0.287 Sum_probs=39.0
Q ss_pred eEEEecCCccHHHHHHHHH--CCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCC-------CCcchhHHH
Q 043533 152 SLVDVGGGNVSFSRIISEA--FPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLRF-------IPPANAFLF 213 (301)
Q Consensus 152 ~vlDvGgG~G~~~~~l~~~--~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~~-------~p~~D~i~~ 213 (301)
.|+=+ |.|.++..+++. ..+.+++++|. |+.++.+++ .....+.||..++ ..++|++++
T Consensus 402 ~vII~--G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-~g~~v~~GDat~~~~L~~agi~~A~~vv~ 470 (601)
T PRK03659 402 QVIIV--GFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK-YGYKVYYGDATQLELLRAAGAEKAEAIVI 470 (601)
T ss_pred CEEEe--cCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-CCCeEEEeeCCCHHHHHhcCCccCCEEEE
Confidence 45554 555666666553 23678999999 888888774 4567888998763 223666555
No 436
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=37.83 E-value=38 Score=30.20 Aligned_cols=38 Identities=21% Similarity=0.359 Sum_probs=22.7
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcC
Q 043533 151 GSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANL 188 (301)
Q Consensus 151 ~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a 188 (301)
.+|.=||+|.=..+++.+-...+.+++++|. ++.++.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~ 42 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKA 42 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHH
Confidence 4678888875443333332333568999998 5554443
No 437
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=37.70 E-value=25 Score=28.07 Aligned_cols=41 Identities=7% Similarity=0.055 Sum_probs=30.7
Q ss_pred CCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEe
Q 043533 158 GGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIA 198 (301)
Q Consensus 158 gG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~ri~~~~ 198 (301)
||||.=..-.++++|+++...+--+.....++.+++.+++.
T Consensus 62 CGtGiG~siaANKv~GIRaA~~~d~~~A~~ar~hNnaNVl~ 102 (141)
T PRK12613 62 DAYGAGPFMVATKLKGMVAAEVSDERSAYMTRGHNNARMIT 102 (141)
T ss_pred cCCCHhHhhhhhcCCCeEEEEECCHHHHHHHHHHcCCcEEE
Confidence 78888788889999999987777677777777655544443
No 438
>PRK13699 putative methylase; Provisional
Probab=37.61 E-value=70 Score=27.59 Aligned_cols=40 Identities=13% Similarity=0.008 Sum_probs=32.0
Q ss_pred cCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC
Q 043533 148 EGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLP 189 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~ 189 (301)
.....|||-=||+|..+.+..+. +-+++++|+ ++..+.+.
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~ 202 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQ 202 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHH
Confidence 34679999999999999988876 557999999 66655554
No 439
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=37.17 E-value=29 Score=29.96 Aligned_cols=44 Identities=20% Similarity=0.054 Sum_probs=37.6
Q ss_pred hHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 043533 135 TSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL 181 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl 181 (301)
.+.++ +.+. ....++.+|.-=|.|..+..+++++|+++..++|.
T Consensus 32 ~devl-~~ls--pv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDr 75 (303)
T KOG2782|consen 32 LDEVL-DILS--PVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDR 75 (303)
T ss_pred hhhHH-HHcC--CCCCceEEEEeccCCcchHHHHHhCcHhhhhhhcc
Confidence 45566 6665 45678999999999999999999999999999998
No 440
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=37.05 E-value=65 Score=29.47 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=14.6
Q ss_pred HHHHHHHHhcccCC-CCcEEEEEe
Q 043533 214 KILKKRREAIASNG-ERGKVIIID 236 (301)
Q Consensus 214 ~iL~~~~~aL~p~~-~gg~l~i~e 236 (301)
++++++...++... |.+.++++.
T Consensus 105 ~i~~~i~~~i~~~~~~~~iiivvs 128 (322)
T cd01338 105 KIFTAQGKALNDVASRDVKVLVVG 128 (322)
T ss_pred HHHHHHHHHHHhhCCCCeEEEEec
Confidence 77777777664322 267777765
No 441
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR. All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.
Probab=36.84 E-value=28 Score=29.41 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=24.9
Q ss_pred HHHHhHHhc-CCCCCHHHHHHhcCCCCCCce
Q 043533 16 QAQLYKLIH-GRAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 16 ~l~lF~~L~-~~p~t~~elA~~~~~~~~~l~ 45 (301)
+-.|...|. .+++|..+||+.+++++..++
T Consensus 3 r~~IL~~L~~~~~~t~~eLA~~lgis~~tV~ 33 (203)
T TIGR02702 3 KEDILSYLLKQGQATAAALAEALAISPQAVR 33 (203)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHH
Confidence 456677774 588999999999999988777
No 442
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=36.75 E-value=29 Score=24.74 Aligned_cols=30 Identities=23% Similarity=0.230 Sum_probs=26.1
Q ss_pred HHHHhHHhcCCCCCHHHHHHhcCCCCCCce
Q 043533 16 QAQLYKLIHGRAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 16 ~l~lF~~L~~~p~t~~elA~~~~~~~~~l~ 45 (301)
.+-+|..+...+.|-++||+++|++...+.
T Consensus 8 ~~~ll~~~~~~~~SGe~La~~LgiSRtaVw 37 (79)
T COG1654 8 LLLLLLLLTGNFVSGEKLAEELGISRTAVW 37 (79)
T ss_pred HHHHHHHcCCCcccHHHHHHHHCccHHHHH
Confidence 455788888889999999999999999887
No 443
>PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species. The region in question is approximately 150 amino acid residues long.
Probab=36.34 E-value=21 Score=28.56 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=19.6
Q ss_pred CCCCCHHHHHHhcCCCCCCce
Q 043533 25 GRAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 25 ~~p~t~~elA~~~~~~~~~l~ 45 (301)
+||+|++|||-+.|++.+.+-
T Consensus 4 ~Ga~T~eELA~~FGvttRkva 24 (155)
T PF07789_consen 4 EGAKTAEELAGKFGVTTRKVA 24 (155)
T ss_pred cCcccHHHHHHHhCcchhhhH
Confidence 599999999999999999876
No 444
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=36.09 E-value=19 Score=21.99 Aligned_cols=20 Identities=15% Similarity=0.242 Sum_probs=17.0
Q ss_pred CCCCHHHHHHhcCCCCCCce
Q 043533 26 RAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 26 ~p~t~~elA~~~~~~~~~l~ 45 (301)
-|.|..+||+.++++...+.
T Consensus 7 ~~~s~~~la~~l~~s~~tv~ 26 (48)
T smart00419 7 LPLTRQEIAELLGLTRETVS 26 (48)
T ss_pred eccCHHHHHHHHCCCHHHHH
Confidence 36899999999999877766
No 445
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=36.02 E-value=49 Score=26.12 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=19.8
Q ss_pred cCC-ccCCHHHHHHHHHhCCCceeEEEecCC
Q 043533 263 ATG-KERTESEWAKLFFDAVFSHYKITPIFG 292 (301)
Q Consensus 263 ~~g-~~rt~~e~~~ll~~aGf~~~~~~~~~~ 292 (301)
.+| +..+.++++++|+++||+.++.+--.|
T Consensus 13 VGG~nki~MaeLr~~l~~~Gf~~V~Tyi~SG 43 (137)
T PF08002_consen 13 VGGKNKIKMAELREALEDLGFTNVRTYIQSG 43 (137)
T ss_dssp BTTBS---HHHHHHHHHHCT-EEEEEETTTT
T ss_pred cCCCCcccHHHHHHHHHHcCCCCceEEEeeC
Confidence 445 346899999999999999988554333
No 446
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=35.68 E-value=86 Score=28.06 Aligned_cols=87 Identities=15% Similarity=0.110 Sum_probs=53.2
Q ss_pred ccCCCeEEEec--CCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeC--CCCC----CC-C-cchhHHH-
Q 043533 147 FEGLGSLVDVG--GGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIAG--DMLR----FI-P-PANAFLF- 213 (301)
Q Consensus 147 ~~~~~~vlDvG--gG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~~--D~~~----~~-p-~~D~i~~- 213 (301)
.....+||=.| ||.|..+..+++.. +.++++.+. ++-.+.+++ +....+... +.+. .. + .+|+++-
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~ 214 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDN 214 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEEC
Confidence 55667888887 67888999999876 668777775 444444432 111111111 1111 11 1 2565553
Q ss_pred ---HHHHHHHHhcccCCCCcEEEEEee
Q 043533 214 ---KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 ---~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
..+....+.|++ +|+++.+..
T Consensus 215 ~G~~~~~~~~~~l~~---~G~iv~~G~ 238 (325)
T TIGR02825 215 VGGEFSNTVIGQMKK---FGRIAICGA 238 (325)
T ss_pred CCHHHHHHHHHHhCc---CcEEEEecc
Confidence 667889999999 899998754
No 447
>COG1510 Predicted transcriptional regulators [Transcription]
Probab=34.41 E-value=24 Score=29.06 Aligned_cols=27 Identities=22% Similarity=0.566 Sum_probs=22.5
Q ss_pred HhHHh--cCCCCCHHHHHHhcCCCCCCce
Q 043533 19 LYKLI--HGRAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 19 lF~~L--~~~p~t~~elA~~~~~~~~~l~ 45 (301)
||-+| ..+|+|++||++++|++...+.
T Consensus 31 iYgilyls~~Pmtl~Ei~E~lg~Sks~vS 59 (177)
T COG1510 31 IYGILYLSRKPLTLDEIAEALGMSKSNVS 59 (177)
T ss_pred HhhhheecCCCccHHHHHHHHCCCcchHH
Confidence 34444 4689999999999999999887
No 448
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=34.25 E-value=42 Score=20.70 Aligned_cols=23 Identities=13% Similarity=0.349 Sum_probs=13.2
Q ss_pred HhHHhcCCCCCHHHHHHhcCCCCC
Q 043533 19 LYKLIHGRAITLSELVSALDIQPT 42 (301)
Q Consensus 19 lF~~L~~~p~t~~elA~~~~~~~~ 42 (301)
|...+. ...|..+||+.+|.++.
T Consensus 13 I~~l~~-~G~s~~~IA~~lg~s~s 35 (44)
T PF13936_consen 13 IEALLE-QGMSIREIAKRLGRSRS 35 (44)
T ss_dssp HHHHHC-S---HHHHHHHTT--HH
T ss_pred HHHHHH-cCCCHHHHHHHHCcCcH
Confidence 444455 45999999999998754
No 449
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=34.05 E-value=14 Score=26.73 Aligned_cols=47 Identities=23% Similarity=0.323 Sum_probs=32.7
Q ss_pred HHHhHHhcCCCCCHHHHHHhc-CCCCCCce-----------e-----ecCC--CeEEcChhcchhh
Q 043533 17 AQLYKLIHGRAITLSELVSAL-DIQPTKTT-----------V-----NGQE--EAYGLTAASTLLI 63 (301)
Q Consensus 17 l~lF~~L~~~p~t~~elA~~~-~~~~~~l~-----------v-----e~~~--~~y~~t~~s~~L~ 63 (301)
+-|...|..||..+.||.+.+ ++++..|. | ...+ -.|.+|+.++.|.
T Consensus 8 ~~IL~~l~~g~~rf~el~~~l~~is~~~L~~~L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~l~ 73 (90)
T PF01638_consen 8 LLILRALFQGPMRFSELQRRLPGISPKVLSQRLKELEEAGLVERRVYPEVPPRVEYSLTEKGKELL 73 (90)
T ss_dssp HHHHHHHTTSSEEHHHHHHHSTTS-HHHHHHHHHHHHHTTSEEEEEESSSSSEEEEEE-HHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHhcchhHHHHHHHHHHHHHHcchhhcccccCCCCCCccCCCcCHHHHH
Confidence 345666777999999999999 88888775 2 1122 3599999998655
No 450
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=33.90 E-value=36 Score=27.59 Aligned_cols=46 Identities=20% Similarity=0.274 Sum_probs=34.9
Q ss_pred HhHHhc-CCCCCHHHHHHhcCCCCCCce-----------ee-cCCCeEEcChhcchhhc
Q 043533 19 LYKLIH-GRAITLSELVSALDIQPTKTT-----------VN-GQEEAYGLTAASTLLIK 64 (301)
Q Consensus 19 lF~~L~-~~p~t~~elA~~~~~~~~~l~-----------ve-~~~~~y~~t~~s~~L~~ 64 (301)
||+.+. .+++...+||+.+++++..+. |+ ..-+.|.+|+.++.+..
T Consensus 15 Iy~l~~~~~~~~~~diA~~L~Vsp~sVt~ml~rL~~~GlV~~~~y~gi~LT~~G~~~a~ 73 (154)
T COG1321 15 IYELLEEKGFARTKDIAERLKVSPPSVTEMLKRLERLGLVEYEPYGGVTLTEKGREKAK 73 (154)
T ss_pred HHHHHhccCcccHHHHHHHhCCCcHHHHHHHHHHHHCCCeEEecCCCeEEChhhHHHHH
Confidence 455554 589999999999999998875 23 35688999988875443
No 451
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=33.55 E-value=10 Score=22.98 Aligned_cols=20 Identities=15% Similarity=0.378 Sum_probs=13.6
Q ss_pred CCCCHHHHHHhcCCCCCCce
Q 043533 26 RAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 26 ~p~t~~elA~~~~~~~~~l~ 45 (301)
.+.|+++||+.+|+++..+.
T Consensus 7 ~~~~l~~iA~~~g~S~~~f~ 26 (42)
T PF00165_consen 7 QKLTLEDIAEQAGFSPSYFS 26 (42)
T ss_dssp SS--HHHHHHHHTS-HHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHH
Confidence 56999999999999766554
No 452
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=33.47 E-value=29 Score=27.75 Aligned_cols=40 Identities=10% Similarity=0.058 Sum_probs=30.0
Q ss_pred CCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEE
Q 043533 158 GGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYI 197 (301)
Q Consensus 158 gG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~ri~~~ 197 (301)
||||.=..-.++++|+++.-.+--+.....++.+++.++.
T Consensus 63 CGTGiG~siaANK~~GIRAA~~~d~~~A~~ar~hNnaNVL 102 (142)
T PRK08621 63 DAYGAGSFMVATKIKGMVAAEVSDERSAYMTRGHNNARMI 102 (142)
T ss_pred cCCChhhhhhhhcCCCeEEEEECCHHHHHHHHHHcCCcEE
Confidence 7888878888999999998777667777777765554443
No 453
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=33.28 E-value=38 Score=30.24 Aligned_cols=87 Identities=16% Similarity=0.078 Sum_probs=52.6
Q ss_pred ccCCCeEEEec--CCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEe--CCCCCC---C-C-cchhHHH--
Q 043533 147 FEGLGSLVDVG--GGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIA--GDMLRF---I-P-PANAFLF-- 213 (301)
Q Consensus 147 ~~~~~~vlDvG--gG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~--~D~~~~---~-p-~~D~i~~-- 213 (301)
.....+||=.| ||.|..+..+++.. ++++++.+. ++-.+.+++ +-.-.+.. .|+.+. . + .+|+++-
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~~ 219 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYFDNV 219 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEEECC
Confidence 45567888777 67888888899886 678877775 444444433 11111111 121110 1 1 2555443
Q ss_pred --HHHHHHHHhcccCCCCcEEEEEee
Q 043533 214 --KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 --~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
..+....+.|++ +|+++.+..
T Consensus 220 g~~~~~~~~~~l~~---~G~iv~~g~ 242 (329)
T cd08294 220 GGEFSSTVLSHMND---FGRVAVCGS 242 (329)
T ss_pred CHHHHHHHHHhhcc---CCEEEEEcc
Confidence 778899999999 899987753
No 454
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=32.88 E-value=98 Score=29.30 Aligned_cols=34 Identities=6% Similarity=-0.092 Sum_probs=23.9
Q ss_pred hchhhccccCCccCCHHHHHHHHHhCCCceeEEEecC
Q 043533 255 FDIVMSVNATGKERTESEWAKLFFDAVFSHYKITPIF 291 (301)
Q Consensus 255 ~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 291 (301)
..++|+ +-........++.|++.||.+.-.+.++
T Consensus 188 I~iTmf---GvTTp~V~~~~~~Le~~G~Ev~VFHAtG 221 (403)
T PF06792_consen 188 IGITMF---GVTTPCVDAIRERLEEEGYEVLVFHATG 221 (403)
T ss_pred EEEECC---CCcHHHHHHHHHHHHhcCCeEEEEcCCC
Confidence 444544 2334567889999999999988777663
No 455
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=32.75 E-value=32 Score=25.59 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHhCCCceeEEEecC-Cc--eeEEEEeC
Q 043533 268 RTESEWAKLFFDAVFSHYKITPIF-GM--KSLIEVYP 301 (301)
Q Consensus 268 rt~~e~~~ll~~aGf~~~~~~~~~-~~--~~~i~a~~ 301 (301)
..++++.+.++++||++.+...+. +| ..++|+++
T Consensus 61 ~~e~~l~~~l~~~g~~~~r~~ris~gFY~S~llE~~r 97 (97)
T PF07109_consen 61 HREEDLRRALAAAGWRIGRTERISSGFYISQLLEAVR 97 (97)
T ss_pred eCHHHHHHHHHhCCCeeeecccccCcChHHHHhhccC
Confidence 367899999999999999988773 43 46677654
No 456
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=32.43 E-value=50 Score=26.98 Aligned_cols=29 Identities=31% Similarity=0.581 Sum_probs=24.4
Q ss_pred eEEEecCCccHHHHHHHHHCCCCeEEEee
Q 043533 152 SLVDVGGGNVSFSRIISEAFPGIKCTVLD 180 (301)
Q Consensus 152 ~vlDvGgG~G~~~~~l~~~~P~~~~~~~D 180 (301)
+|+=||||.+.+..+..-+.++.+++++|
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~ 29 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIE 29 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEES
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEe
Confidence 47889999999988877777788888885
No 457
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=32.01 E-value=26 Score=23.55 Aligned_cols=21 Identities=14% Similarity=0.324 Sum_probs=18.5
Q ss_pred CCCCCHHHHHHhcCCCCCCce
Q 043533 25 GRAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 25 ~~p~t~~elA~~~~~~~~~l~ 45 (301)
.|.++..+||+++|+++..++
T Consensus 20 ~g~i~lkdIA~~Lgvs~~tIr 40 (60)
T PF10668_consen 20 NGKIKLKDIAEKLGVSESTIR 40 (60)
T ss_pred CCCccHHHHHHHHCCCHHHHH
Confidence 478999999999999987766
No 458
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=31.77 E-value=18 Score=26.61 Aligned_cols=18 Identities=17% Similarity=0.180 Sum_probs=13.1
Q ss_pred EEEecCCccHHHHHHHHH
Q 043533 153 LVDVGGGNVSFSRIISEA 170 (301)
Q Consensus 153 vlDvGgG~G~~~~~l~~~ 170 (301)
=+|||||.|..-.+--+.
T Consensus 6 NIDIGcG~GNTmda~fRs 23 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAAFRS 23 (124)
T ss_pred ccccccCCCcchhhhhhc
Confidence 479999999876554444
No 459
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=31.74 E-value=97 Score=27.06 Aligned_cols=60 Identities=17% Similarity=0.207 Sum_probs=40.1
Q ss_pred cCCCeEEEecC-CccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCCCCCc-chhHHH
Q 043533 148 EGLGSLVDVGG-GNVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLRFIPP-ANAFLF 213 (301)
Q Consensus 148 ~~~~~vlDvGg-G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~~~p~-~D~i~~ 213 (301)
....++|=+|+ =+|.+....+...- +++++|+ |++.... .++|.|.. +..+.+. +|+|+=
T Consensus 40 ~~~k~~lI~G~YltG~~iA~~L~~~~--eV~lvDI~p~lk~ll--~~~i~F~~--~~~~~~~~~DlIID 102 (252)
T PF06690_consen 40 EEFKQALIFGAYLTGNFIASALSKKC--EVTLVDIHPHLKELL--NENIKFME--FRNGLEGNPDLIID 102 (252)
T ss_pred cccceEEEEEEEeehHHHHHHhccCc--eEEEEeCcHHHHHHh--cCCCceee--ccCCCCCCCCEEEE
Confidence 34458888887 46777666666643 8999999 7776665 57888873 2223333 777664
No 460
>PF10078 DUF2316: Uncharacterized protein conserved in bacteria (DUF2316); InterPro: IPR018757 Members of this family of hypothetical bacterial proteins have no known function.
Probab=31.69 E-value=43 Score=24.45 Aligned_cols=39 Identities=10% Similarity=0.163 Sum_probs=31.2
Q ss_pred CChHHHHHHHHHHhHHhcCCCCCHHHHHHhcCCCCCCce
Q 043533 7 QGAKELFQGQAQLYKLIHGRAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 7 ~~~~~~~~~~l~lF~~L~~~p~t~~elA~~~~~~~~~l~ 45 (301)
+.+++.-+++-.|=..+....+|.++||+.+++++..+.
T Consensus 3 Ln~~Q~~~T~~ELq~nf~~~~ls~~~ia~dL~~s~~~le 41 (89)
T PF10078_consen 3 LNPEQRRATRQELQANFELSGLSLEQIAADLGTSPEHLE 41 (89)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHH
Confidence 345666666667777777678999999999999998887
No 461
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=31.67 E-value=24 Score=21.89 Aligned_cols=27 Identities=15% Similarity=0.329 Sum_probs=21.2
Q ss_pred HhHHhc-CCCCCHHHHHHhcCCCCCCce
Q 043533 19 LYKLIH-GRAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 19 lF~~L~-~~p~t~~elA~~~~~~~~~l~ 45 (301)
+++.|. +++.|..+||+.++++...+.
T Consensus 5 il~~l~~~~~~s~~~l~~~l~~s~~tv~ 32 (53)
T smart00420 5 ILELLAQQGKVSVEELAELLGVSEMTIR 32 (53)
T ss_pred HHHHHHHcCCcCHHHHHHHHCCCHHHHH
Confidence 455554 478999999999999887766
No 462
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=31.61 E-value=25 Score=26.06 Aligned_cols=30 Identities=17% Similarity=0.407 Sum_probs=25.5
Q ss_pred HHHHhHHhcC-CCCCHHHHHHhcCCCCCCce
Q 043533 16 QAQLYKLIHG-RAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 16 ~l~lF~~L~~-~p~t~~elA~~~~~~~~~l~ 45 (301)
...|...|.. ++.|..+||+.+|+++..+.
T Consensus 5 D~~il~~L~~~~~~~~~~la~~l~~s~~tv~ 35 (108)
T smart00344 5 DRKILEELQKDARISLAELAKKVGLSPSTVH 35 (108)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHCcCHHHHH
Confidence 4667778864 78999999999999999887
No 463
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=31.48 E-value=3.2e+02 Score=24.15 Aligned_cols=123 Identities=19% Similarity=0.152 Sum_probs=64.1
Q ss_pred CCeEEEec-CCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEeCCCCCCCCcchhHHHHHHHHHHHhcccCCC
Q 043533 150 LGSLVDVG-GGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIAGDMLRFIPPANAFLFKILKKRREAIASNGE 228 (301)
Q Consensus 150 ~~~vlDvG-gG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~ri~~~~~D~~~~~p~~D~i~~~iL~~~~~aL~p~~~ 228 (301)
...|+-|| ||-|.++.+.+.+--=-+.+++|...+.- .+++-+.+-....+...-+ .++++......|
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~v-----TN~NRQi~A~~~~iGk~Kv---~vm~eri~~InP--- 98 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCV-----TNTNRQIHALLGDIGKPKV---EVMKERIKQINP--- 98 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccc-----cccchhhHhhhhhcccHHH---HHHHHHHHhhCC---
Confidence 35566666 47888888877665334688888755531 1222222212212222111 456777777778
Q ss_pred CcEEEEEeeeeCCCccchhhhhhhhhhchhhccccCCccCCHHHHHHHHHhCCCceeEEE
Q 043533 229 RGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAVFSHYKIT 288 (301)
Q Consensus 229 gg~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 288 (301)
...+-.++..+.++..+. + ...-+|+..-+ --..+++..+.++....+..++...
T Consensus 99 ~c~V~~~~~f~t~en~~~-~--~~~~~DyvIDa--iD~v~~Kv~Li~~c~~~ki~vIss~ 153 (263)
T COG1179 99 ECEVTAINDFITEENLED-L--LSKGFDYVIDA--IDSVRAKVALIAYCRRNKIPVISSM 153 (263)
T ss_pred CceEeehHhhhCHhHHHH-H--hcCCCCEEEEc--hhhhHHHHHHHHHHHHcCCCEEeec
Confidence 677777766665544332 1 11123332211 1224566667777777776655543
No 464
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=31.16 E-value=71 Score=28.53 Aligned_cols=87 Identities=10% Similarity=0.101 Sum_probs=50.0
Q ss_pred ccCCCeEEEecCC-ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEeC--CCCCCCC-cchhHHH-----HH
Q 043533 147 FEGLGSLVDVGGG-NVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-ADNLKYIAG--DMLRFIP-PANAFLF-----KI 215 (301)
Q Consensus 147 ~~~~~~vlDvGgG-~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-~~ri~~~~~--D~~~~~p-~~D~i~~-----~i 215 (301)
.....+|+-+|+| .|..+..++++. +.++++.+. ++..+.+++ .....+... +.....+ .+|+++- ..
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~ 238 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGAA 238 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcHHH
Confidence 5556788888876 777777777775 567777776 444443322 111001000 1100011 2454443 67
Q ss_pred HHHHHHhcccCCCCcEEEEEee
Q 043533 216 LKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 216 L~~~~~aL~p~~~gg~l~i~e~ 237 (301)
++.+.+.|++ +|+++.+..
T Consensus 239 ~~~~~~~l~~---~G~~i~~~~ 257 (330)
T cd08245 239 AEAALGGLRR---GGRIVLVGL 257 (330)
T ss_pred HHHHHHhccc---CCEEEEECC
Confidence 7888999999 898887754
No 465
>PHA00738 putative HTH transcription regulator
Probab=31.03 E-value=52 Score=24.93 Aligned_cols=31 Identities=16% Similarity=0.150 Sum_probs=27.3
Q ss_pred HHHHHhHHhcCC-CCCHHHHHHhcCCCCCCce
Q 043533 15 GQAQLYKLIHGR-AITLSELVSALDIQPTKTT 45 (301)
Q Consensus 15 ~~l~lF~~L~~~-p~t~~elA~~~~~~~~~l~ 45 (301)
+|+.|++.|.++ ++++.+|++.++++...+.
T Consensus 13 tRr~IL~lL~~~e~~~V~eLae~l~lSQptVS 44 (108)
T PHA00738 13 LRRKILELIAENYILSASLISHTLLLSYTTVL 44 (108)
T ss_pred HHHHHHHHHHHcCCccHHHHHHhhCCCHHHHH
Confidence 689999999875 6999999999999888776
No 466
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=30.92 E-value=74 Score=27.95 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=27.0
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 043533 151 GSLVDVGGGNVSFSRIISEAFPGIKCTVLDL 181 (301)
Q Consensus 151 ~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl 181 (301)
..|+=||+|...++.++.-+.++++++++|.
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~G~~V~liEk 56 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVFER 56 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCeEEEEec
Confidence 4688899999999888877778999999997
No 467
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=30.82 E-value=31 Score=33.54 Aligned_cols=55 Identities=15% Similarity=0.261 Sum_probs=42.8
Q ss_pred HHHHHhHHhcC--CCCCHHHHHHhcCCCCCCce-----------e---ecCCCeEEcChhcc-hhhcCCCCC
Q 043533 15 GQAQLYKLIHG--RAITLSELVSALDIQPTKTT-----------V---NGQEEAYGLTAAST-LLIKDKPYC 69 (301)
Q Consensus 15 ~~l~lF~~L~~--~p~t~~elA~~~~~~~~~l~-----------v---e~~~~~y~~t~~s~-~L~~~~~~~ 69 (301)
.+..|...|.+ +..+..+||+.+|++...+. | +.....|.+|+.++ ++..+.|..
T Consensus 7 ~e~~iL~~l~~~~~~~~~~~la~~~~~~~~~v~~~~~~L~~kg~v~~~~~~~~~~~LT~eG~~~~~~G~PE~ 78 (494)
T PTZ00326 7 EENTILSKLESENEIVNSLALAESLNIDHQKVVGAIKSLESANYITTEMKKSNTWTLTEEGEDYLKNGSPEY 78 (494)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHcCCCHHHHHHHHHHHHhCCCEEEEEEEEEEEEECHHHHHHHHcCCHHH
Confidence 34556777765 57999999999999877665 2 46678899999998 788877653
No 468
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=30.52 E-value=78 Score=28.75 Aligned_cols=63 Identities=24% Similarity=0.419 Sum_probs=39.0
Q ss_pred HHHHHHhhcccccchHHHHHhhhhhcccCCCeEEEecCCccHHHHHHHHHCC--CCeEEEeechHHH
Q 043533 121 QRFNEAMASDSEIMTSFVVKSECKQIFEGLGSLVDVGGGNVSFSRIISEAFP--GIKCTVLDLPHAV 185 (301)
Q Consensus 121 ~~f~~am~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P--~~~~~~~Dlp~~~ 185 (301)
....+.+..........+. +.+. .+....+|+=+|||.-.+...+.+.+| +-++++.|-|+..
T Consensus 246 ~~v~~~i~~~~~~l~~~i~-~~~~-~~~~~~~I~~vGGGA~ll~~~Ik~~~~~~~~~i~i~~~pqfA 310 (318)
T PF06406_consen 246 DDVSEVIEEAVEELINRIL-RELG-DFSDIDRIFFVGGGAILLKDAIKEAFPVPNERIVIVDDPQFA 310 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHT-TS-S-SEEEEESTTHHHHHHHHHHHHT--GGGEE--SSGGGH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHh-hhccCCeEEEECCcHHHHHHHHHHhhCCCCCcEEECCCchhh
Confidence 3334444433333334455 4443 366678899999999999999999976 5678888887654
No 469
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=30.48 E-value=71 Score=29.09 Aligned_cols=85 Identities=14% Similarity=0.217 Sum_probs=42.0
Q ss_pred EEEecC-Cc-cHHHHHHHHHCCC-CeEEEeechHHHhcCCC----CCCeEEEe--CC--CCCCCCcchhHHH--------
Q 043533 153 LVDVGG-GN-VSFSRIISEAFPG-IKCTVLDLPHAVANLPE----ADNLKYIA--GD--MLRFIPPANAFLF-------- 213 (301)
Q Consensus 153 vlDvGg-G~-G~~~~~l~~~~P~-~~~~~~Dlp~~~~~a~~----~~ri~~~~--~D--~~~~~p~~D~i~~-------- 213 (301)
|.=||+ |. |......+...+- -+.+++|.++....+.. ..++++.. +| ..+.+.++|+|++
T Consensus 2 V~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~~ 81 (312)
T TIGR01772 2 VAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRKP 81 (312)
T ss_pred EEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCCC
Confidence 455675 44 5443333333332 36888898552222211 12233332 22 2234445666654
Q ss_pred ------------HHHHHHHHhcccCCCCcEEEEEee
Q 043533 214 ------------KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 ------------~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
++++++.+.++...|++.++++..
T Consensus 82 g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN 117 (312)
T TIGR01772 82 GMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN 117 (312)
T ss_pred CccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 777777766642223687777654
No 470
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=30.38 E-value=1.1e+02 Score=26.50 Aligned_cols=86 Identities=15% Similarity=0.066 Sum_probs=49.9
Q ss_pred ccCCCeEEEecCCc-cHHHHHHHHHCCCCe-EEEeec-hHHHhcCCCC---CCeEEEeCCCCCCCCcchhHHH-----HH
Q 043533 147 FEGLGSLVDVGGGN-VSFSRIISEAFPGIK-CTVLDL-PHAVANLPEA---DNLKYIAGDMLRFIPPANAFLF-----KI 215 (301)
Q Consensus 147 ~~~~~~vlDvGgG~-G~~~~~l~~~~P~~~-~~~~Dl-p~~~~~a~~~---~ri~~~~~D~~~~~p~~D~i~~-----~i 215 (301)
+....+|+-.|+|. |..+..++++. +.+ +++.+. ++..+.+++. +.+.....+. .+-..+|+++- ..
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~-g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~d~vl~~~~~~~~ 172 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAA-GAREVVGVDPDAARRELAEALGPADPVAADTADE-IGGRGADVVIEASGSPSA 172 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEECCCHHHHHHHHHcCCCccccccchhh-hcCCCCCEEEEccCChHH
Confidence 45567788777654 66777777776 455 888886 5555444331 1111000000 01112566553 67
Q ss_pred HHHHHHhcccCCCCcEEEEEee
Q 043533 216 LKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 216 L~~~~~aL~p~~~gg~l~i~e~ 237 (301)
+....+.|++ +|+++.+..
T Consensus 173 ~~~~~~~l~~---~g~~~~~g~ 191 (277)
T cd08255 173 LETALRLLRD---RGRVVLVGW 191 (277)
T ss_pred HHHHHHHhcC---CcEEEEEec
Confidence 7888999999 898887643
No 471
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=30.17 E-value=22 Score=28.61 Aligned_cols=44 Identities=14% Similarity=0.080 Sum_probs=33.5
Q ss_pred EecCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEe
Q 043533 155 DVGGGNVSFSRIISEAFPGIKCTVLDLPHAVANLPEADNLKYIA 198 (301)
Q Consensus 155 DvGgG~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~ri~~~~ 198 (301)
=+-||||.=....+.++|+++...+--+.....++.+++.+++.
T Consensus 63 IliCGtGiG~siaANK~~GiRAA~~~d~~sA~~ar~hNnaNVl~ 106 (148)
T TIGR02133 63 IVIGGSGNGEAIAANKVKGARAALAWDTASAGRARLHNNANVVG 106 (148)
T ss_pred EEEcCCChhheeeecccCCeEEEEECCHHHHHHHHHHcCCcEEE
Confidence 34589998888889999999987777777777777655555444
No 472
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=29.86 E-value=22 Score=24.02 Aligned_cols=21 Identities=14% Similarity=0.240 Sum_probs=16.8
Q ss_pred CCCCCHHHHHHhcCCCCCCce
Q 043533 25 GRAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 25 ~~p~t~~elA~~~~~~~~~l~ 45 (301)
++|+|..|||+.+|++...++
T Consensus 13 ~~p~~T~eiA~~~gls~~~aR 33 (62)
T PF04703_consen 13 NGPLKTREIADALGLSIYQAR 33 (62)
T ss_dssp TS-EEHHHHHHHHTS-HHHHH
T ss_pred CCCCCHHHHHHHhCCCHHHHH
Confidence 489999999999999887776
No 473
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=29.79 E-value=66 Score=32.32 Aligned_cols=51 Identities=27% Similarity=0.354 Sum_probs=33.7
Q ss_pred CeEEEecCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC
Q 043533 151 GSLVDVGGGN-VSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLR 203 (301)
Q Consensus 151 ~~vlDvGgG~-G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~ 203 (301)
.+|+=+|||. |....+.+++ .+.+++++|. ++.++.+++ .....+.||..+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~-~g~~vvvID~d~~~v~~~~~-~g~~v~~GDat~ 453 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLS-SGVKMTVLDHDPDHIETLRK-FGMKVFYGDATR 453 (621)
T ss_pred CcEEEEecChHHHHHHHHHHh-CCCCEEEEECCHHHHHHHHh-cCCeEEEEeCCC
Confidence 4677666553 2333333333 2678999999 888887764 457788899876
No 474
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=29.51 E-value=1e+02 Score=22.75 Aligned_cols=71 Identities=15% Similarity=0.100 Sum_probs=42.5
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeechH-HHhcCCCCCCeEEEeCCCCCCCCcchhHHH-----HHHHHHHHhc
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDLPH-AVANLPEADNLKYIAGDMLRFIPPANAFLF-----KILKKRREAI 223 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dlp~-~~~~a~~~~ri~~~~~D~~~~~p~~D~i~~-----~iL~~~~~aL 223 (301)
.++||=||||.-.....-.-.--+.+++++.... ..+ +++++....+.+.+..+|+|+. .+-+++++..
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~-----~~i~~~~~~~~~~l~~~~lV~~at~d~~~n~~i~~~a 81 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE-----GLIQLIRREFEEDLDGADLVFAATDDPELNEAIYADA 81 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH-----TSCEEEESS-GGGCTTESEEEE-SS-HHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh-----hHHHHHhhhHHHHHhhheEEEecCCCHHHHHHHHHHH
Confidence 5788889997666544433333357788877642 222 5777777666435555777776 5556666666
Q ss_pred cc
Q 043533 224 AS 225 (301)
Q Consensus 224 ~p 225 (301)
+.
T Consensus 82 ~~ 83 (103)
T PF13241_consen 82 RA 83 (103)
T ss_dssp HH
T ss_pred hh
Confidence 64
No 475
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=29.29 E-value=2.3e+02 Score=26.27 Aligned_cols=98 Identities=16% Similarity=0.144 Sum_probs=61.7
Q ss_pred HHHHhhhhhcccCCCeEEEecCC-ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeC----CCCC---C-CC
Q 043533 137 FVVKSECKQIFEGLGSLVDVGGG-NVSFSRIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAG----DMLR---F-IP 206 (301)
Q Consensus 137 ~~~~~~~~~~~~~~~~vlDvGgG-~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~----D~~~---~-~p 206 (301)
.++ +..+ .+...+|.-+||| .|..++.=++..-.-+++++|+ ++-.+.|++-.--.++.. |.-+ . .+
T Consensus 176 av~-nta~--v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~ 252 (366)
T COG1062 176 AVV-NTAK--VEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTD 252 (366)
T ss_pred Hhh-hccc--CCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcC
Confidence 344 4444 5667888888875 5667777777777789999999 888888876211111111 1111 0 11
Q ss_pred -cchhHHH-----HHHHHHHHhcccCCCCcEEEEEeeeeC
Q 043533 207 -PANAFLF-----KILKKRREAIASNGERGKVIIIDIVIN 240 (301)
Q Consensus 207 -~~D~i~~-----~iL~~~~~aL~p~~~gg~l~i~e~~~~ 240 (301)
.+|..+- ..+++..+++.+ +|..+++-..-+
T Consensus 253 gG~d~~~e~~G~~~~~~~al~~~~~---~G~~v~iGv~~~ 289 (366)
T COG1062 253 GGADYAFECVGNVEVMRQALEATHR---GGTSVIIGVAGA 289 (366)
T ss_pred CCCCEEEEccCCHHHHHHHHHHHhc---CCeEEEEecCCC
Confidence 1222221 899999999998 899988865433
No 476
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=29.29 E-value=51 Score=30.14 Aligned_cols=87 Identities=15% Similarity=0.120 Sum_probs=50.9
Q ss_pred ccCCCeEEEecCC-ccHHHHHHHHHCCCC-eEEEeec-hHHHhcCCC-C-CC-eEEEeCCCCCC----CC--cchhHHH-
Q 043533 147 FEGLGSLVDVGGG-NVSFSRIISEAFPGI-KCTVLDL-PHAVANLPE-A-DN-LKYIAGDMLRF----IP--PANAFLF- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG-~G~~~~~l~~~~P~~-~~~~~Dl-p~~~~~a~~-~-~r-i~~~~~D~~~~----~p--~~D~i~~- 213 (301)
.....+||-.|+| .|.++..+++.. +. +++++|. ++-.+.+++ + +. +.....|..+. .+ .+|+++=
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~-G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~ 252 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALA-GASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDA 252 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEEC
Confidence 4556788877764 356677788876 55 4888886 544444433 1 11 11111121110 11 1455443
Q ss_pred ----HHHHHHHHhcccCCCCcEEEEEee
Q 043533 214 ----KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 ----~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
..++...+.+++ ||+++++-.
T Consensus 253 ~g~~~~~~~~~~~~~~---~G~iv~~G~ 277 (358)
T TIGR03451 253 VGRPETYKQAFYARDL---AGTVVLVGV 277 (358)
T ss_pred CCCHHHHHHHHHHhcc---CCEEEEECC
Confidence 578888899999 899988765
No 477
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=29.20 E-value=36 Score=22.53 Aligned_cols=30 Identities=20% Similarity=0.416 Sum_probs=24.1
Q ss_pred HHHHhHHhcCCCCCHHHHHHhcCCCCCCce
Q 043533 16 QAQLYKLIHGRAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 16 ~l~lF~~L~~~p~t~~elA~~~~~~~~~l~ 45 (301)
+..+...+..++.+..|||+.++++...+.
T Consensus 9 ~~~il~~l~~~~~~~~ei~~~~~i~~~~i~ 38 (78)
T cd00090 9 RLRILRLLLEGPLTVSELAERLGLSQSTVS 38 (78)
T ss_pred HHHHHHHHHHCCcCHHHHHHHHCcCHhHHH
Confidence 455677776666999999999999887765
No 478
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=29.15 E-value=59 Score=26.02 Aligned_cols=31 Identities=10% Similarity=0.192 Sum_probs=26.7
Q ss_pred HHHHHhHHhc-CCCCCHHHHHHhcCCCCCCce
Q 043533 15 GQAQLYKLIH-GRAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 15 ~~l~lF~~L~-~~p~t~~elA~~~~~~~~~l~ 45 (301)
....|-+.|. ++..|.++||+++|+++..+.
T Consensus 10 ~D~~Il~~Lq~d~R~s~~eiA~~lglS~~tV~ 41 (153)
T PRK11179 10 LDRGILEALMENARTPYAELAKQFGVSPGTIH 41 (153)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHH
Confidence 4667788885 588999999999999999887
No 479
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=28.94 E-value=48 Score=25.92 Aligned_cols=20 Identities=15% Similarity=0.210 Sum_probs=18.9
Q ss_pred CCCCHHHHHHhcCCCCCCce
Q 043533 26 RAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 26 ~p~t~~elA~~~~~~~~~l~ 45 (301)
++.|+++||+.+++++..++
T Consensus 24 ~~~s~~~ia~~~~ip~~~l~ 43 (135)
T TIGR02010 24 GPVTLADISERQGISLSYLE 43 (135)
T ss_pred CcCcHHHHHHHHCcCHHHHH
Confidence 58999999999999999998
No 480
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=28.93 E-value=77 Score=30.43 Aligned_cols=90 Identities=13% Similarity=0.101 Sum_probs=47.6
Q ss_pred ccCCCeEEEecC-Cc-cHH-HHHHHHH-------CCCCeEEEeech-HH-----HhcCC---C-CCCeEEEeCCCCCCCC
Q 043533 147 FEGLGSLVDVGG-GN-VSF-SRIISEA-------FPGIKCTVLDLP-HA-----VANLP---E-ADNLKYIAGDMLRFIP 206 (301)
Q Consensus 147 ~~~~~~vlDvGg-G~-G~~-~~~l~~~-------~P~~~~~~~Dlp-~~-----~~~a~---~-~~ri~~~~~D~~~~~p 206 (301)
+++.-+|.=||+ |. |.. +..|+.. .-..+++.+|.. +. .+... . ..+|.+..+|+ +.+.
T Consensus 97 ~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~y-e~~k 175 (444)
T PLN00112 97 WKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPY-EVFQ 175 (444)
T ss_pred CCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCH-HHhC
Confidence 566788999998 66 332 2233333 112367788862 21 11111 0 12454444443 2344
Q ss_pred cchhHHH--------------------HHHHHHHHhccc-CCCCcEEEEEee
Q 043533 207 PANAFLF--------------------KILKKRREAIAS-NGERGKVIIIDI 237 (301)
Q Consensus 207 ~~D~i~~--------------------~iL~~~~~aL~p-~~~gg~l~i~e~ 237 (301)
++|+|++ +|++++.+.++. ..|++.++++..
T Consensus 176 daDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsN 227 (444)
T PLN00112 176 DAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGN 227 (444)
T ss_pred cCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCC
Confidence 4555554 777777776644 233788888763
No 481
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=28.88 E-value=2.1e+02 Score=23.17 Aligned_cols=84 Identities=18% Similarity=0.161 Sum_probs=39.9
Q ss_pred cCCCeEEEecCCccHHH-HHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC-CCCcchhHHH-----HHHHHH
Q 043533 148 EGLGSLVDVGGGNVSFS-RIISEAFPGIKCTVLDL-PHAVANLPEADNLKYIAGDMLR-FIPPANAFLF-----KILKKR 219 (301)
Q Consensus 148 ~~~~~vlDvGgG~G~~~-~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~-~~p~~D~i~~-----~iL~~~ 219 (301)
...++|+=-|+|+...+ ...+...++.=..++|. |.-.-.-..+.+|.++.-+.+. ..|++=+|+. .|.+++
T Consensus 66 ~~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~K~G~~~PGt~ipI~~p~~l~~~~pd~vivlaw~y~~EI~~~~ 145 (160)
T PF08484_consen 66 AEGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPLKQGKYLPGTHIPIVSPEELKERKPDYVIVLAWNYKDEIIEKL 145 (160)
T ss_dssp HTT--EEEE---SHHHHHHHHHT--TTTS--EEES-GGGTTEE-TTT--EEEEGGG--SS--SEEEES-GGGHHHHHHHT
T ss_pred HcCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCChhhcCcccCCCCCeECCHHHHhhCCCCEEEEcChhhHHHHHHHH
Confidence 44688998888876654 44454445544456675 3322222235678777776654 3444312222 888888
Q ss_pred HHhcccCCCCcEEEE
Q 043533 220 REAIASNGERGKVII 234 (301)
Q Consensus 220 ~~aL~p~~~gg~l~i 234 (301)
.+.+.. ||++++
T Consensus 146 ~~~~~~---gg~fi~ 157 (160)
T PF08484_consen 146 REYLER---GGKFIV 157 (160)
T ss_dssp HHHHHT---T-EEEE
T ss_pred HHHHhc---CCEEEE
Confidence 888888 898876
No 482
>TIGR02531 yecD_yerC TrpR-related protein YerC/YecD. This model represents a protein subfamily found mostly in the Firmicutes (Bacillus and allies). This family is similar in sequence to the trp operon repressor TrpR described by TIGR01321, and represents a distinct clade within the broader family described by pfam01371. At least one species, Xylella fastidiosa, in the Proteobacteria, has a member of both this family and TIGR01321. Several genomes with a member of this family do not synthesize tryptophan, and members of this family should not be considered trp operon repressors without new evidence.
Probab=28.86 E-value=73 Score=23.16 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=24.2
Q ss_pred HHHHHhHHhcCCCCCHHHHHHhcCCCCCCce
Q 043533 15 GQAQLYKLIHGRAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 15 ~~l~lF~~L~~~p~t~~elA~~~~~~~~~l~ 45 (301)
-+..++..+.+| .|..+||+.+|++..-+.
T Consensus 39 ~R~~I~~ll~~G-~S~~eIA~~LgISrsTIy 68 (88)
T TIGR02531 39 QRLQVAKMLKQG-KTYSDIEAETGASTATIS 68 (88)
T ss_pred HHHHHHHHHHCC-CCHHHHHHHHCcCHHHHH
Confidence 467788888854 899999999999877655
No 483
>PRK06475 salicylate hydroxylase; Provisional
Probab=28.73 E-value=65 Score=30.04 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=27.0
Q ss_pred CeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 043533 151 GSLVDVGGGNVSFSRIISEAFPGIKCTVLDL 181 (301)
Q Consensus 151 ~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl 181 (301)
++|+=||||.+.++.+++-+..+.+++++|.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~ 33 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEK 33 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 5789999999998888877777899999996
No 484
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=28.64 E-value=1.1e+02 Score=31.32 Aligned_cols=138 Identities=13% Similarity=0.120 Sum_probs=73.6
Q ss_pred CCeEEEecCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-----------------------CCCeEEEeCCCCCC
Q 043533 150 LGSLVDVGGGNVSFSRIISEA-FPGIKCTVLDL-PHAVANLPE-----------------------ADNLKYIAGDMLRF 204 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~-~P~~~~~~~Dl-p~~~~~a~~-----------------------~~ri~~~~~D~~~~ 204 (301)
.++|.-||+|+=...++..-. .-+..++++|. ++.++.+.. ..||++. .|+ +.
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~-~~ 381 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGT-TDY-RG 381 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEe-CCh-HH
Confidence 357888888654444443322 34789999998 665554421 2466654 243 33
Q ss_pred CCcchhHHH----------HHHHHHHHhcccCCCCcEEEEEee-eeCCCccchhhhhhhhhhchhh--------ccc-cC
Q 043533 205 IPPANAFLF----------KILKKRREAIASNGERGKVIIIDI-VINAEEEEHELTETKFLFDIVM--------SVN-AT 264 (301)
Q Consensus 205 ~p~~D~i~~----------~iL~~~~~aL~p~~~gg~l~i~e~-~~~~~~~~~~~~~~~~~~d~~~--------~~~-~~ 264 (301)
..++|+|+= ++++++-+.++| + .++...+ .++-..-........++..++. ++. ..
T Consensus 382 ~~~adlViEav~E~l~~K~~v~~~l~~~~~~---~-~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~ 457 (699)
T TIGR02440 382 FKDVDIVIEAVFEDLALKHQMVKDIEQECAA---H-TIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIP 457 (699)
T ss_pred hccCCEEEEeccccHHHHHHHHHHHHhhCCC---C-cEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeC
Confidence 444676653 899999999998 3 4444332 1111000000000001111111 111 11
Q ss_pred Cc---cCCHHHHHHHHHhCCCceeEEEecCCc
Q 043533 265 GK---ERTESEWAKLFFDAVFSHYKITPIFGM 293 (301)
Q Consensus 265 g~---~rt~~e~~~ll~~aGf~~~~~~~~~~~ 293 (301)
|. +.+.+...+++++.|.+.+.+...+|+
T Consensus 458 g~~T~~~~~~~~~~~~~~~gk~pv~v~d~pGf 489 (699)
T TIGR02440 458 HAGTSEQTIATTVALAKKQGKTPIVVADKAGF 489 (699)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEEccccch
Confidence 21 224456678889999999999877774
No 485
>PHA02591 hypothetical protein; Provisional
Probab=28.59 E-value=25 Score=24.93 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=21.4
Q ss_pred HHhHHhcCCCCCHHHHHHhcCCCCCCc
Q 043533 18 QLYKLIHGRAITLSELVSALDIQPTKT 44 (301)
Q Consensus 18 ~lF~~L~~~p~t~~elA~~~~~~~~~l 44 (301)
.|-..|.+.+.|.++||+.+|++...+
T Consensus 50 ~vA~eL~eqGlSqeqIA~~LGVsqetV 76 (83)
T PHA02591 50 SVTHELARKGFTVEKIASLLGVSVRKV 76 (83)
T ss_pred HHHHHHHHcCCCHHHHHHHhCCCHHHH
Confidence 455667777899999999999986644
No 486
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=28.57 E-value=85 Score=21.56 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=23.4
Q ss_pred HHHHHHHHhHHhcCCCCCHHHHHHhcCCCCCCce
Q 043533 12 LFQGQAQLYKLIHGRAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 12 ~~~~~l~lF~~L~~~p~t~~elA~~~~~~~~~l~ 45 (301)
+..++-.|...+. .+-|.+|||+.+|++...+.
T Consensus 6 i~~a~~~L~~~lg-r~Pt~eEiA~~lgis~~~v~ 38 (78)
T PF04539_consen 6 IERARRELEQELG-REPTDEEIAEELGISVEEVR 38 (78)
T ss_dssp HHHHHHHHHHHHS-S--BHHHHHHHHTS-HHHHH
T ss_pred HHHHHHHHHHHhC-CCCCHHHHHHHHcccHHHHH
Confidence 4445566666666 57899999999999999887
No 487
>PRK13239 alkylmercury lyase; Provisional
Probab=28.36 E-value=38 Score=28.89 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=25.5
Q ss_pred HHHHHhHHhcC-CCCCHHHHHHhcCCCCCCce
Q 043533 15 GQAQLYKLIHG-RAITLSELVSALDIQPTKTT 45 (301)
Q Consensus 15 ~~l~lF~~L~~-~p~t~~elA~~~~~~~~~l~ 45 (301)
+..-|+..|.. .|.|.++||+.+|.+.+.++
T Consensus 23 ~~~~llr~la~G~pvt~~~lA~~~~~~~~~v~ 54 (206)
T PRK13239 23 LLVPLLRLLAKGRPVSVTTLAAALGWPVEEVE 54 (206)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHH
Confidence 44556777775 69999999999999998887
No 488
>PF09959 DUF2193: Uncharacterized protein conserved in archaea (DUF2193); InterPro: IPR018694 This family of various hypothetical archaeal proteins has no known function
Probab=28.36 E-value=1.8e+02 Score=27.44 Aligned_cols=86 Identities=16% Similarity=0.190 Sum_probs=55.4
Q ss_pred cchhhHHHHHhhhcCCCCchhHHhhCC-ChhHHhh-cCchHHH---HHHHHhhcccccchHHHHHhhhhhcccCCCeEEE
Q 043533 81 FFVAPFQSLSSWFKGTELTLWETVHGI-KFWEFMN-QNPAINQ---RFNEAMASDSEIMTSFVVKSECKQIFEGLGSLVD 155 (301)
Q Consensus 81 ~~~~~~~~L~~~l~~g~~~~~~~~~g~-~~~e~~~-~~~~~~~---~f~~am~~~~~~~~~~~~~~~~~~~~~~~~~vlD 155 (301)
.++.....|.+.+|-.. .||-..+.- ..-|.+. +||.+.+ .|.++.......+..+.+ +.+. +|-++.+|+|
T Consensus 66 aHyeiL~~LT~tvrPeD-DPFVEhyQTP~ilEILy~eD~~F~ks~~kfi~~I~~sealIg~E~~-Rryg-GFYGpTcVvD 142 (499)
T PF09959_consen 66 AHYEILKSLTDTVRPED-DPFVEHYQTPAILEILYEEDPAFRKSVEKFIEAIGKSEALIGKESA-RRYG-GFYGPTCVVD 142 (499)
T ss_pred HHHHHHHHHhcccCCCC-CchHhhccccHHHHHHHhcCHHHHHHHHHHHHHHhhhHHHhhHHHH-HHhc-CccCCceeee
Confidence 45777888999998765 566554442 3344443 4665544 455544444445556677 7776 6899999999
Q ss_pred ecCCccHHHHHHHH
Q 043533 156 VGGGNVSFSRIISE 169 (301)
Q Consensus 156 vGgG~G~~~~~l~~ 169 (301)
..--.|..+..+.+
T Consensus 143 FAliPGSTsNVVN~ 156 (499)
T PF09959_consen 143 FALIPGSTSNVVNQ 156 (499)
T ss_pred eeecCCchHHHHHH
Confidence 88777776665544
No 489
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=28.33 E-value=84 Score=29.45 Aligned_cols=40 Identities=18% Similarity=0.376 Sum_probs=27.6
Q ss_pred HHHHHhhhhhcccCCCeEEEecCCcc-----HHHHHHHHHCCCCeEE
Q 043533 136 SFVVKSECKQIFEGLGSLVDVGGGNV-----SFSRIISEAFPGIKCT 177 (301)
Q Consensus 136 ~~~~~~~~~~~~~~~~~vlDvGgG~G-----~~~~~l~~~~P~~~~~ 177 (301)
+..+ +.+| .+.+.--+-.+||||| .++..|...||+....
T Consensus 90 r~~~-E~cd-~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~~~~~ 134 (379)
T cd02190 90 RKAA-EKCD-SLQSFFILHSLGGGTGSGLGTYVLELLADEFPEVYRF 134 (379)
T ss_pred HHHH-hhCc-CcceEEEEeecCCCcchhHHHHHHHHHHHhcCccceE
Confidence 4455 6666 4677788999999998 3455566678875433
No 490
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=28.18 E-value=2e+02 Score=25.61 Aligned_cols=86 Identities=13% Similarity=0.067 Sum_probs=50.3
Q ss_pred ccCCCeEEEecCC-ccHHHHHHHHHCCCCe-EEEeec-hHHHhcCCCCCCe-EEEeCCCCC-------CCCcchhHHH--
Q 043533 147 FEGLGSLVDVGGG-NVSFSRIISEAFPGIK-CTVLDL-PHAVANLPEADNL-KYIAGDMLR-------FIPPANAFLF-- 213 (301)
Q Consensus 147 ~~~~~~vlDvGgG-~G~~~~~l~~~~P~~~-~~~~Dl-p~~~~~a~~~~ri-~~~~~D~~~-------~~p~~D~i~~-- 213 (301)
+....+||.+|+| .|..+..++++. +++ +++.+. ++..+.+++. .+ .++..+-.. +-..+|+++-
T Consensus 157 ~~~g~~vlI~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~ 234 (334)
T cd08234 157 IKPGDSVLVFGAGPIGLLLAQLLKLN-GASRVTVAEPNEEKLELAKKL-GATETVDPSREDPEAQKEDNPYGFDVVIEAT 234 (334)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHh-CCeEEecCCCCCHHHHHHhcCCCCcEEEECC
Confidence 4556788888765 366777778776 455 666665 5544443321 11 122111000 1112566653
Q ss_pred ---HHHHHHHHhcccCCCCcEEEEEee
Q 043533 214 ---KILKKRREAIASNGERGKVIIIDI 237 (301)
Q Consensus 214 ---~iL~~~~~aL~p~~~gg~l~i~e~ 237 (301)
..+..+.+.|++ +|+++.+..
T Consensus 235 ~~~~~~~~~~~~l~~---~G~~v~~g~ 258 (334)
T cd08234 235 GVPKTLEQAIEYARR---GGTVLVFGV 258 (334)
T ss_pred CChHHHHHHHHHHhc---CCEEEEEec
Confidence 678888999999 899887754
No 491
>PF01358 PARP_regulatory: Poly A polymerase regulatory subunit; InterPro: IPR000176 This family contains viral proteins that are bifunctional, acting as both an mRNA cap-specific RNA 2'-O-methyltransferase, which methylates the ribose 2' OH group of the first transcribed nucleotide, thereby producing a 2'-o-methylpurine cap and a poly(A) polymerase processivity factor which binds to Poly(A) but has no catalytic activity. The structure of this protein is known [].; GO: 0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity, 0006370 mRNA capping, 0006397 mRNA processing; PDB: 4DCG_A 1B42_A 3ERC_A 1AV6_A 2VP3_A 1JTF_A 1JTE_A 1VP3_A 3ER9_A 1P39_A ....
Probab=28.13 E-value=74 Score=28.60 Aligned_cols=53 Identities=21% Similarity=0.342 Sum_probs=34.7
Q ss_pred CCCeEEEecCCccHHHHHHHHHCCCCe----EEEeechHHHhcCCCCCCeEEEeCCCC
Q 043533 149 GLGSLVDVGGGNVSFSRIISEAFPGIK----CTVLDLPHAVANLPEADNLKYIAGDML 202 (301)
Q Consensus 149 ~~~~vlDvGgG~G~~~~~l~~~~P~~~----~~~~Dlp~~~~~a~~~~ri~~~~~D~~ 202 (301)
+...||=+|.+.|....-|.+.||+++ .+.+|-..-....++-++|+++. ++|
T Consensus 58 ~~~~VVYiGsApG~Hi~~L~~lf~~~~~~i~wvLiDp~~f~~~l~~l~~v~l~~-~ff 114 (294)
T PF01358_consen 58 GPVTVVYIGSAPGTHIPFLFDLFPDLKVPIKWVLIDPRPFCISLEELSNVTLIQ-RFF 114 (294)
T ss_dssp T-EEEEEES-SS-HHHHHHHHHHHHTT--EEEEEEESS---GGGTT-TTEEEEE-S--
T ss_pred CceEEEEecCCCcchHHHHHHHHHhcCCceEEEEECCcchhhhhcccCcEEeeh-hhC
Confidence 346899999999999999999999865 99999833333444445577776 454
No 492
>PHA03108 poly(A) polymerase small subunit; Provisional
Probab=28.12 E-value=1.6e+02 Score=26.38 Aligned_cols=81 Identities=15% Similarity=0.214 Sum_probs=55.0
Q ss_pred CCeEEEecCCccHHHHHHHHHCCC----CeEEEeechHHHhcCCCCCCeEEEeCCCCCCCCcchhHHHHHHHHHHHhccc
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPG----IKCTVLDLPHAVANLPEADNLKYIAGDMLRFIPPANAFLFKILKKRREAIAS 225 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~----~~~~~~Dlp~~~~~a~~~~ri~~~~~D~~~~~p~~D~i~~~iL~~~~~aL~p 225 (301)
+..||=+|.+.|....-|...+++ ++.+.+|-..-........+|+++. +++++ .-++..++.+.+
T Consensus 61 g~~VVYiGSApG~HI~~L~~lf~~lg~~ikw~LiDp~~h~~~Le~l~nV~Li~-~f~de---------~~i~~~r~~~~~ 130 (300)
T PHA03108 61 GSTIVYIGSAPGTHIRYLRDHFYSLGVVIKWMLIDGRKHDPILNGLRDVTLVT-RFVDE---------AYLRRLKKQLHP 130 (300)
T ss_pred CceEEEecCCCCccHHHHHHHHHhcCCCeEEEEECCCcccHhhcCCCcEEeeH-hhcCH---------HHHHHHHHhccC
Confidence 349999999999999999998887 5899999733223333345677665 35421 235667777777
Q ss_pred CCCCcEEEEEeeeeCCCc
Q 043533 226 NGERGKVIIIDIVINAEE 243 (301)
Q Consensus 226 ~~~gg~l~i~e~~~~~~~ 243 (301)
.-.++|.|.-..+++
T Consensus 131 ---~~illISDIRS~~~g 145 (300)
T PHA03108 131 ---SKIILISDIRSKRGG 145 (300)
T ss_pred ---CCEEEEEeecccCCC
Confidence 467777777554433
No 493
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=28.06 E-value=88 Score=27.83 Aligned_cols=134 Identities=8% Similarity=0.055 Sum_probs=68.5
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------------------CCCeEEEeCCCCCCC
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL-PHAVANLPE-----------------------ADNLKYIAGDMLRFI 205 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~-----------------------~~ri~~~~~D~~~~~ 205 (301)
..+|.=||+|.=..+++..-..-+.+++++|. ++.++.+.+ ..++++. .|. +..
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~~ 81 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDL-EDL 81 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCH-HHh
Confidence 35677888875443333222233568999998 555544221 0234433 233 233
Q ss_pred CcchhHHH----------HHHHHHHHhcccCCCCcEEEEEeeeeCCCccchhhhhh---------hhhhc-hhh-----c
Q 043533 206 PPANAFLF----------KILKKRREAIASNGERGKVIIIDIVINAEEEEHELTET---------KFLFD-IVM-----S 260 (301)
Q Consensus 206 p~~D~i~~----------~iL~~~~~aL~p~~~gg~l~i~e~~~~~~~~~~~~~~~---------~~~~d-~~~-----~ 260 (301)
.++|+|+. .+++++...+++ +.+++......... . +... ..+++ ..+ +
T Consensus 82 ~~aD~Vieavpe~~~~k~~~~~~l~~~~~~----~~ii~s~ts~~~~s-~--la~~~~~~~r~~g~h~~~p~~~~~~vei 154 (292)
T PRK07530 82 ADCDLVIEAATEDETVKRKIFAQLCPVLKP----EAILATNTSSISIT-R--LASATDRPERFIGIHFMNPVPVMKLVEL 154 (292)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCCC----CcEEEEcCCCCCHH-H--HHhhcCCcccEEEeeccCCcccCceEEE
Confidence 34676655 667788888888 45555433221111 0 1000 01121 110 0
Q ss_pred cc-cCCccCCHHHHHHHHHhCCCceeEEEecCC
Q 043533 261 VN-ATGKERTESEWAKLFFDAVFSHYKITPIFG 292 (301)
Q Consensus 261 ~~-~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~ 292 (301)
+. .++.+-+.+....+++..|-+.+.+...++
T Consensus 155 ~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~pg 187 (292)
T PRK07530 155 IRGIATDEATFEAAKEFVTKLGKTITVAEDFPA 187 (292)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCeEEEecCcCC
Confidence 00 122334556678899999998887766665
No 494
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=27.96 E-value=1.7e+02 Score=27.70 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=34.6
Q ss_pred eEEEecCCccHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEeCCCCC
Q 043533 152 SLVDVGGGNVSFSRIISEAF--PGIKCTVLDL-PHAVANLPEADNLKYIAGDMLR 203 (301)
Q Consensus 152 ~vlDvGgG~G~~~~~l~~~~--P~~~~~~~Dl-p~~~~~a~~~~ri~~~~~D~~~ 203 (301)
+|+=+|+ |.++..+++.. -+.+++++|. ++.++.+++...+.++.||..+
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~ 54 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSS 54 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCC
Confidence 3555555 67777777642 3568999998 7777666543568888899875
No 495
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=27.79 E-value=1.1e+02 Score=19.88 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=20.4
Q ss_pred HHHHHhHHhcCCCCCHHHHHHhcCCCCCCc
Q 043533 15 GQAQLYKLIHGRAITLSELVSALDIQPTKT 44 (301)
Q Consensus 15 ~~l~lF~~L~~~p~t~~elA~~~~~~~~~l 44 (301)
.++|-||.= ...|.+|||+.+|++...+
T Consensus 13 ~~~GYfd~P--R~~tl~elA~~lgis~st~ 40 (53)
T PF04967_consen 13 YELGYFDVP--RRITLEELAEELGISKSTV 40 (53)
T ss_pred HHcCCCCCC--CcCCHHHHHHHhCCCHHHH
Confidence 466666543 3599999999999976543
No 496
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=27.63 E-value=77 Score=27.85 Aligned_cols=87 Identities=13% Similarity=0.045 Sum_probs=50.1
Q ss_pred CCCeEEEecCC-ccHHHHHHHHHCCCCe-EEEeec-hHHHhcCCC-CCCeEEEeCCCCC---CC-C--cchhHHH-----
Q 043533 149 GLGSLVDVGGG-NVSFSRIISEAFPGIK-CTVLDL-PHAVANLPE-ADNLKYIAGDMLR---FI-P--PANAFLF----- 213 (301)
Q Consensus 149 ~~~~vlDvGgG-~G~~~~~l~~~~P~~~-~~~~Dl-p~~~~~a~~-~~ri~~~~~D~~~---~~-p--~~D~i~~----- 213 (301)
...+||=+|+| .|..+..+++.. +.+ ++++|. ++-.+.+++ +....+...+..+ .. + .+|+++-
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~-G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~ 198 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAA-GAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGAT 198 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCCh
Confidence 45677777753 455667777776 554 888886 555544443 1111110111100 01 1 2565553
Q ss_pred HHHHHHHHhcccCCCCcEEEEEeeee
Q 043533 214 KILKKRREAIASNGERGKVIIIDIVI 239 (301)
Q Consensus 214 ~iL~~~~~aL~p~~~gg~l~i~e~~~ 239 (301)
..++.+.+.+++ +|+++++-...
T Consensus 199 ~~~~~~~~~l~~---~G~iv~~G~~~ 221 (280)
T TIGR03366 199 AAVRACLESLDV---GGTAVLAGSVF 221 (280)
T ss_pred HHHHHHHHHhcC---CCEEEEeccCC
Confidence 678899999999 89999887543
No 497
>PF00126 HTH_1: Bacterial regulatory helix-turn-helix protein, lysR family; InterPro: IPR000847 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family, the lysR family, groups together a range of proteins, including ampR, catM, catR, cynR, cysB, gltC, iciA, ilvY, irgB, lysR, metR, mkaC, mleR, nahR, nhaR, nodD, nolR, oxyR, pssR, rbcR, syrM, tcbR, tfdS and trpI [, , , , ]. The majority of these proteins appear to be transcription activators and most are known to negatively regulate their own expression. All possess a potential HTH DNA-binding motif towards their N-termini.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3T1B_D 3SZP_A 1O7L_C 1B9N_A 1B9M_A 3FZJ_J 3FXR_B 3FXQ_A 3FXU_A 2IJL_B ....
Probab=27.49 E-value=17 Score=23.95 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=33.2
Q ss_pred HHHHhHHhcCCCCCHHHHHHhcCCCCCCce--e------------ecCCCeEEcChhcc
Q 043533 16 QAQLYKLIHGRAITLSELVSALDIQPTKTT--V------------NGQEEAYGLTAAST 60 (301)
Q Consensus 16 ~l~lF~~L~~~p~t~~elA~~~~~~~~~l~--v------------e~~~~~y~~t~~s~ 60 (301)
++.+|..+.+ -.++..-|+.+++++..+. | ++.++.+.+|+.++
T Consensus 3 ~l~~f~~v~~-~gs~~~AA~~l~is~~~vs~~i~~LE~~lg~~Lf~r~~~~~~lT~~G~ 60 (60)
T PF00126_consen 3 QLRYFLAVAE-TGSISAAAEELGISQSAVSRQIKQLEEELGVPLFERSGRGLRLTEAGE 60 (60)
T ss_dssp HHHHHHHHHH-HSSHHHHHHHCTSSHHHHHHHHHHHHHHHTS-SEEECSSSEEE-HHHH
T ss_pred HHHHHHHHHH-hCCHHHHHHHhhccchHHHHHHHHHHHHhCCeEEEECCCCeeEChhhC
Confidence 5678888875 3499999999999998887 1 56666788888763
No 498
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=27.25 E-value=31 Score=27.75 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=26.5
Q ss_pred CCCCHHHHHHhcCCCCCCce-----------e--ec-CCCeEEcChhc
Q 043533 26 RAITLSELVSALDIQPTKTT-----------V--NG-QEEAYGLTAAS 59 (301)
Q Consensus 26 ~p~t~~elA~~~~~~~~~l~-----------v--e~-~~~~y~~t~~s 59 (301)
++.|+++||+..++++.+|. | .+ .+|.|.++.-.
T Consensus 24 ~~~s~~~IA~~~~is~~~L~kil~~L~kaGlV~S~rG~~GGy~Lar~~ 71 (150)
T COG1959 24 GPVSSAEIAERQGISPSYLEKILSKLRKAGLVKSVRGKGGGYRLARPP 71 (150)
T ss_pred CcccHHHHHHHhCcCHHHHHHHHHHHHHcCCEEeecCCCCCccCCCCh
Confidence 38999999999999999998 2 23 36778776644
No 499
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=27.16 E-value=35 Score=32.05 Aligned_cols=48 Identities=10% Similarity=0.250 Sum_probs=35.6
Q ss_pred CCCeEEEeCCCCC---CCCc--chhHHH-------------HHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 043533 191 ADNLKYIAGDMLR---FIPP--ANAFLF-------------KILKKRREAIASNGERGKVIIIDIVINA 241 (301)
Q Consensus 191 ~~ri~~~~~D~~~---~~p~--~D~i~~-------------~iL~~~~~aL~p~~~gg~l~i~e~~~~~ 241 (301)
.+||+++.+++.+ ..|. +|.+++ +.++++.++++| ||+|+.=....+.
T Consensus 274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~p---gaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARP---GARVLWRSAAVPP 339 (380)
T ss_pred CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCC---CCEEEEeeCCCCC
Confidence 5889999888765 2432 665554 889999999999 8999887665443
No 500
>PRK06847 hypothetical protein; Provisional
Probab=27.16 E-value=81 Score=28.87 Aligned_cols=32 Identities=25% Similarity=0.407 Sum_probs=26.2
Q ss_pred CCeEEEecCCccHHHHHHHHHCCCCeEEEeec
Q 043533 150 LGSLVDVGGGNVSFSRIISEAFPGIKCTVLDL 181 (301)
Q Consensus 150 ~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl 181 (301)
..+|+=||+|.+.++.++.-+.-+++++++|.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~ 35 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEI 35 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEec
Confidence 46899999999988877666555788999986
Done!