BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043540
(437 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
pdb|2XN4|B Chain B, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
Length = 302
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 82/189 (43%), Gaps = 18/189 (9%)
Query: 145 SCKLKEWEAFDPIHHRWMHLPPMN---ASDCFMCADKESLAVGTELLVFGKEVHG----N 197
S L EA++ + W H+ PMN +S AVG G +V +
Sbjct: 120 STGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVG------GYDVASRQCLS 173
Query: 198 AIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLL-KSAELYNSITGT 256
+ YN TN W+ M+T R G L + GG D G L+ KS E+Y+ T
Sbjct: 174 TVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHD--GPLVRKSVEVYDPTTNA 231
Query: 257 WMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPAR 316
W ++ M+ R+ ++G YV+G G+ S L VE Y+ T KWT ++
Sbjct: 232 WRQVADMNMCRRNAGVCAVNGLLYVVG--GDDGSCNLASVEYYNPTTDKWTVVSSCMSTG 289
Query: 317 IGSDGVSVI 325
GV+VI
Sbjct: 290 RSYAGVTVI 298
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 89/229 (38%), Gaps = 27/229 (11%)
Query: 148 LKEWEAFDPIHHRWMHLPPMNASDC---FMCADKESLAVGTELLVFGKEVHGNAIYRYNL 204
++ E +D RW + + + C + AVG F + + Y+
Sbjct: 29 IRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGG----FNGSLRVRTVDSYDP 84
Query: 205 LTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMH 264
+ + W++ M R G+A L + GG D L S E YN + W ++ M+
Sbjct: 85 VKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGL-SSVEAYNIKSNEWFHVAPMN 143
Query: 265 KARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSV 324
R + G Y +GG S L+ VE Y+ T +WT I +M R G+
Sbjct: 144 TRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAG---- 199
Query: 325 ISAAGEAPPLLAVVNNELYAA-DHEKEEVRK----FDKGRKLWRTLGRL 368
+ V+NN LYA H+ VRK +D WR + +
Sbjct: 200 ----------VGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADM 238
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 226 SLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFMDGKFYVIGGI 285
+L ++ ++ GG P K ++S E Y+ W ++ + R V+M G + +GG
Sbjct: 13 NLPKLMVVVGGQAP--KAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGF 70
Query: 286 GEGSSAMLTDVEMYDLETGKWTQITDMFPAR 316
S + V+ YD +WT + +M R
Sbjct: 71 --NGSLRVRTVDSYDPVKDQWTSVANMRDRR 99
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 85/189 (44%), Gaps = 20/189 (10%)
Query: 148 LKEWEAFDPIHHRWMHL--PPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYR---Y 202
+K + ++ + W PP CA A G G EV +A+Y Y
Sbjct: 69 IKRMDCYNVVKDSWYSKLGPPTPRDSLAACA-----AEGKIYTSGGSEVGNSALYLFECY 123
Query: 203 NLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGC---DPRGKLLKSAELYNSITGTWMP 259
+ T +W T +M T RC G + + GG + G++L S E+Y+ T TW
Sbjct: 124 DTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTE 183
Query: 260 ISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGS 319
+ M +ARK VF+ K + +G G+ L +VE YD++ +W ++ M P +
Sbjct: 184 LCPMIEARKNHGLVFVKDKIFAVG--GQNGLGGLDNVEYYDIKLNEWKMVSPM-PWK--- 237
Query: 320 DGVSVISAA 328
GV+V AA
Sbjct: 238 -GVTVKCAA 245
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 92/219 (42%), Gaps = 21/219 (9%)
Query: 154 FDPIHHRWMHLPPMNASDCFM----CADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTW 209
D + W+ LPP+ ++ C DK + G +L E +++ Y+ + W
Sbjct: 83 LDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQT---EASLDSVLCYDPVAAKW 139
Query: 210 STGMTMNTPRCLFGSASL---GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKA 266
S N P ++G + G I L G D + K +YN G W ++ M
Sbjct: 140 SE--VKNLPIKVYGHNVISHNGMIYCLGGKTDDK-KCTNRVFIYNPKKGDWKDLAPMKTP 196
Query: 267 RKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVIS 326
R M GK + GG+ E + VE +DL+T KW +T+ FP S +S++S
Sbjct: 197 RSMFGVAIHKGKIVIAGGVTE--DGLSASVEAFDLKTNKWEVMTE-FPQERSS--ISLVS 251
Query: 327 AAGEAPPLLAVVNNELYAADHEKEEVR---KFDKGRKLW 362
AG + +L + + EV K++ +K W
Sbjct: 252 LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEW 290
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 14/181 (7%)
Query: 152 EAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNT--- 208
E +DP W LP + ++ S+++ + V G + + L T
Sbjct: 34 EKYDPKTQEWSFLPSITRKRRYVA----SVSLHDRIYVIGGYDGRSRLSSVECLDYTADE 89
Query: 209 ---WSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHK 265
W + MN R L G+ +LG++ ++GG D + S E Y+ W + M
Sbjct: 90 DGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDG-SRRHTSMERYDPNIDQWSMLGDMQT 148
Query: 266 ARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVI 325
AR+ V G Y +GG +G + +L VE YD TG WT +T M R G+ GV+++
Sbjct: 149 AREGAGLVVASGVIYCLGGY-DGLN-ILNSVEKYDPHTGHWTNVTPMATKRSGA-GVALL 205
Query: 326 S 326
+
Sbjct: 206 N 206
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 71/169 (42%), Gaps = 12/169 (7%)
Query: 152 EAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHG----NAIYRYNLLTN 207
E +DP +W L M + + L V + ++ G N++ +Y+ T
Sbjct: 131 ERYDPNIDQWSMLGDMQTA-----REGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTG 185
Query: 208 TWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKAR 267
W+ M T R G A L + + GG D L S E YN T +W ++SM R
Sbjct: 186 HWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHL-SSVEAYNIRTDSWTTVTSMTTPR 244
Query: 268 KMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPAR 316
+ G+ Y I G +G+S +L+ +E YD W +T M R
Sbjct: 245 CYVGATVLRGRLYAIAGY-DGNS-LLSSIECYDPIIDSWEVVTSMGTQR 291
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 59/129 (45%), Gaps = 20/129 (15%)
Query: 148 LKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLV--------FGKEVHGNAI 199
L E +DP W ++ PM A K S A G LL F H +++
Sbjct: 174 LNSVEKYDPHTGHWTNVTPM--------ATKRSGA-GVALLNDHIYVVGGFDGTAHLSSV 224
Query: 200 YRYNLLTNTWSTGMTMNTPRCLFGSASL-GEIAILAGGCDPRGKLLKSAELYNSITGTWM 258
YN+ T++W+T +M TPRC G+ L G + +AG LL S E Y+ I +W
Sbjct: 225 EAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAG--YDGNSLLSSIECYDPIIDSWE 282
Query: 259 PISSMHKAR 267
++SM R
Sbjct: 283 VVTSMGTQR 291
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 83/200 (41%), Gaps = 18/200 (9%)
Query: 197 NAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKL--LKSAELYNSIT 254
+ + +Y+ T WS ++ R S SL + + GG D R +L ++ +
Sbjct: 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADED 90
Query: 255 GTWMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFP 314
G W ++ M+ R + + YV GG +GS T +E YD +W+ + DM
Sbjct: 91 GVWYSVAPMNVRRGLAGATTLGDMIYVSGGF-DGSRRH-TSMERYDPNIDQWSMLGDMQT 148
Query: 315 ARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKLWRTLGRLPEQASS 374
AR +G ++ A+G L Y + V K+D W + A+
Sbjct: 149 AR---EGAGLVVASGVIYCLGG------YDGLNILNSVEKYDPHTGHWTN---VTPMATK 196
Query: 375 MNGWGLAFRACGDQLIVIGG 394
+G G+A D + V+GG
Sbjct: 197 RSGAGVAL--LNDHIYVVGG 214
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 10/104 (9%)
Query: 214 TMNTPRCLFGSASLG--EIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCS 271
+M PR A LG E+ ++ GG + + E Y+ T W + S+ + R+ +
Sbjct: 1 SMQGPRT---RARLGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVA 57
Query: 272 GVFMDGKFYVIGGIGEGSSAMLTDVEMYDL---ETGKWTQITDM 312
V + + YVIGG +G S L+ VE D E G W + M
Sbjct: 58 SVSLHDRIYVIGGY-DGRS-RLSSVECLDYTADEDGVWYSVAPM 99
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 78/206 (37%), Gaps = 21/206 (10%)
Query: 123 IQSGELYRLRREMGIIEHWVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLA 182
+ G +Y + G I H E ++P W + PM + +A
Sbjct: 112 VIDGHIYAVGGSHGCIHH--------SSVERYEPERDEWHLVAPMLTRRIGV-----GVA 158
Query: 183 VGTELLV----FGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCD 238
V LL F N+ Y N W MNT R G L AGG D
Sbjct: 159 VLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYD 218
Query: 239 PRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEM 298
+ +L S E Y+ T TW ++ M R GK YV+GG L VE
Sbjct: 219 GQDQL-NSVERYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGY--DGHTFLDSVEC 275
Query: 299 YDLETGKWTQITDMFPARIGSDGVSV 324
YD ++ W+++T M R G GV+V
Sbjct: 276 YDPDSDTWSEVTRMTSGRSGV-GVAV 300
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 6/128 (4%)
Query: 202 YNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCD--PRGKLLKSA-ELYNSITGTWM 258
YN +W + PR +G + GG + P G SA + YN +T W
Sbjct: 37 YNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS 96
Query: 259 PISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIG 318
P +SM R +DG Y +G G + VE Y+ E +W + M RIG
Sbjct: 97 PCASMSVPRNRIGVGVIDGHIYAVG--GSHGCIHHSSVERYEPERDEWHLVAPMLTRRIG 154
Query: 319 SDGVSVIS 326
GV+V++
Sbjct: 155 V-GVAVLN 161
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 92/248 (37%), Gaps = 39/248 (15%)
Query: 143 YFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKE-------VH 195
YF L EA++P + W+ L + + VG L G
Sbjct: 26 YFRQSLSYLEAYNPSNGSWLRLADLQVPRSGLAG----CVVGGLLYAVGGRNNSPDGNTD 81
Query: 196 GNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL-GEIAILAG--GCDPRGKLLKSAELYNS 252
+A+ YN +TN WS +M+ PR G + G I + G GC S E Y
Sbjct: 82 SSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHH----SSVERYEP 137
Query: 253 ITGTWMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDM 312
W ++ M R ++ Y +GG +G++ L E Y E +W IT M
Sbjct: 138 ERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGF-DGTN-RLNSAECYYPERNEWRMITPM 195
Query: 313 FPARIGSDGVSVISAAGEAPPLLAVVNNELYAA-----DHEKEEVRKFDKGRKLWRTLGR 367
R G+ + V++N +YAA + V ++D + W +
Sbjct: 196 NTIRSGAG--------------VCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP 241
Query: 368 LPEQASSM 375
+ S++
Sbjct: 242 MRHHRSAL 249
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 78/206 (37%), Gaps = 21/206 (10%)
Query: 123 IQSGELYRLRREMGIIEHWVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLA 182
+ G +Y + G I H E ++P W + PM + +A
Sbjct: 119 VIDGHIYAVGGSHGCIHH--------NSVERYEPERDEWHLVAPMLTRRIGV-----GVA 165
Query: 183 VGTELLV----FGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCD 238
V LL F N+ Y N W MNT R G L AGG D
Sbjct: 166 VLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYD 225
Query: 239 PRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEM 298
+ +L S E Y+ T TW ++ M R G+ YV+GG L VE
Sbjct: 226 GQDQL-NSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGY--DGHTFLDSVEC 282
Query: 299 YDLETGKWTQITDMFPARIGSDGVSV 324
YD +T W+++T M R G GV+V
Sbjct: 283 YDPDTDTWSEVTRMTSGRSGV-GVAV 307
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 65/167 (38%), Gaps = 16/167 (9%)
Query: 152 EAFDPIHHRWMHLPPMNASDCFMCADKESLAVGT---ELLVFGKE---VHGNAIYRYNLL 205
+ ++P+ ++W PM+ + + VG + G +H N++ RY
Sbjct: 93 DCYNPMTNQWSPCAPMSVP-------RNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPE 145
Query: 206 TNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHK 265
+ W M T R G A L + GG D + L SAE Y W I++M+
Sbjct: 146 RDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNR-LNSAECYYPERNEWRMITAMNT 204
Query: 266 ARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDM 312
R + Y GG L VE YD+ET WT + M
Sbjct: 205 IRSGAGVCVLHNCIYAAGGY--DGQDQLNSVERYDVETETWTFVAPM 249
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 52/128 (40%), Gaps = 6/128 (4%)
Query: 202 YNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCD--PRGKLLKSA-ELYNSITGTWM 258
YN TW + PR +G + GG + P G SA + YN +T W
Sbjct: 44 YNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS 103
Query: 259 PISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIG 318
P + M R +DG Y +G G VE Y+ E +W + M RIG
Sbjct: 104 PCAPMSVPRNRIGVGVIDGHIYAVG--GSHGCIHHNSVERYEPERDEWHLVAPMLTRRIG 161
Query: 319 SDGVSVIS 326
GV+V++
Sbjct: 162 V-GVAVLN 168
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 92/244 (37%), Gaps = 31/244 (12%)
Query: 143 YFSCKLKEWEAFDPIHHRWMHLPPMNA--SDCFMCADKESL-AVGTELLVFGKEVHGNAI 199
YF L EA++P W+ L + S C L AVG +A+
Sbjct: 33 YFRQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSAL 92
Query: 200 YRYNLLTNTWSTGMTMNTPRCLFGSASL-GEIAILAG--GCDPRGKLLKSAELYNSITGT 256
YN +TN WS M+ PR G + G I + G GC S E Y
Sbjct: 93 DCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHH----NSVERYEPERDE 148
Query: 257 WMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPAR 316
W ++ M R ++ Y +GG +G++ L E Y E +W IT M R
Sbjct: 149 WHLVAPMLTRRIGVGVAVLNRLLYAVGGF-DGTN-RLNSAECYYPERNEWRMITAMNTIR 206
Query: 317 IGSDGVSVISAAGEAPPLLAVVNNELYAA-----DHEKEEVRKFDKGRKLWRTLGRLPEQ 371
G+ + V++N +YAA + V ++D + W + + +
Sbjct: 207 SGAG--------------VCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR 252
Query: 372 ASSM 375
S++
Sbjct: 253 RSAL 256
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 78/206 (37%), Gaps = 21/206 (10%)
Query: 123 IQSGELYRLRREMGIIEHWVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLA 182
+ G +Y + G I H E ++P W + PM + +A
Sbjct: 120 VIDGHIYAVGGSHGCIHH--------NSVERYEPERDEWHLVAPMLTRRIGV-----GVA 166
Query: 183 VGTELLV----FGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCD 238
V LL F N+ Y N W MNT R G L AGG D
Sbjct: 167 VLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYD 226
Query: 239 PRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEM 298
+ +L S E Y+ T TW ++ M R G+ YV+GG L VE
Sbjct: 227 GQDQL-NSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGY--DGHTFLDSVEC 283
Query: 299 YDLETGKWTQITDMFPARIGSDGVSV 324
YD +T W+++T M R G GV+V
Sbjct: 284 YDPDTDTWSEVTRMTSGRSGV-GVAV 308
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 65/167 (38%), Gaps = 16/167 (9%)
Query: 152 EAFDPIHHRWMHLPPMNASDCFMCADKESLAVGT---ELLVFGKE---VHGNAIYRYNLL 205
+ ++P+ ++W PM+ + + VG + G +H N++ RY
Sbjct: 94 DCYNPMTNQWSPCAPMSVP-------RNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPE 146
Query: 206 TNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHK 265
+ W M T R G A L + GG D + L SAE Y W I++M+
Sbjct: 147 RDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNR-LNSAECYYPERNEWRMITAMNT 205
Query: 266 ARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDM 312
R + Y GG L VE YD+ET WT + M
Sbjct: 206 IRSGAGVCVLHNCIYAAGGY--DGQDQLNSVERYDVETETWTFVAPM 250
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 52/128 (40%), Gaps = 6/128 (4%)
Query: 202 YNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCD--PRGKLLKSA-ELYNSITGTWM 258
YN TW + PR +G + GG + P G SA + YN +T W
Sbjct: 45 YNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS 104
Query: 259 PISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIG 318
P + M R +DG Y +G G VE Y+ E +W + M RIG
Sbjct: 105 PCAPMSVPRNRIGVGVIDGHIYAVG--GSHGCIHHNSVERYEPERDEWHLVAPMLTRRIG 162
Query: 319 SDGVSVIS 326
GV+V++
Sbjct: 163 V-GVAVLN 169
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 91/248 (36%), Gaps = 39/248 (15%)
Query: 143 YFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKE-------VH 195
YF L EA++P W+ L + + VG L G
Sbjct: 34 YFRQSLSYLEAYNPSDGTWLRLADLQVPRSGLAG----CVVGGLLYAVGGRNNSPDGNTD 89
Query: 196 GNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL-GEIAILAG--GCDPRGKLLKSAELYNS 252
+A+ YN +TN WS M+ PR G + G I + G GC S E Y
Sbjct: 90 SSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHH----NSVERYEP 145
Query: 253 ITGTWMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDM 312
W ++ M R ++ Y +GG +G++ L E Y E +W IT M
Sbjct: 146 ERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGF-DGTN-RLNSAECYYPERNEWRMITAM 203
Query: 313 FPARIGSDGVSVISAAGEAPPLLAVVNNELYAA-----DHEKEEVRKFDKGRKLWRTLGR 367
R G+ + V++N +YAA + V ++D + W +
Sbjct: 204 NTIRSGAG--------------VCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP 249
Query: 368 LPEQASSM 375
+ + S++
Sbjct: 250 MKHRRSAL 257
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 5/111 (4%)
Query: 217 TPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFMD 276
PR + +G + AGG + L E YN GTW+ ++ + R +G +
Sbjct: 14 VPRGSHMAPKVGRLIYTAGGYFRQS--LSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVG 71
Query: 277 GKFYVIGGIGEGSSAML--TDVEMYDLETGKWTQITDMFPARIGSDGVSVI 325
G Y +GG + ++ Y+ T +W+ M R GV VI
Sbjct: 72 GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPR-NRIGVGVI 121
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 78/206 (37%), Gaps = 21/206 (10%)
Query: 123 IQSGELYRLRREMGIIEHWVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLA 182
+ G +Y + G I H E ++P W + PM + +A
Sbjct: 113 VIDGHIYAVGGSHGCIHH--------SSVERYEPERDEWHLVAPMLTRRIGV-----GVA 159
Query: 183 VGTELLV----FGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCD 238
V LL F N+ Y N W MNT R G L AGG D
Sbjct: 160 VLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYD 219
Query: 239 PRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEM 298
+ +L S E Y+ T TW ++ M R GK YV+GG L VE
Sbjct: 220 GQDQL-NSVERYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGY--DGHTFLDSVEC 276
Query: 299 YDLETGKWTQITDMFPARIGSDGVSV 324
YD ++ W+++T M R G GV+V
Sbjct: 277 YDPDSDTWSEVTRMTSGRSGV-GVAV 301
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 6/128 (4%)
Query: 202 YNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCD--PRGKLLKSA-ELYNSITGTWM 258
YN +W + PR +G + GG + P G SA + YN +T W
Sbjct: 38 YNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS 97
Query: 259 PISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIG 318
P +SM R +DG Y +G G + VE Y+ E +W + M RIG
Sbjct: 98 PCASMSVPRNRIGVGVIDGHIYAVG--GSHGCIHHSSVERYEPERDEWHLVAPMLTRRIG 155
Query: 319 SDGVSVIS 326
GV+V++
Sbjct: 156 V-GVAVLN 162
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 92/248 (37%), Gaps = 39/248 (15%)
Query: 143 YFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKE-------VH 195
YF L EA++P + W+ L + + VG L G
Sbjct: 27 YFRQSLSYLEAYNPSNGSWLRLADLQVPRSGLAG----CVVGGLLYAVGGRNNSPDGNTD 82
Query: 196 GNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL-GEIAILAG--GCDPRGKLLKSAELYNS 252
+A+ YN +TN WS +M+ PR G + G I + G GC S E Y
Sbjct: 83 SSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHH----SSVERYEP 138
Query: 253 ITGTWMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDM 312
W ++ M R ++ Y +GG +G++ L E Y E +W IT M
Sbjct: 139 ERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGF-DGTN-RLNSAECYYPERNEWRMITPM 196
Query: 313 FPARIGSDGVSVISAAGEAPPLLAVVNNELYAA-----DHEKEEVRKFDKGRKLWRTLGR 367
R G+ + V++N +YAA + V ++D + W +
Sbjct: 197 NTIRSGAG--------------VCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP 242
Query: 368 LPEQASSM 375
+ S++
Sbjct: 243 MRHHRSAL 250
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 72/213 (33%), Gaps = 58/213 (27%)
Query: 154 FDPIHHRWMHLPPMNASDCF----------------------------MCADKESLAVGT 185
FD + W+ +PP+ + C MC D+ S G
Sbjct: 72 FDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGE 131
Query: 186 E----LLVFGKEV--HGNAIY----------------RYNLLTNTWSTGMTMNTPRCLFG 223
+V+G V H + +Y Y+ W M T R LFG
Sbjct: 132 SDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFG 191
Query: 224 SASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFMDGKFYVIG 283
+ I+A G G L SAE+Y+ W P + + R S V + G Y IG
Sbjct: 192 ATVHDGRIIVAAGVTDTG-LTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIG 250
Query: 284 GI-------GEGSSAMLTDVEMYDLETGKWTQI 309
G GE L D+ Y+ E KW +
Sbjct: 251 GFATLETESGELVPTELNDIWRYNEEEKKWEGV 283
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 201 RYNLLTNTWSTGMTMNTPRCLFG-SASLGEIAILAGGCDPRG-KLLKSAELYNSITGTW- 257
+++ L + W + +PRCLFG +L I ++ G G + L S Y+ ++ W
Sbjct: 71 QFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWG 130
Query: 258 --MPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPA 315
P+ + + S + + YVIGG G L + +YD + +W ++ M A
Sbjct: 131 ESDPLPYVVYGHTVLSHMDL---VYVIGGKGSDRKC-LNKMCVYDPKKFEWKELAPMQTA 186
Query: 316 R 316
R
Sbjct: 187 R 187
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 49/118 (41%), Gaps = 4/118 (3%)
Query: 207 NTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKA 266
N W NT R G L AGG D + +L S E Y+ T TW ++
Sbjct: 194 NEWRXITAXNTIRSGAGVCVLHNCIYAAGGYDGQDQL-NSVERYDVETETWTFVAPXKHR 252
Query: 267 RKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSV 324
R G+ YV+GG L VE YD +T W+++T R G GV+V
Sbjct: 253 RSALGITVHQGRIYVLGGY--DGHTFLDSVECYDPDTDTWSEVTRXTSGRSGV-GVAV 307
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 45/116 (38%), Gaps = 3/116 (2%)
Query: 194 VHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSI 253
+H N++ RY + W T R G A L + GG D + L SAE Y
Sbjct: 134 IHHNSVERYEPERDEWHLVAPXLTRRIGVGVAVLNRLLYAVGGFDGTNR-LNSAECYYPE 192
Query: 254 TGTWMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQI 309
W I++ + R + Y GG L VE YD+ET WT +
Sbjct: 193 RNEWRXITAXNTIRSGAGVCVLHNCIYAAGGY--DGQDQLNSVERYDVETETWTFV 246
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 49/128 (38%), Gaps = 6/128 (4%)
Query: 202 YNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCD--PRGKLLKSA-ELYNSITGTWM 258
YN TW + PR +G + GG + P G SA + YN T W
Sbjct: 44 YNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPXTNQWS 103
Query: 259 PISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIG 318
P + R +DG Y +G G VE Y+ E +W + RIG
Sbjct: 104 PCAPXSVPRNRIGVGVIDGHIYAVG--GSHGCIHHNSVERYEPERDEWHLVAPXLTRRIG 161
Query: 319 SDGVSVIS 326
GV+V++
Sbjct: 162 V-GVAVLN 168
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 88/244 (36%), Gaps = 31/244 (12%)
Query: 143 YFSCKLKEWEAFDPIHHRWMHLPPMNA--SDCFMCADKESL-AVGTELLVFGKEVHGNAI 199
YF L EA++P + W+ L + S C L AVG +A+
Sbjct: 33 YFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSAL 92
Query: 200 YRYNLLTNTWSTGMTMNTPRCLFGSASL-GEIAILAG--GCDPRGKLLKSAELYNSITGT 256
YN TN WS + PR G + G I + G GC S E Y
Sbjct: 93 DCYNPXTNQWSPCAPXSVPRNRIGVGVIDGHIYAVGGSHGCIHH----NSVERYEPERDE 148
Query: 257 WMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPAR 316
W ++ R ++ Y +GG +G++ L E Y E +W IT R
Sbjct: 149 WHLVAPXLTRRIGVGVAVLNRLLYAVGGF-DGTN-RLNSAECYYPERNEWRXITAXNTIR 206
Query: 317 IGSDGVSVISAAGEAPPLLAVVNNELYAA-----DHEKEEVRKFDKGRKLWRTLGRLPEQ 371
G+ + V++N +YAA + V ++D + W + +
Sbjct: 207 SGAG--------------VCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPXKHR 252
Query: 372 ASSM 375
S++
Sbjct: 253 RSAL 256
>pdb|2UVK|A Chain A, Structure Of Yjht
pdb|2UVK|B Chain B, Structure Of Yjht
Length = 357
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 267 RKMCSGVFMDGKFYVIGGIG---EGSSAMLTDVEMYDLETGKWTQITDMFP 314
R + F+DG YV GGIG EG + + DV Y+ +T W ++ P
Sbjct: 56 RDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLXSHAP 106
>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant
Length = 639
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 228 GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM-DGKFYVIGGIG 286
G+I ++ GG D K LY+S + +W+P M AR S M DG+ + IGG G
Sbjct: 237 GQI-VVTGGND-----AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSG 290
Query: 287 EGSSAMLTDVEMYDLETGKWTQI 309
G + E+Y + WT +
Sbjct: 291 SG-GVFEKNGEVYSPSSKTWTSL 312
>pdb|2EIB|A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant
Length = 639
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 228 GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM-DGKFYVIGGIG 286
G+I ++ GG D K LY+S + +W+P M AR S M DG+ + IGG
Sbjct: 237 GQI-VVTGGND-----AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSH 290
Query: 287 EGSSAMLTDVEMYDLETGKWTQI 309
G + E+Y + WT +
Sbjct: 291 SG-GVFEKNGEVYSPSSKTWTSL 312
>pdb|2EIC|A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f
Length = 639
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 228 GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM-DGKFYVIGGIG 286
G+I ++ GG D K LY+S + +W+P M AR S M DG+ + IGG
Sbjct: 237 GQI-VVTGGND-----AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSF 290
Query: 287 EGSSAMLTDVEMYDLETGKWTQI 309
G + E+Y + WT +
Sbjct: 291 SG-GVFEKNGEVYSPSSKTWTSL 312
>pdb|1K3I|A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase
Length = 656
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 228 GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM-DGKFYVIGGIG 286
G+I ++ GG D K LY+S + +W+P M AR S M DG+ + IGG
Sbjct: 254 GQI-VVTGGND-----AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSW 307
Query: 287 EGSSAMLTDVEMYDLETGKWTQI 309
G + E+Y + WT +
Sbjct: 308 SG-GVFEKNGEVYSPSSKTWTSL 329
>pdb|1T2X|A Chain A, Glactose Oxidase C383s Mutant Identified By Directed
Evolution
Length = 639
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 228 GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM-DGKFYVIGGIG 286
G+I ++ GG D K LY+S + +W+P M AR S M DG+ + IGG
Sbjct: 237 GQI-VVTGGND-----AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSW 290
Query: 287 EGSSAMLTDVEMYDLETGKWTQI 309
G + E+Y + WT +
Sbjct: 291 SG-GVFEKNGEVYSPSSKTWTSL 312
>pdb|2EIE|A Chain A, Crystal Structure Of Galactose Oxidase Complexed With
Azide
pdb|1GOF|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOG|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOH|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|2JKX|A Chain A, Galactose Oxidase. Matgo. Copper Free, Expressed In Pichia
Pastoris.
pdb|2VZ1|A Chain A, Premat-Galactose Oxidase
pdb|2VZ3|A Chain A, Bleached Galactose Oxidase
Length = 639
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 228 GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM-DGKFYVIGGIG 286
G+I ++ GG D K LY+S + +W+P M AR S M DG+ + IGG
Sbjct: 237 GQI-VVTGGND-----AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSW 290
Query: 287 EGSSAMLTDVEMYDLETGKWTQI 309
G + E+Y + WT +
Sbjct: 291 SG-GVFEKNGEVYSPSSKTWTSL 312
>pdb|2WQ8|A Chain A, Glycan Labelling Using Engineered Variants Of Galactose
Oxidase Obtained By Directed Evolution
Length = 661
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 228 GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM-DGKFYVIGGIG 286
G+I ++ GG D K LY+S + +W+P M AR S M DG+ + IGG
Sbjct: 259 GQI-VVTGGND-----AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSF 312
Query: 287 EGSSAMLTDVEMYDLETGKWTQI 309
G + E+Y + WT +
Sbjct: 313 SG-GVFEKNGEVYSPSSKTWTSL 334
>pdb|3C5Q|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase (I148l
Mutant) From Helicobacter Pylori Complexed With L-Lysine
Length = 425
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 281 VIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNN 340
V+G + E S L D + +LE G I ++G+ G S+ S P LL
Sbjct: 344 VVGPVCESSDTFLKDAHLPELEPGDKIAIE-----KVGAYGSSMASQYNSRPKLL----- 393
Query: 341 ELYAADHEKEEVRKFDKGRKLWR 363
EL DH+ +RK + LWR
Sbjct: 394 ELALEDHKIRVIRKREALEDLWR 416
>pdb|2QGH|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From
Helicobacter Pylori Complexed With L-Lysine
Length = 425
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 281 VIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNN 340
V+G + E S L D + +LE G I ++G+ G S+ S P LL
Sbjct: 344 VVGPVCESSDTFLKDAHLPELEPGDKIAIE-----KVGAYGSSMASQYNSRPKLL----- 393
Query: 341 ELYAADHEKEEVRKFDKGRKLWR 363
EL DH+ +RK + LWR
Sbjct: 394 ELALEDHKIRVIRKREALEDLWR 416
>pdb|1K32|A Chain A, Crystal Structure Of The Tricorn Protease
pdb|1K32|B Chain B, Crystal Structure Of The Tricorn Protease
pdb|1K32|C Chain C, Crystal Structure Of The Tricorn Protease
pdb|1K32|D Chain D, Crystal Structure Of The Tricorn Protease
pdb|1K32|E Chain E, Crystal Structure Of The Tricorn Protease
pdb|1K32|F Chain F, Crystal Structure Of The Tricorn Protease
Length = 1045
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 58/143 (40%), Gaps = 20/143 (13%)
Query: 254 TGTWMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMF 313
+G + I M + + S V + + Y I I TD++ DL K T TD +
Sbjct: 193 SGAFKKIVDM--STHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLR--KHTSFTDYY 248
Query: 314 PARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKG------RKLWRTLGR 367
P + +DG ++ + G +Y + + E++ K + G ++ +
Sbjct: 249 PRHLNTDGRRILFSKG----------GSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSK 298
Query: 368 LPEQASSMNGWGLAFRACGDQLI 390
E S ++G +AF + G I
Sbjct: 299 FAEDFSPLDGDLIAFVSRGQAFI 321
>pdb|1N6D|A Chain A, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6D|B Chain B, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6D|C Chain C, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6D|D Chain D, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6D|E Chain E, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6D|F Chain F, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6E|A Chain A, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6E|C Chain C, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6E|E Chain E, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6E|G Chain G, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6E|I Chain I, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6E|K Chain K, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6F|A Chain A, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
pdb|1N6F|B Chain B, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
pdb|1N6F|C Chain C, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
pdb|1N6F|D Chain D, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
pdb|1N6F|E Chain E, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
pdb|1N6F|F Chain F, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
Length = 1071
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 58/143 (40%), Gaps = 20/143 (13%)
Query: 254 TGTWMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMF 313
+G + I M + + S V + + Y I I TD++ DL K T TD +
Sbjct: 219 SGAFKKIVDM--STHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLR--KHTSFTDYY 274
Query: 314 PARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKG------RKLWRTLGR 367
P + +DG ++ + G +Y + + E++ K + G ++ +
Sbjct: 275 PRHLNTDGRRILFSKG----------GSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSK 324
Query: 368 LPEQASSMNGWGLAFRACGDQLI 390
E S ++G +AF + G I
Sbjct: 325 FAEDFSPLDGDLIAFVSRGQAFI 347
>pdb|1W5F|A Chain A, Ftsz, T7 Mutated, Domain Swapped (T. Maritima)
pdb|1W5F|B Chain B, Ftsz, T7 Mutated, Domain Swapped (T. Maritima)
Length = 353
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 2 FEDPSYIVPRDLPTSLKQESKQIQCVLKLSNNKRPLEEGEKLAVKRAAIEASKT-EEPVK 60
FE P + + LK+ K + ++K+SNNK E + +K A ++A +T + VK
Sbjct: 148 FEGPERL--KKAIEGLKKLRKHVDTLIKISNNKLMEELPRDVKIKDAFLKADETLHQGVK 205
Query: 61 GLSNL 65
G+S L
Sbjct: 206 GISEL 210
>pdb|3CEW|A Chain A, Crystal Structure Of A Cupin Protein (Bf4112) From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr205
pdb|3CEW|B Chain B, Crystal Structure Of A Cupin Protein (Bf4112) From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr205
pdb|3CEW|C Chain C, Crystal Structure Of A Cupin Protein (Bf4112) From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr205
pdb|3CEW|D Chain D, Crystal Structure Of A Cupin Protein (Bf4112) From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr205
Length = 125
Score = 28.5 bits (62), Expect = 6.9, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 282 IGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAP 332
I GI G + D E +L+ G W RI DG ISAA ++P
Sbjct: 51 IYGILSGKGFITIDGEKIELQAGDWL--------RIAPDGKRQISAASDSP 93
>pdb|4DF3|A Chain A, Crystal Structure Of Aeropyrum Pernix Fibrillarin In
Complex With Natively Bound S-adenosyl-l-methionine At
1.7a
pdb|4DF3|B Chain B, Crystal Structure Of Aeropyrum Pernix Fibrillarin In
Complex With Natively Bound S-adenosyl-l-methionine At
1.7a
Length = 233
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 158 HHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYN 203
H RW + + D SL + T+ LV G+ V+G I+RYN
Sbjct: 10 HDRWRGVYVVELEDG-------SLRIATKNLVPGQRVYGERIFRYN 48
>pdb|2ZW9|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZW9|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
Length = 695
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 222 FGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM-DGKFY 280
F + S +L GG + L +++ T W I S+ R S + DG
Sbjct: 445 FTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVL 504
Query: 281 VIGGIGEGSSAMLTDV 296
++GG+ EG + +L +V
Sbjct: 505 ILGGVTEGPAMLLYNV 520
>pdb|1MIU|A Chain A, Structure Of A Brca2-dss1 Complex
Length = 738
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 17/130 (13%)
Query: 19 QESKQIQCVLKLSNNKR---PLEEGEKL--AVKRAA----IEASKTEEPVKGLSNLSLAQ 69
+E +CVL + ++ L++G +L AV+ A+ +EA +EE ++ L+N
Sbjct: 421 EEDTTQRCVLSRTLTRQQVHALQDGAELYAAVQYASDPDHLEACFSEEQLRALNNYRQML 480
Query: 70 TDQAEAHLQGGNLSDSNSLIPE--LGRDITINCLLRCS---RSDYGAIASLNRA---FRS 121
D+ +A +Q S E L RD+T LR + + + A+ S+ R S
Sbjct: 481 NDKKQARIQSEFRKALESAEKEEGLSRDVTTVWKLRVTSYKKKEKSALLSIWRPSSDLSS 540
Query: 122 LIQSGELYRL 131
L+ G+ YR+
Sbjct: 541 LLTEGKRYRI 550
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,557,577
Number of Sequences: 62578
Number of extensions: 566026
Number of successful extensions: 1453
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1329
Number of HSP's gapped (non-prelim): 74
length of query: 437
length of database: 14,973,337
effective HSP length: 102
effective length of query: 335
effective length of database: 8,590,381
effective search space: 2877777635
effective search space used: 2877777635
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)