BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043535
(881 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 210 bits (535), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 210/794 (26%), Positives = 346/794 (43%), Gaps = 113/794 (14%)
Query: 63 GSNTYKKPPT-ESFFSFVVDTFKSFTVLILFVCAILS-LAFGL-----------NLFXXX 109
G N PPT + F F F++L L++ AIL LA+G+ NL+
Sbjct: 51 GPNALTPPPTTPEWVKFCRQLFGGFSML-LWIGAILCFLAYGIQAATEEEPQNDNLYLGV 109
Query: 110 XXXXXXXXXX--KYMQNKKFEKLLSKVSNSI--QVDVVRNKRRQQILLSNVVVGDVICLK 165
Y Q K K++ N + Q V+RN + I VVVGD++ +K
Sbjct: 110 VLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVK 169
Query: 166 IGDQVPAD-------GIFLDGHSLQIQESDHNVEVN-SSQNPF-----LLSGTKVVDGYG 212
GD++PAD G +D SL + + +++NP T V+G
Sbjct: 170 GGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIAFFSTNCVEGTA 229
Query: 213 RMLATAVGMNTTWGQIMRQTSYNTSEWTLLKARVRKLTSLVDLIG--LAITFSGLLMILD 270
R + G T G+I S T + A + ++ + L ++F L +IL+
Sbjct: 230 RGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIEHFIHIITGVAVFLGVSFFILSLILE 289
Query: 271 ---LNAVVNLI------IPEGLPLAVTVTIAYSMKRLMIDHAMVRKLSACETMGSATVIC 321
L AV+ LI +PEGL VTV + + KR+ + +V+ L A ET+GS + IC
Sbjct: 290 YTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTIC 349
Query: 322 TDKTGTLTLNQMKGAADHSN--IAPKVVELIQQGFALNTTAGFY---KRTXXXXXXXXXX 376
+DKTGTLT N+M A S+ I Q G + + T+ + R
Sbjct: 350 SDKTGTLTQNRMTVAHMWSDNQIHEADTTENQSGVSFDKTSATWLALSRIAGLCNRAVFQ 409
Query: 377 XXXXXKAILSWPILGMSMD-------------MEQIRQSCVILQVEAFNSHRKQSRVMMR 423
IL + G + + ++++R+ + FNS K ++ +
Sbjct: 410 ANQENLPILKRAVAGDASESALLKCIELCCGSVKEMRERYTKIVEIPFNSTNKY-QLSIH 468
Query: 424 KKADNTVHVH---WKGAAEIILAMCSSYYDASGNVKHLEVGARERFEQIIQGMAAGSLQC 480
K + H KGA E IL CSS G + L+ ++ F+ + +
Sbjct: 469 KNPNTAEPRHLLVMKGAPERILDRCSSIL-IHGKEQPLDEELKDAFQNAYLELGGLGERV 527
Query: 481 LAFAH-----KQVP------VPXXXXXXXXXXXXXXXXXKDPCRPGLKKAVEDCQYAGVN 529
L F H +Q P DP R + AV C+ AG+
Sbjct: 528 LGFCHLFLPDEQFPEGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIK 587
Query: 530 IKMITGDNIFTAKAIATQCGILK--------------------------------PEFRN 557
+ M+TGD+ TAKAIA GI+ + ++
Sbjct: 588 VIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKD 647
Query: 558 YTEE--EKMEKVEKIYVMARASPDDKLAMVKCLKLKGHVVAVTGNGIKDAPALEEANVGL 615
T E + + K V AR SP KL +V+ + +G +VAVTG+G+ D+PA ++A++G+
Sbjct: 648 MTSEQLDDILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPASKKADIGV 707
Query: 616 SMGIQGTAVAKESSDIIILDDNFATAVTLLNWGRCVYVNIQKFIQFHLTISVSSVLFNFL 675
+MGI G+ V+K+++D+I+LDDNFA+ VT + GR ++ N++K I + LT ++ + +
Sbjct: 708 AMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLI 767
Query: 676 AAVLVGKNPLTAVQLLWMNLIVLTLGALALVTEQPTKELMEKPPVRLTEPLITNVMWRNL 735
+ PL V +L ++L + A++L EQ ++M++ P P ++ L
Sbjct: 768 FIIANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQP---RNPKTDKLVNEQL 824
Query: 736 LAQAFYQIAVLLTL 749
++ A+ QI ++ L
Sbjct: 825 ISMAYGQIGMIQAL 838
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 207 bits (527), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 209/794 (26%), Positives = 345/794 (43%), Gaps = 113/794 (14%)
Query: 63 GSNTYKKPPT-ESFFSFVVDTFKSFTVLILFVCAILS-LAFGL-----------NLFXXX 109
G N PPT + F F F++L L++ AIL LA+G+ NL+
Sbjct: 45 GPNALTPPPTTPEWVKFCRQLFGGFSML-LWIGAILCFLAYGIQAATEEEPQNDNLYLGV 103
Query: 110 XXXXXXXXXX--KYMQNKKFEKLLSKVSNSI--QVDVVRNKRRQQILLSNVVVGDVICLK 165
Y Q K K++ N + Q V+RN + I VVVGD++ +K
Sbjct: 104 VLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVK 163
Query: 166 IGDQVPAD-------GIFLDGHSLQIQESDHNVEVN-SSQNPF-----LLSGTKVVDGYG 212
GD++PAD G +D SL + + +++NP T V+G
Sbjct: 164 GGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIAFFSTNCVEGTA 223
Query: 213 RMLATAVGMNTTWGQIMRQTSYNTSEWTLLKARVRKLTSLVDLIG--LAITFSGLLMILD 270
R + G T G+I S T + A + ++ + L ++F L +IL+
Sbjct: 224 RGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIEHFIHIITGVAVFLGVSFFILSLILE 283
Query: 271 ---LNAVVNLI------IPEGLPLAVTVTIAYSMKRLMIDHAMVRKLSACETMGSATVIC 321
L AV+ LI +PEGL VTV + + KR+ + +V+ L A ET+GS + IC
Sbjct: 284 YTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTIC 343
Query: 322 TDKTGTLTLNQMKGAADHSN--IAPKVVELIQQGFALNTTAGFY---KRTXXXXXXXXXX 376
+ KTGTLT N+M A S+ I Q G + + T+ + R
Sbjct: 344 SXKTGTLTQNRMTVAHMWSDNQIHEADTTENQSGVSFDKTSATWLALSRIAGLCNRAVFQ 403
Query: 377 XXXXXKAILSWPILGMSMD-------------MEQIRQSCVILQVEAFNSHRKQSRVMMR 423
IL + G + + ++++R+ + FNS K ++ +
Sbjct: 404 ANQENLPILKRAVAGDASESALLKCIELCCGSVKEMRERYTKIVEIPFNSTNKY-QLSIH 462
Query: 424 KKADNTVHVH---WKGAAEIILAMCSSYYDASGNVKHLEVGARERFEQIIQGMAAGSLQC 480
K + H KGA E IL CSS G + L+ ++ F+ + +
Sbjct: 463 KNPNTAEPRHLLVMKGAPERILDRCSSIL-IHGKEQPLDEELKDAFQNAYLELGGLGERV 521
Query: 481 LAFAH-----KQVP------VPXXXXXXXXXXXXXXXXXKDPCRPGLKKAVEDCQYAGVN 529
L F H +Q P DP R + AV C+ AG+
Sbjct: 522 LGFCHLFLPDEQFPEGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIK 581
Query: 530 IKMITGDNIFTAKAIATQCGILK--------------------------------PEFRN 557
+ M+TGD+ TAKAIA GI+ + ++
Sbjct: 582 VIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKD 641
Query: 558 YTEE--EKMEKVEKIYVMARASPDDKLAMVKCLKLKGHVVAVTGNGIKDAPALEEANVGL 615
T E + + K V AR SP KL +V+ + +G +VAVTG+G+ D+PA ++A++G+
Sbjct: 642 MTSEQLDDILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPASKKADIGV 701
Query: 616 SMGIQGTAVAKESSDIIILDDNFATAVTLLNWGRCVYVNIQKFIQFHLTISVSSVLFNFL 675
+MGI G+ V+K+++D+I+LDDNFA+ VT + GR ++ N++K I + LT ++ + +
Sbjct: 702 AMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLI 761
Query: 676 AAVLVGKNPLTAVQLLWMNLIVLTLGALALVTEQPTKELMEKPPVRLTEPLITNVMWRNL 735
+ PL V +L ++L + A++L EQ ++M++ P P ++ L
Sbjct: 762 FIIANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQP---RNPKTDKLVNEQL 818
Query: 736 LAQAFYQIAVLLTL 749
++ A+ QI ++ L
Sbjct: 819 ISMAYGQIGMIQAL 832
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 202 bits (514), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 213/797 (26%), Positives = 350/797 (43%), Gaps = 119/797 (14%)
Query: 63 GSNTYKKPPT-ESFFSFVVDTFKSFTVLILFVCAILS-LAFGL-----------NLFXXX 109
G N+ PPT + F F F++L L++ AIL LA+G+ NL+
Sbjct: 81 GPNSLTPPPTTPEWIKFCRQLFGGFSIL-LWIGAILCFLAYGIQAATEDEPANDNLYLGV 139
Query: 110 XXXXXXXXXX--KYMQNKKFEKLLSKVSNSI--QVDVVRNKRRQQILLSNVVVGDVICLK 165
Y Q K +++ N + Q V+R+ + I VV GD++ +K
Sbjct: 140 VLSTVVIVTGCFSYYQEAKSSRIMDSFKNMVPQQALVIRDGEKSTINAEFVVAGDLVEVK 199
Query: 166 IGDQVPADGIFLDGHSLQIQESDHNVEVN--------SSQNPF-----LLSGTKVVDGYG 212
GD++PAD + H ++ S E SS+NP T V+G
Sbjct: 200 GGDRIPADLRIISAHGCKVDNSSLTGESEPQTRSPEFSSENPLETRNIAFFSTNCVEGTA 259
Query: 213 RMLATAVGMNTTWGQIMRQTSYNTSEWTLLKARVRKLTSLVDLIG--LAITFSGLLMILD 270
R + G T G+I S T + + ++ + L ++F L +IL
Sbjct: 260 RGVVVYTGDRTVMGRIATLASGLEVGRTPIAIEIEHFIHIITGVAVFLGVSFFILSLILG 319
Query: 271 ---LNAVVNLI------IPEGLPLAVTVTIAYSMKRLMIDHAMVRKLSACETMGSATVIC 321
L AV+ LI +PEGL VTV + + KR+ + +V+ L A ET+GS + IC
Sbjct: 320 YSWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTIC 379
Query: 322 TDKTGTLTLNQMKGAADHSNIAPKVVELI----QQGFALNTTAGFYK---RTXXXXXXXX 374
+DKTGTLT N+M A H ++ E Q G A + T+ + R
Sbjct: 380 SDKTGTLTQNRMTVA--HMWFDNQIHEADTTENQSGAAFDKTSATWSALSRIAALCNRAV 437
Query: 375 XXXXXXXKAILSWPILGMSMD---MEQIRQSCVILQ---------VE-AFNSHRK-QSRV 420
IL + G + + ++ I C +Q VE FNS K Q +
Sbjct: 438 FQAGQDNVPILKRSVAGDASESALLKCIELCCGSVQGMRDRNPKIVEIPFNSTNKYQLSI 497
Query: 421 MMRKKADNTVHVH-WKGAAEIILAMCSSYYDASGNVKHLEVGARERFEQIIQGMAAGSLQ 479
+K+ + ++ KGA E IL CS+ +G + L+ +E F+ + +
Sbjct: 498 HENEKSSESRYLLVMKGAPERILDRCSTIL-LNGAEEPLKEDMKEAFQNAYLELGGLGER 556
Query: 480 CLAFAHKQVPVPXXXXXXXXXXXXXXXXXKDPC-----------RPGLKKAVEDCQYAGV 528
L F H +P D C R + AV C+ AG+
Sbjct: 557 VLGFCHFALPEDKYNEGYPFDADEPNFPTTDLCFVGLMAMIDPPRAAVPDAVGKCRSAGI 616
Query: 529 NIKMITGDNIFTAKAIATQCGILK--------------------------------PEFR 556
+ M+TGD+ TAKAIA GI+ + +
Sbjct: 617 KVIMVTGDHPITAKAIAKGVGIISEGNETIEDIAARLNIPIGQVNPRDAKACVVHGSDLK 676
Query: 557 NYTEE--EKMEKVEKIYVMARASPDDKLAMVKCLKLKGHVVAVTGNGIKDAPALEEANVG 614
+ + E + + V AR SP KL +V+ + +G +VAVTG+G+ D+PAL++A++G
Sbjct: 677 DLSTEVLDDILHYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIG 736
Query: 615 LSMGIQGTAVAKESSDIIILDDNFATAVTLLNWGRCVYVNIQKFIQFHLTISVSSVLFNF 674
++MGI G+ V+K+++D+I+LDDNFA+ VT + GR ++ N++K I + LT ++ + F
Sbjct: 737 VAMGISGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEIT-PF 795
Query: 675 LAAVLVGKNPLT--AVQLLWMNLIVLTLGALALVTEQPTKELMEKPPVRLTEPLITNVMW 732
L ++G PL V +L ++L + A++L EQ ++M++ P P ++
Sbjct: 796 L-VFIIGNVPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQP---RNPKTDKLVN 851
Query: 733 RNLLAQAFYQIAVLLTL 749
L++ A+ QI ++ L
Sbjct: 852 ERLISMAYGQIGMIQAL 868
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 192 bits (487), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 195/726 (26%), Positives = 311/726 (42%), Gaps = 113/726 (15%)
Query: 121 YMQNKKFEKLLSKVSNSI--QVDVVRNKRRQQILLSNVVVGDVICLKIGDQVPAD----- 173
Y Q K +++ N + Q V+R+ + QI +VVGD++ +K GD+VPAD
Sbjct: 158 YYQEFKSTNIIASFKNLVPQQATVIRDGDKFQINADQLVVGDLVEMKGGDRVPADIRILQ 217
Query: 174 --GIFLDGHSL--------QIQESDHNVEVNSSQNPFLLSGTKVVDGYGRMLATAVGMNT 223
G +D SL + E H + + F T ++G + L G T
Sbjct: 218 AQGRKVDNSSLTGESEPQTRSPECTHESPLETRNIAFF--STMCLEGTAQGLVVNTGDRT 275
Query: 224 TWGQIMRQTSYNTSEWTLLKARVRKLTSLVDLI-GLAITFSGLLMILDLN---------- 272
G+I S +E T + + VD+I GLAI F I+ +
Sbjct: 276 IIGRIASLASGVENEKTPIAIEIEHF---VDIIAGLAILFGATFFIVAMCIGYTFLRAMV 332
Query: 273 ---AVVNLIIPEGLPLAVTVTIAYSMKRLMIDHAMVRKLSACETMGSATVICTDKTGTLT 329
A+V +PEGL VTV ++ + KRL + +V+ L A ET+GS +VIC+DKTGTLT
Sbjct: 333 FFMAIVVAYVPEGLLATVTVCLSLTAKRLASKNCVVKNLEAVETLGSTSVICSDKTGTLT 392
Query: 330 LNQMKGAA----DHSNIAPKVVELIQQGF--------------ALNTTAGFYK-RTXXXX 370
N+M + +H + A + Q F L A F +
Sbjct: 393 QNRMTVSHLWFDNHIHSADTTEDQSGQTFDQSSETWRALCRVLTLCNRAAFKSGQDAVPV 452
Query: 371 XXXXXXXXXXXKAILSWPILGMSMDM---EQIRQSCVILQVEAFNSHRK-QSRVMMRKKA 426
A+L + L + M E+ + C I FNS K Q + +
Sbjct: 453 PKRIVIGDASETALLKFSELTLGNAMGYRERFPKVCEI----PFNSTNKFQLSIHTLEDP 508
Query: 427 DNTVHVH-WKGAAEIILAMCSSYYDASGNVKHLEVGARERFEQIIQGMAAGSLQCLAF-- 483
+ HV KGA E +L CSS G L+ RE F+ + + L F
Sbjct: 509 RDPRHVLVMKGAPERVLERCSSIL-IKGQELPLDEQWREAFQTAYLSLGGLGERVLGFCQ 567
Query: 484 ---AHKQVP------VPXXXXXXXXXXXXXXXXXKDPCRPGLKKAVEDCQYAGVNIKMIT 534
+ K P V DP R + AV C+ AG+ + M+T
Sbjct: 568 LYLSEKDYPPGYAFDVEAMNFPTSGLSFAGLVSMIDPPRATVPDAVLKCRTAGIRVIMVT 627
Query: 535 GDNIFTAKAIATQCGILKP--------------------------------EFRNYTEEE 562
GD+ TAKAIA GI+ + ++ E
Sbjct: 628 GDHPITAKAIAASVGIISEGSETVEDIAARLRVPVDQVNRKDARACVINGMQLKDMDPSE 687
Query: 563 KME--KVEKIYVMARASPDDKLAMVKCLKLKGHVVAVTGNGIKDAPALEEANVGLSMGIQ 620
+E + V AR SP KL +V+ + G +VAVTG+G+ D+PAL++A++G++MGI
Sbjct: 688 LVEALRTHPEMVFARTSPQQKLVIVESCQRLGAIVAVTGDGVNDSPALKKADIGVAMGIA 747
Query: 621 GTAVAKESSDIIILDDNFATAVTLLNWGRCVYVNIQKFIQFHLTISVSSVLFNFLAAVLV 680
G+ AK ++D+I+LDDNFA+ VT + GR ++ N++K I + LT ++ + + +
Sbjct: 748 GSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIPELTPYLIYITVS 807
Query: 681 GKNPLTAVQLLWMNLIVLTLGALALVTEQPTKELMEKPPVRLTEPLITNVMWRNLLAQAF 740
PL + +L++ L +++L E+ ++M +R P ++ L A ++
Sbjct: 808 VPLPLGCITILFIELCTDIFPSVSLAYEKAESDIMH---LRPRNPKRDRLVNEPLAAYSY 864
Query: 741 YQIAVL 746
+QI +
Sbjct: 865 FQIGAI 870
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 156 bits (395), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 105/332 (31%), Positives = 166/332 (50%), Gaps = 28/332 (8%)
Query: 435 KGAAEIILAMCSSYYDASGNVKHLEVGA-RERFEQIIQ--GMAAGSLQCLAFAHKQVPVP 491
KGA E ++ C+ Y G + G +E+ +I+ G +L+CLA A + P
Sbjct: 516 KGAPEGVIDRCN--YVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPK 573
Query: 492 XXXXXXXXXXXXXXXXXK----------DPCRPGLKKAVEDCQYAGVNIKMITGDNIFTA 541
DP R + +++ C+ AG+ + MITGDN TA
Sbjct: 574 REEMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTA 633
Query: 542 KAIATQCGILKP------------EFRNYTEEEKMEKVEKIYVMARASPDDKLAMVKCLK 589
AI + GI EF + E+ E + AR P K +V+ L+
Sbjct: 634 IAICRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQ 693
Query: 590 LKGHVVAVTGNGIKDAPALEEANVGLSMGIQGTAVAKESSDIIILDDNFATAVTLLNWGR 649
+ A+TG+G+ DAPAL++A +G++MG GTAVAK +S++++ DDNF+T V + GR
Sbjct: 694 SYDEITAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGR 752
Query: 650 CVYVNIQKFIQFHLTISVSSVLFNFLAAVLVGKNPLTAVQLLWMNLIVLTLGALALVTEQ 709
+Y N+++FI++ ++ +V V+ FL A L L VQLLW+NL+ L A AL
Sbjct: 753 AIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNP 812
Query: 710 PTKELMEKPPVRLTEPLITNVMWRNLLAQAFY 741
P ++M++PP EPLI+ ++ +A Y
Sbjct: 813 PDLDIMDRPPRSPKEPLISGWLFFRYMAIGGY 844
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 116/251 (46%), Gaps = 51/251 (20%)
Query: 125 KKFEKLLSKVSNSIQVDVVRNKRRQQILLSNVVVGDVICLKIGDQVPAD----------- 173
K++E + KV + + V R K R ++V GD++ + +GD+VPAD
Sbjct: 121 KEYEPEMGKVYRADRKSVQRIKAR------DIVPGDIVEVAVGDKVPADIRILSIKSTTL 174
Query: 174 ---GIFLDGHSLQIQESDHNVE----VNSSQNPFLLSGTKVVDGYGRMLATAVGMNTTWG 226
L G S+ + + V VN + L SGT + G + G++T G
Sbjct: 175 RVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIG 234
Query: 227 QIMRQTSYNTSEWTLLKARV----RKLTSLVDLIGLAITFSGLLMILDLNAVVN------ 276
+I Q + + T L+ ++ +L+ ++ LI +A+ L+ I N V+
Sbjct: 235 KIRDQMAATEQDKTPLQQKLDEFGEQLSKVISLICVAV---WLINIGHFNDPVHGGSWIR 291
Query: 277 --------------LIIPEGLPLAVTVTIAYSMKRLMIDHAMVRKLSACETMGSATVICT 322
IPEGLP +T +A +R+ +A+VR L + ET+G +VIC+
Sbjct: 292 GAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICS 351
Query: 323 DKTGTLTLNQM 333
DKTGTLT NQM
Sbjct: 352 DKTGTLTTNQM 362
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 156 bits (395), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 105/332 (31%), Positives = 166/332 (50%), Gaps = 28/332 (8%)
Query: 435 KGAAEIILAMCSSYYDASGNVKHLEVGA-RERFEQIIQ--GMAAGSLQCLAFAHKQVPVP 491
KGA E ++ C+ Y G + G +E+ +I+ G +L+CLA A + P
Sbjct: 515 KGAPEGVIDRCN--YVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPK 572
Query: 492 XXXXXXXXXXXXXXXXXK----------DPCRPGLKKAVEDCQYAGVNIKMITGDNIFTA 541
DP R + +++ C+ AG+ + MITGDN TA
Sbjct: 573 REEMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTA 632
Query: 542 KAIATQCGILKP------------EFRNYTEEEKMEKVEKIYVMARASPDDKLAMVKCLK 589
AI + GI EF + E+ E + AR P K +V+ L+
Sbjct: 633 IAICRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQ 692
Query: 590 LKGHVVAVTGNGIKDAPALEEANVGLSMGIQGTAVAKESSDIIILDDNFATAVTLLNWGR 649
+ A+TG+G+ DAPAL++A +G++MG GTAVAK +S++++ DDNF+T V + GR
Sbjct: 693 SYDEITAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGR 751
Query: 650 CVYVNIQKFIQFHLTISVSSVLFNFLAAVLVGKNPLTAVQLLWMNLIVLTLGALALVTEQ 709
+Y N+++FI++ ++ +V V+ FL A L L VQLLW+NL+ L A AL
Sbjct: 752 AIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNP 811
Query: 710 PTKELMEKPPVRLTEPLITNVMWRNLLAQAFY 741
P ++M++PP EPLI+ ++ +A Y
Sbjct: 812 PDLDIMDRPPRSPKEPLISGWLFFRYMAIGGY 843
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 116/251 (46%), Gaps = 51/251 (20%)
Query: 125 KKFEKLLSKVSNSIQVDVVRNKRRQQILLSNVVVGDVICLKIGDQVPAD----------- 173
K++E + KV + + V R K R ++V GD++ + +GD+VPAD
Sbjct: 120 KEYEPEMGKVYRADRKSVQRIKAR------DIVPGDIVEVAVGDKVPADIRILSIKSTTL 173
Query: 174 ---GIFLDGHSLQIQESDHNVE----VNSSQNPFLLSGTKVVDGYGRMLATAVGMNTTWG 226
L G S+ + + V VN + L SGT + G + G++T G
Sbjct: 174 RVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIG 233
Query: 227 QIMRQTSYNTSEWTLLKARV----RKLTSLVDLIGLAITFSGLLMILDLNAVVN------ 276
+I Q + + T L+ ++ +L+ ++ LI +A+ L+ I N V+
Sbjct: 234 KIRDQMAATEQDKTPLQQKLDEFGEQLSKVISLICVAV---WLINIGHFNDPVHGGSWIR 290
Query: 277 --------------LIIPEGLPLAVTVTIAYSMKRLMIDHAMVRKLSACETMGSATVICT 322
IPEGLP +T +A +R+ +A+VR L + ET+G +VIC+
Sbjct: 291 GAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICS 350
Query: 323 DKTGTLTLNQM 333
DKTGTLT NQM
Sbjct: 351 DKTGTLTTNQM 361
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 156 bits (395), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 105/332 (31%), Positives = 166/332 (50%), Gaps = 28/332 (8%)
Query: 435 KGAAEIILAMCSSYYDASGNVKHLEVGA-RERFEQIIQ--GMAAGSLQCLAFAHKQVPVP 491
KGA E ++ C+ Y G + G +E+ +I+ G +L+CLA A + P
Sbjct: 515 KGAPEGVIDRCN--YVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPK 572
Query: 492 XXXXXXXXXXXXXXXXXK----------DPCRPGLKKAVEDCQYAGVNIKMITGDNIFTA 541
DP R + +++ C+ AG+ + MITGDN TA
Sbjct: 573 REEMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTA 632
Query: 542 KAIATQCGILKP------------EFRNYTEEEKMEKVEKIYVMARASPDDKLAMVKCLK 589
AI + GI EF + E+ E + AR P K +V+ L+
Sbjct: 633 IAICRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQ 692
Query: 590 LKGHVVAVTGNGIKDAPALEEANVGLSMGIQGTAVAKESSDIIILDDNFATAVTLLNWGR 649
+ A+TG+G+ DAPAL++A +G++MG GTAVAK +S++++ DDNF+T V + GR
Sbjct: 693 SYDEITAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGR 751
Query: 650 CVYVNIQKFIQFHLTISVSSVLFNFLAAVLVGKNPLTAVQLLWMNLIVLTLGALALVTEQ 709
+Y N+++FI++ ++ +V V+ FL A L L VQLLW+NL+ L A AL
Sbjct: 752 AIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNP 811
Query: 710 PTKELMEKPPVRLTEPLITNVMWRNLLAQAFY 741
P ++M++PP EPLI+ ++ +A Y
Sbjct: 812 PDLDIMDRPPRSPKEPLISGWLFFRYMAIGGY 843
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 115/251 (45%), Gaps = 51/251 (20%)
Query: 125 KKFEKLLSKVSNSIQVDVVRNKRRQQILLSNVVVGDVICLKIGDQVPAD----------- 173
K++E + KV + + V R K R ++V GD++ + +GD+VPAD
Sbjct: 120 KEYEPEMGKVYRADRKSVQRIKAR------DIVPGDIVEVAVGDKVPADIRILSIKSTTL 173
Query: 174 ---GIFLDGHSLQIQESDHNVE----VNSSQNPFLLSGTKVVDGYGRMLATAVGMNTTWG 226
L G S+ + + V VN + L SGT + G + G++T G
Sbjct: 174 RVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIG 233
Query: 227 QIMRQTSYNTSEWTLLKARV----RKLTSLVDLIGLAITFSGLLMILDLNAVVN------ 276
+I Q + + T L+ ++ +L+ ++ LI +A+ L+ I N V+
Sbjct: 234 KIRDQMAATEQDKTPLQQKLDEFGEQLSKVISLICVAV---WLINIGHFNDPVHGGSWIR 290
Query: 277 --------------LIIPEGLPLAVTVTIAYSMKRLMIDHAMVRKLSACETMGSATVICT 322
IPEGLP +T +A +R+ +A+VR L + ET+G +VIC+
Sbjct: 291 GAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICS 350
Query: 323 DKTGTLTLNQM 333
KTGTLT NQM
Sbjct: 351 XKTGTLTTNQM 361
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 155 bits (392), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 105/332 (31%), Positives = 166/332 (50%), Gaps = 28/332 (8%)
Query: 435 KGAAEIILAMCSSYYDASGNVKHLEVGA-RERFEQIIQ--GMAAGSLQCLAFAHKQVPVP 491
KGA E ++ C+ Y G + G +E+ +I+ G +L+CLA A + P
Sbjct: 514 KGAPEGVIDRCN--YVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPK 571
Query: 492 XXXXXXXXXXXXXXXXXK----------DPCRPGLKKAVEDCQYAGVNIKMITGDNIFTA 541
DP R + +++ C+ AG+ + MITGDN TA
Sbjct: 572 REEMVLDDSTKFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTA 631
Query: 542 KAIATQCGILKP------------EFRNYTEEEKMEKVEKIYVMARASPDDKLAMVKCLK 589
AI + GI EF + E+ E + AR P K +V+ L+
Sbjct: 632 IAICRRIGIFGENEDVADRAYTGREFDDLPLAEQREACRRACCFARVEPTHKSKIVEYLQ 691
Query: 590 LKGHVVAVTGNGIKDAPALEEANVGLSMGIQGTAVAKESSDIIILDDNFATAVTLLNWGR 649
+ A+TG+G+ DAPAL++A +G++MG GTAVAK +S++++ DDNF+T V + GR
Sbjct: 692 SFDEITAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGR 750
Query: 650 CVYVNIQKFIQFHLTISVSSVLFNFLAAVLVGKNPLTAVQLLWMNLIVLTLGALALVTEQ 709
+Y N+++FI++ ++ +V V+ FL A L L VQLLW+NL+ L A AL
Sbjct: 751 AIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNP 810
Query: 710 PTKELMEKPPVRLTEPLITNVMWRNLLAQAFY 741
P ++M++PP EPLI+ ++ +A Y
Sbjct: 811 PDLDIMDRPPRTPKEPLISGWLFFRYMAIGGY 842
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 115/251 (45%), Gaps = 51/251 (20%)
Query: 125 KKFEKLLSKVSNSIQVDVVRNKRRQQILLSNVVVGDVICLKIGDQVPAD----------- 173
K++E + KV + + V R K R ++V GD++ + +GD+VPAD
Sbjct: 120 KEYEPEMGKVYRADRKSVQRIKAR------DIVPGDIVEVAVGDKVPADIRILTIKSTTL 173
Query: 174 ---GIFLDGHSLQIQESDHNVE----VNSSQNPFLLSGTKVVDGYGRMLATAVGMNTTWG 226
L G S+ + + V VN + L SGT + G + G+ T G
Sbjct: 174 RVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKAIGIVATTGVGTEIG 233
Query: 227 QIMRQTSYNTSEWTLLKARV----RKLTSLVDLIGLAITFSGLLMILDLNAVVN------ 276
+I Q + + T L+ ++ +L+ ++ LI +A+ L+ I N V+
Sbjct: 234 KIRDQMAATEQDKTPLQQKLDEFGEQLSKVISLICVAV---WLINIGHFNDPVHGGSWIR 290
Query: 277 --------------LIIPEGLPLAVTVTIAYSMKRLMIDHAMVRKLSACETMGSATVICT 322
IPEGLP +T +A +R+ +A+VR L + ET+G +VIC+
Sbjct: 291 GAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICS 350
Query: 323 DKTGTLTLNQM 333
DKTGTLT NQM
Sbjct: 351 DKTGTLTTNQM 361
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 133/582 (22%), Positives = 253/582 (43%), Gaps = 64/582 (10%)
Query: 139 QVDVVRNKRRQQILLSNVVVGDVICLKIGDQVPADGIFLDGHSLQIQES---DHNVEVNS 195
+ V+R+ + + + +V GD++ +K+GD +PAD L+G L++ +S ++ V
Sbjct: 131 KTKVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTK 190
Query: 196 SQNPFLLSGTKVVDGYGRMLATAVGMNTTWGQIMRQTSYNTSEWTLLKARVRKLTSLVDL 255
+ SG+ G + A G++T +G+ K LT++ +
Sbjct: 191 HPGQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKV----LTAIGNF 246
Query: 256 IGLAITFSGLLMILDL---------NAVVNLI------IPEGLPLAVTVTIAYSMKRLMI 300
+I ++ I+ + + + NL+ IP +P ++VT+A RL
Sbjct: 247 CICSIAIGMVIEIIVMYPIQRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQ 306
Query: 301 DHAMVRKLSACETMGSATVICTDKTGTLTLNQMKGAADHSNIAPKVVELIQQGFALNTTA 360
A+ ++++A E M V+C+DKTGTLTLN++ ++ +VE+ +G +
Sbjct: 307 QGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKL-------SVDKNLVEVFCKGVEKDQVL 359
Query: 361 GFYKRTXXXXXXXXXXXXXXXKAILSWPILGMSMDMEQIRQSCVILQVEAFNSHRKQSRV 420
F + + ++GM D ++ R + FN K++ +
Sbjct: 360 LF----------AAMASRVENQDAIDAAMVGMLADPKEARAGIREVHFLPFNPVDKRTAL 409
Query: 421 MMRKKADNTVHVHWKGAAEIILAMCSSYYDASGNVKHLEVGARERFEQIIQGMAAGSLQC 480
+ N V KGA E IL + + D S V II A L+
Sbjct: 410 TYIDGSGNWHRVS-KGAPEQILELAKASNDLSKKVL-----------SIIDKYAERGLRS 457
Query: 481 LAFAHKQVPVPXXXXXXXXXXXXXXXXXKDPCRPGLKKAVEDCQYAGVNIKMITGDNIFT 540
LA A + VP DP R + + GVN+KMITGD +
Sbjct: 458 LAVARQVVPEKTKESPGAPWEFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAI 517
Query: 541 AKAIATQCGI---LKP--------EFRNYTEEEKMEKVEKIYVMARASPDDKLAMVKCLK 589
K + G+ + P + N E +EK A P+ K +VK L+
Sbjct: 518 GKETGRRLGMGTNMYPSSALLGTHKDANLASIPVEELIEKADGFAGVFPEHKYEIVKKLQ 577
Query: 590 LKGHVVAVTGNGIKDAPALEEANVGLSMGIQGTAVAKESSDIIILDDNFATAVTLLNWGR 649
+ H+V +TG+G+ DAPAL++A++G+++ T A+ +SDI++ + + ++ + R
Sbjct: 578 ERKHIVGMTGDGVNDAPALKKADIGIAVA-DATDAARGASDIVLTEPGLSVIISAVLTSR 636
Query: 650 CVYVNIQKFIQFHLTISVSSVLFNFLAAVLVGKNPLTAVQLL 691
++ ++ + + ++I++ ++F F+ L+ + +A +L
Sbjct: 637 AIFQRMKNYTIYAVSITI-RIVFGFMLIALIWEFDFSAFMVL 677
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 100/203 (49%), Gaps = 29/203 (14%)
Query: 509 KDPCRPGLKKAVEDCQYAGVNIKMITGDNIFTAKAIATQCGILKPEFRNYTEEEKMEKVE 568
+DP + + + + Q +G+ I M+TGD+ TA+A+A GI K
Sbjct: 552 EDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLGIKK---------------- 595
Query: 569 KIYVMARASPDDKLAMVKCLKLKGHVVAVTGNGIKDAPALEEANVGLSMGIQGTAVAKES 628
V+A P+DK +V LK KG +VA+ G+G+ DAPAL +A++G++MG GT VA ES
Sbjct: 596 ---VVAEIMPEDKSRIVSELKDKGLIVAMAGDGVNDAPALAKADIGIAMG-TGTDVAIES 651
Query: 629 SDIIILDDNFATAVTLLNWGRCVYVNIQKFIQFHLTISV------SSVLFNFLAAVLVGK 682
+ + +L + NI++ + F +V + VL+ +L
Sbjct: 652 AGVTLLHGDLRGIAKARRLSESTMSNIRQNLFFAFIYNVLGVPLAAGVLYPLTGLLL--- 708
Query: 683 NPLTAVQLLWMNLIVLTLGALAL 705
+P+ A + ++ + + + AL L
Sbjct: 709 SPMIAAAAMALSSVSVIINALRL 731
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 97/226 (42%), Gaps = 29/226 (12%)
Query: 129 KLLSKVSNSIQVDVVRNKRRQQILLSNVVVGDVICLKIGDQVPADGIFLDGHSLQIQES- 187
KL+ + ++ I+ D +++ L NV VGD++ ++ G+++P DG +G S + ES
Sbjct: 221 KLVPESAHRIKED----GSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRSF-VDESM 275
Query: 188 --DHNVEVNSSQNPFLLSGTKVVDGYGRMLATAVGMNTTWGQIMRQTSYNTSEWTLLKAR 245
+ V + ++ T G M A VG +T +I++ S +A
Sbjct: 276 VTGEPIPVAKEASAKVIGATINQTGSFVMKALHVGSDTMLARIVQMVSDAQRS----RAP 331
Query: 246 VRKLTSLVD--LIGLAITFSGLLMIL------------DLNAVVNLII---PEGLPLAVT 288
+++L V + I + L I+ L A V+++I P L LA
Sbjct: 332 IQRLADTVSGWFVPAVILVAVLSFIVWALLGPQPALSYGLIAAVSVLIIACPCALGLATP 391
Query: 289 VTIAYSMKRLMIDHAMVRKLSACETMGSATVICTDKTGTLTLNQMK 334
++I + + +++ A E M + DKTGTLT K
Sbjct: 392 MSIMVGVGKGAQSGVLIKNAEALERMEKVNTLVVDKTGTLTEGHPK 437
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 148/324 (45%), Gaps = 27/324 (8%)
Query: 31 GGTGAVATALQTDIHGGIDGSEEDRARRQGLFGSNTYKKPPTESFFSFVVDTFKSFTVLI 90
GG LQTD G+ E + RR+ +G N K+ F F+ F I
Sbjct: 71 GGRVVPEDMLQTDTRVGLTSEEVVQRRRK--YGLNQMKEEKENHFLKFL----GFFVGPI 124
Query: 91 LFVC-AILSLAFGLNL---FXXXXXXXXXXXXXKYMQNKKFEKLLSKVSNSIQVD--VVR 144
FV LA GL F ++Q + ++ ++ ++ + V+R
Sbjct: 125 QFVMEGAAVLAAGLEDWVDFGVICGLLLLNAVVGFVQEFQAGSIVDELKKTLALKAVVLR 184
Query: 145 NKRRQQILLSNVVVGDVICLKIGDQVPADG-IFLDGHSLQIQES---DHNVEVNSSQNPF 200
+ ++I VV GD++ ++ G +PADG I D LQ+ +S ++ V+ +
Sbjct: 185 DGTLKEIEAPEVVPGDILQVEEGTIIPADGRIVTDDAFLQVDQSALTGESLAVDKHKGDQ 244
Query: 201 LLSGTKVVDGYGRMLATAVGMNTTWGQ---IMRQTSYNTSEWTLLKARVRKLTSLVDLIG 257
+ + + V G ++ TA G NT G+ ++ S + +T + + + ++ +
Sbjct: 245 VFASSAVKRGEAFVVITATGDNTFVGRAAALVNAASGGSGHFTEVLNGIGTILLILVIFT 304
Query: 258 LAITF-------SGLLMILDLNAVVNLI-IPEGLPLAVTVTIAYSMKRLMIDHAMVRKLS 309
L I + + ++ IL+ + +I +P GLP VT T+A L A+V+KLS
Sbjct: 305 LLIVWVSSFYRSNPIVQILEFTLAITIIGVPVGLPAVVTTTMAVGAAYLAKKKAIVQKLS 364
Query: 310 ACETMGSATVICTDKTGTLTLNQM 333
A E++ ++C+DKTGTLT N++
Sbjct: 365 AIESLAGVEILCSDKTGTLTKNKL 388
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 90/174 (51%), Gaps = 13/174 (7%)
Query: 510 DPCRPGLKKAVEDCQYAGVNIKMITGDNIFTAKAIATQCGILKPEFR----------NYT 559
DP R K V + + G++IKM+TGD + A+ + Q G+ + +
Sbjct: 534 DPPRHDTYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGLGTNIYNAERLGLGGGGDMP 593
Query: 560 EEEKMEKVEKIYVMARASPDDKLAMVKCLKLKGHVVAVTGNGIKDAPALEEANVGLSMGI 619
E + VE A P K +V+ L+ +G++VA+TG+G+ DAP+L++A+ G++ +
Sbjct: 594 GSEVYDFVEAADGFAEVFPQHKYNVVEILQQRGYLVAMTGDGVNDAPSLKKADTGIA--V 651
Query: 620 QGTA-VAKESSDIIILDDNFATAVTLLNWGRCVYVNIQKFIQFHLTISVSSVLF 672
+G++ A+ ++DI+ L + L R ++ + ++ + + +S+ +F
Sbjct: 652 EGSSDAARSAADIVFLAPGLGAIIDALKTSRQIFHRMYAYVVYRIALSIHLEIF 705
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 70.9 bits (172), Expect = 3e-12, Method: Composition-based stats.
Identities = 44/147 (29%), Positives = 76/147 (51%), Gaps = 21/147 (14%)
Query: 510 DPCRPGLKKAVEDCQYAGVNIKMITGDNIFTAKAIATQCGILKPEFRNYTEEEKMEKVEK 569
D RP ++A+ + G+ M+TGDN F AK +A + G L F EK EKV++
Sbjct: 143 DRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELG-LDDYFAEVLPHEKAEKVKE 201
Query: 570 IYVMARASPDDKLAMVKCLKLKGHVVAVTGNGIKDAPALEEANVGLSMGIQGTAVAKESS 629
+ + +V A+ G+G+ DAPAL +A+VG+++G GT VA E++
Sbjct: 202 VQ-------------------QKYVTAMVGDGVNDAPALAQADVGIAIG-AGTDVAVETA 241
Query: 630 DIIILDDNFATAVTLLNWGRCVYVNIQ 656
DI+++ ++ ++ R Y ++
Sbjct: 242 DIVLVRNDPRDVAAIVELSRKTYSKLE 268
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 21/158 (13%)
Query: 510 DPCRPGLKKAVEDCQYAGVNIKMITGDNIFTAKAIATQCGILKPEFRNYTEEEKMEKVEK 569
D + K AV++ + G+ + MITGDN +A+AI+ + +
Sbjct: 456 DTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL------------------- 496
Query: 570 IYVMARASPDDKLAMVKCLKLKGHVVAVTGNGIKDAPALEEANVGLSMGIQGTAVAKESS 629
V+A P K VK L+ K VVA G+GI DAPAL +A++G+++G G+ VA ES
Sbjct: 497 DLVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQADLGIAVG-SGSDVAVESG 554
Query: 630 DIIILDDNFATAVTLLNWGRCVYVNIQKFIQFHLTISV 667
DI+++ D+ V + R I++ I + L +V
Sbjct: 555 DIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNV 592
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 88/217 (40%), Gaps = 18/217 (8%)
Query: 142 VVRNKRRQQILLSNVVVGDVICLKIGDQVPADGIFLDGHSLQIQE--SDHNVEVNSSQNP 199
V+R+ + + + V VGD++ ++ G+++P DG+ ++G S + S V V S+
Sbjct: 137 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESYVDESMISGEPVPVLKSKGD 196
Query: 200 FLLSGTKVVDGYGRMLATAVGMNTTWGQIMRQTSYNTSEWTLLKARVRKLTSLVDLIGLA 259
+ T G ++ AT VG T QI++ ++ K+ + L
Sbjct: 197 EVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVLL 256
Query: 260 ITFSG------------LLMILDLNAVVNLIIPEGLPLAVTVTIAYSMKRLMIDHAMVRK 307
+ S L L AV+ + P LA + M + +++
Sbjct: 257 VAISAFIYWYFIAHAPLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGAELGILIKN 316
Query: 308 LSACETMGSATVICTDKTGTLTLNQMKGAADHSNIAP 344
A E T + DKTGTLT KG + +++ P
Sbjct: 317 ADALEVAEKVTAVIFDKTGTLT----KGKPEVTDLVP 349
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 74/143 (51%), Gaps = 21/143 (14%)
Query: 510 DPCRPGLKKAVEDCQYAGVNIKMITGDNIFTAKAIATQCGILKPEFRNYTEEEKMEKVEK 569
D RP ++A+ + G+ M+TGDN F AK +A + G L F EK EKV++
Sbjct: 143 DRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELG-LDDYFAEVLPHEKAEKVKE 201
Query: 570 IYVMARASPDDKLAMVKCLKLKGHVVAVTGNGIKDAPALEEANVGLSMGIQGTAVAKESS 629
+ + +V A+ G+G+ DAPAL +A+VG+++G GT VA E++
Sbjct: 202 VQ-------------------QKYVTAMVGDGVNDAPALAQADVGIAIG-AGTDVAVETA 241
Query: 630 DIIILDDNFATAVTLLNWGRCVY 652
DI+++ ++ ++ R Y
Sbjct: 242 DIVLVRNDPRDVAAIVELSRKTY 264
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 21/158 (13%)
Query: 510 DPCRPGLKKAVEDCQYAGVNIKMITGDNIFTAKAIATQCGILKPEFRNYTEEEKMEKVEK 569
D + K AV++ + G+ + MITGDN +A+AI+ + +
Sbjct: 534 DTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL------------------- 574
Query: 570 IYVMARASPDDKLAMVKCLKLKGHVVAVTGNGIKDAPALEEANVGLSMGIQGTAVAKESS 629
V+A P K VK L+ K VVA G+GI DAPAL +A++G+++G G+ VA ES
Sbjct: 575 DLVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQADLGIAVG-SGSDVAVESG 632
Query: 630 DIIILDDNFATAVTLLNWGRCVYVNIQKFIQFHLTISV 667
DI+++ D+ V + R I++ I + L +V
Sbjct: 633 DIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNV 670
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 88/217 (40%), Gaps = 18/217 (8%)
Query: 142 VVRNKRRQQILLSNVVVGDVICLKIGDQVPADGIFLDGHSLQIQE--SDHNVEVNSSQNP 199
V+R+ + + + V VGD++ ++ G+++P DG+ ++G S + S V V S+
Sbjct: 215 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESYVDESMISGEPVPVLKSKGD 274
Query: 200 FLLSGTKVVDGYGRMLATAVGMNTTWGQIMRQTSYNTSEWTLLKARVRKLTSLVDLIGLA 259
+ T G ++ AT VG T QI++ ++ K+ + L
Sbjct: 275 EVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVLL 334
Query: 260 ITFSG------------LLMILDLNAVVNLIIPEGLPLAVTVTIAYSMKRLMIDHAMVRK 307
+ S L L AV+ + P LA + M + +++
Sbjct: 335 VAISAFIYWYFIAHAPLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGAELGILIKN 394
Query: 308 LSACETMGSATVICTDKTGTLTLNQMKGAADHSNIAP 344
A E T + DKTGTLT KG + +++ P
Sbjct: 395 ADALEVAEKVTAVIFDKTGTLT----KGKPEVTDLVP 427
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 66.2 bits (160), Expect = 6e-11, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 72/140 (51%), Gaps = 21/140 (15%)
Query: 510 DPCRPGLKKAVEDCQYAGVNIKMITGDNIFTAKAIATQCGILKPEFRNYTEEEKMEKVEK 569
D + K AV++ + G+ + MITGDN +A+AI+ + +
Sbjct: 162 DTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL------------------- 202
Query: 570 IYVMARASPDDKLAMVKCLKLKGHVVAVTGNGIKDAPALEEANVGLSMGIQGTAVAKESS 629
V+A P K VK L+ K VVA G+GI DAPAL +A++G+++G G+ VA ES
Sbjct: 203 DLVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQADLGIAVG-SGSDVAVESG 260
Query: 630 DIIILDDNFATAVTLLNWGR 649
DI+++ D+ V + R
Sbjct: 261 DIVLIRDDLRDVVAAIQLSR 280
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 66.2 bits (160), Expect = 7e-11, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 72/140 (51%), Gaps = 21/140 (15%)
Query: 510 DPCRPGLKKAVEDCQYAGVNIKMITGDNIFTAKAIATQCGILKPEFRNYTEEEKMEKVEK 569
D + K AV++ + G+ + MITGDN +A+AI+ + +
Sbjct: 162 DTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL------------------- 202
Query: 570 IYVMARASPDDKLAMVKCLKLKGHVVAVTGNGIKDAPALEEANVGLSMGIQGTAVAKESS 629
V+A P K VK L+ K VVA G+GI DAPAL +A++G+++G G+ VA ES
Sbjct: 203 DLVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQADLGIAVG-SGSDVAVESG 260
Query: 630 DIIILDDNFATAVTLLNWGR 649
DI+++ D+ V + R
Sbjct: 261 DIVLIRDDLRDVVAAIQLSR 280
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/140 (32%), Positives = 71/140 (50%), Gaps = 21/140 (15%)
Query: 510 DPCRPGLKKAVEDCQYAGVNIKMITGDNIFTAKAIATQCGILKPEFRNYTEEEKMEKVEK 569
D + K AV++ + G+ + ITGDN +A+AI+ + +
Sbjct: 142 DTLKESAKPAVQELKRXGIKVGXITGDNWRSAEAISRELNL------------------- 182
Query: 570 IYVMARASPDDKLAMVKCLKLKGHVVAVTGNGIKDAPALEEANVGLSMGIQGTAVAKESS 629
V+A P K VK L+ K VVA G+GI DAPAL +A++G+++G G+ VA ES
Sbjct: 183 DLVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQADLGIAVG-SGSDVAVESG 240
Query: 630 DIIILDDNFATAVTLLNWGR 649
DI+++ D+ V + R
Sbjct: 241 DIVLIRDDLRDVVAAIQLSR 260
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 63/130 (48%), Gaps = 29/130 (22%)
Query: 517 KKAVEDCQYAGVNIKMITGDNIFTAKAIATQCGILKPEFRNYTEEEKMEKVEKIYVMARA 576
K AV++ + G+ + ITGDN +A+AI+ + + V+A
Sbjct: 28 KPAVQELKRXGIKVGXITGDNWRSAEAISRELNL-------------------DLVIAEV 68
Query: 577 SPDDKLAMVKCLKLKGHVVAVTGNGIKDAPALEEANVGLSMGIQGTAVAKESSDIIILDD 636
P K VK L+ K VVA G+GI DAPAL +A++G+++G S DI+++ D
Sbjct: 69 LPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQADLGIAVG---------SGDIVLIRD 118
Query: 637 NFATAVTLLN 646
+ V +
Sbjct: 119 DLRDVVAAIQ 128
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 71/136 (52%), Gaps = 20/136 (14%)
Query: 510 DPCRPGLKKAVEDCQYAGVNIKMITGDNIFTAKAIATQCGILKPEFRNYTEEEKMEKVEK 569
D RP LK +E + G+ I +++GD K ++ + I ++
Sbjct: 135 DVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI-----------------QE 177
Query: 570 IYVMARASPDDKLAMVKCLKLKGHVVAVTGNGIKDAPALEEANVGLSMGIQGTAVAKESS 629
Y + SP+DK+ +++ LK G+ V + G+G+ DA AL A+V ++MG G ++K +
Sbjct: 178 YY--SNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVSVAMG-NGVDISKNVA 234
Query: 630 DIIILDDNFATAVTLL 645
DII++ ++ T + L+
Sbjct: 235 DIILVSNDIGTLLGLI 250
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 71/136 (52%), Gaps = 20/136 (14%)
Query: 510 DPCRPGLKKAVEDCQYAGVNIKMITGDNIFTAKAIATQCGILKPEFRNYTEEEKMEKVEK 569
D RP LK +E + G+ I +++GD K ++ + I ++
Sbjct: 135 DVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI-----------------QE 177
Query: 570 IYVMARASPDDKLAMVKCLKLKGHVVAVTGNGIKDAPALEEANVGLSMGIQGTAVAKESS 629
Y + SP+DK+ +++ LK G+ V + G+G+ DA AL A+V ++MG G ++K +
Sbjct: 178 YY--SNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVSVAMG-NGVDISKNVA 234
Query: 630 DIIILDDNFATAVTLL 645
DII++ ++ T + L+
Sbjct: 235 DIILVSNDIGTLLGLI 250
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 71/136 (52%), Gaps = 20/136 (14%)
Query: 510 DPCRPGLKKAVEDCQYAGVNIKMITGDNIFTAKAIATQCGILKPEFRNYTEEEKMEKVEK 569
D RP LK +E + G+ I +++GD K ++ + I ++
Sbjct: 135 DVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI-----------------QE 177
Query: 570 IYVMARASPDDKLAMVKCLKLKGHVVAVTGNGIKDAPALEEANVGLSMGIQGTAVAKESS 629
Y + SP+DK+ +++ LK G+ V + G+G+ DA AL A+V ++MG G ++K +
Sbjct: 178 YY--SNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVSVAMG-NGVDISKNVA 234
Query: 630 DIIILDDNFATAVTLL 645
DII++ ++ T + L+
Sbjct: 235 DIILVSNDIGTLLGLI 250
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 142 VVRNKRRQQILLSNVVVGDVICLKIGDQVPADGIFLDGHSLQIQE--SDHNVEVNSSQNP 199
V+R+ + + + V VGD++ ++ G+++P DG+ ++G S + S V V S+
Sbjct: 16 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESYVDESMISGEPVPVLKSKGD 75
Query: 200 FLLSGTKVVDGYGRMLATAVGMNTTWGQIMR 230
+ T G ++ AT VG T QI++
Sbjct: 76 EVFGATINNTGVLKIRATRVGGETLLAQIVK 106
>pdb|4EX6|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase Alnb
pdb|4EX7|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase In
Complex With Free Phosphate
Length = 237
Score = 34.7 bits (78), Expect = 0.27, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 14/134 (10%)
Query: 514 PGLKKAVEDCQYAGVNIKMITGDNIFTAKAIATQCGILKPEFRNYTEEEKMEKVEKIYVM 573
PG+ + ++ AG + M T A+AIA G L ++ +E+
Sbjct: 107 PGVLEGLDRLSAAGFRLAMATSKVEKAARAIAELTG-LDTRLTVIAGDDSVER------- 158
Query: 574 ARASPDDKLAMVKCLKLKGHVVAVTGNGIKDAPALEEAN---VGLSMGIQG-TAVAKESS 629
+ PD L + + L + V G+G+ DA A +G+S G+ G + + +
Sbjct: 159 GKPHPDMALHVARGLGIPPERCVVIGDGVPDAEMGRAAGMTVIGVSYGVSGPDELMRAGA 218
Query: 630 DIIILDDNFATAVT 643
D ++ D+F AVT
Sbjct: 219 DTVV--DSFPAAVT 230
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 148 RQQILLSNVVVGDVICLKIGDQVPADGIFLDGHSLQIQES---DHNVEVNSSQNPFLLSG 204
+Q+ + V GD+I + G + P DG ++GHS+ + ES + V +++G
Sbjct: 34 EEQVDVELVQRGDIIKVVPGGKFPVDGRVIEGHSM-VDESLITGEAMPVAKKPGSTVIAG 92
Query: 205 TKVVDGYGRMLATAVGMNTTWGQIMR 230
+ +G + AT VG +TT QI++
Sbjct: 93 SINQNGSLLICATHVGADTTLSQIVK 118
>pdb|1T5O|A Chain A, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
pdb|1T5O|B Chain B, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
pdb|1T5O|C Chain C, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
pdb|1T5O|D Chain D, Crystal Structure Of The Translation Initiation Factor
Eif-2b, Subunit Delta, From A. Fulgidus
Length = 351
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 580 DKLAMVKCLKLKGHVVAVTGNGIKDAPALEEANVGLSMGIQGTAVAKESSDIIILDDNFA 639
+KL +++C ++ A+ ++ APALE A + GI A +E +D+ L ++
Sbjct: 22 EKLEVIECRNVEELADAIKKLAVRGAPALEAAG---AYGIALAAREREFADVDELKEHLK 78
Query: 640 TAVTLLNWGRCVYVNI 655
A L R VN+
Sbjct: 79 KAADFLASTRPTAVNL 94
>pdb|2VOY|H Chain H, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 48
Score = 30.0 bits (66), Expect = 6.5, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 280 PEGLPLAVTVTIAYSMKRLMIDHAMVRKL 308
PEGLP +T +A +R+ +A+VR L
Sbjct: 20 PEGLPAVITTCLALGTRRMAKKNAIVRSL 48
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,234,932
Number of Sequences: 62578
Number of extensions: 837460
Number of successful extensions: 2000
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1913
Number of HSP's gapped (non-prelim): 51
length of query: 881
length of database: 14,973,337
effective HSP length: 107
effective length of query: 774
effective length of database: 8,277,491
effective search space: 6406778034
effective search space used: 6406778034
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)