Query 043540
Match_columns 437
No_of_seqs 385 out of 2838
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 06:02:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043540.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043540hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 1.1E-43 2.3E-48 362.3 29.0 260 148-435 300-568 (571)
2 PHA02713 hypothetical protein; 100.0 7.3E-41 1.6E-45 342.9 29.1 249 150-428 273-548 (557)
3 KOG4441 Proteins containing BT 100.0 7.3E-38 1.6E-42 319.5 25.9 231 182-436 282-522 (571)
4 PLN02153 epithiospecifier prot 100.0 7.1E-37 1.5E-41 297.5 30.6 254 156-433 4-309 (341)
5 PHA02713 hypothetical protein; 100.0 3.6E-36 7.7E-41 308.3 28.7 217 197-436 272-512 (557)
6 PHA03098 kelch-like protein; P 100.0 4.3E-36 9.4E-41 309.5 28.9 252 150-430 265-528 (534)
7 PLN02153 epithiospecifier prot 100.0 1.4E-35 3E-40 288.4 28.4 265 122-411 29-337 (341)
8 TIGR03547 muta_rot_YjhT mutatr 100.0 5.9E-35 1.3E-39 284.9 29.6 254 164-436 1-321 (346)
9 PLN02193 nitrile-specifier pro 100.0 1.2E-34 2.5E-39 292.4 32.4 255 151-431 139-434 (470)
10 TIGR03547 muta_rot_YjhT mutatr 100.0 6.7E-35 1.5E-39 284.5 27.1 255 122-405 14-340 (346)
11 TIGR03548 mutarot_permut cycli 100.0 2.1E-34 4.5E-39 278.2 26.8 259 122-403 10-320 (323)
12 PHA02790 Kelch-like protein; P 100.0 2.6E-34 5.7E-39 290.5 28.7 208 181-421 268-478 (480)
13 PLN02193 nitrile-specifier pro 100.0 3.2E-33 7E-38 281.9 29.7 268 120-414 170-469 (470)
14 PRK14131 N-acetylneuraminic ac 100.0 3.7E-33 8E-38 274.5 28.5 257 160-435 18-342 (376)
15 TIGR03548 mutarot_permut cycli 100.0 4.7E-33 1E-37 268.8 28.2 241 179-436 8-303 (323)
16 PHA02790 Kelch-like protein; P 100.0 1.3E-33 2.9E-38 285.4 24.1 203 124-365 270-477 (480)
17 PRK14131 N-acetylneuraminic ac 100.0 6.6E-33 1.4E-37 272.7 25.8 268 122-419 35-374 (376)
18 PHA03098 kelch-like protein; P 100.0 9.4E-33 2E-37 284.7 24.4 229 119-372 288-525 (534)
19 KOG4693 Uncharacterized conser 100.0 7.5E-30 1.6E-34 223.6 20.4 240 177-436 16-302 (392)
20 KOG4693 Uncharacterized conser 100.0 3.4E-30 7.3E-35 225.8 18.0 257 119-397 17-313 (392)
21 KOG0379 Kelch repeat-containin 99.9 2.1E-24 4.5E-29 217.4 25.7 241 167-433 57-325 (482)
22 KOG0379 Kelch repeat-containin 99.9 5E-23 1.1E-27 207.4 23.2 272 123-421 68-369 (482)
23 KOG1230 Protein containing rep 99.9 1.2E-22 2.7E-27 188.3 18.9 222 184-420 78-347 (521)
24 KOG1230 Protein containing rep 99.9 1.7E-22 3.7E-27 187.4 15.8 216 127-365 80-347 (521)
25 KOG4152 Host cell transcriptio 99.9 9.6E-22 2.1E-26 186.5 16.6 244 119-397 36-343 (830)
26 KOG4152 Host cell transcriptio 99.9 8.1E-21 1.7E-25 180.3 17.4 253 159-436 17-332 (830)
27 COG3055 Uncharacterized protei 99.8 4.4E-17 9.6E-22 149.8 21.8 247 148-412 57-375 (381)
28 COG3055 Uncharacterized protei 99.6 1.1E-14 2.4E-19 134.1 15.9 193 211-426 29-268 (381)
29 PF13964 Kelch_6: Kelch motif 99.3 1E-11 2.2E-16 84.6 6.5 50 218-267 1-50 (50)
30 PF13964 Kelch_6: Kelch motif 99.1 1.6E-10 3.4E-15 78.7 6.5 50 266-316 1-50 (50)
31 PF01344 Kelch_1: Kelch motif; 99.1 1.2E-10 2.6E-15 78.3 4.8 47 218-264 1-47 (47)
32 TIGR01640 F_box_assoc_1 F-box 99.0 6.9E-08 1.5E-12 88.6 22.3 209 183-415 4-230 (230)
33 KOG2437 Muskelin [Signal trans 99.0 2.9E-10 6.3E-15 109.0 5.1 185 203-396 235-457 (723)
34 PF01344 Kelch_1: Kelch motif; 98.9 1.3E-09 2.9E-14 73.1 4.9 47 266-313 1-47 (47)
35 PF07646 Kelch_2: Kelch motif; 98.9 5.4E-09 1.2E-13 70.7 6.3 47 218-264 1-49 (49)
36 PF13418 Kelch_4: Galactose ox 98.9 2.5E-09 5.5E-14 72.4 4.1 47 218-264 1-48 (49)
37 PF13415 Kelch_3: Galactose ox 98.9 5.9E-09 1.3E-13 70.5 5.8 48 228-275 1-49 (49)
38 KOG2437 Muskelin [Signal trans 98.8 6.8E-09 1.5E-13 99.8 6.2 153 253-421 237-420 (723)
39 PF07646 Kelch_2: Kelch motif; 98.8 2.7E-08 5.8E-13 67.3 6.5 48 266-313 1-49 (49)
40 PF13415 Kelch_3: Galactose ox 98.7 1.8E-08 3.9E-13 68.1 5.1 49 386-435 1-49 (49)
41 smart00612 Kelch Kelch domain. 98.7 2E-08 4.4E-13 67.1 5.2 47 230-277 1-47 (47)
42 PF13418 Kelch_4: Galactose ox 98.7 2E-08 4.3E-13 68.0 4.9 48 266-314 1-49 (49)
43 TIGR01640 F_box_assoc_1 F-box 98.7 1.1E-05 2.3E-10 74.0 23.2 199 149-360 14-230 (230)
44 PF07250 Glyoxal_oxid_N: Glyox 98.7 2E-06 4.4E-11 78.2 17.5 153 199-372 48-212 (243)
45 PF07250 Glyoxal_oxid_N: Glyox 98.7 1.4E-06 3.1E-11 79.1 16.2 156 245-429 46-214 (243)
46 PLN03215 ascorbic acid mannose 98.5 7E-05 1.5E-09 72.2 25.4 105 303-425 189-306 (373)
47 smart00612 Kelch Kelch domain. 98.4 3.9E-07 8.6E-12 60.7 5.2 39 278-318 1-39 (47)
48 PLN02772 guanylate kinase 98.4 2E-06 4.3E-11 83.1 11.2 83 217-303 23-109 (398)
49 PF13854 Kelch_5: Kelch motif 98.3 1.7E-06 3.6E-11 56.2 5.2 41 215-255 1-42 (42)
50 PF12937 F-box-like: F-box-lik 98.3 4.5E-07 9.8E-12 60.6 2.5 42 89-130 1-42 (47)
51 PF13854 Kelch_5: Kelch motif 98.1 6.7E-06 1.5E-10 53.4 5.6 41 263-303 1-41 (42)
52 PRK11138 outer membrane biogen 98.0 0.0082 1.8E-07 59.7 27.9 216 141-394 71-302 (394)
53 smart00256 FBOX A Receptor for 98.0 6.3E-06 1.4E-10 53.1 3.4 39 92-130 1-39 (41)
54 PLN02772 guanylate kinase 98.0 6.2E-05 1.3E-09 72.9 11.1 80 265-359 23-109 (398)
55 PF13360 PQQ_2: PQQ-like domai 97.9 0.0039 8.4E-08 57.0 22.3 181 139-363 36-237 (238)
56 KOG0281 Beta-TrCP (transducin 97.9 0.00038 8.3E-09 64.7 14.7 44 87-130 73-120 (499)
57 PF00646 F-box: F-box domain; 97.9 1.7E-06 3.6E-11 58.1 -0.7 43 88-130 2-44 (48)
58 PRK11138 outer membrane biogen 97.9 0.019 4.1E-07 57.1 27.7 202 140-393 121-342 (394)
59 PF13360 PQQ_2: PQQ-like domai 97.8 0.031 6.6E-07 51.0 25.4 221 150-418 4-237 (238)
60 TIGR03300 assembly_YfgL outer 97.7 0.052 1.1E-06 53.5 27.8 227 141-419 67-305 (377)
61 TIGR03300 assembly_YfgL outer 97.7 0.033 7.2E-07 54.9 25.8 205 141-394 147-369 (377)
62 PF07893 DUF1668: Protein of u 97.7 0.0017 3.7E-08 63.1 15.7 123 183-315 75-220 (342)
63 PF07893 DUF1668: Protein of u 97.6 0.0034 7.4E-08 61.0 16.0 131 227-371 75-222 (342)
64 PF03089 RAG2: Recombination a 97.5 0.0096 2.1E-07 54.4 16.9 170 232-419 42-260 (337)
65 PF08450 SGL: SMP-30/Gluconola 97.4 0.0064 1.4E-07 56.1 15.3 203 184-434 11-232 (246)
66 PF08450 SGL: SMP-30/Gluconola 97.1 0.036 7.7E-07 51.1 16.2 196 141-371 14-225 (246)
67 PRK11028 6-phosphogluconolacto 96.9 0.41 9E-06 46.1 25.6 236 148-422 11-269 (330)
68 PF12768 Rax2: Cortical protei 96.9 0.05 1.1E-06 51.0 15.1 121 231-367 1-130 (281)
69 PF03089 RAG2: Recombination a 96.8 0.24 5.2E-06 45.5 18.0 74 213-286 82-174 (337)
70 PF05096 Glu_cyclase_2: Glutam 96.6 0.11 2.4E-06 47.9 15.2 185 183-395 54-251 (264)
71 KOG0274 Cdc4 and related F-box 96.4 1.1 2.5E-05 46.1 22.6 46 85-130 104-149 (537)
72 TIGR03866 PQQ_ABC_repeats PQQ- 96.2 1.1 2.4E-05 41.8 23.0 177 147-362 9-191 (300)
73 PF10282 Lactonase: Lactonase, 96.1 0.68 1.5E-05 45.1 18.8 238 151-424 17-288 (345)
74 PF14870 PSII_BNR: Photosynthe 95.7 1.6 3.5E-05 41.5 18.5 216 158-421 46-269 (302)
75 PRK04792 tolB translocation pr 95.6 2.4 5.2E-05 42.9 20.8 146 196-367 241-391 (448)
76 KOG2055 WD40 repeat protein [G 95.6 0.3 6.5E-06 47.7 13.0 138 228-396 224-366 (514)
77 PF05096 Glu_cyclase_2: Glutam 95.6 0.23 4.9E-06 45.8 11.8 96 275-396 54-149 (264)
78 smart00284 OLF Olfactomedin-li 95.6 1 2.2E-05 41.4 16.0 172 228-426 34-220 (255)
79 cd00094 HX Hemopexin-like repe 95.5 1.3 2.8E-05 39.2 16.5 151 223-416 11-178 (194)
80 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.5 3.6 7.9E-05 42.5 24.6 209 140-361 70-336 (527)
81 KOG2120 SCF ubiquitin ligase, 95.4 0.0098 2.1E-07 55.0 2.5 43 89-131 98-140 (419)
82 TIGR03866 PQQ_ABC_repeats PQQ- 95.4 2.3 4.9E-05 39.6 19.5 139 186-361 2-148 (300)
83 PF12768 Rax2: Cortical protei 95.3 0.34 7.5E-06 45.5 12.4 109 196-311 15-130 (281)
84 COG4257 Vgb Streptogramin lyas 95.2 2.5 5.5E-05 39.0 17.8 185 150-366 125-313 (353)
85 PF10282 Lactonase: Lactonase, 95.2 0.85 1.8E-05 44.4 15.5 193 199-420 17-231 (345)
86 PRK13684 Ycf48-like protein; P 95.1 3.4 7.4E-05 40.0 23.2 191 183-421 98-296 (334)
87 PF09910 DUF2139: Uncharacteri 95.1 2.9 6.2E-05 39.0 20.5 164 178-360 40-232 (339)
88 PF03178 CPSF_A: CPSF A subuni 95.1 0.59 1.3E-05 45.0 14.0 120 245-392 62-189 (321)
89 KOG2055 WD40 repeat protein [G 95.1 0.81 1.8E-05 44.8 14.1 140 187-359 272-418 (514)
90 PRK13684 Ycf48-like protein; P 95.0 3.8 8.3E-05 39.7 19.3 175 185-395 143-322 (334)
91 PF08268 FBA_3: F-box associat 94.9 0.51 1.1E-05 38.7 11.1 80 273-366 2-88 (129)
92 PRK05137 tolB translocation pr 94.9 4.8 0.00011 40.5 26.7 146 196-366 225-374 (435)
93 cd00094 HX Hemopexin-like repe 94.7 2.9 6.2E-05 37.0 16.7 147 181-361 13-178 (194)
94 COG4257 Vgb Streptogramin lyas 94.5 4 8.7E-05 37.7 18.7 223 152-421 86-313 (353)
95 COG1520 FOG: WD40-like repeat 94.5 5.4 0.00012 39.2 20.0 150 181-364 65-225 (370)
96 PRK11028 6-phosphogluconolacto 94.4 5 0.00011 38.6 27.3 218 184-435 91-328 (330)
97 cd00200 WD40 WD40 domain, foun 94.4 3.7 8.1E-05 37.0 21.5 143 185-362 63-211 (289)
98 cd00216 PQQ_DH Dehydrogenases 94.3 5.6 0.00012 40.8 19.6 116 223-364 56-191 (488)
99 PRK00178 tolB translocation pr 94.1 7.1 0.00015 39.1 26.2 158 184-367 210-372 (430)
100 KOG0289 mRNA splicing factor [ 94.1 1.3 2.7E-05 43.2 12.8 120 268-424 349-473 (506)
101 cd00200 WD40 WD40 domain, foun 94.0 4.5 9.7E-05 36.5 21.5 143 185-360 105-251 (289)
102 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.0 8.6 0.00019 39.8 20.1 115 223-365 64-198 (527)
103 PRK04922 tolB translocation pr 93.9 8.1 0.00017 38.9 22.4 146 196-367 227-377 (433)
104 PF08268 FBA_3: F-box associat 93.8 0.61 1.3E-05 38.2 9.3 82 336-421 2-88 (129)
105 cd00216 PQQ_DH Dehydrogenases 93.6 9.6 0.00021 39.1 27.5 208 142-364 64-327 (488)
106 PRK04792 tolB translocation pr 93.5 9.5 0.00021 38.6 21.3 147 149-310 242-390 (448)
107 KOG0316 Conserved WD40 repeat- 93.5 5 0.00011 36.2 14.6 136 197-361 39-176 (307)
108 TIGR02800 propeller_TolB tol-p 93.3 9.4 0.0002 37.9 25.1 145 197-367 214-363 (417)
109 PF03178 CPSF_A: CPSF A subuni 93.3 1.8 3.8E-05 41.6 13.0 105 197-315 62-172 (321)
110 KOG2997 F-box protein FBX9 [Ge 93.2 0.062 1.3E-06 50.0 2.6 44 89-132 107-155 (366)
111 PLN02919 haloacid dehalogenase 93.1 19 0.0004 40.8 27.5 169 184-367 635-842 (1057)
112 PRK00178 tolB translocation pr 92.6 12 0.00027 37.4 20.5 145 150-311 224-372 (430)
113 PLN02919 haloacid dehalogenase 92.5 7.3 0.00016 43.9 18.0 161 184-361 694-891 (1057)
114 COG1520 FOG: WD40-like repeat 92.4 12 0.00026 36.7 22.1 193 147-367 76-279 (370)
115 KOG0310 Conserved WD40 repeat- 92.2 5.8 0.00013 39.3 14.4 259 87-396 33-300 (487)
116 KOG0310 Conserved WD40 repeat- 92.0 14 0.0003 36.7 18.0 108 181-305 76-187 (487)
117 PRK04043 tolB translocation pr 91.9 15 0.00033 36.8 20.3 144 196-367 212-366 (419)
118 PLN00181 protein SPA1-RELATED; 91.8 18 0.00039 39.6 19.8 131 196-359 554-691 (793)
119 PRK03629 tolB translocation pr 91.7 16 0.00034 36.8 22.5 147 196-367 222-372 (429)
120 smart00284 OLF Olfactomedin-li 91.6 11 0.00024 34.8 17.2 181 184-393 34-242 (255)
121 PLN03215 ascorbic acid mannose 91.5 15 0.00033 36.0 17.2 39 87-125 2-41 (373)
122 COG3823 Glutamine cyclotransfe 91.2 10 0.00023 33.6 15.3 186 180-396 51-250 (262)
123 KOG1332 Vesicle coat complex C 90.7 13 0.00028 33.8 15.0 102 230-367 176-296 (299)
124 PRK05137 tolB translocation pr 90.7 20 0.00044 36.0 20.7 147 149-310 226-374 (435)
125 PF02191 OLF: Olfactomedin-lik 90.4 15 0.00032 34.0 16.7 180 184-393 30-237 (250)
126 KOG1036 Mitotic spindle checkp 90.2 16 0.00035 34.2 15.2 131 198-361 36-166 (323)
127 COG4946 Uncharacterized protei 90.0 22 0.00048 35.5 16.5 78 181-267 232-310 (668)
128 TIGR03074 PQQ_membr_DH membran 89.9 33 0.00071 37.3 20.4 36 222-264 188-225 (764)
129 PRK04922 tolB translocation pr 89.5 25 0.00054 35.3 20.7 145 245-421 228-376 (433)
130 COG4946 Uncharacterized protei 89.4 25 0.00053 35.1 18.5 210 147-394 285-508 (668)
131 PF02191 OLF: Olfactomedin-lik 89.2 2.2 4.8E-05 39.4 8.5 75 276-370 30-109 (250)
132 TIGR02658 TTQ_MADH_Hv methylam 89.1 23 0.0005 34.5 23.2 111 138-259 11-142 (352)
133 KOG0289 mRNA splicing factor [ 89.1 16 0.00035 35.9 14.2 121 222-372 351-476 (506)
134 PF14870 PSII_BNR: Photosynthe 88.1 25 0.00053 33.5 17.8 173 184-393 27-204 (302)
135 KOG0291 WD40-repeat-containing 88.0 39 0.00085 35.7 18.2 58 149-212 414-473 (893)
136 COG3386 Gluconolactonase [Carb 87.9 26 0.00056 33.5 22.2 224 142-396 40-277 (307)
137 PLN00033 photosystem II stabil 87.7 31 0.00068 34.3 22.5 195 181-421 143-364 (398)
138 PLN00181 protein SPA1-RELATED; 87.5 49 0.0011 36.3 19.2 144 184-360 587-740 (793)
139 PF12217 End_beta_propel: Cata 86.5 20 0.00043 33.0 12.3 155 178-347 78-257 (367)
140 TIGR03074 PQQ_membr_DH membran 86.0 57 0.0012 35.5 25.5 168 139-309 194-431 (764)
141 PTZ00421 coronin; Provisional 85.9 45 0.00097 34.3 17.9 106 228-361 87-201 (493)
142 PRK02889 tolB translocation pr 85.8 41 0.00089 33.7 22.8 187 149-366 176-368 (427)
143 PRK04043 tolB translocation pr 85.5 42 0.00091 33.6 20.2 150 149-311 213-366 (419)
144 PRK01742 tolB translocation pr 85.3 42 0.00091 33.7 15.9 138 150-310 229-369 (429)
145 KOG0291 WD40-repeat-containing 84.5 60 0.0013 34.5 19.9 152 220-410 308-465 (893)
146 KOG0316 Conserved WD40 repeat- 84.2 32 0.0007 31.2 17.5 134 197-361 81-216 (307)
147 TIGR02658 TTQ_MADH_Hv methylam 83.9 45 0.00097 32.6 20.7 63 148-211 76-142 (352)
148 TIGR02800 propeller_TolB tol-p 83.8 48 0.001 32.8 23.3 147 149-311 214-363 (417)
149 PF02897 Peptidase_S9_N: Proly 83.3 23 0.0005 35.2 13.0 145 197-366 252-412 (414)
150 PF07734 FBA_1: F-box associat 82.8 23 0.0005 30.2 11.1 83 225-312 2-93 (164)
151 KOG1332 Vesicle coat complex C 82.3 40 0.00086 30.8 15.7 55 356-423 241-297 (299)
152 KOG0286 G-protein beta subunit 82.2 44 0.00096 31.3 20.0 178 183-396 107-294 (343)
153 KOG2321 WD40 repeat protein [G 81.9 13 0.00029 37.8 10.1 124 217-361 132-261 (703)
154 PTZ00421 coronin; Provisional 81.1 70 0.0015 32.9 17.2 152 186-365 139-297 (493)
155 KOG2321 WD40 repeat protein [G 80.5 15 0.00032 37.5 9.9 105 184-305 145-261 (703)
156 COG2706 3-carboxymuconate cycl 80.0 59 0.0013 31.3 21.6 168 229-421 52-231 (346)
157 PF02897 Peptidase_S9_N: Proly 79.0 71 0.0015 31.7 18.4 194 196-420 201-411 (414)
158 PLN00033 photosystem II stabil 79.0 72 0.0016 31.7 19.6 49 339-394 338-389 (398)
159 COG2706 3-carboxymuconate cycl 78.7 64 0.0014 31.0 21.2 239 151-422 68-332 (346)
160 PF07734 FBA_1: F-box associat 78.3 12 0.00027 31.9 7.9 80 336-420 2-90 (164)
161 KOG4378 Nuclear protein COP1 [ 78.2 36 0.00079 34.2 11.6 64 273-359 217-281 (673)
162 KOG0299 U3 snoRNP-associated p 78.0 77 0.0017 31.5 17.8 205 181-431 210-430 (479)
163 PF06433 Me-amine-dh_H: Methyl 76.9 9 0.0002 36.8 7.1 71 276-362 249-324 (342)
164 PRK01742 tolB translocation pr 76.8 86 0.0019 31.4 20.5 140 196-366 227-369 (429)
165 KOG2048 WD40 repeat protein [G 76.7 1E+02 0.0022 32.3 22.8 191 148-364 46-239 (691)
166 KOG0293 WD40 repeat-containing 76.4 52 0.0011 32.3 11.9 136 198-366 292-431 (519)
167 PF13859 BNR_3: BNR repeat-lik 76.4 73 0.0016 30.5 14.2 191 222-425 2-218 (310)
168 KOG0266 WD40 repeat-containing 76.3 92 0.002 31.6 17.6 145 184-361 214-367 (456)
169 PTZ00420 coronin; Provisional 76.1 1.1E+02 0.0023 32.2 16.7 151 186-366 139-301 (568)
170 PRK03629 tolB translocation pr 75.8 92 0.002 31.3 21.2 117 185-311 255-372 (429)
171 PRK10115 protease 2; Provision 75.5 1.2E+02 0.0027 32.6 16.3 150 195-367 245-403 (686)
172 PF06433 Me-amine-dh_H: Methyl 74.7 51 0.0011 31.8 11.4 99 149-258 17-131 (342)
173 KOG0649 WD40 repeat protein [G 73.9 72 0.0016 29.2 14.8 143 206-372 98-249 (325)
174 KOG0649 WD40 repeat protein [G 73.6 73 0.0016 29.1 12.5 87 255-365 99-193 (325)
175 TIGR03032 conserved hypothetic 73.5 8.9 0.00019 36.4 5.9 54 333-394 206-259 (335)
176 KOG3545 Olfactomedin and relat 72.7 77 0.0017 29.0 15.1 92 246-368 11-109 (249)
177 PRK02889 tolB translocation pr 72.4 1.1E+02 0.0024 30.6 22.1 146 196-366 175-324 (427)
178 PTZ00420 coronin; Provisional 71.9 1.3E+02 0.0029 31.4 20.8 24 338-361 177-200 (568)
179 KOG1897 Damage-specific DNA bi 71.3 1.7E+02 0.0037 32.4 17.8 167 197-393 750-930 (1096)
180 cd00260 Sialidase Sialidases o 70.7 1E+02 0.0023 29.7 20.7 101 333-434 201-318 (351)
181 PF14781 BBS2_N: Ciliary BBSom 70.4 28 0.00062 28.6 7.5 106 139-259 10-133 (136)
182 COG3823 Glutamine cyclotransfe 68.6 47 0.001 29.7 8.9 100 271-395 50-149 (262)
183 PF12217 End_beta_propel: Cata 68.4 1E+02 0.0022 28.6 14.4 201 181-398 22-261 (367)
184 KOG0315 G-protein beta subunit 68.4 98 0.0021 28.5 16.6 178 197-411 61-245 (311)
185 COG4880 Secreted protein conta 67.9 1.2E+02 0.0026 30.2 12.2 42 194-235 403-444 (603)
186 PF15492 Nbas_N: Neuroblastoma 67.6 1E+02 0.0022 28.8 11.2 14 386-399 158-171 (282)
187 KOG0315 G-protein beta subunit 67.3 1E+02 0.0022 28.3 15.9 114 228-373 51-168 (311)
188 KOG0292 Vesicle coat complex C 67.2 1.4E+02 0.003 32.7 13.3 135 186-365 219-355 (1202)
189 KOG4499 Ca2+-binding protein R 65.8 52 0.0011 30.0 8.7 36 338-373 221-256 (310)
190 KOG0263 Transcription initiati 65.5 1.2E+02 0.0027 32.1 12.6 107 225-359 542-650 (707)
191 COG0823 TolB Periplasmic compo 65.4 1.6E+02 0.0034 29.7 14.1 118 183-310 247-367 (425)
192 KOG0305 Anaphase promoting com 64.2 1.7E+02 0.0038 29.8 14.7 134 197-361 197-334 (484)
193 PF13088 BNR_2: BNR repeat-lik 64.0 1.2E+02 0.0026 27.9 16.7 184 228-434 58-266 (275)
194 KOG1036 Mitotic spindle checkp 62.4 1.4E+02 0.0031 28.2 11.5 90 245-359 35-125 (323)
195 KOG0285 Pleiotropic regulator 59.8 1.7E+02 0.0038 28.3 16.8 33 334-366 365-398 (460)
196 KOG4341 F-box protein containi 59.8 7.2 0.00016 38.3 2.6 49 81-129 64-112 (483)
197 KOG0281 Beta-TrCP (transducin 59.1 49 0.0011 31.8 7.7 108 269-412 322-429 (499)
198 PF03022 MRJP: Major royal jel 58.1 1.6E+02 0.0034 27.8 11.3 83 276-367 11-106 (287)
199 KOG0274 Cdc4 and related F-box 56.5 2.5E+02 0.0054 29.3 13.2 133 198-361 352-485 (537)
200 PF14781 BBS2_N: Ciliary BBSom 55.4 66 0.0014 26.5 7.0 63 229-309 64-134 (136)
201 KOG0272 U4/U6 small nuclear ri 54.2 1.2E+02 0.0026 30.0 9.6 115 273-423 311-426 (459)
202 KOG0318 WD40 repeat stress pro 53.4 1.7E+02 0.0037 29.8 10.8 104 228-359 454-561 (603)
203 KOG3545 Olfactomedin and relat 52.6 1.9E+02 0.0041 26.6 17.4 198 151-393 12-236 (249)
204 KOG4649 PQQ (pyrrolo-quinoline 52.4 2E+02 0.0043 26.8 13.5 90 245-361 33-126 (354)
205 KOG0266 WD40 repeat-containing 52.1 2.7E+02 0.0058 28.2 19.1 107 228-362 214-322 (456)
206 PF01436 NHL: NHL repeat; Int 51.9 28 0.00061 19.8 3.3 23 333-355 5-28 (28)
207 PF14583 Pectate_lyase22: Olig 49.1 2.3E+02 0.005 28.0 10.9 195 132-348 85-302 (386)
208 PF08662 eIF2A: Eukaryotic tra 49.0 1.8E+02 0.004 25.4 10.3 91 184-285 71-163 (194)
209 KOG0296 Angio-associated migra 48.6 2.7E+02 0.0058 27.1 18.0 142 185-361 76-223 (399)
210 PF13013 F-box-like_2: F-box-l 47.7 28 0.0006 27.6 3.7 29 89-117 22-50 (109)
211 PF02239 Cytochrom_D1: Cytochr 47.4 2E+02 0.0044 28.2 10.6 90 245-361 16-111 (369)
212 PF03088 Str_synth: Strictosid 46.7 38 0.00083 25.7 4.2 47 340-392 10-74 (89)
213 PF02239 Cytochrom_D1: Cytochr 46.4 3E+02 0.0064 27.0 13.3 182 147-364 14-208 (369)
214 PF13570 PQQ_3: PQQ-like domai 46.0 52 0.0011 20.3 4.2 26 270-303 15-40 (40)
215 KOG0272 U4/U6 small nuclear ri 43.3 3.4E+02 0.0073 27.0 10.8 94 182-286 312-409 (459)
216 COG3386 Gluconolactonase [Carb 42.8 3.1E+02 0.0067 26.2 20.4 138 195-359 45-194 (307)
217 KOG0265 U5 snRNP-specific prot 42.0 3.1E+02 0.0067 26.0 11.3 61 184-258 58-125 (338)
218 PHA02579 7 baseplate wedge sub 41.1 5E+02 0.011 28.1 12.4 56 337-393 370-446 (1030)
219 PRK02888 nitrous-oxide reducta 40.7 4.7E+02 0.01 27.7 12.7 45 349-396 295-342 (635)
220 KOG0640 mRNA cleavage stimulat 40.5 3.3E+02 0.0072 25.9 10.5 24 339-362 272-295 (430)
221 PF09826 Beta_propel: Beta pro 39.9 4.5E+02 0.0097 27.3 17.9 83 350-436 248-335 (521)
222 PF15525 DUF4652: Domain of un 39.5 2.7E+02 0.0058 24.5 11.2 81 236-316 79-162 (200)
223 KOG0279 G protein beta subunit 39.5 3.3E+02 0.0071 25.6 15.1 145 184-362 116-266 (315)
224 KOG0318 WD40 repeat stress pro 39.0 4.5E+02 0.0097 27.0 22.2 137 185-361 375-520 (603)
225 PF08662 eIF2A: Eukaryotic tra 38.0 2.6E+02 0.0057 24.4 8.9 29 339-369 111-142 (194)
226 KOG0282 mRNA splicing factor [ 37.9 1.8E+02 0.0039 29.3 8.2 62 228-305 269-333 (503)
227 KOG0278 Serine/threonine kinas 37.6 3.4E+02 0.0073 25.1 12.8 141 245-420 165-308 (334)
228 PF13859 BNR_3: BNR repeat-lik 36.7 3.9E+02 0.0084 25.6 13.8 219 179-411 3-269 (310)
229 KOG0265 U5 snRNP-specific prot 36.6 3.8E+02 0.0082 25.5 11.2 61 228-307 58-125 (338)
230 PF07433 DUF1513: Protein of u 36.6 3.9E+02 0.0083 25.5 20.4 223 151-395 30-276 (305)
231 COG3391 Uncharacterized conser 36.4 4.3E+02 0.0092 26.0 19.9 149 183-363 84-244 (381)
232 COG3391 Uncharacterized conser 35.8 4.4E+02 0.0095 25.9 16.9 138 227-395 84-227 (381)
233 PF13088 BNR_2: BNR repeat-lik 35.4 3.5E+02 0.0076 24.7 11.4 189 184-391 58-275 (275)
234 KOG0647 mRNA export protein (c 35.2 4E+02 0.0087 25.3 11.6 31 228-264 83-113 (347)
235 COG0823 TolB Periplasmic compo 32.1 5.4E+02 0.012 25.9 13.7 145 197-366 218-367 (425)
236 KOG1275 PAB-dependent poly(A) 31.9 1.2E+02 0.0026 33.1 6.4 74 265-361 135-208 (1118)
237 PF15525 DUF4652: Domain of un 31.4 3.6E+02 0.0079 23.7 10.5 78 195-275 86-170 (200)
238 KOG2394 WD40 protein DMR-N9 [G 31.1 3.8E+02 0.0083 27.6 9.3 51 339-397 301-354 (636)
239 KOG0639 Transducin-like enhanc 31.0 2.6E+02 0.0057 28.5 8.1 106 181-303 473-582 (705)
240 KOG3881 Uncharacterized conser 29.5 5.6E+02 0.012 25.2 12.1 149 230-416 162-323 (412)
241 KOG0282 mRNA splicing factor [ 29.1 1.7E+02 0.0037 29.4 6.5 62 276-361 269-333 (503)
242 KOG0647 mRNA export protein (c 27.9 5.4E+02 0.012 24.5 11.1 20 195-214 92-111 (347)
243 KOG1898 Splicing factor 3b, su 27.5 9.4E+02 0.02 27.2 15.3 90 333-435 939-1028(1205)
244 PF09910 DUF2139: Uncharacteri 27.2 5.5E+02 0.012 24.5 15.4 144 143-303 72-231 (339)
245 PRK10115 protease 2; Provision 26.8 8.3E+02 0.018 26.3 22.2 182 182-393 135-332 (686)
246 KOG0640 mRNA cleavage stimulat 26.4 5.4E+02 0.012 24.6 8.9 104 184-305 227-338 (430)
247 PF01011 PQQ: PQQ enzyme repea 26.4 1.6E+02 0.0034 17.9 4.4 23 341-364 2-26 (38)
248 KOG0285 Pleiotropic regulator 26.1 6.3E+02 0.014 24.7 17.1 218 138-411 162-389 (460)
249 PF00780 CNH: CNH domain; Int 25.5 5.2E+02 0.011 23.6 15.5 142 198-372 115-269 (275)
250 KOG1063 RNA polymerase II elon 25.1 6.5E+02 0.014 26.8 10.0 119 295-433 290-413 (764)
251 smart00564 PQQ beta-propeller 24.5 1.5E+02 0.0032 16.9 3.8 25 336-361 3-27 (33)
252 KOG0646 WD40 repeat protein [G 23.7 7.7E+02 0.017 24.9 15.8 199 178-409 85-305 (476)
253 KOG1517 Guanine nucleotide bin 23.6 3.3E+02 0.0072 30.6 7.9 77 257-358 1154-1239(1387)
254 KOG0263 Transcription initiati 23.3 7.9E+02 0.017 26.3 10.4 50 245-303 599-650 (707)
255 KOG0299 U3 snoRNP-associated p 23.0 7.9E+02 0.017 24.8 12.4 136 224-396 209-347 (479)
256 PF04616 Glyco_hydro_43: Glyco 22.5 6E+02 0.013 23.3 18.9 184 220-420 11-222 (286)
257 TIGR03032 conserved hypothetic 22.4 4.2E+02 0.0092 25.5 7.6 91 216-318 148-247 (335)
258 KOG0296 Angio-associated migra 22.1 7.5E+02 0.016 24.2 15.2 103 228-361 75-181 (399)
259 PF03022 MRJP: Major royal jel 21.4 6.9E+02 0.015 23.5 20.7 189 196-394 33-254 (287)
260 PF14312 FG-GAP_2: FG-GAP repe 21.3 1.7E+02 0.0036 19.3 3.5 19 377-396 17-35 (49)
261 KOG0308 Conserved WD40 repeat- 21.1 2.9E+02 0.0062 29.1 6.6 74 276-361 129-204 (735)
262 PF14298 DUF4374: Domain of un 20.6 8.8E+02 0.019 24.4 13.0 59 292-361 365-427 (435)
263 KOG0278 Serine/threonine kinas 20.0 7.1E+02 0.015 23.1 14.1 58 276-356 235-295 (334)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.1e-43 Score=362.28 Aligned_cols=260 Identities=29% Similarity=0.449 Sum_probs=229.4
Q ss_pred CceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCcc----CCceEEEEECCCCceecCCCCCCCcccee
Q 043540 148 LKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEV----HGNAIYRYNLLTNTWSTGMTMNTPRCLFG 223 (437)
Q Consensus 148 ~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~----~~~~v~~yd~~t~~W~~~~~~~~~r~~~~ 223 (437)
...++.|||.++.|..+++||.+|+.++ ++++++.||++||.. ..+.+++|||.+|+|+.+++|+.+|..++
T Consensus 300 ~~~ve~yd~~~~~w~~~a~m~~~r~~~~----~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~ 375 (571)
T KOG4441|consen 300 LRSVECYDPKTNEWSSLAPMPSPRCRVG----VAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFG 375 (571)
T ss_pred cceeEEecCCcCcEeecCCCCccccccc----EEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccce
Confidence 4678999999999999999999988554 488999999999966 35799999999999999999999999999
Q ss_pred eEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCC
Q 043540 224 SASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLET 303 (437)
Q Consensus 224 ~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~ 303 (437)
++++++.||++||.++.. .++++|+|||.+++|+.+++|+.+|..+++++++|+||++||.+ +....++++++|||.+
T Consensus 376 v~~l~g~iYavGG~dg~~-~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~-~~~~~l~sve~YDP~t 453 (571)
T KOG4441|consen 376 VAVLDGKLYAVGGFDGEK-SLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGD-GSSNCLNSVECYDPET 453 (571)
T ss_pred eEEECCEEEEEecccccc-ccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcC-CCccccceEEEEcCCC
Confidence 999999999999999664 68999999999999999999999999999999999999999987 3334899999999999
Q ss_pred CceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCC-----CCeEEEEeCCCCcEEEccCCCCcccCCCcc
Q 043540 304 GKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHE-----KEEVRKFDKGRKLWRTLGRLPEQASSMNGW 378 (437)
Q Consensus 304 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~-----~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~ 378 (437)
++|+.+++|+.+|.+ +++++++++||++||. ...+++|||++++|+.+..|+.++.
T Consensus 454 ~~W~~~~~M~~~R~~--------------~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs----- 514 (571)
T KOG4441|consen 454 NTWTLIAPMNTRRSG--------------FGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRS----- 514 (571)
T ss_pred CceeecCCccccccc--------------ceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccc-----
Confidence 999999999999999 7899999999999984 3469999999999999999988876
Q ss_pred cEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCceecCccCCCceEeeeEEe
Q 043540 379 GLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKLLARQPMCGFVFNCTVM 435 (437)
Q Consensus 379 ~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~v~ 435 (437)
++++++.+++||++||.+ +......+-.||+.+++|+.++.+...+...+|+++
T Consensus 515 ~~g~~~~~~~ly~vGG~~---~~~~l~~ve~ydp~~d~W~~~~~~~~~~~~~~~~~~ 568 (571)
T KOG4441|consen 515 AVGVVVLGGKLYAVGGFD---GNNNLNTVECYDPETDTWTEVTEPESGRGGAGVAVI 568 (571)
T ss_pred cccEEEECCEEEEEeccc---CccccceeEEcCCCCCceeeCCCccccccCcceEEe
Confidence 466788999999999965 333444455679999999999985556666666554
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=7.3e-41 Score=342.87 Aligned_cols=249 Identities=15% Similarity=0.229 Sum_probs=215.4
Q ss_pred eEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCcc----CCceEEEEECCCCceecCCCCCCCccceeeE
Q 043540 150 EWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEV----HGNAIYRYNLLTNTWSTGMTMNTPRCLFGSA 225 (437)
Q Consensus 150 ~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~----~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~ 225 (437)
.++.|||.+++|..+++||.++..+ .++++++.||++||.. ..+.+++|||.+++|..+++|+.+|..++++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~----~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~ 348 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINY----ASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA 348 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccce----EEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE
Confidence 5789999999999999999988644 3488899999999953 2478999999999999999999999999999
Q ss_pred EECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEECCEEEEEecccCCC----------------
Q 043540 226 SLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFMDGKFYVIGGIGEGS---------------- 289 (437)
Q Consensus 226 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~---------------- 289 (437)
+++++||++||.++. ..++++++|||.+++|+.+++||.+|..+++++++|+||++||.+...
T Consensus 349 ~~~g~IYviGG~~~~-~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 349 VIDDTIYAIGGQNGT-NVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred EECCEEEEECCcCCC-CCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccccc
Confidence 999999999998754 357899999999999999999999999999999999999999976211
Q ss_pred CccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCC------CeEEEEeCCC-CcE
Q 043540 290 SAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEK------EEVRKFDKGR-KLW 362 (437)
Q Consensus 290 ~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~------~~v~~yd~~~-~~W 362 (437)
....+.+++|||++++|+.+++|+.+|.. +++++++|+||++||.. ..+++|||++ ++|
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~--------------~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W 493 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGTIR--------------PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGW 493 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCccccc--------------CcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCe
Confidence 11357899999999999999999999988 77899999999999842 3579999999 899
Q ss_pred EEccCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCceecCccCCCce
Q 043540 363 RTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKLLARQPMCGF 428 (437)
Q Consensus 363 ~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~ 428 (437)
+.+++||.++. ++++++++|+||++||.+.. ..+-.||+.+++|+.+++.....+
T Consensus 494 ~~~~~m~~~r~-----~~~~~~~~~~iyv~Gg~~~~------~~~e~yd~~~~~W~~~~~~~~~~~ 548 (557)
T PHA02713 494 ELITTTESRLS-----ALHTILHDNTIMMLHCYESY------MLQDTFNVYTYEWNHICHQHSNSY 548 (557)
T ss_pred eEccccCcccc-----cceeEEECCEEEEEeeecce------eehhhcCcccccccchhhhcCCce
Confidence 99999999876 46677899999999998631 245679999999999987655443
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=7.3e-38 Score=319.48 Aligned_cols=231 Identities=27% Similarity=0.448 Sum_probs=207.4
Q ss_pred EeCCEEEEEcCccC----CceEEEEECCCCceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcE
Q 043540 182 AVGTELLVFGKEVH----GNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTW 257 (437)
Q Consensus 182 ~~~~~lyv~GG~~~----~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W 257 (437)
...+.||++||... .+.+..|||.+++|..+++||.+|..+++++++++||++||++.....++++|+||+.+++|
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCce
Confidence 45688999999653 57899999999999999999999999999999999999999984334689999999999999
Q ss_pred EecCCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEE
Q 043540 258 MPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV 337 (437)
Q Consensus 258 ~~~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (437)
+.+++|+.+|..+++++++|+||++||.+ +...++++++||+.+++|+.+++|+.+|.+ +++++
T Consensus 362 ~~~a~M~~~R~~~~v~~l~g~iYavGG~d--g~~~l~svE~YDp~~~~W~~va~m~~~r~~--------------~gv~~ 425 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAVLDGKLYAVGGFD--GEKSLNSVECYDPVTNKWTPVAPMLTRRSG--------------HGVAV 425 (571)
T ss_pred eccCCccCccccceeEEECCEEEEEeccc--cccccccEEEecCCCCcccccCCCCcceee--------------eEEEE
Confidence 99999999999999999999999999997 667888999999999999999999999888 78999
Q ss_pred ECCEEEEEeC------CCCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecC
Q 043540 338 VNNELYAADH------EKEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPD 411 (437)
Q Consensus 338 ~~~~ly~~gg------~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d 411 (437)
++|+||++|| ..+.+++|||.+++|+.+++|+.++. ++++++++++||++||.+. ......+-.||
T Consensus 426 ~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~-----~~g~a~~~~~iYvvGG~~~---~~~~~~VE~yd 497 (571)
T KOG4441|consen 426 LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS-----GFGVAVLNGKIYVVGGFDG---TSALSSVERYD 497 (571)
T ss_pred ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccc-----cceEEEECCEEEEECCccC---CCccceEEEEc
Confidence 9999999998 34689999999999999999999986 4567889999999999884 22223377899
Q ss_pred CCCCCceecCccCCCceEeeeEEee
Q 043540 412 EGPPHWKLLARQPMCGFVFNCTVMG 436 (437)
Q Consensus 412 ~~~~~W~~l~~~p~~~~~~~~~v~~ 436 (437)
+.+++|+.++.|+.++..+++++.+
T Consensus 498 p~~~~W~~v~~m~~~rs~~g~~~~~ 522 (571)
T KOG4441|consen 498 PETNQWTMVAPMTSPRSAVGVVVLG 522 (571)
T ss_pred CCCCceeEcccCccccccccEEEEC
Confidence 9999999999999999998887654
No 4
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=7.1e-37 Score=297.51 Aligned_cols=254 Identities=23% Similarity=0.441 Sum_probs=202.3
Q ss_pred cCCCCeeeCCC----CCCccccccCCceeEEeCCEEEEEcCccC-----CceEEEEECCCCceecCCCCC-CCcc---ce
Q 043540 156 PIHHRWMHLPP----MNASDCFMCADKESLAVGTELLVFGKEVH-----GNAIYRYNLLTNTWSTGMTMN-TPRC---LF 222 (437)
Q Consensus 156 p~~~~W~~l~~----~p~~~~~~~~~~~~~~~~~~lyv~GG~~~-----~~~v~~yd~~t~~W~~~~~~~-~~r~---~~ 222 (437)
+...+|.+++. +|.+|..+ ++++++++|||+||... .+++++||+.+++|+.++++. .||. .|
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h----~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~ 79 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSH----GIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGV 79 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcc----eEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCce
Confidence 46678999876 67777654 34888999999999632 368999999999999988764 3443 68
Q ss_pred eeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCC-----CcCCcCeeEEEECCEEEEEecccCCC----CccC
Q 043540 223 GSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSM-----HKARKMCSGVFMDGKFYVIGGIGEGS----SAML 293 (437)
Q Consensus 223 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~-----~~~r~~~~~~~~~g~lyv~GG~~~~~----~~~~ 293 (437)
++++++++|||+||.+... .++++++||+.+++|+.+++| |.+|..|++++++++|||+||..... ...+
T Consensus 80 ~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 158 (341)
T PLN02153 80 RMVAVGTKLYIFGGRDEKR-EFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERF 158 (341)
T ss_pred EEEEECCEEEEECCCCCCC-ccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCccc
Confidence 8899999999999987553 478999999999999999887 78899999999999999999986211 1235
Q ss_pred CeEEEEECCCCceEecCCCC---CcccCCCCcccccccCCCCCEEEEECCEEEEEeCC-------------CCeEEEEeC
Q 043540 294 TDVEMYDLETGKWTQITDMF---PARIGSDGVSVISAAGEAPPLLAVVNNELYAADHE-------------KEEVRKFDK 357 (437)
Q Consensus 294 ~~v~~yd~~~~~W~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~-------------~~~v~~yd~ 357 (437)
+++++||+++++|+.++.+. .+|.+ +.+++++++||++||. .+++++||+
T Consensus 159 ~~v~~yd~~~~~W~~l~~~~~~~~~r~~--------------~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~ 224 (341)
T PLN02153 159 RTIEAYNIADGKWVQLPDPGENFEKRGG--------------AGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDP 224 (341)
T ss_pred ceEEEEECCCCeEeeCCCCCCCCCCCCc--------------ceEEEECCeEEEEeccccccccCCccceecCceEEEEc
Confidence 78999999999999998754 56666 6788899999999763 357999999
Q ss_pred CCCcEEEccC---CCCcccCCCcccEEEEEeCCEEEEEcCCCCC------CCCeeEEEeeecCCCCCCceecC-----cc
Q 043540 358 GRKLWRTLGR---LPEQASSMNGWGLAFRACGDQLIVIGGPRDS------GGGIVELNGWVPDEGPPHWKLLA-----RQ 423 (437)
Q Consensus 358 ~~~~W~~v~~---lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~------~~~~~~~~~~~~d~~~~~W~~l~-----~~ 423 (437)
++++|++++. +|.++. ++++++++++|||+||.... +......++|.||+.+++|+.++ ++
T Consensus 225 ~~~~W~~~~~~g~~P~~r~-----~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~ 299 (341)
T PLN02153 225 ASGKWTEVETTGAKPSARS-----VFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAM 299 (341)
T ss_pred CCCcEEeccccCCCCCCcc-----eeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCC
Confidence 9999999974 455543 46677899999999997421 12333457999999999999985 67
Q ss_pred CCCceEeeeE
Q 043540 424 PMCGFVFNCT 433 (437)
Q Consensus 424 p~~~~~~~~~ 433 (437)
|.+++.|+++
T Consensus 300 pr~~~~~~~~ 309 (341)
T PLN02153 300 PRGWTAYTTA 309 (341)
T ss_pred CCcccccccc
Confidence 7777766654
No 5
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=3.6e-36 Score=308.33 Aligned_cols=217 Identities=20% Similarity=0.258 Sum_probs=190.3
Q ss_pred ceEEEEECCCCceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEEC
Q 043540 197 NAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFMD 276 (437)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~ 276 (437)
..+++||+.+++|..+++||.+|..+++++++++|||+||.+.....++++++||+.+++|..+++|+.+|..+++++++
T Consensus 272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~ 351 (557)
T PHA02713 272 PCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID 351 (557)
T ss_pred CCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC
Confidence 46899999999999999999999999999999999999998644445789999999999999999999999999999999
Q ss_pred CEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCC-------
Q 043540 277 GKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEK------- 349 (437)
Q Consensus 277 g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~------- 349 (437)
|+||++||.+ +...++++++||+.+++|+.+++||.++.. +++++++|+||++||..
T Consensus 352 g~IYviGG~~--~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~--------------~~~~~~~g~IYviGG~~~~~~~~~ 415 (557)
T PHA02713 352 DTIYAIGGQN--GTNVERTIECYTMGDDKWKMLPDMPIALSS--------------YGMCVLDQYIYIIGGRTEHIDYTS 415 (557)
T ss_pred CEEEEECCcC--CCCCCceEEEEECCCCeEEECCCCCccccc--------------ccEEEECCEEEEEeCCCccccccc
Confidence 9999999986 334577899999999999999999999988 67889999999999842
Q ss_pred ----------------CeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCC
Q 043540 350 ----------------EEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEG 413 (437)
Q Consensus 350 ----------------~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~ 413 (437)
+.+++|||++++|+.+++|+.++. ++++++++|+|||+||.+... .....+.+||+.
T Consensus 416 ~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~-----~~~~~~~~~~IYv~GG~~~~~--~~~~~ve~Ydp~ 488 (557)
T PHA02713 416 VHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI-----RPGVVSHKDDIYVVCDIKDEK--NVKTCIFRYNTN 488 (557)
T ss_pred ccccccccccccccccceEEEECCCCCeEeecCCCCcccc-----cCcEEEECCEEEEEeCCCCCC--ccceeEEEecCC
Confidence 469999999999999999998875 456778999999999976321 112246789999
Q ss_pred C-CCceecCccCCCceEeeeEEee
Q 043540 414 P-PHWKLLARQPMCGFVFNCTVMG 436 (437)
Q Consensus 414 ~-~~W~~l~~~p~~~~~~~~~v~~ 436 (437)
+ ++|+.+++||..|..+++++++
T Consensus 489 ~~~~W~~~~~m~~~r~~~~~~~~~ 512 (557)
T PHA02713 489 TYNGWELITTTESRLSALHTILHD 512 (557)
T ss_pred CCCCeeEccccCcccccceeEEEC
Confidence 9 8999999999999999887654
No 6
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=4.3e-36 Score=309.49 Aligned_cols=252 Identities=17% Similarity=0.242 Sum_probs=212.4
Q ss_pred eEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCcc----CCceEEEEECCCCceecCCCCCCCccceeeE
Q 043540 150 EWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEV----HGNAIYRYNLLTNTWSTGMTMNTPRCLFGSA 225 (437)
Q Consensus 150 ~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~----~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~ 225 (437)
....|++..++|..+++.+...+ +.++++++.||++||.. ..+++++||+.+++|..+++|+.+|..|+++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~ 339 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIHYVYC-----FGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT 339 (534)
T ss_pred eeeecchhhhhcccccCcccccc-----ceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE
Confidence 45578999999998877664332 23488999999999853 2358999999999999999999999999999
Q ss_pred EECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCc
Q 043540 226 SLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGK 305 (437)
Q Consensus 226 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~ 305 (437)
+++++||++||.+.. ..++++++||+.+++|+.+++||.+|..++++.++|+||++||.. .....++.+++||+.+++
T Consensus 340 ~~~~~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~-~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 340 VFNNRIYVIGGIYNS-ISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGIS-KNDELLKTVECFSLNTNK 417 (534)
T ss_pred EECCEEEEEeCCCCC-EecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcC-CCCcccceEEEEeCCCCe
Confidence 999999999998743 357899999999999999999999999999999999999999975 233457889999999999
Q ss_pred eEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCC--------CeEEEEeCCCCcEEEccCCCCcccCCCc
Q 043540 306 WTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEK--------EEVRKFDKGRKLWRTLGRLPEQASSMNG 377 (437)
Q Consensus 306 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~--------~~v~~yd~~~~~W~~v~~lp~~~~~~~~ 377 (437)
|+.++++|.+|.+ +++++++++||++||.. +.+++||+.+++|+.++.++.++.
T Consensus 418 W~~~~~~p~~r~~--------------~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~---- 479 (534)
T PHA03098 418 WSKGSPLPISHYG--------------GCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRI---- 479 (534)
T ss_pred eeecCCCCccccC--------------ceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccc----
Confidence 9999999999988 67889999999999842 359999999999999998887654
Q ss_pred ccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCceecCccCCCceEe
Q 043540 378 WGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKLLARQPMCGFVF 430 (437)
Q Consensus 378 ~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~ 430 (437)
++++++.+++|||+||..... ....++.||+.+++|+.++.+|.-....
T Consensus 480 -~~~~~~~~~~iyv~GG~~~~~---~~~~v~~yd~~~~~W~~~~~~p~~~~~~ 528 (534)
T PHA03098 480 -NASLCIFNNKIYVVGGDKYEY---YINEIEVYDDKTNTWTLFCKFPKVIGSL 528 (534)
T ss_pred -cceEEEECCEEEEEcCCcCCc---ccceeEEEeCCCCEEEecCCCcccccce
Confidence 455667899999999986321 2346788999999999999888644433
No 7
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.4e-35 Score=288.44 Aligned_cols=265 Identities=24% Similarity=0.367 Sum_probs=201.7
Q ss_pred hhcCcchHHhhhhcCccccEEEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCcc---CCce
Q 043540 122 LIQSGELYRLRREMGIIEHWVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEV---HGNA 198 (437)
Q Consensus 122 li~s~~~y~~~~~~~~~~~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~---~~~~ 198 (437)
++.++.+|++||....... ..++++.||+.+++|..+++++......+..+++++++++||+|||.. ..++
T Consensus 29 ~~~~~~iyv~GG~~~~~~~------~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~ 102 (341)
T PLN02153 29 AVVGDKLYSFGGELKPNEH------IDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSD 102 (341)
T ss_pred EEECCEEEEECCccCCCCc------eeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCc
Confidence 4567899999998543221 235789999999999999887532222122345688999999999953 3468
Q ss_pred EEEEECCCCceecCCCC-----CCCccceeeEEECCEEEEEeccCCCC-----CCCceEEEEECCCCcEEecCCCC---c
Q 043540 199 IYRYNLLTNTWSTGMTM-----NTPRCLFGSASLGEIAILAGGCDPRG-----KLLKSAELYNSITGTWMPISSMH---K 265 (437)
Q Consensus 199 v~~yd~~t~~W~~~~~~-----~~~r~~~~~~~~~~~iyv~GG~~~~~-----~~~~~~~~yd~~t~~W~~~~~~~---~ 265 (437)
+++||+.+++|+.+++| |.+|..|++++++++|||+||.+..+ ..++++++||+++++|+.++.+. .
T Consensus 103 v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~ 182 (341)
T PLN02153 103 FYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFE 182 (341)
T ss_pred EEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCC
Confidence 99999999999999877 78999999999999999999986432 23578999999999999998764 6
Q ss_pred CCcCeeEEEECCEEEEEecccC-----C-CCccCCeEEEEECCCCceEecCC---CCCcccCCCCcccccccCCCCCEEE
Q 043540 266 ARKMCSGVFMDGKFYVIGGIGE-----G-SSAMLTDVEMYDLETGKWTQITD---MFPARIGSDGVSVISAAGEAPPLLA 336 (437)
Q Consensus 266 ~r~~~~~~~~~g~lyv~GG~~~-----~-~~~~~~~v~~yd~~~~~W~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (437)
+|..+++++++++|||+||... + .....+++++||+++++|++++. +|.+|.. ++++
T Consensus 183 ~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~--------------~~~~ 248 (341)
T PLN02153 183 KRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSV--------------FAHA 248 (341)
T ss_pred CCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcce--------------eeeE
Confidence 7889999999999999999641 1 11235789999999999999974 5777777 6788
Q ss_pred EECCEEEEEeCC--------------CCeEEEEeCCCCcEEEccC-----CCCcccCCCcccEEEEEeCCEEEEEcCCCC
Q 043540 337 VVNNELYAADHE--------------KEEVRKFDKGRKLWRTLGR-----LPEQASSMNGWGLAFRACGDQLIVIGGPRD 397 (437)
Q Consensus 337 ~~~~~ly~~gg~--------------~~~v~~yd~~~~~W~~v~~-----lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~ 397 (437)
+++++||++||. .+++++||+++++|+.+.. +|..+. +++++.+..+++|||+||...
T Consensus 249 ~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~---~~~~~~v~~~~~~~~~gG~~~ 325 (341)
T PLN02153 249 VVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWT---AYTTATVYGKNGLLMHGGKLP 325 (341)
T ss_pred EECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccc---cccccccCCcceEEEEcCcCC
Confidence 999999999984 2479999999999999863 333221 233443333459999999975
Q ss_pred CCCCeeEEEeeecC
Q 043540 398 SGGGIVELNGWVPD 411 (437)
Q Consensus 398 ~~~~~~~~~~~~~d 411 (437)
..... .++|.|+
T Consensus 326 ~~~~~--~~~~~~~ 337 (341)
T PLN02153 326 TNERT--DDLYFYA 337 (341)
T ss_pred CCccc--cceEEEe
Confidence 43333 4455554
No 8
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=5.9e-35 Score=284.92 Aligned_cols=254 Identities=20% Similarity=0.277 Sum_probs=194.4
Q ss_pred CCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEEC--CCCceecCCCCC-CCccceeeEEECCEEEEEeccCCC
Q 043540 164 LPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNL--LTNTWSTGMTMN-TPRCLFGSASLGEIAILAGGCDPR 240 (437)
Q Consensus 164 l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~--~t~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~ 240 (437)
+|+||.++...+ +++++++|||+||.. .+.+++||+ .+++|+.+++|| .+|..+++++++++|||+||+...
T Consensus 1 ~~~lp~~~~~~~----~~~~~~~vyv~GG~~-~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~ 75 (346)
T TIGR03547 1 LPDLPVGFKNGT----GAIIGDKVYVGLGSA-GTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKA 75 (346)
T ss_pred CCCCCccccCce----EEEECCEEEEEcccc-CCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCC
Confidence 467887776533 368899999999864 367999996 678999999999 589999999999999999998542
Q ss_pred C-----CCCceEEEEECCCCcEEecC-CCCcCCcCeeEE-EECCEEEEEecccCCC--C---------------------
Q 043540 241 G-----KLLKSAELYNSITGTWMPIS-SMHKARKMCSGV-FMDGKFYVIGGIGEGS--S--------------------- 290 (437)
Q Consensus 241 ~-----~~~~~~~~yd~~t~~W~~~~-~~~~~r~~~~~~-~~~g~lyv~GG~~~~~--~--------------------- 290 (437)
. ..++++++||+.+++|+.++ .+|.+|..++++ +++++||++||..... .
T Consensus 76 ~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (346)
T TIGR03547 76 NSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAA 155 (346)
T ss_pred CCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHH
Confidence 2 24789999999999999997 456667777666 7899999999975210 0
Q ss_pred ---------ccCCeEEEEECCCCceEecCCCCC-cccCCCCcccccccCCCCCEEEEECCEEEEEeCCC------CeEEE
Q 043540 291 ---------AMLTDVEMYDLETGKWTQITDMFP-ARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEK------EEVRK 354 (437)
Q Consensus 291 ---------~~~~~v~~yd~~~~~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~------~~v~~ 354 (437)
...+.+++||+.+++|+.+++||. ++.. +++++++++||++||.. ..++.
T Consensus 156 ~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~--------------~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 221 (346)
T TIGR03547 156 YFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAG--------------SAIVHKGNKLLLINGEIKPGLRTAEVKQ 221 (346)
T ss_pred HhCCChhHcCccceEEEEECCCCceeECccCCCCcCCC--------------ceEEEECCEEEEEeeeeCCCccchheEE
Confidence 013789999999999999999986 5666 67889999999999842 34555
Q ss_pred Ee--CCCCcEEEccCCCCcccC-CCc-ccEEEEEeCCEEEEEcCCCCCCC--------------CeeEEEeeecCCCCCC
Q 043540 355 FD--KGRKLWRTLGRLPEQASS-MNG-WGLAFRACGDQLIVIGGPRDSGG--------------GIVELNGWVPDEGPPH 416 (437)
Q Consensus 355 yd--~~~~~W~~v~~lp~~~~~-~~~-~~~a~~~~~~~l~v~GG~~~~~~--------------~~~~~~~~~~d~~~~~ 416 (437)
|| +++++|..++.||.++.. ..+ .++++++++++|||+||.+..+. ......+..||+.+++
T Consensus 222 y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~ 301 (346)
T TIGR03547 222 YLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGK 301 (346)
T ss_pred EEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCc
Confidence 65 577899999999876532 111 24556788999999999863221 0001234556777999
Q ss_pred ceecCccCCCceEeeeEEee
Q 043540 417 WKLLARQPMCGFVFNCTVMG 436 (437)
Q Consensus 417 W~~l~~~p~~~~~~~~~v~~ 436 (437)
|+.+++||.++..+++++++
T Consensus 302 W~~~~~lp~~~~~~~~~~~~ 321 (346)
T TIGR03547 302 WSKVGKLPQGLAYGVSVSWN 321 (346)
T ss_pred ccccCCCCCCceeeEEEEcC
Confidence 99999999998887776543
No 9
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.2e-34 Score=292.36 Aligned_cols=255 Identities=21% Similarity=0.366 Sum_probs=203.4
Q ss_pred EEEeccCC----CCeeeCCC---CCCccccccCCceeEEeCCEEEEEcCcc-----CCceEEEEECCCCceecCCC---C
Q 043540 151 WEAFDPIH----HRWMHLPP---MNASDCFMCADKESLAVGTELLVFGKEV-----HGNAIYRYNLLTNTWSTGMT---M 215 (437)
Q Consensus 151 ~~~yDp~~----~~W~~l~~---~p~~~~~~~~~~~~~~~~~~lyv~GG~~-----~~~~v~~yd~~t~~W~~~~~---~ 215 (437)
++.+||.+ ++|..+++ +|.+|..| +++++++.||++||.. ..+++++||+.+++|+.+++ +
T Consensus 139 ~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h----~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~ 214 (470)
T PLN02193 139 AYISLPSTPKLLGKWIKVEQKGEGPGLRCSH----GIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDV 214 (470)
T ss_pred EEEecCCChhhhceEEEcccCCCCCCCcccc----EEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCC
Confidence 45557755 79999876 46677654 4588899999999953 22579999999999998764 3
Q ss_pred CC-CccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCC---CcCCcCeeEEEECCEEEEEecccCCCCc
Q 043540 216 NT-PRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSM---HKARKMCSGVFMDGKFYVIGGIGEGSSA 291 (437)
Q Consensus 216 ~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~---~~~r~~~~~~~~~g~lyv~GG~~~~~~~ 291 (437)
|. .|..|++++++++|||+||.+.. ..++++++||+.+++|+.++++ |.+|..|++++++++|||+||.. ...
T Consensus 215 P~~~~~~~~~v~~~~~lYvfGG~~~~-~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~--~~~ 291 (470)
T PLN02193 215 PHLSCLGVRMVSIGSTLYVFGGRDAS-RQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVS--ATA 291 (470)
T ss_pred CCCcccceEEEEECCEEEEECCCCCC-CCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCC--CCC
Confidence 33 25678899999999999998754 3578999999999999999887 78999999999999999999986 344
Q ss_pred cCCeEEEEECCCCceEecCC---CCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCC----CCeEEEEeCCCCcEEE
Q 043540 292 MLTDVEMYDLETGKWTQITD---MFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHE----KEEVRKFDKGRKLWRT 364 (437)
Q Consensus 292 ~~~~v~~yd~~~~~W~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~----~~~v~~yd~~~~~W~~ 364 (437)
.++++++||+.+++|+.++. ++.+|.+ +.+++++++||++||. .+++++||+++++|++
T Consensus 292 ~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~--------------~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~ 357 (470)
T PLN02193 292 RLKTLDSYNIVDKKWFHCSTPGDSFSIRGG--------------AGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQ 357 (470)
T ss_pred CcceEEEEECCCCEEEeCCCCCCCCCCCCC--------------cEEEEECCcEEEEECCCCCccCceEEEECCCCEEEE
Confidence 56789999999999999874 5566666 7788999999999874 3689999999999999
Q ss_pred ccCC---CCcccCCCcccEEEEEeCCEEEEEcCCCCCC------CCeeEEEeeecCCCCCCceecCcc------CCCceE
Q 043540 365 LGRL---PEQASSMNGWGLAFRACGDQLIVIGGPRDSG------GGIVELNGWVPDEGPPHWKLLARQ------PMCGFV 429 (437)
Q Consensus 365 v~~l---p~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~------~~~~~~~~~~~d~~~~~W~~l~~~------p~~~~~ 429 (437)
+..+ |.++. ++++++++++|||+||..... ......++|.||+.+++|+.++.+ |.+|..
T Consensus 358 ~~~~g~~P~~R~-----~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~ 432 (470)
T PLN02193 358 VETFGVRPSERS-----VFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGW 432 (470)
T ss_pred eccCCCCCCCcc-----eeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCcc
Confidence 9765 44443 466778999999999986321 123445689999999999999643 566665
Q ss_pred ee
Q 043540 430 FN 431 (437)
Q Consensus 430 ~~ 431 (437)
|+
T Consensus 433 ~~ 434 (470)
T PLN02193 433 TA 434 (470)
T ss_pred cc
Confidence 54
No 10
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=6.7e-35 Score=284.51 Aligned_cols=255 Identities=18% Similarity=0.255 Sum_probs=193.8
Q ss_pred hhcCcchHHhhhhcCccccEEEEEecCceEEEecc--CCCCeeeCCCCCC-ccccccCCceeEEeCCEEEEEcCcc----
Q 043540 122 LIQSGELYRLRREMGIIEHWVYFSCKLKEWEAFDP--IHHRWMHLPPMNA-SDCFMCADKESLAVGTELLVFGKEV---- 194 (437)
Q Consensus 122 li~s~~~y~~~~~~~~~~~~l~~~~~~~~~~~yDp--~~~~W~~l~~~p~-~~~~~~~~~~~~~~~~~lyv~GG~~---- 194 (437)
++.++.+|+++|... .+++.||+ .+++|..+++||. +|..+ .+++++++|||+||..
T Consensus 14 ~~~~~~vyv~GG~~~------------~~~~~~d~~~~~~~W~~l~~~p~~~R~~~----~~~~~~~~iYv~GG~~~~~~ 77 (346)
T TIGR03547 14 AIIGDKVYVGLGSAG------------TSWYKLDLKKPSKGWQKIADFPGGPRNQA----VAAAIDGKLYVFGGIGKANS 77 (346)
T ss_pred EEECCEEEEEccccC------------CeeEEEECCCCCCCceECCCCCCCCcccc----eEEEECCEEEEEeCCCCCCC
Confidence 356889999988632 34677885 6789999999984 66543 3588999999999953
Q ss_pred -----CCceEEEEECCCCceecCC-CCCCCccceeeE-EECCEEEEEeccCCCC--------------------------
Q 043540 195 -----HGNAIYRYNLLTNTWSTGM-TMNTPRCLFGSA-SLGEIAILAGGCDPRG-------------------------- 241 (437)
Q Consensus 195 -----~~~~v~~yd~~t~~W~~~~-~~~~~r~~~~~~-~~~~~iyv~GG~~~~~-------------------------- 241 (437)
..+++++||+.+++|+.++ ++|.+|..++++ +++++||++||.+...
T Consensus 78 ~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (346)
T TIGR03547 78 EGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYF 157 (346)
T ss_pred CCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHh
Confidence 2468999999999999997 466777777666 7899999999975320
Q ss_pred -------CCCceEEEEECCCCcEEecCCCCc-CCcCeeEEEECCEEEEEecccCCCCccCCeEEEEE--CCCCceEecCC
Q 043540 242 -------KLLKSAELYNSITGTWMPISSMHK-ARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYD--LETGKWTQITD 311 (437)
Q Consensus 242 -------~~~~~~~~yd~~t~~W~~~~~~~~-~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd--~~~~~W~~~~~ 311 (437)
..++++++||+.+++|+.+++||. +|..+++++++++|||+||... .......++.|| +++++|+.+++
T Consensus 158 ~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~y~~~~~~~~W~~~~~ 236 (346)
T TIGR03547 158 SQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIK-PGLRTAEVKQYLFTGGKLEWNKLPP 236 (346)
T ss_pred CCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeC-CCccchheEEEEecCCCceeeecCC
Confidence 024789999999999999999996 6888889999999999999862 222233455555 57789999999
Q ss_pred CCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCC----------------------CeEEEEeCCCCcEEEccCCC
Q 043540 312 MFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEK----------------------EEVRKFDKGRKLWRTLGRLP 369 (437)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~----------------------~~v~~yd~~~~~W~~v~~lp 369 (437)
|+.+|... + .+...+.+++++|+||++||.. ..+++||+++++|+.+..||
T Consensus 237 m~~~r~~~------~-~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp 309 (346)
T TIGR03547 237 LPPPKSSS------Q-EGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLP 309 (346)
T ss_pred CCCCCCCc------c-ccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCC
Confidence 98776320 0 0011144678999999999842 25789999999999999999
Q ss_pred CcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEE
Q 043540 370 EQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVEL 405 (437)
Q Consensus 370 ~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~ 405 (437)
.++. ++++++++++|||+||.+..+.....+
T Consensus 310 ~~~~-----~~~~~~~~~~iyv~GG~~~~~~~~~~v 340 (346)
T TIGR03547 310 QGLA-----YGVSVSWNNGVLLIGGENSGGKAVTDV 340 (346)
T ss_pred CCce-----eeEEEEcCCEEEEEeccCCCCCEeeeE
Confidence 8764 345678899999999987554443333
No 11
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=2.1e-34 Score=278.24 Aligned_cols=259 Identities=15% Similarity=0.151 Sum_probs=198.3
Q ss_pred hhcCcchHHhhhhcCccccEEEE--EecCceEEEec-cCCC-CeeeCCCCCCccccccCCceeEEeCCEEEEEcCcc---
Q 043540 122 LIQSGELYRLRREMGIIEHWVYF--SCKLKEWEAFD-PIHH-RWMHLPPMNASDCFMCADKESLAVGTELLVFGKEV--- 194 (437)
Q Consensus 122 li~s~~~y~~~~~~~~~~~~l~~--~~~~~~~~~yD-p~~~-~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~--- 194 (437)
.+.++.+|++||.+....++--. -....+++.|+ +..+ +|..+++||.++..++ ++++++.||++||..
T Consensus 10 ~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~----~~~~~~~lyviGG~~~~~ 85 (323)
T TIGR03548 10 GIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGA----SVSVENGIYYIGGSNSSE 85 (323)
T ss_pred eEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceE----EEEECCEEEEEcCCCCCC
Confidence 35678899999987553221000 00124566664 4433 7999999999886543 378899999999853
Q ss_pred CCceEEEEECCCCce----ecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCC-cCCcC
Q 043540 195 HGNAIYRYNLLTNTW----STGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMH-KARKM 269 (437)
Q Consensus 195 ~~~~v~~yd~~t~~W----~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~-~~r~~ 269 (437)
..+++++||+.+++| +.+++||.+|..|++++++++|||+||.... ..++++++||+.+++|+.+++|| .+|..
T Consensus 86 ~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~p~~~r~~ 164 (323)
T TIGR03548 86 RFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNG-KPSNKSYLFNLETQEWFELPDFPGEPRVQ 164 (323)
T ss_pred CceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCC-ccCceEEEEcCCCCCeeECCCCCCCCCCc
Confidence 347899999999998 7889999999999999999999999997533 34789999999999999999988 47888
Q ss_pred eeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCC---cccCCCCcccccccCCCCCEEEEECCEEEEEe
Q 043540 270 CSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFP---ARIGSDGVSVISAAGEAPPLLAVVNNELYAAD 346 (437)
Q Consensus 270 ~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~g 346 (437)
+.+++++++|||+||... ....++++||+++++|+.+++|+. ++..+ ...++++.+++||++|
T Consensus 165 ~~~~~~~~~iYv~GG~~~---~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~-----------~~~~~~~~~~~iyv~G 230 (323)
T TIGR03548 165 PVCVKLQNELYVFGGGSN---IAYTDGYKYSPKKNQWQKVADPTTDSEPISLL-----------GAASIKINESLLLCIG 230 (323)
T ss_pred ceEEEECCEEEEEcCCCC---ccccceEEEecCCCeeEECCCCCCCCCceecc-----------ceeEEEECCCEEEEEC
Confidence 888999999999999861 223568999999999999987642 22210 0033455689999999
Q ss_pred CCC-------------------------------------CeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEE
Q 043540 347 HEK-------------------------------------EEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQL 389 (437)
Q Consensus 347 g~~-------------------------------------~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l 389 (437)
|.. +.+++||+.+++|+.++.+|...+ .++++++++++|
T Consensus 231 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r----~~~~~~~~~~~i 306 (323)
T TIGR03548 231 GFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFAR----CGAALLLTGNNI 306 (323)
T ss_pred CcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccccccccc----CchheEEECCEE
Confidence 853 469999999999999998874322 256678999999
Q ss_pred EEEcCCCCCCCCee
Q 043540 390 IVIGGPRDSGGGIV 403 (437)
Q Consensus 390 ~v~GG~~~~~~~~~ 403 (437)
|++||...++-.+.
T Consensus 307 yv~GG~~~pg~rt~ 320 (323)
T TIGR03548 307 FSINGELKPGVRTP 320 (323)
T ss_pred EEEeccccCCcCCc
Confidence 99999876655443
No 12
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=2.6e-34 Score=290.50 Aligned_cols=208 Identities=18% Similarity=0.241 Sum_probs=181.5
Q ss_pred EEeCCEEEEEcCcc---CCceEEEEECCCCceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcE
Q 043540 181 LAVGTELLVFGKEV---HGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTW 257 (437)
Q Consensus 181 ~~~~~~lyv~GG~~---~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W 257 (437)
+..++.||++||.. ..+.++.|||.+++|..+++|+.+|..+++++++++||++||.+.. +++++||+.+++|
T Consensus 268 ~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~----~sve~ydp~~n~W 343 (480)
T PHA02790 268 THVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNP----TSVERWFHGDAAW 343 (480)
T ss_pred EEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCC----CceEEEECCCCeE
Confidence 45899999999853 3467999999999999999999999999999999999999997532 6789999999999
Q ss_pred EecCCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEE
Q 043540 258 MPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV 337 (437)
Q Consensus 258 ~~~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (437)
+.+++||.+|..+++++++|+||++||... ..+.+++|||.+++|+.+++|+.+|.. +++++
T Consensus 344 ~~~~~l~~~r~~~~~~~~~g~IYviGG~~~----~~~~ve~ydp~~~~W~~~~~m~~~r~~--------------~~~~~ 405 (480)
T PHA02790 344 VNMPSLLKPRCNPAVASINNVIYVIGGHSE----TDTTTEYLLPNHDQWQFGPSTYYPHYK--------------SCALV 405 (480)
T ss_pred EECCCCCCCCcccEEEEECCEEEEecCcCC----CCccEEEEeCCCCEEEeCCCCCCcccc--------------ceEEE
Confidence 999999999999999999999999999752 136799999999999999999999988 67889
Q ss_pred ECCEEEEEeCCCCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCc
Q 043540 338 VNNELYAADHEKEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHW 417 (437)
Q Consensus 338 ~~~~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W 417 (437)
++|+||++||. +.+||+++++|+.+++|+.++. ++++++++|+|||+||.+.. .....+..||+.+++|
T Consensus 406 ~~~~IYv~GG~---~e~ydp~~~~W~~~~~m~~~r~-----~~~~~v~~~~IYviGG~~~~---~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 406 FGRRLFLVGRN---AEFYCESSNTWTLIDDPIYPRD-----NPELIIVDNKLLLIGGFYRG---SYIDTIEVYNNRTYSW 474 (480)
T ss_pred ECCEEEEECCc---eEEecCCCCcEeEcCCCCCCcc-----ccEEEEECCEEEEECCcCCC---cccceEEEEECCCCeE
Confidence 99999999974 7899999999999999998765 45677899999999998621 1123577899999999
Q ss_pred eecC
Q 043540 418 KLLA 421 (437)
Q Consensus 418 ~~l~ 421 (437)
+...
T Consensus 475 ~~~~ 478 (480)
T PHA02790 475 NIWD 478 (480)
T ss_pred EecC
Confidence 8764
No 13
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=3.2e-33 Score=281.85 Aligned_cols=268 Identities=22% Similarity=0.322 Sum_probs=204.2
Q ss_pred HHhhcCcchHHhhhhcCccccEEEEEecCceEEEeccCCCCeeeCCCCC-CccccccCCceeEEeCCEEEEEcCcc---C
Q 043540 120 RSLIQSGELYRLRREMGIIEHWVYFSCKLKEWEAFDPIHHRWMHLPPMN-ASDCFMCADKESLAVGTELLVFGKEV---H 195 (437)
Q Consensus 120 ~sli~s~~~y~~~~~~~~~~~~l~~~~~~~~~~~yDp~~~~W~~l~~~p-~~~~~~~~~~~~~~~~~~lyv~GG~~---~ 195 (437)
...+..+.+|++||....... ..+++++||+.+++|..++.+. .|+. .+..+++++++++||||||.. .
T Consensus 170 ~~~~~~~~iyv~GG~~~~~~~------~~~~v~~yD~~~~~W~~~~~~g~~P~~-~~~~~~~v~~~~~lYvfGG~~~~~~ 242 (470)
T PLN02193 170 GIAQVGNKIYSFGGEFTPNQP------IDKHLYVFDLETRTWSISPATGDVPHL-SCLGVRMVSIGSTLYVFGGRDASRQ 242 (470)
T ss_pred EEEEECCEEEEECCcCCCCCC------eeCcEEEEECCCCEEEeCCCCCCCCCC-cccceEEEEECCEEEEECCCCCCCC
Confidence 345667889999987533221 1256899999999999887642 2221 112345688999999999953 3
Q ss_pred CceEEEEECCCCceecCCCC---CCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCC---CCcCCcC
Q 043540 196 GNAIYRYNLLTNTWSTGMTM---NTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISS---MHKARKM 269 (437)
Q Consensus 196 ~~~v~~yd~~t~~W~~~~~~---~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~---~~~~r~~ 269 (437)
.+++++||+.+++|++++++ |.+|..|++++++++|||+||++... .++++++||+.+++|+.++. ++.+|..
T Consensus 243 ~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~-~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~ 321 (470)
T PLN02193 243 YNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATA-RLKTLDSYNIVDKKWFHCSTPGDSFSIRGG 321 (470)
T ss_pred CccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCC-CcceEEEEECCCCEEEeCCCCCCCCCCCCC
Confidence 57899999999999999887 88999999999999999999987643 57899999999999999874 6778999
Q ss_pred eeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCC---CCcccCCCCcccccccCCCCCEEEEECCEEEEEe
Q 043540 270 CSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDM---FPARIGSDGVSVISAAGEAPPLLAVVNNELYAAD 346 (437)
Q Consensus 270 ~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~g 346 (437)
+++++++++||++||.. ...++++++||+.+++|+.++.+ |.+|.. +++++++++||++|
T Consensus 322 ~~~~~~~gkiyviGG~~---g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~--------------~~~~~~~~~iyv~G 384 (470)
T PLN02193 322 AGLEVVQGKVWVVYGFN---GCEVDDVHYYDPVQDKWTQVETFGVRPSERSV--------------FASAAVGKHIVIFG 384 (470)
T ss_pred cEEEEECCcEEEEECCC---CCccCceEEEECCCCEEEEeccCCCCCCCcce--------------eEEEEECCEEEEEC
Confidence 99999999999999975 23468899999999999999754 677777 67889999999999
Q ss_pred CCC--------------CeEEEEeCCCCcEEEccCCCCc--ccCCCcccEE-EEEe--CCEEEEEcCCCCCCCCeeEEEe
Q 043540 347 HEK--------------EEVRKFDKGRKLWRTLGRLPEQ--ASSMNGWGLA-FRAC--GDQLIVIGGPRDSGGGIVELNG 407 (437)
Q Consensus 347 g~~--------------~~v~~yd~~~~~W~~v~~lp~~--~~~~~~~~~a-~~~~--~~~l~v~GG~~~~~~~~~~~~~ 407 (437)
|.. +++++||+.+++|+.+..++.. ....+++.++ ...+ ++.|+++||....+ ....++
T Consensus 385 G~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~--~~~~D~ 462 (470)
T PLN02193 385 GEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTN--DRFDDL 462 (470)
T ss_pred CccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCcc--ccccce
Confidence 842 4799999999999999866421 1112233321 2223 34699999987432 334567
Q ss_pred eecCCCC
Q 043540 408 WVPDEGP 414 (437)
Q Consensus 408 ~~~d~~~ 414 (437)
|.++.++
T Consensus 463 ~~~~~~~ 469 (470)
T PLN02193 463 FFYGIDS 469 (470)
T ss_pred EEEecCC
Confidence 7776543
No 14
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=3.7e-33 Score=274.52 Aligned_cols=257 Identities=18% Similarity=0.247 Sum_probs=196.7
Q ss_pred CeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECC--CCceecCCCCC-CCccceeeEEECCEEEEEec
Q 043540 160 RWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLL--TNTWSTGMTMN-TPRCLFGSASLGEIAILAGG 236 (437)
Q Consensus 160 ~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~--t~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG 236 (437)
.+..+|+||.++...+ .++++++|||+||.. .+.+++||+. +++|..++++| .+|..+++++++++|||+||
T Consensus 18 ~~~~l~~lP~~~~~~~----~~~~~~~iyv~gG~~-~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG 92 (376)
T PRK14131 18 NAEQLPDLPVPFKNGT----GAIDNNTVYVGLGSA-GTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGG 92 (376)
T ss_pred ecccCCCCCcCccCCe----EEEECCEEEEEeCCC-CCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcC
Confidence 4567899998876543 377899999999864 3568999986 48999999998 58999999999999999999
Q ss_pred cCC-C----CCCCceEEEEECCCCcEEecCC-CCcCCcCeeEEE-ECCEEEEEecccCC--CC-----------------
Q 043540 237 CDP-R----GKLLKSAELYNSITGTWMPISS-MHKARKMCSGVF-MDGKFYVIGGIGEG--SS----------------- 290 (437)
Q Consensus 237 ~~~-~----~~~~~~~~~yd~~t~~W~~~~~-~~~~r~~~~~~~-~~g~lyv~GG~~~~--~~----------------- 290 (437)
... . ...++++++||+.+++|+.+++ +|.++..+++++ .+++||++||.... ..
T Consensus 93 ~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~ 172 (376)
T PRK14131 93 IGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDK 172 (376)
T ss_pred CCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhh
Confidence 864 1 1346889999999999999985 466677777776 89999999997511 00
Q ss_pred -------------ccCCeEEEEECCCCceEecCCCCC-cccCCCCcccccccCCCCCEEEEECCEEEEEeCC------CC
Q 043540 291 -------------AMLTDVEMYDLETGKWTQITDMFP-ARIGSDGVSVISAAGEAPPLLAVVNNELYAADHE------KE 350 (437)
Q Consensus 291 -------------~~~~~v~~yd~~~~~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~------~~ 350 (437)
...+.+++||+.+++|+.++++|. ++.. +++++++++||++||. ..
T Consensus 173 i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~--------------~a~v~~~~~iYv~GG~~~~~~~~~ 238 (376)
T PRK14131 173 INDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAG--------------SAVVIKGNKLWLINGEIKPGLRTD 238 (376)
T ss_pred hHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCc--------------ceEEEECCEEEEEeeeECCCcCCh
Confidence 124689999999999999999986 5655 6788899999999983 22
Q ss_pred eEE--EEeCCCCcEEEccCCCCcccCC---CcccEEEEEeCCEEEEEcCCCCCCC------C-------ee-EEEeeecC
Q 043540 351 EVR--KFDKGRKLWRTLGRLPEQASSM---NGWGLAFRACGDQLIVIGGPRDSGG------G-------IV-ELNGWVPD 411 (437)
Q Consensus 351 ~v~--~yd~~~~~W~~v~~lp~~~~~~---~~~~~a~~~~~~~l~v~GG~~~~~~------~-------~~-~~~~~~~d 411 (437)
+++ .||+++++|..++.||.++... ...++.+++++++|||+||.+..+. + .. ...+..||
T Consensus 239 ~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd 318 (376)
T PRK14131 239 AVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYA 318 (376)
T ss_pred hheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEE
Confidence 333 5678999999999998865321 1123334678999999999864321 0 00 11244688
Q ss_pred CCCCCceecCccCCCceEeeeEEe
Q 043540 412 EGPPHWKLLARQPMCGFVFNCTVM 435 (437)
Q Consensus 412 ~~~~~W~~l~~~p~~~~~~~~~v~ 435 (437)
+.+++|+.++.||.++..++++++
T Consensus 319 ~~~~~W~~~~~lp~~r~~~~av~~ 342 (376)
T PRK14131 319 LVNGKWQKVGELPQGLAYGVSVSW 342 (376)
T ss_pred ecCCcccccCcCCCCccceEEEEe
Confidence 889999999999999988877654
No 15
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=4.7e-33 Score=268.79 Aligned_cols=241 Identities=17% Similarity=0.216 Sum_probs=189.6
Q ss_pred eeEEeCCEEEEEcCccCC-------------ceEEEEE-CC-CCceecCCCCCCCccceeeEEECCEEEEEeccCCCCCC
Q 043540 179 ESLAVGTELLVFGKEVHG-------------NAIYRYN-LL-TNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKL 243 (437)
Q Consensus 179 ~~~~~~~~lyv~GG~~~~-------------~~v~~yd-~~-t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~ 243 (437)
.++++++.|||+||.... +++++|+ +. +.+|..+++||.+|..+++++++++||++||.++.. .
T Consensus 8 ~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~-~ 86 (323)
T TIGR03548 8 YAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSE-R 86 (323)
T ss_pred eeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCCCC-C
Confidence 347789999999995432 3677775 33 237999999999999999999999999999987543 5
Q ss_pred CceEEEEECCCCcE----EecCCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCC-cccC
Q 043540 244 LKSAELYNSITGTW----MPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFP-ARIG 318 (437)
Q Consensus 244 ~~~~~~yd~~t~~W----~~~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~~~~ 318 (437)
++++++||+.+++| +.+++||.+|..+++++++++|||+||.. +....+++++||+.+++|++++++|. +|..
T Consensus 87 ~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~--~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~ 164 (323)
T TIGR03548 87 FSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNR--NGKPSNKSYLFNLETQEWFELPDFPGEPRVQ 164 (323)
T ss_pred ceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcC--CCccCceEEEEcCCCCCeeECCCCCCCCCCc
Confidence 78999999999998 78899999999999999999999999975 33457889999999999999998874 6666
Q ss_pred CCCcccccccCCCCCEEEEECCEEEEEeCCC----CeEEEEeCCCCcEEEccCCCCcccCCCcc-cEEEEEeCCEEEEEc
Q 043540 319 SDGVSVISAAGEAPPLLAVVNNELYAADHEK----EEVRKFDKGRKLWRTLGRLPEQASSMNGW-GLAFRACGDQLIVIG 393 (437)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~----~~v~~yd~~~~~W~~v~~lp~~~~~~~~~-~~a~~~~~~~l~v~G 393 (437)
+.+++++++||++||.. .++++||+++++|+.++.++......... .+++++.+++|||+|
T Consensus 165 --------------~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~G 230 (323)
T TIGR03548 165 --------------PVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIG 230 (323)
T ss_pred --------------ceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEEC
Confidence 67788999999999853 46899999999999998775321111111 234445679999999
Q ss_pred CCCCCCC-----------------------------CeeEEEeeecCCCCCCceecCccC-CCceEeeeEEee
Q 043540 394 GPRDSGG-----------------------------GIVELNGWVPDEGPPHWKLLARQP-MCGFVFNCTVMG 436 (437)
Q Consensus 394 G~~~~~~-----------------------------~~~~~~~~~~d~~~~~W~~l~~~p-~~~~~~~~~v~~ 436 (437)
|.+...- ......++.||+.+++|+.++++| ..|..+++++++
T Consensus 231 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~ 303 (323)
T TIGR03548 231 GFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTG 303 (323)
T ss_pred CcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEEC
Confidence 9863110 001235889999999999999888 477777776654
No 16
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=1.3e-33 Score=285.41 Aligned_cols=203 Identities=19% Similarity=0.314 Sum_probs=179.1
Q ss_pred cCcchHHhhhhcCccccEEEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEE
Q 043540 124 QSGELYRLRREMGIIEHWVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYN 203 (437)
Q Consensus 124 ~s~~~y~~~~~~~~~~~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd 203 (437)
.++.+|.+||..+.. ....++.|||.+++|..+++|+.++..++ +++++++||++||....+.+++||
T Consensus 270 ~~~~lyviGG~~~~~--------~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~----~v~~~~~iYviGG~~~~~sve~yd 337 (480)
T PHA02790 270 VGEVVYLIGGWMNNE--------IHNNAIAVNYISNNWIPIPPMNSPRLYAS----GVPANNKLYVVGGLPNPTSVERWF 337 (480)
T ss_pred ECCEEEEEcCCCCCC--------cCCeEEEEECCCCEEEECCCCCchhhcce----EEEECCEEEEECCcCCCCceEEEE
Confidence 566788888764322 34678999999999999999999887544 478999999999975557799999
Q ss_pred CCCCceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEECCEEEEEe
Q 043540 204 LLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFMDGKFYVIG 283 (437)
Q Consensus 204 ~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~g~lyv~G 283 (437)
|.+|+|..+++||.+|..+++++++++||++||.++. .+.+++|||.+++|+.+++|+.+|..+++++++|+|||+|
T Consensus 338 p~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G 414 (480)
T PHA02790 338 HGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG 414 (480)
T ss_pred CCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC
Confidence 9999999999999999999999999999999998643 3679999999999999999999999999999999999999
Q ss_pred cccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCC-----CCeEEEEeCC
Q 043540 284 GIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHE-----KEEVRKFDKG 358 (437)
Q Consensus 284 G~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~-----~~~v~~yd~~ 358 (437)
|. +++||+++++|+.+++|+.+|.. +++++++|+||++||. .+.+++||++
T Consensus 415 G~----------~e~ydp~~~~W~~~~~m~~~r~~--------------~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 415 RN----------AEFYCESSNTWTLIDDPIYPRDN--------------PELIIVDNKLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred Cc----------eEEecCCCCcEeEcCCCCCCccc--------------cEEEEECCEEEEECCcCCCcccceEEEEECC
Confidence 84 68899999999999999999988 7899999999999984 2579999999
Q ss_pred CCcEEEc
Q 043540 359 RKLWRTL 365 (437)
Q Consensus 359 ~~~W~~v 365 (437)
+++|+..
T Consensus 471 ~~~W~~~ 477 (480)
T PHA02790 471 TYSWNIW 477 (480)
T ss_pred CCeEEec
Confidence 9999764
No 17
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=6.6e-33 Score=272.71 Aligned_cols=268 Identities=18% Similarity=0.234 Sum_probs=197.9
Q ss_pred hhcCcchHHhhhhcCccccEEEEEecCceEEEeccC--CCCeeeCCCCCC-ccccccCCceeEEeCCEEEEEcCccC---
Q 043540 122 LIQSGELYRLRREMGIIEHWVYFSCKLKEWEAFDPI--HHRWMHLPPMNA-SDCFMCADKESLAVGTELLVFGKEVH--- 195 (437)
Q Consensus 122 li~s~~~y~~~~~~~~~~~~l~~~~~~~~~~~yDp~--~~~W~~l~~~p~-~~~~~~~~~~~~~~~~~lyv~GG~~~--- 195 (437)
.+.++.+|+++|... ..++.||+. +++|..++++|. ++.. +.++++++.|||+||...
T Consensus 35 ~~~~~~iyv~gG~~~------------~~~~~~d~~~~~~~W~~l~~~p~~~r~~----~~~v~~~~~IYV~GG~~~~~~ 98 (376)
T PRK14131 35 AIDNNTVYVGLGSAG------------TSWYKLDLNAPSKGWTKIAAFPGGPREQ----AVAAFIDGKLYVFGGIGKTNS 98 (376)
T ss_pred EEECCEEEEEeCCCC------------CeEEEEECCCCCCCeEECCcCCCCCccc----ceEEEECCEEEEEcCCCCCCC
Confidence 455788998877532 235677775 579999999985 5543 345889999999999532
Q ss_pred ------CceEEEEECCCCceecCCC-CCCCccceeeEE-ECCEEEEEeccCCCC--------------------------
Q 043540 196 ------GNAIYRYNLLTNTWSTGMT-MNTPRCLFGSAS-LGEIAILAGGCDPRG-------------------------- 241 (437)
Q Consensus 196 ------~~~v~~yd~~t~~W~~~~~-~~~~r~~~~~~~-~~~~iyv~GG~~~~~-------------------------- 241 (437)
.+++++||+.+++|+.+++ +|.++..|++++ .+++||++||.+...
T Consensus 99 ~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~ 178 (376)
T PRK14131 99 EGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYF 178 (376)
T ss_pred CCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHh
Confidence 3689999999999999985 466777777776 899999999975310
Q ss_pred -------CCCceEEEEECCCCcEEecCCCCc-CCcCeeEEEECCEEEEEecccCCCCccCCeE--EEEECCCCceEecCC
Q 043540 242 -------KLLKSAELYNSITGTWMPISSMHK-ARKMCSGVFMDGKFYVIGGIGEGSSAMLTDV--EMYDLETGKWTQITD 311 (437)
Q Consensus 242 -------~~~~~~~~yd~~t~~W~~~~~~~~-~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v--~~yd~~~~~W~~~~~ 311 (437)
...+++++||+.+++|+.+++||. +|..++++.++++|||+||... .......+ ..||+++++|+.+++
T Consensus 179 ~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~-~~~~~~~~~~~~~~~~~~~W~~~~~ 257 (376)
T PRK14131 179 DKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIK-PGLRTDAVKQGKFTGNNLKWQKLPD 257 (376)
T ss_pred cCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeEC-CCcCChhheEEEecCCCcceeecCC
Confidence 124789999999999999999996 6778888899999999999752 12222333 356889999999999
Q ss_pred CCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCC----------------------CeEEEEeCCCCcEEEccCCC
Q 043540 312 MFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEK----------------------EEVRKFDKGRKLWRTLGRLP 369 (437)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~----------------------~~v~~yd~~~~~W~~v~~lp 369 (437)
||.+|.++. + .+...+.+++++++||++||.. ..+++||+++++|+.++.||
T Consensus 258 ~p~~~~~~~-----~-~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp 331 (376)
T PRK14131 258 LPPAPGGSS-----Q-EGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELP 331 (376)
T ss_pred CCCCCcCCc-----C-CccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCC
Confidence 988775310 0 0001122567899999999842 13678999999999999999
Q ss_pred CcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCcee
Q 043540 370 EQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKL 419 (437)
Q Consensus 370 ~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~ 419 (437)
.++. .+++++++++|||+||....+. ....++.|++..+.++.
T Consensus 332 ~~r~-----~~~av~~~~~iyv~GG~~~~~~--~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 332 QGLA-----YGVSVSWNNGVLLIGGETAGGK--AVSDVTLLSWDGKKLTV 374 (376)
T ss_pred CCcc-----ceEEEEeCCEEEEEcCCCCCCc--EeeeEEEEEEcCCEEEE
Confidence 8875 3456789999999999764433 34456666655666654
No 18
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=9.4e-33 Score=284.69 Aligned_cols=229 Identities=21% Similarity=0.347 Sum_probs=195.8
Q ss_pred HHHhhcCcchHHhhhhcCccccEEEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCcc---C
Q 043540 119 FRSLIQSGELYRLRREMGIIEHWVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEV---H 195 (437)
Q Consensus 119 w~sli~s~~~y~~~~~~~~~~~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~---~ 195 (437)
+.+++.++.+|++||...... ..++++.||+.+++|..+++||.++..++ +++++++||++||.. .
T Consensus 288 ~~~~~~~~~lyv~GG~~~~~~-------~~~~v~~yd~~~~~W~~~~~~~~~R~~~~----~~~~~~~lyv~GG~~~~~~ 356 (534)
T PHA03098 288 FGSVVLNNVIYFIGGMNKNNL-------SVNSVVSYDTKTKSWNKVPELIYPRKNPG----VTVFNNRIYVIGGIYNSIS 356 (534)
T ss_pred ceEEEECCEEEEECCCcCCCC-------eeccEEEEeCCCCeeeECCCCCcccccce----EEEECCEEEEEeCCCCCEe
Confidence 345567788999998764331 23578999999999999999998887544 488999999999954 3
Q ss_pred CceEEEEECCCCceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE
Q 043540 196 GNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM 275 (437)
Q Consensus 196 ~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 275 (437)
.+++++||+.+++|+.+++||.+|..+++++++++||++||.......++++++||+.+++|+.+++||.+|..++++++
T Consensus 357 ~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 436 (534)
T PHA03098 357 LNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYH 436 (534)
T ss_pred cceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEE
Confidence 56899999999999999999999999999999999999999765555678999999999999999999999999999999
Q ss_pred CCEEEEEecccCCC-CccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCC-----C
Q 043540 276 DGKFYVIGGIGEGS-SAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHE-----K 349 (437)
Q Consensus 276 ~g~lyv~GG~~~~~-~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~-----~ 349 (437)
+++||++||..... ....+.+++||+++++|+.+++++.+|.. +++++++++||++||. .
T Consensus 437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~--------------~~~~~~~~~iyv~GG~~~~~~~ 502 (534)
T PHA03098 437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRIN--------------ASLCIFNNKIYVVGGDKYEYYI 502 (534)
T ss_pred CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCccccc--------------ceEEEECCEEEEEcCCcCCccc
Confidence 99999999976211 12356799999999999999999988887 6778899999999985 3
Q ss_pred CeEEEEeCCCCcEEEccCCCCcc
Q 043540 350 EEVRKFDKGRKLWRTLGRLPEQA 372 (437)
Q Consensus 350 ~~v~~yd~~~~~W~~v~~lp~~~ 372 (437)
+.+++||+.+++|..++.+|...
T Consensus 503 ~~v~~yd~~~~~W~~~~~~p~~~ 525 (534)
T PHA03098 503 NEIEVYDDKTNTWTLFCKFPKVI 525 (534)
T ss_pred ceeEEEeCCCCEEEecCCCcccc
Confidence 68999999999999999877754
No 19
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.97 E-value=7.5e-30 Score=223.64 Aligned_cols=240 Identities=16% Similarity=0.222 Sum_probs=196.4
Q ss_pred CceeEEeCCEEEEEcCcc--------CCceEEEEECCCCceecCCC-------------CCCCccceeeEEECCEEEEEe
Q 043540 177 DKESLAVGTELLVFGKEV--------HGNAIYRYNLLTNTWSTGMT-------------MNTPRCLFGSASLGEIAILAG 235 (437)
Q Consensus 177 ~~~~~~~~~~lyv~GG~~--------~~~~v~~yd~~t~~W~~~~~-------------~~~~r~~~~~~~~~~~iyv~G 235 (437)
.++++++|..||-|||.. ..-++.++|..+-+|+++++ .|..|++|+.+.+++++||.|
T Consensus 16 NHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWG 95 (392)
T KOG4693|consen 16 NHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWG 95 (392)
T ss_pred cceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEc
Confidence 345599999999999832 22478999999999999875 345599999999999999999
Q ss_pred ccCCCCCCCceEEEEECCCCcEEecC---CCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCC-
Q 043540 236 GCDPRGKLLKSAELYNSITGTWMPIS---SMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITD- 311 (437)
Q Consensus 236 G~~~~~~~~~~~~~yd~~t~~W~~~~---~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~- 311 (437)
|.++.....+.++.||+++++|.+.. -.|.+|.+|++++.++.+||+||+........+++.++|..|.+|+.+..
T Consensus 96 GRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tk 175 (392)
T KOG4693|consen 96 GRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTK 175 (392)
T ss_pred CccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhcc
Confidence 99887667899999999999998763 57899999999999999999999975555677889999999999999963
Q ss_pred --CCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCC--------------CeEEEEeCCCCcEEEccC---CCCcc
Q 043540 312 --MFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEK--------------EEVRKFDKGRKLWRTLGR---LPEQA 372 (437)
Q Consensus 312 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~--------------~~v~~yd~~~~~W~~v~~---lp~~~ 372 (437)
.|.=|.. |++.++++.+|++||.. +.|..+|.+|+.|..-.. .|..+
T Consensus 176 g~PprwRDF--------------H~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GR 241 (392)
T KOG4693|consen 176 GDPPRWRDF--------------HTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGR 241 (392)
T ss_pred CCCchhhhh--------------hhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcc
Confidence 2333444 67888999999999842 479999999999998753 45555
Q ss_pred cCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCceecC---ccCCCceEeeeEEee
Q 043540 373 SSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKLLA---RQPMCGFVFNCTVMG 436 (437)
Q Consensus 373 ~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~---~~p~~~~~~~~~v~~ 436 (437)
++ ++..+++++||+|||++.- -..-..+.|.|||.+..|+.|. .-|.+|..++|+|+|
T Consensus 242 RS-----HS~fvYng~~Y~FGGYng~-ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g 302 (392)
T KOG4693|consen 242 RS-----HSTFVYNGKMYMFGGYNGT-LNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSG 302 (392)
T ss_pred cc-----cceEEEcceEEEecccchh-hhhhhcceeecccccchheeeeccCCCCCcccceeEEEEC
Confidence 53 4556899999999998621 1223457899999999999994 568899999999987
No 20
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.97 E-value=3.4e-30 Score=225.83 Aligned_cols=257 Identities=17% Similarity=0.306 Sum_probs=202.7
Q ss_pred HHHhhcCcchHHhhhhcCccccEEEEEecCceEEEeccCCCCeeeCCCC--------CCcc-ccccCCceeEEeCCEEEE
Q 043540 119 FRSLIQSGELYRLRREMGIIEHWVYFSCKLKEWEAFDPIHHRWMHLPPM--------NASD-CFMCADKESLAVGTELLV 189 (437)
Q Consensus 119 w~sli~s~~~y~~~~~~~~~~~~l~~~~~~~~~~~yDp~~~~W~~l~~~--------p~~~-~~~~~~~~~~~~~~~lyv 189 (437)
+.++.....+|.+||.-.... |-...-.+++++|..+-+|+++|+- +.|. .+..-.++++.+.+++|+
T Consensus 17 HAavaVG~riYSFGGYCsGed---y~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yv 93 (392)
T KOG4693|consen 17 HAAVAVGSRIYSFGGYCSGED---YDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYV 93 (392)
T ss_pred ceeeeecceEEecCCcccccc---cccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEE
Confidence 344566788999998754321 2222457899999999999999872 1111 122235778999999999
Q ss_pred EcCcc----CCceEEEEECCCCceecCC---CCCCCccceeeEEECCEEEEEeccCCC-CCCCceEEEEECCCCcEEecC
Q 043540 190 FGKEV----HGNAIYRYNLLTNTWSTGM---TMNTPRCLFGSASLGEIAILAGGCDPR-GKLLKSAELYNSITGTWMPIS 261 (437)
Q Consensus 190 ~GG~~----~~~~v~~yd~~t~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~yd~~t~~W~~~~ 261 (437)
.||.+ ..+.++.|||.|+.|++.. -+|.+|.+|+++++++.+|++||+.+. ..+.+++.++|..|-+|+.+.
T Consensus 94 WGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~ 173 (392)
T KOG4693|consen 94 WGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMH 173 (392)
T ss_pred EcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehh
Confidence 99954 3478999999999999753 588899999999999999999998654 346789999999999999885
Q ss_pred ---CCCcCCcCeeEEEECCEEEEEecccC-------CCCccCCeEEEEECCCCceEecCC---CCCcccCCCCccccccc
Q 043540 262 ---SMHKARKMCSGVFMDGKFYVIGGIGE-------GSSAMLTDVEMYDLETGKWTQITD---MFPARIGSDGVSVISAA 328 (437)
Q Consensus 262 ---~~~~~r~~~~~~~~~g~lyv~GG~~~-------~~~~~~~~v~~yd~~~~~W~~~~~---~~~~~~~~~~~~~~~~~ 328 (437)
..|.-|..|+++++++.+||+||... .+..+.+.+..+|+.|+.|+..++ .|.+|..
T Consensus 174 Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRS---------- 243 (392)
T KOG4693|consen 174 TKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRS---------- 243 (392)
T ss_pred ccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccc----------
Confidence 45566789999999999999999762 223456789999999999998863 5677777
Q ss_pred CCCCCEEEEECCEEEEEeCC-------CCeEEEEeCCCCcEEEcc---CCCCcccCCCcccEEEEEeCCEEEEEcCCCC
Q 043540 329 GEAPPLLAVVNNELYAADHE-------KEEVRKFDKGRKLWRTLG---RLPEQASSMNGWGLAFRACGDQLIVIGGPRD 397 (437)
Q Consensus 329 ~~~~~~~~~~~~~ly~~gg~-------~~~v~~yd~~~~~W~~v~---~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~ 397 (437)
|+..++|++||++||. .++++.|||.+..|..|. .-|.+++ ..++++.++++|+|||...
T Consensus 244 ----HS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRR-----RqC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 244 ----HSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARR-----RQCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred ----cceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCccc-----ceeEEEECCEEEEecCCCC
Confidence 7899999999999973 578999999999999985 4455554 2456788999999999753
No 21
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.93 E-value=2.1e-24 Score=217.39 Aligned_cols=241 Identities=25% Similarity=0.392 Sum_probs=195.5
Q ss_pred CCCccccccCCceeEEeCCEEEEEcCccC---Cc--eEEEEECCCCceecCC---CCCCCccceeeEEECCEEEEEeccC
Q 043540 167 MNASDCFMCADKESLAVGTELLVFGKEVH---GN--AIYRYNLLTNTWSTGM---TMNTPRCLFGSASLGEIAILAGGCD 238 (437)
Q Consensus 167 ~p~~~~~~~~~~~~~~~~~~lyv~GG~~~---~~--~v~~yd~~t~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~ 238 (437)
.|.+|..|. ++.+++++|||||... .. ++|++|..+..|.... ..|.+|..|.++.++++||++||.+
T Consensus 57 ~p~~R~~hs----~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~ 132 (482)
T KOG0379|consen 57 GPIPRAGHS----AVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTD 132 (482)
T ss_pred Ccchhhccc----eeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEcccc
Confidence 455555544 4777999999998431 12 6999999999998764 4678999999999999999999998
Q ss_pred CCCCCCceEEEEECCCCcEEecC---CCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecC---CC
Q 043540 239 PRGKLLKSAELYNSITGTWMPIS---SMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQIT---DM 312 (437)
Q Consensus 239 ~~~~~~~~~~~yd~~t~~W~~~~---~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~---~~ 312 (437)
.....+++++.||+.|++|+.+. .+|.+|..|++++++.+|||+||.+ ......+++++||+++.+|.++. ..
T Consensus 133 ~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~-~~~~~~ndl~i~d~~~~~W~~~~~~g~~ 211 (482)
T KOG0379|consen 133 KKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIG-GTGDSLNDLHIYDLETSTWSELDTQGEA 211 (482)
T ss_pred CCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCcc-CcccceeeeeeeccccccceecccCCCC
Confidence 65556899999999999999874 5688999999999999999999998 33348899999999999999986 46
Q ss_pred CCcccCCCCcccccccCCCCCEEEEECCEEEEEeCC------CCeEEEEeCCCCcEEEcc---CCCCcccCCCcccEEEE
Q 043540 313 FPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHE------KEEVRKFDKGRKLWRTLG---RLPEQASSMNGWGLAFR 383 (437)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~------~~~v~~yd~~~~~W~~v~---~lp~~~~~~~~~~~a~~ 383 (437)
|.+|.+ |++++++++++++||. .++++.+|..+.+|+.+. .+|.++. ++..+
T Consensus 212 P~pR~g--------------H~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~-----~h~~~ 272 (482)
T KOG0379|consen 212 PSPRYG--------------HAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRS-----GHSLT 272 (482)
T ss_pred CCCCCC--------------ceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcc-----eeeeE
Confidence 778888 8899999999999863 468999999999999764 4555554 45566
Q ss_pred EeCCEEEEEcCCCCCCCCe-eEEEeeecCCCCCCceecCc----cCCCceEeeeE
Q 043540 384 ACGDQLIVIGGPRDSGGGI-VELNGWVPDEGPPHWKLLAR----QPMCGFVFNCT 433 (437)
Q Consensus 384 ~~~~~l~v~GG~~~~~~~~-~~~~~~~~d~~~~~W~~l~~----~p~~~~~~~~~ 433 (437)
..++.++++||.... .. ...+.|.||..+..|.++.. .|.+++.|..+
T Consensus 273 ~~~~~~~l~gG~~~~--~~~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~ 325 (482)
T KOG0379|consen 273 VSGDHLLLFGGGTDP--KQEPLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAE 325 (482)
T ss_pred EECCEEEEEcCCccc--ccccccccccccccccceeeeeccccccccccccccce
Confidence 889999999998743 22 35568889999999999843 35567766654
No 22
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.91 E-value=5e-23 Score=207.40 Aligned_cols=272 Identities=21% Similarity=0.269 Sum_probs=204.5
Q ss_pred hcCcchHHhhhhcCccccEEEEEecCceEEEeccCCCCeeeCCC---CCCccccccCCceeEEeCCEEEEEcCcc----C
Q 043540 123 IQSGELYRLRREMGIIEHWVYFSCKLKEWEAFDPIHHRWMHLPP---MNASDCFMCADKESLAVGTELLVFGKEV----H 195 (437)
Q Consensus 123 i~s~~~y~~~~~~~~~~~~l~~~~~~~~~~~yDp~~~~W~~l~~---~p~~~~~~~~~~~~~~~~~~lyv~GG~~----~ 195 (437)
+.++++|++||....... ...+++.+|..+..|..... .|.++. .+.+++++++||+|||.. .
T Consensus 68 ~~~~~~~vfGG~~~~~~~------~~~dl~~~d~~~~~w~~~~~~g~~p~~r~----g~~~~~~~~~l~lfGG~~~~~~~ 137 (482)
T KOG0379|consen 68 LIGNKLYVFGGYGSGDRL------TDLDLYVLDLESQLWTKPAATGDEPSPRY----GHSLSAVGDKLYLFGGTDKKYRN 137 (482)
T ss_pred EECCEEEEECCCCCCCcc------ccceeEEeecCCcccccccccCCCCCccc----ceeEEEECCeEEEEccccCCCCC
Confidence 448899999987654311 11268999999999986543 233333 455689999999999964 2
Q ss_pred CceEEEEECCCCceecCC---CCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecC---CCCcCCcC
Q 043540 196 GNAIYRYNLLTNTWSTGM---TMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPIS---SMHKARKM 269 (437)
Q Consensus 196 ~~~v~~yd~~t~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~---~~~~~r~~ 269 (437)
.++++.||+.|++|+.+. .+|.+|.+|++++++++|||+||++.....++++++||+++.+|.++. ..|.+|..
T Consensus 138 ~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~g 217 (482)
T KOG0379|consen 138 LNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYG 217 (482)
T ss_pred hhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCC
Confidence 358999999999999774 468899999999999999999999887768999999999999999884 56789999
Q ss_pred eeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecC---CCCCcccCCCCcccccccCCCCCEEEEECCEEEEEe
Q 043540 270 CSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQIT---DMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAAD 346 (437)
Q Consensus 270 ~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~g 346 (437)
|++++++++++++||.+ .+...+++++.+|+.+.+|..+. .+|.+|.. |..++.+.+++++|
T Consensus 218 H~~~~~~~~~~v~gG~~-~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~--------------h~~~~~~~~~~l~g 282 (482)
T KOG0379|consen 218 HAMVVVGNKLLVFGGGD-DGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSG--------------HSLTVSGDHLLLFG 282 (482)
T ss_pred ceEEEECCeEEEEeccc-cCCceecceEeeecccceeeeccccCCCCCCcce--------------eeeEEECCEEEEEc
Confidence 99999999999999987 67789999999999999999775 47888888 67779999999998
Q ss_pred CC-------CCeEEEEeCCCCcEEEccCCC-CcccCCCcccEEEEEeC----CEEEEEcCCCCCCCCeeEEEe--eecCC
Q 043540 347 HE-------KEEVRKFDKGRKLWRTLGRLP-EQASSMNGWGLAFRACG----DQLIVIGGPRDSGGGIVELNG--WVPDE 412 (437)
Q Consensus 347 g~-------~~~v~~yd~~~~~W~~v~~lp-~~~~~~~~~~~a~~~~~----~~l~v~GG~~~~~~~~~~~~~--~~~d~ 412 (437)
|. ..+++.||.+++.|.++.... ..... . ..++++... ..+.++||....+....++.. +....
T Consensus 283 G~~~~~~~~l~~~~~l~~~~~~w~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (482)
T KOG0379|consen 283 GGTDPKQEPLGDLYGLDLETLVWSKVESVGVVRPSP-R-LGHAAELIDELGKDGLGILGGNQILGERLADVFSLQIKLLS 360 (482)
T ss_pred CCcccccccccccccccccccceeeeeccccccccc-c-ccccceeeccCCccceeeecCccccccchhhcccccccccc
Confidence 74 246899999999999997665 22111 1 122222222 234555664433333333322 23455
Q ss_pred CCCCceecC
Q 043540 413 GPPHWKLLA 421 (437)
Q Consensus 413 ~~~~W~~l~ 421 (437)
..+.|...+
T Consensus 361 ~~~~~~~~~ 369 (482)
T KOG0379|consen 361 RKNEVQEPG 369 (482)
T ss_pred cCCcccccc
Confidence 666776664
No 23
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.90 E-value=1.2e-22 Score=188.35 Aligned_cols=222 Identities=21% Similarity=0.286 Sum_probs=175.2
Q ss_pred CCEEEEEcCcc-------CCceEEEEECCCCceecC--CCCCCCccceeeEEEC-CEEEEEeccCCC-----CCCCceEE
Q 043540 184 GTELLVFGKEV-------HGNAIYRYNLLTNTWSTG--MTMNTPRCLFGSASLG-EIAILAGGCDPR-----GKLLKSAE 248 (437)
Q Consensus 184 ~~~lyv~GG~~-------~~~~v~~yd~~t~~W~~~--~~~~~~r~~~~~~~~~-~~iyv~GG~~~~-----~~~~~~~~ 248 (437)
.+.|++|||+. .-+++|.||..+++|+.+ |..|.||+.|.++++. +.+|++||.-.. -....++|
T Consensus 78 keELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W 157 (521)
T KOG1230|consen 78 KEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLW 157 (521)
T ss_pred cceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhhee
Confidence 45889999853 237999999999999987 5678899999988885 899999994211 11357899
Q ss_pred EEECCCCcEEecC--CCCcCCcCeeEEEECCEEEEEecccCCC--CccCCeEEEEECCCCceEecCC---CCCcccCCCC
Q 043540 249 LYNSITGTWMPIS--SMHKARKMCSGVFMDGKFYVIGGIGEGS--SAMLTDVEMYDLETGKWTQITD---MFPARIGSDG 321 (437)
Q Consensus 249 ~yd~~t~~W~~~~--~~~~~r~~~~~~~~~g~lyv~GG~~~~~--~~~~~~v~~yd~~~~~W~~~~~---~~~~~~~~~~ 321 (437)
+||..+++|+.+. .-|.+|++|.+++...+|+++||+...+ ..+++++++||+.+=+|+++.+ -|.+|++
T Consensus 158 ~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSG--- 234 (521)
T KOG1230|consen 158 LFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSG--- 234 (521)
T ss_pred eeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCc---
Confidence 9999999999884 5689999999999999999999987332 3578999999999999999974 4677887
Q ss_pred cccccccCCCCCEEEEE-CCEEEEEeCC--------------CCeEEEEeCCC-----CcEEEccCCCCcccCCCcccEE
Q 043540 322 VSVISAAGEAPPLLAVV-NNELYAADHE--------------KEEVRKFDKGR-----KLWRTLGRLPEQASSMNGWGLA 381 (437)
Q Consensus 322 ~~~~~~~~~~~~~~~~~-~~~ly~~gg~--------------~~~v~~yd~~~-----~~W~~v~~lp~~~~~~~~~~~a 381 (437)
+.+.+. +|.||+.||. ..+++.+++.+ -.|..+.+....+....||+++
T Consensus 235 -----------cq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~ 303 (521)
T KOG1230|consen 235 -----------CQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVA 303 (521)
T ss_pred -----------ceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEE
Confidence 666776 9999999972 34789999988 5688987666555555566655
Q ss_pred EEEeCCEEEEEcCCCCCC------CCeeEEEeeecCCCCCCceec
Q 043540 382 FRACGDQLIVIGGPRDSG------GGIVELNGWVPDEGPPHWKLL 420 (437)
Q Consensus 382 ~~~~~~~l~v~GG~~~~~------~~~~~~~~~~~d~~~~~W~~l 420 (437)
+ +-+++-+.|||..+.. .+....+.|-||...++|...
T Consensus 304 v-a~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 304 V-AKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred E-ecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHh
Confidence 3 5678999999986522 133445678889999999876
No 24
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.89 E-value=1.7e-22 Score=187.36 Aligned_cols=216 Identities=20% Similarity=0.268 Sum_probs=168.0
Q ss_pred chHHhhhhcCc-cccEEEEEecCceEEEeccCCCCeeeC--CCCCCccccccCCceeEEe-CCEEEEEcCccC-------
Q 043540 127 ELYRLRREMGI-IEHWVYFSCKLKEWEAFDPIHHRWMHL--PPMNASDCFMCADKESLAV-GTELLVFGKEVH------- 195 (437)
Q Consensus 127 ~~y~~~~~~~~-~~~~l~~~~~~~~~~~yDp~~~~W~~l--~~~p~~~~~~~~~~~~~~~-~~~lyv~GG~~~------- 195 (437)
+++.+||..-. +...+| ++.+.||...+.|..+ |.-|.||+.|. +|++ .+.+|+|||+..
T Consensus 80 ELilfGGEf~ngqkT~vY-----ndLy~Yn~k~~eWkk~~spn~P~pRsshq----~va~~s~~l~~fGGEfaSPnq~qF 150 (521)
T KOG1230|consen 80 ELILFGGEFYNGQKTHVY-----NDLYSYNTKKNEWKKVVSPNAPPPRSSHQ----AVAVPSNILWLFGGEFASPNQEQF 150 (521)
T ss_pred eeEEecceeecceeEEEe-----eeeeEEeccccceeEeccCCCcCCCccce----eEEeccCeEEEeccccCCcchhhh
Confidence 46666665332 223333 7889999999999875 45566666543 2444 489999999642
Q ss_pred --CceEEEEECCCCceecCC--CCCCCccceeeEEECCEEEEEeccCCC---CCCCceEEEEECCCCcEEecCC---CCc
Q 043540 196 --GNAIYRYNLLTNTWSTGM--TMNTPRCLFGSASLGEIAILAGGCDPR---GKLLKSAELYNSITGTWMPISS---MHK 265 (437)
Q Consensus 196 --~~~v~~yd~~t~~W~~~~--~~~~~r~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~~yd~~t~~W~~~~~---~~~ 265 (437)
-.++|.||..|++|.++. .-|.||++|.+++...+|++|||+... ..+.+++++||+.|-+|+++.+ -|.
T Consensus 151 ~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~Pt 230 (521)
T KOG1230|consen 151 HHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPT 230 (521)
T ss_pred hhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCC
Confidence 258999999999999874 578999999999999999999997542 3478999999999999999853 478
Q ss_pred CCcCeeEEEE-CCEEEEEeccc-------CCCCccCCeEEEEECCC-----CceEecCC---CCCcccCCCCcccccccC
Q 043540 266 ARKMCSGVFM-DGKFYVIGGIG-------EGSSAMLTDVEMYDLET-----GKWTQITD---MFPARIGSDGVSVISAAG 329 (437)
Q Consensus 266 ~r~~~~~~~~-~g~lyv~GG~~-------~~~~~~~~~v~~yd~~~-----~~W~~~~~---~~~~~~~~~~~~~~~~~~ 329 (437)
+|++|...+. +|.|||.||+. ...+...++++..++.. -.|+.+.+ -|.+|++
T Consensus 231 pRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsg----------- 299 (521)
T KOG1230|consen 231 PRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSG----------- 299 (521)
T ss_pred CCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCc-----------
Confidence 9999998888 99999999986 12345667899999998 56888864 4677777
Q ss_pred CCCCEEEEE-CCEEEEEeCC--------------CCeEEEEeCCCCcEEEc
Q 043540 330 EAPPLLAVV-NNELYAADHE--------------KEEVRKFDKGRKLWRTL 365 (437)
Q Consensus 330 ~~~~~~~~~-~~~ly~~gg~--------------~~~v~~yd~~~~~W~~v 365 (437)
.++++. +++-+.+||. .++++.||...++|...
T Consensus 300 ---fsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 300 ---FSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred ---eeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHh
Confidence 455554 6699999872 46899999999999754
No 25
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.88 E-value=9.6e-22 Score=186.51 Aligned_cols=244 Identities=19% Similarity=0.282 Sum_probs=182.3
Q ss_pred HHHhhcCcchHHhhhhcCccccEEEEEecCceEEEeccCCCCeeeCC---CCCCccccccCCceeEEeCCEEEEEcCc--
Q 043540 119 FRSLIQSGELYRLRREMGIIEHWVYFSCKLKEWEAFDPIHHRWMHLP---PMNASDCFMCADKESLAVGTELLVFGKE-- 193 (437)
Q Consensus 119 w~sli~s~~~y~~~~~~~~~~~~l~~~~~~~~~~~yDp~~~~W~~l~---~~p~~~~~~~~~~~~~~~~~~lyv~GG~-- 193 (437)
||++....-+.++||-+.. ...+.+.||..++.|..-+ .+|.+ |+.+..+..|++||+|||-
T Consensus 36 HRAVaikELiviFGGGNEG---------iiDELHvYNTatnqWf~PavrGDiPpg----cAA~GfvcdGtrilvFGGMvE 102 (830)
T KOG4152|consen 36 HRAVAIKELIVIFGGGNEG---------IIDELHVYNTATNQWFAPAVRGDIPPG----CAAFGFVCDGTRILVFGGMVE 102 (830)
T ss_pred chheeeeeeEEEecCCccc---------chhhhhhhccccceeecchhcCCCCCc----hhhcceEecCceEEEEccEee
Confidence 3555555555566654321 2356899999999997422 23333 3334557889999999993
Q ss_pred --cCCceEEEEECCCCceecCC-------CCCCCccceeeEEECCEEEEEeccCCC--------CCCCceEEEEECCCCc
Q 043540 194 --VHGNAIYRYNLLTNTWSTGM-------TMNTPRCLFGSASLGEIAILAGGCDPR--------GKLLKSAELYNSITGT 256 (437)
Q Consensus 194 --~~~~~v~~yd~~t~~W~~~~-------~~~~~r~~~~~~~~~~~iyv~GG~~~~--------~~~~~~~~~yd~~t~~ 256 (437)
..++++|......=.|+++. ++|.||-+|+...++++.|+|||.... -++++++++.++.-+.
T Consensus 103 YGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gs 182 (830)
T KOG4152|consen 103 YGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGS 182 (830)
T ss_pred eccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCC
Confidence 45677765555445567763 367899999999999999999995321 2478999999887554
Q ss_pred ----EEec---CCCCcCCcCeeEEEE------CCEEEEEecccCCCCccCCeEEEEECCCCceEecC---CCCCcccCCC
Q 043540 257 ----WMPI---SSMHKARKMCSGVFM------DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQIT---DMFPARIGSD 320 (437)
Q Consensus 257 ----W~~~---~~~~~~r~~~~~~~~------~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~~~~~~ 320 (437)
|... ..+|.+|..|+++++ ..|+||+||++ +..+.+++..|+++.+|++.. ..|.+|+-
T Consensus 183 gvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~---G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSL-- 257 (830)
T KOG4152|consen 183 GVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMS---GCRLGDLWTLDLDTLTWNKPSLSGVAPLPRSL-- 257 (830)
T ss_pred ceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccc---cccccceeEEecceeecccccccCCCCCCccc--
Confidence 8765 467899999999988 34799999986 677889999999999999875 35666766
Q ss_pred CcccccccCCCCCEEEEECCEEEEEeC-------------------CCCeEEEEeCCCCcEEEcc-------CCCCcccC
Q 043540 321 GVSVISAAGEAPPLLAVVNNELYAADH-------------------EKEEVRKFDKGRKLWRTLG-------RLPEQASS 374 (437)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~ly~~gg-------------------~~~~v~~yd~~~~~W~~v~-------~lp~~~~~ 374 (437)
|++.+++|++|++|| ....+-.+++.+..|..+- ..|.++
T Consensus 258 ------------Hsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~R-- 323 (830)
T KOG4152|consen 258 ------------HSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRAR-- 323 (830)
T ss_pred ------------ccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeecccccccccccc--
Confidence 778999999999997 1346788899999999873 234333
Q ss_pred CCcccEEEEEeCCEEEEEcCCCC
Q 043540 375 MNGWGLAFRACGDQLIVIGGPRD 397 (437)
Q Consensus 375 ~~~~~~a~~~~~~~l~v~GG~~~ 397 (437)
.|++.++++++||+..|++.
T Consensus 324 ---AGHCAvAigtRlYiWSGRDG 343 (830)
T KOG4152|consen 324 ---AGHCAVAIGTRLYIWSGRDG 343 (830)
T ss_pred ---ccceeEEeccEEEEEeccch
Confidence 37888999999999999873
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.86 E-value=8.1e-21 Score=180.28 Aligned_cols=253 Identities=18% Similarity=0.249 Sum_probs=186.5
Q ss_pred CCeeeCC----CCCCccccccCCceeEEeCCEEEEEcCcc--CCceEEEEECCCCceecC---CCCCCCccceeeEEECC
Q 043540 159 HRWMHLP----PMNASDCFMCADKESLAVGTELLVFGKEV--HGNAIYRYNLLTNTWSTG---MTMNTPRCLFGSASLGE 229 (437)
Q Consensus 159 ~~W~~l~----~~p~~~~~~~~~~~~~~~~~~lyv~GG~~--~~~~v~~yd~~t~~W~~~---~~~~~~r~~~~~~~~~~ 229 (437)
-+|.++. +.|.+|+.|. .+++...|.+|||.+ ..+.+.+||..||+|..- .++|.+-..|+.+..+.
T Consensus 17 ~rWrrV~~~tGPvPrpRHGHR----AVaikELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGt 92 (830)
T KOG4152|consen 17 VRWRRVQQSTGPVPRPRHGHR----AVAIKELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGT 92 (830)
T ss_pred cceEEEecccCCCCCccccch----heeeeeeEEEecCCcccchhhhhhhccccceeecchhcCCCCCchhhcceEecCc
Confidence 3677654 4566666554 489999999999854 457899999999999854 36787778888899999
Q ss_pred EEEEEeccCCCCCCCceEEEEECCCCcEEecC-------CCCcCCcCeeEEEECCEEEEEecccCCC-------CccCCe
Q 043540 230 IAILAGGCDPRGKLLKSAELYNSITGTWMPIS-------SMHKARKMCSGVFMDGKFYVIGGIGEGS-------SAMLTD 295 (437)
Q Consensus 230 ~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~-------~~~~~r~~~~~~~~~g~lyv~GG~~~~~-------~~~~~~ 295 (437)
+||+|||..+.+.+.++++..-...-.|+++. .+|.+|.+|+..++++|-|+|||...+. -.++++
T Consensus 93 rilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnD 172 (830)
T KOG4152|consen 93 RILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLND 172 (830)
T ss_pred eEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcc
Confidence 99999999888888887765555555577763 3567899999999999999999976111 146888
Q ss_pred EEEEECCCC----ceEec---CCCCCcccCCCCcccccccCCCCCEEEEE------CCEEEEEeCC----CCeEEEEeCC
Q 043540 296 VEMYDLETG----KWTQI---TDMFPARIGSDGVSVISAAGEAPPLLAVV------NNELYAADHE----KEEVRKFDKG 358 (437)
Q Consensus 296 v~~yd~~~~----~W~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ly~~gg~----~~~v~~yd~~ 358 (437)
++..++.-+ .|... ..+|.+|.. |.++.+ ..++|++||. .+++|.+|++
T Consensus 173 lY~leL~~Gsgvv~W~ip~t~Gv~P~pRES--------------HTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~ 238 (830)
T KOG4152|consen 173 LYILELRPGSGVVAWDIPITYGVLPPPRES--------------HTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLD 238 (830)
T ss_pred eEEEEeccCCceEEEecccccCCCCCCccc--------------ceeEEEEeccCCcceEEEEcccccccccceeEEecc
Confidence 888888755 38655 357888888 555655 3479999874 5789999999
Q ss_pred CCcEEEcc---CCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCC-------------CeeEEEeeecCCCCCCceec--
Q 043540 359 RKLWRTLG---RLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGG-------------GIVELNGWVPDEGPPHWKLL-- 420 (437)
Q Consensus 359 ~~~W~~v~---~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~-------------~~~~~~~~~~d~~~~~W~~l-- 420 (437)
+-+|.+.. ..|.++. . ++.+.+++++|||||....-. -+..+..| +..+..|+.+
T Consensus 239 Tl~W~kp~~~G~~PlPRS----L-Hsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~cl--Nldt~~W~tl~~ 311 (830)
T KOG4152|consen 239 TLTWNKPSLSGVAPLPRS----L-HSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACL--NLDTMAWETLLM 311 (830)
T ss_pred eeecccccccCCCCCCcc----c-ccceeecceeEEecceeeeeccccccccccceeeeccceeee--eecchheeeeee
Confidence 99999864 2233333 1 345689999999999742111 12222334 5568999977
Q ss_pred -----CccCCCceEeeeEEee
Q 043540 421 -----ARQPMCGFVFNCTVMG 436 (437)
Q Consensus 421 -----~~~p~~~~~~~~~v~~ 436 (437)
..+|++|-+|+++.+|
T Consensus 312 d~~ed~tiPR~RAGHCAvAig 332 (830)
T KOG4152|consen 312 DTLEDNTIPRARAGHCAVAIG 332 (830)
T ss_pred ccccccccccccccceeEEec
Confidence 2489999999998765
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.78 E-value=4.4e-17 Score=149.79 Aligned_cols=247 Identities=21% Similarity=0.297 Sum_probs=174.2
Q ss_pred CceEEEeccCC--CCeeeCCCCCCccccccCCceeEEeCCEEEEEcCcc--------CCceEEEEECCCCceecCCC-CC
Q 043540 148 LKEWEAFDPIH--HRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEV--------HGNAIYRYNLLTNTWSTGMT-MN 216 (437)
Q Consensus 148 ~~~~~~yDp~~--~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~--------~~~~v~~yd~~t~~W~~~~~-~~ 216 (437)
...|+..|... ..|+++...|...+... ..+.++++||+|||.. ..+++|+|||.+|+|+++.. .|
T Consensus 57 G~afy~ldL~~~~k~W~~~a~FpG~~rnqa---~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP 133 (381)
T COG3055 57 GTAFYVLDLKKPGKGWTKIADFPGGARNQA---VAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSP 133 (381)
T ss_pred CccceehhhhcCCCCceEcccCCCcccccc---hheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccccc
Confidence 45677777764 58999999888665433 2378899999999831 23789999999999999863 56
Q ss_pred CCccceeeEEECC-EEEEEeccCC---------------------------------CCCCCceEEEEECCCCcEEecCC
Q 043540 217 TPRCLFGSASLGE-IAILAGGCDP---------------------------------RGKLLKSAELYNSITGTWMPISS 262 (437)
Q Consensus 217 ~~r~~~~~~~~~~-~iyv~GG~~~---------------------------------~~~~~~~~~~yd~~t~~W~~~~~ 262 (437)
+.-..+.++++++ +||++||.+. .......+..|||.+++|+.+..
T Consensus 134 ~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~ 213 (381)
T COG3055 134 TGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGE 213 (381)
T ss_pred cccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCc
Confidence 6667778888887 9999999741 11124578899999999999987
Q ss_pred CCc-CCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECC--CCceEecCCCCCcccCCCCcccccccCCCCCEEEEEC
Q 043540 263 MHK-ARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLE--TGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVN 339 (437)
Q Consensus 263 ~~~-~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (437)
.|. ++...+.+.-++++.+|-|.- ...-....+..+|.. ..+|..++++|.+..... .+-+++..-..+
T Consensus 214 ~pf~~~aGsa~~~~~n~~~lInGEi-KpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~-------eGvAGaf~G~s~ 285 (381)
T COG3055 214 NPFYGNAGSAVVIKGNKLTLINGEI-KPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNK-------EGVAGAFSGKSN 285 (381)
T ss_pred CcccCccCcceeecCCeEEEEccee-cCCccccceeEEEeccCceeeeeccCCCCCCCCCc-------cccceeccceeC
Confidence 764 455544444577788888865 233344456666665 558999998877655410 000112223457
Q ss_pred CEEEEEeCC------------------------CCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCC
Q 043540 340 NELYAADHE------------------------KEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGP 395 (437)
Q Consensus 340 ~~ly~~gg~------------------------~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~ 395 (437)
+.+.+.||. ..+|+++| ++.|+.++.||..+. +|++ +..++.||+|||+
T Consensus 286 ~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~l~----YG~s-~~~nn~vl~IGGE 358 (381)
T COG3055 286 GEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQGLA----YGVS-LSYNNKVLLIGGE 358 (381)
T ss_pred CeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCCcc----ceEE-EecCCcEEEEccc
Confidence 777777752 24788888 899999999999765 4554 4779999999999
Q ss_pred CCCCCCeeEEEeeecCC
Q 043540 396 RDSGGGIVELNGWVPDE 412 (437)
Q Consensus 396 ~~~~~~~~~~~~~~~d~ 412 (437)
...+..+..+....+|-
T Consensus 359 ~~~Gka~~~v~~l~~~g 375 (381)
T COG3055 359 TSGGKATTRVYSLSWDG 375 (381)
T ss_pred cCCCeeeeeEEEEEEcC
Confidence 87766666665555553
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.62 E-value=1.1e-14 Score=134.12 Aligned_cols=193 Identities=21% Similarity=0.313 Sum_probs=155.8
Q ss_pred cCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCC--CcEEecCCCC-cCCcCeeEEEECCEEEEEecccC
Q 043540 211 TGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSIT--GTWMPISSMH-KARKMCSGVFMDGKFYVIGGIGE 287 (437)
Q Consensus 211 ~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t--~~W~~~~~~~-~~r~~~~~~~~~g~lyv~GG~~~ 287 (437)
.+|++|.+-..-+.+.+++.+||-=|..+ ...+..|.+. ..|+++...| .+|....+++++++|||+||...
T Consensus 29 ~lPdlPvg~KnG~Ga~ig~~~YVGLGs~G-----~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk 103 (381)
T COG3055 29 QLPDLPVGFKNGAGALIGDTVYVGLGSAG-----TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGK 103 (381)
T ss_pred cCCCCCccccccccceecceEEEEeccCC-----ccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeecccc
Confidence 56888888887788889999999877433 3445666654 4699999988 56888899999999999999872
Q ss_pred CC---CccCCeEEEEECCCCceEecCC-CCCcccCCCCcccccccCCCCCEEEEECC-EEEEEeCC--------------
Q 043540 288 GS---SAMLTDVEMYDLETGKWTQITD-MFPARIGSDGVSVISAAGEAPPLLAVVNN-ELYAADHE-------------- 348 (437)
Q Consensus 288 ~~---~~~~~~v~~yd~~~~~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ly~~gg~-------------- 348 (437)
.. ...++++++||+.+++|+++.. .|....+ +..+.+++ +||++||.
T Consensus 104 ~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G--------------~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~ 169 (381)
T COG3055 104 SVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVG--------------ASTFSLNGTKIYFFGGVNQNIFNGYFEDVGA 169 (381)
T ss_pred CCCCCceEeeeeEEecCCCChhheecccccccccc--------------ceeEecCCceEEEEccccHHhhhhhHHhhhh
Confidence 22 3467899999999999999985 3444444 66777777 99999871
Q ss_pred -------------------------CCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCee
Q 043540 349 -------------------------KEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIV 403 (437)
Q Consensus 349 -------------------------~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~ 403 (437)
...+..|||++++|+.++..|.... .|++++.-+++|.+|-|+..++-.+.
T Consensus 170 a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~----aGsa~~~~~n~~~lInGEiKpGLRt~ 245 (381)
T COG3055 170 AGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGN----AGSAVVIKGNKLTLINGEIKPGLRTA 245 (381)
T ss_pred hcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCc----cCcceeecCCeEEEEcceecCCcccc
Confidence 2479999999999999998888766 36777677889999999999988888
Q ss_pred EEEeeecCCCCCCceecCccCCC
Q 043540 404 ELNGWVPDEGPPHWKLLARQPMC 426 (437)
Q Consensus 404 ~~~~~~~d~~~~~W~~l~~~p~~ 426 (437)
++....+.....+|..++.+|..
T Consensus 246 ~~k~~~~~~~~~~w~~l~~lp~~ 268 (381)
T COG3055 246 EVKQADFGGDNLKWLKLSDLPAP 268 (381)
T ss_pred ceeEEEeccCceeeeeccCCCCC
Confidence 88888888889999999888753
No 29
>PF13964 Kelch_6: Kelch motif
Probab=99.28 E-value=1e-11 Score=84.65 Aligned_cols=50 Identities=30% Similarity=0.502 Sum_probs=46.3
Q ss_pred CccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCC
Q 043540 218 PRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKAR 267 (437)
Q Consensus 218 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r 267 (437)
||..|++++++++|||+||.......++++++||++|++|+.+++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 68899999999999999998875567899999999999999999999887
No 30
>PF13964 Kelch_6: Kelch motif
Probab=99.13 E-value=1.6e-10 Score=78.72 Aligned_cols=50 Identities=42% Similarity=0.626 Sum_probs=45.1
Q ss_pred CCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcc
Q 043540 266 ARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPAR 316 (437)
Q Consensus 266 ~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~ 316 (437)
+|..+++++++++|||+||.. ......+++++||+++++|+.+++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~-~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYD-NSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCC-CCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 588999999999999999997 22678899999999999999999999876
No 31
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.10 E-value=1.2e-10 Score=78.30 Aligned_cols=47 Identities=28% Similarity=0.496 Sum_probs=43.3
Q ss_pred CccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCC
Q 043540 218 PRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMH 264 (437)
Q Consensus 218 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~ 264 (437)
||..|++++++++|||+||.+.....++++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 68999999999999999999886678999999999999999999886
No 32
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=99.04 E-value=6.9e-08 Score=88.58 Aligned_cols=209 Identities=11% Similarity=0.051 Sum_probs=122.4
Q ss_pred eCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccce----eeEEE-----CCEEEEEeccCCCCCCCceEEEEECC
Q 043540 183 VGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLF----GSASL-----GEIAILAGGCDPRGKLLKSAELYNSI 253 (437)
Q Consensus 183 ~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~----~~~~~-----~~~iyv~GG~~~~~~~~~~~~~yd~~ 253 (437)
.+|.|++..+ ..++++||.|++|+.+|+.+.++... .+..+ ..||..+...... .....+++|++.
T Consensus 4 CnGLlc~~~~----~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~-~~~~~~~Vys~~ 78 (230)
T TIGR01640 4 CDGLICFSYG----KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN-RNQSEHQVYTLG 78 (230)
T ss_pred cceEEEEecC----CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC-CCCccEEEEEeC
Confidence 4666654432 57899999999999998655431111 11112 2266665443211 134678999999
Q ss_pred CCcEEecCCCCcC-CcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEe-cCCCCCcccCCCCcccccccCCC
Q 043540 254 TGTWMPISSMHKA-RKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQ-ITDMFPARIGSDGVSVISAAGEA 331 (437)
Q Consensus 254 t~~W~~~~~~~~~-r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~ 331 (437)
+++|+.+...+.. .....++.++|.||.+..... ......+..||+.+.+|.+ ++ +|...... ..
T Consensus 79 ~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~--~~~~~~IvsFDl~~E~f~~~i~-~P~~~~~~----------~~ 145 (230)
T TIGR01640 79 SNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLK--TNPDYFIVSFDVSSERFKEFIP-LPCGNSDS----------VD 145 (230)
T ss_pred CCCccccccCCCCccccCCeEEECCEEEEEEEECC--CCCcEEEEEEEcccceEeeeee-cCcccccc----------cc
Confidence 9999998743322 112237889999999975431 1111269999999999996 54 34332210 00
Q ss_pred CCEEEEECCEEEEEeCC----CCeEEEEe-CCCCcEEEccCCCC--cccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeE
Q 043540 332 PPLLAVVNNELYAADHE----KEEVRKFD-KGRKLWRTLGRLPE--QASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVE 404 (437)
Q Consensus 332 ~~~~~~~~~~ly~~gg~----~~~v~~yd-~~~~~W~~v~~lp~--~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~ 404 (437)
...++.++|+|.++... .-+||+.+ ...++|++.-.++. ............+..+++|++..... . .
T Consensus 146 ~~~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~-~-----~ 219 (230)
T TIGR01640 146 YLSLINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDE-N-----P 219 (230)
T ss_pred ceEEEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCC-C-----c
Confidence 13577889999988642 23677775 34567998654442 11111101233345678888876431 1 1
Q ss_pred EEeeecCCCCC
Q 043540 405 LNGWVPDEGPP 415 (437)
Q Consensus 405 ~~~~~~d~~~~ 415 (437)
..+..||++++
T Consensus 220 ~~~~~y~~~~~ 230 (230)
T TIGR01640 220 FYIFYYNVGEN 230 (230)
T ss_pred eEEEEEeccCC
Confidence 24666787664
No 33
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.01 E-value=2.9e-10 Score=108.95 Aligned_cols=185 Identities=20% Similarity=0.229 Sum_probs=127.7
Q ss_pred ECCCCceecCCC----------CCCCccceeeEEECC--EEEEEeccCCCCCCCceEEEEECCCCcEEecC---CCCcCC
Q 043540 203 NLLTNTWSTGMT----------MNTPRCLFGSASLGE--IAILAGGCDPRGKLLKSAELYNSITGTWMPIS---SMHKAR 267 (437)
Q Consensus 203 d~~t~~W~~~~~----------~~~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~---~~~~~r 267 (437)
.+.+-.|.++++ -|..|.+|.++...+ -||+.||+++.. .+.+.|.|+...+.|..+- ..|..|
T Consensus 235 ~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~-~l~DFW~Y~v~e~~W~~iN~~t~~PG~R 313 (723)
T KOG2437|consen 235 QEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQ-DLADFWAYSVKENQWTCINRDTEGPGAR 313 (723)
T ss_pred ccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccch-hHHHHHhhcCCcceeEEeecCCCCCcch
Confidence 345678887753 245699999998755 999999999875 4889999999999999873 478889
Q ss_pred cCeeEEEEC--CEEEEEecccCC----CCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCE
Q 043540 268 KMCSGVFMD--GKFYVIGGIGEG----SSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNE 341 (437)
Q Consensus 268 ~~~~~~~~~--g~lyv~GG~~~~----~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (437)
..|.+|..- .|||++|-+-.. ......++++||..++.|..+.--.....+.+ .-+-|.++|.+.+
T Consensus 314 sCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~--------~vfDHqM~Vd~~k 385 (723)
T KOG2437|consen 314 SCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPK--------LVFDHQMCVDSEK 385 (723)
T ss_pred hhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcc--------eeecceeeEecCc
Confidence 999998764 599999976511 12345689999999999998852222111100 0112677888777
Q ss_pred --EEEEeCC--------CCeEEEEeCCCCcEEEccCCCCcccC-----CCcccEE--EEEeCCEEEEEcCCC
Q 043540 342 --LYAADHE--------KEEVRKFDKGRKLWRTLGRLPEQASS-----MNGWGLA--FRACGDQLIVIGGPR 396 (437)
Q Consensus 342 --ly~~gg~--------~~~v~~yd~~~~~W~~v~~lp~~~~~-----~~~~~~a--~~~~~~~l~v~GG~~ 396 (437)
||++||. ...++.||.....|.....--..+.. ..+.|++ ++.-+..+|++||..
T Consensus 386 ~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~ 457 (723)
T KOG2437|consen 386 HMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQR 457 (723)
T ss_pred ceEEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcc
Confidence 9999984 35799999999999876421111000 0012332 234467899999865
No 34
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.94 E-value=1.3e-09 Score=73.09 Aligned_cols=47 Identities=36% Similarity=0.631 Sum_probs=42.4
Q ss_pred CCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCC
Q 043540 266 ARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMF 313 (437)
Q Consensus 266 ~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~ 313 (437)
+|..+++++++++|||+||.. ......+++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~-~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYD-GNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBE-STSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeec-ccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 588999999999999999998 35788899999999999999999876
No 35
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.88 E-value=5.4e-09 Score=70.74 Aligned_cols=47 Identities=23% Similarity=0.387 Sum_probs=41.8
Q ss_pred CccceeeEEECCEEEEEecc--CCCCCCCceEEEEECCCCcEEecCCCC
Q 043540 218 PRCLFGSASLGEIAILAGGC--DPRGKLLKSAELYNSITGTWMPISSMH 264 (437)
Q Consensus 218 ~r~~~~~~~~~~~iyv~GG~--~~~~~~~~~~~~yd~~t~~W~~~~~~~ 264 (437)
||..|++++++++|||+||+ +......+++++||+++++|+.++.|+
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 68899999999999999999 445567899999999999999998775
No 36
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.86 E-value=2.5e-09 Score=72.40 Aligned_cols=47 Identities=28% Similarity=0.451 Sum_probs=32.3
Q ss_pred CccceeeEEE-CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCC
Q 043540 218 PRCLFGSASL-GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMH 264 (437)
Q Consensus 218 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~ 264 (437)
||..|+++.+ +++|||+||.+..+..++++++||+++++|+++++||
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 6899999998 5899999999877678999999999999999998887
No 37
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.86 E-value=5.9e-09 Score=70.53 Aligned_cols=48 Identities=23% Similarity=0.394 Sum_probs=43.2
Q ss_pred CCEEEEEeccC-CCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE
Q 043540 228 GEIAILAGGCD-PRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM 275 (437)
Q Consensus 228 ~~~iyv~GG~~-~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 275 (437)
+++|||+||.+ .....++++++||+.+++|++++++|.+|..|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 57999999988 4566789999999999999999999999999998863
No 38
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=98.80 E-value=6.8e-09 Score=99.75 Aligned_cols=153 Identities=18% Similarity=0.215 Sum_probs=112.1
Q ss_pred CCCcEEecCC----------CCcCCcCeeEEEECC--EEEEEecccCCCCccCCeEEEEECCCCceEecC---CCCCccc
Q 043540 253 ITGTWMPISS----------MHKARKMCSGVFMDG--KFYVIGGIGEGSSAMLTDVEMYDLETGKWTQIT---DMFPARI 317 (437)
Q Consensus 253 ~t~~W~~~~~----------~~~~r~~~~~~~~~g--~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~~~ 317 (437)
-+..|.+++. -|..|.+|.+|...+ .||+.||.+ +.+.+.+.+.|....+.|+.+. ..|..|+
T Consensus 237 y~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWd--G~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~Rs 314 (723)
T KOG2437|consen 237 YKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWD--GTQDLADFWAYSVKENQWTCINRDTEGPGARS 314 (723)
T ss_pred ccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcc--cchhHHHHHhhcCCcceeEEeecCCCCCcchh
Confidence 3567887753 356688999999866 899999997 6778889999999999999986 3677788
Q ss_pred CCCCcccccccCCCCCEEEEEC--CEEEEEeC-----------CCCeEEEEeCCCCcEEEccCCCCc-ccCCCcccEEEE
Q 043540 318 GSDGVSVISAAGEAPPLLAVVN--NELYAADH-----------EKEEVRKFDKGRKLWRTLGRLPEQ-ASSMNGWGLAFR 383 (437)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~--~~ly~~gg-----------~~~~v~~yd~~~~~W~~v~~lp~~-~~~~~~~~~a~~ 383 (437)
. |-++..- .+||++|- ...++|+||..++.|..+.--... ....+-|-+.++
T Consensus 315 C--------------HRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~ 380 (723)
T KOG2437|consen 315 C--------------HRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMC 380 (723)
T ss_pred h--------------hhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceee
Confidence 7 4555543 48999983 135799999999999988522110 111122457788
Q ss_pred EeCCE--EEEEcCCCCCCCCeeEEEeeecCCCCCCceecC
Q 043540 384 ACGDQ--LIVIGGPRDSGGGIVELNGWVPDEGPPHWKLLA 421 (437)
Q Consensus 384 ~~~~~--l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~ 421 (437)
+.+++ |||+||+.-..+....--.|.||.....|+.+.
T Consensus 381 Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~ 420 (723)
T KOG2437|consen 381 VDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLR 420 (723)
T ss_pred EecCcceEEEecCeeccCCCccccceEEEecCCccHHHHH
Confidence 88877 999999864333334445788899999999874
No 39
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.76 E-value=2.7e-08 Score=67.29 Aligned_cols=48 Identities=38% Similarity=0.634 Sum_probs=41.8
Q ss_pred CCcCeeEEEECCEEEEEecc-cCCCCccCCeEEEEECCCCceEecCCCC
Q 043540 266 ARKMCSGVFMDGKFYVIGGI-GEGSSAMLTDVEMYDLETGKWTQITDMF 313 (437)
Q Consensus 266 ~r~~~~~~~~~g~lyv~GG~-~~~~~~~~~~v~~yd~~~~~W~~~~~~~ 313 (437)
+|..|++++++++|||+||. ........+++++||+++++|+.+++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 58899999999999999999 2245677889999999999999998764
No 40
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.74 E-value=1.8e-08 Score=68.14 Aligned_cols=49 Identities=31% Similarity=0.469 Sum_probs=43.0
Q ss_pred CCEEEEEcCCCCCCCCeeEEEeeecCCCCCCceecCccCCCceEeeeEEe
Q 043540 386 GDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKLLARQPMCGFVFNCTVM 435 (437)
Q Consensus 386 ~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~v~ 435 (437)
|++|||+||... .+.....++|.||+.+.+|++++.+|.+|+.|++++.
T Consensus 1 g~~~~vfGG~~~-~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDD-DGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCC-CCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 589999999875 3456668899999999999999999999999999873
No 41
>smart00612 Kelch Kelch domain.
Probab=98.73 E-value=2e-08 Score=67.08 Aligned_cols=47 Identities=32% Similarity=0.543 Sum_probs=41.5
Q ss_pred EEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEECC
Q 043540 230 IAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFMDG 277 (437)
Q Consensus 230 ~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~g 277 (437)
+||++||.... ..++++++||+.+++|+.+++|+.+|..++++.++|
T Consensus 1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-ceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 48999998653 457899999999999999999999999999988875
No 42
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.72 E-value=2e-08 Score=68.00 Aligned_cols=48 Identities=35% Similarity=0.596 Sum_probs=31.6
Q ss_pred CCcCeeEEEE-CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCC
Q 043540 266 ARKMCSGVFM-DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFP 314 (437)
Q Consensus 266 ~r~~~~~~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 314 (437)
+|..|+++.+ +++|||+||.. .....+++++.||+++++|++++++|.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~-~~~~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRD-SSGSPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EE-E-TEE---EEEEETTTTEEEE--SS--
T ss_pred CcceEEEEEEeCCeEEEECCCC-CCCcccCCEEEEECCCCEEEECCCCCC
Confidence 5889999988 69999999998 344789999999999999999987763
No 43
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.68 E-value=1.1e-05 Score=74.04 Aligned_cols=199 Identities=11% Similarity=0.057 Sum_probs=115.0
Q ss_pred ceEEEeccCCCCeeeCCCCCCccccccCCceeEEeC-----CEEEEEcCc---cCCceEEEEECCCCceecCCCCCCC-c
Q 043540 149 KEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVG-----TELLVFGKE---VHGNAIYRYNLLTNTWSTGMTMNTP-R 219 (437)
Q Consensus 149 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~-----~~lyv~GG~---~~~~~v~~yd~~t~~W~~~~~~~~~-r 219 (437)
.....+||.|++|..+|+.+.+.............+ -++..+... .....+.+|+..+++|+.+...+.. .
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~~~~~~ 93 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPPHHP 93 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccCCCCcc
Confidence 567889999999999987554321111000011111 144444321 1235789999999999998643221 1
Q ss_pred cceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEe-cCCCCcCC----cCeeEEEECCEEEEEecccCCCCccCC
Q 043540 220 CLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMP-ISSMHKAR----KMCSGVFMDGKFYVIGGIGEGSSAMLT 294 (437)
Q Consensus 220 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~r----~~~~~~~~~g~lyv~GG~~~~~~~~~~ 294 (437)
.....+.+++.+|.+...... .....+..||..+.+|+. ++ +|..+ .....+.++|+|.++..... . ..-
T Consensus 94 ~~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~E~f~~~i~-~P~~~~~~~~~~~L~~~~G~L~~v~~~~~-~--~~~ 168 (230)
T TIGR01640 94 LKSRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSERFKEFIP-LPCGNSDSVDYLSLINYKGKLAVLKQKKD-T--NNF 168 (230)
T ss_pred ccCCeEEECCEEEEEEEECCC-CCcEEEEEEEcccceEeeeee-cCccccccccceEEEEECCEEEEEEecCC-C--CcE
Confidence 122377889999998753321 111378999999999995 53 34322 23456778999998865431 1 113
Q ss_pred eEEEEE-CCCCceEecCCCCCc-ccCCCCcccccccCCCCCEEEEECCEEEEEeCC--CCeEEEEeCCCC
Q 043540 295 DVEMYD-LETGKWTQITDMFPA-RIGSDGVSVISAAGEAPPLLAVVNNELYAADHE--KEEVRKFDKGRK 360 (437)
Q Consensus 295 ~v~~yd-~~~~~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~--~~~v~~yd~~~~ 360 (437)
.+++.+ -....|+++-.++.+ .... .....+..+..+|+|++.... ..-+..||++++
T Consensus 169 ~IWvl~d~~~~~W~k~~~i~~~~~~~~--------~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 169 DLWVLNDAGKQEWSKLFTVPIPPLPDL--------VDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVGEN 230 (230)
T ss_pred EEEEECCCCCCceeEEEEEcCcchhhh--------hhheeEeEEeeCCEEEEEeCCCCceEEEEEeccCC
Confidence 455554 445679976544321 1010 000113345668888887654 223999999875
No 44
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.66 E-value=2e-06 Score=78.19 Aligned_cols=153 Identities=17% Similarity=0.216 Sum_probs=98.5
Q ss_pred EEEEECCCCceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCC----CcEEecC-CCCcCCcCeeEE
Q 043540 199 IYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSIT----GTWMPIS-SMHKARKMCSGV 273 (437)
Q Consensus 199 v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t----~~W~~~~-~~~~~r~~~~~~ 273 (437)
-..||+.|++++.+.-..-.-|.-++..-++++++.||.... ...+..|++.+ ..|.+.+ .|..+|.+.++.
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~ 124 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTAT 124 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECcccccCCCccccce
Confidence 456999999999876432223322333348899999997542 35677888865 6798886 589999999888
Q ss_pred EE-CCEEEEEecccCCCCccCCeEEEEECCCC-----ceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeC
Q 043540 274 FM-DGKFYVIGGIGEGSSAMLTDVEMYDLETG-----KWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADH 347 (437)
Q Consensus 274 ~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~~~-----~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg 347 (437)
.+ ||+++|+||.. ....|.+..... .|..+........ ..-+|...+.-+|+||+++.
T Consensus 125 ~L~DG~vlIvGG~~------~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~----------~nlYP~~~llPdG~lFi~an 188 (243)
T PF07250_consen 125 TLPDGRVLIVGGSN------NPTYEFWPPKGPGPGPVTLPFLSQTSDTLP----------NNLYPFVHLLPDGNLFIFAN 188 (243)
T ss_pred ECCCCCEEEEeCcC------CCcccccCCccCCCCceeeecchhhhccCc----------cccCceEEEcCCCCEEEEEc
Confidence 77 89999999986 122333333221 1111111111000 11233445556999999975
Q ss_pred CCCeEEEEeCCCCcE-EEccCCCCcc
Q 043540 348 EKEEVRKFDKGRKLW-RTLGRLPEQA 372 (437)
Q Consensus 348 ~~~~v~~yd~~~~~W-~~v~~lp~~~ 372 (437)
. .-.+||+.++++ +.++.+|...
T Consensus 189 ~--~s~i~d~~~n~v~~~lP~lPg~~ 212 (243)
T PF07250_consen 189 R--GSIIYDYKTNTVVRTLPDLPGGP 212 (243)
T ss_pred C--CcEEEeCCCCeEEeeCCCCCCCc
Confidence 4 567889999987 7888888753
No 45
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.65 E-value=1.4e-06 Score=79.13 Aligned_cols=156 Identities=14% Similarity=0.147 Sum_probs=101.1
Q ss_pred ceEEEEECCCCcEEecCCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCC----CceEecC-CCCCcccCC
Q 043540 245 KSAELYNSITGTWMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLET----GKWTQIT-DMFPARIGS 319 (437)
Q Consensus 245 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~----~~W~~~~-~~~~~~~~~ 319 (437)
.....||+.+++++.+.-....-....++.-||++.++||... ....+-.|++.+ ..|.+.. .|..+|-.
T Consensus 46 a~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~----G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWY- 120 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDND----GNKAIRIFTPCTSDGTCDWTESPNDMQSGRWY- 120 (243)
T ss_pred EEEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCc----cccceEEEecCCCCCCCCceECcccccCCCcc-
Confidence 4467899999999987643322222223344999999999862 234466788765 6798886 47777766
Q ss_pred CCcccccccCCCCCEEEE-ECCEEEEEeCCCCeEEEEeCCCC---c---EEEccCCCCcccCCCcccEEEEEeCCEEEEE
Q 043540 320 DGVSVISAAGEAPPLLAV-VNNELYAADHEKEEVRKFDKGRK---L---WRTLGRLPEQASSMNGWGLAFRACGDQLIVI 392 (437)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~~~v~~yd~~~~---~---W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~ 392 (437)
+++.. -||+++|+||..+..+.|-+... . |..+..... ....+-+-...+.-+|+||++
T Consensus 121 -------------pT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~-~~~~nlYP~~~llPdG~lFi~ 186 (243)
T PF07250_consen 121 -------------PTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSD-TLPNNLYPFVHLLPDGNLFIF 186 (243)
T ss_pred -------------ccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhc-cCccccCceEEEcCCCCEEEE
Confidence 55444 48999999998776666666521 1 222222111 111222445566778999999
Q ss_pred cCCCCCCCCeeEEEeeecCCCCCCc-eecCccCCCceE
Q 043540 393 GGPRDSGGGIVELNGWVPDEGPPHW-KLLARQPMCGFV 429 (437)
Q Consensus 393 GG~~~~~~~~~~~~~~~~d~~~~~W-~~l~~~p~~~~~ 429 (437)
+... .+.||+.++++ +.++.+|.+...
T Consensus 187 an~~----------s~i~d~~~n~v~~~lP~lPg~~R~ 214 (243)
T PF07250_consen 187 ANRG----------SIIYDYKTNTVVRTLPDLPGGPRN 214 (243)
T ss_pred EcCC----------cEEEeCCCCeEEeeCCCCCCCcee
Confidence 8754 45578888877 789999976333
No 46
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=98.55 E-value=7e-05 Score=72.19 Aligned_cols=105 Identities=12% Similarity=0.082 Sum_probs=64.8
Q ss_pred CCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCcEEEccCCCC-ccc-CCCcccE
Q 043540 303 TGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKLWRTLGRLPE-QAS-SMNGWGL 380 (437)
Q Consensus 303 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~-~~~-~~~~~~~ 380 (437)
.+.|+.+..+...- .-++.++|++|+++. ...+++++.+- .=.+++.... ... ...+...
T Consensus 189 ~~~Wt~l~~~~~~~----------------~DIi~~kGkfYAvD~-~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~ 250 (373)
T PLN03215 189 GNVLKALKQMGYHF----------------SDIIVHKGQTYALDS-IGIVYWINSDL-EFSRFGTSLDENITDGCWTGDR 250 (373)
T ss_pred CCeeeEccCCCcee----------------eEEEEECCEEEEEcC-CCeEEEEecCC-ceeeecceecccccCCcccCce
Confidence 48999997533332 248999999999964 46788888532 1223322110 000 0000113
Q ss_pred EEEEeCCEEEEEcCCCCC-----------CCCeeEEEeeecCCCCCCceecCccCC
Q 043540 381 AFRACGDQLIVIGGPRDS-----------GGGIVELNGWVPDEGPPHWKLLARQPM 425 (437)
Q Consensus 381 a~~~~~~~l~v~GG~~~~-----------~~~~~~~~~~~~d~~~~~W~~l~~~p~ 425 (437)
-++...|+|+++...... ...+....+|+.|.++.+|.++..+..
T Consensus 251 yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd 306 (373)
T PLN03215 251 RFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGD 306 (373)
T ss_pred eEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCC
Confidence 366778889988764211 123567889999999999999988864
No 47
>smart00612 Kelch Kelch domain.
Probab=98.45 E-value=3.9e-07 Score=60.71 Aligned_cols=39 Identities=46% Similarity=0.813 Sum_probs=34.5
Q ss_pred EEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccC
Q 043540 278 KFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIG 318 (437)
Q Consensus 278 ~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~ 318 (437)
+||++||.. .....+++++||+.+++|+.+++|+.+|..
T Consensus 1 ~iyv~GG~~--~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~ 39 (47)
T smart00612 1 KIYVVGGFD--GGQRLKSVEVYDPETNKWTPLPSMPTPRSG 39 (47)
T ss_pred CEEEEeCCC--CCceeeeEEEECCCCCeEccCCCCCCcccc
Confidence 589999986 345678899999999999999999999988
No 48
>PLN02772 guanylate kinase
Probab=98.42 E-value=2e-06 Score=83.08 Aligned_cols=83 Identities=20% Similarity=0.289 Sum_probs=68.2
Q ss_pred CCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecC---CCCcCCcCeeEEEE-CCEEEEEecccCCCCcc
Q 043540 217 TPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPIS---SMHKARKMCSGVFM-DGKFYVIGGIGEGSSAM 292 (437)
Q Consensus 217 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~---~~~~~r~~~~~~~~-~g~lyv~GG~~~~~~~~ 292 (437)
.++..++++.+++++||+||.++.+...+.+++||..|++|.... ..|.+|.+|+++++ +++|+|+++.. ..
T Consensus 23 ~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~----~~ 98 (398)
T PLN02772 23 KPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGS----AP 98 (398)
T ss_pred CCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCC----CC
Confidence 478889999999999999998776556789999999999998764 67899999999988 68999997654 22
Q ss_pred CCeEEEEECCC
Q 043540 293 LTDVEMYDLET 303 (437)
Q Consensus 293 ~~~v~~yd~~~ 303 (437)
-.++|.....|
T Consensus 99 ~~~~w~l~~~t 109 (398)
T PLN02772 99 DDSIWFLEVDT 109 (398)
T ss_pred ccceEEEEcCC
Confidence 35677666655
No 49
>PF13854 Kelch_5: Kelch motif
Probab=98.30 E-value=1.7e-06 Score=56.25 Aligned_cols=41 Identities=12% Similarity=0.163 Sum_probs=36.2
Q ss_pred CCCCccceeeEEECCEEEEEeccCC-CCCCCceEEEEECCCC
Q 043540 215 MNTPRCLFGSASLGEIAILAGGCDP-RGKLLKSAELYNSITG 255 (437)
Q Consensus 215 ~~~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~yd~~t~ 255 (437)
+|.+|..|++++++++||++||.+. .....+++++||..+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 4789999999999999999999984 6667899999998763
No 50
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.29 E-value=4.5e-07 Score=60.62 Aligned_cols=42 Identities=19% Similarity=0.327 Sum_probs=36.8
Q ss_pred CCCCCHHHHHHHhhccCccchhhHHHHhHHHHHhhcCcchHH
Q 043540 89 IPELGRDITINCLLRCSRSDYGAIASLNRAFRSLIQSGELYR 130 (437)
Q Consensus 89 ~~~LP~dl~~~~L~rlP~~~~~~~~~V~k~w~sli~s~~~y~ 130 (437)
|..||+|++.+||..||..++.+++.|||+|+.++.++.++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~ 42 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWR 42 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhh
Confidence 578999999999999999999999999999999998886664
No 51
>PF13854 Kelch_5: Kelch motif
Probab=98.14 E-value=6.7e-06 Score=53.36 Aligned_cols=41 Identities=22% Similarity=0.410 Sum_probs=35.9
Q ss_pred CCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCC
Q 043540 263 MHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLET 303 (437)
Q Consensus 263 ~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~ 303 (437)
+|.+|..|++++++++||++||.........+++++||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 47899999999999999999999843567789999999876
No 52
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.03 E-value=0.0082 Score=59.70 Aligned_cols=216 Identities=16% Similarity=0.175 Sum_probs=118.3
Q ss_pred EEEEEecCceEEEeccCCC--Ceee-CCCCCCccc---cccCCceeEEeCCEEEEEcCccCCceEEEEECCCC--ceecC
Q 043540 141 WVYFSCKLKEWEAFDPIHH--RWMH-LPPMNASDC---FMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTN--TWSTG 212 (437)
Q Consensus 141 ~l~~~~~~~~~~~yDp~~~--~W~~-l~~~p~~~~---~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~--~W~~~ 212 (437)
.+|+......+.+||..++ .|.. +..-..... ........+..++.+|+.+ ....++.+|..|+ .|+.-
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~---~~g~l~ald~~tG~~~W~~~ 147 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGS---EKGQVYALNAEDGEVAWQTK 147 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEc---CCCEEEEEECCCCCCccccc
Confidence 3444444456788898765 5864 222000000 0001122356788888754 2346899999876 58653
Q ss_pred CCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCc--EEecCCCCc--CCcCeeEEEECCEEEEEecccCC
Q 043540 213 MTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGT--WMPISSMHK--ARKMCSGVFMDGKFYVIGGIGEG 288 (437)
Q Consensus 213 ~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~--~r~~~~~~~~~g~lyv~GG~~~~ 288 (437)
.+ .+ ...+-++.++.+|+..+ ...+..+|+++++ |+.-...+. .+...+-++.++.+|+..+..
T Consensus 148 ~~--~~-~~ssP~v~~~~v~v~~~-------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g-- 215 (394)
T PRK11138 148 VA--GE-ALSRPVVSDGLVLVHTS-------NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNG-- 215 (394)
T ss_pred CC--Cc-eecCCEEECCEEEEECC-------CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCC--
Confidence 22 11 11233456788887533 2568999999887 887543331 122334456678887754432
Q ss_pred CCccCCeEEEEECCCCc--eEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCc--EEE
Q 043540 289 SSAMLTDVEMYDLETGK--WTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKL--WRT 364 (437)
Q Consensus 289 ~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~--W~~ 364 (437)
.+..+|+++++ |+.--..+....... .+ .......++.++.+|+.+. ...++.+|+.+.+ |+.
T Consensus 216 ------~v~a~d~~~G~~~W~~~~~~~~~~~~~~---~~---~~~~~sP~v~~~~vy~~~~-~g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 216 ------RVSAVLMEQGQLIWQQRISQPTGATEID---RL---VDVDTTPVVVGGVVYALAY-NGNLVALDLRSGQIVWKR 282 (394)
T ss_pred ------EEEEEEccCChhhheeccccCCCccchh---cc---cccCCCcEEECCEEEEEEc-CCeEEEEECCCCCEEEee
Confidence 47888888764 764322111100000 00 0000123567899998764 4679999998864 875
Q ss_pred ccCCCCcccCCCcccEEEEEeCCEEEEEcC
Q 043540 365 LGRLPEQASSMNGWGLAFRACGDQLIVIGG 394 (437)
Q Consensus 365 v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG 394 (437)
- .... ...++.+++||+...
T Consensus 283 ~--~~~~--------~~~~~~~~~vy~~~~ 302 (394)
T PRK11138 283 E--YGSV--------NDFAVDGGRIYLVDQ 302 (394)
T ss_pred c--CCCc--------cCcEEECCEEEEEcC
Confidence 2 1111 113456888998753
No 53
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.00 E-value=6.3e-06 Score=53.12 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=36.4
Q ss_pred CCHHHHHHHhhccCccchhhHHHHhHHHHHhhcCcchHH
Q 043540 92 LGRDITINCLLRCSRSDYGAIASLNRAFRSLIQSGELYR 130 (437)
Q Consensus 92 LP~dl~~~~L~rlP~~~~~~~~~V~k~w~sli~s~~~y~ 130 (437)
||+|++..|+.+|+..++.+++.|||+|+.++.++.++.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999887764
No 54
>PLN02772 guanylate kinase
Probab=97.98 E-value=6.2e-05 Score=72.91 Aligned_cols=80 Identities=18% Similarity=0.257 Sum_probs=63.2
Q ss_pred cCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecC---CCCCcccCCCCcccccccCCCCCEEEEE-CC
Q 043540 265 KARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQIT---DMFPARIGSDGVSVISAAGEAPPLLAVV-NN 340 (437)
Q Consensus 265 ~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 340 (437)
.++..++++.+++++||+||.+ ......+.+++||..+++|..-. ..|.+|.+ |+++++ ++
T Consensus 23 ~~~~~~tav~igdk~yv~GG~~-d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~G--------------hSa~v~~~~ 87 (398)
T PLN02772 23 KPKNRETSVTIGDKTYVIGGNH-EGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKG--------------YSAVVLNKD 87 (398)
T ss_pred CCCCcceeEEECCEEEEEcccC-CCccccceEEEEECCCCcEecccccCCCCCCCCc--------------ceEEEECCc
Confidence 4678899999999999999976 33336788999999999998664 67888888 677777 68
Q ss_pred EEEEEeC---CCCeEEEEeCCC
Q 043540 341 ELYAADH---EKEEVRKFDKGR 359 (437)
Q Consensus 341 ~ly~~gg---~~~~v~~yd~~~ 359 (437)
+|++++. ...++|.+...|
T Consensus 88 rilv~~~~~~~~~~~w~l~~~t 109 (398)
T PLN02772 88 RILVIKKGSAPDDSIWFLEVDT 109 (398)
T ss_pred eEEEEeCCCCCccceEEEEcCC
Confidence 9999964 245677776655
No 55
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.95 E-value=0.0039 Score=57.01 Aligned_cols=181 Identities=21% Similarity=0.262 Sum_probs=110.7
Q ss_pred ccEEEEEecCceEEEeccCCCC--eeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCC--cee-cCC
Q 043540 139 EHWVYFSCKLKEWEAFDPIHHR--WMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTN--TWS-TGM 213 (437)
Q Consensus 139 ~~~l~~~~~~~~~~~yDp~~~~--W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~--~W~-~~~ 213 (437)
+..+|+......+.++|+.+++ |..-. +.+... ..+..++.+|+... .+.++.+|..++ .|+ ...
T Consensus 36 ~~~v~~~~~~~~l~~~d~~tG~~~W~~~~--~~~~~~-----~~~~~~~~v~v~~~---~~~l~~~d~~tG~~~W~~~~~ 105 (238)
T PF13360_consen 36 GGRVYVASGDGNLYALDAKTGKVLWRFDL--PGPISG-----APVVDGGRVYVGTS---DGSLYALDAKTGKVLWSIYLT 105 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSEEEEEEEC--SSCGGS-----GEEEETTEEEEEET---TSEEEEEETTTSCEEEEEEE-
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEeec--cccccc-----eeeecccccccccc---eeeeEecccCCcceeeeeccc
Confidence 3445665566788999998774 65432 222111 12677888888762 237999998876 487 343
Q ss_pred CCCCC--ccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCc--EEecCCCCcCCc--------CeeEEEECCEEEE
Q 043540 214 TMNTP--RCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGT--WMPISSMHKARK--------MCSGVFMDGKFYV 281 (437)
Q Consensus 214 ~~~~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~r~--------~~~~~~~~g~lyv 281 (437)
..+.. .......+.++.+|+... ...+..+|+.+++ |+.-...+.... ....+..++.+|+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 178 (238)
T PF13360_consen 106 SSPPAGVRSSSSPAVDGDRLYVGTS-------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYV 178 (238)
T ss_dssp SSCTCSTB--SEEEEETTEEEEEET-------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEE
T ss_pred cccccccccccCceEecCEEEEEec-------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEE
Confidence 32222 223344455777777653 2678999999887 876544433211 2333444688898
Q ss_pred EecccCCCCccCCeEEEEECCCCc--eEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCC
Q 043540 282 IGGIGEGSSAMLTDVEMYDLETGK--WTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGR 359 (437)
Q Consensus 282 ~GG~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~ 359 (437)
..+.. .+..+|..+++ |+.. +.. .. ......++.||+.. ....++++|+++
T Consensus 179 ~~~~g--------~~~~~d~~tg~~~w~~~--~~~--~~--------------~~~~~~~~~l~~~~-~~~~l~~~d~~t 231 (238)
T PF13360_consen 179 SSGDG--------RVVAVDLATGEKLWSKP--ISG--IY--------------SLPSVDGGTLYVTS-SDGRLYALDLKT 231 (238)
T ss_dssp ECCTS--------SEEEEETTTTEEEEEEC--SS---EC--------------ECEECCCTEEEEEE-TTTEEEEEETTT
T ss_pred EcCCC--------eEEEEECCCCCEEEEec--CCC--cc--------------CCceeeCCEEEEEe-CCCEEEEEECCC
Confidence 86654 15666999997 8333 222 11 12456678888887 678899999998
Q ss_pred Cc--EE
Q 043540 360 KL--WR 363 (437)
Q Consensus 360 ~~--W~ 363 (437)
++ |+
T Consensus 232 G~~~W~ 237 (238)
T PF13360_consen 232 GKVVWQ 237 (238)
T ss_dssp TEEEEE
T ss_pred CCEEeE
Confidence 75 65
No 56
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.93 E-value=0.00038 Score=64.68 Aligned_cols=44 Identities=18% Similarity=0.284 Sum_probs=39.1
Q ss_pred CCCCCCC----HHHHHHHhhccCccchhhHHHHhHHHHHhhcCcchHH
Q 043540 87 SLIPELG----RDITINCLLRCSRSDYGAIASLNRAFRSLIQSGELYR 130 (437)
Q Consensus 87 ~~~~~LP----~dl~~~~L~rlP~~~~~~~~~V~k~w~sli~s~~~y~ 130 (437)
..+..|| +++.++||+.|...+++.+..|||+|+.++..+-++.
T Consensus 73 DFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WK 120 (499)
T KOG0281|consen 73 DFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWK 120 (499)
T ss_pred HHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHH
Confidence 3456788 9999999999999999999999999999999887763
No 57
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=97.91 E-value=1.7e-06 Score=58.13 Aligned_cols=43 Identities=21% Similarity=0.342 Sum_probs=36.2
Q ss_pred CCCCCCHHHHHHHhhccCccchhhHHHHhHHHHHhhcCcchHH
Q 043540 88 LIPELGRDITINCLLRCSRSDYGAIASLNRAFRSLIQSGELYR 130 (437)
Q Consensus 88 ~~~~LP~dl~~~~L~rlP~~~~~~~~~V~k~w~sli~s~~~y~ 130 (437)
.|..||+|++.+|+.+|+..++.+++.|||+|+.++.+..++.
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~ 44 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWK 44 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccH
Confidence 3567999999999999999999999999999999999887764
No 58
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.89 E-value=0.019 Score=57.07 Aligned_cols=202 Identities=17% Similarity=0.194 Sum_probs=117.2
Q ss_pred cEEEEEecCceEEEeccCCC--CeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCc--eecCCCC
Q 043540 140 HWVYFSCKLKEWEAFDPIHH--RWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNT--WSTGMTM 215 (437)
Q Consensus 140 ~~l~~~~~~~~~~~yDp~~~--~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~--W~~~~~~ 215 (437)
..+|+......++++|..++ .|+.-. +.+.. ..-+..++.+|+..+ ...++.+|+.|++ |+.-...
T Consensus 121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~--~~~~~-----ssP~v~~~~v~v~~~---~g~l~ald~~tG~~~W~~~~~~ 190 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDGEVAWQTKV--AGEAL-----SRPVVSDGLVLVHTS---NGMLQALNESDGAVKWTVNLDV 190 (394)
T ss_pred CEEEEEcCCCEEEEEECCCCCCcccccC--CCcee-----cCCEEECCEEEEECC---CCEEEEEEccCCCEeeeecCCC
Confidence 34555555567899998876 586432 21111 112556788887542 3468999998875 7754332
Q ss_pred CC--CccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCc--EEecCCCCcC--------CcCeeEEEECCEEEEEe
Q 043540 216 NT--PRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGT--WMPISSMHKA--------RKMCSGVFMDGKFYVIG 283 (437)
Q Consensus 216 ~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~--------r~~~~~~~~~g~lyv~G 283 (437)
+. .+...+-++.++.+|+..+ ...+..+|+++++ |+.-...+.. ....+-++.++.+|+.+
T Consensus 191 ~~~~~~~~~sP~v~~~~v~~~~~-------~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~ 263 (394)
T PRK11138 191 PSLTLRGESAPATAFGGAIVGGD-------NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA 263 (394)
T ss_pred CcccccCCCCCEEECCEEEEEcC-------CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEE
Confidence 21 1222233455777776543 1457788888875 8753222211 11234456799999875
Q ss_pred cccCCCCccCCeEEEEECCCCc--eEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCc
Q 043540 284 GIGEGSSAMLTDVEMYDLETGK--WTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKL 361 (437)
Q Consensus 284 G~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~ 361 (437)
.. ..+.++|+.+++ |+.-. .. . ...++.+++||+... ...++.+|.++.+
T Consensus 264 ~~--------g~l~ald~~tG~~~W~~~~--~~---~--------------~~~~~~~~~vy~~~~-~g~l~ald~~tG~ 315 (394)
T PRK11138 264 YN--------GNLVALDLRSGQIVWKREY--GS---V--------------NDFAVDGGRIYLVDQ-NDRVYALDTRGGV 315 (394)
T ss_pred cC--------CeEEEEECCCCCEEEeecC--CC---c--------------cCcEEECCEEEEEcC-CCeEEEEECCCCc
Confidence 32 258899998875 86521 11 1 124667899999864 4679999998764
Q ss_pred --EEEccCCCCcccCCCcccEEEEEeCCEEEEEc
Q 043540 362 --WRTLGRLPEQASSMNGWGLAFRACGDQLIVIG 393 (437)
Q Consensus 362 --W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~G 393 (437)
|+.-. +.... + .+.++.+++||+..
T Consensus 316 ~~W~~~~-~~~~~-----~-~sp~v~~g~l~v~~ 342 (394)
T PRK11138 316 ELWSQSD-LLHRL-----L-TAPVLYNGYLVVGD 342 (394)
T ss_pred EEEcccc-cCCCc-----c-cCCEEECCEEEEEe
Confidence 86421 11111 1 12335688888764
No 59
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.76 E-value=0.031 Score=50.99 Aligned_cols=221 Identities=16% Similarity=0.178 Sum_probs=120.3
Q ss_pred eEEEeccCCC--CeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCc--eecCCCCCCCccceeeE
Q 043540 150 EWEAFDPIHH--RWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNT--WSTGMTMNTPRCLFGSA 225 (437)
Q Consensus 150 ~~~~yDp~~~--~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~--W~~~~~~~~~r~~~~~~ 225 (437)
.+.++|+.++ .|..- +........ ...+..++.+|+.. ....++++|+.|++ |+.-. +.+-. ....
T Consensus 4 ~l~~~d~~tG~~~W~~~--~~~~~~~~~--~~~~~~~~~v~~~~---~~~~l~~~d~~tG~~~W~~~~--~~~~~-~~~~ 73 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYD--LGPGIGGPV--ATAVPDGGRVYVAS---GDGNLYALDAKTGKVLWRFDL--PGPIS-GAPV 73 (238)
T ss_dssp EEEEEETTTTEEEEEEE--CSSSCSSEE--ETEEEETTEEEEEE---TTSEEEEEETTTSEEEEEEEC--SSCGG-SGEE
T ss_pred EEEEEECCCCCEEEEEE--CCCCCCCcc--ceEEEeCCEEEEEc---CCCEEEEEECCCCCEEEEeec--ccccc-ceee
Confidence 4677888766 47651 111111100 00234788888874 45679999998875 55432 22211 1247
Q ss_pred EECCEEEEEeccCCCCCCCceEEEEECCCCc--EE-ecCCCCcC--CcCeeEEEECCEEEEEecccCCCCccCCeEEEEE
Q 043540 226 SLGEIAILAGGCDPRGKLLKSAELYNSITGT--WM-PISSMHKA--RKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYD 300 (437)
Q Consensus 226 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~-~~~~~~~~--r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd 300 (437)
..++.+|+..+ ...+..+|..+++ |+ .....+.. .......+.++.+|+.... ..+..+|
T Consensus 74 ~~~~~v~v~~~-------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~l~~~d 138 (238)
T PF13360_consen 74 VDGGRVYVGTS-------DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSS--------GKLVALD 138 (238)
T ss_dssp EETTEEEEEET-------TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETC--------SEEEEEE
T ss_pred ecccccccccc-------eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEecc--------CcEEEEe
Confidence 78899988862 1478999988877 98 45432322 2333445557778776532 2489999
Q ss_pred CCCCc--eEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCc--EEEccCCCCcccCCC
Q 043540 301 LETGK--WTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKL--WRTLGRLPEQASSMN 376 (437)
Q Consensus 301 ~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~--W~~v~~lp~~~~~~~ 376 (437)
+++++ |+.-...+..... +. .........+..++.+|+..+... +..+|..+++ |+.. +.. .
T Consensus 139 ~~tG~~~w~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~v~~~~~~g~-~~~~d~~tg~~~w~~~--~~~-~---- 204 (238)
T PF13360_consen 139 PKTGKLLWKYPVGEPRGSSP----IS--SFSDINGSPVISDGRVYVSSGDGR-VVAVDLATGEKLWSKP--ISG-I---- 204 (238)
T ss_dssp TTTTEEEEEEESSTT-SS------EE--EETTEEEEEECCTTEEEEECCTSS-EEEEETTTTEEEEEEC--SS--E----
T ss_pred cCCCcEEEEeecCCCCCCcc----ee--eecccccceEEECCEEEEEcCCCe-EEEEECCCCCEEEEec--CCC-c----
Confidence 99875 7654433332110 00 000000123344688888875544 6666999987 8433 222 1
Q ss_pred cccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCce
Q 043540 377 GWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWK 418 (437)
Q Consensus 377 ~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~ 418 (437)
.......++.||+.. .. ..+.+++.......|+
T Consensus 205 --~~~~~~~~~~l~~~~-~~------~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 205 --YSLPSVDGGTLYVTS-SD------GRLYALDLKTGKVVWQ 237 (238)
T ss_dssp --CECEECCCTEEEEEE-TT------TEEEEEETTTTEEEEE
T ss_pred --cCCceeeCCEEEEEe-CC------CEEEEEECCCCCEEeE
Confidence 122346678888876 22 1344554444445665
No 60
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.74 E-value=0.052 Score=53.54 Aligned_cols=227 Identities=17% Similarity=0.159 Sum_probs=120.6
Q ss_pred EEEEEecCceEEEeccCCC--CeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCc--eecCCCCC
Q 043540 141 WVYFSCKLKEWEAFDPIHH--RWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNT--WSTGMTMN 216 (437)
Q Consensus 141 ~l~~~~~~~~~~~yDp~~~--~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~--W~~~~~~~ 216 (437)
.+|+......+.+||+.++ .|..--. .... ...+..++.+|+.+ ....++.+|+.+++ |+.-..
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~--~~~~-----~~p~v~~~~v~v~~---~~g~l~ald~~tG~~~W~~~~~-- 134 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLD--ERLS-----GGVGADGGLVFVGT---EKGEVIALDAEDGKELWRAKLS-- 134 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCC--CCcc-----cceEEcCCEEEEEc---CCCEEEEEECCCCcEeeeeccC--
Confidence 3455444567889998876 4764211 1111 12245577777654 23578999987764 765322
Q ss_pred CCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCc--EEecCCCCc--CCcCeeEEEECCEEEEEecccCCCCcc
Q 043540 217 TPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGT--WMPISSMHK--ARKMCSGVFMDGKFYVIGGIGEGSSAM 292 (437)
Q Consensus 217 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~--~r~~~~~~~~~g~lyv~GG~~~~~~~~ 292 (437)
.. .....++.++.+|+..+ ...+..+|+++++ |+.-...+. .+...+.++.++.+|+. ...
T Consensus 135 ~~-~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~-~~~------ 199 (377)
T TIGR03300 135 SE-VLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVG-FAG------ 199 (377)
T ss_pred ce-eecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEE-CCC------
Confidence 11 11233446778877533 2568899998775 875432221 12233445667766643 221
Q ss_pred CCeEEEEECCCCc--eEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCc--EEEccCC
Q 043540 293 LTDVEMYDLETGK--WTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKL--WRTLGRL 368 (437)
Q Consensus 293 ~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~--W~~v~~l 368 (437)
..+..+|+.+++ |+.-...+...... .. ........++.++.+|+... .+.+++||+++.+ |..-.
T Consensus 200 -g~v~ald~~tG~~~W~~~~~~~~g~~~~---~~---~~~~~~~p~~~~~~vy~~~~-~g~l~a~d~~tG~~~W~~~~-- 269 (377)
T TIGR03300 200 -GKLVALDLQTGQPLWEQRVALPKGRTEL---ER---LVDVDGDPVVDGGQVYAVSY-QGRVAALDLRSGRVLWKRDA-- 269 (377)
T ss_pred -CEEEEEEccCCCEeeeeccccCCCCCch---hh---hhccCCccEEECCEEEEEEc-CCEEEEEECCCCcEEEeecc--
Confidence 258889988764 76432212111100 00 00000123456888888753 4679999998764 76531
Q ss_pred CCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCcee
Q 043540 369 PEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKL 419 (437)
Q Consensus 369 p~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~ 419 (437)
+. ..+.+..+++||+.... + .+.+++.+.....|+.
T Consensus 270 ~~--------~~~p~~~~~~vyv~~~~----G---~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 270 SS--------YQGPAVDDNRLYVTDAD----G---VVVALDRRSGSELWKN 305 (377)
T ss_pred CC--------ccCceEeCCEEEEECCC----C---eEEEEECCCCcEEEcc
Confidence 11 11234568888887521 1 2334444444456654
No 61
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.70 E-value=0.033 Score=54.93 Aligned_cols=205 Identities=16% Similarity=0.123 Sum_probs=111.0
Q ss_pred EEEEEecCceEEEeccCCC--CeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCC--ceecCCCCC
Q 043540 141 WVYFSCKLKEWEAFDPIHH--RWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTN--TWSTGMTMN 216 (437)
Q Consensus 141 ~l~~~~~~~~~~~yDp~~~--~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~--~W~~~~~~~ 216 (437)
.+++......+.++|+.++ .|+.-...+.. .. ......+..++.+|+ |. ....++.+|+.++ .|+.-...+
T Consensus 147 ~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~-~~-~~~~sp~~~~~~v~~-~~--~~g~v~ald~~tG~~~W~~~~~~~ 221 (377)
T TIGR03300 147 LVVVRTNDGRLTALDAATGERLWTYSRVTPAL-TL-RGSASPVIADGGVLV-GF--AGGKLVALDLQTGQPLWEQRVALP 221 (377)
T ss_pred EEEEECCCCeEEEEEcCCCceeeEEccCCCce-ee-cCCCCCEEECCEEEE-EC--CCCEEEEEEccCCCEeeeeccccC
Confidence 3444444566889998876 47643221110 00 000122455666554 32 2246889999876 475422111
Q ss_pred CCc--------cceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCc--EEecCCCCcCCcCeeEEEECCEEEEEeccc
Q 043540 217 TPR--------CLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGT--WMPISSMHKARKMCSGVFMDGKFYVIGGIG 286 (437)
Q Consensus 217 ~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~g~lyv~GG~~ 286 (437)
... .....++.++.+|+... ...+..||+++++ |+.-. ....+.++.++++|+....
T Consensus 222 ~g~~~~~~~~~~~~~p~~~~~~vy~~~~-------~g~l~a~d~~tG~~~W~~~~-----~~~~~p~~~~~~vyv~~~~- 288 (377)
T TIGR03300 222 KGRTELERLVDVDGDPVVDGGQVYAVSY-------QGRVAALDLRSGRVLWKRDA-----SSYQGPAVDDNRLYVTDAD- 288 (377)
T ss_pred CCCCchhhhhccCCccEEECCEEEEEEc-------CCEEEEEECCCCcEEEeecc-----CCccCceEeCCEEEEECCC-
Confidence 111 11223455788888643 1468899998875 86531 1123345678999987532
Q ss_pred CCCCccCCeEEEEECCCC--ceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCc--E
Q 043540 287 EGSSAMLTDVEMYDLETG--KWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKL--W 362 (437)
Q Consensus 287 ~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~--W 362 (437)
..+.++|..++ .|+.-. +... .. ...+..++.||+.+ ....++.+|..+.+ |
T Consensus 289 -------G~l~~~d~~tG~~~W~~~~-~~~~-~~--------------ssp~i~g~~l~~~~-~~G~l~~~d~~tG~~~~ 344 (377)
T TIGR03300 289 -------GVVVALDRRSGSELWKNDE-LKYR-QL--------------TAPAVVGGYLVVGD-FEGYLHWLSREDGSFVA 344 (377)
T ss_pred -------CeEEEEECCCCcEEEcccc-ccCC-cc--------------ccCEEECCEEEEEe-CCCEEEEEECCCCCEEE
Confidence 24888998876 476421 1111 11 12345688888764 45679999987764 4
Q ss_pred EEccCCCCcccCCCcccEEEEEeCCEEEEEcC
Q 043540 363 RTLGRLPEQASSMNGWGLAFRACGDQLIVIGG 394 (437)
Q Consensus 363 ~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG 394 (437)
+.- ++... ...+.++.+++||+.+.
T Consensus 345 ~~~--~~~~~-----~~~sp~~~~~~l~v~~~ 369 (377)
T TIGR03300 345 RLK--TDGSG-----IASPPVVVGDGLLVQTR 369 (377)
T ss_pred EEE--cCCCc-----cccCCEEECCEEEEEeC
Confidence 321 11111 11233567888887653
No 62
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.67 E-value=0.0017 Score=63.06 Aligned_cols=123 Identities=16% Similarity=0.230 Sum_probs=84.5
Q ss_pred eCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEECCEEEEEeccCCCCCC------CceEEEEEC----
Q 043540 183 VGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKL------LKSAELYNS---- 252 (437)
Q Consensus 183 ~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~------~~~~~~yd~---- 252 (437)
.+++|++.+.. ....+||..|..-..+|.++.+.....++.++++||+.......... ...+..|++
T Consensus 75 ~gskIv~~d~~---~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~ 151 (342)
T PF07893_consen 75 HGSKIVAVDQS---GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDD 151 (342)
T ss_pred cCCeEEEEcCC---CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEecccccccc
Confidence 48899988644 34888999999999999988888878888889999999875332111 223334442
Q ss_pred ----CCCcEEecCCCCcCCc-------CeeEEEE-CCEEEE-EecccCCCCccCCeEEEEECCCCceEecCCCCCc
Q 043540 253 ----ITGTWMPISSMHKARK-------MCSGVFM-DGKFYV-IGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPA 315 (437)
Q Consensus 253 ----~t~~W~~~~~~~~~r~-------~~~~~~~-~g~lyv-~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~ 315 (437)
..-.|+.+|+.|..+. -.+-+++ +..|+| +-+.. ...+.||+++.+|+...+-.-+
T Consensus 152 ~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-------~GTysfDt~~~~W~~~GdW~LP 220 (342)
T PF07893_consen 152 PSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-------WGTYSFDTESHEWRKHGDWMLP 220 (342)
T ss_pred ccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc-------eEEEEEEcCCcceeeccceecC
Confidence 2235899988765443 2344556 667888 43321 2379999999999999864333
No 63
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.56 E-value=0.0034 Score=60.95 Aligned_cols=131 Identities=17% Similarity=0.179 Sum_probs=83.7
Q ss_pred ECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEECCEEEEEecccCCCCcc---CCeEEEE--EC
Q 043540 227 LGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAM---LTDVEMY--DL 301 (437)
Q Consensus 227 ~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~---~~~v~~y--d~ 301 (437)
.+.+|+.++.. ..+.+||.+|..=...|.|+.+.....++.++++||++.......... ..+++++ ++
T Consensus 75 ~gskIv~~d~~-------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~ 147 (342)
T PF07893_consen 75 HGSKIVAVDQS-------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRP 147 (342)
T ss_pred cCCeEEEEcCC-------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEecccc
Confidence 58899888553 347899999999988888887777777888899999998764111110 0144444 42
Q ss_pred --------CCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE-CCEEEE-EeCCCCeEEEEeCCCCcEEEccC--CC
Q 043540 302 --------ETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV-NNELYA-ADHEKEEVRKFDKGRKLWRTLGR--LP 369 (437)
Q Consensus 302 --------~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ly~-~gg~~~~v~~yd~~~~~W~~v~~--lp 369 (437)
..-.|+.+++.|........... ..+-+++ +..|++ +.+.....+.||.++.+|++++. ||
T Consensus 148 ~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~-------i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~GdW~LP 220 (342)
T PF07893_consen 148 PPDDPSPEESWSWRSLPPPPFVRDRRYSDYR-------ITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKHGDWMLP 220 (342)
T ss_pred ccccccCCCcceEEcCCCCCccccCCcccce-------EEEEEEecCCeEEEEecCCceEEEEEEcCCcceeeccceecC
Confidence 22367888775544332000000 1345556 567777 43222369999999999999984 55
Q ss_pred Cc
Q 043540 370 EQ 371 (437)
Q Consensus 370 ~~ 371 (437)
..
T Consensus 221 F~ 222 (342)
T PF07893_consen 221 FH 222 (342)
T ss_pred cC
Confidence 43
No 64
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.52 E-value=0.0096 Score=54.36 Aligned_cols=170 Identities=18% Similarity=0.198 Sum_probs=94.1
Q ss_pred EEEeccCCCCCCCceEEEEECCCCc--------EE---ecCCCCcCCcCeeEEEE--CCE--EEEEecccC---------
Q 043540 232 ILAGGCDPRGKLLKSAELYNSITGT--------WM---PISSMHKARKMCSGVFM--DGK--FYVIGGIGE--------- 287 (437)
Q Consensus 232 yv~GG~~~~~~~~~~~~~yd~~t~~--------W~---~~~~~~~~r~~~~~~~~--~g~--lyv~GG~~~--------- 287 (437)
++.||.+.+....+.+++....... .+ .+.+.|.+|++|++-++ .|| ..++||...
T Consensus 42 lIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTe 121 (337)
T PF03089_consen 42 LIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTE 121 (337)
T ss_pred EecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccchh
Confidence 4557877776666777776554332 11 23678999999987655 343 556677541
Q ss_pred CCCcc---CCeEEEEECCCCceEe--cCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCC-------CCeEEEE
Q 043540 288 GSSAM---LTDVEMYDLETGKWTQ--ITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHE-------KEEVRKF 355 (437)
Q Consensus 288 ~~~~~---~~~v~~yd~~~~~W~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~-------~~~v~~y 355 (437)
..+.. ...|+..|++-+..+. ++.+..+.+. |.+.+-++.+|++||. ...+++.
T Consensus 122 nWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SF--------------Hvslar~D~VYilGGHsl~sd~Rpp~l~rl 187 (337)
T PF03089_consen 122 NWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSF--------------HVSLARNDCVYILGGHSLESDSRPPRLYRL 187 (337)
T ss_pred hcceeccCCCeEEEEeccccccccccchhhcCCeEE--------------EEEEecCceEEEEccEEccCCCCCCcEEEE
Confidence 01111 1236677887776653 3456666666 7788889999999983 1223333
Q ss_pred eC---CCCcEEEccCCCCcccCCCcccEEEEE--eCCEEEEEcCCCCCCCCeeEEEeeecCC--------CCCCcee
Q 043540 356 DK---GRKLWRTLGRLPEQASSMNGWGLAFRA--CGDQLIVIGGPRDSGGGIVELNGWVPDE--------GPPHWKL 419 (437)
Q Consensus 356 d~---~~~~W~~v~~lp~~~~~~~~~~~a~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~d~--------~~~~W~~ 419 (437)
.. ...-......++.... ...|.+. -.+..+|+||+........+.+...+|. ++.+|+-
T Consensus 188 kVdLllGSP~vsC~vl~~glS----isSAIvt~~~~~e~iIlGGY~sdsQKRm~C~~V~Ldd~~I~ie~~E~P~Wt~ 260 (337)
T PF03089_consen 188 KVDLLLGSPAVSCTVLQGGLS----ISSAIVTQTGPHEYIILGGYQSDSQKRMECNTVSLDDDGIHIEEREPPEWTG 260 (337)
T ss_pred EEeecCCCceeEEEECCCCce----EeeeeEeecCCCceEEEecccccceeeeeeeEEEEeCCceEeccCCCCCCCC
Confidence 21 1112222222333222 1222222 2467888999875554444333333332 5567763
No 65
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.42 E-value=0.0064 Score=56.15 Aligned_cols=203 Identities=22% Similarity=0.190 Sum_probs=112.7
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecC
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPIS 261 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 261 (437)
++.||+.. .....++.+|+.++.-....... ..+++.. ++.+|+... ....++|+.+++++.+.
T Consensus 11 ~g~l~~~D--~~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~~~--------~~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 11 DGRLYWVD--IPGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVADS--------GGIAVVDPDTGKVTVLA 76 (246)
T ss_dssp TTEEEEEE--TTTTEEEEEETTTTEEEEEESSS----EEEEEEECTTSEEEEEET--------TCEEEEETTTTEEEEEE
T ss_pred CCEEEEEE--cCCCEEEEEECCCCeEEEEecCC----CceEEEEccCCEEEEEEc--------CceEEEecCCCcEEEEe
Confidence 56777763 34568999999988765432211 2344444 688888854 33466799999999887
Q ss_pred CCCcC---CcCe--eEEEECCEEEEEecccCCCCccC--CeEEEEECCCCceEecCC-CCCcccCCCCcccccccCCCCC
Q 043540 262 SMHKA---RKMC--SGVFMDGKFYVIGGIGEGSSAML--TDVEMYDLETGKWTQITD-MFPARIGSDGVSVISAAGEAPP 333 (437)
Q Consensus 262 ~~~~~---r~~~--~~~~~~g~lyv~GG~~~~~~~~~--~~v~~yd~~~~~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 333 (437)
..+.. .... .++--+|.||+..-.. ...... ..++++++. ++.+.+.. +..+ .
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~-~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p-----------------N 137 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGG-GGASGIDPGSVYRIDPD-GKVTVVADGLGFP-----------------N 137 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECC-BCTTCGGSEEEEEEETT-SEEEEEEEEESSE-----------------E
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCC-CccccccccceEEECCC-CeEEEEecCcccc-----------------c
Confidence 66421 2222 2333378999864322 111111 568999998 66655532 2111 2
Q ss_pred EEEEE-CC-EEEEEeCCCCeEEEEeCCCCc--EEE---ccCCCCcccCCCcccEEEEEeCCEEEEE--cCCCCCCCCeeE
Q 043540 334 LLAVV-NN-ELYAADHEKEEVRKFDKGRKL--WRT---LGRLPEQASSMNGWGLAFRACGDQLIVI--GGPRDSGGGIVE 404 (437)
Q Consensus 334 ~~~~~-~~-~ly~~gg~~~~v~~yd~~~~~--W~~---v~~lp~~~~~~~~~~~a~~~~~~~l~v~--GG~~~~~~~~~~ 404 (437)
+++.. ++ .||+.....+.|++|+..... +.. +..++...... =|+++ --+++|||. ++-
T Consensus 138 Gi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~p--DG~~v-D~~G~l~va~~~~~--------- 205 (246)
T PF08450_consen 138 GIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYP--DGLAV-DSDGNLWVADWGGG--------- 205 (246)
T ss_dssp EEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEE--EEEEE-BTTS-EEEEEETTT---------
T ss_pred ceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCC--CcceE-cCCCCEEEEEcCCC---------
Confidence 34443 34 689988888899999986433 332 22333322000 13332 236789997 322
Q ss_pred EEeeecCCCCCCceecCccCCCceEeeeEE
Q 043540 405 LNGWVPDEGPPHWKLLARQPMCGFVFNCTV 434 (437)
Q Consensus 405 ~~~~~~d~~~~~W~~l~~~p~~~~~~~~~v 434 (437)
.++++|+....-..+. +|. ....+|++
T Consensus 206 -~I~~~~p~G~~~~~i~-~p~-~~~t~~~f 232 (246)
T PF08450_consen 206 -RIVVFDPDGKLLREIE-LPV-PRPTNCAF 232 (246)
T ss_dssp -EEEEEETTSCEEEEEE--SS-SSEEEEEE
T ss_pred -EEEEECCCccEEEEEc-CCC-CCEEEEEE
Confidence 3677787755444443 442 24455555
No 66
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.06 E-value=0.036 Score=51.15 Aligned_cols=196 Identities=16% Similarity=0.080 Sum_probs=105.2
Q ss_pred EEEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEE-eCCEEEEEcCccCCceEEEEECCCCceecCCCCC---
Q 043540 141 WVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLA-VGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMN--- 216 (437)
Q Consensus 141 ~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~--- 216 (437)
++++......++.+|+.+++-..+.. +.+.. ..+. -++.+|+... ..+.++|+.+++++.+...+
T Consensus 14 l~~~D~~~~~i~~~~~~~~~~~~~~~-~~~~G------~~~~~~~g~l~v~~~----~~~~~~d~~~g~~~~~~~~~~~~ 82 (246)
T PF08450_consen 14 LYWVDIPGGRIYRVDPDTGEVEVIDL-PGPNG------MAFDRPDGRLYVADS----GGIAVVDPDTGKVTVLADLPDGG 82 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEES-SSEEE------EEEECTTSEEEEEET----TCEEEEETTTTEEEEEEEEETTC
T ss_pred EEEEEcCCCEEEEEECCCCeEEEEec-CCCce------EEEEccCCEEEEEEc----CceEEEecCCCcEEEEeeccCCC
Confidence 33444456778999999887654322 22111 1122 3677887642 34566799999998876542
Q ss_pred --CCccceeeEEECCEEEEEeccCCCCCCC--ceEEEEECCCCcEEecCCCCcCCcCeeEEEE-CC-EEEEEecccCCCC
Q 043540 217 --TPRCLFGSASLGEIAILAGGCDPRGKLL--KSAELYNSITGTWMPISSMHKARKMCSGVFM-DG-KFYVIGGIGEGSS 290 (437)
Q Consensus 217 --~~r~~~~~~~~~~~iyv~GG~~~~~~~~--~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~g-~lyv~GG~~~~~~ 290 (437)
..+.+-.++.-++.+|+..-........ ..++++++. ++.+.+..- .... -+.++- ++ .||+.--.
T Consensus 83 ~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~-~~~p-NGi~~s~dg~~lyv~ds~----- 154 (246)
T PF08450_consen 83 VPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG-LGFP-NGIAFSPDGKTLYVADSF----- 154 (246)
T ss_dssp SCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE-ESSE-EEEEEETTSSEEEEEETT-----
T ss_pred cccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC-cccc-cceEECCcchheeecccc-----
Confidence 2222233334467888864322211112 678999998 665554321 1111 223333 45 57775332
Q ss_pred ccCCeEEEEECCCCc--eEec---CCCCCcccCCCCcccccccCCCCCEEEE-ECCEEEEEeCCCCeEEEEeCCCCcEEE
Q 043540 291 AMLTDVEMYDLETGK--WTQI---TDMFPARIGSDGVSVISAAGEAPPLLAV-VNNELYAADHEKEEVRKFDKGRKLWRT 364 (437)
Q Consensus 291 ~~~~~v~~yd~~~~~--W~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~~~v~~yd~~~~~W~~ 364 (437)
...+++||+.... +... ..++..... +-++++ -+|.||+.......|.+||++-..-..
T Consensus 155 --~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~-------------pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~ 219 (246)
T PF08450_consen 155 --NGRIWRFDLDADGGELSNRRVFIDFPGGPGY-------------PDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLRE 219 (246)
T ss_dssp --TTEEEEEEEETTTCCEEEEEEEEE-SSSSCE-------------EEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEE
T ss_pred --cceeEEEeccccccceeeeeeEEEcCCCCcC-------------CCcceEcCCCCEEEEEcCCCEEEEECCCccEEEE
Confidence 2458888886433 3322 122222110 123444 479999998778899999999555555
Q ss_pred ccCCCCc
Q 043540 365 LGRLPEQ 371 (437)
Q Consensus 365 v~~lp~~ 371 (437)
+ .+|..
T Consensus 220 i-~~p~~ 225 (246)
T PF08450_consen 220 I-ELPVP 225 (246)
T ss_dssp E-E-SSS
T ss_pred E-cCCCC
Confidence 5 45533
No 67
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=96.94 E-value=0.41 Score=46.13 Aligned_cols=236 Identities=10% Similarity=0.091 Sum_probs=109.6
Q ss_pred CceEEEeccCC-CCeeeCCCCCCccccccCCceeEEe-CCEEEEEcCccCCceEEEEECC-CCceecCCCCCCCccceee
Q 043540 148 LKEWEAFDPIH-HRWMHLPPMNASDCFMCADKESLAV-GTELLVFGKEVHGNAIYRYNLL-TNTWSTGMTMNTPRCLFGS 224 (437)
Q Consensus 148 ~~~~~~yDp~~-~~W~~l~~~p~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~v~~yd~~-t~~W~~~~~~~~~r~~~~~ 224 (437)
...+..||..+ +++..+..++....... -.+.- +..||+.+. ....+..|+.. +++++.+...+.+..-..+
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~~~~~~~~~~---l~~spd~~~lyv~~~--~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i 85 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQVVDVPGQVQP---MVISPDKRHLYVGVR--PEFRVLSYRIADDGALTFAAESPLPGSPTHI 85 (330)
T ss_pred CCCEEEEEECCCCceeeeeEEecCCCCcc---EEECCCCCEEEEEEC--CCCcEEEEEECCCCceEEeeeecCCCCceEE
Confidence 45577777753 56665554433211111 01122 445777543 23567777765 4566654433322221222
Q ss_pred EEE--CCEEEEEeccCCCCCCCceEEEEECCCCc--EEecCCCCcCCcCeeEEEE-CC-EEEEEecccCCCCccCCeEEE
Q 043540 225 ASL--GEIAILAGGCDPRGKLLKSAELYNSITGT--WMPISSMHKARKMCSGVFM-DG-KFYVIGGIGEGSSAMLTDVEM 298 (437)
Q Consensus 225 ~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~r~~~~~~~~-~g-~lyv~GG~~~~~~~~~~~v~~ 298 (437)
+.. +..+|+..-. .+.+.+||..++. .+.+...+.....|.+++. ++ .+|+.. .. .+.+.+
T Consensus 86 ~~~~~g~~l~v~~~~------~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~-~~------~~~v~v 152 (330)
T PRK11028 86 STDHQGRFLFSASYN------ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPC-LK------EDRIRL 152 (330)
T ss_pred EECCCCCEEEEEEcC------CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEee-CC------CCEEEE
Confidence 222 3456766421 2567778776431 1222222222223444333 44 455543 22 246899
Q ss_pred EECCCC-ceEecC----CCCCcccCCCCcccccccCCCCCEEEEE-C-CEEEEEeCCCCeEEEEeCC--CCcEEEc---c
Q 043540 299 YDLETG-KWTQIT----DMFPARIGSDGVSVISAAGEAPPLLAVV-N-NELYAADHEKEEVRKFDKG--RKLWRTL---G 366 (437)
Q Consensus 299 yd~~~~-~W~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~ly~~gg~~~~v~~yd~~--~~~W~~v---~ 366 (437)
||+.+. ...... ..+.+ ..+..++.. + ..+|+.....+.|.+||.. +++.+.+ .
T Consensus 153 ~d~~~~g~l~~~~~~~~~~~~g--------------~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~ 218 (330)
T PRK11028 153 FTLSDDGHLVAQEPAEVTTVEG--------------AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLD 218 (330)
T ss_pred EEECCCCcccccCCCceecCCC--------------CCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEe
Confidence 998763 222111 11111 111233333 3 3677876657888888876 4455443 3
Q ss_pred CCCCcccCCCcccEEEE--EeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCceecCc
Q 043540 367 RLPEQASSMNGWGLAFR--ACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKLLAR 422 (437)
Q Consensus 367 ~lp~~~~~~~~~~~a~~--~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~ 422 (437)
.+|..... ..+...+. .-+..||+... ....+.+|.++..+..++.+..
T Consensus 219 ~~p~~~~~-~~~~~~i~~~pdg~~lyv~~~------~~~~I~v~~i~~~~~~~~~~~~ 269 (330)
T PRK11028 219 MMPADFSD-TRWAADIHITPDGRHLYACDR------TASLISVFSVSEDGSVLSFEGH 269 (330)
T ss_pred cCCCcCCC-CccceeEEECCCCCEEEEecC------CCCeEEEEEEeCCCCeEEEeEE
Confidence 34332111 11332232 22346777632 1224667777666655655543
No 68
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.85 E-value=0.05 Score=51.03 Aligned_cols=121 Identities=13% Similarity=0.277 Sum_probs=73.3
Q ss_pred EEEEeccCCCCC-CCceEEEEECCCCcEEecCCCCcCCcCeeEEEE-CCEEEEEecccCCCCccCCeEEEEECCCCceEe
Q 043540 231 AILAGGCDPRGK-LLKSAELYNSITGTWMPISSMHKARKMCSGVFM-DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQ 308 (437)
Q Consensus 231 iyv~GG~~~~~~-~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~ 308 (437)
|||-|-++..+. ....+-.||..+.+|..+..--.. .-..+... +++||+.|-.. -+......+..||.++.+|+.
T Consensus 1 v~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~i~G-~V~~l~~~~~~~Llv~G~ft-~~~~~~~~la~yd~~~~~w~~ 78 (281)
T PF12768_consen 1 VYVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNGISG-TVTDLQWASNNQLLVGGNFT-LNGTNSSNLATYDFKNQTWSS 78 (281)
T ss_pred CEEeeecCCCCCcCCCEEEEEECCCCEeecCCCCceE-EEEEEEEecCCEEEEEEeeE-ECCCCceeEEEEecCCCeeee
Confidence 355555654443 357888999999999988654221 12233334 78888888766 223245568899999999998
Q ss_pred cCCCC-CcccCCCCcccccccCCCCCEEEE---ECCEEEEEeCC---CCeEEEEeCCCCcEEEccC
Q 043540 309 ITDMF-PARIGSDGVSVISAAGEAPPLLAV---VNNELYAADHE---KEEVRKFDKGRKLWRTLGR 367 (437)
Q Consensus 309 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ly~~gg~---~~~v~~yd~~~~~W~~v~~ 367 (437)
++.-. ....+. -..... -...+++.|.. ...+..| ...+|..+..
T Consensus 79 ~~~~~s~~ipgp------------v~a~~~~~~d~~~~~~aG~~~~g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 79 LGGGSSNSIPGP------------VTALTFISNDGSNFWVAGRSANGSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred cCCcccccCCCc------------EEEEEeeccCCceEEEeceecCCCceEEEE--cCCceEeccc
Confidence 87622 111120 011222 13467777642 3357777 4557998875
No 69
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=96.77 E-value=0.24 Score=45.53 Aligned_cols=74 Identities=14% Similarity=0.167 Sum_probs=55.7
Q ss_pred CCCCCCccceeeEEE---C-CEEEEEeccCC-------------CCCCCceEEEEECCCCcEE--ecCCCCcCCcCeeEE
Q 043540 213 MTMNTPRCLFGSASL---G-EIAILAGGCDP-------------RGKLLKSAELYNSITGTWM--PISSMHKARKMCSGV 273 (437)
Q Consensus 213 ~~~~~~r~~~~~~~~---~-~~iyv~GG~~~-------------~~~~~~~~~~yd~~t~~W~--~~~~~~~~r~~~~~~ 273 (437)
.++|.+|++|++-++ + .-..++||..- --++...++..|++-+-.+ .+|.+......|-+.
T Consensus 82 GdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvsl 161 (337)
T PF03089_consen 82 GDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSL 161 (337)
T ss_pred CCCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEE
Confidence 579999999988776 2 34678888531 1123456788888887764 457777888889899
Q ss_pred EECCEEEEEeccc
Q 043540 274 FMDGKFYVIGGIG 286 (437)
Q Consensus 274 ~~~g~lyv~GG~~ 286 (437)
.-++.+|++||..
T Consensus 162 ar~D~VYilGGHs 174 (337)
T PF03089_consen 162 ARNDCVYILGGHS 174 (337)
T ss_pred ecCceEEEEccEE
Confidence 9999999999986
No 70
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.63 E-value=0.11 Score=47.86 Aligned_cols=185 Identities=16% Similarity=0.145 Sum_probs=111.5
Q ss_pred eCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCC
Q 043540 183 VGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISS 262 (437)
Q Consensus 183 ~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 262 (437)
.++.||.--|....+.+..||+.|++-....++|..-..-+++.++++||..-= ....+.+||+.+ .+.+..
T Consensus 54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTW------k~~~~f~yd~~t--l~~~~~ 125 (264)
T PF05096_consen 54 DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTW------KEGTGFVYDPNT--LKKIGT 125 (264)
T ss_dssp ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEES------SSSEEEEEETTT--TEEEEE
T ss_pred CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEe------cCCeEEEEcccc--ceEEEE
Confidence 578888876665567899999999987766667765566689999999998832 136789999975 466665
Q ss_pred CCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEE
Q 043540 263 MHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNEL 342 (437)
Q Consensus 263 ~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 342 (437)
.+.+..+.+.+.-+..|++.-|.. .+...||++-+ ....+.....+ .|. ..---+-.++|.|
T Consensus 126 ~~y~~EGWGLt~dg~~Li~SDGS~--------~L~~~dP~~f~--~~~~i~V~~~g------~pv--~~LNELE~i~G~I 187 (264)
T PF05096_consen 126 FPYPGEGWGLTSDGKRLIMSDGSS--------RLYFLDPETFK--EVRTIQVTDNG------RPV--SNLNELEYINGKI 187 (264)
T ss_dssp EE-SSS--EEEECSSCEEEE-SSS--------EEEEE-TTT-S--EEEEEE-EETT------EE-----EEEEEEETTEE
T ss_pred EecCCcceEEEcCCCEEEEECCcc--------ceEEECCcccc--eEEEEEEEECC------EEC--CCcEeEEEEcCEE
Confidence 665566777777777788877754 58888887532 22111111111 000 0000134468888
Q ss_pred EEEeCCCCeEEEEeCCCCc---EEEccCCCC------cc----cCCCcccEEEEEeCCEEEEEcCC
Q 043540 343 YAADHEKEEVRKFDKGRKL---WRTLGRLPE------QA----SSMNGWGLAFRACGDQLIVIGGP 395 (437)
Q Consensus 343 y~~gg~~~~v~~yd~~~~~---W~~v~~lp~------~~----~~~~~~~~a~~~~~~~l~v~GG~ 395 (437)
|+==...+.|.+.||+++. |..+..+-. .+ ...| |.|.-.-.+++||.|-.
T Consensus 188 yANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLN--GIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 188 YANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLN--GIAYDPETDRLFVTGKL 251 (264)
T ss_dssp EEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EE--EEEEETTTTEEEEEETT
T ss_pred EEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeE--eEeEeCCCCEEEEEeCC
Confidence 8765678899999999987 444432211 11 1111 45555567899999854
No 71
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=96.39 E-value=1.1 Score=46.14 Aligned_cols=46 Identities=13% Similarity=0.289 Sum_probs=40.1
Q ss_pred CCCCCCCCCHHHHHHHhhccCccchhhHHHHhHHHHHhhcCcchHH
Q 043540 85 SNSLIPELGRDITINCLLRCSRSDYGAIASLNRAFRSLIQSGELYR 130 (437)
Q Consensus 85 ~~~~~~~LP~dl~~~~L~rlP~~~~~~~~~V~k~w~sli~s~~~y~ 130 (437)
....+..||.++...+|..|+...+..++.||+.|+.++.+.....
T Consensus 104 ~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 104 QRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred ccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence 4567788999999999999999999999999999999987666553
No 72
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.19 E-value=1.1 Score=41.83 Aligned_cols=177 Identities=15% Similarity=0.013 Sum_probs=84.5
Q ss_pred cCceEEEeccCCCCeeeCCCCCCccccccCCceeEEe-CCEEEEEcCccCCceEEEEECCCCceec-CCCCCCCccceee
Q 043540 147 KLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAV-GTELLVFGKEVHGNAIYRYNLLTNTWST-GMTMNTPRCLFGS 224 (437)
Q Consensus 147 ~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~v~~yd~~t~~W~~-~~~~~~~r~~~~~ 224 (437)
....+..||+.+++-...-...... .. ....- +..+|+.++. .+.+.+||..+++... ++....+ ...
T Consensus 9 ~d~~v~~~d~~t~~~~~~~~~~~~~--~~---l~~~~dg~~l~~~~~~--~~~v~~~d~~~~~~~~~~~~~~~~---~~~ 78 (300)
T TIGR03866 9 KDNTISVIDTATLEVTRTFPVGQRP--RG---ITLSKDGKLLYVCASD--SDTIQVIDLATGEVIGTLPSGPDP---ELF 78 (300)
T ss_pred CCCEEEEEECCCCceEEEEECCCCC--Cc---eEECCCCCEEEEEECC--CCeEEEEECCCCcEEEeccCCCCc---cEE
Confidence 3456778888776543221111110 00 11222 3456776542 3568899998876643 2221111 122
Q ss_pred EEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEE-ECCEEEEEecccCCCCccCCeEEEEEC
Q 043540 225 ASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVF-MDGKFYVIGGIGEGSSAMLTDVEMYDL 301 (437)
Q Consensus 225 ~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~g~lyv~GG~~~~~~~~~~~v~~yd~ 301 (437)
+.. ++.+|+.++.+ ..+.+||..+.+- +..++.......+++ -+|++++++... ...+..||.
T Consensus 79 ~~~~~g~~l~~~~~~~------~~l~~~d~~~~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~~------~~~~~~~d~ 144 (300)
T TIGR03866 79 ALHPNGKILYIANEDD------NLVTVIDIETRKV--LAEIPVGVEPEGMAVSPDGKIVVNTSET------TNMAHFIDT 144 (300)
T ss_pred EECCCCCEEEEEcCCC------CeEEEEECCCCeE--EeEeeCCCCcceEEECCCCCEEEEEecC------CCeEEEEeC
Confidence 222 34566665422 4688899987642 222221111122332 367777765432 123566787
Q ss_pred CCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEE-EEeCCCCeEEEEeCCCCcE
Q 043540 302 ETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELY-AADHEKEEVRKFDKGRKLW 362 (437)
Q Consensus 302 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly-~~gg~~~~v~~yd~~~~~W 362 (437)
.+.+-....... .+.. .....-+++.+ +.+...+.+..||.++.+.
T Consensus 145 ~~~~~~~~~~~~-~~~~--------------~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 145 KTYEIVDNVLVD-QRPR--------------FAEFTADGKELWVSSEIGGTVSVIDVATRKV 191 (300)
T ss_pred CCCeEEEEEEcC-CCcc--------------EEEECCCCCEEEEEcCCCCEEEEEEcCccee
Confidence 765432211100 0111 11223355544 4433467899999987653
No 73
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=96.13 E-value=0.68 Score=45.10 Aligned_cols=238 Identities=16% Similarity=0.135 Sum_probs=119.8
Q ss_pred EEEeccCCCCeeeCCCCCCccccccCCceeEE--eCCEEEEEcCcc-CCceEEEEE--CCCCceecCCCCCCCccceeeE
Q 043540 151 WEAFDPIHHRWMHLPPMNASDCFMCADKESLA--VGTELLVFGKEV-HGNAIYRYN--LLTNTWSTGMTMNTPRCLFGSA 225 (437)
Q Consensus 151 ~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~lyv~GG~~-~~~~v~~yd--~~t~~W~~~~~~~~~r~~~~~~ 225 (437)
.+.||..+.++..+.......... .++. -+..||+..... ....+..|. ..+++.+.+...+......+..
T Consensus 17 ~~~~d~~~g~l~~~~~~~~~~~Ps----~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i 92 (345)
T PF10282_consen 17 VFRFDEETGTLTLVQTVAEGENPS----WLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI 92 (345)
T ss_dssp EEEEETTTTEEEEEEEEEESSSEC----CEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred EEEEcCCCCCceEeeeecCCCCCc----eEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence 466788999887665422111110 1122 367888886432 344555554 4446787776555333333333
Q ss_pred EE---CCEEEEEeccCCCCCCCceEEEEECCCC-cEEecC-------CCC----cC-CcCeeEEEE-CC-EEEEEecccC
Q 043540 226 SL---GEIAILAGGCDPRGKLLKSAELYNSITG-TWMPIS-------SMH----KA-RKMCSGVFM-DG-KFYVIGGIGE 287 (437)
Q Consensus 226 ~~---~~~iyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~-------~~~----~~-r~~~~~~~~-~g-~lyv~GG~~~ 287 (437)
.+ +..||++- +. ...+.+|+...+ +=.... .-| .. -..|.+.+. +| .+|+.. ..
T Consensus 93 ~~~~~g~~l~van-y~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d-lG- 164 (345)
T PF10282_consen 93 AVDPDGRFLYVAN-YG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD-LG- 164 (345)
T ss_dssp EECTTSSEEEEEE-TT-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE-TT-
T ss_pred EEecCCCEEEEEE-cc-----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe-cC-
Confidence 33 45666652 21 256778877664 222211 011 11 123444444 44 466652 22
Q ss_pred CCCccCCeEEEEECCCCc--eEecCCCCCcccCCCCcccccccCCCCCEEEEE-C-CEEEEEeCCCCeEEEEeCC--CCc
Q 043540 288 GSSAMLTDVEMYDLETGK--WTQITDMFPARIGSDGVSVISAAGEAPPLLAVV-N-NELYAADHEKEEVRKFDKG--RKL 361 (437)
Q Consensus 288 ~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~ly~~gg~~~~v~~yd~~--~~~ 361 (437)
.+.+..|+..... .+....+..+... .|..++.. + ..+|++....+.|.+|+.. +..
T Consensus 165 -----~D~v~~~~~~~~~~~l~~~~~~~~~~G~------------GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~ 227 (345)
T PF10282_consen 165 -----ADRVYVYDIDDDTGKLTPVDSIKVPPGS------------GPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGS 227 (345)
T ss_dssp -----TTEEEEEEE-TTS-TEEEEEEEECSTTS------------SEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred -----CCEEEEEEEeCCCceEEEeeccccccCC------------CCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCc
Confidence 3468888887665 6553322111111 11223333 3 4799998777877777766 666
Q ss_pred EEEcc---CCCCcccCCCcccEEEEEe--CCEEEEEcCCCCCCCCeeEEEeeecCCCCCCceecCccC
Q 043540 362 WRTLG---RLPEQASSMNGWGLAFRAC--GDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKLLARQP 424 (437)
Q Consensus 362 W~~v~---~lp~~~~~~~~~~~a~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p 424 (437)
++.+. .+|...... .+.+.++.. +..||+.... ...+.++..|..+.+-+.+...|
T Consensus 228 ~~~~~~~~~~~~~~~~~-~~~~~i~ispdg~~lyvsnr~------~~sI~vf~~d~~~g~l~~~~~~~ 288 (345)
T PF10282_consen 228 LTEIQTISTLPEGFTGE-NAPAEIAISPDGRFLYVSNRG------SNSISVFDLDPATGTLTLVQTVP 288 (345)
T ss_dssp EEEEEEEESCETTSCSS-SSEEEEEE-TTSSEEEEEECT------TTEEEEEEECTTTTTEEEEEEEE
T ss_pred eeEEEEeeecccccccc-CCceeEEEecCCCEEEEEecc------CCEEEEEEEecCCCceEEEEEEe
Confidence 66553 444422211 123344343 5578887522 23566777777766666664443
No 74
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.71 E-value=1.6 Score=41.49 Aligned_cols=216 Identities=17% Similarity=0.243 Sum_probs=96.3
Q ss_pred CCCeeeCCCCCCcc-ccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCceecCC-CCCCCccceeeEEE-CCEEEEE
Q 043540 158 HHRWMHLPPMNASD-CFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGM-TMNTPRCLFGSASL-GEIAILA 234 (437)
Q Consensus 158 ~~~W~~l~~~p~~~-~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~-~~~~~r~~~~~~~~-~~~iyv~ 234 (437)
-.+|..+..-.... .++. ..+...++..|+.|.. ..++.-.-.-.+|++++ +.+.|-..+....+ ++.++++
T Consensus 46 G~tW~~~~~~~~~~~~~~l--~~I~f~~~~g~ivG~~---g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~ 120 (302)
T PF14870_consen 46 GKTWQPVSLDLDNPFDYHL--NSISFDGNEGWIVGEP---GLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELA 120 (302)
T ss_dssp TSS-EE-----S-----EE--EEEEEETTEEEEEEET---TEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEE
T ss_pred CccccccccCCCccceeeE--EEEEecCCceEEEcCC---ceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEE
Confidence 35788765322221 1111 1234457888988732 23454444567999986 33444444555554 4567776
Q ss_pred eccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE-CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCC
Q 043540 235 GGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM-DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMF 313 (437)
Q Consensus 235 GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~ 313 (437)
|.. ..++.=.=.-.+|+.+..-... ....+... +|++.+++... +-....|+....|+......
T Consensus 121 ~~~-------G~iy~T~DgG~tW~~~~~~~~g-s~~~~~r~~dG~~vavs~~G-------~~~~s~~~G~~~w~~~~r~~ 185 (302)
T PF14870_consen 121 GDR-------GAIYRTTDGGKTWQAVVSETSG-SINDITRSSDGRYVAVSSRG-------NFYSSWDPGQTTWQPHNRNS 185 (302)
T ss_dssp ETT---------EEEESSTTSSEEEEE-S-----EEEEEE-TTS-EEEEETTS-------SEEEEE-TT-SS-EEEE--S
T ss_pred cCC-------CcEEEeCCCCCCeeEcccCCcc-eeEeEEECCCCcEEEEECcc-------cEEEEecCCCccceEEccCc
Confidence 532 2233322234579987543332 22223333 66766665433 23456788888999887655
Q ss_pred CcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEe--CCCCcEEEccCCCCcccCCCcccEEEEEe--CCEE
Q 043540 314 PARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFD--KGRKLWRTLGRLPEQASSMNGWGLAFRAC--GDQL 389 (437)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd--~~~~~W~~v~~lp~~~~~~~~~~~a~~~~--~~~l 389 (437)
..|.. .....-++.|+++. ....+..=+ ....+|.+.. .|... .+++.--++. ++.+
T Consensus 186 ~~riq--------------~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~-~~~~~---~~~~~ld~a~~~~~~~ 246 (302)
T PF14870_consen 186 SRRIQ--------------SMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPI-IPIKT---NGYGILDLAYRPPNEI 246 (302)
T ss_dssp SS-EE--------------EEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B--TTSS-----S-EEEEEESSSS-E
T ss_pred cceeh--------------hceecCCCCEEEEe-CCcEEEEccCCCCcccccccc-CCccc---CceeeEEEEecCCCCE
Confidence 54443 11223467888876 555566555 3456788732 33322 2355322232 4789
Q ss_pred EEEcCCCCCCCCeeEEEeeecCCCCCCceecC
Q 043540 390 IVIGGPRDSGGGIVELNGWVPDEGPPHWKLLA 421 (437)
Q Consensus 390 ~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~ 421 (437)
++.||.. .++.-.....+|++..
T Consensus 247 wa~gg~G---------~l~~S~DgGktW~~~~ 269 (302)
T PF14870_consen 247 WAVGGSG---------TLLVSTDGGKTWQKDR 269 (302)
T ss_dssp EEEESTT----------EEEESSTTSS-EE-G
T ss_pred EEEeCCc---------cEEEeCCCCccceECc
Confidence 9999854 2455556788999875
No 75
>PRK04792 tolB translocation protein TolB; Provisional
Probab=95.61 E-value=2.4 Score=42.94 Aligned_cols=146 Identities=13% Similarity=0.031 Sum_probs=80.6
Q ss_pred CceEEEEECCCCceecCCCCCCCccceeeEEE-CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEE
Q 043540 196 GNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL-GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVF 274 (437)
Q Consensus 196 ~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~ 274 (437)
...++++|+.+++-+.+...+..... ...+- +..|++....++ ...++++|..+++.+.+..-... .......
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g~~~~-~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~~~~-~~~p~wS 314 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPGINGA-PRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRHRAI-DTEPSWH 314 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCCCcCC-eeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccCCCC-ccceEEC
Confidence 45799999998877666554322111 11222 345665543322 25789999999988877543211 1111222
Q ss_pred ECCE-EEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECC-EEEEEeCC--CC
Q 043540 275 MDGK-FYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNN-ELYAADHE--KE 350 (437)
Q Consensus 275 ~~g~-lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ly~~gg~--~~ 350 (437)
-||+ |++..... ....++.+|+.+++++.+..-. .... .....-+| .|++.... ..
T Consensus 315 pDG~~I~f~s~~~-----g~~~Iy~~dl~~g~~~~Lt~~g-~~~~--------------~~~~SpDG~~l~~~~~~~g~~ 374 (448)
T PRK04792 315 PDGKSLIFTSERG-----GKPQIYRVNLASGKVSRLTFEG-EQNL--------------GGSITPDGRSMIMVNRTNGKF 374 (448)
T ss_pred CCCCEEEEEECCC-----CCceEEEEECCCCCEEEEecCC-CCCc--------------CeeECCCCCEEEEEEecCCce
Confidence 3554 44443221 1246899999999888774211 1111 11122244 45554322 34
Q ss_pred eEEEEeCCCCcEEEccC
Q 043540 351 EVRKFDKGRKLWRTLGR 367 (437)
Q Consensus 351 ~v~~yd~~~~~W~~v~~ 367 (437)
.|+.+|+.++..+.+..
T Consensus 375 ~I~~~dl~~g~~~~lt~ 391 (448)
T PRK04792 375 NIARQDLETGAMQVLTS 391 (448)
T ss_pred EEEEEECCCCCeEEccC
Confidence 68899999988877653
No 76
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.57 E-value=0.3 Score=47.66 Aligned_cols=138 Identities=16% Similarity=0.159 Sum_probs=84.1
Q ss_pred CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcC--eeEEEECCE-EEEEecccCCCCccCCeEEEEECCCC
Q 043540 228 GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKM--CSGVFMDGK-FYVIGGIGEGSSAMLTDVEMYDLETG 304 (437)
Q Consensus 228 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~--~~~~~~~g~-lyv~GG~~~~~~~~~~~v~~yd~~~~ 304 (437)
.-.+.+++|.++. -.++..|-++|. .+.++...+.. .+...-+|+ ..+.+|.. .-++.||+++.
T Consensus 224 ~~plllvaG~d~~----lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rr-------ky~ysyDle~a 290 (514)
T KOG2055|consen 224 TAPLLLVAGLDGT----LRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRR-------KYLYSYDLETA 290 (514)
T ss_pred CCceEEEecCCCc----EEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEecccc-------eEEEEeecccc
Confidence 3467788887643 455666777775 55555443332 222233666 56666654 34889999999
Q ss_pred ceEecCCCCCcc--cCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCcEEEccCCCCcccCCCcccEEE
Q 043540 305 KWTQITDMFPAR--IGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAF 382 (437)
Q Consensus 305 ~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~ 382 (437)
+-+++.++...- +-. ..-+..++.+.++-|..+-|+.....|++|..--.++.... ..++
T Consensus 291 k~~k~~~~~g~e~~~~e-------------~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~-----~~~f 352 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSME-------------RFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVS-----DFTF 352 (514)
T ss_pred ccccccCCCCcccchhh-------------eeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEe-----eEEE
Confidence 998887543221 110 12345566666776777888999889998865444444333 3455
Q ss_pred EEeCCEEEEEcCCC
Q 043540 383 RACGDQLIVIGGPR 396 (437)
Q Consensus 383 ~~~~~~l~v~GG~~ 396 (437)
...+.+|++.||..
T Consensus 353 sSdsk~l~~~~~~G 366 (514)
T KOG2055|consen 353 SSDSKELLASGGTG 366 (514)
T ss_pred ecCCcEEEEEcCCc
Confidence 55556788888753
No 77
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.56 E-value=0.23 Score=45.79 Aligned_cols=96 Identities=27% Similarity=0.483 Sum_probs=69.3
Q ss_pred ECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEE
Q 043540 275 MDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRK 354 (437)
Q Consensus 275 ~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~ 354 (437)
.+|.||.--|..+ .+.+..||+.+++-....+++....+ -+++.++++||.+-...+..++
T Consensus 54 ~~g~LyESTG~yG-----~S~l~~~d~~tg~~~~~~~l~~~~Fg--------------EGit~~~d~l~qLTWk~~~~f~ 114 (264)
T PF05096_consen 54 DDGTLYESTGLYG-----QSSLRKVDLETGKVLQSVPLPPRYFG--------------EGITILGDKLYQLTWKEGTGFV 114 (264)
T ss_dssp ETTEEEEEECSTT-----EEEEEEEETTTSSEEEEEE-TTT--E--------------EEEEEETTEEEEEESSSSEEEE
T ss_pred CCCEEEEeCCCCC-----cEEEEEEECCCCcEEEEEECCccccc--------------eeEEEECCEEEEEEecCCeEEE
Confidence 5789999877641 24688999999988777777777666 6799999999999999999999
Q ss_pred EeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCCC
Q 043540 355 FDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPR 396 (437)
Q Consensus 355 yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~ 396 (437)
||+.+ .+.++..+.+ ..|||.+ .-++.|++--|.+
T Consensus 115 yd~~t--l~~~~~~~y~---~EGWGLt--~dg~~Li~SDGS~ 149 (264)
T PF05096_consen 115 YDPNT--LKKIGTFPYP---GEGWGLT--SDGKRLIMSDGSS 149 (264)
T ss_dssp EETTT--TEEEEEEE-S---SS--EEE--ECSSCEEEE-SSS
T ss_pred Ecccc--ceEEEEEecC---CcceEEE--cCCCEEEEECCcc
Confidence 99976 5666655443 3568866 5667888887754
No 78
>smart00284 OLF Olfactomedin-like domains.
Probab=95.55 E-value=1 Score=41.44 Aligned_cols=172 Identities=18% Similarity=0.133 Sum_probs=93.1
Q ss_pred CCEEEEEeccCCCCCCCceEEEEECC----CCcEEecCCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCC
Q 043540 228 GEIAILAGGCDPRGKLLKSAELYNSI----TGTWMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLET 303 (437)
Q Consensus 228 ~~~iyv~GG~~~~~~~~~~~~~yd~~----t~~W~~~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~ 303 (437)
++++|++.+... ....+..|... .+.+.+.-.+|.+-.+.+.++++|.||.--.. ...+..||+.+
T Consensus 34 ~~~~wv~~~~~~---~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~~-------s~~iiKydL~t 103 (255)
T smart00284 34 KSLYWYMPLNTR---VLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKFN-------SHDICRFDLTT 103 (255)
T ss_pred CceEEEEccccC---CCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEecC-------CccEEEEECCC
Confidence 478888866531 13556666432 33343333566667788889999999995332 24699999999
Q ss_pred CceEecCCCCCcccCCCCcccccc-cCC-CCCEEEEECCEEEEE---eCCCC--eEEEEeCCCC----cEEEccCCCCcc
Q 043540 304 GKWTQITDMFPARIGSDGVSVISA-AGE-APPLLAVVNNELYAA---DHEKE--EVRKFDKGRK----LWRTLGRLPEQA 372 (437)
Q Consensus 304 ~~W~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~ly~~---gg~~~--~v~~yd~~~~----~W~~v~~lp~~~ 372 (437)
++-.....+|...... ..|- .++ ..--+++-.+-|+++ ....+ .|-+.|+.+- +|.. ..+...
T Consensus 104 ~~v~~~~~Lp~a~y~~----~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T--~~~k~s 177 (255)
T smart00284 104 ETYQKEPLLNGAGYNN----RFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWIT--TYNKRS 177 (255)
T ss_pred CcEEEEEecCcccccc----ccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEc--CCCccc
Confidence 9875444444321110 0000 001 112355666677776 22222 3457888764 4655 333333
Q ss_pred cCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCceecCccCCC
Q 043540 373 SSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKLLARQPMC 426 (437)
Q Consensus 373 ~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~ 426 (437)
.+-|+++| |.||++-... .. .+.-.+.||..+.+= ....+|+.
T Consensus 178 -----a~naFmvC-GvLY~~~s~~---~~-~~~I~yayDt~t~~~-~~~~i~f~ 220 (255)
T smart00284 178 -----ASNAFMIC-GILYVTRSLG---SK-GEKVFYAYDTNTGKE-GHLDIPFE 220 (255)
T ss_pred -----ccccEEEe-eEEEEEccCC---CC-CcEEEEEEECCCCcc-ceeeeeec
Confidence 25566555 7899985321 11 122255677766542 22345543
No 79
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=95.53 E-value=1.3 Score=39.22 Aligned_cols=151 Identities=13% Similarity=0.045 Sum_probs=76.9
Q ss_pred eeEEECCEEEEEeccCCCCCCCceEEEEECCCCc--EEecCCC-C-cCCcCeeEEEE--CCEEEEEecccCCCCccCCeE
Q 043540 223 GSASLGEIAILAGGCDPRGKLLKSAELYNSITGT--WMPISSM-H-KARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDV 296 (437)
Q Consensus 223 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~-~-~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v 296 (437)
+++...+++|++-| ..+++++..... -+.+... | .+..--++... +|++|++-|.. .
T Consensus 11 A~~~~~g~~y~FkG--------~~~w~~~~~~~~~~p~~I~~~w~~~p~~IDAa~~~~~~~~~yfFkg~~---------y 73 (194)
T cd00094 11 AVTTLRGELYFFKG--------RYFWRLSPGKPPGSPFLISSFWPSLPSPVDAAFERPDTGKIYFFKGDK---------Y 73 (194)
T ss_pred eEEEeCCEEEEEeC--------CEEEEEeCCCCCCCCeEhhhhCCCCCCCccEEEEECCCCEEEEECCCE---------E
Confidence 34455689999977 456677654211 1122111 1 11112223333 38999997754 7
Q ss_pred EEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE--CCEEEEEeCCCCeEEEEeCCCCcEEE-----c----
Q 043540 297 EMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV--NNELYAADHEKEEVRKFDKGRKLWRT-----L---- 365 (437)
Q Consensus 297 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ly~~gg~~~~v~~yd~~~~~W~~-----v---- 365 (437)
+.||..+..+..-..+.. ... |......-++... ++++|++. .+..++||..+++... +
T Consensus 74 w~~~~~~~~~~~Pk~i~~-~~~-------~~~~~~iDAA~~~~~~~~~yfFk--g~~y~ry~~~~~~v~~~yP~~i~~~w 143 (194)
T cd00094 74 WVYTGKNLEPGYPKPISD-LGF-------PPTVKQIDAALRWPDNGKTYFFK--GDKYWRYDEKTQKMDPGYPKLIETDF 143 (194)
T ss_pred EEEcCcccccCCCcchhh-cCC-------CCCCCCccEEEEEcCCCEEEEEe--CCEEEEEeCCCccccCCCCcchhhcC
Confidence 888866522211001111 000 0000000123333 68999995 4678999986654321 1
Q ss_pred cCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCC
Q 043540 366 GRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPH 416 (437)
Q Consensus 366 ~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~ 416 (437)
..+|.. ..+|+...++++|++-|.. .|+||..+.+
T Consensus 144 ~g~p~~------idaa~~~~~~~~yfF~g~~----------y~~~d~~~~~ 178 (194)
T cd00094 144 PGVPDK------VDAAFRWLDGYYYFFKGDQ----------YWRFDPRSKE 178 (194)
T ss_pred CCcCCC------cceeEEeCCCcEEEEECCE----------EEEEeCccce
Confidence 112221 1245544458999998754 8889887665
No 80
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.51 E-value=3.6 Score=42.55 Aligned_cols=209 Identities=13% Similarity=0.098 Sum_probs=106.6
Q ss_pred cEEEEEecCceEEEeccCCC--CeeeCCCCCCccc----cccCCceeEEeCCEEEEEcCccCCceEEEEECCCCc--eec
Q 043540 140 HWVYFSCKLKEWEAFDPIHH--RWMHLPPMNASDC----FMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNT--WST 211 (437)
Q Consensus 140 ~~l~~~~~~~~~~~yDp~~~--~W~~l~~~p~~~~----~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~--W~~ 211 (437)
..+|+......+.++|..++ .|+.-...+.... ........+..+++||+.. ....++.+|..|++ |+.
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t---~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT---LDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEc---CCCEEEEEECCCCCEEeec
Confidence 34566555567889998876 5875433321110 0011223355677888743 23478999998875 764
Q ss_pred CC-CCCCC-ccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCc--EEecCCCCc----------------------
Q 043540 212 GM-TMNTP-RCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGT--WMPISSMHK---------------------- 265 (437)
Q Consensus 212 ~~-~~~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~---------------------- 265 (437)
-. ..... ....+-++.++.||+.....+. .....+..||.+|++ |+.-...+.
T Consensus 147 ~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~-~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~ 225 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKGKVITGISGGEF-GVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG 225 (527)
T ss_pred ccccccccccccCCcEEECCEEEEeeccccc-CCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence 32 22111 1112335568888775322111 123678899999987 763321111
Q ss_pred ---CCcC---eeEEEEC---CEEEEEecc----c----CCCCccCCeEEEEECCCCc--eEecCCCCCcccCCCCccccc
Q 043540 266 ---ARKM---CSGVFMD---GKFYVIGGI----G----EGSSAMLTDVEMYDLETGK--WTQITDMFPARIGSDGVSVIS 326 (437)
Q Consensus 266 ---~r~~---~~~~~~~---g~lyv~GG~----~----~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~ 326 (437)
.+.. -....+| +.||+--|. . .+.+.+.+++.+.|++|++ |.............
T Consensus 226 ~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d------- 298 (527)
T TIGR03075 226 DAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYD------- 298 (527)
T ss_pred CccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCcccc-------
Confidence 0100 0112444 567775543 1 1123456789999999985 76443222221110
Q ss_pred ccCCCCCEEEE--ECCE---EEEEeCCCCeEEEEeCCCCc
Q 043540 327 AAGEAPPLLAV--VNNE---LYAADHEKEEVRKFDKGRKL 361 (437)
Q Consensus 327 ~~~~~~~~~~~--~~~~---ly~~gg~~~~v~~yd~~~~~ 361 (437)
....+.++. .+|+ +++.+.....++++|..+.+
T Consensus 299 --~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 336 (527)
T TIGR03075 299 --GVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGK 336 (527)
T ss_pred --CCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCc
Confidence 001123332 2554 55555555566666666543
No 81
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.0098 Score=55.04 Aligned_cols=43 Identities=12% Similarity=0.216 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHhhccCccchhhHHHHhHHHHHhhcCcchHHh
Q 043540 89 IPELGRDITINCLLRCSRSDYGAIASLNRAFRSLIQSGELYRL 131 (437)
Q Consensus 89 ~~~LP~dl~~~~L~rlP~~~~~~~~~V~k~w~sli~s~~~y~~ 131 (437)
|-.||||+++.|++.|+.+++.++..|||||..+..+..++..
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~ 140 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT 140 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee
Confidence 6689999999999999999999999999999999888777643
No 82
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=95.42 E-value=2.3 Score=39.62 Aligned_cols=139 Identities=14% Similarity=0.096 Sum_probs=69.3
Q ss_pred EEEEEcCccCCceEEEEECCCCceecC-CCCCCCccceeeEE-EC-CEEEEEeccCCCCCCCceEEEEECCCCcEEe-cC
Q 043540 186 ELLVFGKEVHGNAIYRYNLLTNTWSTG-MTMNTPRCLFGSAS-LG-EIAILAGGCDPRGKLLKSAELYNSITGTWMP-IS 261 (437)
Q Consensus 186 ~lyv~GG~~~~~~v~~yd~~t~~W~~~-~~~~~~r~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~ 261 (437)
.+|+.++. ...+.+||+.+++-... .....++ +++. -+ ..+|+.++. ...+.+||..+++... ++
T Consensus 2 ~~~~s~~~--d~~v~~~d~~t~~~~~~~~~~~~~~---~l~~~~dg~~l~~~~~~------~~~v~~~d~~~~~~~~~~~ 70 (300)
T TIGR03866 2 KAYVSNEK--DNTISVIDTATLEVTRTFPVGQRPR---GITLSKDGKLLYVCASD------SDTIQVIDLATGEVIGTLP 70 (300)
T ss_pred cEEEEecC--CCEEEEEECCCCceEEEEECCCCCC---ceEECCCCCEEEEEECC------CCeEEEEECCCCcEEEecc
Confidence 35555542 34788899887754322 1111111 2222 23 457777653 2568899998877643 22
Q ss_pred CCCcCCcCeeEEE-ECC-EEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEE-EE
Q 043540 262 SMHKARKMCSGVF-MDG-KFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLA-VV 338 (437)
Q Consensus 262 ~~~~~r~~~~~~~-~~g-~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 338 (437)
.... ....++ -++ .+|+.++.. ..+..||+.+.+- +..++..... ..++ .-
T Consensus 71 ~~~~---~~~~~~~~~g~~l~~~~~~~-------~~l~~~d~~~~~~--~~~~~~~~~~--------------~~~~~~~ 124 (300)
T TIGR03866 71 SGPD---PELFALHPNGKILYIANEDD-------NLVTVIDIETRKV--LAEIPVGVEP--------------EGMAVSP 124 (300)
T ss_pred CCCC---ccEEEECCCCCEEEEEcCCC-------CeEEEEECCCCeE--EeEeeCCCCc--------------ceEEECC
Confidence 2111 112222 244 466664432 3588899987532 2111111111 1222 23
Q ss_pred CCEEEEEeCC-CCeEEEEeCCCCc
Q 043540 339 NNELYAADHE-KEEVRKFDKGRKL 361 (437)
Q Consensus 339 ~~~ly~~gg~-~~~v~~yd~~~~~ 361 (437)
++.+++++.. ...+..||..+.+
T Consensus 125 dg~~l~~~~~~~~~~~~~d~~~~~ 148 (300)
T TIGR03866 125 DGKIVVNTSETTNMAHFIDTKTYE 148 (300)
T ss_pred CCCEEEEEecCCCeEEEEeCCCCe
Confidence 5666666543 3457778887654
No 83
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.29 E-value=0.34 Score=45.45 Aligned_cols=109 Identities=16% Similarity=0.204 Sum_probs=66.5
Q ss_pred CceEEEEECCCCceecCCCCCCCccceeeEEE-CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCC-----CcCCcC
Q 043540 196 GNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL-GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSM-----HKARKM 269 (437)
Q Consensus 196 ~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~-----~~~r~~ 269 (437)
...+..||+.+.+|..+..--... -..+... ++++|+.|-..-.+.....+..||..+++|+.++.. |.+...
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEE
Confidence 467888999999999876431111 1233333 678888876544332357789999999999988762 222211
Q ss_pred eeEEEEC-CEEEEEecccCCCCccCCeEEEEECCCCceEecCC
Q 043540 270 CSGVFMD-GKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITD 311 (437)
Q Consensus 270 ~~~~~~~-g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~ 311 (437)
......| .++++.|... . ....+..|| -.+|+.+..
T Consensus 94 ~~~~~~d~~~~~~aG~~~-~---g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSA-N---GSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred EEeeccCCceEEEeceec-C---CCceEEEEc--CCceEeccc
Confidence 1112223 4577766542 1 123466674 568998875
No 84
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.22 E-value=2.5 Score=38.99 Aligned_cols=185 Identities=11% Similarity=0.041 Sum_probs=100.5
Q ss_pred eEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceee-EEEC
Q 043540 150 EWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGS-ASLG 228 (437)
Q Consensus 150 ~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~-~~~~ 228 (437)
-+.++|+++..-++.+ +|..+........+.--.|.|++.|..... =..||.++.-+..+.. ..-.-.++ +.-+
T Consensus 125 aI~R~dpkt~evt~f~-lp~~~a~~nlet~vfD~~G~lWFt~q~G~y---GrLdPa~~~i~vfpaP-qG~gpyGi~atpd 199 (353)
T COG4257 125 AIGRLDPKTLEVTRFP-LPLEHADANLETAVFDPWGNLWFTGQIGAY---GRLDPARNVISVFPAP-QGGGPYGICATPD 199 (353)
T ss_pred eeEEecCcccceEEee-cccccCCCcccceeeCCCccEEEeeccccc---eecCcccCceeeeccC-CCCCCcceEECCC
Confidence 5677888776655443 233222211111122234667777642211 1467766655544322 22222333 3457
Q ss_pred CEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeE--EEECCEEEEEecccCCCCccCCeEEEEECCCCce
Q 043540 229 EIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSG--VFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKW 306 (437)
Q Consensus 229 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~--~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W 306 (437)
+.+|+.-=. -+.+-..|+.+..=+.++........... +--.|.+.+.- .....+..||+++..|
T Consensus 200 Gsvwyasla------gnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~witt-------wg~g~l~rfdPs~~sW 266 (353)
T COG4257 200 GSVWYASLA------GNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITT-------WGTGSLHRFDPSVTSW 266 (353)
T ss_pred CcEEEEecc------ccceEEcccccCCcceecCCCcccccccccccCccCcEEEec-------cCCceeeEeCcccccc
Confidence 888877211 15566777777754444432221111111 22246666651 1123589999999999
Q ss_pred EecCC-CCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCcEEEcc
Q 043540 307 TQITD-MFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKLWRTLG 366 (437)
Q Consensus 307 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~W~~v~ 366 (437)
.+.+- -..++.. ..-+--.|++++-....+.|.+||+++.+.+.+.
T Consensus 267 ~eypLPgs~arpy--------------s~rVD~~grVW~sea~agai~rfdpeta~ftv~p 313 (353)
T COG4257 267 IEYPLPGSKARPY--------------SMRVDRHGRVWLSEADAGAIGRFDPETARFTVLP 313 (353)
T ss_pred eeeeCCCCCCCcc--------------eeeeccCCcEEeeccccCceeecCcccceEEEec
Confidence 98752 1222222 1233345788887777889999999999998874
No 85
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=95.21 E-value=0.85 Score=44.42 Aligned_cols=193 Identities=17% Similarity=0.187 Sum_probs=99.4
Q ss_pred EEEEECCCCceecCCCCCCCccceeeEE--ECCEEEEEeccCCCCCCCceEEEEE--CCCCcEEecCCCCcCCcCeeEEE
Q 043540 199 IYRYNLLTNTWSTGMTMNTPRCLFGSAS--LGEIAILAGGCDPRGKLLKSAELYN--SITGTWMPISSMHKARKMCSGVF 274 (437)
Q Consensus 199 v~~yd~~t~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd--~~t~~W~~~~~~~~~r~~~~~~~ 274 (437)
++.||..+++++.+......-.-.-.+. -++.||+..... . ....+..|+ .++++.+.+...+........+.
T Consensus 17 ~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~-~--~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~ 93 (345)
T PF10282_consen 17 VFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGS-G--DSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIA 93 (345)
T ss_dssp EEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTS-S--TTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEE
T ss_pred EEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccc-c--CCCCEEEEEECCCcceeEEeeeeccCCCCcEEEE
Confidence 4556778999987654221111111222 367888886543 1 124455554 44568888876664333333333
Q ss_pred E--CCE-EEEEecccCCCCccCCeEEEEECCCC-ceEecCCC-------CCc-ccCCCCcccccccCCCCCEEEEE--CC
Q 043540 275 M--DGK-FYVIGGIGEGSSAMLTDVEMYDLETG-KWTQITDM-------FPA-RIGSDGVSVISAAGEAPPLLAVV--NN 340 (437)
Q Consensus 275 ~--~g~-lyv~GG~~~~~~~~~~~v~~yd~~~~-~W~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~ 340 (437)
+ +++ ||+. .+. ...+.+|++..+ +-.....+ |.+ |.. +..+|.+... +.
T Consensus 94 ~~~~g~~l~va-ny~------~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~----------~~h~H~v~~~pdg~ 156 (345)
T PF10282_consen 94 VDPDGRFLYVA-NYG------GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQE----------GPHPHQVVFSPDGR 156 (345)
T ss_dssp ECTTSSEEEEE-ETT------TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTS----------STCEEEEEE-TTSS
T ss_pred EecCCCEEEEE-Ecc------CCeEEEEEccCCcccceeeeecccCCCCCcccccc----------cccceeEEECCCCC
Confidence 3 444 5554 332 235778888764 22222110 111 111 1112444444 34
Q ss_pred EEEEEeCCCCeEEEEeCCCCc--EEEccCC--CCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCC
Q 043540 341 ELYAADHEKEEVRKFDKGRKL--WRTLGRL--PEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPH 416 (437)
Q Consensus 341 ~ly~~gg~~~~v~~yd~~~~~--W~~v~~l--p~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~ 416 (437)
.+|+.+-..+.|++|+..... ......+ |..... -++++..-+..+||+.-.. ..+.++.++..+..
T Consensus 157 ~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GP---Rh~~f~pdg~~~Yv~~e~s------~~v~v~~~~~~~g~ 227 (345)
T PF10282_consen 157 FVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGP---RHLAFSPDGKYAYVVNELS------NTVSVFDYDPSDGS 227 (345)
T ss_dssp EEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSE---EEEEE-TTSSEEEEEETTT------TEEEEEEEETTTTE
T ss_pred EEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCC---cEEEEcCCcCEEEEecCCC------CcEEEEeecccCCc
Confidence 688888777899999987765 6553322 222111 1344444456899997433 35667777755556
Q ss_pred ceec
Q 043540 417 WKLL 420 (437)
Q Consensus 417 W~~l 420 (437)
++.+
T Consensus 228 ~~~~ 231 (345)
T PF10282_consen 228 LTEI 231 (345)
T ss_dssp EEEE
T ss_pred eeEE
Confidence 6554
No 86
>PRK13684 Ycf48-like protein; Provisional
Probab=95.12 E-value=3.4 Score=40.00 Aligned_cols=191 Identities=14% Similarity=0.155 Sum_probs=92.2
Q ss_pred eCCEEEEEcCccCCceEEEEECCCCceecCCCC-CCCccceeeEEEC-CEEEEEeccCCCCCCCceEEEEECCCCcEEec
Q 043540 183 VGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTM-NTPRCLFGSASLG-EIAILAGGCDPRGKLLKSAELYNSITGTWMPI 260 (437)
Q Consensus 183 ~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~-~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 260 (437)
.++..|+.|. ...++.=+-.-.+|+++... ..+...+....++ +.+|++|.. ..+++=+=.-.+|+.+
T Consensus 98 ~~~~~~~~G~---~g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~-------G~i~~S~DgG~tW~~~ 167 (334)
T PRK13684 98 KGDEGWIVGQ---PSLLLHTTDGGKNWTRIPLSEKLPGSPYLITALGPGTAEMATNV-------GAIYRTTDGGKNWEAL 167 (334)
T ss_pred cCCcEEEeCC---CceEEEECCCCCCCeEccCCcCCCCCceEEEEECCCcceeeecc-------ceEEEECCCCCCceeC
Confidence 3555666652 22344433334689987532 2222333344443 445665432 2233322234689987
Q ss_pred CCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEE-EECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEE-E
Q 043540 261 SSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEM-YDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV-V 338 (437)
Q Consensus 261 ~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~-yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 338 (437)
..... -..+.+....+..|++.|.. + .++. .|....+|+.+.... ...- ..++. -
T Consensus 168 ~~~~~-g~~~~i~~~~~g~~v~~g~~---G----~i~~s~~~gg~tW~~~~~~~-~~~l--------------~~i~~~~ 224 (334)
T PRK13684 168 VEDAA-GVVRNLRRSPDGKYVAVSSR---G----NFYSTWEPGQTAWTPHQRNS-SRRL--------------QSMGFQP 224 (334)
T ss_pred cCCCc-ceEEEEEECCCCeEEEEeCC---c----eEEEEcCCCCCeEEEeeCCC-cccc--------------eeeeEcC
Confidence 65332 23344444444444443432 0 1322 345556899885422 2221 22333 4
Q ss_pred CCEEEEEeCCCCeEEEE--eCCCCcEEEccCCCCcccCCCcccE-EEE-EeCCEEEEEcCCCCCCCCeeEEEeeecCCCC
Q 043540 339 NNELYAADHEKEEVRKF--DKGRKLWRTLGRLPEQASSMNGWGL-AFR-ACGDQLIVIGGPRDSGGGIVELNGWVPDEGP 414 (437)
Q Consensus 339 ~~~ly~~gg~~~~v~~y--d~~~~~W~~v~~lp~~~~~~~~~~~-a~~-~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~ 414 (437)
+++++++|... ...+ +-.-.+|+.+. .|..... ++. ++. .-++.++++|... . ++.-....
T Consensus 225 ~g~~~~vg~~G--~~~~~s~d~G~sW~~~~-~~~~~~~---~~l~~v~~~~~~~~~~~G~~G----~-----v~~S~d~G 289 (334)
T PRK13684 225 DGNLWMLARGG--QIRFNDPDDLESWSKPI-IPEITNG---YGYLDLAYRTPGEIWAGGGNG----T-----LLVSKDGG 289 (334)
T ss_pred CCCEEEEecCC--EEEEccCCCCCcccccc-CCccccc---cceeeEEEcCCCCEEEEcCCC----e-----EEEeCCCC
Confidence 68899887543 2334 23335899764 3322111 122 122 2256888887532 1 23334456
Q ss_pred CCceecC
Q 043540 415 PHWKLLA 421 (437)
Q Consensus 415 ~~W~~l~ 421 (437)
.+|+.+.
T Consensus 290 ~tW~~~~ 296 (334)
T PRK13684 290 KTWEKDP 296 (334)
T ss_pred CCCeECC
Confidence 7998874
No 87
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.11 E-value=2.9 Score=39.03 Aligned_cols=164 Identities=15% Similarity=0.115 Sum_probs=94.9
Q ss_pred ceeEEeCCEEEEEcC---------c----------cCCceEEEEECCCCc----eecCCCCCCCccceeeEE------EC
Q 043540 178 KESLAVGTELLVFGK---------E----------VHGNAIYRYNLLTNT----WSTGMTMNTPRCLFGSAS------LG 228 (437)
Q Consensus 178 ~~~~~~~~~lyv~GG---------~----------~~~~~v~~yd~~t~~----W~~~~~~~~~r~~~~~~~------~~ 228 (437)
.++..+++.||+-|- . +--+.+..||..+++ |++- ...++...+=++ ++
T Consensus 40 NAV~~vDd~IyFGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkes--ih~~~~WaGEVSdIlYdP~~ 117 (339)
T PF09910_consen 40 NAVEWVDDFIYFGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKES--IHDKTKWAGEVSDILYDPYE 117 (339)
T ss_pred eeeeeecceEEEeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecc--cCCccccccchhheeeCCCc
Confidence 445677888886442 0 112578899988876 5543 222333332221 35
Q ss_pred CEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEe
Q 043540 229 EIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQ 308 (437)
Q Consensus 229 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~ 308 (437)
+.++++-+ |+ ..---++..|..++.=+.+.+-|.. -.+.+.|-.+|-+ . ........+.+||+.+++|..
T Consensus 118 D~LLlAR~-DG--h~nLGvy~ldr~~g~~~~L~~~ps~---KG~~~~D~a~F~i---~-~~~~g~~~i~~~Dli~~~~~~ 187 (339)
T PF09910_consen 118 DRLLLARA-DG--HANLGVYSLDRRTGKAEKLSSNPSL---KGTLVHDYACFGI---N-NFHKGVSGIHCLDLISGKWVI 187 (339)
T ss_pred CEEEEEec-CC--cceeeeEEEcccCCceeeccCCCCc---CceEeeeeEEEec---c-ccccCCceEEEEEccCCeEEE
Confidence 77887754 22 2235678888888888877666654 2345555555544 2 234556789999999999933
Q ss_pred cCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCC
Q 043540 309 ITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRK 360 (437)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~ 360 (437)
...+.+.+-....+..|.. ..++...+++|++ ....+.+.||..+
T Consensus 188 -e~f~~~~s~Dg~~~~~~~~----G~~~s~ynR~faF--~rGGi~vgnP~~~ 232 (339)
T PF09910_consen 188 -ESFDVSLSVDGGPVIRPEL----GAMASAYNRLFAF--VRGGIFVGNPYNG 232 (339)
T ss_pred -EecccccCCCCCceEeecc----ccEEEEeeeEEEE--EeccEEEeCCCCC
Confidence 2222222211112222221 3467888999988 3455888888743
No 88
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.10 E-value=0.59 Score=44.97 Aligned_cols=120 Identities=15% Similarity=0.148 Sum_probs=74.8
Q ss_pred ceEEEEECCCC-----cEEecCCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCc-eEecCCCCCcccC
Q 043540 245 KSAELYNSITG-----TWMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGK-WTQITDMFPARIG 318 (437)
Q Consensus 245 ~~~~~yd~~t~-----~W~~~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~~~~ 318 (437)
..+.+|+.... +.+.+......-.-.+.+.++|+|.+..|.. +..|++...+ +.....+..+...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~~---------l~v~~l~~~~~l~~~~~~~~~~~i 132 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVGNK---------LYVYDLDNSKTLLKKAFYDSPFYI 132 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEETTE---------EEEEEEETTSSEEEEEEE-BSSSE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeecCE---------EEEEEccCcccchhhheecceEEE
Confidence 67899998885 5666655555444566777899977766644 8899988888 7777654444333
Q ss_pred CCCcccccccCCCCCEEEEECCEEEEEeCC-CCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEe-CCEEEEE
Q 043540 319 SDGVSVISAAGEAPPLLAVVNNELYAADHE-KEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRAC-GDQLIVI 392 (437)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~-~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~-~~~l~v~ 392 (437)
..+.++++.|++.+.. +-.+..|+.+.++-..++.-..+. +-.++..+ ++..+++
T Consensus 133 --------------~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~-----~v~~~~~l~d~~~~i~ 189 (321)
T PF03178_consen 133 --------------TSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPR-----WVTAAEFLVDEDTIIV 189 (321)
T ss_dssp --------------EEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-B-----EEEEEEEE-SSSEEEE
T ss_pred --------------EEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCc-----cEEEEEEecCCcEEEE
Confidence 4577788877766532 335667788777788887544433 23444445 5443333
No 89
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.05 E-value=0.81 Score=44.79 Aligned_cols=140 Identities=14% Similarity=0.137 Sum_probs=80.6
Q ss_pred EEEEcCccCCceEEEEECCCCceecCCCCCCC--cc-ceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCC
Q 043540 187 LLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTP--RC-LFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSM 263 (437)
Q Consensus 187 lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~--r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 263 (437)
..+++|. ..-+|.||..+.+-.++.++..- +. ..--++..+..+++-|.. ..+.+....|+.|-.--.+
T Consensus 272 ~i~~s~r--rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~------G~I~lLhakT~eli~s~Ki 343 (514)
T KOG2055|consen 272 VIFTSGR--RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN------GHIHLLHAKTKELITSFKI 343 (514)
T ss_pred EEEeccc--ceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC------ceEEeehhhhhhhhheeee
Confidence 5555542 34689999999998888654321 11 112334455555665643 4466777778777433223
Q ss_pred CcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCc----eEecCCCCCcccCCCCcccccccCCCCCEEEEEC
Q 043540 264 HKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGK----WTQITDMFPARIGSDGVSVISAAGEAPPLLAVVN 339 (437)
Q Consensus 264 ~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~----W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (437)
+.......-..-..+|++.||++ .|+++|+.++. |..-... .+ ...+...+
T Consensus 344 eG~v~~~~fsSdsk~l~~~~~~G--------eV~v~nl~~~~~~~rf~D~G~v----~g-------------ts~~~S~n 398 (514)
T KOG2055|consen 344 EGVVSDFTFSSDSKELLASGGTG--------EVYVWNLRQNSCLHRFVDDGSV----HG-------------TSLCISLN 398 (514)
T ss_pred ccEEeeEEEecCCcEEEEEcCCc--------eEEEEecCCcceEEEEeecCcc----ce-------------eeeeecCC
Confidence 32222222222245677787775 59999998873 2222111 11 02344578
Q ss_pred CEEEEEeCCCCeEEEEeCCC
Q 043540 340 NELYAADHEKEEVRKFDKGR 359 (437)
Q Consensus 340 ~~ly~~gg~~~~v~~yd~~~ 359 (437)
+.+++.|...+-|-+||.++
T Consensus 399 g~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 399 GSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred CceEEeccCcceEEEeccch
Confidence 88888888888899998654
No 90
>PRK13684 Ycf48-like protein; Provisional
Probab=94.96 E-value=3.8 Score=39.69 Aligned_cols=175 Identities=15% Similarity=0.098 Sum_probs=88.5
Q ss_pred CEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEE-EECCCCcEEecCCC
Q 043540 185 TELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAEL-YNSITGTWMPISSM 263 (437)
Q Consensus 185 ~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~-yd~~t~~W~~~~~~ 263 (437)
+.+++.|. ...+++-+-.-++|+.+.... .-..+.+....+..|++.|..+ .++. .|....+|+.+..
T Consensus 143 ~~~~~~g~---~G~i~~S~DgG~tW~~~~~~~-~g~~~~i~~~~~g~~v~~g~~G------~i~~s~~~gg~tW~~~~~- 211 (334)
T PRK13684 143 GTAEMATN---VGAIYRTTDGGKNWEALVEDA-AGVVRNLRRSPDGKYVAVSSRG------NFYSTWEPGQTAWTPHQR- 211 (334)
T ss_pred Ccceeeec---cceEEEECCCCCCceeCcCCC-cceEEEEEECCCCeEEEEeCCc------eEEEEcCCCCCeEEEeeC-
Confidence 34555552 234565555567999876433 2233445545455555544322 1222 2444467998854
Q ss_pred CcCCcCeeEEE-ECCEEEEEecccCCCCccCCeEEEE--ECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE-C
Q 043540 264 HKARKMCSGVF-MDGKFYVIGGIGEGSSAMLTDVEMY--DLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV-N 339 (437)
Q Consensus 264 ~~~r~~~~~~~-~~g~lyv~GG~~~~~~~~~~~v~~y--d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 339 (437)
+..+...+++. -++.++++|... ...+ +-.-.+|+.+.........+ ...++.. +
T Consensus 212 ~~~~~l~~i~~~~~g~~~~vg~~G---------~~~~~s~d~G~sW~~~~~~~~~~~~~------------l~~v~~~~~ 270 (334)
T PRK13684 212 NSSRRLQSMGFQPDGNLWMLARGG---------QIRFNDPDDLESWSKPIIPEITNGYG------------YLDLAYRTP 270 (334)
T ss_pred CCcccceeeeEcCCCCEEEEecCC---------EEEEccCCCCCccccccCCccccccc------------eeeEEEcCC
Confidence 33344444444 378888886543 2333 22334899764211111110 0122333 6
Q ss_pred CEEEEEeCCCCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCC
Q 043540 340 NELYAADHEKEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGP 395 (437)
Q Consensus 340 ~~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~ 395 (437)
+.+|++|.. ..++.-...-.+|+.+......... +...+...++++|++|..
T Consensus 271 ~~~~~~G~~-G~v~~S~d~G~tW~~~~~~~~~~~~---~~~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 271 GEIWAGGGN-GTLLVSKDGGKTWEKDPVGEEVPSN---FYKIVFLDPEKGFVLGQR 322 (334)
T ss_pred CCEEEEcCC-CeEEEeCCCCCCCeECCcCCCCCcc---eEEEEEeCCCceEEECCC
Confidence 788888754 3455544556789997532221111 222233456788888863
No 91
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=94.89 E-value=0.51 Score=38.72 Aligned_cols=80 Identities=11% Similarity=0.156 Sum_probs=54.2
Q ss_pred EEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCC---
Q 043540 273 VFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEK--- 349 (437)
Q Consensus 273 ~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~--- 349 (437)
+.+||.+|.+.-.. ......+.+||+.+.+|+.+......... .....++.++|+|-++....
T Consensus 2 icinGvly~~a~~~---~~~~~~IvsFDv~~E~f~~i~~P~~~~~~-----------~~~~~L~~~~G~L~~v~~~~~~~ 67 (129)
T PF08268_consen 2 ICINGVLYWLAWSE---DSDNNVIVSFDVRSEKFRFIKLPEDPYSS-----------DCSSTLIEYKGKLALVSYNDQGE 67 (129)
T ss_pred EEECcEEEeEEEEC---CCCCcEEEEEEcCCceEEEEEeeeeeccc-----------cCccEEEEeCCeEEEEEecCCCC
Confidence 56799999987651 23456799999999999988643111111 11256889999999886431
Q ss_pred ---CeEEEE-eCCCCcEEEcc
Q 043540 350 ---EEVRKF-DKGRKLWRTLG 366 (437)
Q Consensus 350 ---~~v~~y-d~~~~~W~~v~ 366 (437)
-+||+. |..+++|.+..
T Consensus 68 ~~~~~iWvLeD~~k~~Wsk~~ 88 (129)
T PF08268_consen 68 PDSIDIWVLEDYEKQEWSKKH 88 (129)
T ss_pred cceEEEEEeeccccceEEEEE
Confidence 367777 45577899764
No 92
>PRK05137 tolB translocation protein TolB; Provisional
Probab=94.88 E-value=4.8 Score=40.50 Aligned_cols=146 Identities=9% Similarity=-0.061 Sum_probs=77.7
Q ss_pred CceEEEEECCCCceecCCCCCCCccceeeEEECC-EEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEE
Q 043540 196 GNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGE-IAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVF 274 (437)
Q Consensus 196 ~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~ 274 (437)
...++++|+.+++.+.+...+..... ....-++ +|++....++ ...++++|..++.-+.+...+.. .......
T Consensus 225 ~~~i~~~dl~~g~~~~l~~~~g~~~~-~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~~~~~-~~~~~~s 298 (435)
T PRK05137 225 RPRVYLLDLETGQRELVGNFPGMTFA-PRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTDSPAI-DTSPSYS 298 (435)
T ss_pred CCEEEEEECCCCcEEEeecCCCcccC-cEECCCCCEEEEEEecCC----CceEEEEECCCCceEEccCCCCc-cCceeEc
Confidence 36899999999988777654432111 1222234 5555433322 26789999999887777543321 1112223
Q ss_pred ECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECC-EEEEEeC--CCCe
Q 043540 275 MDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNN-ELYAADH--EKEE 351 (437)
Q Consensus 275 ~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ly~~gg--~~~~ 351 (437)
-||+..++.... .....++.+|+.++..+.+.... .... .....-+| .|++... ....
T Consensus 299 pDG~~i~f~s~~----~g~~~Iy~~d~~g~~~~~lt~~~-~~~~--------------~~~~SpdG~~ia~~~~~~~~~~ 359 (435)
T PRK05137 299 PDGSQIVFESDR----SGSPQLYVMNADGSNPRRISFGG-GRYS--------------TPVWSPRGDLIAFTKQGGGQFS 359 (435)
T ss_pred CCCCEEEEEECC----CCCCeEEEEECCCCCeEEeecCC-Cccc--------------CeEECCCCCEEEEEEcCCCceE
Confidence 355533332211 11246889998887777664321 1111 11122244 4444432 2347
Q ss_pred EEEEeCCCCcEEEcc
Q 043540 352 VRKFDKGRKLWRTLG 366 (437)
Q Consensus 352 v~~yd~~~~~W~~v~ 366 (437)
++.+|+.++..+.+.
T Consensus 360 i~~~d~~~~~~~~lt 374 (435)
T PRK05137 360 IGVMKPDGSGERILT 374 (435)
T ss_pred EEEEECCCCceEecc
Confidence 899998777666554
No 93
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=94.70 E-value=2.9 Score=37.01 Aligned_cols=147 Identities=16% Similarity=0.036 Sum_probs=75.8
Q ss_pred EEeCCEEEEEcCccCCceEEEEECCCCc--eecC----CCCCCCccceeeEEE--CCEEEEEeccCCCCCCCceEEEEEC
Q 043540 181 LAVGTELLVFGKEVHGNAIYRYNLLTNT--WSTG----MTMNTPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNS 252 (437)
Q Consensus 181 ~~~~~~lyv~GG~~~~~~v~~yd~~t~~--W~~~----~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~ 252 (437)
+...+++|+|-| ..+|+++..+.. -+.+ +.+| ..--++... ++++|++-| +..++||.
T Consensus 13 ~~~~g~~y~FkG----~~~w~~~~~~~~~~p~~I~~~w~~~p--~~IDAa~~~~~~~~~yfFkg--------~~yw~~~~ 78 (194)
T cd00094 13 TTLRGELYFFKG----RYFWRLSPGKPPGSPFLISSFWPSLP--SPVDAAFERPDTGKIYFFKG--------DKYWVYTG 78 (194)
T ss_pred EEeCCEEEEEeC----CEEEEEeCCCCCCCCeEhhhhCCCCC--CCccEEEEECCCCEEEEECC--------CEEEEEcC
Confidence 455689999965 357777754111 1111 1122 111223333 289999976 46778876
Q ss_pred CCCcEE---ecCCCCcCC--cC-eeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCC--cccCCCCc
Q 043540 253 ITGTWM---PISSMHKAR--KM-CSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFP--ARIGSDGV 322 (437)
Q Consensus 253 ~t~~W~---~~~~~~~~r--~~-~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~--~~~~~~~~ 322 (437)
.+..+. .+.....+. .. -++... ++++|++.|.. .+.||..+++...--+-+. ...+
T Consensus 79 ~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~~---------y~ry~~~~~~v~~~yP~~i~~~w~g---- 145 (194)
T cd00094 79 KNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGDK---------YWRYDEKTQKMDPGYPKLIETDFPG---- 145 (194)
T ss_pred cccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCCE---------EEEEeCCCccccCCCCcchhhcCCC----
Confidence 642221 111111111 21 223333 68999998865 8889887665421111000 0011
Q ss_pred ccccccCCCCCEEEEEC-CEEEEEeCCCCeEEEEeCCCCc
Q 043540 323 SVISAAGEAPPLLAVVN-NELYAADHEKEEVRKFDKGRKL 361 (437)
Q Consensus 323 ~~~~~~~~~~~~~~~~~-~~ly~~gg~~~~v~~yd~~~~~ 361 (437)
+|. . ..++...+ +++|++ .....++||..+++
T Consensus 146 --~p~--~-idaa~~~~~~~~yfF--~g~~y~~~d~~~~~ 178 (194)
T cd00094 146 --VPD--K-VDAAFRWLDGYYYFF--KGDQYWRFDPRSKE 178 (194)
T ss_pred --cCC--C-cceeEEeCCCcEEEE--ECCEEEEEeCccce
Confidence 010 0 01233344 899999 45689999998876
No 94
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.48 E-value=4 Score=37.73 Aligned_cols=223 Identities=11% Similarity=0.062 Sum_probs=116.7
Q ss_pred EEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCceecCC-CCCCCccceeeEEEC--
Q 043540 152 EAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGM-TMNTPRCLFGSASLG-- 228 (437)
Q Consensus 152 ~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~-~~~~~r~~~~~~~~~-- 228 (437)
-..||.+++=...|. +.....+. .++--++..++.- ....+-.+|++|..-++.+ +...+-.+.-.++++
T Consensus 86 GhLdP~tGev~~ypL-g~Ga~Phg---iv~gpdg~~Witd---~~~aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~ 158 (353)
T COG4257 86 GHLDPATGEVETYPL-GSGASPHG---IVVGPDGSAWITD---TGLAIGRLDPKTLEVTRFPLPLEHADANLETAVFDPW 158 (353)
T ss_pred eecCCCCCceEEEec-CCCCCCce---EEECCCCCeeEec---CcceeEEecCcccceEEeecccccCCCcccceeeCCC
Confidence 356777776554432 22222211 1111234455543 2236788999888776654 222333334445554
Q ss_pred CEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEE-EECCEEEEEecccCCCCccCCeEEEEECCCCceE
Q 043540 229 EIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGV-FMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWT 307 (437)
Q Consensus 229 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~-~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~ 307 (437)
+.+++.|-....+ +.||.++.-+..+.. ..-.-++++ .-||.+|+..=.. +-+-..|+.+..=+
T Consensus 159 G~lWFt~q~G~yG-------rLdPa~~~i~vfpaP-qG~gpyGi~atpdGsvwyaslag-------naiaridp~~~~ae 223 (353)
T COG4257 159 GNLWFTGQIGAYG-------RLDPARNVISVFPAP-QGGGPYGICATPDGSVWYASLAG-------NAIARIDPFAGHAE 223 (353)
T ss_pred ccEEEeeccccce-------ecCcccCceeeeccC-CCCCCcceEECCCCcEEEEeccc-------cceEEcccccCCcc
Confidence 5777776422221 456666554433322 233333333 4489998873221 23667777776444
Q ss_pred ecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEE-eC
Q 043540 308 QITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRA-CG 386 (437)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~-~~ 386 (437)
.++. |...... .. ..-+.-.+++++-......+++|||.+..|.+-. ||..... .-++.+ -.
T Consensus 224 v~p~-P~~~~~g--------sR---riwsdpig~~wittwg~g~l~rfdPs~~sW~eyp-LPgs~ar----pys~rVD~~ 286 (353)
T COG4257 224 VVPQ-PNALKAG--------SR---RIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYP-LPGSKAR----PYSMRVDRH 286 (353)
T ss_pred eecC-CCccccc--------cc---ccccCccCcEEEeccCCceeeEeCcccccceeee-CCCCCCC----cceeeeccC
Confidence 4432 2221110 00 1112335788888766788999999999999874 4433221 122222 34
Q ss_pred CEEEEEcCCCCCCCCeeEEEeeecCCCCCCceecC
Q 043540 387 DQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKLLA 421 (437)
Q Consensus 387 ~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~ 421 (437)
|++++---- ...+.+||+++.+.++++
T Consensus 287 grVW~sea~--------agai~rfdpeta~ftv~p 313 (353)
T COG4257 287 GRVWLSEAD--------AGAIGRFDPETARFTVLP 313 (353)
T ss_pred CcEEeeccc--------cCceeecCcccceEEEec
Confidence 677763210 112567899999988875
No 95
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=94.46 E-value=5.4 Score=39.16 Aligned_cols=150 Identities=17% Similarity=0.152 Sum_probs=86.3
Q ss_pred EEeCCEEEEEcCccCCceEEEEECCCCc--eecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCc--
Q 043540 181 LAVGTELLVFGKEVHGNAIYRYNLLTNT--WSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGT-- 256 (437)
Q Consensus 181 ~~~~~~lyv~GG~~~~~~v~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-- 256 (437)
+..++.+|+.. ....++.+|+.+++ |+....--..........-+++||+-.. + ..+++||..+++
T Consensus 65 ~~~dg~v~~~~---~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~-~------g~~y~ld~~~G~~~ 134 (370)
T COG1520 65 ADGDGTVYVGT---RDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSW-D------GKLYALDASTGTLV 134 (370)
T ss_pred EeeCCeEEEec---CCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecc-c------ceEEEEECCCCcEE
Confidence 66788898862 22378999999887 8754321000111112222677766532 2 268899997655
Q ss_pred EEecCCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCC--ceEecCCC--CCcccCCCCcccccccCCCC
Q 043540 257 WMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETG--KWTQITDM--FPARIGSDGVSVISAAGEAP 332 (437)
Q Consensus 257 W~~~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~--~W~~~~~~--~~~~~~~~~~~~~~~~~~~~ 332 (437)
|+.-.... .+..-..++.++.+|+... ...++++|..++ .|+.-... .....+
T Consensus 135 W~~~~~~~-~~~~~~~v~~~~~v~~~s~--------~g~~~al~~~tG~~~W~~~~~~~~~~~~~~-------------- 191 (370)
T COG1520 135 WSRNVGGS-PYYASPPVVGDGTVYVGTD--------DGHLYALNADTGTLKWTYETPAPLSLSIYG-------------- 191 (370)
T ss_pred EEEecCCC-eEEecCcEEcCcEEEEecC--------CCeEEEEEccCCcEEEEEecCCcccccccc--------------
Confidence 87654332 3333445666788887631 124777777755 47744332 222222
Q ss_pred CEEEEECCEEEEEeCC-CCeEEEEeCCCCc--EEE
Q 043540 333 PLLAVVNNELYAADHE-KEEVRKFDKGRKL--WRT 364 (437)
Q Consensus 333 ~~~~~~~~~ly~~gg~-~~~v~~yd~~~~~--W~~ 364 (437)
..+..++.+|+-... ...++.+|+++++ |..
T Consensus 192 -~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 192 -SPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQ 225 (370)
T ss_pred -CceeecceEEEecCCCcceEEEEEccCCcEeeee
Confidence 123667777776432 3469999997764 875
No 96
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=94.42 E-value=5 Score=38.57 Aligned_cols=218 Identities=13% Similarity=0.107 Sum_probs=107.0
Q ss_pred CCEEEEEcCccCCceEEEEECCCCc-e-ecCCCCCCCccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCC-cEE
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNT-W-STGMTMNTPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITG-TWM 258 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~-W-~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~-~W~ 258 (437)
+..+|+... ..+.+.+|+..++. . ..+..++.....|.++.. +..+|+..- ..+.+.+||..++ .-.
T Consensus 91 g~~l~v~~~--~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~------~~~~v~v~d~~~~g~l~ 162 (330)
T PRK11028 91 GRFLFSASY--NANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCL------KEDRIRLFTLSDDGHLV 162 (330)
T ss_pred CCEEEEEEc--CCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeC------CCCEEEEEEECCCCccc
Confidence 445666542 24567788875432 1 122222222223444433 346776642 1367899998763 222
Q ss_pred ecC----CCCcCCcCeeEEEE-CC-EEEEEecccCCCCccCCeEEEEECC--CCceEec---CCCCCcccCCCCcccccc
Q 043540 259 PIS----SMHKARKMCSGVFM-DG-KFYVIGGIGEGSSAMLTDVEMYDLE--TGKWTQI---TDMFPARIGSDGVSVISA 327 (437)
Q Consensus 259 ~~~----~~~~~r~~~~~~~~-~g-~lyv~GG~~~~~~~~~~~v~~yd~~--~~~W~~~---~~~~~~~~~~~~~~~~~~ 327 (437)
... ..+....-..+++. +| .+|+.... .+.+.+||+. +++.+.+ ..+|....+.
T Consensus 163 ~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-------~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~-------- 227 (330)
T PRK11028 163 AQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-------NSSVDVWQLKDPHGEIECVQTLDMMPADFSDT-------- 227 (330)
T ss_pred ccCCCceecCCCCCCceEEECCCCCEEEEEecC-------CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCC--------
Confidence 110 11111111223333 43 56776432 2457777765 4455443 2333221110
Q ss_pred cCCCCCEEEE-ECC-EEEEEeCCCCeEEEEeCC--CCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCee
Q 043540 328 AGEAPPLLAV-VNN-ELYAADHEKEEVRKFDKG--RKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIV 403 (437)
Q Consensus 328 ~~~~~~~~~~-~~~-~ly~~gg~~~~v~~yd~~--~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~ 403 (437)
.++..++. -++ .||+.....+.|.+|+.. ...++.+...+..... .+.++..-+..||+.+... .
T Consensus 228 --~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p---~~~~~~~dg~~l~va~~~~------~ 296 (330)
T PRK11028 228 --RWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQP---RGFNIDHSGKYLIAAGQKS------H 296 (330)
T ss_pred --ccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccC---CceEECCCCCEEEEEEccC------C
Confidence 00011222 234 577765456677777764 4456655544432111 2344444456778765322 3
Q ss_pred EEEeeecCCCCCCceecCccCCCceEeeeEEe
Q 043540 404 ELNGWVPDEGPPHWKLLARQPMCGFVFNCTVM 435 (437)
Q Consensus 404 ~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~v~ 435 (437)
.+.+|..|..+..++.+...+.+....+++++
T Consensus 297 ~v~v~~~~~~~g~l~~~~~~~~g~~P~~~~~~ 328 (330)
T PRK11028 297 HISVYEIDGETGLLTELGRYAVGQGPMWVSVL 328 (330)
T ss_pred cEEEEEEcCCCCcEEEccccccCCCceEEEEE
Confidence 57788888788888888777665554444443
No 97
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=94.40 E-value=3.7 Score=37.04 Aligned_cols=143 Identities=17% Similarity=0.207 Sum_probs=66.8
Q ss_pred CEEEEEcCccCCceEEEEECCCCceecCCCCCCCc-cceeeEEE-CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCC
Q 043540 185 TELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPR-CLFGSASL-GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISS 262 (437)
Q Consensus 185 ~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r-~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 262 (437)
+..+++++. ...+.+||..+++... .+.... ...+.... ++.+++.|+.+ ..+.+||..+.+-...
T Consensus 63 ~~~l~~~~~--~~~i~i~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~~~-- 130 (289)
T cd00200 63 GTYLASGSS--DKTIRLWDLETGECVR--TLTGHTSYVSSVAFSPDGRILSSSSRD------KTIKVWDVETGKCLTT-- 130 (289)
T ss_pred CCEEEEEcC--CCeEEEEEcCcccceE--EEeccCCcEEEEEEcCCCCEEEEecCC------CeEEEEECCCcEEEEE--
Confidence 334445443 4578889987753211 111111 11122222 34566665522 5688899885543221
Q ss_pred CCcCCcCe-eEEEEC-CEEEEEecccCCCCccCCeEEEEECCCCce-EecCCCCCcccCCCCcccccccCCCCCEEEEE-
Q 043540 263 MHKARKMC-SGVFMD-GKFYVIGGIGEGSSAMLTDVEMYDLETGKW-TQITDMFPARIGSDGVSVISAAGEAPPLLAVV- 338 (437)
Q Consensus 263 ~~~~r~~~-~~~~~~-g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 338 (437)
+....... ...+.. +++++.+..+ ..+..||+.+.+- ..+. ..... ...+...
T Consensus 131 ~~~~~~~i~~~~~~~~~~~l~~~~~~-------~~i~i~d~~~~~~~~~~~---~~~~~-------------i~~~~~~~ 187 (289)
T cd00200 131 LRGHTDWVNSVAFSPDGTFVASSSQD-------GTIKLWDLRTGKCVATLT---GHTGE-------------VNSVAFSP 187 (289)
T ss_pred eccCCCcEEEEEEcCcCCEEEEEcCC-------CcEEEEEccccccceeEe---cCccc-------------cceEEECC
Confidence 11111122 223333 4555554423 2488898875431 1111 11101 0122322
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCcE
Q 043540 339 NNELYAADHEKEEVRKFDKGRKLW 362 (437)
Q Consensus 339 ~~~ly~~gg~~~~v~~yd~~~~~W 362 (437)
+++.+++++..+.+.+||..+.+-
T Consensus 188 ~~~~l~~~~~~~~i~i~d~~~~~~ 211 (289)
T cd00200 188 DGEKLLSSSSDGTIKLWDLSTGKC 211 (289)
T ss_pred CcCEEEEecCCCcEEEEECCCCce
Confidence 444555555577899999987443
No 98
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.35 E-value=5.6 Score=40.75 Aligned_cols=116 Identities=15% Similarity=0.123 Sum_probs=65.6
Q ss_pred eeEEECCEEEEEeccCCCCCCCceEEEEECCCCc--EEecCCCCcCC-----cCeeEEEEC-CEEEEEecccCCCCccCC
Q 043540 223 GSASLGEIAILAGGCDPRGKLLKSAELYNSITGT--WMPISSMHKAR-----KMCSGVFMD-GKFYVIGGIGEGSSAMLT 294 (437)
Q Consensus 223 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~r-----~~~~~~~~~-g~lyv~GG~~~~~~~~~~ 294 (437)
+-++.+++||+.... ..+..+|..+++ |+.-...+... .....++.+ +++|+.... .
T Consensus 56 sPvv~~g~vy~~~~~-------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~--------g 120 (488)
T cd00216 56 TPLVVDGDMYFTTSH-------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFD--------G 120 (488)
T ss_pred CCEEECCEEEEeCCC-------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCC--------C
Confidence 346779999987432 567888998876 98643322111 111234456 888875332 2
Q ss_pred eEEEEECCCCc--eEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEe--------CCCCeEEEEeCCCCc--E
Q 043540 295 DVEMYDLETGK--WTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAAD--------HEKEEVRKFDKGRKL--W 362 (437)
Q Consensus 295 ~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~g--------g~~~~v~~yd~~~~~--W 362 (437)
.+.++|.++++ |+.-......... ......++.++.+|+.. +....++.+|.++.+ |
T Consensus 121 ~v~AlD~~TG~~~W~~~~~~~~~~~~-----------~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 121 RLVALDAETGKQVWKFGNNDQVPPGY-----------TMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred eEEEEECCCCCEeeeecCCCCcCcce-----------EecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence 58899998764 8754322110000 00012355567766542 123578999998764 8
Q ss_pred EE
Q 043540 363 RT 364 (437)
Q Consensus 363 ~~ 364 (437)
+.
T Consensus 190 ~~ 191 (488)
T cd00216 190 RF 191 (488)
T ss_pred Ee
Confidence 75
No 99
>PRK00178 tolB translocation protein TolB; Provisional
Probab=94.10 E-value=7.1 Score=39.13 Aligned_cols=158 Identities=13% Similarity=0.011 Sum_probs=84.2
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEEC-CEEEEEeccCCCCCCCceEEEEECCCCcEEecCC
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLG-EIAILAGGCDPRGKLLKSAELYNSITGTWMPISS 262 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 262 (437)
|..|+...-......++++|+.+++-+.+...+..-. .....-+ .+|++....++ ...++++|..++..+.+..
T Consensus 210 G~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~-~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~ 284 (430)
T PRK00178 210 GKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNG-APAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTN 284 (430)
T ss_pred CCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcC-CeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEccc
Confidence 3345443322234579999999988777754432111 1111223 45554432221 2578999999999887754
Q ss_pred CCcCCcCeeEEEECC-EEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE-CC
Q 043540 263 MHKARKMCSGVFMDG-KFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV-NN 340 (437)
Q Consensus 263 ~~~~r~~~~~~~~~g-~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 340 (437)
.+.. .......-|| +|++..... ....++.+|+.+++++.+.... .... .....- ++
T Consensus 285 ~~~~-~~~~~~spDg~~i~f~s~~~-----g~~~iy~~d~~~g~~~~lt~~~--~~~~-------------~~~~Spdg~ 343 (430)
T PRK00178 285 HPAI-DTEPFWGKDGRTLYFTSDRG-----GKPQIYKVNVNGGRAERVTFVG--NYNA-------------RPRLSADGK 343 (430)
T ss_pred CCCC-cCCeEECCCCCEEEEEECCC-----CCceEEEEECCCCCEEEeecCC--CCcc-------------ceEECCCCC
Confidence 3211 1111122254 455543221 1236889999998887764211 1110 111122 34
Q ss_pred EEEEEeCC--CCeEEEEeCCCCcEEEccC
Q 043540 341 ELYAADHE--KEEVRKFDKGRKLWRTLGR 367 (437)
Q Consensus 341 ~ly~~gg~--~~~v~~yd~~~~~W~~v~~ 367 (437)
.|++.... ...|+.+|..++..+.+..
T Consensus 344 ~i~~~~~~~~~~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 344 TLVMVHRQDGNFHVAAQDLQRGSVRILTD 372 (430)
T ss_pred EEEEEEccCCceEEEEEECCCCCEEEccC
Confidence 45444322 2368999999998888764
No 100
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=94.05 E-value=1.3 Score=43.22 Aligned_cols=120 Identities=17% Similarity=0.299 Sum_probs=70.7
Q ss_pred cCeeEEEE-CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE-CCEEEEE
Q 043540 268 KMCSGVFM-DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV-NNELYAA 345 (437)
Q Consensus 268 ~~~~~~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ly~~ 345 (437)
...++++. ||-|+..|-.+ ..+..||+++.. .+..+|. ..+ .+ ..+..- ||...+.
T Consensus 349 ~~ts~~fHpDgLifgtgt~d-------~~vkiwdlks~~--~~a~Fpg-ht~---~v---------k~i~FsENGY~Lat 406 (506)
T KOG0289|consen 349 EYTSAAFHPDGLIFGTGTPD-------GVVKIWDLKSQT--NVAKFPG-HTG---PV---------KAISFSENGYWLAT 406 (506)
T ss_pred eeEEeeEcCCceEEeccCCC-------ceEEEEEcCCcc--ccccCCC-CCC---ce---------eEEEeccCceEEEE
Confidence 34556665 77788776544 347889998876 4544444 222 00 123333 4554455
Q ss_pred eCCCCeEEEEeCCCCc-EEEccCCCCcccCCCcccEEEEEe--CCEEEEEcCCCCCCCCeeEEEeeecCCCCCCceecCc
Q 043540 346 DHEKEEVRKFDKGRKL-WRTLGRLPEQASSMNGWGLAFRAC--GDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKLLAR 422 (437)
Q Consensus 346 gg~~~~v~~yd~~~~~-W~~v~~lp~~~~~~~~~~~a~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~ 422 (437)
+.....|..||..+.. .+.+ .+++.. +...... .+..++++|.. +.+|.++..+.+|+++..
T Consensus 407 ~add~~V~lwDLRKl~n~kt~-~l~~~~------~v~s~~fD~SGt~L~~~g~~--------l~Vy~~~k~~k~W~~~~~ 471 (506)
T KOG0289|consen 407 AADDGSVKLWDLRKLKNFKTI-QLDEKK------EVNSLSFDQSGTYLGIAGSD--------LQVYICKKKTKSWTEIKE 471 (506)
T ss_pred EecCCeEEEEEehhhccccee-eccccc------cceeEEEcCCCCeEEeecce--------eEEEEEecccccceeeeh
Confidence 5555569999998755 2222 122221 2222222 36777777654 788999999999999965
Q ss_pred cC
Q 043540 423 QP 424 (437)
Q Consensus 423 ~p 424 (437)
++
T Consensus 472 ~~ 473 (506)
T KOG0289|consen 472 LA 473 (506)
T ss_pred hh
Confidence 44
No 101
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=94.02 E-value=4.5 Score=36.51 Aligned_cols=143 Identities=17% Similarity=0.216 Sum_probs=66.3
Q ss_pred CEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEEC-CEEEEEeccCCCCCCCceEEEEECCCCcEEecCCC
Q 043540 185 TELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLG-EIAILAGGCDPRGKLLKSAELYNSITGTWMPISSM 263 (437)
Q Consensus 185 ~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 263 (437)
+.+++.++ ....+.+||..+.+-...-. ........+.... +.+++.|+.+ ..+.+||..+++- +..+
T Consensus 105 ~~~~~~~~--~~~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~------~~i~i~d~~~~~~--~~~~ 173 (289)
T cd00200 105 GRILSSSS--RDKTIKVWDVETGKCLTTLR-GHTDWVNSVAFSPDGTFVASSSQD------GTIKLWDLRTGKC--VATL 173 (289)
T ss_pred CCEEEEec--CCCeEEEEECCCcEEEEEec-cCCCcEEEEEEcCcCCEEEEEcCC------CcEEEEEcccccc--ceeE
Confidence 35555554 23568889987544322111 1111112222333 3444443312 4578888875431 1111
Q ss_pred CcCC-cCeeEEEE-CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE-CC
Q 043540 264 HKAR-KMCSGVFM-DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV-NN 340 (437)
Q Consensus 264 ~~~r-~~~~~~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 340 (437)
.... ........ +++.+++++.+ ..+..||+.+.+-... +...... ...+... ++
T Consensus 174 ~~~~~~i~~~~~~~~~~~l~~~~~~-------~~i~i~d~~~~~~~~~--~~~~~~~-------------i~~~~~~~~~ 231 (289)
T cd00200 174 TGHTGEVNSVAFSPDGEKLLSSSSD-------GTIKLWDLSTGKCLGT--LRGHENG-------------VNSVAFSPDG 231 (289)
T ss_pred ecCccccceEEECCCcCEEEEecCC-------CcEEEEECCCCceecc--hhhcCCc-------------eEEEEEcCCC
Confidence 1111 11222222 44455555433 3488899876433222 1110001 0123333 35
Q ss_pred EEEEEeCCCCeEEEEeCCCC
Q 043540 341 ELYAADHEKEEVRKFDKGRK 360 (437)
Q Consensus 341 ~ly~~gg~~~~v~~yd~~~~ 360 (437)
.+++.+...+.+..||..+.
T Consensus 232 ~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 232 YLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred cEEEEEcCCCcEEEEEcCCc
Confidence 66666655778999998764
No 102
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.02 E-value=8.6 Score=39.82 Aligned_cols=115 Identities=16% Similarity=0.197 Sum_probs=68.7
Q ss_pred eeEEECCEEEEEeccCCCCCCCceEEEEECCCCc--EEecCCCCcCC--------cCeeEEEECCEEEEEecccCCCCcc
Q 043540 223 GSASLGEIAILAGGCDPRGKLLKSAELYNSITGT--WMPISSMHKAR--------KMCSGVFMDGKFYVIGGIGEGSSAM 292 (437)
Q Consensus 223 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~r--------~~~~~~~~~g~lyv~GG~~~~~~~~ 292 (437)
+-++.++.||+... ...+..+|..|++ |+.-...+... ...+.++.++++|+....
T Consensus 64 tPvv~~g~vyv~s~-------~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d------- 129 (527)
T TIGR03075 64 QPLVVDGVMYVTTS-------YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD------- 129 (527)
T ss_pred CCEEECCEEEEECC-------CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCC-------
Confidence 34567899998643 2458889998876 88654332111 112345678898875332
Q ss_pred CCeEEEEECCCCc--eEecC-CCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeC-----CCCeEEEEeCCCCc--E
Q 043540 293 LTDVEMYDLETGK--WTQIT-DMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADH-----EKEEVRKFDKGRKL--W 362 (437)
Q Consensus 293 ~~~v~~yd~~~~~--W~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg-----~~~~v~~yd~~~~~--W 362 (437)
..+.++|.++++ |+.-. ........ ....++.+++||+... ....|..||.++.+ |
T Consensus 130 -g~l~ALDa~TGk~~W~~~~~~~~~~~~~-------------tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW 195 (527)
T TIGR03075 130 -ARLVALDAKTGKVVWSKKNGDYKAGYTI-------------TAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVW 195 (527)
T ss_pred -CEEEEEECCCCCEEeecccccccccccc-------------cCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeE
Confidence 248999998875 76432 22111110 0123566888877532 24579999998865 7
Q ss_pred EEc
Q 043540 363 RTL 365 (437)
Q Consensus 363 ~~v 365 (437)
+.-
T Consensus 196 ~~~ 198 (527)
T TIGR03075 196 RRY 198 (527)
T ss_pred ecc
Confidence 643
No 103
>PRK04922 tolB translocation protein TolB; Provisional
Probab=93.85 E-value=8.1 Score=38.88 Aligned_cols=146 Identities=14% Similarity=0.041 Sum_probs=78.8
Q ss_pred CceEEEEECCCCceecCCCCCCCccceeeEEE-CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEE
Q 043540 196 GNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL-GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVF 274 (437)
Q Consensus 196 ~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~ 274 (437)
...++++|..+++-+.+...+.... .....- +.+|++....++ ...++++|..++.-+.+..-... .......
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~~~-~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt~~~~~-~~~~~~s 300 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGING-APSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLTNHFGI-DTEPTWA 300 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCCcc-CceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECccCCCC-ccceEEC
Confidence 4579999999888777665432211 112222 345655433322 25789999999887766433211 1111222
Q ss_pred ECCE-EEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECC-EEEEEeCC--CC
Q 043540 275 MDGK-FYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNN-ELYAADHE--KE 350 (437)
Q Consensus 275 ~~g~-lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ly~~gg~--~~ 350 (437)
-||+ |++..... ....++.+|..+++.+.+..- ..... .....-+| .|++.... ..
T Consensus 301 pDG~~l~f~sd~~-----g~~~iy~~dl~~g~~~~lt~~--g~~~~-------------~~~~SpDG~~Ia~~~~~~~~~ 360 (433)
T PRK04922 301 PDGKSIYFTSDRG-----GRPQIYRVAASGGSAERLTFQ--GNYNA-------------RASVSPDGKKIAMVHGSGGQY 360 (433)
T ss_pred CCCCEEEEEECCC-----CCceEEEEECCCCCeEEeecC--CCCcc-------------CEEECCCCCEEEEEECCCCce
Confidence 3555 44443221 123688899988888776421 11110 11122244 45444332 23
Q ss_pred eEEEEeCCCCcEEEccC
Q 043540 351 EVRKFDKGRKLWRTLGR 367 (437)
Q Consensus 351 ~v~~yd~~~~~W~~v~~ 367 (437)
.|+++|..+++.+.+..
T Consensus 361 ~I~v~d~~~g~~~~Lt~ 377 (433)
T PRK04922 361 RIAVMDLSTGSVRTLTP 377 (433)
T ss_pred eEEEEECCCCCeEECCC
Confidence 69999999988887653
No 104
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=93.83 E-value=0.61 Score=38.25 Aligned_cols=82 Identities=17% Similarity=0.259 Sum_probs=55.3
Q ss_pred EEECCEEEEEeCC----CCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeec-
Q 043540 336 AVVNNELYAADHE----KEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVP- 410 (437)
Q Consensus 336 ~~~~~~ly~~gg~----~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~- 410 (437)
+.+||.||.+... ...|..||..+.+|+.+. +|.... .......++.++|+|.++.-..... ...+++|.+
T Consensus 2 icinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~-~P~~~~-~~~~~~~L~~~~G~L~~v~~~~~~~--~~~~~iWvLe 77 (129)
T PF08268_consen 2 ICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIK-LPEDPY-SSDCSSTLIEYKGKLALVSYNDQGE--PDSIDIWVLE 77 (129)
T ss_pred EEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEE-eeeeec-cccCccEEEEeCCeEEEEEecCCCC--cceEEEEEee
Confidence 4679999987543 568999999999998875 331111 1113466778999998876443211 345777776
Q ss_pred CCCCCCceecC
Q 043540 411 DEGPPHWKLLA 421 (437)
Q Consensus 411 d~~~~~W~~l~ 421 (437)
|.++.+|.+.-
T Consensus 78 D~~k~~Wsk~~ 88 (129)
T PF08268_consen 78 DYEKQEWSKKH 88 (129)
T ss_pred ccccceEEEEE
Confidence 56678999773
No 105
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.65 E-value=9.6 Score=39.07 Aligned_cols=208 Identities=17% Similarity=0.220 Sum_probs=102.2
Q ss_pred EEEEecCceEEEeccCCC--CeeeCCCCCCcc-ccccCCceeEEeC-CEEEEEcCccCCceEEEEECCCCc--eecCCCC
Q 043540 142 VYFSCKLKEWEAFDPIHH--RWMHLPPMNASD-CFMCADKESLAVG-TELLVFGKEVHGNAIYRYNLLTNT--WSTGMTM 215 (437)
Q Consensus 142 l~~~~~~~~~~~yDp~~~--~W~~l~~~p~~~-~~~~~~~~~~~~~-~~lyv~GG~~~~~~v~~yd~~t~~--W~~~~~~ 215 (437)
+|+......+.++|..+. .|+.-...+... .........+..+ +.+|+.. ....++.+|..|++ |+.-..-
T Consensus 64 vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~---~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 64 MYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGT---FDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred EEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEec---CCCeEEEEECCCCCEeeeecCCC
Confidence 455444567888998876 487533222111 0000111223445 7777643 23578999998764 7754322
Q ss_pred CC-Cc--cceeeEEECCEEEEEeccCCCC---CCCceEEEEECCCCc--EEecCCCCc---CCc---------------C
Q 043540 216 NT-PR--CLFGSASLGEIAILAGGCDPRG---KLLKSAELYNSITGT--WMPISSMHK---ARK---------------M 269 (437)
Q Consensus 216 ~~-~r--~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~~yd~~t~~--W~~~~~~~~---~r~---------------~ 269 (437)
.. .. ...+.++.++.+|+ |..+... .....+..+|.+|++ |+.-...+. .+. .
T Consensus 141 ~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw 219 (488)
T cd00216 141 QVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSW 219 (488)
T ss_pred CcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCcc
Confidence 11 11 12233455666665 3322110 123678999999876 875321110 010 0
Q ss_pred eeEEE--ECCEEEEEecccC----------CCCccCCeEEEEECCCCc--eEecCCCCCcc--cCCCCcccccccCCCCC
Q 043540 270 CSGVF--MDGKFYVIGGIGE----------GSSAMLTDVEMYDLETGK--WTQITDMFPAR--IGSDGVSVISAAGEAPP 333 (437)
Q Consensus 270 ~~~~~--~~g~lyv~GG~~~----------~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 333 (437)
.+.++ -++.+|+-.+... ......+.+..+|.++++ |+.-...+... .. ...+
T Consensus 220 ~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~-----------~s~p 288 (488)
T cd00216 220 ASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDG-----------PNQP 288 (488)
T ss_pred CCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCccccc-----------CCCC
Confidence 12222 2577777644210 011223479999998875 87532221111 01 0001
Q ss_pred EEEE---ECCE---EEEEeCCCCeEEEEeCCCCc--EEE
Q 043540 334 LLAV---VNNE---LYAADHEKEEVRKFDKGRKL--WRT 364 (437)
Q Consensus 334 ~~~~---~~~~---ly~~gg~~~~v~~yd~~~~~--W~~ 364 (437)
.+.. +++. +.+++.....++.+|.++.+ |+.
T Consensus 289 ~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 289 SLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISAR 327 (488)
T ss_pred eEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEe
Confidence 2221 3343 34445556679999998875 765
No 106
>PRK04792 tolB translocation protein TolB; Provisional
Probab=93.52 E-value=9.5 Score=38.61 Aligned_cols=147 Identities=13% Similarity=0.036 Sum_probs=78.1
Q ss_pred ceEEEeccCCCCeeeCCCCCCccccccCCceeEEe-CCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEE
Q 043540 149 KEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAV-GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL 227 (437)
Q Consensus 149 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 227 (437)
..++.+|..+++-..+...+..... ...+- |..|++........++|++|..+++.+.+..-... .......-
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~-----~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~-~~~p~wSp 315 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGA-----PRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAI-DTEPSWHP 315 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCC-----eeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCC-ccceEECC
Confidence 3577778877766655544321110 11222 33455443333345799999999988877542211 11111222
Q ss_pred C-CEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCce
Q 043540 228 G-EIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKW 306 (437)
Q Consensus 228 ~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W 306 (437)
+ ..|++....++ ...++.+|..+++++.+..-. .........-||+..++.+.. .....++.+|+.++..
T Consensus 316 DG~~I~f~s~~~g----~~~Iy~~dl~~g~~~~Lt~~g-~~~~~~~~SpDG~~l~~~~~~----~g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 316 DGKSLIFTSERGG----KPQIYRVNLASGKVSRLTFEG-EQNLGGSITPDGRSMIMVNRT----NGKFNIARQDLETGAM 386 (448)
T ss_pred CCCEEEEEECCCC----CceEEEEECCCCCEEEEecCC-CCCcCeeECCCCCEEEEEEec----CCceEEEEEECCCCCe
Confidence 3 35555432221 257899999999988774211 111112233355544443332 1123588899999888
Q ss_pred EecC
Q 043540 307 TQIT 310 (437)
Q Consensus 307 ~~~~ 310 (437)
+.+.
T Consensus 387 ~~lt 390 (448)
T PRK04792 387 QVLT 390 (448)
T ss_pred EEcc
Confidence 7765
No 107
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.48 E-value=5 Score=36.16 Aligned_cols=136 Identities=15% Similarity=0.148 Sum_probs=78.4
Q ss_pred ceEEEEECCCCceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEEC
Q 043540 197 NAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFMD 276 (437)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~ 276 (437)
..+-.+||..+.--+.-.-...-..-+..+.++.-+..||-+ ..+.++|.+|++=.+. +...-...-++.+|
T Consensus 39 rtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgD------k~v~vwDV~TGkv~Rr--~rgH~aqVNtV~fN 110 (307)
T KOG0316|consen 39 RTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGD------KAVQVWDVNTGKVDRR--FRGHLAQVNTVRFN 110 (307)
T ss_pred ceEEeecccccceeeeecCCCceeeeccccccccccccCCCC------ceEEEEEcccCeeeee--cccccceeeEEEec
Confidence 456677887765433211000001112334455555555532 6788999999863211 11111122344454
Q ss_pred C--EEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEE
Q 043540 277 G--KFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRK 354 (437)
Q Consensus 277 g--~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~ 354 (437)
+ .+.+.|+++ .++-.+|-.++..+.+..+...+.+ -..+.+.+...+.|.....+..
T Consensus 111 eesSVv~SgsfD-------~s~r~wDCRS~s~ePiQildea~D~--------------V~Si~v~~heIvaGS~DGtvRt 169 (307)
T KOG0316|consen 111 EESSVVASGSFD-------SSVRLWDCRSRSFEPIQILDEAKDG--------------VSSIDVAEHEIVAGSVDGTVRT 169 (307)
T ss_pred CcceEEEecccc-------ceeEEEEcccCCCCccchhhhhcCc--------------eeEEEecccEEEeeccCCcEEE
Confidence 3 456666665 3578888888888777766666655 3456677888888777777888
Q ss_pred EeCCCCc
Q 043540 355 FDKGRKL 361 (437)
Q Consensus 355 yd~~~~~ 361 (437)
||...++
T Consensus 170 ydiR~G~ 176 (307)
T KOG0316|consen 170 YDIRKGT 176 (307)
T ss_pred EEeecce
Confidence 8876654
No 108
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=93.30 E-value=9.4 Score=37.92 Aligned_cols=145 Identities=14% Similarity=-0.017 Sum_probs=78.8
Q ss_pred ceEEEEECCCCceecCCCCCCCccceeeEEEC-CEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE
Q 043540 197 NAIYRYNLLTNTWSTGMTMNTPRCLFGSASLG-EIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM 275 (437)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 275 (437)
..++++|..+++-+.+......... ....-+ ..|++....++ ...++.+|..++..+.+........ .....-
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~-~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l~~~~~~~~-~~~~s~ 287 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGA-PAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRLTNGPGIDT-EPSWSP 287 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccc-eEECCCCCEEEEEECCCC----CccEEEEECCCCCEEECCCCCCCCC-CEEECC
Confidence 5799999998876665543322221 112224 35665543222 2578999999988877754332111 111223
Q ss_pred CCE-EEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCC---CCe
Q 043540 276 DGK-FYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHE---KEE 351 (437)
Q Consensus 276 ~g~-lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~---~~~ 351 (437)
+|+ |++..... ....++.+|+.++.++.+..-..... .....-+|+.+++... ...
T Consensus 288 dg~~l~~~s~~~-----g~~~iy~~d~~~~~~~~l~~~~~~~~---------------~~~~spdg~~i~~~~~~~~~~~ 347 (417)
T TIGR02800 288 DGKSIAFTSDRG-----GSPQIYMMDADGGEVRRLTFRGGYNA---------------SPSWSPDGDLIAFVHREGGGFN 347 (417)
T ss_pred CCCEEEEEECCC-----CCceEEEEECCCCCEEEeecCCCCcc---------------CeEECCCCCEEEEEEccCCceE
Confidence 554 54443222 12368899999888876642211111 1122235555554332 237
Q ss_pred EEEEeCCCCcEEEccC
Q 043540 352 VRKFDKGRKLWRTLGR 367 (437)
Q Consensus 352 v~~yd~~~~~W~~v~~ 367 (437)
|+.+|..++.++.+..
T Consensus 348 i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 348 IAVMDLDGGGERVLTD 363 (417)
T ss_pred EEEEeCCCCCeEEccC
Confidence 9999999887776653
No 109
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=93.25 E-value=1.8 Score=41.64 Aligned_cols=105 Identities=10% Similarity=0.073 Sum_probs=67.6
Q ss_pred ceEEEEECCCC-----ceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCc-EEecCCCCcCCcCe
Q 043540 197 NAIYRYNLLTN-----TWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGT-WMPISSMHKARKMC 270 (437)
Q Consensus 197 ~~v~~yd~~t~-----~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~r~~~ 270 (437)
..+++|+...+ +++.+.....+-.-.+.+.+++++.+..| +.+.+|+...++ +.....+..+-...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g--------~~l~v~~l~~~~~l~~~~~~~~~~~i~ 133 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG--------NKLYVYDLDNSKTLLKKAFYDSPFYIT 133 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET--------TEEEEEEEETTSSEEEEEEE-BSSSEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec--------CEEEEEEccCcccchhhheecceEEEE
Confidence 56889998885 55555444444445677788999777665 678889888888 88887776665666
Q ss_pred eEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCc
Q 043540 271 SGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPA 315 (437)
Q Consensus 271 ~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~ 315 (437)
+..+.++.|++.--.. .-.+..|+.+..+-..++.-..+
T Consensus 134 sl~~~~~~I~vgD~~~------sv~~~~~~~~~~~l~~va~d~~~ 172 (321)
T PF03178_consen 134 SLSVFKNYILVGDAMK------SVSLLRYDEENNKLILVARDYQP 172 (321)
T ss_dssp EEEEETTEEEEEESSS------SEEEEEEETTTE-EEEEEEESS-
T ss_pred EEeccccEEEEEEccc------CEEEEEEEccCCEEEEEEecCCC
Confidence 6777788666542222 12356778877767777643333
No 110
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=93.22 E-value=0.062 Score=50.03 Aligned_cols=44 Identities=18% Similarity=0.284 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHhhccCc-----cchhhHHHHhHHHHHhhcCcchHHhh
Q 043540 89 IPELGRDITINCLLRCSR-----SDYGAIASLNRAFRSLIQSGELYRLR 132 (437)
Q Consensus 89 ~~~LP~dl~~~~L~rlP~-----~~~~~~~~V~k~w~sli~s~~~y~~~ 132 (437)
|..||||++..||.++=. .++.++++|||.|.-.+.+++|+..-
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~a 155 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLA 155 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHH
Confidence 357999999999987654 68999999999999999999998553
No 111
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=93.10 E-value=19 Score=40.80 Aligned_cols=169 Identities=16% Similarity=0.125 Sum_probs=88.7
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCC-------CC--------CccceeeEEE--CCEEEEEeccCCCCCCCce
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTM-------NT--------PRCLFGSASL--GEIAILAGGCDPRGKLLKS 246 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~-------~~--------~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 246 (437)
++.|||.-. ..+.+.++|+.++.=+.+..- .. -..-..+++- ++.+||.... .+.
T Consensus 635 gn~LYVaDt--~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~------~~~ 706 (1057)
T PLN02919 635 KNLLYVADT--ENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG------QHQ 706 (1057)
T ss_pred CCEEEEEeC--CCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC------CCe
Confidence 456888643 235688889877665443210 00 0011233333 6789988542 266
Q ss_pred EEEEECCCCcEEecCCC----------Cc--CCcC-eeEEEE-CC-EEEEEecccCCCCccCCeEEEEECCCCceEecCC
Q 043540 247 AELYNSITGTWMPISSM----------HK--ARKM-CSGVFM-DG-KFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITD 311 (437)
Q Consensus 247 ~~~yd~~t~~W~~~~~~----------~~--~r~~-~~~~~~-~g-~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~ 311 (437)
+++||+.++....+..- .. .... .+.++. ++ .|||....+ +.+.+||+.++..+.+..
T Consensus 707 I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n-------~~Irv~D~~tg~~~~~~g 779 (1057)
T PLN02919 707 IWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES-------SSIRALDLKTGGSRLLAG 779 (1057)
T ss_pred EEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC-------CeEEEEECCCCcEEEEEe
Confidence 88999887765543210 00 0011 122332 44 599886543 469999998766432210
Q ss_pred ----CCCc--ccCCCCcccccccCCCCCEEEE-ECCEEEEEeCCCCeEEEEeCCCCcEEEccC
Q 043540 312 ----MFPA--RIGSDGVSVISAAGEAPPLLAV-VNNELYAADHEKEEVRKFDKGRKLWRTLGR 367 (437)
Q Consensus 312 ----~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~~~v~~yd~~~~~W~~v~~ 367 (437)
.+.. ..+.............|.++++ -+|.||+.+.....|.+||+.++....+..
T Consensus 780 g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG 842 (1057)
T PLN02919 780 GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAG 842 (1057)
T ss_pred cccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEec
Confidence 0000 0000000000000011233443 467899999888999999999988876653
No 112
>PRK00178 tolB translocation protein TolB; Provisional
Probab=92.59 E-value=12 Score=37.41 Aligned_cols=145 Identities=12% Similarity=0.008 Sum_probs=76.5
Q ss_pred eEEEeccCCCCeeeCCCCCCccccccCCceeEEeCC-EEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEE-
Q 043540 150 EWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGT-ELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL- 227 (437)
Q Consensus 150 ~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~-~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~- 227 (437)
.++.+|..+++-..+...+.... ....+-++ .|++........++|++|..++..+.+..-+..-. .....-
T Consensus 224 ~l~~~~l~~g~~~~l~~~~g~~~-----~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~-~~~~spD 297 (430)
T PRK00178 224 RIFVQNLDTGRREQITNFEGLNG-----APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDT-EPFWGKD 297 (430)
T ss_pred EEEEEECCCCCEEEccCCCCCcC-----CeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcC-CeEECCC
Confidence 46677777776666554332110 01122233 44433222233589999999998887754221111 111222
Q ss_pred CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCee-EEEECC-EEEEEecccCCCCccCCeEEEEECCCCc
Q 043540 228 GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCS-GVFMDG-KFYVIGGIGEGSSAMLTDVEMYDLETGK 305 (437)
Q Consensus 228 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~-~~~~~g-~lyv~GG~~~~~~~~~~~v~~yd~~~~~ 305 (437)
+..|++.....+ ...++.+|..++.++.+.... ..... ...-+| .|++..... + ...++.+|+.++.
T Consensus 298 g~~i~f~s~~~g----~~~iy~~d~~~g~~~~lt~~~--~~~~~~~~Spdg~~i~~~~~~~---~--~~~l~~~dl~tg~ 366 (430)
T PRK00178 298 GRTLYFTSDRGG----KPQIYKVNVNGGRAERVTFVG--NYNARPRLSADGKTLVMVHRQD---G--NFHVAAQDLQRGS 366 (430)
T ss_pred CCEEEEEECCCC----CceEEEEECCCCCEEEeecCC--CCccceEECCCCCEEEEEEccC---C--ceEEEEEECCCCC
Confidence 345655532221 257889999998887764221 11111 222344 444443221 1 2358899999998
Q ss_pred eEecCC
Q 043540 306 WTQITD 311 (437)
Q Consensus 306 W~~~~~ 311 (437)
.+.+..
T Consensus 367 ~~~lt~ 372 (430)
T PRK00178 367 VRILTD 372 (430)
T ss_pred EEEccC
Confidence 887754
No 113
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=92.50 E-value=7.3 Score=43.95 Aligned_cols=161 Identities=17% Similarity=0.143 Sum_probs=88.5
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCC----------CCC---CccceeeEEE--CCEEEEEeccCCCCCCCceEE
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMT----------MNT---PRCLFGSASL--GEIAILAGGCDPRGKLLKSAE 248 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~----------~~~---~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 248 (437)
++.+||... ..+.+++||+.++....... ... -..-.++++- ++.|||+... .+.+.
T Consensus 694 ~g~LyVad~--~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~------n~~Ir 765 (1057)
T PLN02919 694 NEKVYIAMA--GQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE------SSSIR 765 (1057)
T ss_pred CCeEEEEEC--CCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC------CCeEE
Confidence 678888742 34578999987765543211 000 0111223332 3469988643 26789
Q ss_pred EEECCCCcEEecC--C--CCc--------------CC-cC-eeEE-EECCEEEEEecccCCCCccCCeEEEEECCCCceE
Q 043540 249 LYNSITGTWMPIS--S--MHK--------------AR-KM-CSGV-FMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWT 307 (437)
Q Consensus 249 ~yd~~t~~W~~~~--~--~~~--------------~r-~~-~~~~-~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~ 307 (437)
+||+.++.-+.+. . .+. .. .. .+++ .-+|.+||....+ +.+.+||+.++..+
T Consensus 766 v~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N-------~rIrviD~~tg~v~ 838 (1057)
T PLN02919 766 ALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN-------HKIKKLDPATKRVT 838 (1057)
T ss_pred EEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC-------CEEEEEECCCCeEE
Confidence 9999877643221 0 000 00 01 1222 2368899986543 56999999998877
Q ss_pred ecCCCCCcccCCCCcccccccCCCCCEEEE-ECCEEEEEeCCCCeEEEEeCCCCc
Q 043540 308 QITDMFPARIGSDGVSVISAAGEAPPLLAV-VNNELYAADHEKEEVRKFDKGRKL 361 (437)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~~~v~~yd~~~~~ 361 (437)
.+......-... +. ..+.....+..+++ -+|+||+.+...+.|.++|..+++
T Consensus 839 tiaG~G~~G~~d-G~-~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 839 TLAGTGKAGFKD-GK-ALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EEeccCCcCCCC-Cc-ccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 665321100000 00 00000012234444 378999999888999999998875
No 114
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=92.37 E-value=12 Score=36.73 Aligned_cols=193 Identities=16% Similarity=0.102 Sum_probs=100.9
Q ss_pred cCceEEEeccCCCC--eeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCC--CceecCCCCCCCccce
Q 043540 147 KLKEWEAFDPIHHR--WMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLT--NTWSTGMTMNTPRCLF 222 (437)
Q Consensus 147 ~~~~~~~yDp~~~~--W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t--~~W~~~~~~~~~r~~~ 222 (437)
....+.++|+.+.+ |..-..- .... ........+|+||+-.... .++++|..+ ..|+.-.... ++..-
T Consensus 76 ~~G~i~A~d~~~g~~~W~~~~~~---~~~~-~~~~~~~~~G~i~~g~~~g---~~y~ld~~~G~~~W~~~~~~~-~~~~~ 147 (370)
T COG1520 76 RDGNIFALNPDTGLVKWSYPLLG---AVAQ-LSGPILGSDGKIYVGSWDG---KLYALDASTGTLVWSRNVGGS-PYYAS 147 (370)
T ss_pred CCCcEEEEeCCCCcEEecccCcC---ccee-ccCceEEeCCeEEEecccc---eEEEEECCCCcEEEEEecCCC-eEEec
Confidence 34568899999886 8643221 0000 0111233467877654322 799999964 4576543332 33333
Q ss_pred eeEEECCEEEEEeccCCCCCCCceEEEEECCCCc--EEecCCC-CcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEE
Q 043540 223 GSASLGEIAILAGGCDPRGKLLKSAELYNSITGT--WMPISSM-HKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMY 299 (437)
Q Consensus 223 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~-~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~y 299 (437)
..++.++.+|+.- ....+..+|..+++ |+.-... ...+...+.+..++.+|+.... . ...++.+
T Consensus 148 ~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~-----~-~~~~~a~ 214 (370)
T COG1520 148 PPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDG-----Y-DGILYAL 214 (370)
T ss_pred CcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCC-----C-cceEEEE
Confidence 4445566676653 12567888888765 8744332 2223333333667888876321 1 1258889
Q ss_pred ECCCC--ceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCC--cEEEccC
Q 043540 300 DLETG--KWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRK--LWRTLGR 367 (437)
Q Consensus 300 d~~~~--~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~--~W~~v~~ 367 (437)
|++++ .|+.-...+..+.... ..|. .....+.+++.+|.... ...+.++|..+. .|+.-..
T Consensus 215 ~~~~G~~~w~~~~~~~~~~~~~~---~~~~---~~~~~v~v~~~~~~~~~-~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 215 NAEDGTLKWSQKVSQTIGRTAIS---TTPA---VDGGPVYVDGGVYAGSY-GGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred EccCCcEeeeeeeecccCccccc---cccc---ccCceEEECCcEEEEec-CCeEEEEEcCCCceEEEEecc
Confidence 99776 4875332222222100 0000 00234555666655543 344777777654 4876543
No 115
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=92.19 E-value=5.8 Score=39.26 Aligned_cols=259 Identities=15% Similarity=0.188 Sum_probs=123.5
Q ss_pred CCCCCCCHHHHHHHhhccCccchhhHHHHhH---HHHHhhcCcchHHhhhhcCccccEEEEEecCceEEEeccCCCCe-e
Q 043540 87 SLIPELGRDITINCLLRCSRSDYGAIASLNR---AFRSLIQSGELYRLRREMGIIEHWVYFSCKLKEWEAFDPIHHRW-M 162 (437)
Q Consensus 87 ~~~~~LP~dl~~~~L~rlP~~~~~~~~~V~k---~w~sli~s~~~y~~~~~~~~~~~~l~~~~~~~~~~~yDp~~~~W-~ 162 (437)
..-|.=|.|.+..+-.|+-+... .-+.+.| +|+..+.+..|-.=|... .......-+..||..+..- .
T Consensus 33 ~fsp~~P~d~aVt~S~rvqly~~-~~~~~~k~~srFk~~v~s~~fR~DG~Ll-------aaGD~sG~V~vfD~k~r~iLR 104 (487)
T KOG0310|consen 33 CFSPKHPYDFAVTSSVRVQLYSS-VTRSVRKTFSRFKDVVYSVDFRSDGRLL-------AAGDESGHVKVFDMKSRVILR 104 (487)
T ss_pred ecCCCCCCceEEecccEEEEEec-chhhhhhhHHhhccceeEEEeecCCeEE-------EccCCcCcEEEeccccHHHHH
Confidence 33456688888888888765432 2234444 355555444433222111 1111223467788443211 0
Q ss_pred eCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccce---eeEEECCEEEEEeccCC
Q 043540 163 HLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLF---GSASLGEIAILAGGCDP 239 (437)
Q Consensus 163 ~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~---~~~~~~~~iyv~GG~~~ 239 (437)
.+..-..|.+.. .-...++.++++|++... +..+|..+..- ...+...-.+. +....++.|++.||+|+
T Consensus 105 ~~~ah~apv~~~----~f~~~d~t~l~s~sDd~v--~k~~d~s~a~v--~~~l~~htDYVR~g~~~~~~~hivvtGsYDg 176 (487)
T KOG0310|consen 105 QLYAHQAPVHVT----KFSPQDNTMLVSGSDDKV--VKYWDLSTAYV--QAELSGHTDYVRCGDISPANDHIVVTGSYDG 176 (487)
T ss_pred HHhhccCceeEE----EecccCCeEEEecCCCce--EEEEEcCCcEE--EEEecCCcceeEeeccccCCCeEEEecCCCc
Confidence 111111111100 002357889999875443 33445544441 11222111111 22334678999999874
Q ss_pred CCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE-CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccC
Q 043540 240 RGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM-DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIG 318 (437)
Q Consensus 240 ~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~ 318 (437)
.+-.||..+.+ ..+-++.....--.++++ .|.+.+..|-+ .+-++|+.++. .++..+.+
T Consensus 177 ------~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs~iasAgGn--------~vkVWDl~~G~-----qll~~~~~ 236 (487)
T KOG0310|consen 177 ------KVRLWDTRSLT-SRVVELNHGCPVESVLALPSGSLIASAGGN--------SVKVWDLTTGG-----QLLTSMFN 236 (487)
T ss_pred ------eEEEEEeccCC-ceeEEecCCCceeeEEEcCCCCEEEEcCCC--------eEEEEEecCCc-----eehhhhhc
Confidence 46778887764 333333333222234444 33555543322 37788877542 12222222
Q ss_pred CCCcccccccCCCCCEEEE-ECCEEEEEeCCCCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCCC
Q 043540 319 SDGVSVISAAGEAPPLLAV-VNNELYAADHEKEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPR 396 (437)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~ 396 (437)
|.=.+ .++.. -++.-.+-|+-...+.+|| +..|+.+-.+..+..-+ ..+ +.-+|+-.++|+.+
T Consensus 237 H~KtV---------TcL~l~s~~~rLlS~sLD~~VKVfd--~t~~Kvv~s~~~~~pvL---sia-vs~dd~t~viGmsn 300 (487)
T KOG0310|consen 237 HNKTV---------TCLRLASDSTRLLSGSLDRHVKVFD--TTNYKVVHSWKYPGPVL---SIA-VSPDDQTVVIGMSN 300 (487)
T ss_pred ccceE---------EEEEeecCCceEeecccccceEEEE--ccceEEEEeeeccccee---eEE-ecCCCceEEEeccc
Confidence 10000 11111 2344444455566799999 55688876554443321 222 24477888898765
No 116
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=92.01 E-value=14 Score=36.71 Aligned_cols=108 Identities=13% Similarity=0.202 Sum_probs=58.5
Q ss_pred EEeCCEEEEEcCccCCceEEEEECCCCc-eecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEe
Q 043540 181 LAVGTELLVFGKEVHGNAIYRYNLLTNT-WSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMP 259 (437)
Q Consensus 181 ~~~~~~lyv~GG~~~~~~v~~yd~~t~~-W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 259 (437)
+..+|+|++.|+.. ..+-+||..+.. -+.+..-..|-...--...++.+++.|+-+ ..+..+|..+.. .
T Consensus 76 fR~DG~LlaaGD~s--G~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd------~v~k~~d~s~a~-v- 145 (487)
T KOG0310|consen 76 FRSDGRLLAAGDES--GHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDD------KVVKYWDLSTAY-V- 145 (487)
T ss_pred eecCCeEEEccCCc--CcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCC------ceEEEEEcCCcE-E-
Confidence 44579999998643 468889944411 111111111211112234688899887743 233445555544 1
Q ss_pred cCCCCcCCc--Ce-eEEEECCEEEEEecccCCCCccCCeEEEEECCCCc
Q 043540 260 ISSMHKARK--MC-SGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGK 305 (437)
Q Consensus 260 ~~~~~~~r~--~~-~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~ 305 (437)
...+...-. .+ ...-.++.|.+.||++ ..+-.||+.+.+
T Consensus 146 ~~~l~~htDYVR~g~~~~~~~hivvtGsYD-------g~vrl~DtR~~~ 187 (487)
T KOG0310|consen 146 QAELSGHTDYVRCGDISPANDHIVVTGSYD-------GKVRLWDTRSLT 187 (487)
T ss_pred EEEecCCcceeEeeccccCCCeEEEecCCC-------ceEEEEEeccCC
Confidence 112221111 11 2223478899999998 358889988774
No 117
>PRK04043 tolB translocation protein TolB; Provisional
Probab=91.87 E-value=15 Score=36.81 Aligned_cols=144 Identities=14% Similarity=0.120 Sum_probs=82.9
Q ss_pred CceEEEEECCCCceecCCCCCCCccceeeEEECC-EEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEE
Q 043540 196 GNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGE-IAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVF 274 (437)
Q Consensus 196 ~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~ 274 (437)
..++|++|+.+++=+.+...+.. ......+-++ +|.+.-..++ ...++++|..++.++.+...+.. .......
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g~-~~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~LT~~~~~-d~~p~~S 285 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQGM-LVVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQITNYPGI-DVNGNFV 285 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCCc-EEeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEEcccCCCc-cCccEEC
Confidence 45899999999877776542211 1112223344 5655543322 26899999999999988655431 1111222
Q ss_pred ECC-EEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCE-EEEEeCC----
Q 043540 275 MDG-KFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNE-LYAADHE---- 348 (437)
Q Consensus 275 ~~g-~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ly~~gg~---- 348 (437)
-|| +||+..... ....++.+|+.+++.+++..- +... . ...-+|+ |......
T Consensus 286 PDG~~I~F~Sdr~-----g~~~Iy~~dl~~g~~~rlt~~--g~~~--------------~-~~SPDG~~Ia~~~~~~~~~ 343 (419)
T PRK04043 286 EDDKRIVFVSDRL-----GYPNIFMKKLNSGSVEQVVFH--GKNN--------------S-SVSTYKNYIVYSSRETNNE 343 (419)
T ss_pred CCCCEEEEEECCC-----CCceEEEEECCCCCeEeCccC--CCcC--------------c-eECCCCCEEEEEEcCCCcc
Confidence 345 577664332 224699999999888766421 1111 1 1222333 3333211
Q ss_pred ----CCeEEEEeCCCCcEEEccC
Q 043540 349 ----KEEVRKFDKGRKLWRTLGR 367 (437)
Q Consensus 349 ----~~~v~~yd~~~~~W~~v~~ 367 (437)
...|+.+|++++.++.+..
T Consensus 344 ~~~~~~~I~v~d~~~g~~~~LT~ 366 (419)
T PRK04043 344 FGKNTFNLYLISTNSDYIRRLTA 366 (419)
T ss_pred cCCCCcEEEEEECCCCCeEECCC
Confidence 2479999999999988865
No 118
>PLN00181 protein SPA1-RELATED; Provisional
Probab=91.78 E-value=18 Score=39.59 Aligned_cols=131 Identities=15% Similarity=0.280 Sum_probs=67.4
Q ss_pred CceEEEEECCCCceecCCCCC-CCccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeE
Q 043540 196 GNAIYRYNLLTNTWSTGMTMN-TPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSG 272 (437)
Q Consensus 196 ~~~v~~yd~~t~~W~~~~~~~-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~ 272 (437)
...+.+||..+++-.. .+. ....-.+++.. ++.+++.||.+ ..+.+||..++.-. ..+.........
T Consensus 554 Dg~v~lWd~~~~~~~~--~~~~H~~~V~~l~~~p~~~~~L~Sgs~D------g~v~iWd~~~~~~~--~~~~~~~~v~~v 623 (793)
T PLN00181 554 EGVVQVWDVARSQLVT--EMKEHEKRVWSIDYSSADPTLLASGSDD------GSVKLWSINQGVSI--GTIKTKANICCV 623 (793)
T ss_pred CCeEEEEECCCCeEEE--EecCCCCCEEEEEEcCCCCCEEEEEcCC------CEEEEEECCCCcEE--EEEecCCCeEEE
Confidence 3468888987654321 111 11111223332 45677777754 45788888765421 111111111222
Q ss_pred EE--ECCEEEEEecccCCCCccCCeEEEEECCCCc--eEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCC
Q 043540 273 VF--MDGKFYVIGGIGEGSSAMLTDVEMYDLETGK--WTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHE 348 (437)
Q Consensus 273 ~~--~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~ 348 (437)
.+ -++++++.|+.+ ..+..||+.+.. ...+. +|...+ ..+...++..++.++.
T Consensus 624 ~~~~~~g~~latgs~d-------g~I~iwD~~~~~~~~~~~~-------~h~~~V---------~~v~f~~~~~lvs~s~ 680 (793)
T PLN00181 624 QFPSESGRSLAFGSAD-------HKVYYYDLRNPKLPLCTMI-------GHSKTV---------SYVRFVDSSTLVSSST 680 (793)
T ss_pred EEeCCCCCEEEEEeCC-------CeEEEEECCCCCccceEec-------CCCCCE---------EEEEEeCCCEEEEEEC
Confidence 22 257788887765 358899987642 11111 110000 1233346666777767
Q ss_pred CCeEEEEeCCC
Q 043540 349 KEEVRKFDKGR 359 (437)
Q Consensus 349 ~~~v~~yd~~~ 359 (437)
.+.|.+||..+
T Consensus 681 D~~ikiWd~~~ 691 (793)
T PLN00181 681 DNTLKLWDLSM 691 (793)
T ss_pred CCEEEEEeCCC
Confidence 77899999864
No 119
>PRK03629 tolB translocation protein TolB; Provisional
Probab=91.74 E-value=16 Score=36.77 Aligned_cols=147 Identities=10% Similarity=-0.045 Sum_probs=77.6
Q ss_pred CceEEEEECCCCceecCCCCCCCccceeeEEEC-CEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEE
Q 043540 196 GNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLG-EIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVF 274 (437)
Q Consensus 196 ~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~ 274 (437)
...++++|..+++-+.+...+..-.. ...+-+ .+|++....++ ...++++|..+++.+.+..-... .......
T Consensus 222 ~~~i~i~dl~~G~~~~l~~~~~~~~~-~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~~~~~-~~~~~wS 295 (429)
T PRK03629 222 RSALVIQTLANGAVRQVASFPRHNGA-PAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDGRSN-NTEPTWF 295 (429)
T ss_pred CcEEEEEECCCCCeEEccCCCCCcCC-eEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccCCCCC-cCceEEC
Confidence 35789999988876666544322111 112223 45655533222 24689999999888777543321 1111222
Q ss_pred ECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCE-EEEEeCC--CCe
Q 043540 275 MDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNE-LYAADHE--KEE 351 (437)
Q Consensus 275 ~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ly~~gg~--~~~ 351 (437)
-||+..++.... .....++.+|+.++.-+.+...... .. .....-+|+ |++.... ...
T Consensus 296 PDG~~I~f~s~~----~g~~~Iy~~d~~~g~~~~lt~~~~~-~~--------------~~~~SpDG~~Ia~~~~~~g~~~ 356 (429)
T PRK03629 296 PDSQNLAYTSDQ----AGRPQVYKVNINGGAPQRITWEGSQ-NQ--------------DADVSSDGKFMVMVSSNGGQQH 356 (429)
T ss_pred CCCCEEEEEeCC----CCCceEEEEECCCCCeEEeecCCCC-cc--------------CEEECCCCCEEEEEEccCCCce
Confidence 255533332221 1123688889988776665321111 11 112222444 4443322 346
Q ss_pred EEEEeCCCCcEEEccC
Q 043540 352 VRKFDKGRKLWRTLGR 367 (437)
Q Consensus 352 v~~yd~~~~~W~~v~~ 367 (437)
++.+|+.+++++.+..
T Consensus 357 I~~~dl~~g~~~~Lt~ 372 (429)
T PRK03629 357 IAKQDLATGGVQVLTD 372 (429)
T ss_pred EEEEECCCCCeEEeCC
Confidence 8999999999888763
No 120
>smart00284 OLF Olfactomedin-like domains.
Probab=91.62 E-value=11 Score=34.77 Aligned_cols=181 Identities=10% Similarity=-0.004 Sum_probs=98.6
Q ss_pred CCEEEEEcCc-cCCceEEEEECC----CCceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEE
Q 043540 184 GTELLVFGKE-VHGNAIYRYNLL----TNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWM 258 (437)
Q Consensus 184 ~~~lyv~GG~-~~~~~v~~yd~~----t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~ 258 (437)
.+++|++.+. ...+.++.|... .+++.+.-.+|.+-.+.+.+++++.+|.--. ....+..||..+++=.
T Consensus 34 ~~~~wv~~~~~~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~------~s~~iiKydL~t~~v~ 107 (255)
T smart00284 34 KSLYWYMPLNTRVLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKF------NSHDICRFDLTTETYQ 107 (255)
T ss_pred CceEEEEccccCCCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEec------CCccEEEEECCCCcEE
Confidence 4677777553 233556666432 3344333456777778889999999998643 2367999999998854
Q ss_pred ecCCCCcC----Cc-----Cee---EEEECCEEEEEecccCCCCccCCeEEEEECCCC----ceEecCCCCCcccCCCCc
Q 043540 259 PISSMHKA----RK-----MCS---GVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETG----KWTQITDMFPARIGSDGV 322 (437)
Q Consensus 259 ~~~~~~~~----r~-----~~~---~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~----~W~~~~~~~~~~~~~~~~ 322 (437)
....+|.+ +. .++ .++-.+-|.||-.... ....-.+-..|+.+- +|.. ..+....+
T Consensus 108 ~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~--~~g~ivvSkLnp~tL~ve~tW~T--~~~k~sa~---- 179 (255)
T smart00284 108 KEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQ--NAGKIVISKLNPATLTIENTWIT--TYNKRSAS---- 179 (255)
T ss_pred EEEecCccccccccccccCCCccEEEEEcCCceEEEEeccC--CCCCEEEEeeCcccceEEEEEEc--CCCccccc----
Confidence 33334422 11 111 2233345666643321 111112345666554 4544 22222222
Q ss_pred ccccccCCCCCEEEEECCEEEEEeC----CCCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEe---CCEEEEEc
Q 043540 323 SVISAAGEAPPLLAVVNNELYAADH----EKEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRAC---GDQLIVIG 393 (437)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~ly~~gg----~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~---~~~l~v~G 393 (437)
-+.++=|.||++.. ...-.++||..+++=.. ..+|..... -.+++.-+ +.+||+.-
T Consensus 180 -----------naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~-~~i~f~n~y---~~~s~l~YNP~d~~LY~wd 242 (255)
T smart00284 180 -----------NAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGH-LDIPFENMY---EYISMLDYNPNDRKLYAWN 242 (255)
T ss_pred -----------ccEEEeeEEEEEccCCCCCcEEEEEEECCCCccce-eeeeecccc---ccceeceeCCCCCeEEEEe
Confidence 24666789999963 23347899999876333 334443321 12334333 46888873
No 121
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=91.45 E-value=15 Score=35.96 Aligned_cols=39 Identities=15% Similarity=0.115 Sum_probs=34.5
Q ss_pred CCCCCCCHHHHHHHhhccCc-cchhhHHHHhHHHHHhhcC
Q 043540 87 SLIPELGRDITINCLLRCSR-SDYGAIASLNRAFRSLIQS 125 (437)
Q Consensus 87 ~~~~~LP~dl~~~~L~rlP~-~~~~~~~~V~k~w~sli~s 125 (437)
..|.+||+||+..|..|||- .++.++|+||++||+.+..
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 35899999999999999965 4799999999999998764
No 122
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.19 E-value=10 Score=33.65 Aligned_cols=186 Identities=16% Similarity=0.094 Sum_probs=107.7
Q ss_pred eEEeCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCc-cceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEE
Q 043540 180 SLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPR-CLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWM 258 (437)
Q Consensus 180 ~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~ 258 (437)
+...++++|.--|....+.+.++|..+++=..-.+++.++ ..-+.+.+++.+|..-=.+ .-.+.||+.+ .+
T Consensus 51 L~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~e------gvaf~~d~~t--~~ 122 (262)
T COG3823 51 LEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKE------GVAFKYDADT--LE 122 (262)
T ss_pred eeeeCCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEecc------ceeEEEChHH--hh
Confidence 4566788888767666678999999866532222232233 3447788899999883211 3456777654 45
Q ss_pred ecCCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCce---Eec--CCCCCcccCCCCcccccccCCCCC
Q 043540 259 PISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKW---TQI--TDMFPARIGSDGVSVISAAGEAPP 333 (437)
Q Consensus 259 ~~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W---~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 333 (437)
.+...+....+.+.+.-+..|...-|.. .+..-||++=.= ..+ ...|...-+
T Consensus 123 ~lg~~~y~GeGWgLt~d~~~LimsdGsa--------tL~frdP~tfa~~~~v~VT~~g~pv~~LN--------------- 179 (262)
T COG3823 123 ELGRFSYEGEGWGLTSDDKNLIMSDGSA--------TLQFRDPKTFAELDTVQVTDDGVPVSKLN--------------- 179 (262)
T ss_pred hhcccccCCcceeeecCCcceEeeCCce--------EEEecCHHHhhhcceEEEEECCeeccccc---------------
Confidence 5666665555666666666655554433 233345543110 000 111111111
Q ss_pred EEEEECCEEEEEeCCCCeEEEEeCCCCc---EEEccCCCCcccCCCc-----ccEEEEEeCCEEEEEcCCC
Q 043540 334 LLAVVNNELYAADHEKEEVRKFDKGRKL---WRTLGRLPEQASSMNG-----WGLAFRACGDQLIVIGGPR 396 (437)
Q Consensus 334 ~~~~~~~~ly~~gg~~~~v~~yd~~~~~---W~~v~~lp~~~~~~~~-----~~~a~~~~~~~l~v~GG~~ 396 (437)
-+-.++|.+|+==.....|.+.||++++ |..+..++........ -|.|...-+|++|+.|-.-
T Consensus 180 ELE~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~w 250 (262)
T COG3823 180 ELEWVDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKLW 250 (262)
T ss_pred ceeeeccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCcC
Confidence 1344677777644457889999999975 8888877654322111 1456656678999998543
No 123
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.67 E-value=13 Score=33.83 Aligned_cols=102 Identities=17% Similarity=0.318 Sum_probs=57.6
Q ss_pred EEEEEeccCCCCCCCceEEEEECCCCcEEecC----------------CCCcCCcCeeEEEECCEEEEEecccCCCCccC
Q 043540 230 IAILAGGCDPRGKLLKSAELYNSITGTWMPIS----------------SMHKARKMCSGVFMDGKFYVIGGIGEGSSAML 293 (437)
Q Consensus 230 ~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~----------------~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~ 293 (437)
+-++.||+|. +-.+|.||. ++|..-. ....++...+.+..||++++.
T Consensus 176 krlvSgGcDn----~VkiW~~~~--~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIw----------- 238 (299)
T KOG1332|consen 176 KRLVSGGCDN----LVKIWKFDS--DSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIW----------- 238 (299)
T ss_pred ceeeccCCcc----ceeeeecCC--cchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEE-----------
Confidence 5578899863 244555554 4665322 222344444445556665554
Q ss_pred CeEEEEECCCCceEec--CCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCC-CcEEEccC
Q 043540 294 TDVEMYDLETGKWTQI--TDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGR-KLWRTLGR 367 (437)
Q Consensus 294 ~~v~~yd~~~~~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~-~~W~~v~~ 367 (437)
.-+.+.+.|+.- .+.|.... +..-.+-|.+..++|..+.+..+-... ++|.+++.
T Consensus 239 ----t~~~e~e~wk~tll~~f~~~~w---------------~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 239 ----TKDEEYEPWKKTLLEEFPDVVW---------------RVSWSLSGNILAVSGGDNKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred ----EecCccCcccccccccCCcceE---------------EEEEeccccEEEEecCCcEEEEEEeCCCCcEEEccc
Confidence 233455667543 33333322 233455677777777677787777665 48999874
No 124
>PRK05137 tolB translocation protein TolB; Provisional
Probab=90.66 E-value=20 Score=36.02 Aligned_cols=147 Identities=10% Similarity=-0.053 Sum_probs=76.0
Q ss_pred ceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCC-EEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEE
Q 043540 149 KEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGT-ELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL 227 (437)
Q Consensus 149 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~-~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 227 (437)
..++.+|+.+++...+...+..... ...+-++ .|++........++|++|..++.-+.+..-+..- ......-
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~~~~-----~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~-~~~~~sp 299 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGMTFA-----PRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAID-TSPSYSP 299 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCcccC-----cEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCcc-CceeEcC
Confidence 4577888887777666544432111 1123334 4444333333467999999998877775433211 1122222
Q ss_pred CC-EEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCce
Q 043540 228 GE-IAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKW 306 (437)
Q Consensus 228 ~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W 306 (437)
++ +|++..... + ...++++|..++..+.+.... .........-+|+..++.... . ....+..+|+.++..
T Consensus 300 DG~~i~f~s~~~--g--~~~Iy~~d~~g~~~~~lt~~~-~~~~~~~~SpdG~~ia~~~~~--~--~~~~i~~~d~~~~~~ 370 (435)
T PRK05137 300 DGSQIVFESDRS--G--SPQLYVMNADGSNPRRISFGG-GRYSTPVWSPRGDLIAFTKQG--G--GQFSIGVMKPDGSGE 370 (435)
T ss_pred CCCEEEEEECCC--C--CCeEEEEECCCCCeEEeecCC-CcccCeEECCCCCEEEEEEcC--C--CceEEEEEECCCCce
Confidence 34 454433221 1 257899998887777664321 111122223355443332222 1 123688899877766
Q ss_pred EecC
Q 043540 307 TQIT 310 (437)
Q Consensus 307 ~~~~ 310 (437)
..+.
T Consensus 371 ~~lt 374 (435)
T PRK05137 371 RILT 374 (435)
T ss_pred Eecc
Confidence 5554
No 125
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=90.37 E-value=15 Score=33.99 Aligned_cols=180 Identities=15% Similarity=0.097 Sum_probs=101.0
Q ss_pred CCEEEEEcCccCCceEEEEECC-----CCceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcE-
Q 043540 184 GTELLVFGKEVHGNAIYRYNLL-----TNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTW- 257 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~-----t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W- 257 (437)
.+++|++.+.... .++.|.-. .++..+.-.+|.+-.+.+.+++++.+|---. ....+..||..+++=
T Consensus 30 ~~~iy~~~~~~~~-~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~------~s~~IvkydL~t~~v~ 102 (250)
T PF02191_consen 30 SEKIYVTSGFSGN-TVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKY------NSRNIVKYDLTTRSVV 102 (250)
T ss_pred CCCEEEECccCCC-EEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEec------CCceEEEEECcCCcEE
Confidence 4677888764333 66666443 2233333346666777788899999987643 248899999999874
Q ss_pred --EecCCCCcC-C-----cCe---eEEEECCEEEEEecccCCCCccCCeEEEEECCCC----ceEecCCCCCcccCCCCc
Q 043540 258 --MPISSMHKA-R-----KMC---SGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETG----KWTQITDMFPARIGSDGV 322 (437)
Q Consensus 258 --~~~~~~~~~-r-----~~~---~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~----~W~~~~~~~~~~~~~~~~ 322 (437)
..++..... + ..+ -.++-..-|+||-.....++ .-.+-..|+.+- +|.. ..+....+
T Consensus 103 ~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g--~ivvskld~~tL~v~~tw~T--~~~k~~~~---- 174 (250)
T PF02191_consen 103 ARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG--NIVVSKLDPETLSVEQTWNT--SYPKRSAG---- 174 (250)
T ss_pred EEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC--cEEEEeeCcccCceEEEEEe--ccCchhhc----
Confidence 445432111 1 111 22333455777755441111 122445566543 4543 23333222
Q ss_pred ccccccCCCCCEEEEECCEEEEEeCC----CCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEe---CCEEEEEc
Q 043540 323 SVISAAGEAPPLLAVVNNELYAADHE----KEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRAC---GDQLIVIG 393 (437)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~ly~~gg~----~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~---~~~l~v~G 393 (437)
-+.++-|.||++... ..-.++||..+++=..+ .++...... ..+.+.+ +.+||+.-
T Consensus 175 -----------naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~-~i~f~~~~~---~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 175 -----------NAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDV-SIPFPNPYG---NISMLSYNPRDKKLYAWD 237 (250)
T ss_pred -----------ceeeEeeEEEEEEECCCCCcEEEEEEECCCCceece-eeeeccccC---ceEeeeECCCCCeEEEEE
Confidence 256677999999743 33468999998876644 344333211 2444444 46899874
No 126
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=90.16 E-value=16 Score=34.19 Aligned_cols=131 Identities=15% Similarity=0.130 Sum_probs=71.3
Q ss_pred eEEEEECCCCceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEECC
Q 043540 198 AIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFMDG 277 (437)
Q Consensus 198 ~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~g 277 (437)
.+-.||..++.-+.. +...-....++..+..-.+.||.+ ..+-+||..++.=..+..-..+-....-. ...
T Consensus 36 slrlYdv~~~~l~~~--~~~~~plL~c~F~d~~~~~~G~~d------g~vr~~Dln~~~~~~igth~~~i~ci~~~-~~~ 106 (323)
T KOG1036|consen 36 SLRLYDVPANSLKLK--FKHGAPLLDCAFADESTIVTGGLD------GQVRRYDLNTGNEDQIGTHDEGIRCIEYS-YEV 106 (323)
T ss_pred cEEEEeccchhhhhh--eecCCceeeeeccCCceEEEeccC------ceEEEEEecCCcceeeccCCCceEEEEee-ccC
Confidence 466677777632211 111112234556666666777765 56789999998766665433322111111 223
Q ss_pred EEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeC
Q 043540 278 KFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDK 357 (437)
Q Consensus 278 ~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~ 357 (437)
...|.||++ ..+..+|+....=.. ........ .+..+.+...++|.....+.+||.
T Consensus 107 ~~vIsgsWD-------~~ik~wD~R~~~~~~-~~d~~kkV----------------y~~~v~g~~LvVg~~~r~v~iyDL 162 (323)
T KOG1036|consen 107 GCVISGSWD-------KTIKFWDPRNKVVVG-TFDQGKKV----------------YCMDVSGNRLVVGTSDRKVLIYDL 162 (323)
T ss_pred CeEEEcccC-------ccEEEEecccccccc-ccccCceE----------------EEEeccCCEEEEeecCceEEEEEc
Confidence 445677776 357788876511000 00011111 133456666677778889999999
Q ss_pred CCCc
Q 043540 358 GRKL 361 (437)
Q Consensus 358 ~~~~ 361 (437)
.+..
T Consensus 163 Rn~~ 166 (323)
T KOG1036|consen 163 RNLD 166 (323)
T ss_pred cccc
Confidence 7753
No 127
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=90.00 E-value=22 Score=35.46 Aligned_cols=78 Identities=13% Similarity=0.127 Sum_probs=47.5
Q ss_pred EEeCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEec
Q 043540 181 LAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPI 260 (437)
Q Consensus 181 ~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 260 (437)
+.+++.+|.+........+|.-|..-+.-++-.... -++..-+.-+++-+|+. .-.+++.|||+|+.-+++
T Consensus 232 mIV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFt--dYY~R~~nsDGkrIvFq-------~~GdIylydP~td~lekl 302 (668)
T COG4946 232 MIVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFT--DYYPRNANSDGKRIVFQ-------NAGDIYLYDPETDSLEKL 302 (668)
T ss_pred eEEcceEEEEecccCccceEEeccCCchhhhcCCch--hccccccCCCCcEEEEe-------cCCcEEEeCCCcCcceee
Confidence 567899998865444456777777666555544322 12222233456555552 125789999999998877
Q ss_pred C-CCCcCC
Q 043540 261 S-SMHKAR 267 (437)
Q Consensus 261 ~-~~~~~r 267 (437)
. .+|..|
T Consensus 303 dI~lpl~r 310 (668)
T COG4946 303 DIGLPLDR 310 (668)
T ss_pred ecCCcccc
Confidence 4 345443
No 128
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=89.89 E-value=33 Score=37.27 Aligned_cols=36 Identities=14% Similarity=0.208 Sum_probs=25.6
Q ss_pred eeeEEECCEEEEEeccCCCCCCCceEEEEECCCCc--EEecCCCC
Q 043540 222 FGSASLGEIAILAGGCDPRGKLLKSAELYNSITGT--WMPISSMH 264 (437)
Q Consensus 222 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~ 264 (437)
.+-+++++.||+... .+.+..+|..|++ |+.-+..+
T Consensus 188 ~TPlvvgg~lYv~t~-------~~~V~ALDa~TGk~lW~~d~~~~ 225 (764)
T TIGR03074 188 ATPLKVGDTLYLCTP-------HNKVIALDAATGKEKWKFDPKLK 225 (764)
T ss_pred cCCEEECCEEEEECC-------CCeEEEEECCCCcEEEEEcCCCC
Confidence 345678999999843 2568888988876 88665443
No 129
>PRK04922 tolB translocation protein TolB; Provisional
Probab=89.45 E-value=25 Score=35.32 Aligned_cols=145 Identities=14% Similarity=0.145 Sum_probs=75.6
Q ss_pred ceEEEEECCCCcEEecCCCCcCCcCeeEEEECC-EEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcc
Q 043540 245 KSAELYNSITGTWMPISSMHKARKMCSGVFMDG-KFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVS 323 (437)
Q Consensus 245 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~g-~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~ 323 (437)
..++++|..+++-+.+...+.. .......-|| +|++..... + ...++.+|+.++.-+.+..-......
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g~-~~~~~~SpDG~~l~~~~s~~-g----~~~Iy~~d~~~g~~~~lt~~~~~~~~----- 296 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRGI-NGAPSFSPDGRRLALTLSRD-G----NPEIYVMDLGSRQLTRLTNHFGIDTE----- 296 (433)
T ss_pred cEEEEEECCCCCEEEeccCCCC-ccCceECCCCCEEEEEEeCC-C----CceEEEEECCCCCeEECccCCCCccc-----
Confidence 6789999999888777655421 1122223355 455443222 1 24689999998877666432211111
Q ss_pred cccccCCCCCEEEEECCE-EEEEeCC--CCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCC
Q 043540 324 VISAAGEAPPLLAVVNNE-LYAADHE--KEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGG 400 (437)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~-ly~~gg~--~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~ 400 (437)
....-+|+ |+..... ...++.+|..+++.+.+..-... . ...++...++.|++..+. +
T Consensus 297 ----------~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~-~----~~~~~SpDG~~Ia~~~~~----~ 357 (433)
T PRK04922 297 ----------PTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNY-N----ARASVSPDGKKIAMVHGS----G 357 (433)
T ss_pred ----------eEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCC-c----cCEEECCCCCEEEEEECC----C
Confidence 12222444 4443322 34689999988888776521111 0 123443445666666442 1
Q ss_pred CeeEEEeeecCCCCCCceecC
Q 043540 401 GIVELNGWVPDEGPPHWKLLA 421 (437)
Q Consensus 401 ~~~~~~~~~~d~~~~~W~~l~ 421 (437)
+.. .++.+|..+.+.+.+.
T Consensus 358 ~~~--~I~v~d~~~g~~~~Lt 376 (433)
T PRK04922 358 GQY--RIAVMDLSTGSVRTLT 376 (433)
T ss_pred Cce--eEEEEECCCCCeEECC
Confidence 222 3444555555555553
No 130
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=89.39 E-value=25 Score=35.14 Aligned_cols=210 Identities=13% Similarity=0.088 Sum_probs=108.0
Q ss_pred cCceEEEeccCCCCeeeCCC-CCCccc-----cccC---CceeEEeCCEEEEEcCccCCceEEEEECCCCceecCCCCCC
Q 043540 147 KLKEWEAFDPIHHRWMHLPP-MNASDC-----FMCA---DKESLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNT 217 (437)
Q Consensus 147 ~~~~~~~yDp~~~~W~~l~~-~p~~~~-----~~~~---~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~ 217 (437)
...+.+.|||.+.+-.++.- +|..|. +... ..--+.++|.++++= .....++.++..+---+++.-..
T Consensus 285 ~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~V---SRGkaFi~~~~~~~~iqv~~~~~ 361 (668)
T COG4946 285 NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALV---SRGKAFIMRPWDGYSIQVGKKGG 361 (668)
T ss_pred cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEE---ecCcEEEECCCCCeeEEcCCCCc
Confidence 34678999999998876542 132211 1000 000123344444431 22356666665443333332222
Q ss_pred CccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEE
Q 043540 218 PRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVE 297 (437)
Q Consensus 218 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~ 297 (437)
-|+ .-...+++-.|+|-.++ ..+.+||..+..-+.+.. +..+...-.+.-+||..+++... -.++
T Consensus 362 VrY--~r~~~~~e~~vigt~dg-----D~l~iyd~~~~e~kr~e~-~lg~I~av~vs~dGK~~vvaNdr-------~el~ 426 (668)
T COG4946 362 VRY--RRIQVDPEGDVIGTNDG-----DKLGIYDKDGGEVKRIEK-DLGNIEAVKVSPDGKKVVVANDR-------FELW 426 (668)
T ss_pred eEE--EEEccCCcceEEeccCC-----ceEEEEecCCceEEEeeC-CccceEEEEEcCCCcEEEEEcCc-------eEEE
Confidence 222 22223444677766543 468999999987665532 22333333444577877765433 3589
Q ss_pred EEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE-CCEEEEE----eCCCCeEEEEeCCCCcEEEccCCCCcc
Q 043540 298 MYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV-NNELYAA----DHEKEEVRKFDKGRKLWRTLGRLPEQA 372 (437)
Q Consensus 298 ~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ly~~----gg~~~~v~~yd~~~~~W~~v~~lp~~~ 372 (437)
++|++++.=+.+..-.....- ..+.. +.+.++. |+....|..||..+++-..+.. |...
T Consensus 427 vididngnv~~idkS~~~lIt---------------df~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~ 490 (668)
T COG4946 427 VIDIDNGNVRLIDKSEYGLIT---------------DFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAY 490 (668)
T ss_pred EEEecCCCeeEecccccceeE---------------EEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-Cccc
Confidence 999999988777532211111 01111 3444433 3345678888888876665542 2111
Q ss_pred cCCCcccEEEEEeCCEEEEEcC
Q 043540 373 SSMNGWGLAFRACGDQLIVIGG 394 (437)
Q Consensus 373 ~~~~~~~~a~~~~~~~l~v~GG 394 (437)
-|..|+-+-+..||.+.-
T Consensus 491 ----DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 491 ----DFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred ----ccCcccCCCCcEEEEEec
Confidence 134445455566666653
No 131
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=89.22 E-value=2.2 Score=39.36 Aligned_cols=75 Identities=21% Similarity=0.263 Sum_probs=49.5
Q ss_pred CCEEEEEecccCCCCccCCeEEEEEC-----CCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCC
Q 043540 276 DGKFYVIGGIGEGSSAMLTDVEMYDL-----ETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKE 350 (437)
Q Consensus 276 ~g~lyv~GG~~~~~~~~~~~v~~yd~-----~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~ 350 (437)
++++|++.+... +.+..|.. ..+.....-.+|.+..+ .+.++.||.||.--....
T Consensus 30 ~~~iy~~~~~~~------~~v~ey~~~~~f~~~~~~~~~~~Lp~~~~G--------------tG~vVYngslYY~~~~s~ 89 (250)
T PF02191_consen 30 SEKIYVTSGFSG------NTVYEYRNYEDFLRNGRSSRTYKLPYPWQG--------------TGHVVYNGSLYYNKYNSR 89 (250)
T ss_pred CCCEEEECccCC------CEEEEEcCHhHHhhcCCCceEEEEeceecc--------------CCeEEECCcEEEEecCCc
Confidence 568888877651 14555533 23334444445555555 568899999999877889
Q ss_pred eEEEEeCCCCcEEEccCCCC
Q 043540 351 EVRKFDKGRKLWRTLGRLPE 370 (437)
Q Consensus 351 ~v~~yd~~~~~W~~v~~lp~ 370 (437)
.|.+||+.++.=..-..||.
T Consensus 90 ~IvkydL~t~~v~~~~~L~~ 109 (250)
T PF02191_consen 90 NIVKYDLTTRSVVARRELPG 109 (250)
T ss_pred eEEEEECcCCcEEEEEECCc
Confidence 99999999987553333443
No 132
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=89.14 E-value=23 Score=34.50 Aligned_cols=111 Identities=8% Similarity=-0.108 Sum_probs=61.8
Q ss_pred cccEEEEEecC-----ceEEEeccCCCCeee-CCCCCCccccccCCceeEEeCCEEEEEcC-------ccCCceEEEEEC
Q 043540 138 IEHWVYFSCKL-----KEWEAFDPIHHRWMH-LPPMNASDCFMCADKESLAVGTELLVFGK-------EVHGNAIYRYNL 204 (437)
Q Consensus 138 ~~~~l~~~~~~-----~~~~~yDp~~~~W~~-l~~~p~~~~~~~~~~~~~~~~~~lyv~GG-------~~~~~~v~~yd~ 204 (437)
..+++|+.... +.+..+|..+.+-.. ++.-..|+. .+..-+..||+.-. ....+.+.+||+
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~~------~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~ 84 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPNP------VVASDGSFFAHASTVYSRIARGKRTDYVEVIDP 84 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCce------eECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 34567765432 678899988765432 222122221 11223567887653 123568999999
Q ss_pred CCCcee-cCCCCCCCccc-------eeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEe
Q 043540 205 LTNTWS-TGMTMNTPRCL-------FGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMP 259 (437)
Q Consensus 205 ~t~~W~-~~~~~~~~r~~-------~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 259 (437)
.|.+-. +++-.+.||.. ++...-+..+||.- . ...+.+-+.|.++++-..
T Consensus 85 ~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n-~----~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 85 QTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQ-F----SPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred ccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEec-C----CCCCEEEEEECCCCcEEE
Confidence 988754 33332344422 12222244677762 1 234789999999987643
No 133
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=89.12 E-value=16 Score=35.87 Aligned_cols=121 Identities=11% Similarity=0.112 Sum_probs=70.6
Q ss_pred eeeEEE-CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEE
Q 043540 222 FGSASL-GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEM 298 (437)
Q Consensus 222 ~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~ 298 (437)
++++.+ ++.|+..|-. -..+-+||..... .++.+|..-....++.+ ||...+.+-.+ .+|..
T Consensus 351 ts~~fHpDgLifgtgt~------d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add-------~~V~l 415 (506)
T KOG0289|consen 351 TSAAFHPDGLIFGTGTP------DGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADD-------GSVKL 415 (506)
T ss_pred EEeeEcCCceEEeccCC------CceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecC-------CeEEE
Confidence 344444 4566655433 2567889988876 66666654333344444 44444443322 34888
Q ss_pred EECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEE--ECCEEEEEeCCCCeEEEEeCCCCcEEEccCCCCcc
Q 043540 299 YDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV--VNNELYAADHEKEEVRKFDKGRKLWRTLGRLPEQA 372 (437)
Q Consensus 299 yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~~~ 372 (437)
+|+...+ .+..++..-... ...+. ..|+..+++|..-.|+.|+..+++|+++..++...
T Consensus 416 wDLRKl~--n~kt~~l~~~~~-------------v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~s 476 (506)
T KOG0289|consen 416 WDLRKLK--NFKTIQLDEKKE-------------VNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHS 476 (506)
T ss_pred EEehhhc--ccceeecccccc-------------ceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcc
Confidence 9987654 222222221110 11222 34777777777778999999999999998776654
No 134
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=88.12 E-value=25 Score=33.53 Aligned_cols=173 Identities=13% Similarity=0.166 Sum_probs=78.3
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCC-CCCC-ccce-eeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEec
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMT-MNTP-RCLF-GSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPI 260 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~-~~~~-r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 260 (437)
...-|++|-. ..++.=+---.+|+.... .+.+ ...+ ++...++..|++|.. ..+..-.=.-.+|+++
T Consensus 27 ~~~G~~VG~~---g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~-------g~ll~T~DgG~tW~~v 96 (302)
T PF14870_consen 27 PNHGWAVGAY---GTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP-------GLLLHTTDGGKTWERV 96 (302)
T ss_dssp SS-EEEEETT---TEEEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEET-------TEEEEESSTTSS-EE-
T ss_pred CCEEEEEecC---CEEEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCC-------ceEEEecCCCCCcEEe
Confidence 4567777732 334444444568987752 3322 2222 344457889988642 1122222234679998
Q ss_pred C-CCCcCCcCeeEEEE-CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE
Q 043540 261 S-SMHKARKMCSGVFM-DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV 338 (437)
Q Consensus 261 ~-~~~~~r~~~~~~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (437)
+ +.+.+...+....+ ++.+.+++... .++.-.-.-.+|+.+..-...-.. .....-
T Consensus 97 ~l~~~lpgs~~~i~~l~~~~~~l~~~~G--------~iy~T~DgG~tW~~~~~~~~gs~~--------------~~~r~~ 154 (302)
T PF14870_consen 97 PLSSKLPGSPFGITALGDGSAELAGDRG--------AIYRTTDGGKTWQAVVSETSGSIN--------------DITRSS 154 (302)
T ss_dssp ---TT-SS-EEEEEEEETTEEEEEETT----------EEEESSTTSSEEEEE-S----EE--------------EEEE-T
T ss_pred ecCCCCCCCeeEEEEcCCCcEEEEcCCC--------cEEEeCCCCCCeeEcccCCcceeE--------------eEEECC
Confidence 6 22333333444443 56677765432 355555556689887532222111 112234
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEc
Q 043540 339 NNELYAADHEKEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIG 393 (437)
Q Consensus 339 ~~~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~G 393 (437)
+|++++++...+-+...|+....|.........+-. .+++ .-++.|+++.
T Consensus 155 dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq----~~gf-~~~~~lw~~~ 204 (302)
T PF14870_consen 155 DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQ----SMGF-SPDGNLWMLA 204 (302)
T ss_dssp TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EE----EEEE--TTS-EEEEE
T ss_pred CCcEEEEECcccEEEEecCCCccceEEccCccceeh----hcee-cCCCCEEEEe
Confidence 778777887777677889999999998754333321 2333 2356776663
No 135
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=88.00 E-value=39 Score=35.75 Aligned_cols=58 Identities=21% Similarity=0.189 Sum_probs=39.2
Q ss_pred ceEEEeccCCCCeeeCCCCCCccccccCCceeEEeC--CEEEEEcCccCCceEEEEECCCCceecC
Q 043540 149 KEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVG--TELLVFGKEVHGNAIYRYNLLTNTWSTG 212 (437)
Q Consensus 149 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~--~~lyv~GG~~~~~~v~~yd~~t~~W~~~ 212 (437)
..+.++|....+=.+--..|.|..+.| ++++ |.|.+.|+.. .-++++++..|++-..+
T Consensus 414 GtVRAwDlkRYrNfRTft~P~p~Qfsc-----vavD~sGelV~AG~~d-~F~IfvWS~qTGqllDi 473 (893)
T KOG0291|consen 414 GTVRAWDLKRYRNFRTFTSPEPIQFSC-----VAVDPSGELVCAGAQD-SFEIFVWSVQTGQLLDI 473 (893)
T ss_pred CeEEeeeecccceeeeecCCCceeeeE-----EEEcCCCCEEEeeccc-eEEEEEEEeecCeeeeh
Confidence 456778877766554444566655544 6666 8888887543 34788999999887654
No 136
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=87.89 E-value=26 Score=33.50 Aligned_cols=224 Identities=13% Similarity=0.041 Sum_probs=104.7
Q ss_pred EEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCce-ecCCC----CC
Q 043540 142 VYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTW-STGMT----MN 216 (437)
Q Consensus 142 l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W-~~~~~----~~ 216 (437)
+++......++.|||.+++=..... |..... ....-.++.|.+.. ..++.+++.+..- +.+.. .+
T Consensus 40 ~w~DI~~~~i~r~~~~~g~~~~~~~-p~~~~~----~~~~d~~g~Lv~~~-----~g~~~~~~~~~~~~t~~~~~~~~~~ 109 (307)
T COG3386 40 LWVDILGGRIHRLDPETGKKRVFPS-PGGFSS----GALIDAGGRLIACE-----HGVRLLDPDTGGKITLLAEPEDGLP 109 (307)
T ss_pred EEEeCCCCeEEEecCCcCceEEEEC-CCCccc----ceeecCCCeEEEEc-----cccEEEeccCCceeEEeccccCCCC
Confidence 3344456778999998664333221 111111 01122344454442 3455666654433 44432 33
Q ss_pred CCccceeeEEECCEEEEEecc-----CCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEECC-EEEEEecccCCCC
Q 043540 217 TPRCLFGSASLGEIAILAGGC-----DPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFMDG-KFYVIGGIGEGSS 290 (437)
Q Consensus 217 ~~r~~~~~~~~~~~iyv~GG~-----~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~g-~lyv~GG~~~~~~ 290 (437)
.-|.+=..+--++.+|+---. .........+++||| .+..+++..-.......-+..-|+ .+|+.-
T Consensus 110 ~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aD------- 181 (307)
T COG3386 110 LNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVAD------- 181 (307)
T ss_pred cCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEe-------
Confidence 334444555556666654322 112233457999999 455555432222222333344466 566652
Q ss_pred ccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCC-CEEEEECCEEEEEeC-CCCeEEEEeCCCCcEEEccCC
Q 043540 291 AMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAP-PLLAVVNNELYAADH-EKEEVRKFDKGRKLWRTLGRL 368 (437)
Q Consensus 291 ~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ly~~gg-~~~~v~~yd~~~~~W~~v~~l 368 (437)
...+.+++|+... .....-.. +.. +......+.+ ..++--+|.||+... ....|.+|++. .+=...-.+
T Consensus 182 T~~~~i~r~~~d~---~~g~~~~~-~~~----~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l 252 (307)
T COG3386 182 TPANRIHRYDLDP---ATGPIGGR-RGF----VDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL 252 (307)
T ss_pred CCCCeEEEEecCc---ccCccCCc-ceE----EEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEEC
Confidence 2234577777653 11110000 000 0000000111 234446889996543 34589999999 333333456
Q ss_pred CCcccCCCcccEEEEE-eCCEEEEEcCCC
Q 043540 369 PEQASSMNGWGLAFRA-CGDQLIVIGGPR 396 (437)
Q Consensus 369 p~~~~~~~~~~~a~~~-~~~~l~v~GG~~ 396 (437)
|..... .+++.- ..+.|||.....
T Consensus 253 P~~~~t----~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 253 PVKRPT----NPAFGGPDLNTLYITSARS 277 (307)
T ss_pred CCCCCc----cceEeCCCcCEEEEEecCC
Confidence 643332 122211 137889987554
No 137
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=87.69 E-value=31 Score=34.26 Aligned_cols=195 Identities=12% Similarity=0.050 Sum_probs=92.9
Q ss_pred EEeCCEEEEEcCccCCceEEEEECCCCceecCCCCC-CCccceeeEEE-CCEEEEEeccCCCCCCCceEEEEECCCCcEE
Q 043540 181 LAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMN-TPRCLFGSASL-GEIAILAGGCDPRGKLLKSAELYNSITGTWM 258 (437)
Q Consensus 181 ~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~-~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~ 258 (437)
...++.+|+.|.. ..++.=.-.-.+|++++..+ .+-.......+ ++.++++|.. ..+++=+-.-.+|+
T Consensus 143 ~f~~~~g~~vG~~---G~il~T~DgG~tW~~~~~~~~~p~~~~~i~~~~~~~~~ivg~~-------G~v~~S~D~G~tW~ 212 (398)
T PLN00033 143 SFKGKEGWIIGKP---AILLHTSDGGETWERIPLSPKLPGEPVLIKATGPKSAEMVTDE-------GAIYVTSNAGRNWK 212 (398)
T ss_pred EEECCEEEEEcCc---eEEEEEcCCCCCceECccccCCCCCceEEEEECCCceEEEecc-------ceEEEECCCCCCce
Confidence 4457788888732 23444444457899875321 11112223334 3557777632 22333333345799
Q ss_pred ecCCCC----cCC--------------cCeeEEE-ECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCC
Q 043540 259 PISSMH----KAR--------------KMCSGVF-MDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGS 319 (437)
Q Consensus 259 ~~~~~~----~~r--------------~~~~~~~-~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~ 319 (437)
.+...+ ..+ ....+.. -+|.++++|-.. +-+...|.....|+.+......+..
T Consensus 213 ~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~G-------~~~~s~d~G~~~W~~~~~~~~~~l~- 284 (398)
T PLN00033 213 AAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSRG-------NFYLTWEPGQPYWQPHNRASARRIQ- 284 (398)
T ss_pred EcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECCc-------cEEEecCCCCcceEEecCCCcccee-
Confidence 872221 111 0111121 245555554332 1122344444458988643333222
Q ss_pred CCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCcE-----EEccCCCCcccCCCcccEEEEE-eCCEEEEEc
Q 043540 320 DGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKLW-----RTLGRLPEQASSMNGWGLAFRA-CGDQLIVIG 393 (437)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~W-----~~v~~lp~~~~~~~~~~~a~~~-~~~~l~v~G 393 (437)
......++.+++++.. ..+..-+.....| .++.. +..... . .++.. -++.++++|
T Consensus 285 -------------~v~~~~dg~l~l~g~~-G~l~~S~d~G~~~~~~~f~~~~~-~~~~~~---l-~~v~~~~d~~~~a~G 345 (398)
T PLN00033 285 -------------NMGWRADGGLWLLTRG-GGLYVSKGTGLTEEDFDFEEADI-KSRGFG---I-LDVGYRSKKEAWAAG 345 (398)
T ss_pred -------------eeeEcCCCCEEEEeCC-ceEEEecCCCCcccccceeeccc-CCCCcc---e-EEEEEcCCCcEEEEE
Confidence 1223457889988744 4455555454545 44332 111110 0 12222 356888888
Q ss_pred CCCCCCCCeeEEEeeecCCCCCCceecC
Q 043540 394 GPRDSGGGIVELNGWVPDEGPPHWKLLA 421 (437)
Q Consensus 394 G~~~~~~~~~~~~~~~~d~~~~~W~~l~ 421 (437)
..- -++.-.....+|+.+.
T Consensus 346 ~~G---------~v~~s~D~G~tW~~~~ 364 (398)
T PLN00033 346 GSG---------ILLRSTDGGKSWKRDK 364 (398)
T ss_pred CCC---------cEEEeCCCCcceeEcc
Confidence 542 1444455677888864
No 138
>PLN00181 protein SPA1-RELATED; Provisional
Probab=87.49 E-value=49 Score=36.25 Aligned_cols=144 Identities=16% Similarity=0.176 Sum_probs=71.9
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEE---CCEEEEEeccCCCCCCCceEEEEECCCCc--EE
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL---GEIAILAGGCDPRGKLLKSAELYNSITGT--WM 258 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~ 258 (437)
++.+++.|+.. ..+.+||..++.-. ..+... ....++.+ ++..+++|+.+ ..+.+||..+.. ..
T Consensus 587 ~~~~L~Sgs~D--g~v~iWd~~~~~~~--~~~~~~-~~v~~v~~~~~~g~~latgs~d------g~I~iwD~~~~~~~~~ 655 (793)
T PLN00181 587 DPTLLASGSDD--GSVKLWSINQGVSI--GTIKTK-ANICCVQFPSESGRSLAFGSAD------HKVYYYDLRNPKLPLC 655 (793)
T ss_pred CCCEEEEEcCC--CEEEEEECCCCcEE--EEEecC-CCeEEEEEeCCCCCEEEEEeCC------CeEEEEECCCCCccce
Confidence 45566666543 46888888764321 111111 11122222 46677777643 568899987642 11
Q ss_pred ecCCCCcCCcC-eeEEEECCEEEEEecccCCCCccCCeEEEEECCCCc----eEecCCCCCcccCCCCcccccccCCCCC
Q 043540 259 PISSMHKARKM-CSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGK----WTQITDMFPARIGSDGVSVISAAGEAPP 333 (437)
Q Consensus 259 ~~~~~~~~r~~-~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~----W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (437)
.+. ..... ....+.++..++.|+.+ ..+..||+.... |..+..+. +|... ...
T Consensus 656 ~~~---~h~~~V~~v~f~~~~~lvs~s~D-------~~ikiWd~~~~~~~~~~~~l~~~~----gh~~~--------i~~ 713 (793)
T PLN00181 656 TMI---GHSKTVSYVRFVDSSTLVSSSTD-------NTLKLWDLSMSISGINETPLHSFM----GHTNV--------KNF 713 (793)
T ss_pred Eec---CCCCCEEEEEEeCCCEEEEEECC-------CEEEEEeCCCCccccCCcceEEEc----CCCCC--------eeE
Confidence 111 11111 22334467777777654 247788876431 22221111 11000 001
Q ss_pred EEEEECCEEEEEeCCCCeEEEEeCCCC
Q 043540 334 LLAVVNNELYAADHEKEEVRKFDKGRK 360 (437)
Q Consensus 334 ~~~~~~~~ly~~gg~~~~v~~yd~~~~ 360 (437)
.....++.+++.|+..+.+.+|+....
T Consensus 714 v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 714 VGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred EEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 122335777777877888999987654
No 139
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=86.51 E-value=20 Score=32.96 Aligned_cols=155 Identities=15% Similarity=0.060 Sum_probs=73.1
Q ss_pred ceeEEeCCEEEEEcCc--cCC---ceEEEEEC---CCCceec--CCCCCC-------CccceeeEEECCEEEEEeccCCC
Q 043540 178 KESLAVGTELLVFGKE--VHG---NAIYRYNL---LTNTWST--GMTMNT-------PRCLFGSASLGEIAILAGGCDPR 240 (437)
Q Consensus 178 ~~~~~~~~~lyv~GG~--~~~---~~v~~yd~---~t~~W~~--~~~~~~-------~r~~~~~~~~~~~iyv~GG~~~~ 240 (437)
.+.-.+++.||.+=.. ... ...+.|+- ..+.|+. ++..+. .-..|+-+.+++.-|.+|=.++.
T Consensus 78 mSMGv~~NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD 157 (367)
T PF12217_consen 78 MSMGVVGNRLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGD 157 (367)
T ss_dssp B-EEEETTEEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-S
T ss_pred eeeeeecceeeEEEeehhhhhhhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCC
Confidence 3456789999987421 111 12333442 4677864 344433 34557778888888888755544
Q ss_pred CCCCceEEEEECCC-----Cc-EEecCCC-CcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCC
Q 043540 241 GKLLKSAELYNSIT-----GT-WMPISSM-HKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMF 313 (437)
Q Consensus 241 ~~~~~~~~~yd~~t-----~~-W~~~~~~-~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~ 313 (437)
-....--..|-+.. .. =+.+++- ...-.-...-.++|+||+.---. .....-..+.+-+..-..|+.+.-..
T Consensus 158 ~sPRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt-~~~~~GS~L~rs~d~G~~w~slrfp~ 236 (367)
T PF12217_consen 158 VSPRELGFLYFSDAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGT-LPTNPGSSLHRSDDNGQNWSSLRFPN 236 (367)
T ss_dssp SSS-EEEEEEETTTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES--TTS---EEEEESSTTSS-EEEE-TT
T ss_pred CCcceeeEEEecccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCc-CCCCCcceeeeecccCCchhhccccc
Confidence 32222223332211 11 1222221 11112233446799999985433 22344456677777778899885321
Q ss_pred -CcccCCCCcccccccCCCCCEEEEECCEEEEEeC
Q 043540 314 -PARIGSDGVSVISAAGEAPPLLAVVNNELYAADH 347 (437)
Q Consensus 314 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg 347 (437)
...+. ...+.+++.||++|.
T Consensus 237 nvHhtn--------------lPFakvgD~l~mFgs 257 (367)
T PF12217_consen 237 NVHHTN--------------LPFAKVGDVLYMFGS 257 (367)
T ss_dssp ---SS-----------------EEEETTEEEEEEE
T ss_pred cccccC--------------CCceeeCCEEEEEec
Confidence 11222 236788999999973
No 140
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=85.97 E-value=57 Score=35.49 Aligned_cols=168 Identities=14% Similarity=0.128 Sum_probs=84.7
Q ss_pred ccEEEEEecCceEEEeccCCC--CeeeCCCCCCcc--ccccCCce-----------------eEEeCCEEEEEcCccCCc
Q 043540 139 EHWVYFSCKLKEWEAFDPIHH--RWMHLPPMNASD--CFMCADKE-----------------SLAVGTELLVFGKEVHGN 197 (437)
Q Consensus 139 ~~~l~~~~~~~~~~~yDp~~~--~W~~l~~~p~~~--~~~~~~~~-----------------~~~~~~~lyv~GG~~~~~ 197 (437)
..-+|+++..+.+.++|..++ .|+.-+..+... ...++... .+..+++||+-. ...
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T---~Dg 270 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPT---SDA 270 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEec---CCC
Confidence 345777777788899999876 587655443221 00000000 112344666532 234
Q ss_pred eEEEEECCCCc--eec-----------CCCCCCCc--cceeeEEECCEEEEEeccCCC---CCCCceEEEEECCCCc--E
Q 043540 198 AIYRYNLLTNT--WST-----------GMTMNTPR--CLFGSASLGEIAILAGGCDPR---GKLLKSAELYNSITGT--W 257 (437)
Q Consensus 198 ~v~~yd~~t~~--W~~-----------~~~~~~~r--~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~~yd~~t~~--W 257 (437)
.++.+|..|++ |+- +...+... ...+-++.++.||+-+...+. ......+..||.+|++ |
T Consensus 271 ~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 271 RLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred eEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 57777877764 431 11121111 122345667777763321111 1234678899999987 7
Q ss_pred EecCCCC------cC-----CcCe---eEEEEC---CEEEEEeccc----------CCCCccCCeEEEEECCCCc--eEe
Q 043540 258 MPISSMH------KA-----RKMC---SGVFMD---GKFYVIGGIG----------EGSSAMLTDVEMYDLETGK--WTQ 308 (437)
Q Consensus 258 ~~~~~~~------~~-----r~~~---~~~~~~---g~lyv~GG~~----------~~~~~~~~~v~~yd~~~~~--W~~ 308 (437)
+.-..-| .+ +... ....+| |.+|+--|.. ...+...+++...|++|++ |..
T Consensus 351 ~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~ 430 (764)
T TIGR03074 351 AWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVF 430 (764)
T ss_pred EEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEe
Confidence 6432111 01 1100 122333 5677743321 0122456789999999875 765
Q ss_pred c
Q 043540 309 I 309 (437)
Q Consensus 309 ~ 309 (437)
-
T Consensus 431 Q 431 (764)
T TIGR03074 431 Q 431 (764)
T ss_pred c
Confidence 4
No 141
>PTZ00421 coronin; Provisional
Probab=85.90 E-value=45 Score=34.26 Aligned_cols=106 Identities=13% Similarity=0.109 Sum_probs=56.9
Q ss_pred CCEEEEEeccCCCCCCCceEEEEECCCCcEE-----ecCCCCcCCcCeeEEEE---CCEEEEEecccCCCCccCCeEEEE
Q 043540 228 GEIAILAGGCDPRGKLLKSAELYNSITGTWM-----PISSMHKARKMCSGVFM---DGKFYVIGGIGEGSSAMLTDVEMY 299 (437)
Q Consensus 228 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~-----~~~~~~~~r~~~~~~~~---~g~lyv~GG~~~~~~~~~~~v~~y 299 (437)
++.+++.|+.+ ..+.+||..++... .+..+.........+.+ ++.+++.|+.+ ..+..|
T Consensus 87 d~~~LaSgS~D------gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D-------gtVrIW 153 (493)
T PTZ00421 87 DPQKLFTASED------GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD-------MVVNVW 153 (493)
T ss_pred CCCEEEEEeCC------CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC-------CEEEEE
Confidence 45666777654 45778887654321 11112111122223333 24577777765 358889
Q ss_pred ECCCCceEecCCCCCcccCCCCcccccccCCCCCEEE-EECCEEEEEeCCCCeEEEEeCCCCc
Q 043540 300 DLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLA-VVNNELYAADHEKEEVRKFDKGRKL 361 (437)
Q Consensus 300 d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~gg~~~~v~~yd~~~~~ 361 (437)
|+.+++-.. .+...... + ..++ .-++.+++.++..+.|.+||+.+.+
T Consensus 154 Dl~tg~~~~--~l~~h~~~----V---------~sla~spdG~lLatgs~Dg~IrIwD~rsg~ 201 (493)
T PTZ00421 154 DVERGKAVE--VIKCHSDQ----I---------TSLEWNLDGSLLCTTSKDKKLNIIDPRDGT 201 (493)
T ss_pred ECCCCeEEE--EEcCCCCc----e---------EEEEEECCCCEEEEecCCCEEEEEECCCCc
Confidence 998764221 11100000 0 1122 2367888888888899999998765
No 142
>PRK02889 tolB translocation protein TolB; Provisional
Probab=85.79 E-value=41 Score=33.73 Aligned_cols=187 Identities=10% Similarity=-0.056 Sum_probs=90.6
Q ss_pred ceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCC-EEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEE
Q 043540 149 KEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGT-ELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL 227 (437)
Q Consensus 149 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~-~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 227 (437)
.+++..|........+...+.+... ...+-++ .|++.........++++|..+++=+.+...+... ......-
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~-----p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~-~~~~~SP 249 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIIS-----PAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSN-SAPAWSP 249 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCccc-----ceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCc-cceEECC
Confidence 4577777755444443322211111 1123344 3433322223457999999888765554433211 1112222
Q ss_pred CC-EEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEECCE-EEEEecccCCCCccCCeEEEEECCCCc
Q 043540 228 GE-IAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFMDGK-FYVIGGIGEGSSAMLTDVEMYDLETGK 305 (437)
Q Consensus 228 ~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~g~-lyv~GG~~~~~~~~~~~v~~yd~~~~~ 305 (437)
++ +|++....++ ...++.+|..++..+.+..-.. ........-||+ |++..... ....++.+|..++.
T Consensus 250 DG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~~-~~~~~~wSpDG~~l~f~s~~~-----g~~~Iy~~~~~~g~ 319 (427)
T PRK02889 250 DGRTLAVALSRDG----NSQIYTVNADGSGLRRLTQSSG-IDTEPFFSPDGRSIYFTSDRG-----GAPQIYRMPASGGA 319 (427)
T ss_pred CCCEEEEEEccCC----CceEEEEECCCCCcEECCCCCC-CCcCeEEcCCCCEEEEEecCC-----CCcEEEEEECCCCc
Confidence 33 5555443322 2678889988877666643221 111122233565 44432211 12357888888777
Q ss_pred eEecCCCCCcccCCCCcccccccCCCCCEEEEECCE-EEEEeCC--CCeEEEEeCCCCcEEEcc
Q 043540 306 WTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNE-LYAADHE--KEEVRKFDKGRKLWRTLG 366 (437)
Q Consensus 306 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ly~~gg~--~~~v~~yd~~~~~W~~v~ 366 (437)
.+.+..- ..... .....-+|+ |+..... ...|+++|..+++.+.+.
T Consensus 320 ~~~lt~~--g~~~~-------------~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 320 AQRVTFT--GSYNT-------------SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT 368 (427)
T ss_pred eEEEecC--CCCcC-------------ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc
Confidence 7666421 11110 112222444 4433322 236999999988877765
No 143
>PRK04043 tolB translocation protein TolB; Provisional
Probab=85.53 E-value=42 Score=33.63 Aligned_cols=150 Identities=9% Similarity=0.006 Sum_probs=84.2
Q ss_pred ceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCC-EEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEE
Q 043540 149 KEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGT-ELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL 227 (437)
Q Consensus 149 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~-~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 227 (437)
.+++.+|..+++=..+...+..... ...+-++ +|++.-......++|.+|..++.++++...+.. .......-
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~~~~-----~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~-d~~p~~SP 286 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGMLVV-----SDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGI-DVNGNFVE 286 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCcEEe-----eEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCc-cCccEECC
Confidence 5678888887766665542221100 0122233 454443223356899999999999988654431 11112222
Q ss_pred -CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEECCEEEEEecccCCCC--ccCCeEEEEECCCC
Q 043540 228 -GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSS--AMLTDVEMYDLETG 304 (437)
Q Consensus 228 -~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~--~~~~~v~~yd~~~~ 304 (437)
+.+||+.....+ ...++++|..+++.+++..-.. .. ....-+|+..++-.....+. .....++.+|++++
T Consensus 287 DG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~g~--~~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g 359 (419)
T PRK04043 287 DDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFHGK--NN-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD 359 (419)
T ss_pred CCCEEEEEECCCC----CceEEEEECCCCCeEeCccCCC--cC-ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC
Confidence 456777654322 2689999999998877653211 22 23344665444433221111 12357899999999
Q ss_pred ceEecCC
Q 043540 305 KWTQITD 311 (437)
Q Consensus 305 ~W~~~~~ 311 (437)
.++.+..
T Consensus 360 ~~~~LT~ 366 (419)
T PRK04043 360 YIRRLTA 366 (419)
T ss_pred CeEECCC
Confidence 9988865
No 144
>PRK01742 tolB translocation protein TolB; Provisional
Probab=85.32 E-value=42 Score=33.66 Aligned_cols=138 Identities=13% Similarity=0.031 Sum_probs=65.1
Q ss_pred eEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCE-EEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEEC
Q 043540 150 EWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTE-LLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLG 228 (437)
Q Consensus 150 ~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~-lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~ 228 (437)
.++.+|..+++-..+...+.... .....-++. |++........++|.+|..++..+.+..-... .......-+
T Consensus 229 ~i~i~dl~tg~~~~l~~~~g~~~-----~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~-~~~~~wSpD 302 (429)
T PRK01742 229 QLVVHDLRSGARKVVASFRGHNG-----APAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGN-NTEPSWSPD 302 (429)
T ss_pred EEEEEeCCCCceEEEecCCCccC-----ceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCC-cCCEEECCC
Confidence 46667776655444443322111 011233444 44333222334688999988877766432211 111122224
Q ss_pred C-EEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEECCE-EEEEecccCCCCccCCeEEEEECCCCce
Q 043540 229 E-IAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFMDGK-FYVIGGIGEGSSAMLTDVEMYDLETGKW 306 (437)
Q Consensus 229 ~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~g~-lyv~GG~~~~~~~~~~~v~~yd~~~~~W 306 (437)
+ .|++....++. ..++.+|..++.-+.+.. .. ......-+|+ |++.++ ..+..+|+.++++
T Consensus 303 G~~i~f~s~~~g~----~~I~~~~~~~~~~~~l~~---~~-~~~~~SpDG~~ia~~~~---------~~i~~~Dl~~g~~ 365 (429)
T PRK01742 303 GQSILFTSDRSGS----PQVYRMSASGGGASLVGG---RG-YSAQISADGKTLVMING---------DNVVKQDLTSGST 365 (429)
T ss_pred CCEEEEEECCCCC----ceEEEEECCCCCeEEecC---CC-CCccCCCCCCEEEEEcC---------CCEEEEECCCCCe
Confidence 4 45554332221 456777766554333311 11 1122223554 444433 1367799999988
Q ss_pred EecC
Q 043540 307 TQIT 310 (437)
Q Consensus 307 ~~~~ 310 (437)
..+.
T Consensus 366 ~~lt 369 (429)
T PRK01742 366 EVLS 369 (429)
T ss_pred EEec
Confidence 7664
No 145
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=84.51 E-value=60 Score=34.49 Aligned_cols=152 Identities=16% Similarity=0.192 Sum_probs=80.5
Q ss_pred cceeeEEEC--CEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEE
Q 043540 220 CLFGSASLG--EIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVE 297 (437)
Q Consensus 220 ~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~ 297 (437)
.....++++ +.-+.+|+. .+..+.+|+-.+++...-..-...|..+.+..-||.+.+.|+.+ ..|.
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~-----klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eD-------gKVK 375 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCS-----KLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAED-------GKVK 375 (893)
T ss_pred ceeeEEEecccCCEEEEcCC-----ccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCC-------CcEE
Confidence 334445554 555556542 24567788766665543222223333334444589999998876 2477
Q ss_pred EEECCCCceE-ecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCC-cEEEccCCCCcccCC
Q 043540 298 MYDLETGKWT-QITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRK-LWRTLGRLPEQASSM 375 (437)
Q Consensus 298 ~yd~~~~~W~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~-~W~~v~~lp~~~~~~ 375 (437)
+||..++.-. .+.....+.. .......|+..+--.-.+.|.++|...- .++.. ..|.+..
T Consensus 376 vWn~~SgfC~vTFteHts~Vt---------------~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTf-t~P~p~Q-- 437 (893)
T KOG0291|consen 376 VWNTQSGFCFVTFTEHTSGVT---------------AVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTF-TSPEPIQ-- 437 (893)
T ss_pred EEeccCceEEEEeccCCCceE---------------EEEEEecCCEEEEeecCCeEEeeeecccceeeee-cCCCcee--
Confidence 7777664321 1111111111 1122234555444334567889988763 34444 3344442
Q ss_pred CcccEEEEEeC--CEEEEEcCCCCCCCCeeEEEeeec
Q 043540 376 NGWGLAFRACG--DQLIVIGGPRDSGGGIVELNGWVP 410 (437)
Q Consensus 376 ~~~~~a~~~~~--~~l~v~GG~~~~~~~~~~~~~~~~ 410 (437)
+++++.+ |.|+++|+.+ ..++.+|..
T Consensus 438 ----fscvavD~sGelV~AG~~d-----~F~IfvWS~ 465 (893)
T KOG0291|consen 438 ----FSCVAVDPSGELVCAGAQD-----SFEIFVWSV 465 (893)
T ss_pred ----eeEEEEcCCCCEEEeeccc-----eEEEEEEEe
Confidence 4556666 8899999865 345555543
No 146
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=84.18 E-value=32 Score=31.19 Aligned_cols=134 Identities=16% Similarity=0.205 Sum_probs=82.4
Q ss_pred ceEEEEECCCCceecCCCCCCCccceeeEEECC--EEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEE
Q 043540 197 NAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGE--IAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVF 274 (437)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~ 274 (437)
..+.++|..|++--+- ...--....++.+++ .+.+.|+++ .++..+|-.++.-+++.-+...+...+.+.
T Consensus 81 k~v~vwDV~TGkv~Rr--~rgH~aqVNtV~fNeesSVv~SgsfD------~s~r~wDCRS~s~ePiQildea~D~V~Si~ 152 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRR--FRGHLAQVNTVRFNEESSVVASGSFD------SSVRLWDCRSRSFEPIQILDEAKDGVSSID 152 (307)
T ss_pred ceEEEEEcccCeeeee--cccccceeeEEEecCcceEEEecccc------ceeEEEEcccCCCCccchhhhhcCceeEEE
Confidence 4688899988753211 000001112333443 566666654 678899999999998888888888999999
Q ss_pred ECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEE
Q 043540 275 MDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRK 354 (437)
Q Consensus 275 ~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~ 354 (437)
+.+...|.|..+ ..+-.||+..++-..= -+..+... ....-++...++|.....+..
T Consensus 153 v~~heIvaGS~D-------GtvRtydiR~G~l~sD-y~g~pit~---------------vs~s~d~nc~La~~l~stlrL 209 (307)
T KOG0316|consen 153 VAEHEIVAGSVD-------GTVRTYDIRKGTLSSD-YFGHPITS---------------VSFSKDGNCSLASSLDSTLRL 209 (307)
T ss_pred ecccEEEeeccC-------CcEEEEEeecceeehh-hcCCccee---------------EEecCCCCEEEEeeccceeee
Confidence 999988887665 2477899876643211 11111111 112225555666655666777
Q ss_pred EeCCCCc
Q 043540 355 FDKGRKL 361 (437)
Q Consensus 355 yd~~~~~ 361 (437)
.|.++++
T Consensus 210 lDk~tGk 216 (307)
T KOG0316|consen 210 LDKETGK 216 (307)
T ss_pred cccchhH
Confidence 7777765
No 147
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=83.89 E-value=45 Score=32.55 Aligned_cols=63 Identities=16% Similarity=0.107 Sum_probs=34.5
Q ss_pred CceEEEeccCCCCee-eCCCCCCccccccC--CceeEEeCC-EEEEEcCccCCceEEEEECCCCceec
Q 043540 148 LKEWEAFDPIHHRWM-HLPPMNASDCFMCA--DKESLAVGT-ELLVFGKEVHGNAIYRYNLLTNTWST 211 (437)
Q Consensus 148 ~~~~~~yDp~~~~W~-~l~~~p~~~~~~~~--~~~~~~~~~-~lyv~GG~~~~~~v~~yd~~t~~W~~ 211 (437)
...+..||+.+.+-. .++.-+.|+..... ....++-+| .|||.- ....+.+-+.|..+++-..
T Consensus 76 ~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n-~~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 76 TDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQ-FSPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred CCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEec-CCCCCEEEEEECCCCcEEE
Confidence 356889999988764 33322333311111 111233344 577653 2335788999988876543
No 148
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=83.82 E-value=48 Score=32.82 Aligned_cols=147 Identities=12% Similarity=-0.025 Sum_probs=78.7
Q ss_pred ceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCC-EEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEE
Q 043540 149 KEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGT-ELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL 227 (437)
Q Consensus 149 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~-~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 227 (437)
..++.+|..+++-..+...+..... ....-++ .|++.........++.+|..++..+.+.......... ...-
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~-----~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~-~~s~ 287 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGA-----PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEP-SWSP 287 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccc-----eEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCE-EECC
Confidence 3577888887766555443221111 1122233 4555443333457999999988877765432111111 1112
Q ss_pred C-CEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCee-EEEECCEEEEEecccCCCCccCCeEEEEECCCCc
Q 043540 228 G-EIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCS-GVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGK 305 (437)
Q Consensus 228 ~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~-~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~ 305 (437)
+ .+|++.....+ ...++++|..++.++.+..-. ..... ...-+|+.+++.... .....+..+|+.++.
T Consensus 288 dg~~l~~~s~~~g----~~~iy~~d~~~~~~~~l~~~~--~~~~~~~~spdg~~i~~~~~~----~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 288 DGKSIAFTSDRGG----SPQIYMMDADGGEVRRLTFRG--GYNASPSWSPDGDLIAFVHRE----GGGFNIAVMDLDGGG 357 (417)
T ss_pred CCCEEEEEECCCC----CceEEEEECCCCCEEEeecCC--CCccCeEECCCCCEEEEEEcc----CCceEEEEEeCCCCC
Confidence 3 45555433221 247899999988887664221 11122 223366666655433 123468999999877
Q ss_pred eEecCC
Q 043540 306 WTQITD 311 (437)
Q Consensus 306 W~~~~~ 311 (437)
++.+..
T Consensus 358 ~~~l~~ 363 (417)
T TIGR02800 358 ERVLTD 363 (417)
T ss_pred eEEccC
Confidence 776653
No 149
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=83.30 E-value=23 Score=35.22 Aligned_cols=145 Identities=10% Similarity=0.023 Sum_probs=79.3
Q ss_pred ceEEEEECCCC-----ceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCc---EE-ecCCCCcCC
Q 043540 197 NAIYRYNLLTN-----TWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGT---WM-PISSMHKAR 267 (437)
Q Consensus 197 ~~v~~yd~~t~-----~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~---W~-~~~~~~~~r 267 (437)
+.++..+.... .|+.+.+- ..-....+...++.+|+.-..+. ....+..++..+.. |. .+.+-....
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~-~~~~~~~v~~~~~~~yi~Tn~~a---~~~~l~~~~l~~~~~~~~~~~l~~~~~~~ 327 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPR-EDGVEYYVDHHGDRLYILTNDDA---PNGRLVAVDLADPSPAEWWTVLIPEDEDV 327 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEES-SSS-EEEEEEETTEEEEEE-TT----TT-EEEEEETTSTSGGGEEEEEE--SSSE
T ss_pred CeEEEEeccccCCCcCCcEEEeCC-CCceEEEEEccCCEEEEeeCCCC---CCcEEEEecccccccccceeEEcCCCCce
Confidence 78899998875 67776431 22222334455889998866322 23677888888765 66 443333323
Q ss_pred cCeeEEEECCEEEEEecccCCCCccCCeEEEEECC-CCceEecCCCCCcccCCCCcccccccCCCCCEEEE---ECCEEE
Q 043540 268 KMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLE-TGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV---VNNELY 343 (437)
Q Consensus 268 ~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ly 343 (437)
....+...++.|++..-.+ ....+.+||+. +..-..++ +|..-.. .... -.+.++
T Consensus 328 ~l~~~~~~~~~Lvl~~~~~-----~~~~l~v~~~~~~~~~~~~~-~p~~g~v---------------~~~~~~~~~~~~~ 386 (414)
T PF02897_consen 328 SLEDVSLFKDYLVLSYREN-----GSSRLRVYDLDDGKESREIP-LPEAGSV---------------SGVSGDFDSDELR 386 (414)
T ss_dssp EEEEEEEETTEEEEEEEET-----TEEEEEEEETT-TEEEEEEE-SSSSSEE---------------EEEES-TT-SEEE
T ss_pred eEEEEEEECCEEEEEEEEC-----CccEEEEEECCCCcEEeeec-CCcceEE---------------eccCCCCCCCEEE
Confidence 3445556688888764322 34568899998 33223332 2221110 0111 133444
Q ss_pred EE-eC--CCCeEEEEeCCCCcEEEcc
Q 043540 344 AA-DH--EKEEVRKFDKGRKLWRTLG 366 (437)
Q Consensus 344 ~~-gg--~~~~v~~yd~~~~~W~~v~ 366 (437)
+. .+ ....++.||..+++-+.+.
T Consensus 387 ~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 387 FSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp EEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred EEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 43 22 2457999999999876653
No 150
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=82.80 E-value=23 Score=30.17 Aligned_cols=83 Identities=7% Similarity=0.030 Sum_probs=48.1
Q ss_pred EEECCEEEEEeccCCCCCCCceEEEEECCCCcE-EecCCCCcCCc----CeeE-EEECCEEEEEecccCCCCccCCeEEE
Q 043540 225 ASLGEIAILAGGCDPRGKLLKSAELYNSITGTW-MPISSMHKARK----MCSG-VFMDGKFYVIGGIGEGSSAMLTDVEM 298 (437)
Q Consensus 225 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W-~~~~~~~~~r~----~~~~-~~~~g~lyv~GG~~~~~~~~~~~v~~ 298 (437)
+.++|.+|.++....... ...+..||..+.+. +.+ ++|.... .... ++.++.|-++--.. ......+++
T Consensus 2 V~vnG~~hW~~~~~~~~~-~~~IlsFDl~~E~F~~~~-~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~---~~~~~~IWv 76 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDE-KDFILSFDLSTEKFGRSL-PLPFCNDDDDDSVSLSVVRGDCLCVLYQCD---ETSKIEIWV 76 (164)
T ss_pred EEECCEEEeeEEecCCCC-ceEEEEEeccccccCCEE-CCCCccCccCCEEEEEEecCCEEEEEEecc---CCccEEEEE
Confidence 568899998876543321 12789999999999 444 3443222 2233 23377888774322 111234554
Q ss_pred EE---CCCCceEecCCC
Q 043540 299 YD---LETGKWTQITDM 312 (437)
Q Consensus 299 yd---~~~~~W~~~~~~ 312 (437)
.+ -...+|+++-.+
T Consensus 77 m~~~~~~~~SWtK~~~i 93 (164)
T PF07734_consen 77 MKKYGYGKESWTKLFTI 93 (164)
T ss_pred EeeeccCcceEEEEEEE
Confidence 44 347789988543
No 151
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.30 E-value=40 Score=30.81 Aligned_cols=55 Identities=20% Similarity=0.575 Sum_probs=35.6
Q ss_pred eCCCCcEEEc--cCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCceecCcc
Q 043540 356 DKGRKLWRTL--GRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKLLARQ 423 (437)
Q Consensus 356 d~~~~~W~~v--~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~ 423 (437)
+.+.++|+.- ...|... |..+....++-|-|-||-+ .+.+|.-+. ..+|.+++..
T Consensus 241 ~~e~e~wk~tll~~f~~~~-----w~vSWS~sGn~LaVs~GdN-------kvtlwke~~-~Gkw~~v~~~ 297 (299)
T KOG1332|consen 241 DEEYEPWKKTLLEEFPDVV-----WRVSWSLSGNILAVSGGDN-------KVTLWKENV-DGKWEEVGEV 297 (299)
T ss_pred cCccCcccccccccCCcce-----EEEEEeccccEEEEecCCc-------EEEEEEeCC-CCcEEEcccc
Confidence 3456778753 3444443 5667767788888888755 366777663 4699988753
No 152
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=82.21 E-value=44 Score=31.30 Aligned_cols=178 Identities=14% Similarity=0.177 Sum_probs=86.8
Q ss_pred eCCEEEEEcCccCCceEEEEECCCCceecC----CCCCCCccceeeEEE-C-CEEEEEeccCCCCCCCceEEEEECCCCc
Q 043540 183 VGTELLVFGKEVHGNAIYRYNLLTNTWSTG----MTMNTPRCLFGSASL-G-EIAILAGGCDPRGKLLKSAELYNSITGT 256 (437)
Q Consensus 183 ~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~----~~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 256 (437)
-.+.....||- .+.+-+|+..+..=... ..++.-..+.+++.+ + +.|.-..| -.++-..|.++++
T Consensus 107 PSg~~VAcGGL--dN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SG-------D~TCalWDie~g~ 177 (343)
T KOG0286|consen 107 PSGNFVACGGL--DNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSG-------DMTCALWDIETGQ 177 (343)
T ss_pred CCCCeEEecCc--CceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCC-------CceEEEEEcccce
Confidence 34555556663 35566788775432211 123333444444443 4 34433323 1566778888875
Q ss_pred EEecCCCCcCCcCeeEEE---ECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCC
Q 043540 257 WMPISSMHKARKMCSGVF---MDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPP 333 (437)
Q Consensus 257 W~~~~~~~~~r~~~~~~~---~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (437)
=... +...-....+.. .+++.||.||.+ .....+|.....=.+.-.-...-.+
T Consensus 178 ~~~~--f~GH~gDV~slsl~p~~~ntFvSg~cD-------~~aklWD~R~~~c~qtF~ghesDIN--------------- 233 (343)
T KOG0286|consen 178 QTQV--FHGHTGDVMSLSLSPSDGNTFVSGGCD-------KSAKLWDVRSGQCVQTFEGHESDIN--------------- 233 (343)
T ss_pred EEEE--ecCCcccEEEEecCCCCCCeEEecccc-------cceeeeeccCcceeEeecccccccc---------------
Confidence 4322 111111111111 178999999986 2345566655422111000001111
Q ss_pred EEEE-ECCEEEEEeCCCCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCCC
Q 043540 334 LLAV-VNNELYAADHEKEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPR 396 (437)
Q Consensus 334 ~~~~-~~~~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~ 396 (437)
++.. =+|.-|+.|........||...++=..+-.-+.... +.........|+|++.|..+
T Consensus 234 sv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~---gitSv~FS~SGRlLfagy~d 294 (343)
T KOG0286|consen 234 SVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIIC---GITSVAFSKSGRLLFAGYDD 294 (343)
T ss_pred eEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccC---CceeEEEcccccEEEeeecC
Confidence 1222 266777777777789999998876444432222211 11122224568888888543
No 153
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=81.92 E-value=13 Score=37.82 Aligned_cols=124 Identities=13% Similarity=0.037 Sum_probs=62.5
Q ss_pred CCccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE--CCEEEEEecccCCCCcc
Q 043540 217 TPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM--DGKFYVIGGIGEGSSAM 292 (437)
Q Consensus 217 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~ 292 (437)
.|+.+..++.. .-.||++|- -.+++++|++.++|-.. +...-...-++.+ -..|.++|+..
T Consensus 132 IP~~GRDm~y~~~scDly~~gs-------g~evYRlNLEqGrfL~P--~~~~~~~lN~v~in~~hgLla~Gt~~------ 196 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVGS-------GSEVYRLNLEQGRFLNP--FETDSGELNVVSINEEHGLLACGTED------ 196 (703)
T ss_pred cCcCCccccccCCCccEEEeec-------CcceEEEEccccccccc--cccccccceeeeecCccceEEecccC------
Confidence 34444444432 346777753 27899999999998432 2211111122223 24577777755
Q ss_pred CCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE-CCEE-EEEeCCCCeEEEEeCCCCc
Q 043540 293 LTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV-NNEL-YAADHEKEEVRKFDKGRKL 361 (437)
Q Consensus 293 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l-y~~gg~~~~v~~yd~~~~~ 361 (437)
..|+.+|+.+..-...-........+.+.-..|. .++..+ |+-| +.+|...+.+++||+.+.+
T Consensus 197 -g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~s-----vTal~F~d~gL~~aVGts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 197 -GVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPS-----VTALKFRDDGLHVAVGTSTGSVLIYDLRASK 261 (703)
T ss_pred -ceEEEecchhhhhheeeecccccCCCccccccCc-----ceEEEecCCceeEEeeccCCcEEEEEcccCC
Confidence 3588899887643221111111111100111111 223333 4244 4567677889999987654
No 154
>PTZ00421 coronin; Provisional
Probab=81.13 E-value=70 Score=32.86 Aligned_cols=152 Identities=8% Similarity=0.091 Sum_probs=70.2
Q ss_pred EEEEEcCccCCceEEEEECCCCceecCCCCCCCccce-eeE-EECCEEEEEeccCCCCCCCceEEEEECCCCcEE-ecCC
Q 043540 186 ELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLF-GSA-SLGEIAILAGGCDPRGKLLKSAELYNSITGTWM-PISS 262 (437)
Q Consensus 186 ~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~-~~~~ 262 (437)
.+++.|+. ...+.+||..+++-.. .+....... +++ ..++.+++.|+.+ ..+.+||+.+++-. .+..
T Consensus 139 ~iLaSgs~--DgtVrIWDl~tg~~~~--~l~~h~~~V~sla~spdG~lLatgs~D------g~IrIwD~rsg~~v~tl~~ 208 (493)
T PTZ00421 139 NVLASAGA--DMVVNVWDVERGKAVE--VIKCHSDQITSLEWNLDGSLLCTTSKD------KKLNIIDPRDGTIVSSVEA 208 (493)
T ss_pred CEEEEEeC--CCEEEEEECCCCeEEE--EEcCCCCceEEEEEECCCCEEEEecCC------CEEEEEECCCCcEEEEEec
Confidence 45555543 3468889988764321 111111111 122 2356777777654 56788999876521 1211
Q ss_pred CCcCCcCeeEEEE-CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE--C
Q 043540 263 MHKARKMCSGVFM-DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV--N 339 (437)
Q Consensus 263 ~~~~r~~~~~~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 339 (437)
....+. ...+.. ++..++..|.. ...-..+..||+.+..-. +......... ...+..+ +
T Consensus 209 H~~~~~-~~~~w~~~~~~ivt~G~s---~s~Dr~VklWDlr~~~~p-~~~~~~d~~~-------------~~~~~~~d~d 270 (493)
T PTZ00421 209 HASAKS-QRCLWAKRKDLIITLGCS---KSQQRQIMLWDTRKMASP-YSTVDLDQSS-------------ALFIPFFDED 270 (493)
T ss_pred CCCCcc-eEEEEcCCCCeEEEEecC---CCCCCeEEEEeCCCCCCc-eeEeccCCCC-------------ceEEEEEcCC
Confidence 111111 112222 33444444432 112245888998653210 0000000000 0112222 4
Q ss_pred CEEEEEeC-CCCeEEEEeCCCCcEEEc
Q 043540 340 NELYAADH-EKEEVRKFDKGRKLWRTL 365 (437)
Q Consensus 340 ~~ly~~gg-~~~~v~~yd~~~~~W~~v 365 (437)
+.++++|+ ....|..||..++.....
T Consensus 271 ~~~L~lggkgDg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 271 TNLLYIGSKGEGNIRCFELMNERLTFC 297 (493)
T ss_pred CCEEEEEEeCCCeEEEEEeeCCceEEE
Confidence 55555544 356799999988776543
No 155
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=80.51 E-value=15 Score=37.49 Aligned_cols=105 Identities=19% Similarity=0.308 Sum_probs=61.2
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEE-e-
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWM-P- 259 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~-~- 259 (437)
...||+.| ...++|.+|+..++|-.-=....+ ...++.+ -+.++.+||.+ ..++.+|+.+..-. .
T Consensus 145 scDly~~g---sg~evYRlNLEqGrfL~P~~~~~~--~lN~v~in~~hgLla~Gt~~------g~VEfwDpR~ksrv~~l 213 (703)
T KOG2321|consen 145 SCDLYLVG---SGSEVYRLNLEQGRFLNPFETDSG--ELNVVSINEEHGLLACGTED------GVVEFWDPRDKSRVGTL 213 (703)
T ss_pred CccEEEee---cCcceEEEEccccccccccccccc--cceeeeecCccceEEecccC------ceEEEecchhhhhheee
Confidence 45778777 557899999999998642222222 2223333 35678888754 56788888775421 1
Q ss_pred -----cCCCCcCC--cCeeEEEE-CCEEEEEecccCCCCccCCeEEEEECCCCc
Q 043540 260 -----ISSMHKAR--KMCSGVFM-DGKFYVIGGIGEGSSAMLTDVEMYDLETGK 305 (437)
Q Consensus 260 -----~~~~~~~r--~~~~~~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~ 305 (437)
+.+.|..- ...+++.+ |+-|-+.-|.. ...++.||+.+.+
T Consensus 214 ~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts------~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 214 DAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS------TGSVLIYDLRASK 261 (703)
T ss_pred ecccccCCCccccccCcceEEEecCCceeEEeecc------CCcEEEEEcccCC
Confidence 12223221 12344444 54677665654 2358999998753
No 156
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=79.95 E-value=59 Score=31.26 Aligned_cols=168 Identities=11% Similarity=0.038 Sum_probs=88.7
Q ss_pred CEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcC--eeEEEECCEEEEEecccCCCCccCCeEEEEECCCC--
Q 043540 229 EIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKM--CSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETG-- 304 (437)
Q Consensus 229 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~--~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~-- 304 (437)
..+|++..-+..+. -..+..|+..++-+.+..-+.+-.. +.++--+|++.+..-+. ...+-+|-+.++
T Consensus 52 ~~LY~v~~~~~~gg--vaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~------~g~v~v~p~~~dG~ 123 (346)
T COG2706 52 RHLYVVNEPGEEGG--VAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYH------SGSVSVYPLQADGS 123 (346)
T ss_pred CEEEEEEecCCcCc--EEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEcc------CceEEEEEcccCCc
Confidence 46888866543322 3455566666788777554444333 22333355555544443 245666666542
Q ss_pred ceEecC------CCCCcccCCCCcccccccCCCCCEEE-EE-CCEEEEEeCCCCeEEEEeCCCCcEEEccCCCCcccCCC
Q 043540 305 KWTQIT------DMFPARIGSDGVSVISAAGEAPPLLA-VV-NNELYAADHEKEEVRKFDKGRKLWRTLGRLPEQASSMN 376 (437)
Q Consensus 305 ~W~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~ 376 (437)
-|..+. .-|..|..+ ...|.+. .- +..|++.+-..+.|..|+.+.+.-+.....-.+.....
T Consensus 124 l~~~v~~~~h~g~~p~~rQ~~----------~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GP 193 (346)
T COG2706 124 LQPVVQVVKHTGSGPHERQES----------PHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGP 193 (346)
T ss_pred cccceeeeecCCCCCCccccC----------CccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCc
Confidence 122211 112222110 0002211 12 34666777668899999998776655432211111000
Q ss_pred cccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCceecC
Q 043540 377 GWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKLLA 421 (437)
Q Consensus 377 ~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~ 421 (437)
-+.++..-+.-.|++.= -..++.+|.||+...+.+++.
T Consensus 194 -RHi~FHpn~k~aY~v~E------L~stV~v~~y~~~~g~~~~lQ 231 (346)
T COG2706 194 -RHIVFHPNGKYAYLVNE------LNSTVDVLEYNPAVGKFEELQ 231 (346)
T ss_pred -ceEEEcCCCcEEEEEec------cCCEEEEEEEcCCCceEEEee
Confidence 14555555567788863 346789999998877777763
No 157
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=79.02 E-value=71 Score=31.68 Aligned_cols=194 Identities=15% Similarity=0.055 Sum_probs=98.9
Q ss_pred CceEEEEECCCCcee--cCCCCCCCcc-c-eeeEEECCEEEEEeccCCCCCCCceEEEEECCCC-----cEEecCCCCcC
Q 043540 196 GNAIYRYNLLTNTWS--TGMTMNTPRC-L-FGSASLGEIAILAGGCDPRGKLLKSAELYNSITG-----TWMPISSMHKA 266 (437)
Q Consensus 196 ~~~v~~yd~~t~~W~--~~~~~~~~r~-~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~-----~W~~~~~~~~~ 266 (437)
...++.+...|..-. .+-.-+.... . .....-+++..++.-.... . .+.++..|.... .|+.+..-..
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~-~-~s~v~~~d~~~~~~~~~~~~~l~~~~~- 277 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGT-S-ESEVYLLDLDDGGSPDAKPKLLSPRED- 277 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSS-S-EEEEEEEECCCTTTSS-SEEEEEESSS-
T ss_pred CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccc-c-CCeEEEEeccccCCCcCCcEEEeCCCC-
Confidence 567888888776554 2211222222 1 2222234443333222211 1 378899999875 7887743211
Q ss_pred CcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCc---eE-ecCCCCCcccCCCCcccccccCCCCCEEEEECCEE
Q 043540 267 RKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGK---WT-QITDMFPARIGSDGVSVISAAGEAPPLLAVVNNEL 342 (437)
Q Consensus 267 r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~---W~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 342 (437)
-..+.+...++.+|+.... ......+..+++.+.. |. .+.+-.....- ..+...++.|
T Consensus 278 ~~~~~v~~~~~~~yi~Tn~----~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l--------------~~~~~~~~~L 339 (414)
T PF02897_consen 278 GVEYYVDHHGDRLYILTND----DAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSL--------------EDVSLFKDYL 339 (414)
T ss_dssp S-EEEEEEETTEEEEEE-T----T-TT-EEEEEETTSTSGGGEEEEEE--SSSEEE--------------EEEEEETTEE
T ss_pred ceEEEEEccCCEEEEeeCC----CCCCcEEEEecccccccccceeEEcCCCCceeE--------------EEEEEECCEE
Confidence 1223344559999998653 2344568889988765 66 44332222121 2456678888
Q ss_pred EEEe--CCCCeEEEEeCC-CCcEEEccCCCCcccCCCcccEEEEEeCCEEEE-EcCCCCCCCCeeEEEeeecCCCCCCce
Q 043540 343 YAAD--HEKEEVRKFDKG-RKLWRTLGRLPEQASSMNGWGLAFRACGDQLIV-IGGPRDSGGGIVELNGWVPDEGPPHWK 418 (437)
Q Consensus 343 y~~g--g~~~~v~~yd~~-~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v-~GG~~~~~~~~~~~~~~~~d~~~~~W~ 418 (437)
++.. .....|.+||+. +..-..+ .+|.... . .+.....-++.+++ +.++. .-..+|.||..+++.+
T Consensus 340 vl~~~~~~~~~l~v~~~~~~~~~~~~-~~p~~g~-v--~~~~~~~~~~~~~~~~ss~~------~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 340 VLSYRENGSSRLRVYDLDDGKESREI-PLPEAGS-V--SGVSGDFDSDELRFSYSSFT------TPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEEETTEEEEEEEETT-TEEEEEE-ESSSSSE-E--EEEES-TT-SEEEEEEEETT------EEEEEEEEETTTTCEE
T ss_pred EEEEEECCccEEEEEECCCCcEEeee-cCCcceE-E--eccCCCCCCCEEEEEEeCCC------CCCEEEEEECCCCCEE
Confidence 8764 335679999999 3333333 3443221 0 01111112355554 45554 2246888999888776
Q ss_pred ec
Q 043540 419 LL 420 (437)
Q Consensus 419 ~l 420 (437)
.+
T Consensus 410 ~~ 411 (414)
T PF02897_consen 410 LL 411 (414)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 158
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=78.95 E-value=72 Score=31.73 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=30.5
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCcEEEccC---CCCcccCCCcccEEEEEeCCEEEEEcC
Q 043540 339 NNELYAADHEKEEVRKFDKGRKLWRTLGR---LPEQASSMNGWGLAFRACGDQLIVIGG 394 (437)
Q Consensus 339 ~~~ly~~gg~~~~v~~yd~~~~~W~~v~~---lp~~~~~~~~~~~a~~~~~~~l~v~GG 394 (437)
++.++++|.. ..+++-...-++|+.+.. .+... +... ..-+++.|+.|-
T Consensus 338 d~~~~a~G~~-G~v~~s~D~G~tW~~~~~~~~~~~~l-----y~v~-f~~~~~g~~~G~ 389 (398)
T PLN00033 338 KKEAWAAGGS-GILLRSTDGGKSWKRDKGADNIAANL-----YSVK-FFDDKKGFVLGN 389 (398)
T ss_pred CCcEEEEECC-CcEEEeCCCCcceeEccccCCCCcce-----eEEE-EcCCCceEEEeC
Confidence 6788888854 446666677789999753 22222 2221 134578999873
No 159
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=78.74 E-value=64 Score=31.01 Aligned_cols=239 Identities=17% Similarity=0.202 Sum_probs=116.6
Q ss_pred EEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCC-c-eec------CCCCCCCcc--
Q 043540 151 WEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTN-T-WST------GMTMNTPRC-- 220 (437)
Q Consensus 151 ~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~-~-W~~------~~~~~~~r~-- 220 (437)
.+.+|+..++-+.+...+.+-...|. ..+.-.+. |+|...-....+-+|-..++ . |.. ..+-|.+|.
T Consensus 68 ay~iD~~~G~Lt~ln~~~~~g~~p~y--vsvd~~g~-~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~ 144 (346)
T COG2706 68 AYRIDPDDGRLTFLNRQTLPGSPPCY--VSVDEDGR-FVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQES 144 (346)
T ss_pred EEEEcCCCCeEEEeeccccCCCCCeE--EEECCCCC-EEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccC
Confidence 45667877887766544333322221 11222232 33332323345666655442 2 211 123344552
Q ss_pred --ceeeEE-ECC-EEEEEeccCCCCCCCceEEEEECCCCcEEecCCCC---cCCcCeeEEEECCE-EEEEecccCCCCcc
Q 043540 221 --LFGSAS-LGE-IAILAGGCDPRGKLLKSAELYNSITGTWMPISSMH---KARKMCSGVFMDGK-FYVIGGIGEGSSAM 292 (437)
Q Consensus 221 --~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~---~~r~~~~~~~~~g~-lyv~GG~~~~~~~~ 292 (437)
.|.+.. -++ .+++.- . -...+..|+.+.+.-+...... ..--.|.+.--+++ .|++.-.+ .
T Consensus 145 ~h~H~a~~tP~~~~l~v~D----L--G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~-----s 213 (346)
T COG2706 145 PHVHSANFTPDGRYLVVPD----L--GTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELN-----S 213 (346)
T ss_pred CccceeeeCCCCCEEEEee----c--CCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccC-----C
Confidence 222222 233 444431 1 1367888998877765543321 11223433334666 58886654 1
Q ss_pred CCeEEEEECCCCceEecC---CCCCcccCCCCcccccccCCCCCEEE--EECCE-EEEEeCCCCeEEEE--eCCCCcEEE
Q 043540 293 LTDVEMYDLETGKWTQIT---DMFPARIGSDGVSVISAAGEAPPLLA--VVNNE-LYAADHEKEEVRKF--DKGRKLWRT 364 (437)
Q Consensus 293 ~~~v~~yd~~~~~W~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-ly~~gg~~~~v~~y--d~~~~~W~~ 364 (437)
.-.++.||...++.+++. .||....+. ...+.. .-+|+ ||+..-..+.|.+| |+.+++-..
T Consensus 214 tV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~-----------~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~ 282 (346)
T COG2706 214 TVDVLEYNPAVGKFEELQTIDTLPEDFTGT-----------NWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLEL 282 (346)
T ss_pred EEEEEEEcCCCceEEEeeeeccCccccCCC-----------CceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEE
Confidence 223667777778887775 456554441 001111 12454 66654334455555 566666555
Q ss_pred ccCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCceecCc
Q 043540 365 LGRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKLLAR 422 (437)
Q Consensus 365 v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~ 422 (437)
++..+......+.|. +...++.|++.+ .. +..+.++.-|+.+.+-+++..
T Consensus 283 ~~~~~teg~~PR~F~--i~~~g~~Liaa~-q~-----sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 283 VGITPTEGQFPRDFN--INPSGRFLIAAN-QK-----SDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred EEEeccCCcCCccce--eCCCCCEEEEEc-cC-----CCcEEEEEEcCCCceEEeccc
Confidence 544333322222233 323344455554 32 334778888999998888754
No 160
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=78.32 E-value=12 Score=31.89 Aligned_cols=80 Identities=20% Similarity=0.247 Sum_probs=49.9
Q ss_pred EEECCEEEEEeCCCC-----eEEEEeCCCCcEEEccCCCCcccCCCcccEEE-EEeCCEEEEEcCCCCCCCCeeEEEeee
Q 043540 336 AVVNNELYAADHEKE-----EVRKFDKGRKLWRTLGRLPEQASSMNGWGLAF-RACGDQLIVIGGPRDSGGGIVELNGWV 409 (437)
Q Consensus 336 ~~~~~~ly~~gg~~~-----~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~-~~~~~~l~v~GG~~~~~~~~~~~~~~~ 409 (437)
+.+||.+|-+..... .|..||..+.+..+.-++|..... ......+ ++.+++|-++--. .....+++|+
T Consensus 2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~-~~~~~~L~~v~~~~L~~~~~~----~~~~~~~IWv 76 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDD-DDDSVSLSVVRGDCLCVLYQC----DETSKIEIWV 76 (164)
T ss_pred EEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCc-cCCEEEEEEecCCEEEEEEec----cCCccEEEEE
Confidence 568999998864321 599999999999444456654431 1112333 2337788887321 2233477887
Q ss_pred cCC---CCCCceec
Q 043540 410 PDE---GPPHWKLL 420 (437)
Q Consensus 410 ~d~---~~~~W~~l 420 (437)
.+. ....|+++
T Consensus 77 m~~~~~~~~SWtK~ 90 (164)
T PF07734_consen 77 MKKYGYGKESWTKL 90 (164)
T ss_pred EeeeccCcceEEEE
Confidence 652 37899987
No 161
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=78.16 E-value=36 Score=34.17 Aligned_cols=64 Identities=16% Similarity=0.163 Sum_probs=38.9
Q ss_pred EEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEE-ECCEEEEEeCCCCe
Q 043540 273 VFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV-VNNELYAADHEKEE 351 (437)
Q Consensus 273 ~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~~~ 351 (437)
.-.+.+|+|.-|++ ..+..||.....-+..-..-.+. .+++. -+|.+.++|...++
T Consensus 217 spsne~l~vsVG~D-------kki~~yD~~s~~s~~~l~y~~Pl----------------stvaf~~~G~~L~aG~s~G~ 273 (673)
T KOG4378|consen 217 SPSNEALLVSVGYD-------KKINIYDIRSQASTDRLTYSHPL----------------STVAFSECGTYLCAGNSKGE 273 (673)
T ss_pred cCCccceEEEeccc-------ceEEEeecccccccceeeecCCc----------------ceeeecCCceEEEeecCCce
Confidence 34488888888886 35888998754432211111111 11222 35677777777888
Q ss_pred EEEEeCCC
Q 043540 352 VRKFDKGR 359 (437)
Q Consensus 352 v~~yd~~~ 359 (437)
|+.||...
T Consensus 274 ~i~YD~R~ 281 (673)
T KOG4378|consen 274 LIAYDMRS 281 (673)
T ss_pred EEEEeccc
Confidence 99999864
No 162
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=78.04 E-value=77 Score=31.53 Aligned_cols=205 Identities=15% Similarity=0.151 Sum_probs=106.7
Q ss_pred EEeCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccce-eeEEEC--CEEEEEeccCCCCCCCceEEEEECCCCcE
Q 043540 181 LAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLF-GSASLG--EIAILAGGCDPRGKLLKSAELYNSITGTW 257 (437)
Q Consensus 181 ~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~-~~~~~~--~~iyv~GG~~~~~~~~~~~~~yd~~t~~W 257 (437)
++.+++.+++||.. +.+.++|+.|..=... +..-|... +.+... +.+|.++ . ..++-+++.+....
T Consensus 210 vS~Dgkylatgg~d--~~v~Iw~~~t~ehv~~--~~ghr~~V~~L~fr~gt~~lys~s-~------Drsvkvw~~~~~s~ 278 (479)
T KOG0299|consen 210 VSSDGKYLATGGRD--RHVQIWDCDTLEHVKV--FKGHRGAVSSLAFRKGTSELYSAS-A------DRSVKVWSIDQLSY 278 (479)
T ss_pred EcCCCcEEEecCCC--ceEEEecCcccchhhc--ccccccceeeeeeecCccceeeee-c------CCceEEEehhHhHH
Confidence 44578888898754 4567777766432221 22222211 222222 3555542 1 23455555543322
Q ss_pred EecCCCCcCCcCeeEE------EECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCC
Q 043540 258 MPISSMHKARKMCSGV------FMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEA 331 (437)
Q Consensus 258 ~~~~~~~~~r~~~~~~------~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (437)
. ...++|... .-.++...+||.+ .++..|++...+ +.+ ..++ .+.
T Consensus 279 v------etlyGHqd~v~~IdaL~reR~vtVGgrD-------rT~rlwKi~ees-qli------frg~---------~~s 329 (479)
T KOG0299|consen 279 V------ETLYGHQDGVLGIDALSRERCVTVGGRD-------RTVRLWKIPEES-QLI------FRGG---------EGS 329 (479)
T ss_pred H------HHHhCCccceeeechhcccceEEecccc-------ceeEEEeccccc-eee------eeCC---------CCC
Confidence 1 112222221 2246777788876 235555542211 111 0110 012
Q ss_pred CCEEEEECCEEEEEeCCCCeEEEEeCCCCcEEEccCC-----CC-cccCCCcccEEEEEeCC-EEEEEcCCCCCCCCeeE
Q 043540 332 PPLLAVVNNELYAADHEKEEVRKFDKGRKLWRTLGRL-----PE-QASSMNGWGLAFRACGD-QLIVIGGPRDSGGGIVE 404 (437)
Q Consensus 332 ~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~W~~v~~l-----p~-~~~~~~~~~~a~~~~~~-~l~v~GG~~~~~~~~~~ 404 (437)
.-+++.+|+.=|+.|...+.|..++..+++=..+..+ |. .....+.|-.+++++.+ .|+..|.. ..+
T Consensus 330 idcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~------~G~ 403 (479)
T KOG0299|consen 330 IDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSW------SGC 403 (479)
T ss_pred eeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCC------CCc
Confidence 2567889999999999888999998877763322222 22 11112236666666654 45555532 245
Q ss_pred EEeeecCCCCCCceecCccCCCceEee
Q 043540 405 LNGWVPDEGPPHWKLLARQPMCGFVFN 431 (437)
Q Consensus 405 ~~~~~~d~~~~~W~~l~~~p~~~~~~~ 431 (437)
+.+|.-...-.+-+.+-.+|...|..+
T Consensus 404 vrLW~i~~g~r~i~~l~~ls~~GfVNs 430 (479)
T KOG0299|consen 404 VRLWKIEDGLRAINLLYSLSLVGFVNS 430 (479)
T ss_pred eEEEEecCCccccceeeecccccEEEE
Confidence 778877766667777777776665543
No 163
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=76.94 E-value=9 Score=36.82 Aligned_cols=71 Identities=24% Similarity=0.272 Sum_probs=40.4
Q ss_pred CCEEEEEeccc--CCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE-CC--EEEEEeCCCC
Q 043540 276 DGKFYVIGGIG--EGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV-NN--ELYAADHEKE 350 (437)
Q Consensus 276 ~g~lyv~GG~~--~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~ly~~gg~~~ 350 (437)
.++|||+--.. +.....-..||+||+++++=-.--++..+ . -++.+- +. .||.+.....
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~--~--------------~Si~Vsqd~~P~L~~~~~~~~ 312 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP--I--------------DSIAVSQDDKPLLYALSAGDG 312 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE--E--------------SEEEEESSSS-EEEEEETTTT
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc--c--------------ceEEEccCCCcEEEEEcCCCC
Confidence 68999984322 23344567899999999863222121111 1 123443 33 5777765667
Q ss_pred eEEEEeCCCCcE
Q 043540 351 EVRKFDKGRKLW 362 (437)
Q Consensus 351 ~v~~yd~~~~~W 362 (437)
.+.+||..+.+-
T Consensus 313 ~l~v~D~~tGk~ 324 (342)
T PF06433_consen 313 TLDVYDAATGKL 324 (342)
T ss_dssp EEEEEETTT--E
T ss_pred eEEEEeCcCCcE
Confidence 899999999753
No 164
>PRK01742 tolB translocation protein TolB; Provisional
Probab=76.80 E-value=86 Score=31.43 Aligned_cols=140 Identities=11% Similarity=-0.016 Sum_probs=69.5
Q ss_pred CceEEEEECCCCceecCCCCCCCccceeeEEECC-EEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEE
Q 043540 196 GNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGE-IAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVF 274 (437)
Q Consensus 196 ~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~ 274 (437)
...++++|..++.-+.+...+.... .....-++ +|++....++. ..++.+|..++..+.+..-... .......
T Consensus 227 ~~~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG~~La~~~~~~g~----~~Iy~~d~~~~~~~~lt~~~~~-~~~~~wS 300 (429)
T PRK01742 227 KSQLVVHDLRSGARKVVASFRGHNG-APAFSPDGSRLAFASSKDGV----LNIYVMGANGGTPSQLTSGAGN-NTEPSWS 300 (429)
T ss_pred CcEEEEEeCCCCceEEEecCCCccC-ceeECCCCCEEEEEEecCCc----EEEEEEECCCCCeEeeccCCCC-cCCEEEC
Confidence 3578999998877665554332111 11222244 45444322221 4588889988877766432211 1112223
Q ss_pred ECCE-EEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCE-EEEEeCCCCeE
Q 043540 275 MDGK-FYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNE-LYAADHEKEEV 352 (437)
Q Consensus 275 ~~g~-lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ly~~gg~~~~v 352 (437)
-||+ |++..... ....++.+|...+.-+.+... . .. ....-+|+ |++.+. ..+
T Consensus 301 pDG~~i~f~s~~~-----g~~~I~~~~~~~~~~~~l~~~--~-~~---------------~~~SpDG~~ia~~~~--~~i 355 (429)
T PRK01742 301 PDGQSILFTSDRS-----GSPQVYRMSASGGGASLVGGR--G-YS---------------AQISADGKTLVMING--DNV 355 (429)
T ss_pred CCCCEEEEEECCC-----CCceEEEEECCCCCeEEecCC--C-CC---------------ccCCCCCCEEEEEcC--CCE
Confidence 3665 44443221 112466677665533333110 0 11 11122444 444432 568
Q ss_pred EEEeCCCCcEEEcc
Q 043540 353 RKFDKGRKLWRTLG 366 (437)
Q Consensus 353 ~~yd~~~~~W~~v~ 366 (437)
+.+|..+.++..+.
T Consensus 356 ~~~Dl~~g~~~~lt 369 (429)
T PRK01742 356 VKQDLTSGSTEVLS 369 (429)
T ss_pred EEEECCCCCeEEec
Confidence 88999999888764
No 165
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=76.75 E-value=1e+02 Score=32.26 Aligned_cols=191 Identities=13% Similarity=0.133 Sum_probs=89.2
Q ss_pred CceEEEeccCCCCeeeCCCCCCccccccCCceeEEe-CCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEE
Q 043540 148 LKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAV-GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSAS 226 (437)
Q Consensus 148 ~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~ 226 (437)
...++.|++.. .|...+.++.+...+. ..++-. +++||-.|. ...+-.||+.+..=+..-+.... .-.+++.
T Consensus 46 ~g~IEiwN~~~-~w~~~~vi~g~~drsI--E~L~W~e~~RLFS~g~---sg~i~EwDl~~lk~~~~~d~~gg-~IWsiai 118 (691)
T KOG2048|consen 46 DGNIEIWNLSN-NWFLEPVIHGPEDRSI--ESLAWAEGGRLFSSGL---SGSITEWDLHTLKQKYNIDSNGG-AIWSIAI 118 (691)
T ss_pred CCcEEEEccCC-CceeeEEEecCCCCce--eeEEEccCCeEEeecC---CceEEEEecccCceeEEecCCCc-ceeEEEe
Confidence 35578888876 6766555544433221 122333 788888774 33566677766543222111111 1112222
Q ss_pred E-CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEECCEEE-EEecccCCCCccCCeEEEEECCCC
Q 043540 227 L-GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFMDGKFY-VIGGIGEGSSAMLTDVEMYDLETG 304 (437)
Q Consensus 227 ~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~g~ly-v~GG~~~~~~~~~~~v~~yd~~~~ 304 (437)
. .+.+..+| |++ ..+..++...+.-+.-..++......-.+..+.... ++||... ..+-++|..++
T Consensus 119 ~p~~~~l~Ig-cdd-----Gvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D------g~Iriwd~~~~ 186 (691)
T KOG2048|consen 119 NPENTILAIG-CDD-----GVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID------GVIRIWDVKSG 186 (691)
T ss_pred CCccceEEee-cCC-----ceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccC------ceEEEEEcCCC
Confidence 2 23444443 321 123344444444333333333223333444455544 6666541 12666777766
Q ss_pred ceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCcEEE
Q 043540 305 KWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKLWRT 364 (437)
Q Consensus 305 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~W~~ 364 (437)
+=-.+-.|...+..-...+. . =++..+.+...+.|-..+.|..+|....+=.+
T Consensus 187 ~t~~~~~~~~d~l~k~~~~i------V-WSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiq 239 (691)
T KOG2048|consen 187 QTLHIITMQLDRLSKREPTI------V-WSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQ 239 (691)
T ss_pred ceEEEeeecccccccCCceE------E-EEEEEeecCcEEEecCCceEEEEcccCcchhh
Confidence 54443333322222000000 0 02334455555666677889999998865433
No 166
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=76.45 E-value=52 Score=32.34 Aligned_cols=136 Identities=10% Similarity=0.147 Sum_probs=70.8
Q ss_pred eEEEEECCCCceecCCCCCCCccceeeEEE-CCEEEEEeccCCCCCCCceEEEEECCC---CcEEecCCCCcCCcCeeEE
Q 043540 198 AIYRYNLLTNTWSTGMTMNTPRCLFGSASL-GEIAILAGGCDPRGKLLKSAELYNSIT---GTWMPISSMHKARKMCSGV 273 (437)
Q Consensus 198 ~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t---~~W~~~~~~~~~r~~~~~~ 273 (437)
.+..+|..|+.-+..-+-..+-+..+++-+ ++.-+|.|+-+ ..+...|..- +.|+-+.. ++-..-++
T Consensus 292 ~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~d------r~i~~wdlDgn~~~~W~gvr~---~~v~dlai 362 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPD------RTIIMWDLDGNILGNWEGVRD---PKVHDLAI 362 (519)
T ss_pred heeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCC------CcEEEecCCcchhhccccccc---ceeEEEEE
Confidence 356666666654443221122222233332 67778888754 3455566544 34765532 44445555
Q ss_pred EECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEE
Q 043540 274 FMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVR 353 (437)
Q Consensus 274 ~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~ 353 (437)
..||+-.++-+.+ ..+..|+.++..=..+-..-.+.. .....-++++.++.-...++.
T Consensus 363 t~Dgk~vl~v~~d-------~~i~l~~~e~~~dr~lise~~~it---------------s~~iS~d~k~~LvnL~~qei~ 420 (519)
T KOG0293|consen 363 TYDGKYVLLVTVD-------KKIRLYNREARVDRGLISEEQPIT---------------SFSISKDGKLALVNLQDQEIH 420 (519)
T ss_pred cCCCcEEEEEecc-------cceeeechhhhhhhccccccCcee---------------EEEEcCCCcEEEEEcccCeeE
Confidence 6666644443332 235566666543221111111111 112334788888877788999
Q ss_pred EEeCCCCcEEEcc
Q 043540 354 KFDKGRKLWRTLG 366 (437)
Q Consensus 354 ~yd~~~~~W~~v~ 366 (437)
.+|.+ .|+.+.
T Consensus 421 LWDl~--e~~lv~ 431 (519)
T KOG0293|consen 421 LWDLE--ENKLVR 431 (519)
T ss_pred Eeecc--hhhHHH
Confidence 99998 566554
No 167
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=76.41 E-value=73 Score=30.46 Aligned_cols=191 Identities=13% Similarity=0.139 Sum_probs=88.7
Q ss_pred eeeEEECCEEEEEecc--CC--CCCCCceEEEEE-CCCCcEEecCCC---C--cCC---cCeeEEEECCEEEEEecccCC
Q 043540 222 FGSASLGEIAILAGGC--DP--RGKLLKSAELYN-SITGTWMPISSM---H--KAR---KMCSGVFMDGKFYVIGGIGEG 288 (437)
Q Consensus 222 ~~~~~~~~~iyv~GG~--~~--~~~~~~~~~~yd-~~t~~W~~~~~~---~--~~r---~~~~~~~~~g~lyv~GG~~~~ 288 (437)
++.+.+++.|+++... .. .......+..|. ....+|+..... . ..| ...+.++-+++||++-|....
T Consensus 2 PSLV~vgGvv~AvAEa~~~~~~~~~~~~ias~~~~~~g~tw~~~~~~~~~~~~~~~v~v~rPTtvvkgn~IymLvG~y~~ 81 (310)
T PF13859_consen 2 PSLVEVGGVVFAVAEAQCKKSNDSGFTDIASEYSTDNGETWKAEVAVLNDDGSKKRVDVSRPTTVVKGNKIYMLVGSYSR 81 (310)
T ss_dssp EEEEEETTEEEEEEEEESS-S-SSS-EEEEEEEESSSSSS-EEEEEE----SS-TT-EEEEEEEEEETTEEEEEEEEESS
T ss_pred CCEEEECCEEEEEEEEEEccCCCCCceeEEEeEeeccccccccceeeecccccccccccceeeeeecceeEEEEEEEEec
Confidence 3567789999888762 21 122233334444 345579765321 1 112 245667779999998665411
Q ss_pred -CCccCCeEEEE--ECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEE--e----CC-CCeEEEEeCC
Q 043540 289 -SSAMLTDVEMY--DLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAA--D----HE-KEEVRKFDKG 358 (437)
Q Consensus 289 -~~~~~~~v~~y--d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~--g----g~-~~~v~~yd~~ 358 (437)
.......+..+ +....+|.....++.....+.. . ..++.+.+++.-||.|.+- + +. .-.+.+|...
T Consensus 82 ~~~~~~~~llLvks~~~g~~W~~~~~l~~~~~~~~~--~--figgGGSGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS~d 157 (310)
T PF13859_consen 82 SAGADDWGLLLVKSTDGGIKWGDTKSLPSTSFQSWK--Q--FIGGGGSGVVMEDGTLVFPVQATKKNGDGTVSLIIYSTD 157 (310)
T ss_dssp --SSTTEEEEEEEEESSSSEE---EE-GGGS-EEEE--E--EEE-SEE-EE-TTS-EEEEEEEEETT---EEEEEEEESS
T ss_pred cccccccceeeeeccCCcceeeecccCCchhccccc--e--eecCCCCceEEcCCCEEEEEeeeccCccceEEEEEEECC
Confidence 11112223333 2233469877655432211000 0 0111123344446665432 1 12 2467888887
Q ss_pred -CCcEEEccCCCCcccCCCcccEEEEEe-CCEEEEEcCCCCCCCCeeEEEeeecCCCCCCcee-cCccCC
Q 043540 359 -RKLWRTLGRLPEQASSMNGWGLAFRAC-GDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKL-LARQPM 425 (437)
Q Consensus 359 -~~~W~~v~~lp~~~~~~~~~~~a~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~-l~~~p~ 425 (437)
..+|..-..++.... ....++.- +++|+++.-+.. + ...+|+-.....+|++ ++.++.
T Consensus 158 ~g~~W~lskg~s~~gC----~~psv~EWe~gkLlM~~~c~~--g---~rrVYeS~DmG~tWtea~gtlsr 218 (310)
T PF13859_consen 158 DGKTWKLSKGMSPAGC----SDPSVVEWEDGKLLMMTACDD--G---RRRVYESGDMGTTWTEALGTLSR 218 (310)
T ss_dssp TTSS-EE-S----TT-----EEEEEEEE-TTEEEEEEE-TT--S------EEEESSTTSS-EE-TTTTTT
T ss_pred CccceEeccccCCCCc----ceEEEEeccCCeeEEEEeccc--c---eEEEEEEcccceehhhccCccce
Confidence 678998777765433 24566666 789999865542 1 2468887778899998 566653
No 168
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=76.29 E-value=92 Score=31.55 Aligned_cols=145 Identities=15% Similarity=0.173 Sum_probs=76.6
Q ss_pred CCEEEEEcCccCCceEEEEECCCC--ceecCCCCCCCccceeeEE-ECCEEEEEeccCCCCCCCceEEEEECCCCcEEec
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTN--TWSTGMTMNTPRCLFGSAS-LGEIAILAGGCDPRGKLLKSAELYNSITGTWMPI 260 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~--~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 260 (437)
++...+-|. ....+.+||...+ .-+.+....... ++++. -.+.+++.|+.+ .++.++|..+.+-...
T Consensus 214 d~~~l~s~s--~D~tiriwd~~~~~~~~~~l~gH~~~v--~~~~f~p~g~~i~Sgs~D------~tvriWd~~~~~~~~~ 283 (456)
T KOG0266|consen 214 DGSYLLSGS--DDKTLRIWDLKDDGRNLKTLKGHSTYV--TSVAFSPDGNLLVSGSDD------GTVRIWDVRTGECVRK 283 (456)
T ss_pred CCcEEEEec--CCceEEEeeccCCCeEEEEecCCCCce--EEEEecCCCCEEEEecCC------CcEEEEeccCCeEEEe
Confidence 455444333 2346788888443 223343333333 33332 245788888865 6688899988543322
Q ss_pred CCCCcCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCCceE---ecCCCCCcccCCCCcccccccCCCCCEE
Q 043540 261 SSMHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWT---QITDMFPARIGSDGVSVISAAGEAPPLL 335 (437)
Q Consensus 261 ~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (437)
+.......+++.+ ++.+++.+.++ ..+.+||+.++.-. .+........- ..+
T Consensus 284 --l~~hs~~is~~~f~~d~~~l~s~s~d-------~~i~vwd~~~~~~~~~~~~~~~~~~~~~--------------~~~ 340 (456)
T KOG0266|consen 284 --LKGHSDGISGLAFSPDGNLLVSASYD-------GTIRVWDLETGSKLCLKLLSGAENSAPV--------------TSV 340 (456)
T ss_pred --eeccCCceEEEEECCCCCEEEEcCCC-------ccEEEEECCCCceeeeecccCCCCCCce--------------eEE
Confidence 2222223333333 67888877654 35889999887743 22221111000 112
Q ss_pred EE-ECCEEEEEeCCCCeEEEEeCCCCc
Q 043540 336 AV-VNNELYAADHEKEEVRKFDKGRKL 361 (437)
Q Consensus 336 ~~-~~~~ly~~gg~~~~v~~yd~~~~~ 361 (437)
.. -+++..+.+...+.+..||..+..
T Consensus 341 ~fsp~~~~ll~~~~d~~~~~w~l~~~~ 367 (456)
T KOG0266|consen 341 QFSPNGKYLLSASLDRTLKLWDLRSGK 367 (456)
T ss_pred EECCCCcEEEEecCCCeEEEEEccCCc
Confidence 22 245555555556678888877543
No 169
>PTZ00420 coronin; Provisional
Probab=76.09 E-value=1.1e+02 Score=32.15 Aligned_cols=151 Identities=11% Similarity=0.179 Sum_probs=73.5
Q ss_pred EEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeE-EECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCC
Q 043540 186 ELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSA-SLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMH 264 (437)
Q Consensus 186 ~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~ 264 (437)
.+++.|+. ...+.+||..+.+=. ..+..+....++. ..++.+++.++.+ ..+.+||+.+++= +..+.
T Consensus 139 ~iLaSgS~--DgtIrIWDl~tg~~~--~~i~~~~~V~SlswspdG~lLat~s~D------~~IrIwD~Rsg~~--i~tl~ 206 (568)
T PTZ00420 139 YIMCSSGF--DSFVNIWDIENEKRA--FQINMPKKLSSLKWNIKGNLLSGTCVG------KHMHIIDPRKQEI--ASSFH 206 (568)
T ss_pred eEEEEEeC--CCeEEEEECCCCcEE--EEEecCCcEEEEEECCCCCEEEEEecC------CEEEEEECCCCcE--EEEEe
Confidence 44445543 346788898776421 1111111112222 2356777766533 5688999987642 22222
Q ss_pred cCC--cCeeEEE-----ECCEEEEEecccCCCCccCCeEEEEECCCC-ceEecCCCCCcccCCCCcccccccCCCCCEEE
Q 043540 265 KAR--KMCSGVF-----MDGKFYVIGGIGEGSSAMLTDVEMYDLETG-KWTQITDMFPARIGSDGVSVISAAGEAPPLLA 336 (437)
Q Consensus 265 ~~r--~~~~~~~-----~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~-~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (437)
... .....+. -++...+.+|.+ ......+..||+.+. .-...-.+.. ..+ ..+.
T Consensus 207 gH~g~~~s~~v~~~~fs~d~~~IlTtG~d---~~~~R~VkLWDlr~~~~pl~~~~ld~-~~~--------------~L~p 268 (568)
T PTZ00420 207 IHDGGKNTKNIWIDGLGGDDNYILSTGFS---KNNMREMKLWDLKNTTSALVTMSIDN-ASA--------------PLIP 268 (568)
T ss_pred cccCCceeEEEEeeeEcCCCCEEEEEEcC---CCCccEEEEEECCCCCCceEEEEecC-Ccc--------------ceEE
Confidence 111 1111121 245566666654 112235888998742 1100000000 000 1111
Q ss_pred E---ECCEEEEEeCCCCeEEEEeCCCCcEEEcc
Q 043540 337 V---VNNELYAADHEKEEVRKFDKGRKLWRTLG 366 (437)
Q Consensus 337 ~---~~~~ly~~gg~~~~v~~yd~~~~~W~~v~ 366 (437)
. -+|.+|+.|.....|+.|+...+.-..+.
T Consensus 269 ~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~ 301 (568)
T PTZ00420 269 HYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVN 301 (568)
T ss_pred eeeCCCCCEEEEEECCCeEEEEEccCCcEEeec
Confidence 2 24888999877788999998776544443
No 170
>PRK03629 tolB translocation protein TolB; Provisional
Probab=75.78 E-value=92 Score=31.26 Aligned_cols=117 Identities=16% Similarity=0.059 Sum_probs=61.5
Q ss_pred CEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEECC-EEEEEeccCCCCCCCceEEEEECCCCcEEecCCC
Q 043540 185 TELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGE-IAILAGGCDPRGKLLKSAELYNSITGTWMPISSM 263 (437)
Q Consensus 185 ~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 263 (437)
..|++.........++++|..+++.+++..-... .......-++ .|+...... + ...++.+|..++.-+.+...
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~-~~~~~wSPDG~~I~f~s~~~--g--~~~Iy~~d~~~g~~~~lt~~ 329 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSN-NTEPTWFPDSQNLAYTSDQA--G--RPQVYKVNINGGAPQRITWE 329 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCC-cCceEECCCCCEEEEEeCCC--C--CceEEEEECCCCCeEEeecC
Confidence 3455443222334699999999888776543221 1111122244 444433221 1 24788889988776665322
Q ss_pred CcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCC
Q 043540 264 HKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITD 311 (437)
Q Consensus 264 ~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~ 311 (437)
.. ........-||+..++.+.. .. ...++.+|+.++.++.+..
T Consensus 330 ~~-~~~~~~~SpDG~~Ia~~~~~--~g--~~~I~~~dl~~g~~~~Lt~ 372 (429)
T PRK03629 330 GS-QNQDADVSSDGKFMVMVSSN--GG--QQHIAKQDLATGGVQVLTD 372 (429)
T ss_pred CC-CccCEEECCCCCEEEEEEcc--CC--CceEEEEECCCCCeEEeCC
Confidence 11 11122223366544443322 11 2358889999999887763
No 171
>PRK10115 protease 2; Provisional
Probab=75.47 E-value=1.2e+02 Score=32.57 Aligned_cols=150 Identities=8% Similarity=-0.071 Sum_probs=77.4
Q ss_pred CCceEEEEEC--CCCceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECC-CCcEEecCCCCcCCcCee
Q 043540 195 HGNAIYRYNL--LTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSI-TGTWMPISSMHKARKMCS 271 (437)
Q Consensus 195 ~~~~v~~yd~--~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~-t~~W~~~~~~~~~r~~~~ 271 (437)
..+.++.|+. .+..|..+.+.+.. ..+.....++.+|+.--.+.. ...+...+.. ++.|+.+-+....+.--.
T Consensus 245 ~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ly~~tn~~~~---~~~l~~~~~~~~~~~~~l~~~~~~~~i~~ 320 (686)
T PRK10115 245 TTSEVLLLDAELADAEPFVFLPRRKD-HEYSLDHYQHRFYLRSNRHGK---NFGLYRTRVRDEQQWEELIPPRENIMLEG 320 (686)
T ss_pred ccccEEEEECcCCCCCceEEEECCCC-CEEEEEeCCCEEEEEEcCCCC---CceEEEecCCCcccCeEEECCCCCCEEEE
Confidence 4456777773 23444333222221 112333456788887543322 2446666766 578988765433333334
Q ss_pred EEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecC-CCCCcccCCCCcccccccCCCCCEE-EEE-CCEEEEEeC-
Q 043540 272 GVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQIT-DMFPARIGSDGVSVISAAGEAPPLL-AVV-NNELYAADH- 347 (437)
Q Consensus 272 ~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~ly~~gg- 347 (437)
....++.|++..-.. ....+..+|+.++....+. ..+..... ... ... ++.+++.-.
T Consensus 321 ~~~~~~~l~~~~~~~-----g~~~l~~~~~~~~~~~~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~ss 381 (686)
T PRK10115 321 FTLFTDWLVVEERQR-----GLTSLRQINRKTREVIGIAFDDPAYVTW--------------IAYNPEPETSRLRYGYSS 381 (686)
T ss_pred EEEECCEEEEEEEeC-----CEEEEEEEcCCCCceEEecCCCCceEee--------------ecccCCCCCceEEEEEec
Confidence 445577777764332 2334778887665555543 11111000 000 001 244444322
Q ss_pred --CCCeEEEEeCCCCcEEEccC
Q 043540 348 --EKEEVRKFDKGRKLWRTLGR 367 (437)
Q Consensus 348 --~~~~v~~yd~~~~~W~~v~~ 367 (437)
....++.||+.+++|+.+..
T Consensus 382 ~~~P~~~y~~d~~~~~~~~l~~ 403 (686)
T PRK10115 382 MTTPDTLFELDMDTGERRVLKQ 403 (686)
T ss_pred CCCCCEEEEEECCCCcEEEEEe
Confidence 35689999999999887754
No 172
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=74.71 E-value=51 Score=31.82 Aligned_cols=99 Identities=9% Similarity=0.068 Sum_probs=49.9
Q ss_pred ceEEEeccCCCCeeeCCCCCCccccccCCceeEE-eCCEEEEEcC-------ccCCceEEEEECCCCcee---cCCCC--
Q 043540 149 KEWEAFDPIHHRWMHLPPMNASDCFMCADKESLA-VGTELLVFGK-------EVHGNAIYRYNLLTNTWS---TGMTM-- 215 (437)
Q Consensus 149 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~-~~~~lyv~GG-------~~~~~~v~~yd~~t~~W~---~~~~~-- 215 (437)
..++.||..+++-.-+ ++..... +.+++ -+..+|+..- +..+..+.+||..|-+-+ .+|+-
T Consensus 17 ~rv~viD~d~~k~lGm--i~~g~~~----~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R 90 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGM--IDTGFLG----NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPR 90 (342)
T ss_dssp EEEEEEETTTTEEEEE--EEEESSE----EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B
T ss_pred ceEEEEECCCCcEEEE--eecccCC----ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcch
Confidence 3578888887774321 1111110 11122 2455665431 223467899999987543 23321
Q ss_pred -CC-C-ccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEE
Q 043540 216 -NT-P-RCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWM 258 (437)
Q Consensus 216 -~~-~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~ 258 (437)
.. + +..++...-+..+||. -. ....++-+-|.+.++-.
T Consensus 91 ~~~~~~~~~~~ls~dgk~~~V~-N~----TPa~SVtVVDl~~~kvv 131 (342)
T PF06433_consen 91 AQVVPYKNMFALSADGKFLYVQ-NF----TPATSVTVVDLAAKKVV 131 (342)
T ss_dssp --BS--GGGEEE-TTSSEEEEE-EE----SSSEEEEEEETTTTEEE
T ss_pred heecccccceEEccCCcEEEEE-cc----CCCCeEEEEECCCCcee
Confidence 11 1 1112222224466666 22 35688999999998864
No 173
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=73.87 E-value=72 Score=29.18 Aligned_cols=143 Identities=14% Similarity=0.092 Sum_probs=74.6
Q ss_pred CCceecCCCCCC-----CccceeeEE-ECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE--CC
Q 043540 206 TNTWSTGMTMNT-----PRCLFGSAS-LGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM--DG 277 (437)
Q Consensus 206 t~~W~~~~~~~~-----~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~g 277 (437)
...|+..+||.. |-.+.-... -.+.|+.+||- ..++..|.++++-+..-.-. .-+-|+.+.- ++
T Consensus 98 K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD-------~~~y~~dlE~G~i~r~~rGH-tDYvH~vv~R~~~~ 169 (325)
T KOG0649|consen 98 KRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD-------GVIYQVDLEDGRIQREYRGH-TDYVHSVVGRNANG 169 (325)
T ss_pred hhhhhhcCccccCcccCCccceeEeccCCCcEEEecCC-------eEEEEEEecCCEEEEEEcCC-cceeeeeeecccCc
Confidence 446877766543 222221111 25788888872 56788999999876542111 1123343331 34
Q ss_pred EEEEEecccCCCCccCCeEEEEECCCCceEec-CCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEe
Q 043540 278 KFYVIGGIGEGSSAMLTDVEMYDLETGKWTQI-TDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFD 356 (437)
Q Consensus 278 ~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd 356 (437)
.|+ .|+.+ ..+-.+|.++.+=.++ .+.-.+- ...|..+.|. .+...+....++||. ..+-.++
T Consensus 170 qil-sG~ED-------GtvRvWd~kt~k~v~~ie~yk~~~------~lRp~~g~wi-gala~~edWlvCGgG-p~lslwh 233 (325)
T KOG0649|consen 170 QIL-SGAED-------GTVRVWDTKTQKHVSMIEPYKNPN------LLRPDWGKWI-GALAVNEDWLVCGGG-PKLSLWH 233 (325)
T ss_pred cee-ecCCC-------ccEEEEeccccceeEEeccccChh------hcCcccCcee-EEEeccCceEEecCC-CceeEEe
Confidence 443 34433 2477788888765433 2211110 0112223332 345556666677653 4466777
Q ss_pred CCCCcEEEccCCCCcc
Q 043540 357 KGRKLWRTLGRLPEQA 372 (437)
Q Consensus 357 ~~~~~W~~v~~lp~~~ 372 (437)
....+=+.+-++|.+.
T Consensus 234 Lrsse~t~vfpipa~v 249 (325)
T KOG0649|consen 234 LRSSESTCVFPIPARV 249 (325)
T ss_pred ccCCCceEEEecccce
Confidence 7777777666665543
No 174
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=73.59 E-value=73 Score=29.13 Aligned_cols=87 Identities=17% Similarity=0.198 Sum_probs=52.6
Q ss_pred CcEEecCCCCc-----CCcCeeEEE-ECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCccccccc
Q 043540 255 GTWMPISSMHK-----ARKMCSGVF-MDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAA 328 (437)
Q Consensus 255 ~~W~~~~~~~~-----~r~~~~~~~-~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 328 (437)
.-|+..++|.. |-.....+. -.+.|+..||.. .++..|+++++.+..-. +|+
T Consensus 99 ~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~--------~~y~~dlE~G~i~r~~r------GHt-------- 156 (325)
T KOG0649|consen 99 RLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDG--------VIYQVDLEDGRIQREYR------GHT-------- 156 (325)
T ss_pred hhhhhcCccccCcccCCccceeEeccCCCcEEEecCCe--------EEEEEEecCCEEEEEEc------CCc--------
Confidence 34877766653 222222222 357888888865 68999999998876631 210
Q ss_pred CCCCCEEEEE--CCEEEEEeCCCCeEEEEeCCCCcEEEc
Q 043540 329 GEAPPLLAVV--NNELYAADHEKEEVRKFDKGRKLWRTL 365 (437)
Q Consensus 329 ~~~~~~~~~~--~~~ly~~gg~~~~v~~yd~~~~~W~~v 365 (437)
.+-|+++.- +++| +-|+....+.++|.++.+-..+
T Consensus 157 -DYvH~vv~R~~~~qi-lsG~EDGtvRvWd~kt~k~v~~ 193 (325)
T KOG0649|consen 157 -DYVHSVVGRNANGQI-LSGAEDGTVRVWDTKTQKHVSM 193 (325)
T ss_pred -ceeeeeeecccCcce-eecCCCccEEEEeccccceeEE
Confidence 111444442 3444 4466677899999999876554
No 175
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=73.49 E-value=8.9 Score=36.36 Aligned_cols=54 Identities=19% Similarity=0.266 Sum_probs=42.2
Q ss_pred CEEEEECCEEEEEeCCCCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcC
Q 043540 333 PLLAVVNNELYAADHEKEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGG 394 (437)
Q Consensus 333 ~~~~~~~~~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG 394 (437)
++--.++|+||+......++..+|+++++...|..+|...+ |.++. |.+.++|-
T Consensus 206 hSPRWhdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~r-----GL~f~---G~llvVgm 259 (335)
T TIGR03032 206 HSPRWYQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTR-----GLAFA---GDFAFVGL 259 (335)
T ss_pred cCCcEeCCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCc-----cccee---CCEEEEEe
Confidence 33456799999999888999999999999999999987665 45543 55666664
No 176
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=72.72 E-value=77 Score=29.02 Aligned_cols=92 Identities=17% Similarity=0.177 Sum_probs=61.3
Q ss_pred eEEEEECCCCcEEecCCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEEC----CCCceEecCCCCCcccCCCC
Q 043540 246 SAELYNSITGTWMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDL----ETGKWTQITDMFPARIGSDG 321 (437)
Q Consensus 246 ~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~----~~~~W~~~~~~~~~~~~~~~ 321 (437)
.+.......+.|.+=|... ++++|++.+.. ...+..|.. ..+.|...-.+|....+
T Consensus 11 ~~~~~~~~~GsWmrDpl~~-----------~~r~~~~~~~~------~~~l~E~~~~~~~~~~~~~~~~~lp~~~~g--- 70 (249)
T KOG3545|consen 11 TVKTAGPRFGAWMRDPLPA-----------DDRIYVMNYFD------GLMLTEYTNLEDFKRGRKAEKYRLPYSWDG--- 70 (249)
T ss_pred EEEeeccccceeecCCCcc-----------cCceEEecccc------CceEEEeccHHHhhccCcceEEeCCCCccc---
Confidence 3444555667786543222 77888885443 223444543 44567777677777777
Q ss_pred cccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCc---EEEccCC
Q 043540 322 VSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKL---WRTLGRL 368 (437)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~---W~~v~~l 368 (437)
.+-++++|.+|.-...+..|.+||.++.. |..++.+
T Consensus 71 -----------Tg~VVynGs~yynk~~t~~ivky~l~~~~~~~~~~lp~a 109 (249)
T KOG3545|consen 71 -----------TGHVVYNGSLYYNKAGTRNIIKYDLETRTVAGSAALPYA 109 (249)
T ss_pred -----------cceEEEcceEEeeccCCcceEEEEeecceeeeeeecccc
Confidence 56799999999998888889999998843 5555433
No 177
>PRK02889 tolB translocation protein TolB; Provisional
Probab=72.35 E-value=1.1e+02 Score=30.63 Aligned_cols=146 Identities=6% Similarity=-0.005 Sum_probs=70.8
Q ss_pred CceEEEEECCCCceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE
Q 043540 196 GNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM 275 (437)
Q Consensus 196 ~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 275 (437)
...++.+|......+.+..-..+ ......+-+++.+++..... + ...++++|..+++=+.+...+.. .......-
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~~~-v~~p~wSPDG~~la~~s~~~-~--~~~I~~~dl~~g~~~~l~~~~g~-~~~~~~SP 249 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSPEP-IISPAWSPDGTKLAYVSFES-K--KPVVYVHDLATGRRRVVANFKGS-NSAPAWSP 249 (427)
T ss_pred ccEEEEECCCCCCceEeccCCCC-cccceEcCCCCEEEEEEccC-C--CcEEEEEECCCCCEEEeecCCCC-ccceEECC
Confidence 35788888754444443321111 11112222443333333221 1 25689999988875555443321 11222233
Q ss_pred CC-EEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCE-EEEEeC--CCCe
Q 043540 276 DG-KFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNE-LYAADH--EKEE 351 (437)
Q Consensus 276 ~g-~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ly~~gg--~~~~ 351 (437)
|| +|++..... ....++.+|+.++..+.+..-...... ....-+|+ |+.... ....
T Consensus 250 DG~~la~~~~~~-----g~~~Iy~~d~~~~~~~~lt~~~~~~~~---------------~~wSpDG~~l~f~s~~~g~~~ 309 (427)
T PRK02889 250 DGRTLAVALSRD-----GNSQIYTVNADGSGLRRLTQSSGIDTE---------------PFFSPDGRSIYFTSDRGGAPQ 309 (427)
T ss_pred CCCEEEEEEccC-----CCceEEEEECCCCCcEECCCCCCCCcC---------------eEEcCCCCEEEEEecCCCCcE
Confidence 55 455443322 124688899887776665431111111 12223454 444332 2346
Q ss_pred EEEEeCCCCcEEEcc
Q 043540 352 VRKFDKGRKLWRTLG 366 (437)
Q Consensus 352 v~~yd~~~~~W~~v~ 366 (437)
|+.+|..++..+.+.
T Consensus 310 Iy~~~~~~g~~~~lt 324 (427)
T PRK02889 310 IYRMPASGGAAQRVT 324 (427)
T ss_pred EEEEECCCCceEEEe
Confidence 888888877777664
No 178
>PTZ00420 coronin; Provisional
Probab=71.91 E-value=1.3e+02 Score=31.42 Aligned_cols=24 Identities=8% Similarity=0.192 Sum_probs=19.3
Q ss_pred ECCEEEEEeCCCCeEEEEeCCCCc
Q 043540 338 VNNELYAADHEKEEVRKFDKGRKL 361 (437)
Q Consensus 338 ~~~~ly~~gg~~~~v~~yd~~~~~ 361 (437)
.+|.+++.++..+.|.+||+.+.+
T Consensus 177 pdG~lLat~s~D~~IrIwD~Rsg~ 200 (568)
T PTZ00420 177 IKGNLLSGTCVGKHMHIIDPRKQE 200 (568)
T ss_pred CCCCEEEEEecCCEEEEEECCCCc
Confidence 368888888777889999998764
No 179
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=71.31 E-value=1.7e+02 Score=32.35 Aligned_cols=167 Identities=13% Similarity=0.093 Sum_probs=95.3
Q ss_pred ceEEEEECCCCceecCCCCCCCcccee--eE--EE--C-CEEEEEecc----CCCCCCCceEEEEECCC-CcEEecCCCC
Q 043540 197 NAIYRYNLLTNTWSTGMTMNTPRCLFG--SA--SL--G-EIAILAGGC----DPRGKLLKSAELYNSIT-GTWMPISSMH 264 (437)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~~~~r~~~~--~~--~~--~-~~iyv~GG~----~~~~~~~~~~~~yd~~t-~~W~~~~~~~ 264 (437)
..+-+||. |+.+.+......++..+ .. .+ + +..|++|-. +........+.+|..+. ++-+.+..+.
T Consensus 750 s~l~vlD~--nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~ 827 (1096)
T KOG1897|consen 750 SFLRVLDQ--NTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETV 827 (1096)
T ss_pred EEEEEecC--CceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeee
Confidence 34566775 44444443333333222 22 12 2 566777641 12222345566666655 7777777777
Q ss_pred cCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecC-CCCCcccCCCCcccccccCCCCCEEEEECCEEE
Q 043540 265 KARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQIT-DMFPARIGSDGVSVISAAGEAPPLLAVVNNELY 343 (437)
Q Consensus 265 ~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly 343 (437)
..-.-.+.+.+||++.+-=|. .+-.|+..+++=-.+. +...+-.. -.+-+.++.|+
T Consensus 828 v~Gav~aL~~fngkllA~In~---------~vrLye~t~~~eLr~e~~~~~~~~a--------------L~l~v~gdeI~ 884 (1096)
T KOG1897|consen 828 VKGAVYALVEFNGKLLAGINQ---------SVRLYEWTTERELRIECNISNPIIA--------------LDLQVKGDEIA 884 (1096)
T ss_pred eccceeehhhhCCeEEEecCc---------EEEEEEccccceehhhhcccCCeEE--------------EEEEecCcEEE
Confidence 766667778889998774333 3777876665211111 11111100 12334577888
Q ss_pred EEeCC-CCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEc
Q 043540 344 AADHE-KEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIG 393 (437)
Q Consensus 344 ~~gg~-~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~G 393 (437)
+.+-. .-.+..|+...+...++++--.+. |-.++-.+++..|+.+
T Consensus 885 VgDlm~Sitll~y~~~eg~f~evArD~~p~-----Wmtaveil~~d~ylga 930 (1096)
T KOG1897|consen 885 VGDLMRSITLLQYKGDEGNFEEVARDYNPN-----WMTAVEILDDDTYLGA 930 (1096)
T ss_pred EeeccceEEEEEEeccCCceEEeehhhCcc-----ceeeEEEecCceEEee
Confidence 77643 346889999999999998644443 5567777788888765
No 180
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=70.73 E-value=1e+02 Score=29.67 Aligned_cols=101 Identities=12% Similarity=0.231 Sum_probs=54.1
Q ss_pred CEEEEE-CCEEEEEeCCC--CeEEEEe--CCCCcEEEccCCCCc------ccCCCcc-cEEEEEe---CCEEEEEcCCCC
Q 043540 333 PLLAVV-NNELYAADHEK--EEVRKFD--KGRKLWRTLGRLPEQ------ASSMNGW-GLAFRAC---GDQLIVIGGPRD 397 (437)
Q Consensus 333 ~~~~~~-~~~ly~~gg~~--~~v~~yd--~~~~~W~~v~~lp~~------~~~~~~~-~~a~~~~---~~~l~v~GG~~~ 397 (437)
+.++.. +|+|+++--.. .....+- -...+|......... .....+. +..+..- +..++++.....
T Consensus 201 ~~i~el~dG~l~~~~R~~~~~~~~~~~S~D~G~tWs~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~g~~~ll~~~~~~ 280 (351)
T cd00260 201 CSVVELSDGKLYMYTRDNSGGRRPVYESRDMGTTWTEALGTLSRVWGNCPTRCGSGVQGSFITATIESGKKVMLLSRPNS 280 (351)
T ss_pred CEEEEecCCEEEEEEeeCCCCcEEEEEEcCCCcCcccCcCCccccccccccCCCCcccceEEEeEecCCCEEEEEeCCCC
Confidence 556777 89988874221 2232222 234689987544331 0111111 2222222 446777765443
Q ss_pred CCCCeeEEEeeecCCCCCCceecCccCCCc--eEeeeEE
Q 043540 398 SGGGIVELNGWVPDEGPPHWKLLARQPMCG--FVFNCTV 434 (437)
Q Consensus 398 ~~~~~~~~~~~~~d~~~~~W~~l~~~p~~~--~~~~~~v 434 (437)
. .......+|.-+....+|.....+..+. ..|++..
T Consensus 281 ~-~~R~~l~l~~s~d~g~~w~~~~~i~~~~~~~~Ys~~~ 318 (351)
T cd00260 281 P-DSRSNLTLWLTDNNGSRWLDVGPISNGTDGSGYSTLT 318 (351)
T ss_pred C-CCCCceEEEEEeCCCceEEeeeeeccCCCceEEeeee
Confidence 2 3344556676655568999988776665 6777643
No 181
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=70.36 E-value=28 Score=28.61 Aligned_cols=106 Identities=11% Similarity=0.122 Sum_probs=56.5
Q ss_pred ccEEEEEecCceEEEeccCCCC-----ee-eCCCCCCccccccCCceeE----EeCCEEEEEcCccCCceEEEEECCCCc
Q 043540 139 EHWVYFSCKLKEWEAFDPIHHR-----WM-HLPPMNASDCFMCADKESL----AVGTELLVFGKEVHGNAIYRYNLLTNT 208 (437)
Q Consensus 139 ~~~l~~~~~~~~~~~yDp~~~~-----W~-~l~~~p~~~~~~~~~~~~~----~~~~~lyv~GG~~~~~~v~~yd~~t~~ 208 (437)
.|.|...+....+..|+|.... +. .+..|...+...+. +.. ..+..++++| ..+.+..||...|+
T Consensus 10 ~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~ital--aaG~l~~~~~~D~LliG---t~t~llaYDV~~N~ 84 (136)
T PF14781_consen 10 HPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITAL--AAGRLKPDDGRDCLLIG---TQTSLLAYDVENNS 84 (136)
T ss_pred ceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEE--EEEecCCCCCcCEEEEe---ccceEEEEEcccCc
Confidence 4566666677889999988653 11 11112111111110 001 1235677777 56789999999886
Q ss_pred ---eecCCCCCCCccceeeEEE---CCEEEEEeccCCCCCCCceEEEEECCCCc--EEe
Q 043540 209 ---WSTGMTMNTPRCLFGSASL---GEIAILAGGCDPRGKLLKSAELYNSITGT--WMP 259 (437)
Q Consensus 209 ---W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~ 259 (437)
++++++ .-.......+ ...+.++||. .++.-||.+-+. |+.
T Consensus 85 d~Fyke~~D---Gvn~i~~g~~~~~~~~l~ivGGn-------csi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 85 DLFYKEVPD---GVNAIVIGKLGDIPSPLVIVGGN-------CSIQGFDYEGNEIFWTV 133 (136)
T ss_pred hhhhhhCcc---ceeEEEEEecCCCCCcEEEECce-------EEEEEeCCCCcEEEEEe
Confidence 444442 2111122222 4578888883 556667765543 654
No 182
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=68.60 E-value=47 Score=29.68 Aligned_cols=100 Identities=21% Similarity=0.369 Sum_probs=61.2
Q ss_pred eEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCC
Q 043540 271 SGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKE 350 (437)
Q Consensus 271 ~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~ 350 (437)
+....||+||..-|.- ..+.+.++|+.+++=..-.++++++..+ -++...++.+|.+-...+
T Consensus 50 GL~~~~g~i~esTG~y-----g~S~ir~~~L~~gq~~~s~~l~~~~~Fg-------------EGit~~gd~~y~LTw~eg 111 (262)
T COG3823 50 GLEYLDGHILESTGLY-----GFSKIRVSDLTTGQEIFSEKLAPDTVFG-------------EGITKLGDYFYQLTWKEG 111 (262)
T ss_pred ceeeeCCEEEEecccc-----ccceeEEEeccCceEEEEeecCCccccc-------------cceeeccceEEEEEeccc
Confidence 3456688888876654 2356889999976643333343333321 568999999999987777
Q ss_pred eEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCC
Q 043540 351 EVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGP 395 (437)
Q Consensus 351 ~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~ 395 (437)
.-++||+.+ .+.++..+.. ..|||.+ .-+..|++--|.
T Consensus 112 vaf~~d~~t--~~~lg~~~y~---GeGWgLt--~d~~~LimsdGs 149 (262)
T COG3823 112 VAFKYDADT--LEELGRFSYE---GEGWGLT--SDDKNLIMSDGS 149 (262)
T ss_pred eeEEEChHH--hhhhcccccC---Ccceeee--cCCcceEeeCCc
Confidence 788888765 4444443332 2345543 344455555453
No 183
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=68.39 E-value=1e+02 Score=28.55 Aligned_cols=201 Identities=14% Similarity=0.172 Sum_probs=95.1
Q ss_pred EEeCCEEEEE--cC----ccCCceEEEEECC-CCceecC---C----CCCC-CccceeeEEECCEEEEEecc-CCCCCCC
Q 043540 181 LAVGTELLVF--GK----EVHGNAIYRYNLL-TNTWSTG---M----TMNT-PRCLFGSASLGEIAILAGGC-DPRGKLL 244 (437)
Q Consensus 181 ~~~~~~lyv~--GG----~~~~~~v~~yd~~-t~~W~~~---~----~~~~-~r~~~~~~~~~~~iyv~GG~-~~~~~~~ 244 (437)
.+.++-||.- +| -......|+-.-. -++|+.- . .-|. .-.++++.++++++|.+=-. +-.+..+
T Consensus 22 FVy~~VIYAPfM~~~RHGv~~LhvaWVkSgDdG~TWttPEwLtd~H~~yptvnyHCmSMGv~~NRLfa~iEtR~~a~~km 101 (367)
T PF12217_consen 22 FVYDNVIYAPFMAGDRHGVDNLHVAWVKSGDDGQTWTTPEWLTDLHPDYPTVNYHCMSMGVVGNRLFAVIETRTVASNKM 101 (367)
T ss_dssp EEETTEEEEEEEEESSSSSTT-EEEEEEESSTTSS----EESS---TTTTTEEEE-B-EEEETTEEEEEEEEEETTT--E
T ss_pred eeecCeeecccccccccCccceEEEEEEecCCCCcccCchhhhhcCCCCCccceeeeeeeeecceeeEEEeehhhhhhhh
Confidence 6677888752 32 2233445555443 3577642 2 2222 12345778899999976542 2223345
Q ss_pred ceEEEEE---CCCCcEEec--CCCCc-------CCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecC--
Q 043540 245 KSAELYN---SITGTWMPI--SSMHK-------ARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQIT-- 310 (437)
Q Consensus 245 ~~~~~yd---~~t~~W~~~--~~~~~-------~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~-- 310 (437)
...+.|| ...+.|+.. +..+. .-..|+-+.+++.-|.+|-.+ +......-...|-.. .|..-.
T Consensus 102 ~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHn-GD~sPRe~G~~yfs~--~~~sp~~~ 178 (367)
T PF12217_consen 102 VRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHN-GDVSPRELGFLYFSD--AFASPGVF 178 (367)
T ss_dssp EEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE--SSSS-EEEEEEETT--TTT-TT--
T ss_pred hhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEecc-CCCCcceeeEEEecc--cccCCcce
Confidence 6667776 467789753 33333 223577788888888886554 222222222333221 121110
Q ss_pred ---CCCCcccCCCCcccccccCCCCCEEEEECCEEEEEe--C----CCCeEEEEeCCCCcEEEccCCCCcccCCCcccEE
Q 043540 311 ---DMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAAD--H----EKEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLA 381 (437)
Q Consensus 311 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~g--g----~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a 381 (437)
.++..... ...-+++-.++|.||+.. - .+..+.+-+.....|..+- +|.... --.+-
T Consensus 179 vrr~i~sey~~----------~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slr-fp~nvH---htnlP 244 (367)
T PF12217_consen 179 VRRIIPSEYER----------NASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLR-FPNNVH---HTNLP 244 (367)
T ss_dssp EEEE--GGG-T----------TEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE--TT------SS---
T ss_pred eeeechhhhcc----------ccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhcc-cccccc---ccCCC
Confidence 11111111 001156778999999984 1 1346777777888898874 333221 12456
Q ss_pred EEEeCCEEEEEcCCCCC
Q 043540 382 FRACGDQLIVIGGPRDS 398 (437)
Q Consensus 382 ~~~~~~~l~v~GG~~~~ 398 (437)
++..+|.||+||..+..
T Consensus 245 FakvgD~l~mFgsERA~ 261 (367)
T PF12217_consen 245 FAKVGDVLYMFGSERAE 261 (367)
T ss_dssp EEEETTEEEEEEE-SST
T ss_pred ceeeCCEEEEEeccccc
Confidence 77889999999976643
No 184
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=68.35 E-value=98 Score=28.45 Aligned_cols=178 Identities=12% Similarity=0.112 Sum_probs=86.8
Q ss_pred ceEEEEECCCCceecCCCCCCCccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEE
Q 043540 197 NAIYRYNLLTNTWSTGMTMNTPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVF 274 (437)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~ 274 (437)
..+-.||..++.=..+...-..+.+..++.+ +++-...||.| ..+-+.|...-.-.+.-..+. ....++
T Consensus 61 qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseD------gt~kIWdlR~~~~qR~~~~~s---pVn~vv 131 (311)
T KOG0315|consen 61 QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSED------GTVKIWDLRSLSCQRNYQHNS---PVNTVV 131 (311)
T ss_pred CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCC------ceEEEEeccCcccchhccCCC---CcceEE
Confidence 4577899888754444333344455555544 56666666654 345666765532222211221 112223
Q ss_pred E---CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCe
Q 043540 275 M---DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEE 351 (437)
Q Consensus 275 ~---~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~ 351 (437)
+ ++.|++ |-.+ ..+.++|+.++.-+... +|...... ....+.-+|...+.....+.
T Consensus 132 lhpnQteLis-~dqs-------g~irvWDl~~~~c~~~l-iPe~~~~i------------~sl~v~~dgsml~a~nnkG~ 190 (311)
T KOG0315|consen 132 LHPNQTELIS-GDQS-------GNIRVWDLGENSCTHEL-IPEDDTSI------------QSLTVMPDGSMLAAANNKGN 190 (311)
T ss_pred ecCCcceEEe-ecCC-------CcEEEEEccCCcccccc-CCCCCcce------------eeEEEcCCCcEEEEecCCcc
Confidence 2 233433 2222 24889999998665432 23222220 01233346776666666677
Q ss_pred EEEEeCCCCcEE-EccCCCCcccCCCcccEEEEEe-CCEEEEEcCCCCCCCCeeEEEeeecC
Q 043540 352 VRKFDKGRKLWR-TLGRLPEQASSMNGWGLAFRAC-GDQLIVIGGPRDSGGGIVELNGWVPD 411 (437)
Q Consensus 352 v~~yd~~~~~W~-~v~~lp~~~~~~~~~~~a~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~d 411 (437)
.++++.-+.+-. ++.++.. ...+++++..+... +++.++..+.+ .++++|..|
T Consensus 191 cyvW~l~~~~~~s~l~P~~k-~~ah~~~il~C~lSPd~k~lat~ssd------ktv~iwn~~ 245 (311)
T KOG0315|consen 191 CYVWRLLNHQTASELEPVHK-FQAHNGHILRCLLSPDVKYLATCSSD------KTVKIWNTD 245 (311)
T ss_pred EEEEEccCCCccccceEhhh-eecccceEEEEEECCCCcEEEeecCC------ceEEEEecC
Confidence 888887664322 2222211 12234455555444 34555554433 245555443
No 185
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=67.89 E-value=1.2e+02 Score=30.16 Aligned_cols=42 Identities=12% Similarity=0.132 Sum_probs=29.6
Q ss_pred cCCceEEEEECCCCceecCCCCCCCccceeeEEECCEEEEEe
Q 043540 194 VHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAG 235 (437)
Q Consensus 194 ~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~G 235 (437)
...+++|++|-.-|---++..+-..-.-+++-..++.+|++-
T Consensus 403 e~~N~vYilDe~lnvvGkltGl~~gERIYAvRf~gdv~yiVT 444 (603)
T COG4880 403 EPVNAVYILDENLNVVGKLTGLAPGERIYAVRFVGDVLYIVT 444 (603)
T ss_pred CccceeEEEcCCCcEEEEEeccCCCceEEEEEEeCceEEEEE
Confidence 356889999988776666665544444467777888888873
No 186
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=67.57 E-value=1e+02 Score=28.82 Aligned_cols=14 Identities=21% Similarity=0.567 Sum_probs=10.2
Q ss_pred CCEEEEEcCCCCCC
Q 043540 386 GDQLIVIGGPRDSG 399 (437)
Q Consensus 386 ~~~l~v~GG~~~~~ 399 (437)
+.+|+++||.....
T Consensus 158 ~h~LLlVgG~~~~~ 171 (282)
T PF15492_consen 158 KHRLLLVGGCEQNQ 171 (282)
T ss_pred CCCEEEEeccCCCC
Confidence 35899999986443
No 187
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=67.27 E-value=1e+02 Score=28.31 Aligned_cols=114 Identities=18% Similarity=0.284 Sum_probs=63.6
Q ss_pred CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEE--EECCEEEEEecccCCCCccCCeEEEEECCCCc
Q 043540 228 GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGV--FMDGKFYVIGGIGEGSSAMLTDVEMYDLETGK 305 (437)
Q Consensus 228 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~--~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~ 305 (437)
+++..+++|. ..+-.||..++.=..+...-..+....++ -.+|+..+.||.+ ..+.++|+..-.
T Consensus 51 dk~~LAaa~~-------qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseD-------gt~kIWdlR~~~ 116 (311)
T KOG0315|consen 51 DKKDLAAAGN-------QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSED-------GTVKIWDLRSLS 116 (311)
T ss_pred CcchhhhccC-------CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCC-------ceEEEEeccCcc
Confidence 4455555553 45788999887433333333444555555 3489999998876 246777776622
Q ss_pred eEecCCCCCcccCCCCcccccccCCCCCEEEEE--CCEEEEEeCCCCeEEEEeCCCCcEEEccCCCCccc
Q 043540 306 WTQITDMFPARIGSDGVSVISAAGEAPPLLAVV--NNELYAADHEKEEVRKFDKGRKLWRTLGRLPEQAS 373 (437)
Q Consensus 306 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~~~~ 373 (437)
-.+.-..+.+. ..++.. ++.|+ .|-....|+++|..++..... .+|+...
T Consensus 117 ~qR~~~~~spV----------------n~vvlhpnQteLi-s~dqsg~irvWDl~~~~c~~~-liPe~~~ 168 (311)
T KOG0315|consen 117 CQRNYQHNSPV----------------NTVVLHPNQTELI-SGDQSGNIRVWDLGENSCTHE-LIPEDDT 168 (311)
T ss_pred cchhccCCCCc----------------ceEEecCCcceEE-eecCCCcEEEEEccCCccccc-cCCCCCc
Confidence 22221122111 123333 23443 344567799999999977654 3455443
No 188
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.18 E-value=1.4e+02 Score=32.67 Aligned_cols=135 Identities=19% Similarity=0.213 Sum_probs=77.7
Q ss_pred EEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEECC--EEEEEeccCCCCCCCceEEEEECCCCcEEecCCC
Q 043540 186 ELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGE--IAILAGGCDPRGKLLKSAELYNSITGTWMPISSM 263 (437)
Q Consensus 186 ~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 263 (437)
-|+|-|++...-.+|.++- |+.|..=. +..--.+.+++.+.. .+++.-|.| .++-+||....+=...-.-
T Consensus 219 pliVSG~DDRqVKlWrmne-tKaWEvDt-crgH~nnVssvlfhp~q~lIlSnsED------ksirVwDm~kRt~v~tfrr 290 (1202)
T KOG0292|consen 219 PLIVSGADDRQVKLWRMNE-TKAWEVDT-CRGHYNNVSSVLFHPHQDLILSNSED------KSIRVWDMTKRTSVQTFRR 290 (1202)
T ss_pred ceEEecCCcceeeEEEecc-ccceeehh-hhcccCCcceEEecCccceeEecCCC------ccEEEEecccccceeeeec
Confidence 4556666655556787774 78887532 111112234455443 566665543 5677788776543222112
Q ss_pred CcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEE
Q 043540 264 HKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELY 343 (437)
Q Consensus 264 ~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly 343 (437)
-..|...-++--...||..|... -+.+|-++. .. ++.++.+|.||
T Consensus 291 endRFW~laahP~lNLfAAgHDs--------Gm~VFkleR-------------Er--------------pa~~v~~n~Lf 335 (1202)
T KOG0292|consen 291 ENDRFWILAAHPELNLFAAGHDS--------GMIVFKLER-------------ER--------------PAYAVNGNGLF 335 (1202)
T ss_pred cCCeEEEEEecCCcceeeeecCC--------ceEEEEEcc-------------cC--------------ceEEEcCCEEE
Confidence 23455555555567788876543 255665442 22 56788888888
Q ss_pred EEeCCCCeEEEEeCCCCcEEEc
Q 043540 344 AADHEKEEVRKFDKGRKLWRTL 365 (437)
Q Consensus 344 ~~gg~~~~v~~yd~~~~~W~~v 365 (437)
.+- ...|+.||..+.+=..+
T Consensus 336 Yvk--d~~i~~~d~~t~~d~~v 355 (1202)
T KOG0292|consen 336 YVK--DRFIRSYDLRTQKDTAV 355 (1202)
T ss_pred EEc--cceEEeeecccccccee
Confidence 884 66799999988554444
No 189
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=65.80 E-value=52 Score=29.98 Aligned_cols=36 Identities=22% Similarity=0.210 Sum_probs=28.9
Q ss_pred ECCEEEEEeCCCCeEEEEeCCCCcEEEccCCCCccc
Q 043540 338 VNNELYAADHEKEEVRKFDKGRKLWRTLGRLPEQAS 373 (437)
Q Consensus 338 ~~~~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~~~~ 373 (437)
-.|.||+.-.++..|.++||.+++--.--.+|.++.
T Consensus 221 ~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qi 256 (310)
T KOG4499|consen 221 TEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQI 256 (310)
T ss_pred cCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCce
Confidence 478999998888999999999988665556776653
No 190
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=65.52 E-value=1.2e+02 Score=32.11 Aligned_cols=107 Identities=17% Similarity=0.232 Sum_probs=61.9
Q ss_pred EEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEE--EECCEEEEEecccCCCCccCCeEEEEECC
Q 043540 225 ASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGV--FMDGKFYVIGGIGEGSSAMLTDVEMYDLE 302 (437)
Q Consensus 225 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~--~~~g~lyv~GG~~~~~~~~~~~v~~yd~~ 302 (437)
...-+.-|++.|.. -..+-+.|..++.=.++-.- ......++ ..+|+..+.|+.. ..+..||+.
T Consensus 542 ~FHPNs~Y~aTGSs-----D~tVRlWDv~~G~~VRiF~G--H~~~V~al~~Sp~Gr~LaSg~ed-------~~I~iWDl~ 607 (707)
T KOG0263|consen 542 SFHPNSNYVATGSS-----DRTVRLWDVSTGNSVRIFTG--HKGPVTALAFSPCGRYLASGDED-------GLIKIWDLA 607 (707)
T ss_pred EECCcccccccCCC-----CceEEEEEcCCCcEEEEecC--CCCceEEEEEcCCCceEeecccC-------CcEEEEEcC
Confidence 34467888888832 25677778877765544321 11112222 2367777776655 348889988
Q ss_pred CCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCC
Q 043540 303 TGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGR 359 (437)
Q Consensus 303 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~ 359 (437)
+++-- .. ..+|++.+ .......+|.+++.||..+.|..||..+
T Consensus 608 ~~~~v--~~----l~~Ht~ti--------~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 608 NGSLV--KQ----LKGHTGTI--------YSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred CCcch--hh----hhcccCce--------eEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 75321 11 11111100 0223456899999999999999998754
No 191
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=65.36 E-value=1.6e+02 Score=29.67 Aligned_cols=118 Identities=16% Similarity=0.073 Sum_probs=65.6
Q ss_pred eCCEEEEEc-CccCCceEEEEECCCCceecCCCCCCCccceeeEE-ECCEEEEEeccCCCCCCCceEEEEECCCCcEEec
Q 043540 183 VGTELLVFG-KEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSAS-LGEIAILAGGCDPRGKLLKSAELYNSITGTWMPI 260 (437)
Q Consensus 183 ~~~~lyv~G-G~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 260 (437)
-+|+-++|- -.....++|++|..+++-+++......-. +.+-+ -+.+|+..-.. .+. ..+++||++..+=+.+
T Consensus 247 pDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~-~Ps~spdG~~ivf~Sdr--~G~--p~I~~~~~~g~~~~ri 321 (425)
T COG0823 247 PDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINT-SPSWSPDGSKIVFTSDR--GGR--PQIYLYDLEGSQVTRL 321 (425)
T ss_pred CCCCEEEEEECCCCCccEEEEcCCCCcceecccCCcccc-CccCCCCCCEEEEEeCC--CCC--cceEEECCCCCceeEe
Confidence 344444443 23355689999999887444443332222 22222 34455555332 222 5899999998876555
Q ss_pred CCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCc-eEecC
Q 043540 261 SSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGK-WTQIT 310 (437)
Q Consensus 261 ~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~-W~~~~ 310 (437)
..-... ..+....-||+.+++-+.. .+. ..+..+|+.++. |+.+.
T Consensus 322 T~~~~~-~~~p~~SpdG~~i~~~~~~--~g~--~~i~~~~~~~~~~~~~lt 367 (425)
T COG0823 322 TFSGGG-NSNPVWSPDGDKIVFESSS--GGQ--WDIDKNDLASGGKIRILT 367 (425)
T ss_pred eccCCC-CcCccCCCCCCEEEEEecc--CCc--eeeEEeccCCCCcEEEcc
Confidence 322111 1144445567766665532 111 568899998877 88775
No 192
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=64.23 E-value=1.7e+02 Score=29.81 Aligned_cols=134 Identities=8% Similarity=0.058 Sum_probs=74.0
Q ss_pred ceEEEEECCCCceecCCCCCCCccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCc-CCcCeeEE
Q 043540 197 NAIYRYNLLTNTWSTGMTMNTPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHK-ARKMCSGV 273 (437)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~-~r~~~~~~ 273 (437)
..+|.++-.+..=+.+-++. +...+++.. ++..+.+|-. ...+++||.++.+ .+..|.. .....++.
T Consensus 197 ~~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~LavG~~------~g~v~iwD~~~~k--~~~~~~~~h~~rvg~l 266 (484)
T KOG0305|consen 197 QSVYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHLAVGTS------DGTVQIWDVKEQK--KTRTLRGSHASRVGSL 266 (484)
T ss_pred ceEEEEecCCCceEEeEecC--CCceEEEEECCCCCEEEEeec------CCeEEEEehhhcc--ccccccCCcCceeEEE
Confidence 45677777777655555544 445555555 4666666543 3678999987653 3344444 23344455
Q ss_pred EECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEE-EECCEEEEEeCCCCeE
Q 043540 274 FMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLA-VVNNELYAADHEKEEV 352 (437)
Q Consensus 274 ~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~gg~~~~v 352 (437)
.-++.+...|..+ ..+..+|.....=. .....+|.-++ .++. ..++..++-||..+.+
T Consensus 267 aW~~~~lssGsr~-------~~I~~~dvR~~~~~-----~~~~~~H~qeV---------CgLkws~d~~~lASGgnDN~~ 325 (484)
T KOG0305|consen 267 AWNSSVLSSGSRD-------GKILNHDVRISQHV-----VSTLQGHRQEV---------CGLKWSPDGNQLASGGNDNVV 325 (484)
T ss_pred eccCceEEEecCC-------CcEEEEEEecchhh-----hhhhhccccee---------eeeEECCCCCeeccCCCccce
Confidence 5678888887765 23666665432110 00011110000 1122 2367777778888999
Q ss_pred EEEeCCCCc
Q 043540 353 RKFDKGRKL 361 (437)
Q Consensus 353 ~~yd~~~~~ 361 (437)
.+||.....
T Consensus 326 ~Iwd~~~~~ 334 (484)
T KOG0305|consen 326 FIWDGLSPE 334 (484)
T ss_pred EeccCCCcc
Confidence 999984433
No 193
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=64.01 E-value=1.2e+02 Score=27.89 Aligned_cols=184 Identities=13% Similarity=0.126 Sum_probs=90.8
Q ss_pred CCEEEEEe--ccCCCCCCCce-EEEEECC-CCcEEecCCCCcC------CcCee--EEEECCEEEEEecccCCCCccCCe
Q 043540 228 GEIAILAG--GCDPRGKLLKS-AELYNSI-TGTWMPISSMHKA------RKMCS--GVFMDGKFYVIGGIGEGSSAMLTD 295 (437)
Q Consensus 228 ~~~iyv~G--G~~~~~~~~~~-~~~yd~~-t~~W~~~~~~~~~------r~~~~--~~~~~g~lyv~GG~~~~~~~~~~~ 295 (437)
+++|+++- +.......-.. .+.+... -.+|+....++.. ..... ...-+|.+++.. +.. .......
T Consensus 58 ~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~~~-~~~-~~~~~~~ 135 (275)
T PF13088_consen 58 DGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIAPY-YHE-SGGSFSA 135 (275)
T ss_dssp TSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEEEE-EEE-SSCEEEE
T ss_pred CCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceeccceeeeeEecCCCEEEEE-eec-cccCcce
Confidence 78888886 22211111112 2344444 3579887654422 11112 333488988872 221 1112233
Q ss_pred EEEEECC-CCceEecCCCCCc-ccCCCCcccccccCCCCCEEEE-ECCEEEEEeCC---CCeEEEEeCC-CCcEEEcc--
Q 043540 296 VEMYDLE-TGKWTQITDMFPA-RIGSDGVSVISAAGEAPPLLAV-VNNELYAADHE---KEEVRKFDKG-RKLWRTLG-- 366 (437)
Q Consensus 296 v~~yd~~-~~~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~---~~~v~~yd~~-~~~W~~v~-- 366 (437)
...|... -.+|+.....+.. ... .+.++. -+|+|+++--. ....+.+... -.+|....
T Consensus 136 ~~~~S~D~G~tW~~~~~~~~~~~~~-------------e~~~~~~~dG~l~~~~R~~~~~~~~~~~S~D~G~TWs~~~~~ 202 (275)
T PF13088_consen 136 FVYYSDDGGKTWSSGSPIPDGQGEC-------------EPSIVELPDGRLLAVFRTEGNDDIYISRSTDGGRTWSPPQPT 202 (275)
T ss_dssp EEEEESSTTSSEEEEEECECSEEEE-------------EEEEEEETTSEEEEEEEECSSTEEEEEEESSTTSS-EEEEEE
T ss_pred EEEEeCCCCceeeccccccccCCcc-------------eeEEEECCCCcEEEEEEccCCCcEEEEEECCCCCcCCCceec
Confidence 4445444 4569888765421 111 033333 36788887422 2223333333 35799865
Q ss_pred CCCCcccCCCcccEEEEE-eCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCceecCccCCC---ceEeeeEE
Q 043540 367 RLPEQASSMNGWGLAFRA-CGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKLLARQPMC---GFVFNCTV 434 (437)
Q Consensus 367 ~lp~~~~~~~~~~~a~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~---~~~~~~~v 434 (437)
.+|.... +..++. -+++++++.... .....+.++.-..+..+|+....+..+ .+.|.+.+
T Consensus 203 ~~~~~~~-----~~~~~~~~~g~~~~~~~~~---~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~ 266 (275)
T PF13088_consen 203 NLPNPNS-----SISLVRLSDGRLLLVYNNP---DGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLT 266 (275)
T ss_dssp ECSSCCE-----EEEEEECTTSEEEEEEECS---STSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEE
T ss_pred ccCcccC-----CceEEEcCCCCEEEEEECC---CCCCceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeE
Confidence 4444332 223333 356888876622 123345555555568999977666544 48888765
No 194
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=62.38 E-value=1.4e+02 Score=28.18 Aligned_cols=90 Identities=19% Similarity=0.211 Sum_probs=51.0
Q ss_pred ceEEEEECCCCcEEecCCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCccc
Q 043540 245 KSAELYNSITGTWMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSV 324 (437)
Q Consensus 245 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 324 (437)
.++-.||..++. ....+.....--..++.|..=-+.||.+ ..+-.||+.+..=..+..--.+-.
T Consensus 35 gslrlYdv~~~~--l~~~~~~~~plL~c~F~d~~~~~~G~~d-------g~vr~~Dln~~~~~~igth~~~i~------- 98 (323)
T KOG1036|consen 35 GSLRLYDVPANS--LKLKFKHGAPLLDCAFADESTIVTGGLD-------GQVRRYDLNTGNEDQIGTHDEGIR------- 98 (323)
T ss_pred CcEEEEeccchh--hhhheecCCceeeeeccCCceEEEeccC-------ceEEEEEecCCcceeeccCCCceE-------
Confidence 456788888771 1112222222234556666666667765 358899999887666643222211
Q ss_pred ccccCCCCCEEEEE-CCEEEEEeCCCCeEEEEeCCC
Q 043540 325 ISAAGEAPPLLAVV-NNELYAADHEKEEVRKFDKGR 359 (437)
Q Consensus 325 ~~~~~~~~~~~~~~-~~~ly~~gg~~~~v~~yd~~~ 359 (437)
++... ....++.|+-...|..+|+..
T Consensus 99 ---------ci~~~~~~~~vIsgsWD~~ik~wD~R~ 125 (323)
T KOG1036|consen 99 ---------CIEYSYEVGCVISGSWDKTIKFWDPRN 125 (323)
T ss_pred ---------EEEeeccCCeEEEcccCccEEEEeccc
Confidence 12222 223345566677899999987
No 195
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=59.79 E-value=1.7e+02 Score=28.34 Aligned_cols=33 Identities=9% Similarity=0.108 Sum_probs=24.7
Q ss_pred EEEEECCEEEEEeCCCCeEEEEeCCCCc-EEEcc
Q 043540 334 LLAVVNNELYAADHEKEEVRKFDKGRKL-WRTLG 366 (437)
Q Consensus 334 ~~~~~~~~ly~~gg~~~~v~~yd~~~~~-W~~v~ 366 (437)
++.+..+.+|+.|+....++.||-+++- ++...
T Consensus 365 tl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~ 398 (460)
T KOG0285|consen 365 TLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQ 398 (460)
T ss_pred eeeeccCceEEEcCCceEEEEEecCcCccccccc
Confidence 4555667888999999999999988753 55553
No 196
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=59.78 E-value=7.2 Score=38.34 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=42.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHhhccCccchhhHHHHhHHHHHhhcCcchH
Q 043540 81 NLSDSNSLIPELGRDITINCLLRCSRSDYGAIASLNRAFRSLIQSGELY 129 (437)
Q Consensus 81 ~~~~~~~~~~~LP~dl~~~~L~rlP~~~~~~~~~V~k~w~sli~s~~~y 129 (437)
.+.........||.+++..+++.|...++.+.+.+|+-|+.++.++.=|
T Consensus 64 ra~~~~~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~ 112 (483)
T KOG4341|consen 64 RAADNNSISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCW 112 (483)
T ss_pred hhhhcccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccc
Confidence 3456677778899999999999999999999999999999998776544
No 197
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=59.12 E-value=49 Score=31.76 Aligned_cols=108 Identities=14% Similarity=0.172 Sum_probs=65.4
Q ss_pred CeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCC
Q 043540 269 MCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHE 348 (437)
Q Consensus 269 ~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~ 348 (437)
..-.+-+++| |++.-.+ -.++.++++.|...... +...+.+ -+++.++|++.+-|..
T Consensus 322 aVNvVdfd~k-yIVsASg------DRTikvW~~st~efvRt--l~gHkRG--------------IAClQYr~rlvVSGSS 378 (499)
T KOG0281|consen 322 AVNVVDFDDK-YIVSASG------DRTIKVWSTSTCEFVRT--LNGHKRG--------------IACLQYRDRLVVSGSS 378 (499)
T ss_pred heeeeccccc-eEEEecC------CceEEEEeccceeeehh--hhccccc--------------ceehhccCeEEEecCC
Confidence 3344556788 4443221 13577788777655433 3333334 4567789999999988
Q ss_pred CCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCC
Q 043540 349 KEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDE 412 (437)
Q Consensus 349 ~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~ 412 (437)
.+.|..||.+.+.--.+-.=.+.. .-++-.+++=+|-||++ ..+.+|.+..
T Consensus 379 DntIRlwdi~~G~cLRvLeGHEeL-------vRciRFd~krIVSGaYD------GkikvWdl~a 429 (499)
T KOG0281|consen 379 DNTIRLWDIECGACLRVLEGHEEL-------VRCIRFDNKRIVSGAYD------GKIKVWDLQA 429 (499)
T ss_pred CceEEEEeccccHHHHHHhchHHh-------hhheeecCceeeecccc------ceEEEEeccc
Confidence 999999999887655542211111 11234577778888876 2366777643
No 198
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=58.06 E-value=1.6e+02 Score=27.83 Aligned_cols=83 Identities=19% Similarity=0.244 Sum_probs=46.0
Q ss_pred CCEEEEEe-cccCCCC----ccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEEC-------CEEE
Q 043540 276 DGKFYVIG-GIGEGSS----AMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVN-------NELY 343 (437)
Q Consensus 276 ~g~lyv~G-G~~~~~~----~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ly 343 (437)
.|.|+|+- |...... ..-..+..||+.+++=...-.+|...... ......+++-. +.+|
T Consensus 11 ~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~---------~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 11 CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPP---------DSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-T---------CGGEEEEEEECTTTTS-SEEEE
T ss_pred CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHccc---------ccccceEEEEccCCCCcceEEE
Confidence 57888883 3321111 22357999999999854443333222110 00001233322 4789
Q ss_pred EEeCCCCeEEEEeCCCCc-EEEccC
Q 043540 344 AADHEKEEVRKFDKGRKL-WRTLGR 367 (437)
Q Consensus 344 ~~gg~~~~v~~yd~~~~~-W~~v~~ 367 (437)
+.+.....+.+||..+++ |+....
T Consensus 82 ItD~~~~glIV~dl~~~~s~Rv~~~ 106 (287)
T PF03022_consen 82 ITDSGGPGLIVYDLATGKSWRVLHN 106 (287)
T ss_dssp EEETTTCEEEEEETTTTEEEEEETC
T ss_pred EeCCCcCcEEEEEccCCcEEEEecC
Confidence 998777899999999965 665543
No 199
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=56.50 E-value=2.5e+02 Score=29.25 Aligned_cols=133 Identities=14% Similarity=0.191 Sum_probs=68.7
Q ss_pred eEEEEECCCCceecCCCCCCCccceeeEEECC-EEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEEC
Q 043540 198 AIYRYNLLTNTWSTGMTMNTPRCLFGSASLGE-IAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFMD 276 (437)
Q Consensus 198 ~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~ 276 (437)
.|-+||+.+.+--..-.-...|. .+..++. ...+-|+.+ ..+.+.|+.+.+ +.+-.+...........+.
T Consensus 352 ~v~VW~~~~~~cl~sl~gH~~~V--~sl~~~~~~~~~Sgs~D------~~IkvWdl~~~~-~c~~tl~~h~~~v~~l~~~ 422 (537)
T KOG0274|consen 352 TVKVWDPRTGKCLKSLSGHTGRV--YSLIVDSENRLLSGSLD------TTIKVWDLRTKR-KCIHTLQGHTSLVSSLLLR 422 (537)
T ss_pred eEEEEEhhhceeeeeecCCcceE--EEEEecCcceEEeeeec------cceEeecCCchh-hhhhhhcCCcccccccccc
Confidence 56777777544322111111111 1223455 555555554 567788887764 2222233322222344556
Q ss_pred CEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEe
Q 043540 277 GKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFD 356 (437)
Q Consensus 277 g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd 356 (437)
+++++-+..+ ..+..+|.+++.=.+.-.-+ .... -.++..+...++..+....+..||
T Consensus 423 ~~~Lvs~~aD-------~~Ik~WD~~~~~~~~~~~~~-~~~~--------------v~~l~~~~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 423 DNFLVSSSAD-------GTIKLWDAEEGECLRTLEGR-HVGG--------------VSALALGKEEILCSSDDGSVKLWD 480 (537)
T ss_pred cceeEecccc-------ccEEEeecccCceeeeeccC-Cccc--------------EEEeecCcceEEEEecCCeeEEEe
Confidence 7888877665 25778888776554432222 1111 122223335666666777888888
Q ss_pred CCCCc
Q 043540 357 KGRKL 361 (437)
Q Consensus 357 ~~~~~ 361 (437)
..+.+
T Consensus 481 l~~~~ 485 (537)
T KOG0274|consen 481 LRSGT 485 (537)
T ss_pred cccCc
Confidence 87754
No 200
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=55.37 E-value=66 Score=26.50 Aligned_cols=63 Identities=16% Similarity=0.276 Sum_probs=37.4
Q ss_pred CEEEEEeccCCCCCCCceEEEEECCCCc---EEecCCCCcCCcCeeEEE---ECCEEEEEecccCCCCccCCeEEEEECC
Q 043540 229 EIAILAGGCDPRGKLLKSAELYNSITGT---WMPISSMHKARKMCSGVF---MDGKFYVIGGIGEGSSAMLTDVEMYDLE 302 (437)
Q Consensus 229 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~---W~~~~~~~~~r~~~~~~~---~~g~lyv~GG~~~~~~~~~~~v~~yd~~ 302 (437)
..+.++|- .+.+..||.+.|+ +++++ .......... ....+.++||.. ++.-||-+
T Consensus 64 ~D~LliGt-------~t~llaYDV~~N~d~Fyke~~---DGvn~i~~g~~~~~~~~l~ivGGnc--------si~Gfd~~ 125 (136)
T PF14781_consen 64 RDCLLIGT-------QTSLLAYDVENNSDLFYKEVP---DGVNAIVIGKLGDIPSPLVIVGGNC--------SIQGFDYE 125 (136)
T ss_pred cCEEEEec-------cceEEEEEcccCchhhhhhCc---cceeEEEEEecCCCCCcEEEECceE--------EEEEeCCC
Confidence 46667753 3788999999987 44443 2221111111 246788888876 46677765
Q ss_pred CCc--eEec
Q 043540 303 TGK--WTQI 309 (437)
Q Consensus 303 ~~~--W~~~ 309 (437)
-+. |+..
T Consensus 126 G~e~fWtVt 134 (136)
T PF14781_consen 126 GNEIFWTVT 134 (136)
T ss_pred CcEEEEEec
Confidence 443 6543
No 201
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=54.17 E-value=1.2e+02 Score=29.99 Aligned_cols=115 Identities=16% Similarity=0.222 Sum_probs=63.1
Q ss_pred EEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEE-EEECCEEEEEeCCCCe
Q 043540 273 VFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLL-AVVNNELYAADHEKEE 351 (437)
Q Consensus 273 ~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ly~~gg~~~~ 351 (437)
.-.||.+...||.+. ..-++|+.++.=..+- .+|...+ ..+ ..-||...+.|+..+.
T Consensus 311 f~~DGSL~~tGGlD~-------~~RvWDlRtgr~im~L------~gH~k~I---------~~V~fsPNGy~lATgs~Dnt 368 (459)
T KOG0272|consen 311 FQPDGSLAATGGLDS-------LGRVWDLRTGRCIMFL------AGHIKEI---------LSVAFSPNGYHLATGSSDNT 368 (459)
T ss_pred ecCCCceeeccCccc-------hhheeecccCcEEEEe------cccccce---------eeEeECCCceEEeecCCCCc
Confidence 345899999999871 2334666665433321 1110000 111 1237888888888888
Q ss_pred EEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCceecCcc
Q 043540 352 VRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKLLARQ 423 (437)
Q Consensus 352 v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~ 423 (437)
+.++|+....= +-.||....-+. ...+....|+.++.++++ ..+++| .+..|..+..|
T Consensus 369 ~kVWDLR~r~~--ly~ipAH~nlVS--~Vk~~p~~g~fL~TasyD------~t~kiW----s~~~~~~~ksL 426 (459)
T KOG0272|consen 369 CKVWDLRMRSE--LYTIPAHSNLVS--QVKYSPQEGYFLVTASYD------NTVKIW----STRTWSPLKSL 426 (459)
T ss_pred EEEeeeccccc--ceecccccchhh--heEecccCCeEEEEcccC------cceeee----cCCCcccchhh
Confidence 99999876543 334444332211 122222357777877765 346677 35667766544
No 202
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=53.45 E-value=1.7e+02 Score=29.83 Aligned_cols=104 Identities=18% Similarity=0.258 Sum_probs=60.1
Q ss_pred CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCCc
Q 043540 228 GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGK 305 (437)
Q Consensus 228 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~ 305 (437)
++.-.++||.+ ..+.+|....+.=.+...+...|...+.+.+ |+++++.|-.. ..+..||.+++.
T Consensus 454 ~~~~vaVGG~D------gkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~-------rkvv~yd~~s~~ 520 (603)
T KOG0318|consen 454 DGSEVAVGGQD------GKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDAS-------RKVVLYDVASRE 520 (603)
T ss_pred CCCEEEEeccc------ceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccC-------CcEEEEEcccCc
Confidence 45566677754 3378888877654444444455665565555 66766665443 357788887654
Q ss_pred eEecCCC--CCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCC
Q 043540 306 WTQITDM--FPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGR 359 (437)
Q Consensus 306 W~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~ 359 (437)
= ....+ ...|.. ..+-.-++++++.|.-...|.+|+.++
T Consensus 521 ~-~~~~w~FHtakI~--------------~~aWsP~n~~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 521 V-KTNRWAFHTAKIN--------------CVAWSPNNKLVATGSLDTNVIIYSVKK 561 (603)
T ss_pred e-ecceeeeeeeeEE--------------EEEeCCCceEEEeccccceEEEEEccC
Confidence 3 11111 111111 011112788888887777899998765
No 203
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=52.61 E-value=1.9e+02 Score=26.57 Aligned_cols=198 Identities=13% Similarity=0.075 Sum_probs=108.2
Q ss_pred EEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECC----CCceecCCCCCCCccceeeEE
Q 043540 151 WEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLL----TNTWSTGMTMNTPRCLFGSAS 226 (437)
Q Consensus 151 ~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~----t~~W~~~~~~~~~r~~~~~~~ 226 (437)
.....+..+.|.+=|. |. +.++|++. ......++.|... .+.|...-.+|.+-.+.+-++
T Consensus 12 ~~~~~~~~GsWmrDpl-~~--------------~~r~~~~~-~~~~~~l~E~~~~~~~~~~~~~~~~~lp~~~~gTg~VV 75 (249)
T KOG3545|consen 12 VKTAGPRFGAWMRDPL-PA--------------DDRIYVMN-YFDGLMLTEYTNLEDFKRGRKAEKYRLPYSWDGTGHVV 75 (249)
T ss_pred EEeeccccceeecCCC-cc--------------cCceEEec-cccCceEEEeccHHHhhccCcceEEeCCCCccccceEE
Confidence 3455666678875332 11 45667773 3334556666553 345555566888888889999
Q ss_pred ECCEEEEEeccCCCCCCCceEEEEECCCCc---EEecCCCCcCC------cCe---eEEEECCEEEEEecccCCCCccCC
Q 043540 227 LGEIAILAGGCDPRGKLLKSAELYNSITGT---WMPISSMHKAR------KMC---SGVFMDGKFYVIGGIGEGSSAMLT 294 (437)
Q Consensus 227 ~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~---W~~~~~~~~~r------~~~---~~~~~~g~lyv~GG~~~~~~~~~~ 294 (437)
+++.+|.-.+ ....+..||.++.. |..++.+...- ..+ -.++-..-|+++--.. +....-
T Consensus 76 ynGs~yynk~------~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~--~~~g~i 147 (249)
T KOG3545|consen 76 YNGSLYYNKA------GTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATP--ENAGTI 147 (249)
T ss_pred EcceEEeecc------CCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEeccc--ccCCcE
Confidence 9999998753 23678889998854 66665442110 111 2233334466654332 111122
Q ss_pred eEEEEECCC----CceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCC---CCeE-EEEeCCCCcEEEcc
Q 043540 295 DVEMYDLET----GKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHE---KEEV-RKFDKGRKLWRTLG 366 (437)
Q Consensus 295 ~v~~yd~~~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~---~~~v-~~yd~~~~~W~~v~ 366 (437)
.+-..|+.+ .+|..- ++.... ..+..+=|.||++... ...| +.||..+++=..+
T Consensus 148 v~skLdp~tl~~e~tW~T~--~~k~~~---------------~~aF~iCGvLY~v~S~~~~~~~i~yaydt~~~~~~~~- 209 (249)
T KOG3545|consen 148 VLSKLDPETLEVERTWNTT--LPKRSA---------------GNAFMICGVLYVVHSYNCTHTQISYAYDTTTGTQERI- 209 (249)
T ss_pred EeeccCHHHhheeeeeccc--cCCCCc---------------CceEEEeeeeEEEeccccCCceEEEEEEcCCCceecc-
Confidence 235566643 345221 111221 2356667899999642 2234 7999998877544
Q ss_pred CCCCcccCCCcccEEEEE---eCCEEEEEc
Q 043540 367 RLPEQASSMNGWGLAFRA---CGDQLIVIG 393 (437)
Q Consensus 367 ~lp~~~~~~~~~~~a~~~---~~~~l~v~G 393 (437)
.+|..... .+++.+- .+.+||+.-
T Consensus 210 ~ipf~N~y---~~~~~idYNP~D~~LY~wd 236 (249)
T KOG3545|consen 210 DLPFPNPY---SYATMIDYNPRDRRLYAWD 236 (249)
T ss_pred cccccchh---hhhhccCCCcccceeeEec
Confidence 34443321 1233322 356888874
No 204
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=52.42 E-value=2e+02 Score=26.78 Aligned_cols=90 Identities=14% Similarity=0.185 Sum_probs=51.3
Q ss_pred ceEEEEECCCCc--EEecCCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCC--ceEecCCCCCcccCCC
Q 043540 245 KSAELYNSITGT--WMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETG--KWTQITDMFPARIGSD 320 (437)
Q Consensus 245 ~~~~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~ 320 (437)
..+..-|+.++. |+.+ -..|.-+++.++++. .|+|-+. ..++..+.+++ .|....--... .
T Consensus 33 ~~~~avd~~sG~~~We~i---lg~RiE~sa~vvgdf-VV~GCy~-------g~lYfl~~~tGs~~w~f~~~~~vk-~--- 97 (354)
T KOG4649|consen 33 GIVIAVDPQSGNLIWEAI---LGVRIECSAIVVGDF-VVLGCYS-------GGLYFLCVKTGSQIWNFVILETVK-V--- 97 (354)
T ss_pred ceEEEecCCCCcEEeehh---hCceeeeeeEEECCE-EEEEEcc-------CcEEEEEecchhheeeeeehhhhc-c---
Confidence 455667888876 8765 345777788888776 5666655 12555666665 46544211111 1
Q ss_pred CcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCc
Q 043540 321 GVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKL 361 (437)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~ 361 (437)
...+..++.+...|......++.|+.+..
T Consensus 98 ------------~a~~d~~~glIycgshd~~~yalD~~~~~ 126 (354)
T KOG4649|consen 98 ------------RAQCDFDGGLIYCGSHDGNFYALDPKTYG 126 (354)
T ss_pred ------------ceEEcCCCceEEEecCCCcEEEecccccc
Confidence 12333455555555555567777777654
No 205
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=52.10 E-value=2.7e+02 Score=28.19 Aligned_cols=107 Identities=16% Similarity=0.172 Sum_probs=59.7
Q ss_pred CCEEEEEeccCCCCCCCceEEEEECCCC-c-EEecCCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCc
Q 043540 228 GEIAILAGGCDPRGKLLKSAELYNSITG-T-WMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGK 305 (437)
Q Consensus 228 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~-~-W~~~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~ 305 (437)
+++ |++.|.+ -..+.++|.+.+ . =+.+..+.... ...+..-++++++.|+.+ .++..+|+.+.+
T Consensus 214 d~~-~l~s~s~-----D~tiriwd~~~~~~~~~~l~gH~~~v-~~~~f~p~g~~i~Sgs~D-------~tvriWd~~~~~ 279 (456)
T KOG0266|consen 214 DGS-YLLSGSD-----DKTLRIWDLKDDGRNLKTLKGHSTYV-TSVAFSPDGNLLVSGSDD-------GTVRIWDVRTGE 279 (456)
T ss_pred CCc-EEEEecC-----CceEEEeeccCCCeEEEEecCCCCce-EEEEecCCCCEEEEecCC-------CcEEEEeccCCe
Confidence 455 5555532 256788888444 2 23333333333 222233367899988876 358889998843
Q ss_pred eEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCcE
Q 043540 306 WTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKLW 362 (437)
Q Consensus 306 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~W 362 (437)
=...-........ .....-++.+++.+...+.|.+||..+..-
T Consensus 280 ~~~~l~~hs~~is--------------~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 280 CVRKLKGHSDGIS--------------GLAFSPDGNLLVSASYDGTIRVWDLETGSK 322 (456)
T ss_pred EEEeeeccCCceE--------------EEEECCCCCEEEEcCCCccEEEEECCCCce
Confidence 3222111111100 112223677777776678899999998774
No 206
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=51.91 E-value=28 Score=19.82 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=17.2
Q ss_pred CEEEE-ECCEEEEEeCCCCeEEEE
Q 043540 333 PLLAV-VNNELYAADHEKEEVRKF 355 (437)
Q Consensus 333 ~~~~~-~~~~ly~~gg~~~~v~~y 355 (437)
.++++ -+|.||+.+.....|.+|
T Consensus 5 ~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEETTSEEEEEECCCTEEEEE
T ss_pred cEEEEeCCCCEEEEECCCCEEEEC
Confidence 34555 589999999777778776
No 207
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=49.08 E-value=2.3e+02 Score=27.98 Aligned_cols=195 Identities=11% Similarity=-0.050 Sum_probs=77.4
Q ss_pred hhhcCccccEEEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEc---C----------------
Q 043540 132 RREMGIIEHWVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFG---K---------------- 192 (437)
Q Consensus 132 ~~~~~~~~~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~G---G---------------- 192 (437)
++........+|+......+...|..+.+=..+-..|..-.... ..++..++..++.- .
T Consensus 85 g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~g--t~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~ 162 (386)
T PF14583_consen 85 GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYG--TWVANSDCTKLVGIEISREDWKPLTKWKGFREFY 162 (386)
T ss_dssp T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEE--EEEE-TTSSEEEEEEEEGGG-----SHHHHHHHH
T ss_pred ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCccccccc--ceeeCCCccEEEEEEEeehhccCccccHHHHHHH
Confidence 33333334555444445677888888876555544444322110 01111122222210 0
Q ss_pred -ccCCceEEEEECCCCceecCCCCCCCccceeeEE-ECCEEEEEeccCCCCCCCceEEEEECCCCcEEec-CCCCcCCcC
Q 043540 193 -EVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSAS-LGEIAILAGGCDPRGKLLKSAELYNSITGTWMPI-SSMHKARKM 269 (437)
Q Consensus 193 -~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~-~~~~~~r~~ 269 (437)
....+.++..|..|++.+.+-.-.. --+|.-.+ .+..++++--..........+|..|......+.+ ..++.....
T Consensus 163 ~a~p~~~i~~idl~tG~~~~v~~~~~-wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~g 241 (386)
T PF14583_consen 163 EARPHCRIFTIDLKTGERKVVFEDTD-WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVG 241 (386)
T ss_dssp HC---EEEEEEETTT--EEEEEEESS--EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEE
T ss_pred hhCCCceEEEEECCCCceeEEEecCc-cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccc
Confidence 0123566777777777665422110 01111111 1334444421112222235889999876554444 333322223
Q ss_pred eeEEEECCE-EEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCC
Q 043540 270 CSGVFMDGK-FYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHE 348 (437)
Q Consensus 270 ~~~~~~~g~-lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~ 348 (437)
|---..||+ |+..+... ...-.-+..||+++..=+.+..|| ... |.....+|+|++-+|.
T Consensus 242 HEfw~~DG~~i~y~~~~~---~~~~~~i~~~d~~t~~~~~~~~~p--~~~--------------H~~ss~Dg~L~vGDG~ 302 (386)
T PF14583_consen 242 HEFWVPDGSTIWYDSYTP---GGQDFWIAGYDPDTGERRRLMEMP--WCS--------------HFMSSPDGKLFVGDGG 302 (386)
T ss_dssp EEEE-TTSS-EEEEEEET---TT--EEEEEE-TTT--EEEEEEE---SEE--------------EEEE-TTSSEEEEEE-
T ss_pred cccccCCCCEEEEEeecC---CCCceEEEeeCCCCCCceEEEeCC--cee--------------eeEEcCCCCEEEecCC
Confidence 333344554 44433332 222334788999987544444443 233 5667778888887653
No 208
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=48.97 E-value=1.8e+02 Score=25.40 Aligned_cols=91 Identities=15% Similarity=0.116 Sum_probs=46.9
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCC
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSM 263 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 263 (437)
+.++.++-|. ....+..||.....=.. ++........-.-+++..++||.... ...++.||.. +.+.+...
T Consensus 71 g~~favi~g~-~~~~v~lyd~~~~~i~~---~~~~~~n~i~wsP~G~~l~~~g~~n~---~G~l~~wd~~--~~~~i~~~ 141 (194)
T PF08662_consen 71 GNEFAVIYGS-MPAKVTLYDVKGKKIFS---FGTQPRNTISWSPDGRFLVLAGFGNL---NGDLEFWDVR--KKKKISTF 141 (194)
T ss_pred CCEEEEEEcc-CCcccEEEcCcccEeEe---ecCCCceEEEECCCCCEEEEEEccCC---CcEEEEEECC--CCEEeecc
Confidence 4555555443 23478889986333222 22222222222336778888886532 2568999988 44444443
Q ss_pred CcCCcCeeEE--EECCEEEEEecc
Q 043540 264 HKARKMCSGV--FMDGKFYVIGGI 285 (437)
Q Consensus 264 ~~~r~~~~~~--~~~g~lyv~GG~ 285 (437)
.... .+.+ .-+|+.++....
T Consensus 142 ~~~~--~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 142 EHSD--ATDVEWSPDGRYLATATT 163 (194)
T ss_pred ccCc--EEEEEEcCCCCEEEEEEe
Confidence 3222 2222 226776666543
No 209
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=48.56 E-value=2.7e+02 Score=27.12 Aligned_cols=142 Identities=10% Similarity=0.129 Sum_probs=73.2
Q ss_pred CEEEEEcCccCCceEEEEECCCCceecCCCCCCCcc--ceeeEEECCEEEEEeccCCCCCCCceEEEEECCCC--cEEec
Q 043540 185 TELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRC--LFGSASLGEIAILAGGCDPRGKLLKSAELYNSITG--TWMPI 260 (437)
Q Consensus 185 ~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~--~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~ 260 (437)
..+.+.||+. +..++++..++.|--. ++.-.- -..+.++++.+.+.|+.+ ..+.++...++ +|...
T Consensus 76 ~~l~aTGGgD--D~AflW~~~~ge~~~e--ltgHKDSVt~~~FshdgtlLATGdms------G~v~v~~~stg~~~~~~~ 145 (399)
T KOG0296|consen 76 NNLVATGGGD--DLAFLWDISTGEFAGE--LTGHKDSVTCCSFSHDGTLLATGDMS------GKVLVFKVSTGGEQWKLD 145 (399)
T ss_pred CceEEecCCC--ceEEEEEccCCcceeE--ecCCCCceEEEEEccCceEEEecCCC------ccEEEEEcccCceEEEee
Confidence 4455566643 3567788888875321 111111 123334577777777754 34566666554 47654
Q ss_pred CCCCcC--CcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE
Q 043540 261 SSMHKA--RKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV 338 (437)
Q Consensus 261 ~~~~~~--r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (437)
.++..- ...|. .+.|++.|-.+ .++++|.+-+..-.++ |+. ... .+..+-..=
T Consensus 146 ~e~~dieWl~WHp----~a~illAG~~D-------GsvWmw~ip~~~~~kv--~~G-h~~-----------~ct~G~f~p 200 (399)
T KOG0296|consen 146 QEVEDIEWLKWHP----RAHILLAGSTD-------GSVWMWQIPSQALCKV--MSG-HNS-----------PCTCGEFIP 200 (399)
T ss_pred cccCceEEEEecc----cccEEEeecCC-------CcEEEEECCCcceeeE--ecC-CCC-----------CcccccccC
Confidence 332210 00111 23455555443 2477777766522222 111 111 000122333
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCc
Q 043540 339 NNELYAADHEKEEVRKFDKGRKL 361 (437)
Q Consensus 339 ~~~ly~~gg~~~~v~~yd~~~~~ 361 (437)
+|+..+.|+....|.++|+++.+
T Consensus 201 dGKr~~tgy~dgti~~Wn~ktg~ 223 (399)
T KOG0296|consen 201 DGKRILTGYDDGTIIVWNPKTGQ 223 (399)
T ss_pred CCceEEEEecCceEEEEecCCCc
Confidence 58888888888889999999874
No 210
>PF13013 F-box-like_2: F-box-like domain
Probab=47.67 E-value=28 Score=27.62 Aligned_cols=29 Identities=14% Similarity=0.122 Sum_probs=25.8
Q ss_pred CCCCCHHHHHHHhhccCccchhhHHHHhH
Q 043540 89 IPELGRDITINCLLRCSRSDYGAIASLNR 117 (437)
Q Consensus 89 ~~~LP~dl~~~~L~rlP~~~~~~~~~V~k 117 (437)
+.+||+||+..|+-......+..+...|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 78899999999999999998888777777
No 211
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=47.42 E-value=2e+02 Score=28.23 Aligned_cols=90 Identities=23% Similarity=0.256 Sum_probs=49.2
Q ss_pred ceEEEEECCCCc-EEecCCCCcCCcCeeEEEE--CC-EEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCC
Q 043540 245 KSAELYNSITGT-WMPISSMHKARKMCSGVFM--DG-KFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSD 320 (437)
Q Consensus 245 ~~~~~yd~~t~~-W~~~~~~~~~r~~~~~~~~--~g-~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~ 320 (437)
+.+.+.|..+++ -.+++.. ...|..... || .+|+.+. + ..+-.+|+.+++ .+..++.+...
T Consensus 16 ~~v~viD~~t~~~~~~i~~~---~~~h~~~~~s~Dgr~~yv~~r-d-------g~vsviD~~~~~--~v~~i~~G~~~-- 80 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIPTG---GAPHAGLKFSPDGRYLYVANR-D-------GTVSVIDLATGK--VVATIKVGGNP-- 80 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-S---TTEEEEEE-TT-SSEEEEEET-T-------SEEEEEETTSSS--EEEEEE-SSEE--
T ss_pred CEEEEEECCCCeEEEEEcCC---CCceeEEEecCCCCEEEEEcC-C-------CeEEEEECCccc--EEEEEecCCCc--
Confidence 678889988875 3333322 222554443 34 5888753 2 258899999887 33333322222
Q ss_pred CcccccccCCCCCEEEE-ECCE-EEEEeCCCCeEEEEeCCCCc
Q 043540 321 GVSVISAAGEAPPLLAV-VNNE-LYAADHEKEEVRKFDKGRKL 361 (437)
Q Consensus 321 ~~~~~~~~~~~~~~~~~-~~~~-ly~~gg~~~~v~~yd~~~~~ 361 (437)
..+++ -+|+ +|+.....+.+.++|.++.+
T Consensus 81 ------------~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle 111 (369)
T PF02239_consen 81 ------------RGIAVSPDGKYVYVANYEPGTVSVIDAETLE 111 (369)
T ss_dssp ------------EEEEE--TTTEEEEEEEETTEEEEEETTT--
T ss_pred ------------ceEEEcCCCCEEEEEecCCCceeEecccccc
Confidence 23333 4665 44444567899999998855
No 212
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=46.70 E-value=38 Score=25.71 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=28.1
Q ss_pred CEEEEEeC-----------------CCCeEEEEeCCCCcEEEcc-CCCCcccCCCcccEEEEEeCCEEEEE
Q 043540 340 NELYAADH-----------------EKEEVRKFDKGRKLWRTLG-RLPEQASSMNGWGLAFRACGDQLIVI 392 (437)
Q Consensus 340 ~~ly~~gg-----------------~~~~v~~yd~~~~~W~~v~-~lp~~~~~~~~~~~a~~~~~~~l~v~ 392 (437)
|.||+... ..+.+.+|||.+++.+.+. .|..+. |.++..-++.|+|.
T Consensus 10 g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpN------GVals~d~~~vlv~ 74 (89)
T PF03088_consen 10 GTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPN------GVALSPDESFVLVA 74 (89)
T ss_dssp --EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEE------EEEE-TTSSEEEEE
T ss_pred CEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccC------eEEEcCCCCEEEEE
Confidence 78888764 2457999999999997764 444332 45544444456554
No 213
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=46.43 E-value=3e+02 Score=27.05 Aligned_cols=182 Identities=11% Similarity=0.041 Sum_probs=87.2
Q ss_pred cCceEEEeccCCCCe-eeCCCCCCccccccCCceeE-Ee-CCEEEEEcCccCCceEEEEECCCCceecCCCCCCCcccee
Q 043540 147 KLKEWEAFDPIHHRW-MHLPPMNASDCFMCADKESL-AV-GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFG 223 (437)
Q Consensus 147 ~~~~~~~yDp~~~~W-~~l~~~p~~~~~~~~~~~~~-~~-~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~ 223 (437)
..+++...|..+++= ..++..... |. ..+ +- +..+|+.+. ...+-++|+.+++ .+...+......+
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~~~~~---h~---~~~~s~Dgr~~yv~~r---dg~vsviD~~~~~--~v~~i~~G~~~~~ 82 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPTGGAP---HA---GLKFSPDGRYLYVANR---DGTVSVIDLATGK--VVATIKVGGNPRG 82 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE-STTE---EE---EEE-TT-SSEEEEEET---TSEEEEEETTSSS--EEEEEE-SSEEEE
T ss_pred CCCEEEEEECCCCeEEEEEcCCCCc---ee---EEEecCCCCEEEEEcC---CCeEEEEECCccc--EEEEEecCCCcce
Confidence 457788899888753 334332211 11 111 22 467899863 3478999998877 3444444444444
Q ss_pred eEE-ECCEEEEEeccCCCCCCCceEEEEECCCCcE-EecC--CCCc--CCcCeeEEE--ECCEEEEEecccCCCCccCCe
Q 043540 224 SAS-LGEIAILAGGCDPRGKLLKSAELYNSITGTW-MPIS--SMHK--ARKMCSGVF--MDGKFYVIGGIGEGSSAMLTD 295 (437)
Q Consensus 224 ~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W-~~~~--~~~~--~r~~~~~~~--~~g~lyv~GG~~~~~~~~~~~ 295 (437)
.++ -+++..+++.+. .+.+.++|.+|.+= +.++ .++. .....++++ ..+..||+.-.. ...
T Consensus 83 i~~s~DG~~~~v~n~~-----~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd------~~~ 151 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYE-----PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD------TGE 151 (369)
T ss_dssp EEE--TTTEEEEEEEE-----TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT------TTE
T ss_pred EEEcCCCCEEEEEecC-----CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc------CCe
Confidence 443 344433333332 36788999887652 2222 2222 111222222 245556654332 345
Q ss_pred EEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCE-EEEECCEEEEEe-CCCCeEEEEeCCCCcEEE
Q 043540 296 VEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPL-LAVVNNELYAAD-HEKEEVRKFDKGRKLWRT 364 (437)
Q Consensus 296 v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ly~~g-g~~~~v~~yd~~~~~W~~ 364 (437)
++..|....+=-.+..+...+.- +- ...-+++.|+++ ...+.+-+.|.++++-..
T Consensus 152 I~vVdy~d~~~~~~~~i~~g~~~--------------~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~ 208 (369)
T PF02239_consen 152 IWVVDYSDPKNLKVTTIKVGRFP--------------HDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVA 208 (369)
T ss_dssp EEEEETTTSSCEEEEEEE--TTE--------------EEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred EEEEEeccccccceeeecccccc--------------cccccCcccceeeecccccceeEEEeeccceEEE
Confidence 77777655321111111111211 22 222355655554 346789999988876543
No 214
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=45.97 E-value=52 Score=20.30 Aligned_cols=26 Identities=31% Similarity=0.403 Sum_probs=16.6
Q ss_pred eeEEEECCEEEEEecccCCCCccCCeEEEEECCC
Q 043540 270 CSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLET 303 (437)
Q Consensus 270 ~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~ 303 (437)
.+.++.++++|+.+... .++++|+++
T Consensus 15 ~~~~v~~g~vyv~~~dg--------~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTGDG--------NLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-TTS--------EEEEEETT-
T ss_pred cCCEEECCEEEEEcCCC--------EEEEEeCCC
Confidence 44567789999886533 588888764
No 215
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=43.35 E-value=3.4e+02 Score=26.98 Aligned_cols=94 Identities=14% Similarity=0.161 Sum_probs=47.8
Q ss_pred EeCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeE-EECCEEEEEeccCCCCCCCceEEEEECCCCcEEec
Q 043540 182 AVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSA-SLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPI 260 (437)
Q Consensus 182 ~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 260 (437)
-.+|.|.+.||......| +|..|++=...-.- .-+--+++. .-+++....||.| +.+-+.|....+ .+
T Consensus 312 ~~DGSL~~tGGlD~~~Rv--WDlRtgr~im~L~g-H~k~I~~V~fsPNGy~lATgs~D------nt~kVWDLR~r~--~l 380 (459)
T KOG0272|consen 312 QPDGSLAATGGLDSLGRV--WDLRTGRCIMFLAG-HIKEILSVAFSPNGYHLATGSSD------NTCKVWDLRMRS--EL 380 (459)
T ss_pred cCCCceeeccCccchhhe--eecccCcEEEEecc-cccceeeEeECCCceEEeecCCC------CcEEEeeecccc--cc
Confidence 347788888886554444 47766653221110 111112222 2367777777754 455666665432 24
Q ss_pred CCCCcCCcCeeEEEE---CCEEEEEeccc
Q 043540 261 SSMHKARKMCSGVFM---DGKFYVIGGIG 286 (437)
Q Consensus 261 ~~~~~~r~~~~~~~~---~g~lyv~GG~~ 286 (437)
-.||....-.+-|-+ .|++.+.++++
T Consensus 381 y~ipAH~nlVS~Vk~~p~~g~fL~TasyD 409 (459)
T KOG0272|consen 381 YTIPAHSNLVSQVKYSPQEGYFLVTASYD 409 (459)
T ss_pred eecccccchhhheEecccCCeEEEEcccC
Confidence 445544444443333 46677776665
No 216
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=42.77 E-value=3.1e+02 Score=26.20 Aligned_cols=138 Identities=17% Similarity=0.107 Sum_probs=73.8
Q ss_pred CCceEEEEECCCCceecCCCCCCCccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCc-EEecCC----CCcCC
Q 043540 195 HGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGT-WMPISS----MHKAR 267 (437)
Q Consensus 195 ~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~----~~~~r 267 (437)
..+.++.||+.++.=+.... |... .+...+ ++.|++.. ..+..++++++. |+.+.. .+..|
T Consensus 45 ~~~~i~r~~~~~g~~~~~~~-p~~~--~~~~~~d~~g~Lv~~~---------~g~~~~~~~~~~~~t~~~~~~~~~~~~r 112 (307)
T COG3386 45 LGGRIHRLDPETGKKRVFPS-PGGF--SSGALIDAGGRLIACE---------HGVRLLDPDTGGKITLLAEPEDGLPLNR 112 (307)
T ss_pred CCCeEEEecCCcCceEEEEC-CCCc--ccceeecCCCeEEEEc---------cccEEEeccCCceeEEeccccCCCCcCC
Confidence 34678888888665443321 1111 222233 34454442 334566665443 355432 34455
Q ss_pred cCeeEEEECCEEEEEecc----cCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECC-EE
Q 043540 268 KMCSGVFMDGKFYVIGGI----GEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNN-EL 342 (437)
Q Consensus 268 ~~~~~~~~~g~lyv~GG~----~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l 342 (437)
..=..+.-+|.||+---. ..........++.||+. +...++-.-.....+ ..+..-++ .+
T Consensus 113 ~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l~~~~~~~~N--------------Gla~SpDg~tl 177 (307)
T COG3386 113 PNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVRLLDDDLTIPN--------------GLAFSPDGKTL 177 (307)
T ss_pred CCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEEEeecCcEEecC--------------ceEECCCCCEE
Confidence 555666668888875332 11223444579999994 555544322111222 12233355 89
Q ss_pred EEEeCCCCeEEEEeCCC
Q 043540 343 YAADHEKEEVRKFDKGR 359 (437)
Q Consensus 343 y~~gg~~~~v~~yd~~~ 359 (437)
|+.+...+.|++|+...
T Consensus 178 y~aDT~~~~i~r~~~d~ 194 (307)
T COG3386 178 YVADTPANRIHRYDLDP 194 (307)
T ss_pred EEEeCCCCeEEEEecCc
Confidence 99987788999998763
No 217
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=42.00 E-value=3.1e+02 Score=26.00 Aligned_cols=61 Identities=20% Similarity=0.281 Sum_probs=33.2
Q ss_pred CCEEEEEcCccCCceEEE-EECCCCceecCCCCCCCccceeeEEE------CCEEEEEeccCCCCCCCceEEEEECCCCc
Q 043540 184 GTELLVFGKEVHGNAIYR-YNLLTNTWSTGMTMNTPRCLFGSASL------GEIAILAGGCDPRGKLLKSAELYNSITGT 256 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~-yd~~t~~W~~~~~~~~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 256 (437)
+|..++.||....--+|. |.-..|-|... +|..|+. ++..++..|.| ..+..+|.++++
T Consensus 58 ~gs~~aSgG~Dr~I~LWnv~gdceN~~~lk--------gHsgAVM~l~~~~d~s~i~S~gtD------k~v~~wD~~tG~ 123 (338)
T KOG0265|consen 58 DGSCFASGGSDRAIVLWNVYGDCENFWVLK--------GHSGAVMELHGMRDGSHILSCGTD------KTVRGWDAETGK 123 (338)
T ss_pred CCCeEeecCCcceEEEEeccccccceeeec--------cccceeEeeeeccCCCEEEEecCC------ceEEEEecccce
Confidence 345555565432222232 44556777643 4555544 33444444433 678899999986
Q ss_pred EE
Q 043540 257 WM 258 (437)
Q Consensus 257 W~ 258 (437)
-.
T Consensus 124 ~~ 125 (338)
T KOG0265|consen 124 RI 125 (338)
T ss_pred ee
Confidence 43
No 218
>PHA02579 7 baseplate wedge subunit; Provisional
Probab=41.13 E-value=5e+02 Score=28.13 Aligned_cols=56 Identities=21% Similarity=0.551 Sum_probs=33.8
Q ss_pred EECCEEEEE--eC-----------------CCCeEEEEeCCCCcEEEc-cCCCCcccCCC-cccEEEEEeCCEEEEEc
Q 043540 337 VVNNELYAA--DH-----------------EKEEVRKFDKGRKLWRTL-GRLPEQASSMN-GWGLAFRACGDQLIVIG 393 (437)
Q Consensus 337 ~~~~~ly~~--gg-----------------~~~~v~~yd~~~~~W~~v-~~lp~~~~~~~-~~~~a~~~~~~~l~v~G 393 (437)
+++|++|++ |- ....|+.+|....+|++| +...+.+.... ++ ..+..-+..+|+--
T Consensus 370 ~~~gk~yaLVtGev~~~~~dpt~~~nv~~s~~~GVY~~~~dg~tw~RVfGNteeER~~i~h~~-tnmST~g~e~~iS~ 446 (1030)
T PHA02579 370 VIDGKLYALVTGEVKTLNADPTRPENVVPSDDKGVYRLDEDGKTWTRVFGNTEEERRRIEHGY-TNMSTDGEEVFISS 446 (1030)
T ss_pred ccCCEEEEEEEEEEeecccCCCCccCcCCccccceEEEccCCCeEEEeeCCCHHHhhhccccc-ccccCCCceeEEEe
Confidence 468999976 31 134699999999999998 44444433211 11 22333456777753
No 219
>PRK02888 nitrous-oxide reductase; Validated
Probab=40.67 E-value=4.7e+02 Score=27.73 Aligned_cols=45 Identities=16% Similarity=0.108 Sum_probs=29.4
Q ss_pred CCeEEEEeCCC---CcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCCC
Q 043540 349 KEEVRKFDKGR---KLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPR 396 (437)
Q Consensus 349 ~~~v~~yd~~~---~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~ 396 (437)
.+.|-+.|..+ ..+..+..+|.+.+. +|.++..-+..+|+.|+..
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGKsP---HGV~vSPDGkylyVanklS 342 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPKNP---HGVNTSPDGKYFIANGKLS 342 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCCCc---cceEECCCCCEEEEeCCCC
Confidence 45688888876 235555556665543 5777666667788888754
No 220
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=40.47 E-value=3.3e+02 Score=25.95 Aligned_cols=24 Identities=13% Similarity=0.266 Sum_probs=19.6
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCcE
Q 043540 339 NNELYAADHEKEEVRKFDKGRKLW 362 (437)
Q Consensus 339 ~~~ly~~gg~~~~v~~yd~~~~~W 362 (437)
.++||+.|...+.|..||-..+..
T Consensus 272 t~~lYvTaSkDG~IklwDGVS~rC 295 (430)
T KOG0640|consen 272 TGSLYVTASKDGAIKLWDGVSNRC 295 (430)
T ss_pred CccEEEEeccCCcEEeeccccHHH
Confidence 689999987778888988877654
No 221
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=39.85 E-value=4.5e+02 Score=27.26 Aligned_cols=83 Identities=17% Similarity=0.125 Sum_probs=50.6
Q ss_pred CeEEEEeCCCCcEEEcc--CCCCcccCCCcccEEEEEeCCEEEEEcCCC---CCCCCeeEEEeeecCCCCCCceecCccC
Q 043540 350 EEVRKFDKGRKLWRTLG--RLPEQASSMNGWGLAFRACGDQLIVIGGPR---DSGGGIVELNGWVPDEGPPHWKLLARQP 424 (437)
Q Consensus 350 ~~v~~yd~~~~~W~~v~--~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~---~~~~~~~~~~~~~~d~~~~~W~~l~~~p 424 (437)
..|++|+....+...++ ..|... .+ ..++-.++|.|-|+--.. .........+++++|..-+.=-.+..+-
T Consensus 248 T~I~kf~~~~~~~~y~~sg~V~G~l--ln--qFsmdE~~G~LRvaTT~~~~~~~~~~~s~N~lyVLD~~L~~vG~l~~la 323 (521)
T PF09826_consen 248 TTIYKFALDGGKIEYVGSGSVPGYL--LN--QFSMDEYDGYLRVATTSGNWWWDSEDTSSNNLYVLDEDLKIVGSLEGLA 323 (521)
T ss_pred eEEEEEEccCCcEEEEEEEEECcEE--cc--cccEeccCCEEEEEEecCcccccCCCCceEEEEEECCCCcEeEEccccC
Confidence 46888888887777554 333222 22 245667888887764332 2234556677888885555555555565
Q ss_pred CCceEeeeEEee
Q 043540 425 MCGFVFNCTVMG 436 (437)
Q Consensus 425 ~~~~~~~~~v~~ 436 (437)
.+=..|++-.||
T Consensus 324 ~gE~IysvRF~G 335 (521)
T PF09826_consen 324 PGERIYSVRFMG 335 (521)
T ss_pred CCceEEEEEEeC
Confidence 666667777665
No 222
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=39.46 E-value=2.7e+02 Score=24.51 Aligned_cols=81 Identities=16% Similarity=0.231 Sum_probs=47.8
Q ss_pred ccCCCCCCCceEEEEECCCCcEEecCCCCcC-CcCe-eEEEE-CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCC
Q 043540 236 GCDPRGKLLKSAELYNSITGTWMPISSMHKA-RKMC-SGVFM-DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDM 312 (437)
Q Consensus 236 G~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~-r~~~-~~~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~ 312 (437)
|-+........++++|..++.|..+.--+.. .... -+.-+ |..|.|+=|..-+....-..++.|++.++.-+.+.+.
T Consensus 79 g~~a~eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~ 158 (200)
T PF15525_consen 79 GPEAEEEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEW 158 (200)
T ss_pred CCccccccceeEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeec
Confidence 3444444578899999999888655222211 1111 23333 5556555454312233445699999999998888776
Q ss_pred CCcc
Q 043540 313 FPAR 316 (437)
Q Consensus 313 ~~~~ 316 (437)
....
T Consensus 159 ~dkk 162 (200)
T PF15525_consen 159 KDKK 162 (200)
T ss_pred cccc
Confidence 5543
No 223
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=39.46 E-value=3.3e+02 Score=25.57 Aligned_cols=145 Identities=17% Similarity=0.185 Sum_probs=79.3
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEE--C--CEEEEEeccCCCCCCCceEEEEECCCCcEEe
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL--G--EIAILAGGCDPRGKLLKSAELYNSITGTWMP 259 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 259 (437)
++.-.|-|. ..+.+..||...+.=-++..--. |....++-+ + +-+++-+|.| ..+-+.|+.+-+=.
T Consensus 116 dn~qivSGS--rDkTiklwnt~g~ck~t~~~~~~-~~WVscvrfsP~~~~p~Ivs~s~D------ktvKvWnl~~~~l~- 185 (315)
T KOG0279|consen 116 DNRQIVSGS--RDKTIKLWNTLGVCKYTIHEDSH-REWVSCVRFSPNESNPIIVSASWD------KTVKVWNLRNCQLR- 185 (315)
T ss_pred CCceeecCC--CcceeeeeeecccEEEEEecCCC-cCcEEEEEEcCCCCCcEEEEccCC------ceEEEEccCCcchh-
Confidence 444445442 23456777777665444432211 433333333 2 4566666654 56777787664321
Q ss_pred cCCCCcCCcCe--eEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEE
Q 043540 260 ISSMHKARKMC--SGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV 337 (437)
Q Consensus 260 ~~~~~~~r~~~--~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (437)
...+..-... ..+..||.+...||.+ ..+..+|+...+= +..+.....- .+++.
T Consensus 186 -~~~~gh~~~v~t~~vSpDGslcasGgkd-------g~~~LwdL~~~k~--lysl~a~~~v--------------~sl~f 241 (315)
T KOG0279|consen 186 -TTFIGHSGYVNTVTVSPDGSLCASGGKD-------GEAMLWDLNEGKN--LYSLEAFDIV--------------NSLCF 241 (315)
T ss_pred -hccccccccEEEEEECCCCCEEecCCCC-------ceEEEEEccCCce--eEeccCCCeE--------------eeEEe
Confidence 1222221222 2344599999999987 2366667665432 2222211111 35666
Q ss_pred ECCEEEEEeCCCCeEEEEeCCCCcE
Q 043540 338 VNNELYAADHEKEEVRKFDKGRKLW 362 (437)
Q Consensus 338 ~~~~ly~~gg~~~~v~~yd~~~~~W 362 (437)
.-++.+++-.....|.++|.+++.-
T Consensus 242 spnrywL~~at~~sIkIwdl~~~~~ 266 (315)
T KOG0279|consen 242 SPNRYWLCAATATSIKIWDLESKAV 266 (315)
T ss_pred cCCceeEeeccCCceEEEeccchhh
Confidence 6778777766667799999888653
No 224
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=39.04 E-value=4.5e+02 Score=27.00 Aligned_cols=137 Identities=20% Similarity=0.282 Sum_probs=73.6
Q ss_pred CEEEEEcCccCCceEEEEECCCCceecCC--CCC-CCccceeeEEECC--EEEEEeccCCCCCCCceEEEEECCCCcEEe
Q 043540 185 TELLVFGKEVHGNAIYRYNLLTNTWSTGM--TMN-TPRCLFGSASLGE--IAILAGGCDPRGKLLKSAELYNSITGTWMP 259 (437)
Q Consensus 185 ~~lyv~GG~~~~~~v~~yd~~t~~W~~~~--~~~-~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 259 (437)
+.++..| ..+.+.+.+...+....-. .+. +|+ ++++..+ .+.++ +...+.++...+.--
T Consensus 375 ~~~~t~g---~Dd~l~~~~~~~~~~t~~~~~~lg~QP~---~lav~~d~~~avv~--------~~~~iv~l~~~~~~~-- 438 (603)
T KOG0318|consen 375 GELFTIG---WDDTLRVISLKDNGYTKSEVVKLGSQPK---GLAVLSDGGTAVVA--------CISDIVLLQDQTKVS-- 438 (603)
T ss_pred CcEEEEe---cCCeEEEEecccCcccccceeecCCCce---eEEEcCCCCEEEEE--------ecCcEEEEecCCcce--
Confidence 6777776 3345666655544443321 111 222 4444433 34333 234555555433321
Q ss_pred cCCCCcCCcCee--EEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEE
Q 043540 260 ISSMHKARKMCS--GVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV 337 (437)
Q Consensus 260 ~~~~~~~r~~~~--~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (437)
..+ .++..+ ++..++...++||.+ ..+..|-+..+.-.+..-+...+.. ...+.
T Consensus 439 --~~~-~~y~~s~vAv~~~~~~vaVGG~D-------gkvhvysl~g~~l~ee~~~~~h~a~--------------iT~va 494 (603)
T KOG0318|consen 439 --SIP-IGYESSAVAVSPDGSEVAVGGQD-------GKVHVYSLSGDELKEEAKLLEHRAA--------------ITDVA 494 (603)
T ss_pred --eec-cccccceEEEcCCCCEEEEeccc-------ceEEEEEecCCcccceeeeecccCC--------------ceEEE
Confidence 222 233333 334488899999987 2488888877654443333333322 22333
Q ss_pred E--CCEEEEEeCCCCeEEEEeCCCCc
Q 043540 338 V--NNELYAADHEKEEVRKFDKGRKL 361 (437)
Q Consensus 338 ~--~~~ly~~gg~~~~v~~yd~~~~~ 361 (437)
+ ++..++.|-....+..||.++++
T Consensus 495 ySpd~~yla~~Da~rkvv~yd~~s~~ 520 (603)
T KOG0318|consen 495 YSPDGAYLAAGDASRKVVLYDVASRE 520 (603)
T ss_pred ECCCCcEEEEeccCCcEEEEEcccCc
Confidence 3 66777777778889999988764
No 225
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=38.04 E-value=2.6e+02 Score=24.44 Aligned_cols=29 Identities=3% Similarity=0.140 Sum_probs=18.6
Q ss_pred CCEEEEEeCC---CCeEEEEeCCCCcEEEccCCC
Q 043540 339 NNELYAADHE---KEEVRKFDKGRKLWRTLGRLP 369 (437)
Q Consensus 339 ~~~ly~~gg~---~~~v~~yd~~~~~W~~v~~lp 369 (437)
+|++.+++|. ...+..||..+ .+.+....
T Consensus 111 ~G~~l~~~g~~n~~G~l~~wd~~~--~~~i~~~~ 142 (194)
T PF08662_consen 111 DGRFLVLAGFGNLNGDLEFWDVRK--KKKISTFE 142 (194)
T ss_pred CCCEEEEEEccCCCcEEEEEECCC--CEEeeccc
Confidence 6777776653 35699999984 55554433
No 226
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=37.89 E-value=1.8e+02 Score=29.27 Aligned_cols=62 Identities=23% Similarity=0.466 Sum_probs=35.3
Q ss_pred CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE--C-CEEEEEecccCCCCccCCeEEEEECCCC
Q 043540 228 GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM--D-GKFYVIGGIGEGSSAMLTDVEMYDLETG 304 (437)
Q Consensus 228 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~-g~lyv~GG~~~~~~~~~~~v~~yd~~~~ 304 (437)
.+.-++.+|++ ..+-.+|.+|++-..- +... .....+-. + .++|++||.+ ..+..||+.++
T Consensus 269 ~g~~fLS~sfD------~~lKlwDtETG~~~~~--f~~~-~~~~cvkf~pd~~n~fl~G~sd-------~ki~~wDiRs~ 332 (503)
T KOG0282|consen 269 CGTSFLSASFD------RFLKLWDTETGQVLSR--FHLD-KVPTCVKFHPDNQNIFLVGGSD-------KKIRQWDIRSG 332 (503)
T ss_pred cCCeeeeeecc------eeeeeeccccceEEEE--EecC-CCceeeecCCCCCcEEEEecCC-------CcEEEEeccch
Confidence 34556666665 4566789999875432 2111 11122222 3 4899999986 23666776665
Q ss_pred c
Q 043540 305 K 305 (437)
Q Consensus 305 ~ 305 (437)
+
T Consensus 333 k 333 (503)
T KOG0282|consen 333 K 333 (503)
T ss_pred H
Confidence 4
No 227
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=37.65 E-value=3.4e+02 Score=25.15 Aligned_cols=141 Identities=19% Similarity=0.165 Sum_probs=71.8
Q ss_pred ceEEEEECCCCcEEecCCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCccc
Q 043540 245 KSAELYNSITGTWMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSV 324 (437)
Q Consensus 245 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 324 (437)
.++-.+|..|++=..--.++.+... .-+..+|.|..+.-- .+|..+|+.+-.--+--.||.....
T Consensus 165 ~tVRLWD~rTgt~v~sL~~~s~VtS-lEvs~dG~ilTia~g--------ssV~Fwdaksf~~lKs~k~P~nV~S------ 229 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSLEFNSPVTS-LEVSQDGRILTIAYG--------SSVKFWDAKSFGLLKSYKMPCNVES------ 229 (334)
T ss_pred CceEEEEeccCcEEEEEecCCCCcc-eeeccCCCEEEEecC--------ceeEEeccccccceeeccCcccccc------
Confidence 5566777777764332222222211 122336666655321 1245555544222222244544333
Q ss_pred ccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEE-EeCCEEEEEcCCCCCCCCee
Q 043540 325 ISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFR-ACGDQLIVIGGPRDSGGGIV 403 (437)
Q Consensus 325 ~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~-~~~~~l~v~GG~~~~~~~~~ 403 (437)
+...=+..+|+.||....+++||..++.=... . ...+.+.-+++. .-++.+|..|..+ -
T Consensus 230 ---------ASL~P~k~~fVaGged~~~~kfDy~TgeEi~~--~---nkgh~gpVhcVrFSPdGE~yAsGSED------G 289 (334)
T KOG0278|consen 230 ---------ASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS--Y---NKGHFGPVHCVRFSPDGELYASGSED------G 289 (334)
T ss_pred ---------ccccCCCceEEecCcceEEEEEeccCCceeee--c---ccCCCCceEEEEECCCCceeeccCCC------c
Confidence 11222558899999888899999988753322 1 111111123332 2378999998765 2
Q ss_pred EEEeeecCCCCC--Cceec
Q 043540 404 ELNGWVPDEGPP--HWKLL 420 (437)
Q Consensus 404 ~~~~~~~d~~~~--~W~~l 420 (437)
++.+|.-.+... .|.-+
T Consensus 290 TirlWQt~~~~~~~~~~~~ 308 (334)
T KOG0278|consen 290 TIRLWQTTPGKTYGLWKCV 308 (334)
T ss_pred eEEEEEecCCCchhhcccc
Confidence 466777655332 45543
No 228
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=36.72 E-value=3.9e+02 Score=25.59 Aligned_cols=219 Identities=16% Similarity=0.205 Sum_probs=94.7
Q ss_pred eeEEeCCEEEEEcCcc--------CCceEEEEEC-CCCceecCCC-C--C--CC---ccceeeEEECCEEEEEec-cCCC
Q 043540 179 ESLAVGTELLVFGKEV--------HGNAIYRYNL-LTNTWSTGMT-M--N--TP---RCLFGSASLGEIAILAGG-CDPR 240 (437)
Q Consensus 179 ~~~~~~~~lyv~GG~~--------~~~~v~~yd~-~t~~W~~~~~-~--~--~~---r~~~~~~~~~~~iyv~GG-~~~~ 240 (437)
+++.+|+.|++|.... ....+..|.. ...+|+.... + . .. ...++.++-+++||++-| ++..
T Consensus 3 SLV~vgGvv~AvAEa~~~~~~~~~~~~ias~~~~~~g~tw~~~~~~~~~~~~~~~v~v~rPTtvvkgn~IymLvG~y~~~ 82 (310)
T PF13859_consen 3 SLVEVGGVVFAVAEAQCKKSNDSGFTDIASEYSTDNGETWKAEVAVLNDDGSKKRVDVSRPTTVVKGNKIYMLVGSYSRS 82 (310)
T ss_dssp EEEEETTEEEEEEEEESS-S-SSS-EEEEEEEESSSSSS-EEEEEE----SS-TT-EEEEEEEEEETTEEEEEEEEESS-
T ss_pred CEEEECCEEEEEEEEEEccCCCCCceeEEEeEeeccccccccceeeecccccccccccceeeeeecceeEEEEEEEEecc
Confidence 3578899999986411 1112233433 3457875421 1 1 11 123466677999998866 4321
Q ss_pred -CCCCceEEEEEC--CCCcEEecCCCCcCC---------cCeeEEEE-CCEEEE-EecccCCCCccCCeEEEEECC-CCc
Q 043540 241 -GKLLKSAELYNS--ITGTWMPISSMHKAR---------KMCSGVFM-DGKFYV-IGGIGEGSSAMLTDVEMYDLE-TGK 305 (437)
Q Consensus 241 -~~~~~~~~~yd~--~t~~W~~~~~~~~~r---------~~~~~~~~-~g~lyv-~GG~~~~~~~~~~~v~~yd~~-~~~ 305 (437)
+.....+..+-. ...+|.....++..- ..-+++.+ ||.|.+ +-+.. .+....-++..|... ..+
T Consensus 83 ~~~~~~~llLvks~~~g~~W~~~~~l~~~~~~~~~~figgGGSGV~m~dGTLVFPv~a~~-~~~~~~~SlIiYS~d~g~~ 161 (310)
T PF13859_consen 83 AGADDWGLLLVKSTDGGIKWGDTKSLPSTSFQSWKQFIGGGGSGVVMEDGTLVFPVQATK-KNGDGTVSLIIYSTDDGKT 161 (310)
T ss_dssp -SSTTEEEEEEEEESSSSEE---EE-GGGS-EEEEEEEE-SEE-EE-TTS-EEEEEEEEE-TT---EEEEEEEESSTTSS
T ss_pred ccccccceeeeeccCCcceeeecccCCchhccccceeecCCCCceEEcCCCEEEEEeeec-cCccceEEEEEEECCCccc
Confidence 112233444432 223598776554321 12233445 454332 22222 112213456778776 678
Q ss_pred eEecCCCCCcccCCCCcccccccCCCCCEEEEE-CCEEEEEeCC-CC--eEEEEeCCCCcEEE-ccCCCCccc---CCCc
Q 043540 306 WTQITDMFPARIGSDGVSVISAAGEAPPLLAVV-NNELYAADHE-KE--EVRKFDKGRKLWRT-LGRLPEQAS---SMNG 377 (437)
Q Consensus 306 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ly~~gg~-~~--~v~~yd~~~~~W~~-v~~lp~~~~---~~~~ 377 (437)
|+.-..++..-+. .+.++.. +|+|.++... .. .||.=.-.-.+|++ ++.++.--. ...+
T Consensus 162 W~lskg~s~~gC~-------------~psv~EWe~gkLlM~~~c~~g~rrVYeS~DmG~tWtea~gtlsrVw~ns~~~~~ 228 (310)
T PF13859_consen 162 WKLSKGMSPAGCS-------------DPSVVEWEDGKLLMMTACDDGRRRVYESGDMGTTWTEALGTLSRVWGNSQGVQG 228 (310)
T ss_dssp -EE-S----TT-E-------------EEEEEEE-TTEEEEEEE-TTS---EEEESSTTSS-EE-TTTTTT---SST----
T ss_pred eEeccccCCCCcc-------------eEEEEeccCCeeEEEEecccceEEEEEEcccceehhhccCccceeeccccccCc
Confidence 9987766554333 1678888 8899988532 22 34443344568998 566653211 1111
Q ss_pred ccEEE---EEeCC-EEEEEcCC--C-CCCCCeeEEEeeecC
Q 043540 378 WGLAF---RACGD-QLIVIGGP--R-DSGGGIVELNGWVPD 411 (437)
Q Consensus 378 ~~~a~---~~~~~-~l~v~GG~--~-~~~~~~~~~~~~~~d 411 (437)
.+..+ +.+++ ++.++-=+ . ..+.....+++|.=|
T Consensus 229 ~~v~~~~ta~iegr~VmL~T~~~y~~~~~~~~~~L~LWlTD 269 (310)
T PF13859_consen 229 GFVTAGITATIEGRKVMLYTQPVYSSGNEKEKGRLHLWLTD 269 (310)
T ss_dssp -EEEE----EETTEEEEEEEEE---SS-T-T-B-EEEEEES
T ss_pred cceeeeeeeccCCcEEEEEEEeeccccCccccceeEEEeCC
Confidence 22222 34554 56555322 2 223456677888755
No 229
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=36.62 E-value=3.8e+02 Score=25.45 Aligned_cols=61 Identities=28% Similarity=0.387 Sum_probs=35.3
Q ss_pred CCEEEEEeccCCCCCCCceEE-EEECCCCcEEecCCCCcCCcCeeEEEE------CCEEEEEecccCCCCccCCeEEEEE
Q 043540 228 GEIAILAGGCDPRGKLLKSAE-LYNSITGTWMPISSMHKARKMCSGVFM------DGKFYVIGGIGEGSSAMLTDVEMYD 300 (437)
Q Consensus 228 ~~~iyv~GG~~~~~~~~~~~~-~yd~~t~~W~~~~~~~~~r~~~~~~~~------~g~lyv~GG~~~~~~~~~~~v~~yd 300 (437)
++..++.||+|.. --+| +|.-..|.|..- .|+++++ |+...+..|.+ ..+..+|
T Consensus 58 ~gs~~aSgG~Dr~----I~LWnv~gdceN~~~lk--------gHsgAVM~l~~~~d~s~i~S~gtD-------k~v~~wD 118 (338)
T KOG0265|consen 58 DGSCFASGGSDRA----IVLWNVYGDCENFWVLK--------GHSGAVMELHGMRDGSHILSCGTD-------KTVRGWD 118 (338)
T ss_pred CCCeEeecCCcce----EEEEeccccccceeeec--------cccceeEeeeeccCCCEEEEecCC-------ceEEEEe
Confidence 4666777776522 1122 356667777632 6666655 33333433443 3688999
Q ss_pred CCCCceE
Q 043540 301 LETGKWT 307 (437)
Q Consensus 301 ~~~~~W~ 307 (437)
.++++=.
T Consensus 119 ~~tG~~~ 125 (338)
T KOG0265|consen 119 AETGKRI 125 (338)
T ss_pred cccceee
Confidence 9988644
No 230
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=36.59 E-value=3.9e+02 Score=25.53 Aligned_cols=223 Identities=12% Similarity=0.040 Sum_probs=111.2
Q ss_pred EEEeccCCCCeeeCCCCCCccccccCCceeEEeC-CEEEEEcCc--cCCceEEEEECCCCceecCCCCCCC-ccceeeEE
Q 043540 151 WEAFDPIHHRWMHLPPMNASDCFMCADKESLAVG-TELLVFGKE--VHGNAIYRYNLLTNTWSTGMTMNTP-RCLFGSAS 226 (437)
Q Consensus 151 ~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~-~~lyv~GG~--~~~~~v~~yd~~t~~W~~~~~~~~~-r~~~~~~~ 226 (437)
...||+.+.+=...-.-+..|+|.. |.+++-+ ..||..-.+ .....+-+||.. ++.+++...+.. .--|-+..
T Consensus 30 ~~v~D~~~g~~~~~~~a~~gRHFyG--Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l 106 (305)
T PF07433_consen 30 ALVFDCRTGQLLQRLWAPPGRHFYG--HGVFSPDGRLLYTTENDYETGRGVIGVYDAA-RGYRRIGEFPSHGIGPHELLL 106 (305)
T ss_pred EEEEEcCCCceeeEEcCCCCCEEec--CEEEcCCCCEEEEeccccCCCcEEEEEEECc-CCcEEEeEecCCCcChhhEEE
Confidence 4678998886543323355565544 4555554 456655432 223468899987 677776655432 22344444
Q ss_pred E-CC-EEEEE-eccCCC---C-------CCCceEEEEECCCCcEEecCCCC----cCCcCeeEEEECCEEEEEecccCCC
Q 043540 227 L-GE-IAILA-GGCDPR---G-------KLLKSAELYNSITGTWMPISSMH----KARKMCSGVFMDGKFYVIGGIGEGS 289 (437)
Q Consensus 227 ~-~~-~iyv~-GG~~~~---~-------~~~~~~~~yd~~t~~W~~~~~~~----~~r~~~~~~~~~g~lyv~GG~~~~~ 289 (437)
. ++ .|.|+ ||..-. + ..-.++...|..+++=...-.+| .--..|-++.-+|.+.+-.-+....
T Consensus 107 ~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~ 186 (305)
T PF07433_consen 107 MPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDP 186 (305)
T ss_pred cCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCC
Confidence 4 33 44444 564211 1 11235566778887643332333 2223455555566665543333121
Q ss_pred CccCCeEEEEECCCCceEecCCCCCcc-cCCCCcccccccCCCCCEEEEE-CCEEEEE-eCCCCeEEEEeCCCCcEEEcc
Q 043540 290 SAMLTDVEMYDLETGKWTQITDMFPAR-IGSDGVSVISAAGEAPPLLAVV-NNELYAA-DHEKEEVRKFDKGRKLWRTLG 366 (437)
Q Consensus 290 ~~~~~~v~~yd~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~ly~~-gg~~~~v~~yd~~~~~W~~v~ 366 (437)
.....-+..++.... -+.+ .+|... .. ...+..++++. ++.++++ .-..+.+.+||..+..|....
T Consensus 187 ~~~~PLva~~~~g~~-~~~~-~~p~~~~~~---------l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~ 255 (305)
T PF07433_consen 187 GDAPPLVALHRRGGA-LRLL-PAPEEQWRR---------LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV 255 (305)
T ss_pred CccCCeEEEEcCCCc-ceec-cCChHHHHh---------hCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc
Confidence 222222333333321 1111 111110 00 00111344443 3444544 446788999999999999988
Q ss_pred CCCCcccCCCcccEEEEEeCCEEEEEcCC
Q 043540 367 RLPEQASSMNGWGLAFRACGDQLIVIGGP 395 (437)
Q Consensus 367 ~lp~~~~~~~~~~~a~~~~~~~l~v~GG~ 395 (437)
.++.. ++++..++...+..|.
T Consensus 256 ~l~D~--------cGva~~~~~f~~ssG~ 276 (305)
T PF07433_consen 256 PLPDA--------CGVAPTDDGFLVSSGQ 276 (305)
T ss_pred ccCce--------eeeeecCCceEEeCCC
Confidence 88774 2344455555555554
No 231
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=36.38 E-value=4.3e+02 Score=25.99 Aligned_cols=149 Identities=17% Similarity=0.141 Sum_probs=83.6
Q ss_pred eCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeE--EECCEEEEEeccCCCCCCCceEEEEECCCCcEEec
Q 043540 183 VGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSA--SLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPI 260 (437)
Q Consensus 183 ~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 260 (437)
.++++|++.+. .+.+.++|..+++-.. ..+..+.-+..+ ..++++||.-... ..+.+.+.|..+++=...
T Consensus 84 ~~~~vyv~~~~--~~~v~vid~~~~~~~~--~~~vG~~P~~~~~~~~~~~vYV~n~~~----~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 84 AGNKVYVTTGD--SNTVSVIDTATNTVLG--SIPVGLGPVGLAVDPDGKYVYVANAGN----GNNTVSVIDAATNKVTAT 155 (381)
T ss_pred CCCeEEEecCC--CCeEEEEcCcccceee--EeeeccCCceEEECCCCCEEEEEeccc----CCceEEEEeCCCCeEEEE
Confidence 57789998754 5678889965554332 222222323333 3467999985422 247889999998874332
Q ss_pred CCCCcCCcCeeEEE--ECCEEEEEecccCCCCccCCeEEEEECCCCceEecCC----CCCcccCCCCcccccccCCCCCE
Q 043540 261 SSMHKARKMCSGVF--MDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITD----MFPARIGSDGVSVISAAGEAPPL 334 (437)
Q Consensus 261 ~~~~~~r~~~~~~~--~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 334 (437)
.+........++ .++++|+.- ...+.+..+|+++..=.. .. .+... .+..
T Consensus 156 --~~vG~~P~~~a~~p~g~~vyv~~-------~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~--------------~P~~ 211 (381)
T COG3391 156 --IPVGNTPTGVAVDPDGNKVYVTN-------SDDNTVSVIDTSGNSVVR-GSVGSLVGVGT--------------GPAG 211 (381)
T ss_pred --EecCCCcceEEECCCCCeEEEEe-------cCCCeEEEEeCCCcceec-cccccccccCC--------------CCce
Confidence 121111122222 245689885 223468888887765443 21 11111 1122
Q ss_pred EEE--ECCEEEEEeCCC--CeEEEEeCCCCcEE
Q 043540 335 LAV--VNNELYAADHEK--EEVRKFDKGRKLWR 363 (437)
Q Consensus 335 ~~~--~~~~ly~~gg~~--~~v~~yd~~~~~W~ 363 (437)
+++ -+.++|+..... +.+.++|..++.=.
T Consensus 212 i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~ 244 (381)
T COG3391 212 IAVDPDGNRVYVANDGSGSNNVLKIDTATGNVT 244 (381)
T ss_pred EEECCCCCEEEEEeccCCCceEEEEeCCCceEE
Confidence 333 245688886554 58899998886533
No 232
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=35.76 E-value=4.4e+02 Score=25.92 Aligned_cols=138 Identities=16% Similarity=0.140 Sum_probs=77.5
Q ss_pred ECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEE--ECCEEEEEecccCCCCccCCeEEEEECCCC
Q 043540 227 LGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVF--MDGKFYVIGGIGEGSSAMLTDVEMYDLETG 304 (437)
Q Consensus 227 ~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~--~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~ 304 (437)
.+.++|+..+. .+.+.++|..+++-.. ..+..+.-+..++ .++++||..... ..+.+...|..++
T Consensus 84 ~~~~vyv~~~~------~~~v~vid~~~~~~~~--~~~vG~~P~~~~~~~~~~~vYV~n~~~-----~~~~vsvid~~t~ 150 (381)
T COG3391 84 AGNKVYVTTGD------SNTVSVIDTATNTVLG--SIPVGLGPVGLAVDPDGKYVYVANAGN-----GNNTVSVIDAATN 150 (381)
T ss_pred CCCeEEEecCC------CCeEEEEcCcccceee--EeeeccCCceEEECCCCCEEEEEeccc-----CCceEEEEeCCCC
Confidence 46789999653 4788899976665322 2222223333332 256899985421 2456889999988
Q ss_pred ceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCcEEEccC----CCCcccCCCcccE
Q 043540 305 KWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKLWRTLGR----LPEQASSMNGWGL 380 (437)
Q Consensus 305 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~W~~v~~----lp~~~~~~~~~~~ 380 (437)
+=....+.-....+ ..+-..++++|+.....+.+..+|.++..=.+ .. .+..... ++.
T Consensus 151 ~~~~~~~vG~~P~~--------------~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P---~~i 212 (381)
T COG3391 151 KVTATIPVGNTPTG--------------VAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGP---AGI 212 (381)
T ss_pred eEEEEEecCCCcce--------------EEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCC---ceE
Confidence 75544211100011 11112356699998778889999988765433 21 2221111 244
Q ss_pred EEEEeCCEEEEEcCC
Q 043540 381 AFRACGDQLIVIGGP 395 (437)
Q Consensus 381 a~~~~~~~l~v~GG~ 395 (437)
++..-+.++|+.-..
T Consensus 213 ~v~~~g~~~yV~~~~ 227 (381)
T COG3391 213 AVDPDGNRVYVANDG 227 (381)
T ss_pred EECCCCCEEEEEecc
Confidence 444456678887544
No 233
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=35.40 E-value=3.5e+02 Score=24.71 Aligned_cols=189 Identities=15% Similarity=0.173 Sum_probs=88.7
Q ss_pred CCEEEEEc--Ccc----CCceE-EEEECC-CCceecCCCCCCC------cccee--eEEECCEEEEEeccCCCCCCCceE
Q 043540 184 GTELLVFG--KEV----HGNAI-YRYNLL-TNTWSTGMTMNTP------RCLFG--SASLGEIAILAGGCDPRGKLLKSA 247 (437)
Q Consensus 184 ~~~lyv~G--G~~----~~~~v-~~yd~~-t~~W~~~~~~~~~------r~~~~--~~~~~~~iyv~GG~~~~~~~~~~~ 247 (437)
+++|++|. +.. ....+ +..... -.+|+....++.. ..... ...-++.+++. .+..........
T Consensus 58 ~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~~-~~~~~~~~~~~~ 136 (275)
T PF13088_consen 58 DGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIAP-YYHESGGSFSAF 136 (275)
T ss_dssp TSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEEE-EEEESSCEEEEE
T ss_pred CCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceeccceeeeeEecCCCEEEE-EeeccccCcceE
Confidence 78888875 111 11121 234433 3589876433211 11112 33347788777 222111123444
Q ss_pred EEEECCCC-cEEecCCCCcC-CcCe-eEEEE-CCEEEEEecccCCCCccCCeEEEEECC-CCceEecC--CCCCcccCCC
Q 043540 248 ELYNSITG-TWMPISSMHKA-RKMC-SGVFM-DGKFYVIGGIGEGSSAMLTDVEMYDLE-TGKWTQIT--DMFPARIGSD 320 (437)
Q Consensus 248 ~~yd~~t~-~W~~~~~~~~~-r~~~-~~~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~-~~~W~~~~--~~~~~~~~~~ 320 (437)
..|....+ +|+.....+.. .... +.+.. +|+|+++.-.. ... .....+... -.+|+... .+|.....
T Consensus 137 ~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~-~~~---~~~~~~S~D~G~TWs~~~~~~~~~~~~~-- 210 (275)
T PF13088_consen 137 VYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTE-GND---DIYISRSTDGGRTWSPPQPTNLPNPNSS-- 210 (275)
T ss_dssp EEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEEC-SST---EEEEEEESSTTSS-EEEEEEECSSCCEE--
T ss_pred EEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEcc-CCC---cEEEEEECCCCCcCCCceecccCcccCC--
Confidence 55665544 59887655422 2222 22323 78999886542 111 234444444 34799864 34443333
Q ss_pred CcccccccCCCCCEEEE-ECCEEEEEeCC---CC--eEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEE
Q 043540 321 GVSVISAAGEAPPLLAV-VNNELYAADHE---KE--EVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIV 391 (437)
Q Consensus 321 ~~~~~~~~~~~~~~~~~-~~~~ly~~gg~---~~--~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v 391 (437)
..++. -+|+++++... .. .+..-.-..++|.....+........+|...+..-+++|+|
T Consensus 211 ------------~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 211 ------------ISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp ------------EEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred ------------ceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 22233 26788877542 11 23333334678998766554431112233333333568886
No 234
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=35.22 E-value=4e+02 Score=25.33 Aligned_cols=31 Identities=26% Similarity=0.596 Sum_probs=20.7
Q ss_pred CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCC
Q 043540 228 GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMH 264 (437)
Q Consensus 228 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~ 264 (437)
++.....||++ ..+.++|+++++=..++.-.
T Consensus 83 dgskVf~g~~D------k~~k~wDL~S~Q~~~v~~Hd 113 (347)
T KOG0647|consen 83 DGSKVFSGGCD------KQAKLWDLASGQVSQVAAHD 113 (347)
T ss_pred CCceEEeeccC------CceEEEEccCCCeeeeeecc
Confidence 44444556665 56788999999877665433
No 235
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=32.10 E-value=5.4e+02 Score=25.87 Aligned_cols=145 Identities=15% Similarity=0.072 Sum_probs=73.3
Q ss_pred ceEEEEECCCCceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEEC
Q 043540 197 NAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFMD 276 (437)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~ 276 (437)
..++++|..++.=..+...+..-..+.-.--+.+|.+..-.++ ...++++|..+.+=..+..... ...+....-|
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg----~~~iy~~dl~~~~~~~Lt~~~g-i~~~Ps~spd 292 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDG----SPDIYLMDLDGKNLPRLTNGFG-INTSPSWSPD 292 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCC----CccEEEEcCCCCcceecccCCc-cccCccCCCC
Confidence 4677788877766555443322222222223445544433332 3789999998877322322221 1222233335
Q ss_pred CE-EEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeC---CCCeE
Q 043540 277 GK-FYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADH---EKEEV 352 (437)
Q Consensus 277 g~-lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg---~~~~v 352 (437)
|+ |+..-... ....++.||++...=+.+..-...... + ...-+|+.+++-. ....|
T Consensus 293 G~~ivf~Sdr~-----G~p~I~~~~~~g~~~~riT~~~~~~~~--------------p-~~SpdG~~i~~~~~~~g~~~i 352 (425)
T COG0823 293 GSKIVFTSDRG-----GRPQIYLYDLEGSQVTRLTFSGGGNSN--------------P-VWSPDGDKIVFESSSGGQWDI 352 (425)
T ss_pred CCEEEEEeCCC-----CCcceEEECCCCCceeEeeccCCCCcC--------------c-cCCCCCCEEEEEeccCCceee
Confidence 54 44442221 122699999998876665422111111 1 1222444333322 12568
Q ss_pred EEEeCCCCc-EEEcc
Q 043540 353 RKFDKGRKL-WRTLG 366 (437)
Q Consensus 353 ~~yd~~~~~-W~~v~ 366 (437)
..+|+.++. |+.+.
T Consensus 353 ~~~~~~~~~~~~~lt 367 (425)
T COG0823 353 DKNDLASGGKIRILT 367 (425)
T ss_pred EEeccCCCCcEEEcc
Confidence 999998877 88775
No 236
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=31.89 E-value=1.2e+02 Score=33.13 Aligned_cols=74 Identities=22% Similarity=0.192 Sum_probs=51.8
Q ss_pred cCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEE
Q 043540 265 KARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYA 344 (437)
Q Consensus 265 ~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~ 344 (437)
..+.+++...++..-.++||.. ..+..||+.+.+=++......+- ..+.-.||+.+.
T Consensus 135 s~~~M~~~~~~~~~~~i~Gg~Q-------~~li~~Dl~~~~e~r~~~v~a~~----------------v~imR~Nnr~lf 191 (1118)
T KOG1275|consen 135 SMTKMASSLHMGPSTLIMGGLQ-------EKLIHIDLNTEKETRTTNVSASG----------------VTIMRYNNRNLF 191 (1118)
T ss_pred CHHHHHHHhccCCcceeecchh-------hheeeeecccceeeeeeeccCCc----------------eEEEEecCcEEE
Confidence 3455666677788888999875 34778888887666554432221 235556889999
Q ss_pred EeCCCCeEEEEeCCCCc
Q 043540 345 ADHEKEEVRKFDKGRKL 361 (437)
Q Consensus 345 ~gg~~~~v~~yd~~~~~ 361 (437)
+|...+.|..-|+.+.+
T Consensus 192 ~G~t~G~V~LrD~~s~~ 208 (1118)
T KOG1275|consen 192 CGDTRGTVFLRDPNSFE 208 (1118)
T ss_pred eecccceEEeecCCcCc
Confidence 99888889888887743
No 237
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=31.44 E-value=3.6e+02 Score=23.69 Aligned_cols=78 Identities=17% Similarity=0.126 Sum_probs=46.3
Q ss_pred CCceEEEEECCCCceecCC--CC---CCCccceeeEEE-CC-EEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCC
Q 043540 195 HGNAIYRYNLLTNTWSTGM--TM---NTPRCLFGSASL-GE-IAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKAR 267 (437)
Q Consensus 195 ~~~~v~~yd~~t~~W~~~~--~~---~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r 267 (437)
....+|++|..++.|..+. +- ..|. -+.-+ +. .++++|...+.-..-..+++|+..++.=+.+-+.....
T Consensus 86 giGkIYIkn~~~~~~~~L~i~~~~~k~sPK---~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~~dkk 162 (200)
T PF15525_consen 86 GIGKIYIKNLNNNNWWSLQIDQNEEKYSPK---YIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEWKDKK 162 (200)
T ss_pred cceeEEEEecCCCceEEEEecCcccccCCc---eeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeeccccc
Confidence 3468999999999887652 22 1233 22233 33 45566533222122367899999999988887776544
Q ss_pred cCeeEEEE
Q 043540 268 KMCSGVFM 275 (437)
Q Consensus 268 ~~~~~~~~ 275 (437)
.....+..
T Consensus 163 qQVis~e~ 170 (200)
T PF15525_consen 163 QQVISAEK 170 (200)
T ss_pred eeEEEEEE
Confidence 44433433
No 238
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=31.13 E-value=3.8e+02 Score=27.57 Aligned_cols=51 Identities=22% Similarity=0.229 Sum_probs=26.9
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEE---eCCEEEEEcCCCC
Q 043540 339 NNELYAADHEKEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRA---CGDQLIVIGGPRD 397 (437)
Q Consensus 339 ~~~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~---~~~~l~v~GG~~~ 397 (437)
+|+..+.=.....+.+||..+.+-.-+.. . +||.-+++ -+++.+++||.++
T Consensus 301 DG~~LA~VSqDGfLRvF~fdt~eLlg~mk-----S---YFGGLLCvcWSPDGKyIvtGGEDD 354 (636)
T KOG2394|consen 301 DGKYLATVSQDGFLRIFDFDTQELLGVMK-----S---YFGGLLCVCWSPDGKYIVTGGEDD 354 (636)
T ss_pred CCceEEEEecCceEEEeeccHHHHHHHHH-----h---hccceEEEEEcCCccEEEecCCcc
Confidence 44433333344557777776654322211 1 13322333 3789999999874
No 239
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=31.01 E-value=2.6e+02 Score=28.46 Aligned_cols=106 Identities=18% Similarity=0.256 Sum_probs=61.3
Q ss_pred EEeCCEEEEEcCccCCceEEEEECCCCceecCCCCCC--CccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEE
Q 043540 181 LAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNT--PRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWM 258 (437)
Q Consensus 181 ~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~ 258 (437)
..-++.-+++||+. ..+-++|+.+-+=+....++. +.++.-++..+.++.+.--.+ ..+.+||....+-
T Consensus 473 L~pdgrtLivGGea--stlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsd------GnI~vwDLhnq~~- 543 (705)
T KOG0639|consen 473 LLPDGRTLIVGGEA--STLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSD------GNIAVWDLHNQTL- 543 (705)
T ss_pred ecCCCceEEecccc--ceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccC------CcEEEEEccccee-
Confidence 44577778888873 457778888776665555554 344444455677775553222 3477888877643
Q ss_pred ecCCCCcCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCC
Q 043540 259 PISSMHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLET 303 (437)
Q Consensus 259 ~~~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~ 303 (437)
+..++..-.+.++..+ +|.-...||.+ +++-++|+.+
T Consensus 544 -VrqfqGhtDGascIdis~dGtklWTGGlD-------ntvRcWDlre 582 (705)
T KOG0639|consen 544 -VRQFQGHTDGASCIDISKDGTKLWTGGLD-------NTVRCWDLRE 582 (705)
T ss_pred -eecccCCCCCceeEEecCCCceeecCCCc-------cceeehhhhh
Confidence 2233333333344433 56666677775 3455555544
No 240
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.53 E-value=5.6e+02 Score=25.24 Aligned_cols=149 Identities=11% Similarity=0.111 Sum_probs=0.0
Q ss_pred EEEEEeccCCCCCCCceEEEEECCCCc--EEecC------CCCcCCcCeeEEEECC--EEEEEecccCCCCccCCeEEEE
Q 043540 230 IAILAGGCDPRGKLLKSAELYNSITGT--WMPIS------SMHKARKMCSGVFMDG--KFYVIGGIGEGSSAMLTDVEMY 299 (437)
Q Consensus 230 ~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~------~~~~~r~~~~~~~~~g--~lyv~GG~~~~~~~~~~~v~~y 299 (437)
.|+.+||-.. .+.+.+||.++.+ |+.-- .|..|.....+.++.+ ..-++-+.. ...+-.|
T Consensus 162 ~Iva~GGke~----~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~------~hqvR~Y 231 (412)
T KOG3881|consen 162 YIVATGGKEN----INELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITR------YHQVRLY 231 (412)
T ss_pred ceEecCchhc----ccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEec------ceeEEEe
Q ss_pred ECCCCc--eEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCcEEEccCCCCcccCCCc
Q 043540 300 DLETGK--WTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKLWRTLGRLPEQASSMNG 377 (437)
Q Consensus 300 d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~ 377 (437)
|+..++ -..++-+-.+.+. ....-++...++|.....+..||..++.--...--.....
T Consensus 232 Dt~~qRRPV~~fd~~E~~is~---------------~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGs---- 292 (412)
T KOG3881|consen 232 DTRHQRRPVAQFDFLENPISS---------------TGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGS---- 292 (412)
T ss_pred cCcccCcceeEeccccCccee---------------eeecCCCcEEEEecccchhheecccCceeeccccCCccCC----
Q ss_pred ccEEEEEeCC-EEEEEcCCCCCCCCeeEEEeeecCCCCCC
Q 043540 378 WGLAFRACGD-QLIVIGGPRDSGGGIVELNGWVPDEGPPH 416 (437)
Q Consensus 378 ~~~a~~~~~~-~l~v~GG~~~~~~~~~~~~~~~~d~~~~~ 416 (437)
-..+..+.. .++..+|.+ .++=++|..++.
T Consensus 293 -irsih~hp~~~~las~GLD--------RyvRIhD~ktrk 323 (412)
T KOG3881|consen 293 -IRSIHCHPTHPVLASCGLD--------RYVRIHDIKTRK 323 (412)
T ss_pred -cceEEEcCCCceEEeeccc--------eeEEEeecccch
No 241
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=29.11 E-value=1.7e+02 Score=29.45 Aligned_cols=62 Identities=15% Similarity=0.293 Sum_probs=37.4
Q ss_pred CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE---CCEEEEEeCCCCeE
Q 043540 276 DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV---NNELYAADHEKEEV 352 (437)
Q Consensus 276 ~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ly~~gg~~~~v 352 (437)
+|.-++..|++ ..+..+|.+|++=..--. .... +.++.. +..+|++|+....|
T Consensus 269 ~g~~fLS~sfD-------~~lKlwDtETG~~~~~f~--~~~~---------------~~cvkf~pd~~n~fl~G~sd~ki 324 (503)
T KOG0282|consen 269 CGTSFLSASFD-------RFLKLWDTETGQVLSRFH--LDKV---------------PTCVKFHPDNQNIFLVGGSDKKI 324 (503)
T ss_pred cCCeeeeeecc-------eeeeeeccccceEEEEEe--cCCC---------------ceeeecCCCCCcEEEEecCCCcE
Confidence 45666666765 246778888876533211 1100 122222 34899999988888
Q ss_pred EEEeCCCCc
Q 043540 353 RKFDKGRKL 361 (437)
Q Consensus 353 ~~yd~~~~~ 361 (437)
..||..+++
T Consensus 325 ~~wDiRs~k 333 (503)
T KOG0282|consen 325 RQWDIRSGK 333 (503)
T ss_pred EEEeccchH
Confidence 888887654
No 242
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=27.86 E-value=5.4e+02 Score=24.52 Aligned_cols=20 Identities=10% Similarity=0.028 Sum_probs=14.7
Q ss_pred CCceEEEEECCCCceecCCC
Q 043540 195 HGNAIYRYNLLTNTWSTGMT 214 (437)
Q Consensus 195 ~~~~v~~yd~~t~~W~~~~~ 214 (437)
....+-.||+.+++-..+..
T Consensus 92 ~Dk~~k~wDL~S~Q~~~v~~ 111 (347)
T KOG0647|consen 92 CDKQAKLWDLASGQVSQVAA 111 (347)
T ss_pred cCCceEEEEccCCCeeeeee
Confidence 34567889999998777653
No 243
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=27.48 E-value=9.4e+02 Score=27.22 Aligned_cols=90 Identities=13% Similarity=0.111 Sum_probs=54.3
Q ss_pred CEEEEECCEEEEEeCCCCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCC
Q 043540 333 PLLAVVNNELYAADHEKEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDE 412 (437)
Q Consensus 333 ~~~~~~~~~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~ 412 (437)
++++-+.|++++ |.+..++.||...++-.+...+..-+. .-........+|+| |-.. -.+..+.|++
T Consensus 939 ~Ai~~f~~~~La--gvG~~l~~YdlG~K~lLRk~e~k~~p~----~Is~iqt~~~RI~V-gD~q------eSV~~~~y~~ 1005 (1205)
T KOG1898|consen 939 GAICPFQGRVLA--GVGRFLRLYDLGKKKLLRKCELKFIPN----RISSIQTYGARIVV-GDIQ------ESVHFVRYRR 1005 (1205)
T ss_pred eEEeccCCEEEE--ecccEEEEeeCChHHHHhhhhhccCce----EEEEEeecceEEEE-eecc------ceEEEEEEec
Confidence 456667774443 467889999998776443332222111 01223344556655 3222 2456677888
Q ss_pred CCCCceecCccCCCceEeeeEEe
Q 043540 413 GPPHWKLLARQPMCGFVFNCTVM 435 (437)
Q Consensus 413 ~~~~W~~l~~~p~~~~~~~~~v~ 435 (437)
+.++-.....-|.+|....+.+|
T Consensus 1006 ~~n~l~~fadD~~pR~Vt~~~~l 1028 (1205)
T KOG1898|consen 1006 EDNQLIVFADDPVPRHVTALELL 1028 (1205)
T ss_pred CCCeEEEEeCCCccceeeEEEEe
Confidence 88888888888888887777665
No 244
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.23 E-value=5.5e+02 Score=24.46 Aligned_cols=144 Identities=10% Similarity=0.089 Sum_probs=76.0
Q ss_pred EEEecCceEEEeccCCCC----eeeCCCCCCccccccCCceeE--EeCCEEEEEcCcc-CCceEEEEECCCCceecCCCC
Q 043540 143 YFSCKLKEWEAFDPIHHR----WMHLPPMNASDCFMCADKESL--AVGTELLVFGKEV-HGNAIYRYNLLTNTWSTGMTM 215 (437)
Q Consensus 143 ~~~~~~~~~~~yDp~~~~----W~~l~~~p~~~~~~~~~~~~~--~~~~~lyv~GG~~-~~~~v~~yd~~t~~W~~~~~~ 215 (437)
.+......++.||..+++ |+.- +..+..-..--..+. -+++.||+.-++. ..--+|..|..++.=+.+..-
T Consensus 72 dF~NKYSHVH~yd~e~~~VrLLWkes--ih~~~~WaGEVSdIlYdP~~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L~~~ 149 (339)
T PF09910_consen 72 DFRNKYSHVHEYDTENDSVRLLWKES--IHDKTKWAGEVSDILYDPYEDRLLLARADGHANLGVYSLDRRTGKAEKLSSN 149 (339)
T ss_pred EEeeccceEEEEEcCCCeEEEEEecc--cCCccccccchhheeeCCCcCEEEEEecCCcceeeeEEEcccCCceeeccCC
Confidence 333455678999988875 5432 222222111000011 1355666653322 223578888888888777655
Q ss_pred CCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcE--EecCC---C---C-cCCcCeeEEEECCEEEEEeccc
Q 043540 216 NTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTW--MPISS---M---H-KARKMCSGVFMDGKFYVIGGIG 286 (437)
Q Consensus 216 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W--~~~~~---~---~-~~r~~~~~~~~~g~lyv~GG~~ 286 (437)
|.+ -++.+.+...|-+ +....-...+.+||..+++| +..+- + + ..|....++...+++|.+-+-.
T Consensus 150 ps~---KG~~~~D~a~F~i---~~~~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~rGG 223 (339)
T PF09910_consen 150 PSL---KGTLVHDYACFGI---NNFHKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFVRGG 223 (339)
T ss_pred CCc---CceEeeeeEEEec---cccccCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEEEecc
Confidence 544 2333444444422 32223468899999999999 43321 0 1 1122334566677877764332
Q ss_pred CCCCccCCeEEEEECCC
Q 043540 287 EGSSAMLTDVEMYDLET 303 (437)
Q Consensus 287 ~~~~~~~~~v~~yd~~~ 303 (437)
+.+.||..
T Consensus 224 ---------i~vgnP~~ 231 (339)
T PF09910_consen 224 ---------IFVGNPYN 231 (339)
T ss_pred ---------EEEeCCCC
Confidence 56666663
No 245
>PRK10115 protease 2; Provisional
Probab=26.80 E-value=8.3e+02 Score=26.34 Aligned_cols=182 Identities=13% Similarity=0.028 Sum_probs=87.3
Q ss_pred EeCCEEEEEcCc---cCCceEEEEECCCCceecCCC-CCCCccceeeEEE-CC-EEEEEeccCCCCCCCceEEEEECCCC
Q 043540 182 AVGTELLVFGKE---VHGNAIYRYNLLTNTWSTGMT-MNTPRCLFGSASL-GE-IAILAGGCDPRGKLLKSAELYNSITG 255 (437)
Q Consensus 182 ~~~~~lyv~GG~---~~~~~v~~yd~~t~~W~~~~~-~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~t~ 255 (437)
+-+++.++++-. .....+++.|+.++.. ++. ++..+ ...+.. ++ .+|+. ..+........++.++..|+
T Consensus 135 Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~--l~~~i~~~~--~~~~w~~D~~~~~y~-~~~~~~~~~~~v~~h~lgt~ 209 (686)
T PRK10115 135 TPDNTIMALAEDFLSRRQYGIRFRNLETGNW--YPELLDNVE--PSFVWANDSWTFYYV-RKHPVTLLPYQVWRHTIGTP 209 (686)
T ss_pred CCCCCEEEEEecCCCcEEEEEEEEECCCCCC--CCccccCcc--eEEEEeeCCCEEEEE-EecCCCCCCCEEEEEECCCC
Confidence 335566666522 2235788899987742 221 11112 333333 44 44443 33322123478999999888
Q ss_pred cE--EecCCCCcCCcCeeEEEE-CCEEEEEecccCCCCccCCeEEEEEC--CCCceE-ecCCCCCcccCCCCcccccccC
Q 043540 256 TW--MPISSMHKARKMCSGVFM-DGKFYVIGGIGEGSSAMLTDVEMYDL--ETGKWT-QITDMFPARIGSDGVSVISAAG 329 (437)
Q Consensus 256 ~W--~~~~~~~~~r~~~~~~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~--~~~~W~-~~~~~~~~~~~~~~~~~~~~~~ 329 (437)
.- +.+-.-+........... +++..++.... ...+.++.|+. .+..|. .++.......
T Consensus 210 ~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------------ 273 (686)
T PRK10115 210 ASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLAS----ATTSEVLLLDAELADAEPFVFLPRRKDHEY------------ 273 (686)
T ss_pred hhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEEC----CccccEEEEECcCCCCCceEEEECCCCCEE------------
Confidence 32 122111112222233333 56655554432 22345777773 234443 3322221111
Q ss_pred CCCCEEEEECCEEEEEeC---CCCeEEEEeCC-CCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEc
Q 043540 330 EAPPLLAVVNNELYAADH---EKEEVRKFDKG-RKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIG 393 (437)
Q Consensus 330 ~~~~~~~~~~~~ly~~gg---~~~~v~~yd~~-~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~G 393 (437)
.....++.+|+.-. ....+...+.. .++|+.+-.-..... . -.+...++.|++..
T Consensus 274 ----~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~-i----~~~~~~~~~l~~~~ 332 (686)
T PRK10115 274 ----SLDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIM-L----EGFTLFTDWLVVEE 332 (686)
T ss_pred ----EEEeCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCE-E----EEEEEECCEEEEEE
Confidence 13344678888742 34467777876 578988764322111 1 12334477777664
No 246
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=26.41 E-value=5.4e+02 Score=24.60 Aligned_cols=104 Identities=19% Similarity=0.409 Sum_probs=56.0
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCCCCCcccee----eEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcE
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFG----SASL--GEIAILAGGCDPRGKLLKSAELYNSITGTW 257 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~----~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W 257 (437)
+|..+++|- ....+-.||..|-+--.-.. |-..|. .+-+ .++|||.|..+ ..+-++|-.+++.
T Consensus 227 sGefllvgT--dHp~~rlYdv~T~Qcfvsan---Pd~qht~ai~~V~Ys~t~~lYvTaSkD------G~IklwDGVS~rC 295 (430)
T KOG0640|consen 227 SGEFLLVGT--DHPTLRLYDVNTYQCFVSAN---PDDQHTGAITQVRYSSTGSLYVTASKD------GAIKLWDGVSNRC 295 (430)
T ss_pred CCceEEEec--CCCceeEEeccceeEeeecC---cccccccceeEEEecCCccEEEEeccC------CcEEeeccccHHH
Confidence 445555553 34567788987654332222 222232 2223 57999998765 3466778777764
Q ss_pred E-ecCCCCcCCcCeeEEEE-CCEEEEEecccCCCCccCCeEEEEECCCCc
Q 043540 258 M-PISSMHKARKMCSGVFM-DGKFYVIGGIGEGSSAMLTDVEMYDLETGK 305 (437)
Q Consensus 258 ~-~~~~~~~~r~~~~~~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~ 305 (437)
. .+......-.-+++++- |+|..+..|.+ ..+..+.+.+++
T Consensus 296 v~t~~~AH~gsevcSa~Ftkn~kyiLsSG~D-------S~vkLWEi~t~R 338 (430)
T KOG0640|consen 296 VRTIGNAHGGSEVCSAVFTKNGKYILSSGKD-------STVKLWEISTGR 338 (430)
T ss_pred HHHHHhhcCCceeeeEEEccCCeEEeecCCc-------ceeeeeeecCCc
Confidence 2 22222233334555555 66666666765 235555666554
No 247
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=26.40 E-value=1.6e+02 Score=17.90 Aligned_cols=23 Identities=13% Similarity=0.333 Sum_probs=10.9
Q ss_pred EEEEEeCCCCeEEEEeCCCCc--EEE
Q 043540 341 ELYAADHEKEEVRKFDKGRKL--WRT 364 (437)
Q Consensus 341 ~ly~~gg~~~~v~~yd~~~~~--W~~ 364 (437)
++|+. ...+.++.+|.++++ |+.
T Consensus 2 ~v~~~-~~~g~l~AlD~~TG~~~W~~ 26 (38)
T PF01011_consen 2 RVYVG-TPDGYLYALDAKTGKVLWKF 26 (38)
T ss_dssp EEEEE-TTTSEEEEEETTTTSEEEEE
T ss_pred EEEEe-CCCCEEEEEECCCCCEEEee
Confidence 33443 334455555555543 544
No 248
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=26.12 E-value=6.3e+02 Score=24.72 Aligned_cols=218 Identities=12% Similarity=0.114 Sum_probs=100.6
Q ss_pred cccEEEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCceecCCCCCC
Q 043540 138 IEHWVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNT 217 (437)
Q Consensus 138 ~~~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~ 217 (437)
.+.||.........-.+|..+++-.. .++.-. ..+ ..+++..-.=|+|... ....|-+||+..|+--+-
T Consensus 162 ~n~wf~tgs~DrtikIwDlatg~Lkl--tltGhi--~~v-r~vavS~rHpYlFs~g-edk~VKCwDLe~nkvIR~----- 230 (460)
T KOG0285|consen 162 GNEWFATGSADRTIKIWDLATGQLKL--TLTGHI--ETV-RGVAVSKRHPYLFSAG-EDKQVKCWDLEYNKVIRH----- 230 (460)
T ss_pred CceeEEecCCCceeEEEEcccCeEEE--eecchh--hee-eeeeecccCceEEEec-CCCeeEEEechhhhhHHH-----
Confidence 35566555555556667777766432 111100 000 1223334444555321 335688999988764321
Q ss_pred CccceeeEEE------CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE---CCEEEEEecccCC
Q 043540 218 PRCLFGSASL------GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM---DGKFYVIGGIGEG 288 (437)
Q Consensus 218 ~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~---~g~lyv~GG~~~~ 288 (437)
-++|-++++ --.+++.||.| +.+-++|..|..= +--|...+.....+.+ |..+|- |..+
T Consensus 231 -YhGHlS~V~~L~lhPTldvl~t~grD------st~RvWDiRtr~~--V~~l~GH~~~V~~V~~~~~dpqvit-~S~D-- 298 (460)
T KOG0285|consen 231 -YHGHLSGVYCLDLHPTLDVLVTGGRD------STIRVWDIRTRAS--VHVLSGHTNPVASVMCQPTDPQVIT-GSHD-- 298 (460)
T ss_pred -hccccceeEEEeccccceeEEecCCc------ceEEEeeecccce--EEEecCCCCcceeEEeecCCCceEE-ecCC--
Confidence 112222222 14567777764 5566777766532 1122222333333333 455543 2222
Q ss_pred CCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEe-CCCCeEEEEeCCCCcEEEccC
Q 043540 289 SSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAAD-HEKEEVRKFDKGRKLWRTLGR 367 (437)
Q Consensus 289 ~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~g-g~~~~v~~yd~~~~~W~~v~~ 367 (437)
.++-.+|+..++=...- .....+. -+.+.+-+.+.+. +..+.|..++...+.... .
T Consensus 299 -----~tvrlWDl~agkt~~tl-t~hkksv---------------ral~lhP~e~~fASas~dnik~w~~p~g~f~~--n 355 (460)
T KOG0285|consen 299 -----STVRLWDLRAGKTMITL-THHKKSV---------------RALCLHPKENLFASASPDNIKQWKLPEGEFLQ--N 355 (460)
T ss_pred -----ceEEEeeeccCceeEee-eccccee---------------eEEecCCchhhhhccCCccceeccCCccchhh--c
Confidence 24666666654321110 0011111 1233444555543 234455555544433221 1
Q ss_pred CCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecC
Q 043540 368 LPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPD 411 (437)
Q Consensus 368 lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d 411 (437)
+ ..++....++.+..|-+|+.||.+ -.+..|++.
T Consensus 356 l----sgh~~iintl~~nsD~v~~~G~dn------g~~~fwdwk 389 (460)
T KOG0285|consen 356 L----SGHNAIINTLSVNSDGVLVSGGDN------GSIMFWDWK 389 (460)
T ss_pred c----ccccceeeeeeeccCceEEEcCCc------eEEEEEecC
Confidence 2 222233566667778999999865 234556553
No 249
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=25.49 E-value=5.2e+02 Score=23.56 Aligned_cols=142 Identities=14% Similarity=-0.015 Sum_probs=71.8
Q ss_pred eEEEE--ECCCCce-ecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCC-------
Q 043540 198 AIYRY--NLLTNTW-STGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKAR------- 267 (437)
Q Consensus 198 ~v~~y--d~~t~~W-~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r------- 267 (437)
.+.+| +...+.+ +....+..+..-..++.+++.|++.- .+..+.+|..++.=+.+.++....
T Consensus 115 ~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~--------~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~ 186 (275)
T PF00780_consen 115 KILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGT--------SKGFYLIDLNTGSPSELLDPSDSSSSFKSRN 186 (275)
T ss_pred EEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEe--------CCceEEEecCCCCceEEeCccCCcchhhhcc
Confidence 44444 4433556 55555555555566677777776653 255677888866655554333221
Q ss_pred ---cCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEE
Q 043540 268 ---KMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYA 344 (437)
Q Consensus 268 ---~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~ 344 (437)
....+..+++.-|++...+ .....|......+ .-...+. ..+..++.....|++
T Consensus 187 ~~~~~~~~~~~~~~e~Ll~~~~--------~g~fv~~~G~~~r---~~~i~W~------------~~p~~~~~~~pyli~ 243 (275)
T PF00780_consen 187 SSSKPLGIFQLSDNEFLLCYDN--------IGVFVNKNGEPSR---KSTIQWS------------SAPQSVAYSSPYLIA 243 (275)
T ss_pred cCCCceEEEEeCCceEEEEecc--------eEEEEcCCCCcCc---ccEEEcC------------CchhEEEEECCEEEE
Confidence 2234444553333332111 1222232221111 0000000 112345666676666
Q ss_pred EeCCCCeEEEEeCCCCcEEEccCCCCcc
Q 043540 345 ADHEKEEVRKFDKGRKLWRTLGRLPEQA 372 (437)
Q Consensus 345 ~gg~~~~v~~yd~~~~~W~~v~~lp~~~ 372 (437)
+ ..+.|++++..+.+..+.-.++..+
T Consensus 244 ~--~~~~iEV~~~~~~~lvQ~i~~~~~~ 269 (275)
T PF00780_consen 244 F--SSNSIEVRSLETGELVQTIPLPNIR 269 (275)
T ss_pred E--CCCEEEEEECcCCcEEEEEECCCEE
Confidence 6 4577999999999887765555443
No 250
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=25.09 E-value=6.5e+02 Score=26.81 Aligned_cols=119 Identities=13% Similarity=0.230 Sum_probs=59.1
Q ss_pred eEEEEECC--CCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEe-CCCCcEEEccCCCCc
Q 043540 295 DVEMYDLE--TGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFD-KGRKLWRTLGRLPEQ 371 (437)
Q Consensus 295 ~v~~yd~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd-~~~~~W~~v~~lp~~ 371 (437)
++..+.|. ++-|...-.+...-.. ++++..+...-|+..++.-+..+..+.+- .+...|...+.....
T Consensus 290 smiiW~pd~~tGiWv~~vRlGe~gg~---------a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH 360 (764)
T KOG1063|consen 290 SMIIWKPDENTGIWVDVVRLGEVGGS---------AGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGH 360 (764)
T ss_pred ceEEEecCCccceEEEEEEeeccccc---------ccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccc
Confidence 34445444 4478765433322211 22333333344554455545555555554 566779887543322
Q ss_pred ccCCCcccEEEEEe--CCEEEEEcCCCCCCCCeeEEEeeecCCCCCCceecCccCCCceEeeeE
Q 043540 372 ASSMNGWGLAFRAC--GDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKLLARQPMCGFVFNCT 433 (437)
Q Consensus 372 ~~~~~~~~~a~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~ 433 (437)
-. +..-+.- .|..++.-|.+ + +..++..-....+|.++++.+.-.+.-.|+
T Consensus 361 ~~-----~V~dv~W~psGeflLsvs~D-Q-----TTRlFa~wg~q~~wHEiaRPQiHGyDl~c~ 413 (764)
T KOG1063|consen 361 VD-----GVKDVDWDPSGEFLLSVSLD-Q-----TTRLFARWGRQQEWHEIARPQIHGYDLTCL 413 (764)
T ss_pred cc-----cceeeeecCCCCEEEEeccc-c-----ceeeecccccccceeeecccccccccceee
Confidence 21 1111121 25555544443 1 233443335566799999988777776664
No 251
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=24.53 E-value=1.5e+02 Score=16.92 Aligned_cols=25 Identities=8% Similarity=0.193 Sum_probs=16.4
Q ss_pred EEECCEEEEEeCCCCeEEEEeCCCCc
Q 043540 336 AVVNNELYAADHEKEEVRKFDKGRKL 361 (437)
Q Consensus 336 ~~~~~~ly~~gg~~~~v~~yd~~~~~ 361 (437)
...++.+|+.. ....++.+|.++.+
T Consensus 3 ~~~~~~v~~~~-~~g~l~a~d~~~G~ 27 (33)
T smart00564 3 VLSDGTVYVGS-TDGTLYALDAKTGE 27 (33)
T ss_pred EEECCEEEEEc-CCCEEEEEEcccCc
Confidence 34566766654 45778888887654
No 252
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=23.69 E-value=7.7e+02 Score=24.87 Aligned_cols=199 Identities=8% Similarity=0.012 Sum_probs=0.0
Q ss_pred ceeEEeCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcE
Q 043540 178 KESLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTW 257 (437)
Q Consensus 178 ~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W 257 (437)
+++++.+...|+++|.... ++|++...|+.--.+-.-...-.-.--.+-++..++.||-|+.-..-.-+...+.....
T Consensus 85 ~al~s~n~G~~l~ag~i~g-~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~- 162 (476)
T KOG0646|consen 85 HALASSNLGYFLLAGTISG-NLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDH- 162 (476)
T ss_pred eeeecCCCceEEEeecccC-cEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCC-
Q ss_pred EecCCCCcCCcCeeEEEE---------CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCccccccc
Q 043540 258 MPISSMHKARKMCSGVFM---------DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAA 328 (437)
Q Consensus 258 ~~~~~~~~~r~~~~~~~~---------~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 328 (437)
.+..-..-..|+..+. +.++|-.+-.. ++-+||+..+.--.--..|.....
T Consensus 163 --~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~--------t~k~wdlS~g~LLlti~fp~si~a---------- 222 (476)
T KOG0646|consen 163 --SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDR--------TIKLWDLSLGVLLLTITFPSSIKA---------- 222 (476)
T ss_pred --CccceeeeccCcceeEEEEecCCCccceEEEecCCc--------eEEEEEeccceeeEEEecCCccee----------
Q ss_pred CCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCc--------EEEccCCCCcccCCCccc-----EEEEEeCCEEEEEcCC
Q 043540 329 GEAPPLLAVVNNELYAADHEKEEVRKFDKGRKL--------WRTLGRLPEQASSMNGWG-----LAFRACGDQLIVIGGP 395 (437)
Q Consensus 329 ~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~--------W~~v~~lp~~~~~~~~~~-----~a~~~~~~~l~v~GG~ 395 (437)
.++--.++.+.+|...+.|+..+..+-. =......-..+....+-+ .-.+..++.+++.|+.
T Consensus 223 -----v~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~ 297 (476)
T KOG0646|consen 223 -----VALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDE 297 (476)
T ss_pred -----EEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCC
Q ss_pred CCCCCCeeEEEeee
Q 043540 396 RDSGGGIVELNGWV 409 (437)
Q Consensus 396 ~~~~~~~~~~~~~~ 409 (437)
+.. +.+|+
T Consensus 298 dg~------VcvWd 305 (476)
T KOG0646|consen 298 DGK------VCVWD 305 (476)
T ss_pred CCC------EEEEe
No 253
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=23.58 E-value=3.3e+02 Score=30.64 Aligned_cols=77 Identities=18% Similarity=0.351 Sum_probs=0.0
Q ss_pred EEecCCCCcCCcCeeEEEE----CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCC
Q 043540 257 WMPISSMHKARKMCSGVFM----DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAP 332 (437)
Q Consensus 257 W~~~~~~~~~r~~~~~~~~----~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (437)
|..+..|...-....+++- .|+||+.|+.. .|-++|..+. ..+.++|..-..
T Consensus 1154 w~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r--------~IRIWDa~~E--~~~~diP~~s~t-------------- 1209 (1387)
T KOG1517|consen 1154 WSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVR--------SIRIWDAHKE--QVVADIPYGSST-------------- 1209 (1387)
T ss_pred eccccccCccCCCCCeeeehhhhCCeEEecCCee--------EEEEEecccc--eeEeecccCCCc--------------
Q ss_pred CEEEEE-----CCEEEEEeCCCCeEEEEeCC
Q 043540 333 PLLAVV-----NNELYAADHEKEEVRKFDKG 358 (437)
Q Consensus 333 ~~~~~~-----~~~ly~~gg~~~~v~~yd~~ 358 (437)
++.++ +|.++++|...+.+..||..
T Consensus 1210 -~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R 1239 (1387)
T KOG1517|consen 1210 -LVTALSADLVHGNIIAAGFADGSVRVYDRR 1239 (1387)
T ss_pred -cceeecccccCCceEEEeecCCceEEeecc
No 254
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=23.29 E-value=7.9e+02 Score=26.35 Aligned_cols=50 Identities=18% Similarity=0.349 Sum_probs=29.0
Q ss_pred ceEEEEECCCCcEEecCCCCcCCc-CeeE-EEECCEEEEEecccCCCCccCCeEEEEECCC
Q 043540 245 KSAELYNSITGTWMPISSMHKARK-MCSG-VFMDGKFYVIGGIGEGSSAMLTDVEMYDLET 303 (437)
Q Consensus 245 ~~~~~yd~~t~~W~~~~~~~~~r~-~~~~-~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~ 303 (437)
..+.++|..+++ .+..+..... ..+. ...+|.+.+.||.+ +++-.+|...
T Consensus 599 ~~I~iWDl~~~~--~v~~l~~Ht~ti~SlsFS~dg~vLasgg~D-------nsV~lWD~~~ 650 (707)
T KOG0263|consen 599 GLIKIWDLANGS--LVKQLKGHTGTIYSLSFSRDGNVLASGGAD-------NSVRLWDLTK 650 (707)
T ss_pred CcEEEEEcCCCc--chhhhhcccCceeEEEEecCCCEEEecCCC-------CeEEEEEchh
Confidence 457788887753 2222222211 1222 24589999999986 4566777654
No 255
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=23.05 E-value=7.9e+02 Score=24.78 Aligned_cols=136 Identities=15% Similarity=0.177 Sum_probs=68.5
Q ss_pred eEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeE-EEEC--CEEEEEecccCCCCccCCeEEEEE
Q 043540 224 SASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSG-VFMD--GKFYVIGGIGEGSSAMLTDVEMYD 300 (437)
Q Consensus 224 ~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~-~~~~--g~lyv~GG~~~~~~~~~~~v~~yd 300 (437)
+++-+++.++.||.+ .-+.++|..|.. .+..++..|..... ++-. ..+|..+-. .++-+|+
T Consensus 209 avS~Dgkylatgg~d------~~v~Iw~~~t~e--hv~~~~ghr~~V~~L~fr~gt~~lys~s~D--------rsvkvw~ 272 (479)
T KOG0299|consen 209 AVSSDGKYLATGGRD------RHVQIWDCDTLE--HVKVFKGHRGAVSSLAFRKGTSELYSASAD--------RSVKVWS 272 (479)
T ss_pred EEcCCCcEEEecCCC------ceEEEecCcccc--hhhcccccccceeeeeeecCccceeeeecC--------CceEEEe
Confidence 344588999999865 456778877653 22234444443333 3332 356665322 1355555
Q ss_pred CCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCcEEEccCCCCcccCCCcccE
Q 043540 301 LETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKLWRTLGRLPEQASSMNGWGL 380 (437)
Q Consensus 301 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~ 380 (437)
.+.... ....++|+..++ ..-+.-.+++..+||....+..|+....+ +.+-.-+. +.--
T Consensus 273 ~~~~s~------vetlyGHqd~v~--------~IdaL~reR~vtVGgrDrT~rlwKi~ees-qlifrg~~------~sid 331 (479)
T KOG0299|consen 273 IDQLSY------VETLYGHQDGVL--------GIDALSRERCVTVGGRDRTVRLWKIPEES-QLIFRGGE------GSID 331 (479)
T ss_pred hhHhHH------HHHHhCCcccee--------eechhcccceEEeccccceeEEEeccccc-eeeeeCCC------CCee
Confidence 543322 122334322111 11122357788888877777777662221 11111111 1123
Q ss_pred EEEEeCCEEEEEcCCC
Q 043540 381 AFRACGDQLIVIGGPR 396 (437)
Q Consensus 381 a~~~~~~~l~v~GG~~ 396 (437)
+++.+++.=||.|+-+
T Consensus 332 cv~~In~~HfvsGSdn 347 (479)
T KOG0299|consen 332 CVAFINDEHFVSGSDN 347 (479)
T ss_pred eEEEecccceeeccCC
Confidence 4556788889998754
No 256
>PF04616 Glyco_hydro_43: Glycosyl hydrolases family 43; InterPro: IPR006710 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 43 GH43 from CAZY includes enzymes with the following activities, beta-xylosidase (3.2.1.37 from EC), alpha-L-arabinofuranosidase (3.2.1.55 from EC); arabinanase (3.2.1.99 from EC), and xylanase (3.2.1.8 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3KST_B 1UV4_A 1YRZ_A 1YIF_B 3NQH_A 3QED_D 3QEE_A 3QEF_B 1YI7_A 1Y7B_B ....
Probab=22.50 E-value=6e+02 Score=23.26 Aligned_cols=184 Identities=15% Similarity=0.140 Sum_probs=92.1
Q ss_pred cceeeEEECCEEEEEeccCCCCCCCceEEEEECCC-CcEEecCCCC----cCC-------cCeeEEEECCEEEEEecccC
Q 043540 220 CLFGSASLGEIAILAGGCDPRGKLLKSAELYNSIT-GTWMPISSMH----KAR-------KMCSGVFMDGKFYVIGGIGE 287 (437)
Q Consensus 220 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t-~~W~~~~~~~----~~r-------~~~~~~~~~g~lyv~GG~~~ 287 (437)
....++..++..|+++..+... ..+.++.+.. ..|+...... ... ....+...+|+.|++-....
T Consensus 11 ~DP~i~~~~~~yY~~~t~~~~~---~~i~v~~S~DL~~W~~~g~~~~~~~~~~~~~~~~~WAP~i~~~~g~yy~y~~~~~ 87 (286)
T PF04616_consen 11 ADPSIVRFGDGYYLYGTTDPEG---PGIPVWSSKDLVNWTDAGNVLPPPPDWDWANNGNIWAPEIHYINGKYYMYYSDSG 87 (286)
T ss_dssp CSEEEEEETTEEEEEEEEBTCE---SBEEEEEESSSSSEEEEEECESSTTTTSTTTSETTEEEEEEEETTEEEEEEEEES
T ss_pred CCCEEEEECCEEEEEEEcCCCC---CeEEEEECCCCcccccceeeecccccccccccccccCCeEEEcCCeEEEEEEccC
Confidence 3456777889999998765432 5566666554 3498764211 111 23445667999888766211
Q ss_pred CCCccCCeEEEEECCCCceEecCCCCC--cccCCCCcccccccCCCCCEEEEEC-CEEEEEeCC--C----C--eEEEEe
Q 043540 288 GSSAMLTDVEMYDLETGKWTQITDMFP--ARIGSDGVSVISAAGEAPPLLAVVN-NELYAADHE--K----E--EVRKFD 356 (437)
Q Consensus 288 ~~~~~~~~v~~yd~~~~~W~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~ly~~gg~--~----~--~v~~yd 356 (437)
........+..=|--.+.|+....+.. ..... +.+...+ |+.|++-+. . . .+...+
T Consensus 88 ~~~~~~~~va~a~~~~Gp~~~~~~~~~~~~~~iD-------------~~vf~d~dG~~Yl~~~~~~~~~~~~~i~~~~l~ 154 (286)
T PF04616_consen 88 GDAGSGIGVATADSPDGPWTDPGKIPIPGGNSID-------------PSVFVDDDGKYYLYYGSWDNGDPGGGIYIAELD 154 (286)
T ss_dssp TSTTEEEEEEEESSTTS-EEEEEEEEEESSSSSS-------------EEEEEETTSEEEEEEEESTTTSSEEEEEEEEEE
T ss_pred CCCCcceeEEEeCCcccccccccceeeccccccC-------------ceEEEecCCCcEEeCcccCCCccceeEEeeccc
Confidence 111111223333444478987765432 11111 4566666 899988432 1 1 344555
Q ss_pred CCCCcEEEcc-C--CCCc--ccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCceec
Q 043540 357 KGRKLWRTLG-R--LPEQ--ASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKLL 420 (437)
Q Consensus 357 ~~~~~W~~v~-~--lp~~--~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~l 420 (437)
.....+..-. . .+.. ......-|..+...+|+.|++-.....+.. ..+.+.+-+.-..-|+..
T Consensus 155 ~d~~~~~~~~~~~~~~~~~~~~~~~~Egp~~~k~~g~yYl~~s~~~~~~~-y~v~~~~s~~~~gp~~~~ 222 (286)
T PF04616_consen 155 PDGTSLTGEPVVVIFPGDEGWDGGVVEGPFVFKHGGKYYLFYSAGGTGSP-YQVGYARSDSPLGPWEWK 222 (286)
T ss_dssp TTTSSEEEEECEEEEEESGSSTTTBEEEEEEEEETTEEEEEEEESGSSTT-TEEEEEEESSTTSGGEET
T ss_pred CccccccCcccccccccccccCCccccceEEEEcCCCEEEEEeccCCCCC-ceEEEeeccCCCCceeec
Confidence 5555544322 1 0100 000011256777889998887322111111 334445444445566655
No 257
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=22.40 E-value=4.2e+02 Score=25.45 Aligned_cols=91 Identities=18% Similarity=0.216 Sum_probs=51.4
Q ss_pred CCCccce-eeEEECCEE-EEE--eccCC----CCCCCceEEEEECCCCcEEec-CCCCcCCcCeeEEEECCEEEEEeccc
Q 043540 216 NTPRCLF-GSASLGEIA-ILA--GGCDP----RGKLLKSAELYNSITGTWMPI-SSMHKARKMCSGVFMDGKFYVIGGIG 286 (437)
Q Consensus 216 ~~~r~~~-~~~~~~~~i-yv~--GG~~~----~~~~~~~~~~yd~~t~~W~~~-~~~~~~r~~~~~~~~~g~lyv~GG~~ 286 (437)
|.-|+.. +++..+++. ||. |-.|. .....+.-.+.|..+|+=-.- -.||. +--.++|+||+.--..
T Consensus 148 ~eDRCHLNGlA~~~g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~evl~~GLsmPh-----SPRWhdgrLwvldsgt 222 (335)
T TIGR03032 148 PEDRCHLNGMALDDGEPRYVTALSQSDVADGWREGRRDGGCVIDIPSGEVVASGLSMPH-----SPRWYQGKLWLLNSGR 222 (335)
T ss_pred ccCceeecceeeeCCeEEEEEEeeccCCcccccccccCCeEEEEeCCCCEEEcCccCCc-----CCcEeCCeEEEEECCC
Confidence 3446544 566666653 433 21110 011234445577777742211 13442 2234789999985433
Q ss_pred CCCCccCCeEEEEECCCCceEecCCCCCcccC
Q 043540 287 EGSSAMLTDVEMYDLETGKWTQITDMFPARIG 318 (437)
Q Consensus 287 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~ 318 (437)
..+..+|+++++.+.+..+|.-..+
T Consensus 223 -------Gev~~vD~~~G~~e~Va~vpG~~rG 247 (335)
T TIGR03032 223 -------GELGYVDPQAGKFQPVAFLPGFTRG 247 (335)
T ss_pred -------CEEEEEcCCCCcEEEEEECCCCCcc
Confidence 4688999999999999877754444
No 258
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=22.14 E-value=7.5e+02 Score=24.19 Aligned_cols=103 Identities=17% Similarity=0.329 Sum_probs=61.0
Q ss_pred CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcC--eeEEEECCEEEEEecccCCCCccCCeEEEEECCCC-
Q 043540 228 GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKM--CSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETG- 304 (437)
Q Consensus 228 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~--~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~- 304 (437)
++.+.+.||-+ +..++++..++.|- ..++...-. +.+...+|.+.+.|+..+ .+.+++.+++
T Consensus 75 ~~~l~aTGGgD------D~AflW~~~~ge~~--~eltgHKDSVt~~~FshdgtlLATGdmsG-------~v~v~~~stg~ 139 (399)
T KOG0296|consen 75 NNNLVATGGGD------DLAFLWDISTGEFA--GELTGHKDSVTCCSFSHDGTLLATGDMSG-------KVLVFKVSTGG 139 (399)
T ss_pred CCceEEecCCC------ceEEEEEccCCcce--eEecCCCCceEEEEEccCceEEEecCCCc-------cEEEEEcccCc
Confidence 46677778754 45678888888753 223322222 334456899999998862 3666666554
Q ss_pred -ceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCc
Q 043540 305 -KWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKL 361 (437)
Q Consensus 305 -~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~ 361 (437)
+|.....+..-- - + .|++ .+.++++|.....+|.|...++.
T Consensus 140 ~~~~~~~e~~die-W------l----~WHp-----~a~illAG~~DGsvWmw~ip~~~ 181 (399)
T KOG0296|consen 140 EQWKLDQEVEDIE-W------L----KWHP-----RAHILLAGSTDGSVWMWQIPSQA 181 (399)
T ss_pred eEEEeecccCceE-E------E----Eecc-----cccEEEeecCCCcEEEEECCCcc
Confidence 465542211100 0 0 0001 45678888888889999988763
No 259
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=21.42 E-value=6.9e+02 Score=23.48 Aligned_cols=189 Identities=14% Similarity=0.202 Sum_probs=92.0
Q ss_pred CceEEEEECCCCceec---CC-CCCCCccceeeEEEC--------CEEEEEeccCCCCCCCceEEEEECCCCc-EEecCC
Q 043540 196 GNAIYRYNLLTNTWST---GM-TMNTPRCLFGSASLG--------EIAILAGGCDPRGKLLKSAELYNSITGT-WMPISS 262 (437)
Q Consensus 196 ~~~v~~yd~~t~~W~~---~~-~~~~~r~~~~~~~~~--------~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~ 262 (437)
...+..||+.|++-.+ ++ ..-.+.+...-.+++ +.+|+.--. ...+.+||..+++ |+.+..
T Consensus 33 ~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~------~~glIV~dl~~~~s~Rv~~~ 106 (287)
T PF03022_consen 33 PPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSG------GPGLIVYDLATGKSWRVLHN 106 (287)
T ss_dssp --EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETT------TCEEEEEETTTTEEEEEETC
T ss_pred CcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCC------cCcEEEEEccCCcEEEEecC
Confidence 3588999999997533 22 222244444444432 367877421 2489999999976 777765
Q ss_pred CCcCCcCeeEEEECCEEEEEe-cc---cCCCCccCCeEEEEECCCC-ceEecCC--CCCcccCCCC--cccccccCC---
Q 043540 263 MHKARKMCSGVFMDGKFYVIG-GI---GEGSSAMLTDVEMYDLETG-KWTQITD--MFPARIGSDG--VSVISAAGE--- 330 (437)
Q Consensus 263 ~~~~r~~~~~~~~~g~lyv~G-G~---~~~~~~~~~~v~~yd~~~~-~W~~~~~--~~~~~~~~~~--~~~~~~~~~--- 330 (437)
...+.....-...+|..+-.. |. .-.....-.....|.+-+. ++-.++. +..+...... .-.+...|.
T Consensus 107 ~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~ 186 (287)
T PF03022_consen 107 SFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGS 186 (287)
T ss_dssp GCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---
T ss_pred CcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCC
Confidence 433333444555666655332 21 1000011113455665443 3334431 1111000000 000000000
Q ss_pred CCCEEE-EECCEEEEEeCCCCeEEEEeCCC----CcEEEccCCCCcccCCCcccEEEEEeC---CEEEEEcC
Q 043540 331 APPLLA-VVNNELYAADHEKEEVRKFDKGR----KLWRTLGRLPEQASSMNGWGLAFRACG---DQLIVIGG 394 (437)
Q Consensus 331 ~~~~~~-~~~~~ly~~gg~~~~v~~yd~~~----~~W~~v~~lp~~~~~~~~~~~a~~~~~---~~l~v~GG 394 (437)
...+++ --+|.||+..-..+.|.++|+.+ +....+..-+.... |-.++.... +.||++--
T Consensus 187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~----~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQ----WPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GS----SEEEEEE-T--TS-EEEEE-
T ss_pred CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceee----ccceeeeccccCceEEEEEC
Confidence 002223 34789999888889999999988 56777765555222 344555555 78888753
No 260
>PF14312 FG-GAP_2: FG-GAP repeat
Probab=21.33 E-value=1.7e+02 Score=19.25 Aligned_cols=19 Identities=32% Similarity=0.697 Sum_probs=12.8
Q ss_pred cccEEEEEeCCEEEEEcCCC
Q 043540 377 GWGLAFRACGDQLIVIGGPR 396 (437)
Q Consensus 377 ~~~~a~~~~~~~l~v~GG~~ 396 (437)
.||.++...++. +|+|-..
T Consensus 17 ~FG~sVai~gd~-~vVGA~~ 35 (49)
T PF14312_consen 17 YFGWSVAISGDT-LVVGAPG 35 (49)
T ss_pred cceeEEEEeCCE-EEEeeec
Confidence 468777667775 6777554
No 261
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=21.09 E-value=2.9e+02 Score=29.09 Aligned_cols=74 Identities=15% Similarity=0.275 Sum_probs=0.0
Q ss_pred CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCE--EEEEeCCCCeEE
Q 043540 276 DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNE--LYAADHEKEEVR 353 (437)
Q Consensus 276 ~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--ly~~gg~~~~v~ 353 (437)
+..+++.||.+ ..+..||..+..=+.+...........++...-+ --....|.. +++-||..+.+.
T Consensus 129 ~~~lvaSgGLD-------~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~s-----iYSLA~N~t~t~ivsGgtek~lr 196 (735)
T KOG0308|consen 129 NNELVASGGLD-------RKIFLWDINTGTATLVASFNNVTVNSLGSGPKDS-----IYSLAMNQTGTIIVSGGTEKDLR 196 (735)
T ss_pred CceeEEecCCC-------ccEEEEEccCcchhhhhhccccccccCCCCCccc-----eeeeecCCcceEEEecCcccceE
Q ss_pred EEeCCCCc
Q 043540 354 KFDKGRKL 361 (437)
Q Consensus 354 ~yd~~~~~ 361 (437)
.||+.+++
T Consensus 197 ~wDprt~~ 204 (735)
T KOG0308|consen 197 LWDPRTCK 204 (735)
T ss_pred Eecccccc
No 262
>PF14298 DUF4374: Domain of unknown function (DUF4374)
Probab=20.61 E-value=8.8e+02 Score=24.44 Aligned_cols=59 Identities=15% Similarity=0.146 Sum_probs=39.7
Q ss_pred cCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEe----CCCCeEEEEeCCCCc
Q 043540 292 MLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAAD----HEKEEVRKFDKGRKL 361 (437)
Q Consensus 292 ~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~g----g~~~~v~~yd~~~~~ 361 (437)
....+.+||..+.+.+.+..+|..... .......+-+|++|+-= +...-||++|+.+.+
T Consensus 365 ~~~~laI~d~~~kt~t~V~glP~~~is-----------~~~~~~~ve~G~aYi~Vtt~~g~~~~IY~iDp~Tat 427 (435)
T PF14298_consen 365 DAKKLAIFDVSNKTFTWVTGLPADLIS-----------GFGNAPYVENGKAYIPVTTEDGSDPYIYKIDPATAT 427 (435)
T ss_pred ccceEEEEEccCceeEEeccCChhhcc-----------ccccceEeeCCEEEEEEeecCCCceeEEEEcCcccc
Confidence 355677899999999988888866211 11123456788888752 223569999998865
No 263
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=20.05 E-value=7.1e+02 Score=23.12 Aligned_cols=58 Identities=31% Similarity=0.568 Sum_probs=35.5
Q ss_pred CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEE---ECCEEEEEeCCCCeE
Q 043540 276 DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV---VNNELYAADHEKEEV 352 (437)
Q Consensus 276 ~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ly~~gg~~~~v 352 (437)
+..+||.||.. ..++.||..|+. ++.....+..+ +..++ =+|.+|..|.....|
T Consensus 235 ~k~~fVaGged-------~~~~kfDy~Tge--Ei~~~nkgh~g--------------pVhcVrFSPdGE~yAsGSEDGTi 291 (334)
T KOG0278|consen 235 KKEFFVAGGED-------FKVYKFDYNTGE--EIGSYNKGHFG--------------PVHCVRFSPDGELYASGSEDGTI 291 (334)
T ss_pred CCceEEecCcc-------eEEEEEeccCCc--eeeecccCCCC--------------ceEEEEECCCCceeeccCCCceE
Confidence 56899999976 247788887763 22222222222 22222 289999999776666
Q ss_pred EEEe
Q 043540 353 RKFD 356 (437)
Q Consensus 353 ~~yd 356 (437)
..+.
T Consensus 292 rlWQ 295 (334)
T KOG0278|consen 292 RLWQ 295 (334)
T ss_pred EEEE
Confidence 6543
Done!