Query 043540
Match_columns 437
No_of_seqs 385 out of 2838
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 10:01:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043540.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043540hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zgk_A Kelch-like ECH-associat 100.0 6.6E-45 2.2E-49 348.2 31.1 280 118-435 17-308 (308)
2 2xn4_A Kelch-like protein 2; s 100.0 2E-44 6.9E-49 343.6 31.5 277 124-436 14-299 (302)
3 3ii7_A Kelch-like protein 7; p 100.0 1.8E-44 6.1E-49 344.6 29.4 274 125-435 11-293 (306)
4 2vpj_A Kelch-like protein 12; 100.0 1.5E-43 5.3E-48 337.2 31.3 277 124-436 13-300 (301)
5 4asc_A Kelch repeat and BTB do 100.0 9E-42 3.1E-46 327.4 29.2 261 149-436 13-297 (315)
6 2woz_A Kelch repeat and BTB do 100.0 2E-41 6.9E-46 325.4 27.6 261 149-436 24-307 (318)
7 1zgk_A Kelch-like ECH-associat 100.0 1.8E-38 6.2E-43 303.5 26.8 232 181-436 21-262 (308)
8 3ii7_A Kelch-like protein 7; p 100.0 5.4E-38 1.8E-42 299.7 29.2 228 184-436 11-247 (306)
9 2uvk_A YJHT; unknown function, 100.0 2.7E-38 9.3E-43 308.4 24.6 267 122-424 16-352 (357)
10 2uvk_A YJHT; unknown function, 100.0 8.2E-38 2.8E-42 305.0 27.6 253 163-436 2-316 (357)
11 2xn4_A Kelch-like protein 2; s 100.0 2E-37 7E-42 295.1 28.2 230 181-435 12-250 (302)
12 2vpj_A Kelch-like protein 12; 100.0 9.5E-37 3.2E-41 290.3 28.2 230 182-436 12-253 (301)
13 4asc_A Kelch repeat and BTB do 100.0 1.4E-37 4.8E-42 298.2 21.8 241 122-395 42-306 (315)
14 2woz_A Kelch repeat and BTB do 100.0 6.4E-37 2.2E-41 294.0 21.4 244 122-394 53-315 (318)
15 2zwa_A Leucine carboxyl methyl 100.0 4.9E-33 1.7E-37 293.5 22.4 217 181-421 394-642 (695)
16 2zwa_A Leucine carboxyl methyl 100.0 1.2E-32 4E-37 290.7 23.3 258 124-413 396-693 (695)
17 1k3i_A Galactose oxidase precu 100.0 2.9E-32 9.8E-37 286.9 17.8 268 150-435 167-518 (656)
18 1k3i_A Galactose oxidase precu 100.0 5.7E-29 2E-33 261.7 21.7 249 125-396 197-531 (656)
19 2ovr_B FBW7, F-BOX/WD repeat p 98.9 5.5E-07 1.9E-11 89.1 26.4 237 86-363 16-312 (445)
20 1p22_A F-BOX/WD-repeat protein 98.8 1.1E-06 3.6E-11 86.9 23.0 272 87-410 9-363 (435)
21 3v7d_B Cell division control p 98.7 9E-06 3.1E-10 80.6 25.6 42 87-128 13-55 (464)
22 3dsm_A Uncharacterized protein 98.6 3.9E-05 1.3E-09 72.8 26.0 223 149-417 17-256 (328)
23 1fs1_A SKP2 F-BOX, cyclin A/CD 98.5 7.1E-08 2.4E-12 65.4 3.7 45 86-130 6-50 (53)
24 3mbr_X Glutamine cyclotransfer 98.5 2.9E-05 9.8E-10 70.0 20.8 189 179-396 25-225 (243)
25 3nol_A Glutamine cyclotransfer 98.2 7.1E-05 2.4E-09 68.0 17.6 189 181-396 49-246 (262)
26 3dsm_A Uncharacterized protein 98.2 0.00073 2.5E-08 63.8 24.7 191 196-418 16-216 (328)
27 3nok_A Glutaminyl cyclase; bet 98.0 0.00018 6.1E-09 65.4 15.9 183 180-396 60-256 (268)
28 3q7m_A Lipoprotein YFGL, BAMB; 98.0 0.0057 1.9E-07 58.5 27.0 202 140-393 104-325 (376)
29 2iwa_A Glutamine cyclotransfer 98.0 0.0011 3.6E-08 60.7 20.4 183 185-396 32-227 (266)
30 3q7m_A Lipoprotein YFGL, BAMB; 97.9 0.0044 1.5E-07 59.3 25.4 204 141-393 145-366 (376)
31 2e31_A FBS1, F-box only protei 97.9 4.2E-06 1.4E-10 77.4 3.2 47 86-132 48-95 (297)
32 3mbr_X Glutamine cyclotransfer 97.9 0.00087 3E-08 60.2 17.7 120 215-362 15-136 (243)
33 1rwi_B Serine/threonine-protei 97.7 0.0052 1.8E-07 55.4 21.0 179 148-363 45-226 (270)
34 3vgz_A Uncharacterized protein 97.7 0.022 7.4E-07 53.3 25.6 208 148-394 68-291 (353)
35 1ri6_A Putative isomerase YBHE 97.7 0.0028 9.6E-08 59.1 19.1 257 140-434 50-330 (343)
36 3nol_A Glutamine cyclotransfer 97.6 0.0024 8.3E-08 57.9 16.6 122 213-363 35-159 (262)
37 1q7f_A NHL, brain tumor CG1071 97.6 0.04 1.4E-06 50.0 26.8 223 148-412 50-280 (286)
38 3hfq_A Uncharacterized protein 97.5 0.0018 6E-08 61.1 15.1 189 150-366 19-227 (347)
39 3jrp_A Fusion protein of prote 97.4 0.004 1.4E-07 58.8 15.7 241 140-423 24-297 (379)
40 2z2n_A Virginiamycin B lyase; 97.4 0.062 2.1E-06 48.7 23.4 203 148-394 77-284 (299)
41 2ovr_B FBW7, F-BOX/WD repeat p 97.4 0.038 1.3E-06 53.9 23.1 196 182-413 246-443 (445)
42 3vgz_A Uncharacterized protein 97.3 0.029 9.9E-07 52.4 20.9 182 184-394 52-250 (353)
43 1l0q_A Surface layer protein; 97.3 0.0039 1.3E-07 59.6 15.0 179 147-365 10-195 (391)
44 1p22_A F-BOX/WD-repeat protein 97.3 0.012 4E-07 57.5 18.2 226 146-424 190-426 (435)
45 2iwa_A Glutamine cyclotransfer 97.3 0.017 5.9E-07 52.6 17.5 113 222-362 24-138 (266)
46 3bws_A Protein LP49; two-domai 97.3 0.016 5.5E-07 56.1 18.7 215 150-411 102-333 (433)
47 1l0q_A Surface layer protein; 97.2 0.0055 1.9E-07 58.6 14.5 170 186-395 3-178 (391)
48 1gxr_A ESG1, transducin-like e 97.2 0.021 7.3E-07 52.7 17.9 185 184-414 108-298 (337)
49 3scy_A Hypothetical bacterial 97.2 0.018 6.1E-07 54.5 17.7 237 151-423 31-302 (361)
50 4gqb_B Methylosome protein 50; 97.2 0.011 3.7E-07 56.1 16.0 228 142-412 96-331 (344)
51 4g56_B MGC81050 protein; prote 97.2 0.0068 2.3E-07 57.7 14.4 189 184-415 150-346 (357)
52 2z2n_A Virginiamycin B lyase; 97.1 0.14 4.7E-06 46.3 25.4 178 148-365 35-218 (299)
53 4ery_A WD repeat-containing pr 97.1 0.12 4.1E-06 47.4 22.6 225 140-411 36-267 (312)
54 1ri6_A Putative isomerase YBHE 97.1 0.043 1.5E-06 50.8 19.5 246 141-422 6-272 (343)
55 3nok_A Glutaminyl cyclase; bet 97.1 0.02 6.8E-07 51.9 16.1 109 223-363 59-168 (268)
56 3bws_A Protein LP49; two-domai 97.1 0.041 1.4E-06 53.1 19.9 151 187-365 91-249 (433)
57 3v9f_A Two-component system se 97.1 0.032 1.1E-06 59.2 20.4 233 149-432 383-632 (781)
58 2qc5_A Streptogramin B lactona 97.1 0.16 5.3E-06 46.0 23.5 179 148-365 40-223 (300)
59 3v7d_B Cell division control p 97.1 0.16 5.5E-06 49.5 23.9 184 184-410 279-463 (464)
60 1npe_A Nidogen, entactin; glyc 97.1 0.16 5.6E-06 45.6 23.1 186 184-415 47-239 (267)
61 3jrp_A Fusion protein of prote 97.0 0.012 4E-07 55.6 14.8 194 184-415 22-243 (379)
62 1k8k_C P40, ARP2/3 complex 41 97.0 0.042 1.4E-06 51.6 18.6 241 140-423 21-285 (372)
63 3hfq_A Uncharacterized protein 97.0 0.0075 2.6E-07 56.7 13.1 194 198-419 19-225 (347)
64 1ijq_A LDL receptor, low-densi 97.0 0.23 7.9E-06 46.2 24.0 207 140-393 2-225 (316)
65 4a2l_A BT_4663, two-component 97.0 0.11 3.9E-06 54.9 23.4 229 149-428 377-631 (795)
66 1gxr_A ESG1, transducin-like e 97.0 0.064 2.2E-06 49.4 19.1 187 140-363 110-300 (337)
67 2p4o_A Hypothetical protein; p 97.0 0.19 6.6E-06 46.3 22.3 182 147-365 51-247 (306)
68 3e5z_A Putative gluconolactona 96.9 0.2 6.9E-06 45.6 22.0 221 145-416 46-288 (296)
69 1pjx_A Dfpase, DIISOPROPYLFLUO 96.9 0.027 9.3E-07 51.8 15.8 187 147-361 44-258 (314)
70 1q7f_A NHL, brain tumor CG1071 96.9 0.15 5.1E-06 46.1 20.7 177 184-394 40-225 (286)
71 1rwi_B Serine/threonine-protei 96.9 0.043 1.5E-06 49.2 16.7 181 142-360 80-265 (270)
72 3jro_A Fusion protein of prote 96.9 0.023 7.9E-07 60.0 16.7 243 140-424 22-296 (753)
73 3v9f_A Two-component system se 96.9 0.051 1.7E-06 57.6 19.4 178 149-366 427-618 (781)
74 3g4e_A Regucalcin; six bladed 96.9 0.033 1.1E-06 51.3 16.0 212 146-395 32-262 (297)
75 3ow8_A WD repeat-containing pr 96.8 0.11 3.7E-06 48.4 19.3 184 141-363 94-283 (321)
76 1k8k_C P40, ARP2/3 complex 41 96.8 0.13 4.5E-06 48.1 20.0 196 141-368 66-285 (372)
77 3v65_B Low-density lipoprotein 96.8 0.34 1.2E-05 46.5 23.2 207 139-393 87-305 (386)
78 3u4y_A Uncharacterized protein 96.8 0.059 2E-06 49.9 17.3 180 147-362 18-210 (331)
79 2vdu_B TRNA (guanine-N(7)-)-me 96.8 0.22 7.4E-06 48.6 22.1 214 184-418 160-397 (450)
80 4a2l_A BT_4663, two-component 96.8 0.056 1.9E-06 57.3 18.8 179 148-366 426-621 (795)
81 2qc5_A Streptogramin B lactona 96.8 0.25 8.5E-06 44.6 21.0 147 184-365 30-181 (300)
82 3no2_A Uncharacterized protein 96.7 0.28 9.5E-06 44.7 20.9 207 142-393 8-230 (276)
83 3u4y_A Uncharacterized protein 96.7 0.076 2.6E-06 49.1 17.3 231 141-411 53-303 (331)
84 2pm7_B Protein transport prote 96.6 0.26 9E-06 45.0 20.4 201 185-423 67-295 (297)
85 4ery_A WD repeat-containing pr 96.6 0.4 1.4E-05 43.8 22.2 188 140-362 78-271 (312)
86 1kb0_A Quinohemoprotein alcoho 96.6 0.89 3E-05 47.2 26.6 209 140-361 78-348 (677)
87 3mkq_A Coatomer beta'-subunit; 96.6 0.082 2.8E-06 55.7 18.3 189 138-362 24-220 (814)
88 1r5m_A SIR4-interacting protei 96.5 0.082 2.8E-06 50.4 16.6 143 184-361 217-363 (425)
89 3no2_A Uncharacterized protein 96.5 0.18 6.3E-06 45.9 17.9 172 184-395 4-184 (276)
90 3scy_A Hypothetical bacterial 96.5 0.38 1.3E-05 45.1 20.6 116 276-421 221-346 (361)
91 2pm7_B Protein transport prote 96.4 0.097 3.3E-06 47.9 15.9 205 184-418 20-244 (297)
92 2ojh_A Uncharacterized protein 96.4 0.19 6.4E-06 44.9 17.5 185 149-367 22-214 (297)
93 3vl1_A 26S proteasome regulato 96.4 0.31 1E-05 46.6 19.9 161 184-362 108-281 (420)
94 3dwl_C Actin-related protein 2 96.4 0.055 1.9E-06 51.1 14.3 183 147-361 31-238 (377)
95 2ad6_A Methanol dehydrogenase 96.4 1 3.5E-05 45.7 25.5 212 140-364 63-342 (571)
96 4aez_A CDC20, WD repeat-contai 96.3 0.47 1.6E-05 45.3 20.9 232 141-419 148-387 (401)
97 1nir_A Nitrite reductase; hemo 96.3 0.13 4.3E-06 52.1 17.1 237 141-424 150-417 (543)
98 2hqs_A Protein TOLB; TOLB, PAL 96.3 0.32 1.1E-05 47.1 19.5 227 149-422 159-395 (415)
99 4aez_A CDC20, WD repeat-contai 96.3 0.27 9.3E-06 47.0 18.8 187 142-364 106-298 (401)
100 1jmx_B Amine dehydrogenase; ox 96.3 0.15 5E-06 47.3 16.3 149 144-307 16-179 (349)
101 2aq5_A Coronin-1A; WD40 repeat 96.3 0.14 4.8E-06 49.0 16.5 150 184-361 93-256 (402)
102 3bg1_A Protein SEC13 homolog; 96.2 0.087 3E-06 48.8 14.5 241 140-426 26-306 (316)
103 3c5m_A Oligogalacturonate lyas 96.2 0.36 1.2E-05 45.5 19.3 196 196-421 167-391 (396)
104 1r5m_A SIR4-interacting protei 96.2 0.19 6.6E-06 47.7 17.3 186 140-363 121-323 (425)
105 1got_B GT-beta; complex (GTP-b 96.2 0.47 1.6E-05 44.2 19.4 134 197-361 164-303 (340)
106 2fp8_A Strictosidine synthase; 96.2 0.11 3.6E-06 48.4 14.7 196 140-360 92-314 (322)
107 3l2o_B F-box only protein 4; s 96.2 0.002 7E-08 58.9 2.6 46 89-134 5-50 (312)
108 3m0c_C LDL receptor, low-densi 96.2 0.99 3.4E-05 47.7 23.5 210 139-394 395-620 (791)
109 3p5b_L Low density lipoprotein 96.1 1 3.5E-05 43.4 22.8 209 139-393 83-307 (400)
110 2ghs_A AGR_C_1268P; regucalcin 96.1 0.41 1.4E-05 44.5 18.7 185 147-365 69-266 (326)
111 3ei3_B DNA damage-binding prot 96.1 0.24 8.1E-06 46.8 17.3 143 186-359 87-236 (383)
112 1vyh_C Platelet-activating fac 96.1 0.44 1.5E-05 45.9 19.4 199 140-361 121-329 (410)
113 1w6s_A Methanol dehydrogenase 96.1 1.5 5E-05 44.8 24.0 119 181-310 59-200 (599)
114 3g4e_A Regucalcin; six bladed 96.1 0.09 3.1E-06 48.3 13.6 148 184-362 24-185 (297)
115 3jro_A Fusion protein of prote 96.1 0.096 3.3E-06 55.2 15.4 192 185-414 21-240 (753)
116 2dg1_A DRP35, lactonase; beta 96.1 0.26 8.9E-06 45.6 16.8 191 147-365 64-269 (333)
117 3v64_C Agrin; beta propeller, 96.1 1 3.4E-05 42.5 24.9 205 139-393 44-262 (349)
118 1got_B GT-beta; complex (GTP-b 96.0 0.25 8.5E-06 46.1 16.6 186 140-362 68-260 (340)
119 1pjx_A Dfpase, DIISOPROPYLFLUO 96.0 0.15 5E-06 46.7 14.8 186 142-360 85-300 (314)
120 1w6s_A Methanol dehydrogenase 96.0 1.6 5.4E-05 44.6 23.5 209 140-361 63-344 (599)
121 3fvz_A Peptidyl-glycine alpha- 96.0 0.98 3.3E-05 41.9 25.0 177 197-395 69-259 (329)
122 3ow8_A WD repeat-containing pr 96.0 0.27 9.4E-06 45.6 16.6 147 184-363 91-241 (321)
123 2hqs_A Protein TOLB; TOLB, PAL 96.0 0.32 1.1E-05 47.1 17.6 184 150-367 204-395 (415)
124 3dwl_C Actin-related protein 2 96.0 0.058 2E-06 50.9 12.1 150 184-360 22-178 (377)
125 4aow_A Guanine nucleotide-bind 96.0 0.38 1.3E-05 44.2 17.5 103 229-362 185-289 (340)
126 1npe_A Nidogen, entactin; glyc 95.9 0.88 3E-05 40.7 22.4 185 140-363 48-242 (267)
127 2ojh_A Uncharacterized protein 95.9 0.2 6.7E-06 44.8 14.9 197 185-421 10-213 (297)
128 3azo_A Aminopeptidase; POP fam 95.8 0.88 3E-05 46.6 21.3 248 148-420 101-375 (662)
129 2ynn_A Coatomer subunit beta'; 95.8 0.57 2E-05 42.8 17.9 187 138-362 24-220 (304)
130 1kv9_A Type II quinohemoprotei 95.8 2.2 7.5E-05 44.1 26.1 117 140-260 67-195 (668)
131 2pm9_A Protein WEB1, protein t 95.8 0.78 2.7E-05 43.5 19.3 192 185-412 126-337 (416)
132 2pbi_B Guanine nucleotide-bind 95.8 0.76 2.6E-05 43.1 18.9 186 140-362 77-274 (354)
133 4g56_B MGC81050 protein; prote 95.7 0.11 3.8E-06 49.1 12.9 146 184-361 105-260 (357)
134 1kb0_A Quinohemoprotein alcoho 95.7 2.3 7.9E-05 44.0 25.3 117 181-309 74-207 (677)
135 1pex_A Collagenase-3, MMP-13; 95.7 0.83 2.8E-05 39.7 17.3 154 179-364 28-197 (207)
136 3fm0_A Protein CIAO1; WDR39,SG 95.7 0.11 3.7E-06 48.8 12.7 157 184-368 27-190 (345)
137 2pm9_A Protein WEB1, protein t 95.7 0.6 2.1E-05 44.3 18.2 147 185-360 178-338 (416)
138 2ast_B S-phase kinase-associat 95.7 0.0033 1.1E-07 59.2 1.9 44 85-128 5-48 (336)
139 3pe7_A Oligogalacturonate lyas 95.7 0.45 1.6E-05 44.8 17.1 202 197-417 168-387 (388)
140 2z3z_A Dipeptidyl aminopeptida 95.7 1.4 4.8E-05 45.4 22.2 243 149-421 101-398 (706)
141 3zwl_B Eukaryotic translation 95.7 0.9 3.1E-05 41.9 18.9 192 141-365 46-255 (369)
142 3lrv_A PRE-mRNA-splicing facto 95.6 1.4 4.8E-05 40.8 23.2 157 228-419 138-299 (343)
143 3k26_A Polycomb protein EED; W 95.6 0.43 1.5E-05 44.2 16.4 150 139-305 34-194 (366)
144 3vl1_A 26S proteasome regulato 95.6 1.7 5.7E-05 41.3 25.5 224 141-412 111-365 (420)
145 1yiq_A Quinohemoprotein alcoho 95.5 2.7 9.3E-05 43.6 24.9 117 140-260 71-200 (689)
146 1qhu_A Protein (hemopexin); be 95.5 0.46 1.6E-05 46.7 16.5 177 184-413 158-384 (460)
147 2hes_X YDR267CP; beta-propelle 95.5 0.5 1.7E-05 43.8 16.4 200 142-369 27-246 (330)
148 2aq5_A Coronin-1A; WD40 repeat 95.5 1.7 5.7E-05 41.3 20.4 141 196-363 56-211 (402)
149 2hes_X YDR267CP; beta-propelle 95.4 0.11 3.7E-06 48.5 11.5 195 184-411 118-327 (330)
150 2ad6_A Methanol dehydrogenase 95.4 2.6 8.8E-05 42.7 25.9 118 181-309 59-193 (571)
151 3hrp_A Uncharacterized protein 95.4 2 6.9E-05 41.4 22.0 194 149-366 152-361 (409)
152 1sq9_A Antiviral protein SKI8; 95.4 0.77 2.6E-05 43.2 17.7 111 228-362 197-325 (397)
153 3fvz_A Peptidyl-glycine alpha- 95.4 1.7 5.7E-05 40.3 20.3 156 184-359 154-322 (329)
154 2dg1_A DRP35, lactonase; beta 95.4 0.13 4.6E-06 47.6 11.9 153 184-359 55-213 (333)
155 3i2n_A WD repeat-containing pr 95.4 0.29 1E-05 45.3 14.3 151 186-364 32-204 (357)
156 1yiq_A Quinohemoprotein alcoho 95.4 3.1 0.00011 43.2 25.3 117 181-309 67-200 (689)
157 3zwl_B Eukaryotic translation 95.3 0.62 2.1E-05 43.1 16.5 148 140-307 87-253 (369)
158 1vyh_C Platelet-activating fac 95.3 0.52 1.8E-05 45.3 16.2 147 184-364 119-270 (410)
159 2fp8_A Strictosidine synthase; 95.3 1.1 3.8E-05 41.3 17.9 221 141-394 32-301 (322)
160 1erj_A Transcriptional repress 95.2 0.91 3.1E-05 43.2 17.6 228 140-411 136-388 (393)
161 1sq9_A Antiviral protein SKI8; 95.2 0.75 2.6E-05 43.3 16.8 147 186-361 82-269 (397)
162 3fm0_A Protein CIAO1; WDR39,SG 95.2 0.66 2.3E-05 43.3 16.1 188 141-357 30-223 (345)
163 1yfq_A Cell cycle arrest prote 95.2 1.6 5.6E-05 39.8 18.8 185 140-360 24-226 (342)
164 1pby_B Quinohemoprotein amine 95.1 1.7 5.7E-05 39.6 18.7 113 141-258 3-128 (337)
165 4a11_B DNA excision repair pro 95.1 1.5 5.2E-05 41.1 18.8 234 141-413 114-366 (408)
166 2ynn_A Coatomer subunit beta'; 95.0 0.47 1.6E-05 43.4 14.3 185 140-364 68-264 (304)
167 4gqb_B Methylosome protein 50; 95.0 0.33 1.1E-05 45.7 13.4 137 197-361 103-248 (344)
168 1qks_A Cytochrome CD1 nitrite 95.0 1.4 4.7E-05 44.7 18.7 240 140-424 167-436 (567)
169 3ott_A Two-component system se 94.9 1.6 5.4E-05 45.8 19.7 107 228-366 482-593 (758)
170 3tc9_A Hypothetical hydrolase; 94.9 0.85 2.9E-05 44.4 16.4 201 140-366 150-377 (430)
171 3mkq_A Coatomer beta'-subunit; 94.8 0.34 1.2E-05 50.9 14.4 187 140-363 68-263 (814)
172 3bg1_A Protein SEC13 homolog; 94.8 0.26 8.8E-06 45.5 12.0 169 184-369 24-209 (316)
173 1n7d_A LDL receptor, low-densi 94.8 0.3 1E-05 51.0 13.6 200 149-393 386-601 (699)
174 1erj_A Transcriptional repress 94.8 1 3.4E-05 42.9 16.5 105 228-363 134-242 (393)
175 3azo_A Aminopeptidase; POP fam 94.7 1.2 4.2E-05 45.5 17.9 186 149-366 161-376 (662)
176 2p4o_A Hypothetical protein; p 94.7 2.6 8.7E-05 38.5 22.0 152 184-359 42-198 (306)
177 3i2n_A WD repeat-containing pr 94.6 1.9 6.6E-05 39.5 17.7 174 148-359 43-243 (357)
178 3v65_B Low-density lipoprotein 94.6 3.2 0.00011 39.5 21.9 181 141-361 129-320 (386)
179 2pbi_B Guanine nucleotide-bind 94.6 2 6.9E-05 40.1 17.9 134 197-361 176-317 (354)
180 3ei3_B DNA damage-binding prot 94.6 1.3 4.3E-05 41.7 16.5 110 230-365 87-200 (383)
181 1ijq_A LDL receptor, low-densi 94.6 2.8 9.7E-05 38.6 21.3 147 183-361 87-240 (316)
182 3e5z_A Putative gluconolactona 94.5 1.1 3.9E-05 40.4 15.6 174 149-361 90-288 (296)
183 1pgu_A Actin interacting prote 94.5 2.2 7.7E-05 42.6 19.2 142 229-412 456-614 (615)
184 3b7f_A Glycosyl hydrolase, BNR 94.5 2.3 8E-05 40.5 18.4 214 185-425 23-274 (394)
185 2ecf_A Dipeptidyl peptidase IV 94.4 2.4 8.3E-05 43.9 19.6 203 140-366 121-375 (741)
186 3hrp_A Uncharacterized protein 94.4 3.7 0.00013 39.5 19.5 149 183-360 140-299 (409)
187 3dr2_A Exported gluconolactona 94.3 1.1 3.7E-05 41.0 15.0 179 184-393 96-295 (305)
188 1yfq_A Cell cycle arrest prote 94.3 2 6.7E-05 39.3 16.9 216 141-396 71-313 (342)
189 3odt_A Protein DOA1; ubiquitin 94.2 2.9 0.0001 37.4 20.2 183 141-362 31-217 (313)
190 3k26_A Polycomb protein EED; W 94.1 1.3 4.3E-05 40.9 15.2 102 140-256 86-194 (366)
191 4gga_A P55CDC, cell division c 94.1 0.64 2.2E-05 44.7 13.5 142 186-360 117-262 (420)
192 3f3f_A Nucleoporin SEH1; struc 94.1 3.3 0.00011 37.4 18.6 189 140-360 24-250 (351)
193 2ghs_A AGR_C_1268P; regucalcin 94.0 3.7 0.00013 37.9 19.0 143 184-358 60-209 (326)
194 3hxj_A Pyrrolo-quinoline quino 94.0 3.1 0.00011 37.8 17.4 196 140-393 108-312 (330)
195 2vdu_B TRNA (guanine-N(7)-)-me 93.8 5.1 0.00017 38.6 20.6 64 185-257 210-274 (450)
196 1pex_A Collagenase-3, MMP-13; 93.8 3 0.0001 36.0 15.9 152 223-416 28-194 (207)
197 2xbg_A YCF48-like protein; pho 93.7 4.2 0.00015 37.6 22.5 172 184-394 46-223 (327)
198 3f3f_A Nucleoporin SEH1; struc 93.7 3.8 0.00013 37.0 19.5 194 184-412 22-249 (351)
199 1nir_A Nitrite reductase; hemo 93.7 1.3 4.4E-05 44.6 15.2 196 140-371 191-419 (543)
200 2p1m_B Transport inhibitor res 93.7 0.022 7.6E-07 58.0 2.0 37 86-122 3-40 (594)
201 3ott_A Two-component system se 93.6 4.1 0.00014 42.6 19.6 149 184-367 73-228 (758)
202 4e54_B DNA damage-binding prot 93.6 0.7 2.4E-05 44.7 12.8 108 229-361 132-242 (435)
203 1itv_A MMP9; adaptive molecula 93.6 3.1 0.00011 35.6 16.5 147 179-362 11-177 (195)
204 4e54_B DNA damage-binding prot 93.6 4.2 0.00014 39.1 18.3 186 142-361 135-329 (435)
205 3oyo_A Hemopexin fold protein 93.5 2.8 9.7E-05 36.8 15.3 146 183-359 12-198 (225)
206 4h5i_A Guanine nucleotide-exch 93.5 3.8 0.00013 38.4 17.5 190 184-410 144-341 (365)
207 1qhu_A Protein (hemopexin); be 93.5 6 0.00021 38.7 20.4 213 148-412 166-436 (460)
208 4a11_B DNA excision repair pro 93.5 1.3 4.6E-05 41.5 14.3 150 184-362 111-279 (408)
209 3v64_C Agrin; beta propeller, 93.5 5 0.00017 37.6 23.8 182 140-361 85-277 (349)
210 1flg_A Protein (quinoprotein e 93.3 7.6 0.00026 39.3 22.6 115 141-259 70-200 (582)
211 3odt_A Protein DOA1; ubiquitin 93.3 4.2 0.00014 36.3 19.6 107 228-365 154-261 (313)
212 1kv9_A Type II quinohemoprotei 93.3 1.6 5.6E-05 45.1 15.5 116 223-365 61-195 (668)
213 3ba0_A Macrophage metalloelast 93.2 4.9 0.00017 38.1 17.4 151 179-364 185-355 (365)
214 3mmy_A MRNA export factor; mRN 93.2 4.3 0.00015 37.2 17.1 199 140-363 99-308 (368)
215 2z3z_A Dipeptidyl aminopeptida 93.1 8.9 0.00031 39.3 23.5 149 196-366 234-398 (706)
216 4hw6_A Hypothetical protein, I 93.0 2.8 9.6E-05 40.8 16.0 199 141-366 154-380 (433)
217 3sfz_A APAF-1, apoptotic pepti 93.0 0.94 3.2E-05 50.3 14.1 186 141-362 975-1161(1249)
218 1pgu_A Actin interacting prote 92.9 3.9 0.00013 40.8 17.5 108 231-365 175-289 (615)
219 3m0c_C LDL receptor, low-densi 92.8 10 0.00035 40.0 20.8 146 183-360 481-633 (791)
220 3mmy_A MRNA export factor; mRN 92.8 3.4 0.00012 37.9 15.7 149 229-420 54-207 (368)
221 3pe7_A Oligogalacturonate lyas 92.5 3.3 0.00011 38.7 15.4 164 182-367 44-233 (388)
222 3sfz_A APAF-1, apoptotic pepti 92.5 0.48 1.6E-05 52.6 10.7 187 142-362 1018-1210(1249)
223 3lrv_A PRE-mRNA-splicing facto 92.4 5.2 0.00018 36.8 16.5 151 184-364 138-299 (343)
224 3b7f_A Glycosyl hydrolase, BNR 92.4 7.5 0.00026 36.8 23.8 236 150-425 82-384 (394)
225 2ymu_A WD-40 repeat protein; u 92.4 4.4 0.00015 40.2 17.0 141 184-361 355-500 (577)
226 1jmx_B Amine dehydrogenase; ox 92.3 1.6 5.6E-05 39.9 12.8 68 227-307 9-78 (349)
227 2ecf_A Dipeptidyl peptidase IV 92.2 5.4 0.00018 41.2 17.9 70 182-262 117-189 (741)
228 3hxj_A Pyrrolo-quinoline quino 92.2 1.3 4.5E-05 40.4 11.9 136 184-365 70-211 (330)
229 2xyi_A Probable histone-bindin 92.1 3.6 0.00012 39.5 15.4 142 187-359 196-353 (430)
230 3c5m_A Oligogalacturonate lyas 92.0 2.7 9.4E-05 39.2 14.1 151 149-310 168-336 (396)
231 3iz6_a 40S ribosomal protein R 92.0 8.2 0.00028 36.2 20.3 189 140-364 79-285 (380)
232 4gga_A P55CDC, cell division c 91.9 3.4 0.00012 39.4 15.0 94 245-361 125-220 (420)
233 1n7d_A LDL receptor, low-densi 91.9 2.5 8.5E-05 44.0 14.7 151 183-365 463-620 (699)
234 1pby_B Quinohemoprotein amine 91.9 3 0.0001 37.8 13.9 102 245-364 11-129 (337)
235 2xbg_A YCF48-like protein; pho 91.6 8.2 0.00028 35.6 24.5 213 157-421 64-286 (327)
236 1flg_A Protein (quinoprotein e 91.6 13 0.00043 37.7 24.2 116 181-308 65-200 (582)
237 4aow_A Guanine nucleotide-bind 91.6 7.6 0.00026 35.1 18.4 148 184-362 97-249 (340)
238 2bkl_A Prolyl endopeptidase; m 91.5 14 0.00048 38.0 24.2 221 150-395 95-338 (695)
239 3frx_A Guanine nucleotide-bind 91.4 7.8 0.00027 35.3 16.3 142 140-305 78-229 (319)
240 2ymu_A WD-40 repeat protein; u 91.4 4.4 0.00015 40.2 15.6 171 184-396 396-570 (577)
241 3iz6_a 40S ribosomal protein R 91.3 9.6 0.00033 35.7 18.9 188 142-360 173-376 (380)
242 4a0p_A LRP6, LRP-6, low-densit 91.3 14 0.00049 37.6 26.3 208 138-393 5-224 (628)
243 3oyo_A Hemopexin fold protein 91.2 2.5 8.6E-05 37.1 11.8 63 339-413 127-197 (225)
244 2xyi_A Probable histone-bindin 91.1 2 6.8E-05 41.3 12.3 102 231-359 196-309 (430)
245 1hxn_A Hemopexin, HPX; heme, b 91.1 6.8 0.00023 34.1 14.4 146 227-413 27-196 (219)
246 3c7x_A Matrix metalloproteinas 91.0 6.8 0.00023 33.5 14.3 146 180-361 11-177 (196)
247 3p5b_L Low density lipoprotein 91.0 11 0.00038 35.9 19.9 146 183-360 169-321 (400)
248 3dr2_A Exported gluconolactona 90.7 4.2 0.00014 36.9 13.5 148 149-310 107-274 (305)
249 3dm0_A Maltose-binding peripla 90.5 12 0.0004 38.4 18.3 147 184-363 483-636 (694)
250 3c7x_A Matrix metalloproteinas 90.5 2.4 8.3E-05 36.3 10.9 147 223-415 10-176 (196)
251 3o4h_A Acylamino-acid-releasin 90.4 1.9 6.5E-05 43.4 11.8 182 198-414 133-315 (582)
252 3sov_A LRP-6, low-density lipo 90.4 11 0.00037 34.8 20.7 204 139-393 4-225 (318)
253 4h5i_A Guanine nucleotide-exch 90.4 8.1 0.00028 36.1 15.6 180 149-359 157-343 (365)
254 3ba0_A Macrophage metalloelast 90.4 8.1 0.00028 36.6 15.4 151 223-419 185-355 (365)
255 3gre_A Serine/threonine-protei 90.4 7.8 0.00027 36.8 15.8 108 228-362 181-295 (437)
256 4ggc_A P55CDC, cell division c 90.3 7.5 0.00026 34.7 14.9 95 245-362 45-141 (318)
257 3lp9_A LS-24; SEED albumin, pl 90.3 2.5 8.5E-05 37.2 10.9 148 183-360 14-202 (227)
258 1qks_A Cytochrome CD1 nitrite 90.1 7.9 0.00027 39.0 16.0 198 139-370 208-437 (567)
259 1su3_A Interstitial collagenas 90.1 8.6 0.0003 37.5 15.7 152 179-365 267-438 (450)
260 3sov_A LRP-6, low-density lipo 89.9 12 0.00041 34.5 21.1 146 183-362 89-241 (318)
261 4ggc_A P55CDC, cell division c 89.8 4.9 0.00017 36.0 13.2 89 187-286 38-128 (318)
262 2hz6_A Endoplasmic reticulum t 89.8 0.15 5.2E-06 48.6 2.8 142 181-364 6-156 (369)
263 1itv_A MMP9; adaptive molecula 89.5 6 0.00021 33.8 12.5 145 223-416 11-176 (195)
264 2xdw_A Prolyl endopeptidase; a 89.2 22 0.00074 36.6 21.9 149 197-366 208-376 (710)
265 3frx_A Guanine nucleotide-bind 89.1 11 0.00039 34.1 15.2 143 184-361 76-229 (319)
266 2gop_A Trilobed protease; beta 89.0 11 0.00038 34.4 15.2 101 197-310 152-258 (347)
267 2p9w_A MAL S 1 allergenic prot 88.8 15 0.00051 34.2 20.3 229 140-396 25-305 (334)
268 3ju4_A Endo-N-acetylneuraminid 88.8 13 0.00044 35.4 14.6 126 207-347 270-405 (670)
269 3tc9_A Hypothetical hydrolase; 88.7 2.2 7.7E-05 41.4 10.4 132 228-393 149-288 (430)
270 2ece_A 462AA long hypothetical 88.7 11 0.00038 36.7 15.0 116 184-305 95-239 (462)
271 3sjl_D Methylamine dehydrogena 88.6 17 0.00058 34.6 17.6 109 137-257 42-172 (386)
272 3ogk_B Coronatine-insensitive 88.5 0.13 4.5E-06 52.2 1.4 34 90-123 14-48 (592)
273 2mad_H Methylamine dehydrogena 88.4 17 0.00057 34.3 25.1 80 339-434 278-369 (373)
274 1su3_A Interstitial collagenas 87.9 6.9 0.00024 38.2 13.2 61 339-418 367-436 (450)
275 3dm0_A Maltose-binding peripla 87.9 26 0.00088 35.8 19.6 148 184-362 441-595 (694)
276 1nr0_A Actin interacting prote 87.5 25 0.00087 35.3 18.0 146 187-362 162-316 (611)
277 1hxn_A Hemopexin, HPX; heme, b 87.4 14 0.00047 32.1 14.6 94 183-303 27-144 (219)
278 3gre_A Serine/threonine-protei 86.8 15 0.00052 34.7 15.1 161 185-361 182-361 (437)
279 1k32_A Tricorn protease; prote 86.6 24 0.00083 38.2 18.1 140 196-366 316-468 (1045)
280 3o4h_A Acylamino-acid-releasin 86.5 13 0.00045 37.0 15.0 139 197-365 90-233 (582)
281 2oiz_A Aromatic amine dehydrog 86.0 22 0.00075 33.1 18.1 80 339-434 265-355 (361)
282 3kya_A Putative phosphatase; s 85.4 30 0.001 34.1 16.5 206 142-365 154-415 (496)
283 4hw6_A Hypothetical protein, I 85.1 8 0.00027 37.5 12.1 131 229-393 153-291 (433)
284 2hz6_A Endoplasmic reticulum t 84.9 0.41 1.4E-05 45.5 2.6 107 225-364 6-118 (369)
285 2oit_A Nucleoporin 214KDA; NH2 84.8 18 0.00061 34.8 14.5 60 229-303 162-223 (434)
286 3iuj_A Prolyl endopeptidase; h 84.8 17 0.00057 37.4 15.1 147 196-368 258-414 (693)
287 4a0p_A LRP6, LRP-6, low-densit 84.6 37 0.0013 34.5 21.0 160 197-393 15-184 (628)
288 1gen_A Gelatinase A; hydrolase 84.6 19 0.00066 31.2 16.1 148 179-361 35-204 (218)
289 2qe8_A Uncharacterized protein 84.4 25 0.00085 32.3 16.3 123 228-365 27-161 (343)
290 2xdw_A Prolyl endopeptidase; a 84.1 22 0.00076 36.5 15.7 147 148-310 258-423 (710)
291 2gop_A Trilobed protease; beta 83.5 26 0.00088 31.8 15.0 177 149-366 43-258 (347)
292 2cn3_A Xyloglucanase, beta-1,4 82.8 48 0.0016 34.4 27.6 248 142-420 38-343 (737)
293 2bkl_A Prolyl endopeptidase; m 82.6 9.2 0.00031 39.4 12.0 146 196-366 251-404 (695)
294 1yr2_A Prolyl oligopeptidase; 81.7 21 0.00071 37.0 14.4 147 195-367 292-449 (741)
295 2xzm_R RACK1; ribosome, transl 81.5 31 0.0011 31.4 18.7 62 228-304 87-150 (343)
296 1yr2_A Prolyl oligopeptidase; 79.5 60 0.0021 33.4 20.5 185 184-395 173-382 (741)
297 3sjl_D Methylamine dehydrogena 78.4 47 0.0016 31.5 16.3 65 339-416 291-365 (386)
298 3a0f_A Xyloglucanase; beta-pro 78.4 68 0.0023 33.4 24.2 258 141-420 35-351 (763)
299 1fwx_A Nitrous oxide reductase 78.3 22 0.00074 35.9 12.4 222 184-434 101-390 (595)
300 1nr0_A Actin interacting prote 76.5 65 0.0022 32.2 20.0 152 184-365 201-361 (611)
301 1xfd_A DIP, dipeptidyl aminope 76.2 64 0.0022 32.7 16.0 62 245-309 228-295 (723)
302 1xfd_A DIP, dipeptidyl aminope 76.0 33 0.0011 35.0 13.7 58 197-261 91-150 (723)
303 1jof_A Carboxy-CIS,CIS-muconat 75.9 49 0.0017 30.4 21.5 170 245-434 167-363 (365)
304 1fwx_A Nitrous oxide reductase 74.3 11 0.00039 38.0 9.1 179 244-435 253-452 (595)
305 3lp9_A LS-24; SEED albumin, pl 74.2 24 0.00082 30.8 10.3 101 183-304 71-202 (227)
306 2qe8_A Uncharacterized protein 73.2 56 0.0019 29.8 21.3 52 338-394 257-309 (343)
307 3s94_A LRP-6, low-density lipo 70.7 94 0.0032 31.4 24.1 170 184-393 360-538 (619)
308 1k32_A Tricorn protease; prote 70.1 1.2E+02 0.0042 32.5 21.8 108 149-261 33-150 (1045)
309 3vu4_A KMHSV2; beta-propeller 69.3 69 0.0023 29.3 19.1 62 339-412 206-271 (355)
310 2xe4_A Oligopeptidase B; hydro 69.3 89 0.003 32.4 15.1 108 186-301 284-398 (751)
311 2mad_H Methylamine dehydrogena 68.7 76 0.0026 29.6 25.2 96 150-257 48-159 (373)
312 1sqj_A OXG-RCBH, oligoxylogluc 67.1 1.3E+02 0.0043 31.5 26.2 217 185-425 28-280 (789)
313 1ck7_A Protein (gelatinase A); 65.9 42 0.0015 34.1 11.2 148 179-361 448-617 (631)
314 2xzm_R RACK1; ribosome, transl 65.8 77 0.0026 28.6 18.1 21 339-359 224-244 (343)
315 1gen_A Gelatinase A; hydrolase 65.5 66 0.0022 27.7 16.5 148 223-415 35-203 (218)
316 3kya_A Putative phosphatase; s 65.3 51 0.0018 32.4 11.5 107 228-358 151-277 (496)
317 3vu4_A KMHSV2; beta-propeller 64.5 86 0.0029 28.6 21.0 64 276-360 206-272 (355)
318 1sqj_A OXG-RCBH, oligoxylogluc 64.4 1.4E+02 0.0048 31.1 25.9 263 142-421 30-340 (789)
319 1jof_A Carboxy-CIS,CIS-muconat 63.9 88 0.003 28.6 15.8 25 339-363 321-345 (365)
320 3ei3_A DNA damage-binding prot 63.8 1.6E+02 0.0054 32.4 16.2 108 243-372 862-970 (1158)
321 3iuj_A Prolyl endopeptidase; h 63.0 1.4E+02 0.0047 30.5 20.6 170 197-393 155-344 (693)
322 2j04_A TAU60, YPL007P, hypothe 62.8 1.3E+02 0.0045 30.2 16.5 110 228-361 96-213 (588)
323 2cn3_A Xyloglucanase, beta-1,4 62.2 1.5E+02 0.0051 30.6 26.4 222 185-425 36-294 (737)
324 3dw8_B Serine/threonine-protei 61.9 1E+02 0.0035 28.7 14.9 28 338-365 352-379 (447)
325 3qqz_A Putative uncharacterize 61.4 70 0.0024 28.3 10.8 106 268-395 27-141 (255)
326 3s94_A LRP-6, low-density lipo 60.6 1.5E+02 0.005 30.0 21.2 145 183-364 402-556 (619)
327 1ck7_A Protein (gelatinase A); 58.3 47 0.0016 33.8 9.9 151 223-415 448-616 (631)
328 3a0f_A Xyloglucanase; beta-pro 56.6 1.9E+02 0.0064 30.0 21.2 215 185-425 34-295 (763)
329 3c75_H MADH, methylamine dehyd 56.3 1.4E+02 0.0049 28.5 16.0 76 339-429 330-416 (426)
330 2xe4_A Oligopeptidase B; hydro 53.7 2E+02 0.007 29.6 15.3 116 184-310 330-465 (751)
331 3c75_H MADH, methylamine dehyd 52.8 65 0.0022 31.0 9.6 121 228-362 84-212 (426)
332 3ju4_A Endo-N-acetylneuraminid 52.2 1.6E+02 0.0056 28.0 11.8 128 253-397 268-408 (670)
333 2oit_A Nucleoporin 214KDA; NH2 48.6 66 0.0023 30.7 9.1 61 277-360 162-224 (434)
334 3dw8_B Serine/threonine-protei 47.7 1.7E+02 0.0059 27.0 14.4 20 339-359 188-207 (447)
335 4fj6_A Glycoside hydrolase fam 46.8 1.7E+02 0.0059 28.9 11.8 139 276-434 335-492 (523)
336 1z68_A Fibroblast activation p 45.1 2.5E+02 0.0087 28.2 16.7 54 149-213 90-146 (719)
337 3ei3_A DNA damage-binding prot 39.0 3.5E+02 0.012 29.7 13.8 161 245-434 807-977 (1158)
338 3amr_A 3-phytase; beta-propell 36.7 2.6E+02 0.009 25.9 16.4 93 245-358 99-209 (355)
339 3sre_A PON1, serum paraoxonase 36.1 2.7E+02 0.0091 25.8 11.8 143 196-359 82-252 (355)
340 2oaj_A Protein SNI1; WD40 repe 36.0 4.1E+02 0.014 28.0 18.5 26 339-364 222-247 (902)
341 2oaj_A Protein SNI1; WD40 repe 35.0 4.2E+02 0.015 27.9 18.7 150 184-363 28-186 (902)
342 2oiz_A Aromatic amine dehydrog 34.5 2.7E+02 0.0092 25.4 17.1 73 276-367 265-342 (361)
343 2be1_A Serine/threonine-protei 32.6 54 0.0018 30.5 5.2 27 338-364 54-81 (339)
344 3k6s_A Integrin alpha-X; cell 31.7 3.2E+02 0.011 29.8 11.9 95 340-435 398-509 (1095)
345 2w18_A PALB2, fancn, partner a 31.2 3.2E+02 0.011 25.3 21.8 154 228-410 192-355 (356)
346 2ece_A 462AA long hypothetical 30.9 3.7E+02 0.013 25.9 16.6 56 339-394 331-400 (462)
347 2kwv_A RAD30 homolog B, DNA po 28.7 26 0.0009 21.8 1.5 23 85-107 17-39 (48)
348 3q6k_A 43.2 kDa salivary prote 28.6 1.2E+02 0.004 28.7 6.9 64 293-365 122-197 (381)
349 4hvt_A Ritya.17583.B, post-pro 27.5 5.1E+02 0.018 26.5 12.5 147 149-313 269-439 (711)
350 3q6k_A 43.2 kDa salivary prote 27.1 3.9E+02 0.013 25.0 18.3 186 196-394 122-342 (381)
351 2ydt_A EXO-1,5-alpha-L-arabino 26.9 2.8E+02 0.0097 25.8 9.3 54 339-397 287-345 (367)
352 2be1_A Serine/threonine-protei 25.7 84 0.0029 29.1 5.2 109 183-309 9-138 (339)
353 1z68_A Fibroblast activation p 25.4 5.2E+02 0.018 25.8 13.1 121 184-310 263-402 (719)
354 3qqz_A Putative uncharacterize 25.2 3.4E+02 0.012 23.7 20.2 180 184-393 38-241 (255)
355 3k6s_A Integrin alpha-X; cell 25.2 6.9E+02 0.023 27.1 13.6 150 221-385 336-509 (1095)
356 4gq1_A NUP37; propeller, trans 24.2 3E+02 0.01 25.2 9.1 94 245-361 111-220 (393)
357 4hvt_A Ritya.17583.B, post-pro 23.7 6E+02 0.021 26.0 14.5 149 196-369 268-439 (711)
358 2p9w_A MAL S 1 allergenic prot 21.4 4.8E+02 0.016 23.9 21.5 153 185-360 25-216 (334)
359 2l9b_B MRNA 3'-END-processing 21.1 59 0.002 20.8 2.1 21 91-112 6-26 (53)
No 1
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=6.6e-45 Score=348.21 Aligned_cols=280 Identities=21% Similarity=0.321 Sum_probs=242.7
Q ss_pred HHHHhhcCcchHHhhhhcCccccEEEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCcc---
Q 043540 118 AFRSLIQSGELYRLRREMGIIEHWVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEV--- 194 (437)
Q Consensus 118 ~w~sli~s~~~y~~~~~~~~~~~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~--- 194 (437)
..+++..++.+|++||.. .. ..++++.||+.+++|..++++|.++..++ +++++++||++||..
T Consensus 17 ~~~~~~~~~~i~v~GG~~-~~--------~~~~~~~~d~~~~~W~~~~~~p~~r~~~~----~~~~~~~lyv~GG~~~~~ 83 (308)
T 1zgk_A 17 GSHAPKVGRLIYTAGGYF-RQ--------SLSYLEAYNPSNGTWLRLADLQVPRSGLA----GCVVGGLLYAVGGRNNSP 83 (308)
T ss_dssp ----CCCCCCEEEECCBS-SS--------BCCCEEEEETTTTEEEECCCCSSCCBSCE----EEEETTEEEEECCEEEET
T ss_pred CccccCCCCEEEEEeCcC-CC--------CcceEEEEcCCCCeEeECCCCCcccccce----EEEECCEEEEECCCcCCC
Confidence 345567788999999972 21 35779999999999999999999887543 478899999999962
Q ss_pred ----CCceEEEEECCCCceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCe
Q 043540 195 ----HGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMC 270 (437)
Q Consensus 195 ----~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~ 270 (437)
..+++++||+.+++|+.+++||.+|..|++++++++|||+||.+.. ..++++++||+.+++|+.++++|.+|..+
T Consensus 84 ~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~~~W~~~~~~p~~r~~~ 162 (308)
T 1zgk_A 84 DGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGC-IHHNSVERYEPERDEWHLVAPMLTRRIGV 162 (308)
T ss_dssp TEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETT-EECCCEEEEETTTTEEEECCCCSSCCBSC
T ss_pred CCCeecceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCC-cccccEEEECCCCCeEeECCCCCccccce
Confidence 3478999999999999999999999999999999999999998754 35789999999999999999999999999
Q ss_pred eEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCC--
Q 043540 271 SGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHE-- 348 (437)
Q Consensus 271 ~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~-- 348 (437)
++++++++||++||.. ....++++++||+.+++|+.++++|.+|.. +.+++++++||++||.
T Consensus 163 ~~~~~~~~iyv~GG~~--~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--------------~~~~~~~~~iyv~GG~~~ 226 (308)
T 1zgk_A 163 GVAVLNRLLYAVGGFD--GTNRLNSAECYYPERNEWRMITAMNTIRSG--------------AGVCVLHNCIYAAGGYDG 226 (308)
T ss_dssp EEEEETTEEEEECCBC--SSCBCCCEEEEETTTTEEEECCCCSSCCBS--------------CEEEEETTEEEEECCBCS
T ss_pred EEEEECCEEEEEeCCC--CCCcCceEEEEeCCCCeEeeCCCCCCcccc--------------ceEEEECCEEEEEeCCCC
Confidence 9999999999999987 334478899999999999999999999988 7889999999999985
Q ss_pred ---CCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCceecCccCC
Q 043540 349 ---KEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKLLARQPM 425 (437)
Q Consensus 349 ---~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~ 425 (437)
.+++++||+++++|+.++.+|.++. ++++++++++|||+||.+. ......++.||+.+++|++++.+|.
T Consensus 227 ~~~~~~v~~yd~~~~~W~~~~~~p~~r~-----~~~~~~~~~~i~v~GG~~~---~~~~~~v~~yd~~~~~W~~~~~~p~ 298 (308)
T 1zgk_A 227 QDQLNSVERYDVETETWTFVAPMKHRRS-----ALGITVHQGRIYVLGGYDG---HTFLDSVECYDPDTDTWSEVTRMTS 298 (308)
T ss_dssp SSBCCCEEEEETTTTEEEECCCCSSCCB-----SCEEEEETTEEEEECCBCS---SCBCCEEEEEETTTTEEEEEEECSS
T ss_pred CCccceEEEEeCCCCcEEECCCCCCCcc-----ceEEEEECCEEEEEcCcCC---CcccceEEEEcCCCCEEeecCCCCC
Confidence 4789999999999999999988765 4566788999999999763 2334578899999999999999999
Q ss_pred CceEeeeEEe
Q 043540 426 CGFVFNCTVM 435 (437)
Q Consensus 426 ~~~~~~~~v~ 435 (437)
+|+.|+|+++
T Consensus 299 ~r~~~~~~~l 308 (308)
T 1zgk_A 299 GRSGVGVAVT 308 (308)
T ss_dssp CCBSCEEEEC
T ss_pred CcccceeEeC
Confidence 9999999874
No 2
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=2e-44 Score=343.62 Aligned_cols=277 Identities=21% Similarity=0.348 Sum_probs=240.9
Q ss_pred cCcchHHhhhhcCccccEEEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCcc---CCceEE
Q 043540 124 QSGELYRLRREMGIIEHWVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEV---HGNAIY 200 (437)
Q Consensus 124 ~s~~~y~~~~~~~~~~~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~---~~~~v~ 200 (437)
..+.+|++||.... ..+++++||+.+++|..++++|.++..++ +++++++||++||.. ..++++
T Consensus 14 ~~~~i~v~GG~~~~---------~~~~~~~~d~~~~~W~~~~~~p~~r~~~~----~~~~~~~lyv~GG~~~~~~~~~~~ 80 (302)
T 2xn4_A 14 LPKLMVVVGGQAPK---------AIRSVECYDFKEERWHQVAELPSRRCRAG----MVYMAGLVFAVGGFNGSLRVRTVD 80 (302)
T ss_dssp -CEEEEEECCBSSS---------BCCCEEEEETTTTEEEEECCCSSCCBSCE----EEEETTEEEEESCBCSSSBCCCEE
T ss_pred CCCEEEEECCCCCC---------CCCcEEEEcCcCCcEeEcccCCcccccce----EEEECCEEEEEeCcCCCccccceE
Confidence 46788999986532 34678999999999999999999886544 478899999999943 347899
Q ss_pred EEECCCCceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEECCEEE
Q 043540 201 RYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFMDGKFY 280 (437)
Q Consensus 201 ~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~g~ly 280 (437)
+||+.+++|+.+++||.+|..|++++++++|||+||.+.. ..++++++||+.+++|+.+++||.+|..+++++++++||
T Consensus 81 ~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iy 159 (302)
T 2xn4_A 81 SYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGS-TGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLY 159 (302)
T ss_dssp EEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSS-CEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEE
T ss_pred EECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCC-ccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEE
Confidence 9999999999999999999999999999999999998754 357899999999999999999999999999999999999
Q ss_pred EEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCC-----CCeEEEE
Q 043540 281 VIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHE-----KEEVRKF 355 (437)
Q Consensus 281 v~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~-----~~~v~~y 355 (437)
++||.........+++++||+.+++|+.++++|.+|.. +++++++++||++||. .+++++|
T Consensus 160 v~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--------------~~~~~~~~~iyv~GG~~~~~~~~~~~~y 225 (302)
T 2xn4_A 160 AVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSG--------------AGVGVLNNLLYAVGGHDGPLVRKSVEVY 225 (302)
T ss_dssp EECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBS--------------CEEEEETTEEEEECCBSSSSBCCCEEEE
T ss_pred EEeCCCCCCCccccEEEEEeCCCCcEEECCCCcccccc--------------ccEEEECCEEEEECCCCCCcccceEEEE
Confidence 99998733335678899999999999999999999988 7889999999999984 4689999
Q ss_pred eCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCceecC-ccCCCceEeeeEE
Q 043540 356 DKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKLLA-RQPMCGFVFNCTV 434 (437)
Q Consensus 356 d~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~-~~p~~~~~~~~~v 434 (437)
|+++++|+.++.+|.++. ++++++++++|||+||.+. ......++.||+.+++|+.++ .+|.+|..|++++
T Consensus 226 d~~~~~W~~~~~~~~~r~-----~~~~~~~~~~i~v~GG~~~---~~~~~~v~~yd~~~~~W~~~~~~~~~~r~~~~~~~ 297 (302)
T 2xn4_A 226 DPTTNAWRQVADMNMCRR-----NAGVCAVNGLLYVVGGDDG---SCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTV 297 (302)
T ss_dssp ETTTTEEEEECCCSSCCB-----SCEEEEETTEEEEECCBCS---SSBCCCEEEEETTTTEEEECSSCCSSCCBSCEEEE
T ss_pred eCCCCCEeeCCCCCCccc-----cCeEEEECCEEEEECCcCC---CcccccEEEEcCCCCeEEECCcccCcccccceEEE
Confidence 999999999999988764 4567788999999999763 223456889999999999997 8999999999988
Q ss_pred ee
Q 043540 435 MG 436 (437)
Q Consensus 435 ~~ 436 (437)
++
T Consensus 298 ~~ 299 (302)
T 2xn4_A 298 ID 299 (302)
T ss_dssp EE
T ss_pred ec
Confidence 75
No 3
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=1.8e-44 Score=344.65 Aligned_cols=274 Identities=18% Similarity=0.239 Sum_probs=238.5
Q ss_pred CcchHHhhhhcCccccEEEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCcc--CCceEEEE
Q 043540 125 SGELYRLRREMGIIEHWVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEV--HGNAIYRY 202 (437)
Q Consensus 125 s~~~y~~~~~~~~~~~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~--~~~~v~~y 202 (437)
.+.+|.+||... .++++.||+.+++|..++++|.++..++ ++++++.||++||.. ..+++++|
T Consensus 11 ~~~l~~~GG~~~-----------~~~~~~~d~~~~~W~~~~~~p~~r~~~~----~~~~~~~lyv~GG~~~~~~~~~~~~ 75 (306)
T 3ii7_A 11 HDYRIALFGGSQ-----------PQSCRYFNPKDYSWTDIRCPFEKRRDAA----CVFWDNVVYILGGSQLFPIKRMDCY 75 (306)
T ss_dssp CCEEEEEECCSS-----------TTSEEEEETTTTEEEECCCCSCCCBSCE----EEEETTEEEEECCBSSSBCCEEEEE
T ss_pred cceEEEEeCCCC-----------CceEEEecCCCCCEecCCCCCcccceeE----EEEECCEEEEEeCCCCCCcceEEEE
Confidence 356777777543 4678999999999999999999887544 478999999999954 45789999
Q ss_pred ECCCCceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEECCEEEEE
Q 043540 203 NLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFMDGKFYVI 282 (437)
Q Consensus 203 d~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~g~lyv~ 282 (437)
|+.+++|+.++++|.+|..|++++++++|||+||.+.....++++++||+.+++|+.+++||.+|..|++++++++||++
T Consensus 76 d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~ 155 (306)
T 3ii7_A 76 NVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVC 155 (306)
T ss_dssp ETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEE
T ss_pred eCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEE
Confidence 99999999999999999999999999999999998755557899999999999999999999999999999999999999
Q ss_pred ecccCCCC--ccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCC-----CCeEEEE
Q 043540 283 GGIGEGSS--AMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHE-----KEEVRKF 355 (437)
Q Consensus 283 GG~~~~~~--~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~-----~~~v~~y 355 (437)
||...... ...+++++||+++++|+.++++|.+|.. +.+++++++||++||. .+++++|
T Consensus 156 GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--------------~~~~~~~~~i~v~GG~~~~~~~~~~~~y 221 (306)
T 3ii7_A 156 GGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKN--------------HGLVFVKDKIFAVGGQNGLGGLDNVEYY 221 (306)
T ss_dssp CCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBS--------------CEEEEETTEEEEECCEETTEEBCCEEEE
T ss_pred CCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhc--------------ceEEEECCEEEEEeCCCCCCCCceEEEe
Confidence 99872111 2378999999999999999999999988 7889999999999984 4679999
Q ss_pred eCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCceecCccCCCceEeeeEEe
Q 043540 356 DKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKLLARQPMCGFVFNCTVM 435 (437)
Q Consensus 356 d~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~v~ 435 (437)
|+++++|+.++.+|.++. ++++++++++|||+||.+.. .....+|.||+.+++|+.++.+|.++..|+++++
T Consensus 222 d~~~~~W~~~~~~p~~r~-----~~~~~~~~~~i~v~GG~~~~---~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 293 (306)
T 3ii7_A 222 DIKLNEWKMVSPMPWKGV-----TVKCAAVGSIVYVLAGFQGV---GRLGHILEYNTETDKWVANSKVRAFPVTSCLICV 293 (306)
T ss_dssp ETTTTEEEECCCCSCCBS-----CCEEEEETTEEEEEECBCSS---SBCCEEEEEETTTTEEEEEEEEECCSCTTCEEEE
T ss_pred eCCCCcEEECCCCCCCcc-----ceeEEEECCEEEEEeCcCCC---eeeeeEEEEcCCCCeEEeCCCcccccceeEEEEE
Confidence 999999999999998765 46677889999999998632 2334689999999999999999999999998753
No 4
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.5e-43 Score=337.24 Aligned_cols=277 Identities=21% Similarity=0.335 Sum_probs=241.6
Q ss_pred cCcchHHhhhhcCccccEEEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCcc---CCceEE
Q 043540 124 QSGELYRLRREMGIIEHWVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEV---HGNAIY 200 (437)
Q Consensus 124 ~s~~~y~~~~~~~~~~~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~---~~~~v~ 200 (437)
.++.+|++||...... ..++++.||+.+++|..++.+|.++..++ ++.++++||++||.. ..++++
T Consensus 13 ~~~~i~~~GG~~~~~~-------~~~~~~~~d~~~~~W~~~~~~p~~r~~~~----~~~~~~~l~v~GG~~~~~~~~~~~ 81 (301)
T 2vpj_A 13 ANEVLLVVGGFGSQQS-------PIDVVEKYDPKTQEWSFLPSITRKRRYVA----SVSLHDRIYVIGGYDGRSRLSSVE 81 (301)
T ss_dssp CCEEEEEECCEETTTE-------ECCCEEEEETTTTEEEECCCCSSCCBSCE----EEEETTEEEEECCBCSSCBCCCEE
T ss_pred CCCEEEEEeCccCCCc-------ceeEEEEEcCCCCeEEeCCCCChhhcccc----EEEECCEEEEEcCCCCCccCceEE
Confidence 5678999998332211 35789999999999999999998876544 478899999999953 457899
Q ss_pred EEECCCCc---eecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEECC
Q 043540 201 RYNLLTNT---WSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFMDG 277 (437)
Q Consensus 201 ~yd~~t~~---W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~g 277 (437)
+||+.+++ |+.++++|.+|..|++++++++||++||.++.. .++++++||+.+++|+.++++|.+|..++++++++
T Consensus 82 ~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~ 160 (301)
T 2vpj_A 82 CLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSR-RHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASG 160 (301)
T ss_dssp EEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSC-BCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETT
T ss_pred EEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCc-ccceEEEEcCCCCeEEECCCCCCCcccceEEEECC
Confidence 99999999 999999999999999999999999999987543 57899999999999999999999999999999999
Q ss_pred EEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCC-----CCeE
Q 043540 278 KFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHE-----KEEV 352 (437)
Q Consensus 278 ~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~-----~~~v 352 (437)
+||++||.. .....+++++||+.+++|+.++++|.+|.. +.+++++++||++||. .+++
T Consensus 161 ~iyv~GG~~--~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~--------------~~~~~~~~~i~v~GG~~~~~~~~~v 224 (301)
T 2vpj_A 161 VIYCLGGYD--GLNILNSVEKYDPHTGHWTNVTPMATKRSG--------------AGVALLNDHIYVVGGFDGTAHLSSV 224 (301)
T ss_dssp EEEEECCBC--SSCBCCCEEEEETTTTEEEEECCCSSCCBS--------------CEEEEETTEEEEECCBCSSSBCCCE
T ss_pred EEEEECCCC--CCcccceEEEEeCCCCcEEeCCCCCccccc--------------ceEEEECCEEEEEeCCCCCcccceE
Confidence 999999986 345778899999999999999999999988 7889999999999985 4689
Q ss_pred EEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCceecCccCCCceEeee
Q 043540 353 RKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKLLARQPMCGFVFNC 432 (437)
Q Consensus 353 ~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~ 432 (437)
++||+++++|+.++.+|.++. ++++++++++|||+||.... .....++.||+.+++|+.++.+|.+++.|+|
T Consensus 225 ~~yd~~~~~W~~~~~~p~~r~-----~~~~~~~~~~i~v~GG~~~~---~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~ 296 (301)
T 2vpj_A 225 EAYNIRTDSWTTVTSMTTPRC-----YVGATVLRGRLYAIAGYDGN---SLLSSIECYDPIIDSWEVVTSMGTQRCDAGV 296 (301)
T ss_dssp EEEETTTTEEEEECCCSSCCB-----SCEEEEETTEEEEECCBCSS---SBEEEEEEEETTTTEEEEEEEEEEEEESCEE
T ss_pred EEEeCCCCcEEECCCCCCccc-----ceeEEEECCEEEEEcCcCCC---cccccEEEEcCCCCeEEEcCCCCcccccceE
Confidence 999999999999999988765 45667889999999997632 3456789999999999999999999999999
Q ss_pred EEee
Q 043540 433 TVMG 436 (437)
Q Consensus 433 ~v~~ 436 (437)
+++.
T Consensus 297 ~~~~ 300 (301)
T 2vpj_A 297 CVLR 300 (301)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 8763
No 5
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=9e-42 Score=327.41 Aligned_cols=261 Identities=18% Similarity=0.281 Sum_probs=222.3
Q ss_pred ceEEEeccCCCCeeeCCCCCC--ccccccCCceeEEeCCEEEEEcCc-----c----CCceEEEEECCCCceecCCCCCC
Q 043540 149 KEWEAFDPIHHRWMHLPPMNA--SDCFMCADKESLAVGTELLVFGKE-----V----HGNAIYRYNLLTNTWSTGMTMNT 217 (437)
Q Consensus 149 ~~~~~yDp~~~~W~~l~~~p~--~~~~~~~~~~~~~~~~~lyv~GG~-----~----~~~~v~~yd~~t~~W~~~~~~~~ 217 (437)
.++++|||.+++|.. +++|. +|.. +++++++++||++||. . ..+++++||+.+++|+.++++|.
T Consensus 13 ~~~~~yd~~~~~W~~-~~~~~p~~r~~----~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~ 87 (315)
T 4asc_A 13 EGAVAYDPAANECYC-ASLSSQVPKNH----VSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPS 87 (315)
T ss_dssp TEEEEEETTTTEEEE-EECCCCSCSSE----EEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSS
T ss_pred CceEEECCCCCeEec-CCCCCCCCccc----eEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCc
Confidence 678999999999987 66654 4443 3457789999999993 1 12459999999999999999999
Q ss_pred CccceeeEEECCEEEEEeccCC--CCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEECCEEEEEecccCCCCccCCe
Q 043540 218 PRCLFGSASLGEIAILAGGCDP--RGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTD 295 (437)
Q Consensus 218 ~r~~~~~~~~~~~iyv~GG~~~--~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~ 295 (437)
+|..|++++++++|||+||.+. ....++++++||+.+++|+.++++|.+|..|++++++++|||+||.. .....+++
T Consensus 88 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~-~~~~~~~~ 166 (315)
T 4asc_A 88 PRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKG-SDRKCLNK 166 (315)
T ss_dssp CEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBC-TTSCBCCC
T ss_pred chhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCC-CCCcccce
Confidence 9999999999999999999752 34578999999999999999999999999999999999999999985 35567889
Q ss_pred EEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCC-----CCeEEEEeCCCCcEEEccCCCC
Q 043540 296 VEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHE-----KEEVRKFDKGRKLWRTLGRLPE 370 (437)
Q Consensus 296 v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~-----~~~v~~yd~~~~~W~~v~~lp~ 370 (437)
+++||+.+++|+.++++|.+|.. +++++++++||++||. .+++++||+++++|+.++.+|.
T Consensus 167 ~~~yd~~~~~W~~~~~~p~~r~~--------------~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~ 232 (315)
T 4asc_A 167 MCVYDPKKFEWKELAPMQTARSL--------------FGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQ 232 (315)
T ss_dssp EEEEETTTTEEEECCCCSSCCBS--------------CEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSS
T ss_pred EEEEeCCCCeEEECCCCCCchhc--------------eEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCC
Confidence 99999999999999999999998 7889999999999984 3479999999999999999988
Q ss_pred cccCCCcccEEEEEeCCEEEEEcCCCCC---CCC---eeEEEeeecCCCCCCceecCccCCCceEeeeEEee
Q 043540 371 QASSMNGWGLAFRACGDQLIVIGGPRDS---GGG---IVELNGWVPDEGPPHWKLLARQPMCGFVFNCTVMG 436 (437)
Q Consensus 371 ~~~~~~~~~~a~~~~~~~l~v~GG~~~~---~~~---~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~v~~ 436 (437)
++. ++++++++++|||+||.... ++. ....++|.||+.+++|+++ +|.+++.|++++++
T Consensus 233 ~r~-----~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~--~~~~r~~~~~~~~~ 297 (315)
T 4asc_A 233 ERS-----SLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV--LREIAYAAGATFLP 297 (315)
T ss_dssp CCB-----SCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE--ESCSSCCSSCEEEE
T ss_pred ccc-----ceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh--ccCCcCccceEEeC
Confidence 875 46677889999999997531 111 3456799999999999999 66667778887654
No 6
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=2e-41 Score=325.40 Aligned_cols=261 Identities=16% Similarity=0.296 Sum_probs=221.5
Q ss_pred ceEEEeccCCCCeeeCCCCC--CccccccCCceeEEeCCEEEEEcCcc---------CCceEEEEECCCCceecCCCCCC
Q 043540 149 KEWEAFDPIHHRWMHLPPMN--ASDCFMCADKESLAVGTELLVFGKEV---------HGNAIYRYNLLTNTWSTGMTMNT 217 (437)
Q Consensus 149 ~~~~~yDp~~~~W~~l~~~p--~~~~~~~~~~~~~~~~~~lyv~GG~~---------~~~~v~~yd~~t~~W~~~~~~~~ 217 (437)
..++.|||.+++|... +++ .++.. ++++.+++.||++||.. ..+++++||+.+++|+.+++||.
T Consensus 24 ~~~~~yd~~~~~W~~~-~~~~~~~r~~----~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~ 98 (318)
T 2woz_A 24 TAAVAYDPMENECYLT-ALAEQIPRNH----SSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPS 98 (318)
T ss_dssp SEEEEEETTTTEEEEE-EECTTSCSSE----EEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSS
T ss_pred cceEEECCCCCceecc-cCCccCCccc----eEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCc
Confidence 3478999999999883 444 34443 34577899999999931 12359999999999999999999
Q ss_pred CccceeeEEECCEEEEEeccCC-CCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeE
Q 043540 218 PRCLFGSASLGEIAILAGGCDP-RGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDV 296 (437)
Q Consensus 218 ~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v 296 (437)
+|..|++++++++|||+||.+. ....++++++||+.+++|+.++++|.+|..|++++++++||++||.. ......+++
T Consensus 99 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~-~~~~~~~~~ 177 (318)
T 2woz_A 99 ARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKT-DDKKCTNRV 177 (318)
T ss_dssp CBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEE-SSSCBCCCE
T ss_pred cccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCC-CCCCccceE
Confidence 9999999999999999999863 34567899999999999999999999999999999999999999986 345668889
Q ss_pred EEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCC-----CCeEEEEeCCCCcEEEccCCCCc
Q 043540 297 EMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHE-----KEEVRKFDKGRKLWRTLGRLPEQ 371 (437)
Q Consensus 297 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~-----~~~v~~yd~~~~~W~~v~~lp~~ 371 (437)
++||+.+++|+.++++|.+|.. +++++++++||++||. .+++++||+++++|+.++.+|.+
T Consensus 178 ~~yd~~~~~W~~~~~~p~~r~~--------------~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~ 243 (318)
T 2woz_A 178 FIYNPKKGDWKDLAPMKTPRSM--------------FGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE 243 (318)
T ss_dssp EEEETTTTEEEEECCCSSCCBS--------------CEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC
T ss_pred EEEcCCCCEEEECCCCCCCccc--------------ceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc
Confidence 9999999999999999999988 7889999999999974 35799999999999999999987
Q ss_pred ccCCCcccEEEEEeCCEEEEEcCCCCCCC------CeeEEEeeecCCCCCCceecCccCCCceEeeeEEee
Q 043540 372 ASSMNGWGLAFRACGDQLIVIGGPRDSGG------GIVELNGWVPDEGPPHWKLLARQPMCGFVFNCTVMG 436 (437)
Q Consensus 372 ~~~~~~~~~a~~~~~~~l~v~GG~~~~~~------~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~v~~ 436 (437)
+. ++++++++++|||+||...... .....++|.||+.+++|+++ +|.+++.|++++++
T Consensus 244 r~-----~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~--~~~~r~~~~~~~~~ 307 (318)
T 2woz_A 244 RS-----SISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM--LKEIRYASGASCLA 307 (318)
T ss_dssp CB-----SCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE--ESCCGGGTTCEEEE
T ss_pred cc-----ceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh--cccccccccceeeC
Confidence 65 4667789999999999864211 12345789999999999999 88889999887754
No 7
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=1.8e-38 Score=303.47 Aligned_cols=232 Identities=22% Similarity=0.307 Sum_probs=205.7
Q ss_pred EEeCCEEEEEcCc--cCCceEEEEECCCCceecCCCCCCCccceeeEEECCEEEEEeccC---CCCCCCceEEEEECCCC
Q 043540 181 LAVGTELLVFGKE--VHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCD---PRGKLLKSAELYNSITG 255 (437)
Q Consensus 181 ~~~~~~lyv~GG~--~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~---~~~~~~~~~~~yd~~t~ 255 (437)
+.+++.||+|||. ...+++++||+.+++|+.++++|.+|..|++++++++|||+||.. .....++++++||+.++
T Consensus 21 ~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 21 PKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred cCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 7889999999994 445789999999999999999999999999999999999999983 22345789999999999
Q ss_pred cEEecCCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEE
Q 043540 256 TWMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLL 335 (437)
Q Consensus 256 ~W~~~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (437)
+|+.+++||.+|..+++++++++||++||.. ....++++++||+.+++|+.++++|.+|.. +++
T Consensus 101 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~--~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--------------~~~ 164 (308)
T 1zgk_A 101 QWSPCAPMSVPRNRIGVGVIDGHIYAVGGSH--GCIHHNSVERYEPERDEWHLVAPMLTRRIG--------------VGV 164 (308)
T ss_dssp EEEECCCCSSCCBTCEEEEETTEEEEECCEE--TTEECCCEEEEETTTTEEEECCCCSSCCBS--------------CEE
T ss_pred eEeECCCCCcCccccEEEEECCEEEEEcCCC--CCcccccEEEECCCCCeEeECCCCCccccc--------------eEE
Confidence 9999999999999999999999999999987 345678899999999999999999999988 788
Q ss_pred EEECCEEEEEeCC-----CCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeec
Q 043540 336 AVVNNELYAADHE-----KEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVP 410 (437)
Q Consensus 336 ~~~~~~ly~~gg~-----~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~ 410 (437)
++++++||++||. .+++++||+.+++|+.++.+|.++. ++++++++++|||+||.... .....+|.|
T Consensus 165 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-----~~~~~~~~~~iyv~GG~~~~---~~~~~v~~y 236 (308)
T 1zgk_A 165 AVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRS-----GAGVCVLHNCIYAAGGYDGQ---DQLNSVERY 236 (308)
T ss_dssp EEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCB-----SCEEEEETTEEEEECCBCSS---SBCCCEEEE
T ss_pred EEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccc-----cceEEEECCEEEEEeCCCCC---CccceEEEE
Confidence 9999999999984 4689999999999999999988765 45677889999999998632 234568899
Q ss_pred CCCCCCceecCccCCCceEeeeEEee
Q 043540 411 DEGPPHWKLLARQPMCGFVFNCTVMG 436 (437)
Q Consensus 411 d~~~~~W~~l~~~p~~~~~~~~~v~~ 436 (437)
|+.+++|++++.+|.++..|++++.+
T Consensus 237 d~~~~~W~~~~~~p~~r~~~~~~~~~ 262 (308)
T 1zgk_A 237 DVETETWTFVAPMKHRRSALGITVHQ 262 (308)
T ss_dssp ETTTTEEEECCCCSSCCBSCEEEEET
T ss_pred eCCCCcEEECCCCCCCccceEEEEEC
Confidence 99999999999999999999987653
No 8
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=5.4e-38 Score=299.71 Aligned_cols=228 Identities=18% Similarity=0.256 Sum_probs=205.5
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCC
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSM 263 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 263 (437)
.+.||++||....+++++||+.+++|+.++++|.+|..|++++++++|||+||.+ ...++++++||+.+++|+.++++
T Consensus 11 ~~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~--~~~~~~~~~~d~~~~~W~~~~~~ 88 (306)
T 3ii7_A 11 HDYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQ--LFPIKRMDCYNVVKDSWYSKLGP 88 (306)
T ss_dssp CCEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBS--SSBCCEEEEEETTTTEEEEEECC
T ss_pred cceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCC--CCCcceEEEEeCCCCeEEECCCC
Confidence 5789999997768899999999999999999999999999999999999999987 45689999999999999999999
Q ss_pred CcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEE
Q 043540 264 HKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELY 343 (437)
Q Consensus 264 ~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly 343 (437)
|.+|..|++++++++|||+||.. .....++++++||+.+++|+.++++|.+|.. +++++++++||
T Consensus 89 p~~r~~~~~~~~~~~iyv~GG~~-~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~--------------~~~~~~~~~iy 153 (306)
T 3ii7_A 89 PTPRDSLAACAAEGKIYTSGGSE-VGNSALYLFECYDTRTESWHTKPSMLTQRCS--------------HGMVEANGLIY 153 (306)
T ss_dssp SSCCBSCEEEEETTEEEEECCBB-TTBSCCCCEEEEETTTTEEEEECCCSSCCBS--------------CEEEEETTEEE
T ss_pred CccccceeEEEECCEEEEECCCC-CCCcEeeeEEEEeCCCCceEeCCCCcCCcce--------------eEEEEECCEEE
Confidence 99999999999999999999986 3456788999999999999999999999988 78899999999
Q ss_pred EEeCC---------CCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCC
Q 043540 344 AADHE---------KEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGP 414 (437)
Q Consensus 344 ~~gg~---------~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~ 414 (437)
++||. .+++++||+.+++|+.++.+|.++. ++++++++++|||+||.... .....++.||+.+
T Consensus 154 v~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-----~~~~~~~~~~i~v~GG~~~~---~~~~~~~~yd~~~ 225 (306)
T 3ii7_A 154 VCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARK-----NHGLVFVKDKIFAVGGQNGL---GGLDNVEYYDIKL 225 (306)
T ss_dssp EECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCB-----SCEEEEETTEEEEECCEETT---EEBCCEEEEETTT
T ss_pred EECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhh-----cceEEEECCEEEEEeCCCCC---CCCceEEEeeCCC
Confidence 99973 5789999999999999999988765 46677889999999997632 3345689999999
Q ss_pred CCceecCccCCCceEeeeEEee
Q 043540 415 PHWKLLARQPMCGFVFNCTVMG 436 (437)
Q Consensus 415 ~~W~~l~~~p~~~~~~~~~v~~ 436 (437)
++|+.++.+|.++..|++++++
T Consensus 226 ~~W~~~~~~p~~r~~~~~~~~~ 247 (306)
T 3ii7_A 226 NEWKMVSPMPWKGVTVKCAAVG 247 (306)
T ss_dssp TEEEECCCCSCCBSCCEEEEET
T ss_pred CcEEECCCCCCCccceeEEEEC
Confidence 9999999999999999988764
No 9
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=2.7e-38 Score=308.38 Aligned_cols=267 Identities=17% Similarity=0.164 Sum_probs=212.1
Q ss_pred hhcCcchHHhhhhcCccccEEEEEecCceEEEeccC--CCCeeeCCCCC-CccccccCCceeEEeCCEEEEEcCc-c---
Q 043540 122 LIQSGELYRLRREMGIIEHWVYFSCKLKEWEAFDPI--HHRWMHLPPMN-ASDCFMCADKESLAVGTELLVFGKE-V--- 194 (437)
Q Consensus 122 li~s~~~y~~~~~~~~~~~~l~~~~~~~~~~~yDp~--~~~W~~l~~~p-~~~~~~~~~~~~~~~~~~lyv~GG~-~--- 194 (437)
++.++.+|++||..+ +++++||+. +++|..+++|| .+|..++ +++++++|||+||. .
T Consensus 16 ~~~~~~iyv~GG~~~------------~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~----~~~~~~~lyv~GG~~~~~~ 79 (357)
T 2uvk_A 16 AIDNDTVYIGLGSAG------------TAWYKLDTQAKDKKWTALAAFPGGPRDQAT----SAFIDGNLYVFGGIGKNSE 79 (357)
T ss_dssp EEETTEEEEECGGGT------------TCEEEEETTSSSCCEEECCCCTTCCCBSCE----EEEETTEEEEECCEEECTT
T ss_pred EEECCEEEEEeCcCC------------CeEEEEccccCCCCeeECCCCCCCcCccce----EEEECCEEEEEcCCCCCCC
Confidence 345889999998753 357899998 49999999999 6776544 48889999999996 2
Q ss_pred ----CCceEEEEECCCCceecCCCCC-CCccceeeEEECCEEEEEeccCCCC----------------------------
Q 043540 195 ----HGNAIYRYNLLTNTWSTGMTMN-TPRCLFGSASLGEIAILAGGCDPRG---------------------------- 241 (437)
Q Consensus 195 ----~~~~v~~yd~~t~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~---------------------------- 241 (437)
..+++++||+.+++|+.+++|+ .+|..|++++++++|||+||.+...
T Consensus 80 ~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (357)
T 2uvk_A 80 GLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDK 159 (357)
T ss_dssp SCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred ccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccc
Confidence 2478999999999999999988 9999999999999999999976421
Q ss_pred -----CCCceEEEEECCCCcEEecCCCCcCCcC-eeEEEECCEEEEEecccCCCCccCCeEEEEEC--CCCceEecCCCC
Q 043540 242 -----KLLKSAELYNSITGTWMPISSMHKARKM-CSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDL--ETGKWTQITDMF 313 (437)
Q Consensus 242 -----~~~~~~~~yd~~t~~W~~~~~~~~~r~~-~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~--~~~~W~~~~~~~ 313 (437)
..++++++||+.+++|+.+++||.+|.. +++++++++|||+||.. ........++.||+ ++++|+.+++++
T Consensus 160 ~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~-~~~~~~~~v~~~d~d~~~~~W~~~~~~~ 238 (357)
T 2uvk_A 160 KAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEA-KPGLRTDAVFELDFTGNNLKWNKLAPVS 238 (357)
T ss_dssp CGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEE-ETTEECCCEEEEECC---CEEEECCCSS
T ss_pred cccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeec-CCCcccCceEEEEecCCCCcEEecCCCC
Confidence 2468999999999999999999987655 99999999999999986 33455778999987 999999999887
Q ss_pred CcccCCCCcccccccCCCCCEEEEECCEEEEEeCCC----------------------CeEEEEeCCCCcEEEccCCCCc
Q 043540 314 PARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEK----------------------EEVRKFDKGRKLWRTLGRLPEQ 371 (437)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~----------------------~~v~~yd~~~~~W~~v~~lp~~ 371 (437)
.++.. ..+++++++++||++||.. .++++||+++++|++++.+|.+
T Consensus 239 ~~~~~------------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~ 306 (357)
T 2uvk_A 239 SPDGV------------AGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQG 306 (357)
T ss_dssp TTTCC------------BSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSC
T ss_pred CCccc------------ccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCC
Confidence 66543 1167899999999999831 3689999999999999999988
Q ss_pred ccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCceecCccC
Q 043540 372 ASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKLLARQP 424 (437)
Q Consensus 372 ~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p 424 (437)
+. +++++.++++|||+||.+..+ ....++|.++.++++|.++.+.|
T Consensus 307 r~-----~~~~~~~~~~i~v~GG~~~~~--~~~~~v~~l~~~~~~~~~~~~~~ 352 (357)
T 2uvk_A 307 RA-----YGVSLPWNNSLLIIGGETAGG--KAVTDSVLITVKDNKVTVQNLEH 352 (357)
T ss_dssp CB-----SSEEEEETTEEEEEEEECGGG--CEEEEEEEEEC-CCSCEEEC---
T ss_pred cc-----cceeEEeCCEEEEEeeeCCCC--CEeeeEEEEEEcCcEeEeeeccc
Confidence 75 355678999999999987433 23456777777899999987766
No 10
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=8.2e-38 Score=304.98 Aligned_cols=253 Identities=16% Similarity=0.149 Sum_probs=204.3
Q ss_pred eCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECC--CCceecCCCCC-CCccceeeEEECCEEEEEecc-C
Q 043540 163 HLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLL--TNTWSTGMTMN-TPRCLFGSASLGEIAILAGGC-D 238 (437)
Q Consensus 163 ~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~--t~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~-~ 238 (437)
.+++||.++..++ ++.++++||++||.. .+++++||+. +++|+.+++|| .+|..|++++++++|||+||. +
T Consensus 2 ~l~~lP~~r~~~~----~~~~~~~iyv~GG~~-~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~ 76 (357)
T 2uvk_A 2 VLPETPVPFKSGT----GAIDNDTVYIGLGSA-GTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGK 76 (357)
T ss_dssp CSCCCSSCCCSCE----EEEETTEEEEECGGG-TTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEE
T ss_pred CCCCCCccccceE----EEEECCEEEEEeCcC-CCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCC
Confidence 5788999887543 367799999999965 3589999998 49999999999 899999999999999999998 3
Q ss_pred ---CCCCCCceEEEEECCCCcEEecCCCC-cCCcCeeEEEECCEEEEEecccCCC-------------------------
Q 043540 239 ---PRGKLLKSAELYNSITGTWMPISSMH-KARKMCSGVFMDGKFYVIGGIGEGS------------------------- 289 (437)
Q Consensus 239 ---~~~~~~~~~~~yd~~t~~W~~~~~~~-~~r~~~~~~~~~g~lyv~GG~~~~~------------------------- 289 (437)
.....++++++||+.+++|+.+++|+ .+|..|++++++++|||+||.....
T Consensus 77 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (357)
T 2uvk_A 77 NSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHY 156 (357)
T ss_dssp CTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhh
Confidence 22346789999999999999999998 8999999999999999999975110
Q ss_pred -------CccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCC------CCeEEEEe
Q 043540 290 -------SAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHE------KEEVRKFD 356 (437)
Q Consensus 290 -------~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~------~~~v~~yd 356 (437)
...++++++||+.+++|+.++++|.++..+ +++++++++||++||. .+++++||
T Consensus 157 ~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~-------------~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d 223 (357)
T 2uvk_A 157 FDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAG-------------AAVVNKGDKTWLINGEAKPGLRTDAVFELD 223 (357)
T ss_dssp HSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBS-------------CEEEEETTEEEEECCEEETTEECCCEEEEE
T ss_pred ccccccccCCcccEEEEeCCCCcEEECCCCCCCCccc-------------ccEEEECCEEEEEeeecCCCcccCceEEEE
Confidence 024679999999999999999988765442 6788999999999983 56799998
Q ss_pred C--CCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCC--------------CCeeEEEeeecCCCCCCceec
Q 043540 357 K--GRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSG--------------GGIVELNGWVPDEGPPHWKLL 420 (437)
Q Consensus 357 ~--~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~--------------~~~~~~~~~~~d~~~~~W~~l 420 (437)
+ ++++|+.+..+|.++.. +++++++++++|||+||....+ +......++.||+.+++|+++
T Consensus 224 ~d~~~~~W~~~~~~~~~~~~---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~ 300 (357)
T 2uvk_A 224 FTGNNLKWNKLAPVSSPDGV---AGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS 300 (357)
T ss_dssp CC---CEEEECCCSSTTTCC---BSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE
T ss_pred ecCCCCcEEecCCCCCCccc---ccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC
Confidence 6 99999999998766532 3566788999999999975321 122335678899999999999
Q ss_pred CccCCCceEeeeEEee
Q 043540 421 ARQPMCGFVFNCTVMG 436 (437)
Q Consensus 421 ~~~p~~~~~~~~~v~~ 436 (437)
+.+|.+|+.|++++.+
T Consensus 301 ~~~p~~r~~~~~~~~~ 316 (357)
T 2uvk_A 301 GELSQGRAYGVSLPWN 316 (357)
T ss_dssp EECSSCCBSSEEEEET
T ss_pred CCCCCCcccceeEEeC
Confidence 9999999999887653
No 11
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=2e-37 Score=295.13 Aligned_cols=230 Identities=19% Similarity=0.405 Sum_probs=202.1
Q ss_pred EEeCCEEEEEcCcc--CCceEEEEECCCCceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEE
Q 043540 181 LAVGTELLVFGKEV--HGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWM 258 (437)
Q Consensus 181 ~~~~~~lyv~GG~~--~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~ 258 (437)
+.+++.||++||.. ..+++++||+.+++|+.++++|.+|..|++++++++||++||.++. ..++++++||+.+++|+
T Consensus 12 ~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~~~~d~~~~~W~ 90 (302)
T 2xn4_A 12 MNLPKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGS-LRVRTVDSYDPVKDQWT 90 (302)
T ss_dssp ---CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSS-SBCCCEEEEETTTTEEE
T ss_pred cCCCCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCC-ccccceEEECCCCCcee
Confidence 56788999999953 3478999999999999999999999999999999999999998754 35789999999999999
Q ss_pred ecCCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE
Q 043540 259 PISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV 338 (437)
Q Consensus 259 ~~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (437)
.+++||.+|..|++++++++||++||.. ....++++++||+.+++|+.++++|.+|.. ++++++
T Consensus 91 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~--~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~--------------~~~~~~ 154 (302)
T 2xn4_A 91 SVANMRDRRSTLGAAVLNGLLYAVGGFD--GSTGLSSVEAYNIKSNEWFHVAPMNTRRSS--------------VGVGVV 154 (302)
T ss_dssp EECCCSSCCBSCEEEEETTEEEEEEEEC--SSCEEEEEEEEETTTTEEEEECCCSSCCBS--------------CEEEEE
T ss_pred eCCCCCccccceEEEEECCEEEEEcCCC--CCccCceEEEEeCCCCeEeecCCCCCcccC--------------ceEEEE
Confidence 9999999999999999999999999986 345678899999999999999999999988 788999
Q ss_pred CCEEEEEeCC-------CCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecC
Q 043540 339 NNELYAADHE-------KEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPD 411 (437)
Q Consensus 339 ~~~ly~~gg~-------~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d 411 (437)
+++||++||. .+++++||+.+++|+.++.+|.++. ++++++++++|||+||.+. ......+|.||
T Consensus 155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-----~~~~~~~~~~iyv~GG~~~---~~~~~~~~~yd 226 (302)
T 2xn4_A 155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRS-----GAGVGVLNNLLYAVGGHDG---PLVRKSVEVYD 226 (302)
T ss_dssp TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCB-----SCEEEEETTEEEEECCBSS---SSBCCCEEEEE
T ss_pred CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccc-----cccEEEECCEEEEECCCCC---CcccceEEEEe
Confidence 9999999973 4679999999999999999988765 4667788999999999763 22345688999
Q ss_pred CCCCCceecCccCCCceEeeeEEe
Q 043540 412 EGPPHWKLLARQPMCGFVFNCTVM 435 (437)
Q Consensus 412 ~~~~~W~~l~~~p~~~~~~~~~v~ 435 (437)
+.+++|+.++.+|.++..|++++.
T Consensus 227 ~~~~~W~~~~~~~~~r~~~~~~~~ 250 (302)
T 2xn4_A 227 PTTNAWRQVADMNMCRRNAGVCAV 250 (302)
T ss_dssp TTTTEEEEECCCSSCCBSCEEEEE
T ss_pred CCCCCEeeCCCCCCccccCeEEEE
Confidence 999999999999999998888764
No 12
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=9.5e-37 Score=290.27 Aligned_cols=230 Identities=23% Similarity=0.350 Sum_probs=203.5
Q ss_pred EeCCEEEEEcC-c---cCCceEEEEECCCCceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCc-
Q 043540 182 AVGTELLVFGK-E---VHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGT- 256 (437)
Q Consensus 182 ~~~~~lyv~GG-~---~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~- 256 (437)
.+++.||++|| . ...+++++||+.+++|+.++++|.+|..|++++++++||++||.++. ..++++++||+.+++
T Consensus 12 ~~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 12 GANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGR-SRLSSVECLDYTADED 90 (301)
T ss_dssp -CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSS-CBCCCEEEEETTCCTT
T ss_pred cCCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCC-ccCceEEEEECCCCCC
Confidence 46889999999 3 34578999999999999999999999999999999999999998743 467899999999999
Q ss_pred --EEecCCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCE
Q 043540 257 --WMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPL 334 (437)
Q Consensus 257 --W~~~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (437)
|+.++++|.+|..+++++++++||++||.. ....++++++||+.+++|+.++++|.+|.. ++
T Consensus 91 ~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~--~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~--------------~~ 154 (301)
T 2vpj_A 91 GVWYSVAPMNVRRGLAGATTLGDMIYVSGGFD--GSRRHTSMERYDPNIDQWSMLGDMQTAREG--------------AG 154 (301)
T ss_dssp CCCEEECCCSSCCBSCEEEEETTEEEEECCBC--SSCBCCEEEEEETTTTEEEEEEECSSCCBS--------------CE
T ss_pred CeeEECCCCCCCccceeEEEECCEEEEEcccC--CCcccceEEEEcCCCCeEEECCCCCCCccc--------------ce
Confidence 999999999999999999999999999987 345578999999999999999999999988 78
Q ss_pred EEEECCEEEEEeCC-----CCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeee
Q 043540 335 LAVVNNELYAADHE-----KEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWV 409 (437)
Q Consensus 335 ~~~~~~~ly~~gg~-----~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~ 409 (437)
+++++++||++||. .+++++||+.+++|+.++.+|.++. ++++++++++|||+||.... .....+|.
T Consensus 155 ~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-----~~~~~~~~~~i~v~GG~~~~---~~~~~v~~ 226 (301)
T 2vpj_A 155 LVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRS-----GAGVALLNDHIYVVGGFDGT---AHLSSVEA 226 (301)
T ss_dssp EEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCB-----SCEEEEETTEEEEECCBCSS---SBCCCEEE
T ss_pred EEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccc-----cceEEEECCEEEEEeCCCCC---cccceEEE
Confidence 89999999999984 4689999999999999999988765 46677889999999998632 22456888
Q ss_pred cCCCCCCceecCccCCCceEeeeEEee
Q 043540 410 PDEGPPHWKLLARQPMCGFVFNCTVMG 436 (437)
Q Consensus 410 ~d~~~~~W~~l~~~p~~~~~~~~~v~~ 436 (437)
||+.+++|+.++.+|.++..|++++++
T Consensus 227 yd~~~~~W~~~~~~p~~r~~~~~~~~~ 253 (301)
T 2vpj_A 227 YNIRTDSWTTVTSMTTPRCYVGATVLR 253 (301)
T ss_dssp EETTTTEEEEECCCSSCCBSCEEEEET
T ss_pred EeCCCCcEEECCCCCCcccceeEEEEC
Confidence 999999999999999999999887653
No 13
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=298.17 Aligned_cols=241 Identities=17% Similarity=0.295 Sum_probs=205.3
Q ss_pred hhcCcchHHhhhhcC----ccccEEEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCc----
Q 043540 122 LIQSGELYRLRREMG----IIEHWVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKE---- 193 (437)
Q Consensus 122 li~s~~~y~~~~~~~----~~~~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~---- 193 (437)
++.++.+|++||... .... ...+++.||+.+++|..++++|.+|..++ +++++++||++||.
T Consensus 42 ~~~~~~iyv~GG~~~~~~~~~~~------~~~~~~~~d~~~~~W~~~~~~p~~r~~~~----~~~~~~~lyv~GG~~~~~ 111 (315)
T 4asc_A 42 VTKENQVFVAGGLFYNEDNKEDP------MSAYFLQFDHLDSEWLGMPPLPSPRCLFG----LGEALNSIYVVGGREIKD 111 (315)
T ss_dssp ECTTCCEEEEEEEEECSSCSSSC------EEEEEEEEETTTTEEEECCCBSSCEESCE----EEEETTEEEEECCEESST
T ss_pred EEECCEEEEEcCcccCCCCCccc------cccceEEecCCCCeEEECCCCCcchhcee----EEEECCEEEEEeCCcCCC
Confidence 456889999999631 1111 12458999999999999999999887544 47889999999993
Q ss_pred --cCCceEEEEECCCCceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCee
Q 043540 194 --VHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCS 271 (437)
Q Consensus 194 --~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~ 271 (437)
...+++++||+.+++|+.++++|.+|..|++++++++|||+||.+.....++++++||+.+++|+.+++||.+|..|+
T Consensus 112 ~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 191 (315)
T 4asc_A 112 GERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFG 191 (315)
T ss_dssp TCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCE
T ss_pred CCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceE
Confidence 345789999999999999999999999999999999999999986555678999999999999999999999999999
Q ss_pred EEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCC--
Q 043540 272 GVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEK-- 349 (437)
Q Consensus 272 ~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~-- 349 (437)
+++++++|||+||.. .....+++++||+++++|+.++++|.+|.. +++++++++||++||..
T Consensus 192 ~~~~~~~iyv~GG~~--~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--------------~~~~~~~~~l~v~GG~~~~ 255 (315)
T 4asc_A 192 ATVHDGRIIVAAGVT--DTGLTSSAEVYSITDNKWAPFEAFPQERSS--------------LSLVSLVGTLYAIGGFATL 255 (315)
T ss_dssp EEEETTEEEEEEEEC--SSSEEEEEEEEETTTTEEEEECCCSSCCBS--------------CEEEEETTEEEEEEEEEEE
T ss_pred EEEECCEEEEEeccC--CCCccceEEEEECCCCeEEECCCCCCcccc--------------eeEEEECCEEEEECCcccc
Confidence 999999999999986 344678899999999999999999999998 78899999999999842
Q ss_pred ------------CeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCC
Q 043540 350 ------------EEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGP 395 (437)
Q Consensus 350 ------------~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~ 395 (437)
+++++||+++++|+.+. +.++. ++++++++++|||+...
T Consensus 256 ~~~~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~r~-----~~~~~~~~~~l~v~~~~ 306 (315)
T 4asc_A 256 ETESGELVPTELNDIWRYNEEEKKWEGVL--REIAY-----AAGATFLPVRLNVLRLT 306 (315)
T ss_dssp ECTTSCEEEEEEEEEEEEETTTTEEEEEE--SCSSC-----CSSCEEEEEEECGGGSE
T ss_pred CcCCccccccccCcEEEecCCCChhhhhc--cCCcC-----ccceEEeCCEEEEEEeh
Confidence 46999999999999994 33333 34456789999998753
No 14
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=6.4e-37 Score=294.00 Aligned_cols=244 Identities=20% Similarity=0.320 Sum_probs=204.7
Q ss_pred hhcCcchHHhhhhcCccccEEEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCcc-----CC
Q 043540 122 LIQSGELYRLRREMGIIEHWVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEV-----HG 196 (437)
Q Consensus 122 li~s~~~y~~~~~~~~~~~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~-----~~ 196 (437)
++.++.+|++||.....+.. .......++.||+.+++|..++++|.+|..++ +++++++||++||.. ..
T Consensus 53 ~~~~~~lyv~GG~~~~~~~~--~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~----~~~~~~~iyv~GG~~~~~~~~~ 126 (318)
T 2woz_A 53 VTQQNQVYVVGGLYVDEENK--DQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG----LGEVDDKIYVVAGKDLQTEASL 126 (318)
T ss_dssp ECSSSCEEEEESSCC---------CCCBEEEEEETTTTEEEECSCBSSCBCSCE----EEEETTEEEEEEEEBTTTCCEE
T ss_pred EEECCEEEEECCcccCcccc--CCCccccEEEEeCCCCcEEECCCCCccccccc----eEEECCEEEEEcCccCCCCccc
Confidence 45678999999953211000 00012348999999999999999999887544 478899999999853 23
Q ss_pred ceEEEEECCCCceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEEC
Q 043540 197 NAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFMD 276 (437)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~ 276 (437)
+++++||+.+++|+.++++|.+|..|++++++++|||+||.+.....++++++||+.+++|+.+++||.+|..|++++++
T Consensus 127 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 206 (318)
T 2woz_A 127 DSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHK 206 (318)
T ss_dssp EEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEET
T ss_pred ceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEEC
Confidence 68999999999999999999999999999999999999998665567899999999999999999999999999999999
Q ss_pred CEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCC--------
Q 043540 277 GKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHE-------- 348 (437)
Q Consensus 277 g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~-------- 348 (437)
++|||+||.. .....+++++||+++++|+.++++|.+|.. +.+++++++||++||.
T Consensus 207 ~~iyv~GG~~--~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--------------~~~~~~~~~i~v~GG~~~~~~~~~ 270 (318)
T 2woz_A 207 GKIVIAGGVT--EDGLSASVEAFDLKTNKWEVMTEFPQERSS--------------ISLVSLAGSLYAIGGFAMIQLESK 270 (318)
T ss_dssp TEEEEEEEEE--TTEEEEEEEEEETTTCCEEECCCCSSCCBS--------------CEEEEETTEEEEECCBCCBC----
T ss_pred CEEEEEcCcC--CCCccceEEEEECCCCeEEECCCCCCcccc--------------eEEEEECCEEEEECCeeccCCCCc
Confidence 9999999987 344677899999999999999999999988 7889999999999984
Q ss_pred ------CCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcC
Q 043540 349 ------KEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGG 394 (437)
Q Consensus 349 ------~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG 394 (437)
.+++++||+++++|+++ +|.++. ++++++++++|||+..
T Consensus 271 ~~~~~~~~~v~~yd~~~~~W~~~--~~~~r~-----~~~~~~~~~~iyi~~~ 315 (318)
T 2woz_A 271 EFAPTEVNDIWKYEDDKKEWAGM--LKEIRY-----ASGASCLATRLNLFKL 315 (318)
T ss_dssp CCBCCBCCCEEEEETTTTEEEEE--ESCCGG-----GTTCEEEEEEEEGGGC
T ss_pred eeccceeeeEEEEeCCCCEehhh--cccccc-----cccceeeCCEEEEEEe
Confidence 35799999999999999 565554 3445678999999854
No 15
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=4.9e-33 Score=293.53 Aligned_cols=217 Identities=16% Similarity=0.207 Sum_probs=184.3
Q ss_pred EEeCCEEEEEcCc--cCCceEEEEECCCCceecCC-C-----CCCCccceeeEEE--CCEEEEEeccCCCCCCCceEEEE
Q 043540 181 LAVGTELLVFGKE--VHGNAIYRYNLLTNTWSTGM-T-----MNTPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELY 250 (437)
Q Consensus 181 ~~~~~~lyv~GG~--~~~~~v~~yd~~t~~W~~~~-~-----~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~y 250 (437)
+++++.||++||. ...+++++||+.+++|+.++ + +|.+|..|+++++ +++|||+||.+.....++++++|
T Consensus 394 ~~~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~y 473 (695)
T 2zwa_A 394 DVAGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIF 473 (695)
T ss_dssp EECSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEE
T ss_pred EEECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEE
Confidence 5589999999995 34578999999999999987 5 8899999999999 99999999998766578999999
Q ss_pred ECCCCcEEecCCCCcCCcCeeEEEE-CCEEEEEecccCCCCccCCeEEEEECCCCceEecCC---CCCcccCCCCccccc
Q 043540 251 NSITGTWMPISSMHKARKMCSGVFM-DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITD---MFPARIGSDGVSVIS 326 (437)
Q Consensus 251 d~~t~~W~~~~~~~~~r~~~~~~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~---~~~~~~~~~~~~~~~ 326 (437)
|+.+++|+.+++||.+|..|+++++ +++|||+||.... . ++++||+.+++|+.++. +|.+|.+
T Consensus 474 d~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~-~----~v~~yd~~t~~W~~~~~~g~~p~~r~~-------- 540 (695)
T 2zwa_A 474 DMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEG-P----AMLLYNVTEEIFKDVTPKDEFFQNSLV-------- 540 (695)
T ss_dssp ETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSS-C----SEEEEETTTTEEEECCCSSGGGGSCCB--------
T ss_pred eCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCC-C----CEEEEECCCCceEEccCCCCCCCcccc--------
Confidence 9999999999999999999999997 9999999998722 2 79999999999999986 8888888
Q ss_pred ccCCCCCEEEEEC---CEEEEEeCC-------CCeEEEEeCCCCc------EEEccCCC-CcccCCCcccEEEEEeC-CE
Q 043540 327 AAGEAPPLLAVVN---NELYAADHE-------KEEVRKFDKGRKL------WRTLGRLP-EQASSMNGWGLAFRACG-DQ 388 (437)
Q Consensus 327 ~~~~~~~~~~~~~---~~ly~~gg~-------~~~v~~yd~~~~~------W~~v~~lp-~~~~~~~~~~~a~~~~~-~~ 388 (437)
+++++++ ++||++||. .+++++||+.+++ |+.+..+| .++ +++++++++ ++
T Consensus 541 ------~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R-----~~~~~~~~~~~~ 609 (695)
T 2zwa_A 541 ------SAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQR-----YGSQIKYITPRK 609 (695)
T ss_dssp ------SCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCC-----BSCEEEEEETTE
T ss_pred ------eeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCc-----ccceEEEeCCCE
Confidence 5666766 899999985 3679999999999 99998764 333 356677888 99
Q ss_pred EEEEcCCCCCCCCeeEEEeeecCCCCCCceecC
Q 043540 389 LIVIGGPRDSGGGIVELNGWVPDEGPPHWKLLA 421 (437)
Q Consensus 389 l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~ 421 (437)
|||+||....+.......++.||+.+++|+.++
T Consensus 610 iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~ 642 (695)
T 2zwa_A 610 LLIVGGTSPSGLFDRTNSIISLDPLSETLTSIP 642 (695)
T ss_dssp EEEECCBCSSCCCCTTTSEEEEETTTTEEEECC
T ss_pred EEEECCccCCCCCCCCCeEEEEECCCCeEEEee
Confidence 999999864433233456888999999999653
No 16
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=1.2e-32 Score=290.67 Aligned_cols=258 Identities=12% Similarity=0.172 Sum_probs=204.8
Q ss_pred cCcchHHhhhhcCccccEEEEEecCceEEEeccCCCCeeeCC-C-----CCCccccccCCceeEEe--CCEEEEEcCcc-
Q 043540 124 QSGELYRLRREMGIIEHWVYFSCKLKEWEAFDPIHHRWMHLP-P-----MNASDCFMCADKESLAV--GTELLVFGKEV- 194 (437)
Q Consensus 124 ~s~~~y~~~~~~~~~~~~l~~~~~~~~~~~yDp~~~~W~~l~-~-----~p~~~~~~~~~~~~~~~--~~~lyv~GG~~- 194 (437)
.++.+|++||..+ . ..++++.||+.+++|..++ + +|.+|..+ +++++ +++|||+||..
T Consensus 396 ~~~~iyv~GG~~~-~--------~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~h----s~~~~~~~~~lyv~GG~~~ 462 (695)
T 2zwa_A 396 AGNDVFYMGGSNP-Y--------RVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCH----TFTTISRNNQLLLIGGRKA 462 (695)
T ss_dssp CSSCEEEECCBSS-S--------BCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSC----EEEEETTTTEEEEECCBSS
T ss_pred ECCEEEEECCCCC-C--------CcCcEEEEECCCCeEEEeccCCCCCCCCccccce----EEEEEccCCEEEEEcCCCC
Confidence 6788999999765 2 4578999999999999988 5 66777654 44888 99999999953
Q ss_pred ---CCceEEEEECCCCceecCCCCCCCccceeeEEE-CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCC---CCcCC
Q 043540 195 ---HGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL-GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISS---MHKAR 267 (437)
Q Consensus 195 ---~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~---~~~~r 267 (437)
..+++++||+.+++|+.+++||.+|..|+++++ +++|||+||.+... ++++||+.+++|+.++. +|.+|
T Consensus 463 ~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~W~~~~~~g~~p~~r 538 (695)
T 2zwa_A 463 PHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEEIFKDVTPKDEFFQNS 538 (695)
T ss_dssp TTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC----SEEEEETTTTEEEECCCSSGGGGSC
T ss_pred CCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC----CEEEEECCCCceEEccCCCCCCCcc
Confidence 357899999999999999999999999999997 99999999987653 89999999999999986 89999
Q ss_pred cCeeEEEEC---CEEEEEecccCCCCccCCeEEEEECCCCc------eEecCCC-CCcccCCCCcccccccCCCCCEEEE
Q 043540 268 KMCSGVFMD---GKFYVIGGIGEGSSAMLTDVEMYDLETGK------WTQITDM-FPARIGSDGVSVISAAGEAPPLLAV 337 (437)
Q Consensus 268 ~~~~~~~~~---g~lyv~GG~~~~~~~~~~~v~~yd~~~~~------W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (437)
..|++++++ ++|||+||....+...++++++||+.+++ |+.+.++ +.+|.+ +++++
T Consensus 539 ~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~--------------~~~~~ 604 (695)
T 2zwa_A 539 LVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYG--------------SQIKY 604 (695)
T ss_dssp CBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBS--------------CEEEE
T ss_pred cceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCccc--------------ceEEE
Confidence 999988877 99999999863334678899999999999 8998875 467777 78888
Q ss_pred EC-CEEEEEeCC--------CCeEEEEeCCCCcEEEccCCCCcc---cCCCcccEEEEEeCC-EEEEEcCCC-CCCCCee
Q 043540 338 VN-NELYAADHE--------KEEVRKFDKGRKLWRTLGRLPEQA---SSMNGWGLAFRACGD-QLIVIGGPR-DSGGGIV 403 (437)
Q Consensus 338 ~~-~~ly~~gg~--------~~~v~~yd~~~~~W~~v~~lp~~~---~~~~~~~~a~~~~~~-~l~v~GG~~-~~~~~~~ 403 (437)
++ ++||++||. .+++++||+.+++|+.+ .+|... ......+++++++++ +|||+||.. ...-++.
T Consensus 605 ~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~-~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~~cfsfGt~ 683 (695)
T 2zwa_A 605 ITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSI-PISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGATCYGFGSV 683 (695)
T ss_dssp EETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEEEC-CCCHHHHHHSCCCCSSCEEECC---CEEEECCEEECTTSCEE
T ss_pred eCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEEEe-eccccccCCCCccceeeeEEEeCCCEEEEEeCCccCcCcccc
Confidence 88 999999983 46899999999999965 344321 001123566666666 999999963 2222333
Q ss_pred EEEeeecCCC
Q 043540 404 ELNGWVPDEG 413 (437)
Q Consensus 404 ~~~~~~~d~~ 413 (437)
...+|.+|..
T Consensus 684 ~n~i~~ldl~ 693 (695)
T 2zwa_A 684 TNVGLKLIAI 693 (695)
T ss_dssp ECCCEEEEEC
T ss_pred ccceEEEEEE
Confidence 3377777643
No 17
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.98 E-value=2.9e-32 Score=286.86 Aligned_cols=268 Identities=15% Similarity=0.169 Sum_probs=202.5
Q ss_pred eEEEeccCCCCeeeCCCCCCccccccCCceeEEe--CCEEEEEcCccC---------CceEEEEECCCCceecCCCCCCC
Q 043540 150 EWEAFDPIHHRWMHLPPMNASDCFMCADKESLAV--GTELLVFGKEVH---------GNAIYRYNLLTNTWSTGMTMNTP 218 (437)
Q Consensus 150 ~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~--~~~lyv~GG~~~---------~~~v~~yd~~t~~W~~~~~~~~~ 218 (437)
.+.+|||.+++|..++++|.... .++.+ +++||++||... ...+++||+.+++|+.++.|+.+
T Consensus 167 ~~~~~dp~~~~W~~~~~~P~~~~------~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~ 240 (656)
T 1k3i_A 167 SYTAPQPGLGRWGPTIDLPIVPA------AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTK 240 (656)
T ss_dssp CCCCCCTTSCEEEEEEECSSCCS------EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECS
T ss_pred ccccCCCCCCeeeeeccCCCCce------eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCC
Confidence 58899999999999988876221 22444 999999998432 24789999999999999999888
Q ss_pred cccee--eE-EECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE-CCEEEEEecccCCCCccCC
Q 043540 219 RCLFG--SA-SLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM-DGKFYVIGGIGEGSSAMLT 294 (437)
Q Consensus 219 r~~~~--~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~g~lyv~GG~~~~~~~~~~ 294 (437)
|..++ ++ ..+++||++||++. .++++||+.+++|+++++|+.+|..|+++++ +|+|||+||.. .....++
T Consensus 241 ~~~~~~~~~~~~~g~lyv~GG~~~-----~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~-~~~~~~~ 314 (656)
T 1k3i_A 241 HDMFCPGISMDGNGQIVVTGGNDA-----KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSW-SGGVFEK 314 (656)
T ss_dssp CCCSSCEEEECTTSCEEEECSSST-----TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCC-CSSSCCC
T ss_pred CCCccccccCCCCCCEEEeCCCCC-----CceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcc-cCCcccc
Confidence 87764 33 35899999999754 3799999999999999999999999999999 99999999954 2345678
Q ss_pred eEEEEECCCCceEecC-----CCCCcccCCCCc------ccc--------------------c------------cc---
Q 043540 295 DVEMYDLETGKWTQIT-----DMFPARIGSDGV------SVI--------------------S------------AA--- 328 (437)
Q Consensus 295 ~v~~yd~~~~~W~~~~-----~~~~~~~~~~~~------~~~--------------------~------------~~--- 328 (437)
++++||+.+++|+.++ +++..+.. +.. +.+ + ..
T Consensus 315 ~~e~yd~~t~~W~~~~~~~~~p~~~~~~~-~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~ 393 (656)
T 1k3i_A 315 NGEVYSPSSKTWTSLPNAKVNPMLTADKQ-GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRG 393 (656)
T ss_dssp CEEEEETTTTEEEEETTSCSGGGCCCCTT-GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTE
T ss_pred cceEeCCCCCcceeCCCcccccccccccc-ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccc
Confidence 8999999999999973 34444321 000 000 0 00
Q ss_pred ---CCCCCEEEE---ECCEEEEEeCCC--------C---eEEEEeCCCCcEEEcc--CCCCcccCCCcccEEEEEe-CCE
Q 043540 329 ---GEAPPLLAV---VNNELYAADHEK--------E---EVRKFDKGRKLWRTLG--RLPEQASSMNGWGLAFRAC-GDQ 388 (437)
Q Consensus 329 ---~~~~~~~~~---~~~~ly~~gg~~--------~---~v~~yd~~~~~W~~v~--~lp~~~~~~~~~~~a~~~~-~~~ 388 (437)
....+.++. .+++||++||.. + .+++||+.+++|..+. .||.++. .++++++ +++
T Consensus 394 ~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~-----~~~~~~l~~g~ 468 (656)
T 1k3i_A 394 VAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFART-----FHTSVVLPDGS 468 (656)
T ss_dssp ECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCB-----SCEEEECTTSC
T ss_pred cCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcc-----cCCeEECCCCC
Confidence 001123332 489999999842 2 7899999999999986 8888775 2344455 999
Q ss_pred EEEEcCCCCCC---CCeeEEEeeecCCCCCCceecCccCCCceEeeeEEe
Q 043540 389 LIVIGGPRDSG---GGIVELNGWVPDEGPPHWKLLARQPMCGFVFNCTVM 435 (437)
Q Consensus 389 l~v~GG~~~~~---~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~v~ 435 (437)
|||+||..... +......++.||+.+++|+.++.+|.+|..|+++++
T Consensus 469 i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~l 518 (656)
T 1k3i_A 469 TFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLL 518 (656)
T ss_dssp EEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEE
T ss_pred EEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhc
Confidence 99999975321 223345678889999999999999999999998765
No 18
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.96 E-value=5.7e-29 Score=261.73 Aligned_cols=249 Identities=16% Similarity=0.161 Sum_probs=190.2
Q ss_pred CcchHHhhhhcCccccEEEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEEC
Q 043540 125 SGELYRLRREMGIIEHWVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNL 204 (437)
Q Consensus 125 s~~~y~~~~~~~~~~~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~ 204 (437)
++++|++||.......- .......++.||+.+++|..++.+|.++..+++ ..++..+++||++||... .++++||+
T Consensus 197 ~g~l~v~GG~~~~~~~~--~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~-~~~~~~~g~lyv~GG~~~-~~v~~yd~ 272 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGG--SPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCP-GISMDGNGQIVVTGGNDA-KKTSLYDS 272 (656)
T ss_dssp TTEEEEEEECCCTTTCS--CCCSEEEEEEECTTTCCBCCCEEEECSCCCSSC-EEEECTTSCEEEECSSST-TCEEEEEG
T ss_pred CCEEEEEeccccccccc--CCCCeEEEEEEeCCCCcEEeCcccCCCCCCccc-cccCCCCCCEEEeCCCCC-CceEEecC
Confidence 78888888764321000 000123578999999999999999888765542 122346899999999644 37999999
Q ss_pred CCCceecCCCCCCCccceeeEEE-CCEEEEEeccCCCCCCCceEEEEECCCCcEEecC-----CCCcCC-----------
Q 043540 205 LTNTWSTGMTMNTPRCLFGSASL-GEIAILAGGCDPRGKLLKSAELYNSITGTWMPIS-----SMHKAR----------- 267 (437)
Q Consensus 205 ~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~-----~~~~~r----------- 267 (437)
.+++|+++++|+.+|..|+++++ +++|||+||.......++++++||+.+++|+.++ +|+..|
T Consensus 273 ~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~i 352 (656)
T 1k3i_A 273 SSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHA 352 (656)
T ss_dssp GGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSC
T ss_pred cCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCce
Confidence 99999999999999999999999 9999999995444446889999999999999973 333221
Q ss_pred ----------------------------------------------cCeeEEE---ECCEEEEEecccC-CCCccCC---
Q 043540 268 ----------------------------------------------KMCSGVF---MDGKFYVIGGIGE-GSSAMLT--- 294 (437)
Q Consensus 268 ----------------------------------------------~~~~~~~---~~g~lyv~GG~~~-~~~~~~~--- 294 (437)
..++++. .+++||++||... .....++
T Consensus 353 yv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~ 432 (656)
T 1k3i_A 353 WLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAH 432 (656)
T ss_dssp CEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEE
T ss_pred EEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcce
Confidence 1223332 3899999999752 1223344
Q ss_pred eEEEEECCCCceEecC--CCCCcccCCCCcccccccCCCCCEEEEE-CCEEEEEeCC-----------CCeEEEEeCCCC
Q 043540 295 DVEMYDLETGKWTQIT--DMFPARIGSDGVSVISAAGEAPPLLAVV-NNELYAADHE-----------KEEVRKFDKGRK 360 (437)
Q Consensus 295 ~v~~yd~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ly~~gg~-----------~~~v~~yd~~~~ 360 (437)
.+++||+.+++|+.+. +||.+|.. +.++++ +|+||++||. ...+++||++++
T Consensus 433 ~v~~yd~~~~~W~~~~~~~mp~~R~~--------------~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~ 498 (656)
T 1k3i_A 433 IITLGEPGTSPNTVFASNGLYFARTF--------------HTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD 498 (656)
T ss_dssp EEECCSTTSCCEEEECTTCCSSCCBS--------------CEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred EEEcCCCCCCCeeEEccCCCCCCccc--------------CCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCC
Confidence 7899999999999986 89999988 677777 9999999984 257999999999
Q ss_pred cEEEccCCCCcccCCCcccEEEEEe--CCEEEEEcCCC
Q 043540 361 LWRTLGRLPEQASSMNGWGLAFRAC--GDQLIVIGGPR 396 (437)
Q Consensus 361 ~W~~v~~lp~~~~~~~~~~~a~~~~--~~~l~v~GG~~ 396 (437)
+|+.++.++.++.. ++++++ +++|||+||..
T Consensus 499 ~W~~~~~~~~~R~~-----hs~a~ll~dg~v~v~GG~~ 531 (656)
T 1k3i_A 499 TFYKQNPNSIVRVY-----HSISLLLPDGRVFNGGGGL 531 (656)
T ss_dssp EEEECCCCSSCCCT-----TEEEEECTTSCEEEEECCC
T ss_pred ceeecCCCCCcccc-----ccHhhcCCCcEEEecCCCC
Confidence 99999999888763 333344 89999999953
No 19
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.91 E-value=5.5e-07 Score=89.13 Aligned_cols=237 Identities=14% Similarity=0.140 Sum_probs=132.8
Q ss_pred CCCCCCCCHHHHHHHhhccCccchhhHHHHhHHHHHhhcCcchHHhh-hhc-----------------------------
Q 043540 86 NSLIPELGRDITINCLLRCSRSDYGAIASLNRAFRSLIQSGELYRLR-REM----------------------------- 135 (437)
Q Consensus 86 ~~~~~~LP~dl~~~~L~rlP~~~~~~~~~V~k~w~sli~s~~~y~~~-~~~----------------------------- 135 (437)
..++..||+|++..||..|+..++.+++.|||+|+.++.++.+.... ...
T Consensus 16 ~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~~~~~ 95 (445)
T 2ovr_B 16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIR 95 (445)
T ss_dssp CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHHHH
T ss_pred CChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeecccccccccccceecCCCccCCcHHHHHhh
Confidence 45678999999999999999999999999999999998776544311 000
Q ss_pred --------------------Cccc----------cEEEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCC
Q 043540 136 --------------------GIIE----------HWVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGT 185 (437)
Q Consensus 136 --------------------~~~~----------~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~ 185 (437)
+... .+++.......+..||..+.+-... +...... -..+...+
T Consensus 96 ~~~~~~~w~~~~~~~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~--~~~h~~~----v~~~~~~~ 169 (445)
T 2ovr_B 96 QHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT--LVGHTGG----VWSSQMRD 169 (445)
T ss_dssp HHHHHHHHHHSCCCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEE--CCCCSSC----EEEEEEET
T ss_pred hhhhhhcccCCCcceeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcEEEE--EcCCCCC----EEEEEecC
Confidence 0000 0111112234455666655443211 1111000 01122334
Q ss_pred EEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCc
Q 043540 186 ELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHK 265 (437)
Q Consensus 186 ~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~ 265 (437)
.+++.|+. ...+.+||..+++-... +........+...++..++.|+.+ ..+.+||..+++-... +..
T Consensus 170 ~~l~s~~~--dg~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~~~~--~~~ 237 (445)
T 2ovr_B 170 NIIISGST--DRTLKVWNAETGECIHT--LYGHTSTVRCMHLHEKRVVSGSRD------ATLRVWDIETGQCLHV--LMG 237 (445)
T ss_dssp TEEEEEET--TSCEEEEETTTTEEEEE--ECCCSSCEEEEEEETTEEEEEETT------SEEEEEESSSCCEEEE--EEC
T ss_pred CEEEEEeC--CCeEEEEECCcCcEEEE--ECCCCCcEEEEEecCCEEEEEeCC------CEEEEEECCCCcEEEE--EcC
Confidence 45555543 34688899887753321 111112223333455556666643 5688999887653221 112
Q ss_pred CCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEE
Q 043540 266 ARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAA 345 (437)
Q Consensus 266 ~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~ 345 (437)
.......+..+++.++.|+.+ ..+..||+.+.+-... +...... -..+.+++..++.
T Consensus 238 ~~~~v~~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~--~~~~~~~--------------v~~~~~~~~~l~~ 294 (445)
T 2ovr_B 238 HVAAVRCVQYDGRRVVSGAYD-------FMVKVWDPETETCLHT--LQGHTNR--------------VYSLQFDGIHVVS 294 (445)
T ss_dssp CSSCEEEEEECSSCEEEEETT-------SCEEEEEGGGTEEEEE--ECCCSSC--------------EEEEEECSSEEEE
T ss_pred CcccEEEEEECCCEEEEEcCC-------CEEEEEECCCCcEeEE--ecCCCCc--------------eEEEEECCCEEEE
Confidence 222334455588888887765 2488899877543221 1111111 1234458888888
Q ss_pred eCCCCeEEEEeCCCCcEE
Q 043540 346 DHEKEEVRKFDKGRKLWR 363 (437)
Q Consensus 346 gg~~~~v~~yd~~~~~W~ 363 (437)
|+..+.|.+||..+.+-.
T Consensus 295 ~~~d~~i~i~d~~~~~~~ 312 (445)
T 2ovr_B 295 GSLDTSIRVWDVETGNCI 312 (445)
T ss_dssp EETTSCEEEEETTTCCEE
T ss_pred EeCCCeEEEEECCCCCEE
Confidence 878888999999886543
No 20
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.77 E-value=1.1e-06 Score=86.91 Aligned_cols=272 Identities=12% Similarity=0.134 Sum_probs=146.7
Q ss_pred CCCCCCCHH----HHHHHhhccCccchhhHHHHhHHHHHhhcCcchHHhhhh----------------------------
Q 043540 87 SLIPELGRD----ITINCLLRCSRSDYGAIASLNRAFRSLIQSGELYRLRRE---------------------------- 134 (437)
Q Consensus 87 ~~~~~LP~d----l~~~~L~rlP~~~~~~~~~V~k~w~sli~s~~~y~~~~~---------------------------- 134 (437)
.++..||+| |+..||+.|+..++.++..|||+|+.++.++.+...--.
T Consensus 9 d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 88 (435)
T 1p22_A 9 DFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPP 88 (435)
T ss_dssp CHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHSSSGGGGCC-----
T ss_pred ChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCcchhhhhhhhccchhhhhhccCCC
Confidence 455679999 999999999999999999999999988876554321000
Q ss_pred -----------------------------cC------------cc---------ccEEEEEecCceEEEeccCCCCeeeC
Q 043540 135 -----------------------------MG------------II---------EHWVYFSCKLKEWEAFDPIHHRWMHL 164 (437)
Q Consensus 135 -----------------------------~~------------~~---------~~~l~~~~~~~~~~~yDp~~~~W~~l 164 (437)
.+ .. ..++........+..||..+.+-...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~ 168 (435)
T 1p22_A 89 DGNAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRI 168 (435)
T ss_dssp ----CCSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEE
T ss_pred CCCCCchhhHHhhhhhhhcchhHHHhhhccCCccceEEecccCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEE
Confidence 00 00 00111112234455566554432211
Q ss_pred CCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCC
Q 043540 165 PPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLL 244 (437)
Q Consensus 165 ~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 244 (437)
+... ...-..+..++.+++.|+. ...+.+||..+++-... +........+..+++..++.|+.+
T Consensus 169 --~~~h----~~~v~~l~~~~~~l~sg~~--dg~i~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~l~s~s~d------ 232 (435)
T 1p22_A 169 --LTGH----TGSVLCLQYDERVIITGSS--DSTVRVWDVNTGEMLNT--LIHHCEAVLHLRFNNGMMVTCSKD------ 232 (435)
T ss_dssp --ECCC----SSCEEEEECCSSEEEEEET--TSCEEEEESSSCCEEEE--ECCCCSCEEEEECCTTEEEEEETT------
T ss_pred --EcCC----CCcEEEEEECCCEEEEEcC--CCeEEEEECCCCcEEEE--EcCCCCcEEEEEEcCCEEEEeeCC------
Confidence 1100 0001113345666666643 34688889887754321 111122233344456666777654
Q ss_pred ceEEEEECCCCcEEec-CCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcc
Q 043540 245 KSAELYNSITGTWMPI-SSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVS 323 (437)
Q Consensus 245 ~~~~~yd~~t~~W~~~-~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~ 323 (437)
..+.+||..+..-... ..+........++..+++..+.|+.+ ..+..||+.+.+-... +......
T Consensus 233 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d-------g~i~vwd~~~~~~~~~--~~~~~~~----- 298 (435)
T 1p22_A 233 RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGD-------RTIKVWNTSTCEFVRT--LNGHKRG----- 298 (435)
T ss_dssp SCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETT-------SEEEEEETTTCCEEEE--EECCSSC-----
T ss_pred CcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCC-------CeEEEEECCcCcEEEE--EcCCCCc-----
Confidence 4678889877642111 11112222334444577777777654 3588999987643221 1111111
Q ss_pred cccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCee
Q 043540 324 VISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIV 403 (437)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~ 403 (437)
...+..++.+++.|+..+.|.+||..+.+-... +..... ....+..++..++.|+.+.
T Consensus 299 ---------v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~--~~~h~~-----~v~~~~~~~~~l~sg~~dg------ 356 (435)
T 1p22_A 299 ---------IACLQYRDRLVVSGSSDNTIRLWDIECGACLRV--LEGHEE-----LVRCIRFDNKRIVSGAYDG------ 356 (435)
T ss_dssp ---------EEEEEEETTEEEEEETTSCEEEEETTTCCEEEE--ECCCSS-----CEEEEECCSSEEEEEETTS------
T ss_pred ---------EEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEE--EeCCcC-----cEEEEEecCCEEEEEeCCC------
Confidence 123445677778887888899999987653322 111111 1223344777777776541
Q ss_pred EEEeeec
Q 043540 404 ELNGWVP 410 (437)
Q Consensus 404 ~~~~~~~ 410 (437)
.+.+|..
T Consensus 357 ~i~vwd~ 363 (435)
T 1p22_A 357 KIKVWDL 363 (435)
T ss_dssp CEEEEEH
T ss_pred cEEEEEC
Confidence 3566665
No 21
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.65 E-value=9e-06 Score=80.58 Aligned_cols=42 Identities=17% Similarity=0.221 Sum_probs=37.6
Q ss_pred CCCCCCCHHHHHHHhhccCccchhhHHHHhHHHHHhhcC-cch
Q 043540 87 SLIPELGRDITINCLLRCSRSDYGAIASLNRAFRSLIQS-GEL 128 (437)
Q Consensus 87 ~~~~~LP~dl~~~~L~rlP~~~~~~~~~V~k~w~sli~s-~~~ 128 (437)
.++..||+|++..||+.||..++.++..|||+|+.++.+ +.+
T Consensus 13 d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~ 55 (464)
T 3v7d_B 13 DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL 55 (464)
T ss_dssp CHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHH
T ss_pred CChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 456789999999999999999999999999999999987 543
No 22
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.56 E-value=3.9e-05 Score=72.78 Aligned_cols=223 Identities=10% Similarity=-0.060 Sum_probs=128.4
Q ss_pred ceEEEeccCCCCeeeCCCCC-CccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCce-ecCCCCCCCccceeeEE
Q 043540 149 KEWEAFDPIHHRWMHLPPMN-ASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTW-STGMTMNTPRCLFGSAS 226 (437)
Q Consensus 149 ~~~~~yDp~~~~W~~l~~~p-~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W-~~~~~~~~~r~~~~~~~ 226 (437)
..+..||+.+++...--... ...........++..++++|+... ..+.+.++|+.|.+- ..++....| ...+.
T Consensus 17 ~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~--~~~~v~viD~~t~~~~~~i~~~~~p---~~i~~ 91 (328)
T 3dsm_A 17 ATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVN--NSHVIFAIDINTFKEVGRITGFTSP---RYIHF 91 (328)
T ss_dssp BEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEG--GGTEEEEEETTTCCEEEEEECCSSE---EEEEE
T ss_pred ceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEc--CCCEEEEEECcccEEEEEcCCCCCC---cEEEE
Confidence 56888999998775311000 000000001234557899999863 246799999998876 334333222 33444
Q ss_pred -ECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCc----CCcCeeEEEECCEEEEEecccCCCCccCCeEEEEEC
Q 043540 227 -LGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHK----ARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDL 301 (437)
Q Consensus 227 -~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~----~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~ 301 (437)
-++++||.... ...+.++|+.+++-...-+... ......+++.++++||..-. ..+.+.++|+
T Consensus 92 ~~~g~lyv~~~~------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~------~~~~v~viD~ 159 (328)
T 3dsm_A 92 LSDEKAYVTQIW------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWS------YQNRILKIDT 159 (328)
T ss_dssp EETTEEEEEEBS------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECT------TCCEEEEEET
T ss_pred eCCCeEEEEECC------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCC------CCCEEEEEEC
Confidence 67899998642 2688999999987542111111 00223445578999998521 1246999999
Q ss_pred CCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCC----------CeEEEEeCCCCcEEEccCCCCc
Q 043540 302 ETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEK----------EEVRKFDKGRKLWRTLGRLPEQ 371 (437)
Q Consensus 302 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~----------~~v~~yd~~~~~W~~v~~lp~~ 371 (437)
++++....-....... ...+.-+|++|+..... ..|+++|+++.+....-.++..
T Consensus 160 ~t~~~~~~i~~g~~p~---------------~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g 224 (328)
T 3dsm_A 160 ETDKVVDELTIGIQPT---------------SLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLG 224 (328)
T ss_dssp TTTEEEEEEECSSCBC---------------CCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTT
T ss_pred CCCeEEEEEEcCCCcc---------------ceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCC
Confidence 9987643322111111 11233468999886432 6899999999886643334322
Q ss_pred ccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCc
Q 043540 372 ASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHW 417 (437)
Q Consensus 372 ~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W 417 (437)
.. ..+.++..-++.||+..+ .++++|..+.+.
T Consensus 225 ~~---p~~la~~~d~~~lyv~~~-----------~v~~~d~~t~~~ 256 (328)
T 3dsm_A 225 DW---PSEVQLNGTRDTLYWINN-----------DIWRMPVEADRV 256 (328)
T ss_dssp CC---CEEEEECTTSCEEEEESS-----------SEEEEETTCSSC
T ss_pred CC---ceeEEEecCCCEEEEEcc-----------EEEEEECCCCce
Confidence 11 123443333678898754 356677766654
No 23
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.50 E-value=7.1e-08 Score=65.40 Aligned_cols=45 Identities=7% Similarity=0.128 Sum_probs=38.9
Q ss_pred CCCCCCCCHHHHHHHhhccCccchhhHHHHhHHHHHhhcCcchHH
Q 043540 86 NSLIPELGRDITINCLLRCSRSDYGAIASLNRAFRSLIQSGELYR 130 (437)
Q Consensus 86 ~~~~~~LP~dl~~~~L~rlP~~~~~~~~~V~k~w~sli~s~~~y~ 130 (437)
...|..||+|++.+||.+||..++.+++.|||+|+.++.++.|+.
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~ 50 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQ 50 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC-
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHH
Confidence 456889999999999999999999999999999999999887653
No 24
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.46 E-value=2.9e-05 Score=69.96 Aligned_cols=189 Identities=19% Similarity=0.091 Sum_probs=122.9
Q ss_pred eeEEeCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEE
Q 043540 179 ESLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWM 258 (437)
Q Consensus 179 ~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~ 258 (437)
.+...++.||+-.|....+.+.++|+.|++-..--+++..-...+.+..+++||+.... .+.+++||+.|.+-.
T Consensus 25 GL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~------~~~v~v~D~~tl~~~ 98 (243)
T 3mbr_X 25 GLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWR------NHEGFVYDLATLTPR 98 (243)
T ss_dssp EEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS------SSEEEEEETTTTEEE
T ss_pred cEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEee------CCEEEEEECCcCcEE
Confidence 34566889999888766678999999999876554555544556778889999998542 378999999886532
Q ss_pred ecCCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceE-ecC--CCCCcccCCCCcccccccCCCCCEE
Q 043540 259 PISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWT-QIT--DMFPARIGSDGVSVISAAGEAPPLL 335 (437)
Q Consensus 259 ~~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (437)
...+.+....+.+.-+++||+.-|. +.+..+|+++.+-. .+. .-+.+... ..-+
T Consensus 99 --~ti~~~~~Gwglt~dg~~L~vSdgs--------~~l~~iDp~t~~~~~~I~V~~~g~~~~~-------------lNeL 155 (243)
T 3mbr_X 99 --ARFRYPGEGWALTSDDSHLYMSDGT--------AVIRKLDPDTLQQVGSIKVTAGGRPLDN-------------LNEL 155 (243)
T ss_dssp --EEEECSSCCCEEEECSSCEEEECSS--------SEEEEECTTTCCEEEEEECEETTEECCC-------------EEEE
T ss_pred --EEEeCCCCceEEeeCCCEEEEECCC--------CeEEEEeCCCCeEEEEEEEccCCccccc-------------ceee
Confidence 2333333455555556778887653 36899999987542 222 11111111 0124
Q ss_pred EEECCEEEEEeCCCCeEEEEeCCCCc---EEEccCCCCcc------cCCCcccEEEEEeCCEEEEEcCCC
Q 043540 336 AVVNNELYAADHEKEEVRKFDKGRKL---WRTLGRLPEQA------SSMNGWGLAFRACGDQLIVIGGPR 396 (437)
Q Consensus 336 ~~~~~~ly~~gg~~~~v~~yd~~~~~---W~~v~~lp~~~------~~~~~~~~a~~~~~~~l~v~GG~~ 396 (437)
...+|+||+--...+.|.+.|+++++ |..++.+.... ...---|.|...-+++|||.|-.-
T Consensus 156 e~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~w 225 (243)
T 3mbr_X 156 EWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRW 225 (243)
T ss_dssp EEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTC
T ss_pred EEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCC
Confidence 45699999887778999999999986 44444332111 000012456555578999999654
No 25
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.22 E-value=7.1e-05 Score=68.01 Aligned_cols=189 Identities=12% Similarity=-0.022 Sum_probs=117.2
Q ss_pred EEeCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEec
Q 043540 181 LAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPI 260 (437)
Q Consensus 181 ~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 260 (437)
...++.||+-.|....+.+.++|+.|++-..--+++..-...+.+..+++||+.... .+.+.+||+++.+-..
T Consensus 49 ~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~------~~~v~v~D~~t~~~~~- 121 (262)
T 3nol_A 49 FYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWK------NGLGFVWNIRNLRQVR- 121 (262)
T ss_dssp EEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS------SSEEEEEETTTCCEEE-
T ss_pred EEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEee------CCEEEEEECccCcEEE-
Confidence 445889999887655678999999998765443444333345678889999999542 3789999999876432
Q ss_pred CCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceE-ecCCCCCcccCCCCcccccccCCCCCEEEEEC
Q 043540 261 SSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWT-QITDMFPARIGSDGVSVISAAGEAPPLLAVVN 339 (437)
Q Consensus 261 ~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (437)
..+.+..+.+.+.-++.||+.-|. +.+..+|+++.+-. .+.--..++.. ....-+...+
T Consensus 122 -ti~~~~eG~glt~dg~~L~~SdGs--------~~i~~iDp~T~~v~~~I~V~~~g~~~-----------~~lNELe~~~ 181 (262)
T 3nol_A 122 -SFNYDGEGWGLTHNDQYLIMSDGT--------PVLRFLDPESLTPVRTITVTAHGEEL-----------PELNELEWVD 181 (262)
T ss_dssp -EEECSSCCCCEEECSSCEEECCSS--------SEEEEECTTTCSEEEEEECEETTEEC-----------CCEEEEEEET
T ss_pred -EEECCCCceEEecCCCEEEEECCC--------CeEEEEcCCCCeEEEEEEeccCCccc-----------cccceeEEEC
Confidence 222223444455556678886542 46999999986542 22211111110 0000144569
Q ss_pred CEEEEEeCCCCeEEEEeCCCCcE---EEccCCCCcc-----cCCCcccEEEEEeCCEEEEEcCCC
Q 043540 340 NELYAADHEKEEVRKFDKGRKLW---RTLGRLPEQA-----SSMNGWGLAFRACGDQLIVIGGPR 396 (437)
Q Consensus 340 ~~ly~~gg~~~~v~~yd~~~~~W---~~v~~lp~~~-----~~~~~~~~a~~~~~~~l~v~GG~~ 396 (437)
|+||+--...+.|.+.|+++.+= ..++.+.... ...---|.|+..-+++|||.|-.-
T Consensus 182 G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~W 246 (262)
T 3nol_A 182 GEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLW 246 (262)
T ss_dssp TEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTC
T ss_pred CEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCC
Confidence 99998877789999999999874 3443332111 000012466655678999999654
No 26
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.18 E-value=0.00073 Score=63.83 Aligned_cols=191 Identities=10% Similarity=-0.048 Sum_probs=112.1
Q ss_pred CceEEEEECCCCceecC-----CCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcE-EecCCCCcCCcC
Q 043540 196 GNAIYRYNLLTNTWSTG-----MTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTW-MPISSMHKARKM 269 (437)
Q Consensus 196 ~~~v~~yd~~t~~W~~~-----~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W-~~~~~~~~~r~~ 269 (437)
...+.++|+.|+++..- ...+.......++..++++|+.... .+.+.++|+.+.+- ..++... ..
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~------~~~v~viD~~t~~~~~~i~~~~---~p 86 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNN------SHVIFAIDINTFKEVGRITGFT---SP 86 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGG------GTEEEEEETTTCCEEEEEECCS---SE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcC------CCEEEEEECcccEEEEEcCCCC---CC
Confidence 46799999999987642 1122233335566789999999753 26799999998876 3343222 22
Q ss_pred eeEEE-ECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeC-
Q 043540 270 CSGVF-MDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADH- 347 (437)
Q Consensus 270 ~~~~~-~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg- 347 (437)
...++ -++++|+..... ..+.++|+.+++-...-+....... ...+..++..+++||+.+.
T Consensus 87 ~~i~~~~~g~lyv~~~~~-------~~v~~iD~~t~~~~~~i~~g~~~~~----------~~~p~~i~~~~~~lyv~~~~ 149 (328)
T 3dsm_A 87 RYIHFLSDEKAYVTQIWD-------YRIFIINPKTYEITGYIECPDMDME----------SGSTEQMVQYGKYVYVNCWS 149 (328)
T ss_dssp EEEEEEETTEEEEEEBSC-------SEEEEEETTTTEEEEEEECTTCCTT----------TCBCCCEEEETTEEEEEECT
T ss_pred cEEEEeCCCeEEEEECCC-------CeEEEEECCCCeEEEEEEcCCcccc----------CCCcceEEEECCEEEEEcCC
Confidence 33444 689999987432 4699999998875432112110000 0011345568999999985
Q ss_pred CCCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCC--eeEEEeeecCCCCCCce
Q 043540 348 EKEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGG--IVELNGWVPDEGPPHWK 418 (437)
Q Consensus 348 ~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~--~~~~~~~~~d~~~~~W~ 418 (437)
..+.|.++|+++++....-.....+. +.++ .-++++|+.......... .....++++|+.+.+..
T Consensus 150 ~~~~v~viD~~t~~~~~~i~~g~~p~-----~i~~-~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~ 216 (328)
T 3dsm_A 150 YQNRILKIDTETDKVVDELTIGIQPT-----SLVM-DKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVE 216 (328)
T ss_dssp TCCEEEEEETTTTEEEEEEECSSCBC-----CCEE-CTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEE
T ss_pred CCCEEEEEECCCCeEEEEEEcCCCcc-----ceEE-cCCCCEEEEECCCccCCccccCCceEEEEECCCCeEE
Confidence 47899999999987654322222211 2332 346788887532210000 00124566677666543
No 27
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.02 E-value=0.00018 Score=65.41 Aligned_cols=183 Identities=11% Similarity=-0.040 Sum_probs=114.1
Q ss_pred eEEeCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEe
Q 043540 180 SLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMP 259 (437)
Q Consensus 180 ~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 259 (437)
+...++.||+-.|... .+.++|+.|++-..-- ++..-...+.+..+++||+.... .+.+++||+++.+-.
T Consensus 60 L~~~~~~Ly~stG~~g--~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~------~~~v~V~D~~Tl~~~- 129 (268)
T 3nok_A 60 LVFHQGHFFESTGHQG--TLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWT------EGLLFTWSGMPPQRE- 129 (268)
T ss_dssp EEEETTEEEEEETTTT--EEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESS------SCEEEEEETTTTEEE-
T ss_pred EEEECCEEEEEcCCCC--EEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEcc------CCEEEEEECCcCcEE-
Confidence 3456889999877543 3899999998754322 44333334577889999998542 378999999887543
Q ss_pred cCCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEe-cC--CCCCcccCCCCcccccccCCCCCEEE
Q 043540 260 ISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQ-IT--DMFPARIGSDGVSVISAAGEAPPLLA 336 (437)
Q Consensus 260 ~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (437)
...+.+....+.+.-+++||+.-|. +.+..+|+++.+-.. +. .-+.+... ..-+.
T Consensus 130 -~ti~~~~eGwGLt~Dg~~L~vSdGs--------~~l~~iDp~T~~v~~~I~V~~~g~~v~~-------------lNeLe 187 (268)
T 3nok_A 130 -RTTRYSGEGWGLCYWNGKLVRSDGG--------TMLTFHEPDGFALVGAVQVKLRGQPVEL-------------INELE 187 (268)
T ss_dssp -EEEECSSCCCCEEEETTEEEEECSS--------SEEEEECTTTCCEEEEEECEETTEECCC-------------EEEEE
T ss_pred -EEEeCCCceeEEecCCCEEEEECCC--------CEEEEEcCCCCeEEEEEEeCCCCccccc-------------ccccE
Confidence 2222233445666668889998653 369999999875432 21 11111111 01234
Q ss_pred EECCEEEEEeCCCCeEEEEeCCCCc---EEEccCCCC--------cccCCCcccEEEEEeCCEEEEEcCCC
Q 043540 337 VVNNELYAADHEKEEVRKFDKGRKL---WRTLGRLPE--------QASSMNGWGLAFRACGDQLIVIGGPR 396 (437)
Q Consensus 337 ~~~~~ly~~gg~~~~v~~yd~~~~~---W~~v~~lp~--------~~~~~~~~~~a~~~~~~~l~v~GG~~ 396 (437)
..+|+||+--...+.|.+.|+++++ |..++.+.. ..... -|.|...-+++|||.|-.-
T Consensus 188 ~~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vl--NGIA~dp~~~rlfVTGK~W 256 (268)
T 3nok_A 188 CANGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVL--NGIAVEPGSGRIFMTGKLW 256 (268)
T ss_dssp EETTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCE--EEEEECTTTCCEEEEETTC
T ss_pred EeCCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCce--EEEEEcCCCCEEEEeCCCC
Confidence 5699999877778899999999986 444432210 11111 1455544468999998654
No 28
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.98 E-value=0.0057 Score=58.51 Aligned_cols=202 Identities=14% Similarity=0.208 Sum_probs=117.8
Q ss_pred cEEEEEecCceEEEeccCCCC--eeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCc--eecCCCC
Q 043540 140 HWVYFSCKLKEWEAFDPIHHR--WMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNT--WSTGMTM 215 (437)
Q Consensus 140 ~~l~~~~~~~~~~~yDp~~~~--W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~--W~~~~~~ 215 (437)
..+|+......+.++|+.+++ |..-.. .... ...+..++.+|+... ...++.+|+.|++ |+.-...
T Consensus 104 ~~v~v~~~~g~l~a~d~~tG~~~W~~~~~--~~~~-----~~p~~~~~~v~v~~~---~g~l~~~d~~tG~~~W~~~~~~ 173 (376)
T 3q7m_A 104 GHVYIGSEKAQVYALNTSDGTVAWQTKVA--GEAL-----SRPVVSDGLVLIHTS---NGQLQALNEADGAVKWTVNLDM 173 (376)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECS--SCCC-----SCCEEETTEEEEECT---TSEEEEEETTTCCEEEEEECCC
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEEeCC--CceE-----cCCEEECCEEEEEcC---CCeEEEEECCCCcEEEEEeCCC
Confidence 345555555778999998774 754221 1111 112556788887542 3479999998875 7754322
Q ss_pred CC--CccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCc--EEecCCCCcCC--------cCeeEEEECCEEEEEe
Q 043540 216 NT--PRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGT--WMPISSMHKAR--------KMCSGVFMDGKFYVIG 283 (437)
Q Consensus 216 ~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~r--------~~~~~~~~~g~lyv~G 283 (437)
+. .+.....++.++.+|+. .. ...+..||+.+++ |+.-...+... .....++.++.+|+.+
T Consensus 174 ~~~~~~~~~~~~~~~~~v~~g-~~------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~ 246 (376)
T 3q7m_A 174 PSLSLRGESAPTTAFGAAVVG-GD------NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALA 246 (376)
T ss_dssp -----CCCCCCEEETTEEEEC-CT------TTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEEC
T ss_pred CceeecCCCCcEEECCEEEEE-cC------CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEe
Confidence 11 12223445567777763 21 2468899998876 87643322111 2234456789999875
Q ss_pred cccCCCCccCCeEEEEECCCCc--eEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCc
Q 043540 284 GIGEGSSAMLTDVEMYDLETGK--WTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKL 361 (437)
Q Consensus 284 G~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~ 361 (437)
.. ..+.++|+.+++ |+.-.. . . ...++.++.||+... ...+++||+.+.+
T Consensus 247 ~~--------g~l~~~d~~tG~~~w~~~~~--~---~--------------~~~~~~~~~l~~~~~-~g~l~~~d~~tG~ 298 (376)
T 3q7m_A 247 YN--------GNLTALDLRSGQIMWKRELG--S---V--------------NDFIVDGNRIYLVDQ-NDRVMALTIDGGV 298 (376)
T ss_dssp TT--------SCEEEEETTTCCEEEEECCC--C---E--------------EEEEEETTEEEEEET-TCCEEEEETTTCC
T ss_pred cC--------cEEEEEECCCCcEEeeccCC--C---C--------------CCceEECCEEEEEcC-CCeEEEEECCCCc
Confidence 32 248899998774 764311 1 1 235667899998864 4579999998765
Q ss_pred --EEEccCCCCcccCCCcccEEEEEeCCEEEEEc
Q 043540 362 --WRTLGRLPEQASSMNGWGLAFRACGDQLIVIG 393 (437)
Q Consensus 362 --W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~G 393 (437)
|+.-. ++.... .+.+..+++||+..
T Consensus 299 ~~w~~~~-~~~~~~------~~~~~~~~~l~v~~ 325 (376)
T 3q7m_A 299 TLWTQSD-LLHRLL------TSPVLYNGNLVVGD 325 (376)
T ss_dssp EEEEECT-TTTSCC------CCCEEETTEEEEEC
T ss_pred EEEeecc-cCCCcc------cCCEEECCEEEEEe
Confidence 76531 221111 12335688888764
No 29
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.97 E-value=0.0011 Score=60.72 Aligned_cols=183 Identities=15% Similarity=0.025 Sum_probs=110.4
Q ss_pred CEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCC
Q 043540 185 TELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMH 264 (437)
Q Consensus 185 ~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~ 264 (437)
+.||+..|....+.+.++|+.|++=..--+++......+.+..++++|+..-. .+.+.+||+.+.+= +..++
T Consensus 32 g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~------~~~v~viD~~t~~v--~~~i~ 103 (266)
T 2iwa_A 32 DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWL------KNIGFIYDRRTLSN--IKNFT 103 (266)
T ss_dssp TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETT------CSEEEEEETTTTEE--EEEEE
T ss_pred CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEec------CCEEEEEECCCCcE--EEEEE
Confidence 78999876555678999999998755433333333345667778999999542 37899999987642 22222
Q ss_pred cC-CcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceE-ecC--CCCCcccCCCCcccccccCCCCCEEEEECC
Q 043540 265 KA-RKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWT-QIT--DMFPARIGSDGVSVISAAGEAPPLLAVVNN 340 (437)
Q Consensus 265 ~~-r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (437)
.+ ....+.+.-++++|+..| .+.+..+|+++.+=. .++ .-+.+... +..+...++
T Consensus 104 ~g~~~g~glt~Dg~~l~vs~g--------s~~l~viD~~t~~v~~~I~Vg~~~~p~~~-------------~nele~~dg 162 (266)
T 2iwa_A 104 HQMKDGWGLATDGKILYGSDG--------TSILYEIDPHTFKLIKKHNVKYNGHRVIR-------------LNELEYING 162 (266)
T ss_dssp CCSSSCCEEEECSSSEEEECS--------SSEEEEECTTTCCEEEEEECEETTEECCC-------------EEEEEEETT
T ss_pred CCCCCeEEEEECCCEEEEECC--------CCeEEEEECCCCcEEEEEEECCCCccccc-------------ceeEEEECC
Confidence 22 223333333567888654 246999999886532 222 11111111 012344599
Q ss_pred EEEEEeCCCCeEEEEeCCCCc---EEEccCCCC------cccCCCcccEEEEEeCCEEEEEcCCC
Q 043540 341 ELYAADHEKEEVRKFDKGRKL---WRTLGRLPE------QASSMNGWGLAFRACGDQLIVIGGPR 396 (437)
Q Consensus 341 ~ly~~gg~~~~v~~yd~~~~~---W~~v~~lp~------~~~~~~~~~~a~~~~~~~l~v~GG~~ 396 (437)
+||+--...+.|.+.|+++++ |..++.+.. ......-.|.++..-++++||.|+..
T Consensus 163 ~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~ 227 (266)
T 2iwa_A 163 EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLW 227 (266)
T ss_dssp EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTC
T ss_pred EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCC
Confidence 999887778899999999976 333331100 00000112566555568999999765
No 30
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.94 E-value=0.0044 Score=59.30 Aligned_cols=204 Identities=10% Similarity=0.104 Sum_probs=115.7
Q ss_pred EEEEEecCceEEEeccCCCC--eeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCc--eecCCCCC
Q 043540 141 WVYFSCKLKEWEAFDPIHHR--WMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNT--WSTGMTMN 216 (437)
Q Consensus 141 ~l~~~~~~~~~~~yDp~~~~--W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~--W~~~~~~~ 216 (437)
.+|+......+.+||+.+++ |..-...+.... ......+..++.+|+-. ....++.+|+.+++ |+.-...+
T Consensus 145 ~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~--~~~~~~~~~~~~v~~g~---~~g~l~~~d~~tG~~~w~~~~~~~ 219 (376)
T 3q7m_A 145 LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSL--RGESAPTTAFGAAVVGG---DNGRVSAVLMEQGQMIWQQRISQA 219 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC-------CCCCCCEEETTEEEECC---TTTEEEEEETTTCCEEEEEECCC-
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceee--cCCCCcEEECCEEEEEc---CCCEEEEEECCCCcEEEEEecccC
Confidence 34554455678999998775 865332111100 00112245577777632 23468999998764 66432222
Q ss_pred CCc--------cceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCc--EEecCCCCcCCcCeeEEEECCEEEEEeccc
Q 043540 217 TPR--------CLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGT--WMPISSMHKARKMCSGVFMDGKFYVIGGIG 286 (437)
Q Consensus 217 ~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~g~lyv~GG~~ 286 (437)
... .....+..++.+|+.+. ...+..+|+.+++ |+.-.. .....+..++.||+.....
T Consensus 220 ~~~~~~~~~~~~~~~p~~~~~~v~~~~~-------~g~l~~~d~~tG~~~w~~~~~-----~~~~~~~~~~~l~~~~~~g 287 (376)
T 3q7m_A 220 TGSTEIDRLSDVDTTPVVVNGVVFALAY-------NGNLTALDLRSGQIMWKRELG-----SVNDFIVDGNRIYLVDQND 287 (376)
T ss_dssp ----------CCCCCCEEETTEEEEECT-------TSCEEEEETTTCCEEEEECCC-----CEEEEEEETTEEEEEETTC
T ss_pred CCCcccccccccCCCcEEECCEEEEEec-------CcEEEEEECCCCcEEeeccCC-----CCCCceEECCEEEEEcCCC
Confidence 111 12334456888888642 2467899998875 875421 1234556689999975432
Q ss_pred CCCCccCCeEEEEECCCCc--eEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCc--E
Q 043540 287 EGSSAMLTDVEMYDLETGK--WTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKL--W 362 (437)
Q Consensus 287 ~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~--W 362 (437)
.+.+||+.+++ |+.-. +.... . ...++.++.||+... ...+++||+++.+ |
T Consensus 288 --------~l~~~d~~tG~~~w~~~~-~~~~~-~--------------~~~~~~~~~l~v~~~-~g~l~~~d~~tG~~~~ 342 (376)
T 3q7m_A 288 --------RVMALTIDGGVTLWTQSD-LLHRL-L--------------TSPVLYNGNLVVGDS-EGYLHWINVEDGRFVA 342 (376)
T ss_dssp --------CEEEEETTTCCEEEEECT-TTTSC-C--------------CCCEEETTEEEEECT-TSEEEEEETTTCCEEE
T ss_pred --------eEEEEECCCCcEEEeecc-cCCCc-c--------------cCCEEECCEEEEEeC-CCeEEEEECCCCcEEE
Confidence 48999998876 76531 11111 1 124557899988753 4579999998876 5
Q ss_pred EEccCCCCcccCCCcccEEEEEeCCEEEEEc
Q 043540 363 RTLGRLPEQASSMNGWGLAFRACGDQLIVIG 393 (437)
Q Consensus 363 ~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~G 393 (437)
+.- ++.... ....+..+++||+..
T Consensus 343 ~~~--~~~~~~-----~~~~~~~~~~l~v~~ 366 (376)
T 3q7m_A 343 QQK--VDSSGF-----QTEPVAADGKLLIQA 366 (376)
T ss_dssp EEE--CCTTCB-----CSCCEEETTEEEEEB
T ss_pred EEe--cCCCcc-----eeCCEEECCEEEEEe
Confidence 532 211111 122345688998875
No 31
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.92 E-value=4.2e-06 Score=77.41 Aligned_cols=47 Identities=15% Similarity=0.265 Sum_probs=42.9
Q ss_pred CCCCCCCCHHHHHHHhhccCccchh-hHHHHhHHHHHhhcCcchHHhh
Q 043540 86 NSLIPELGRDITINCLLRCSRSDYG-AIASLNRAFRSLIQSGELYRLR 132 (437)
Q Consensus 86 ~~~~~~LP~dl~~~~L~rlP~~~~~-~~~~V~k~w~sli~s~~~y~~~ 132 (437)
...+..||+||+++||+|||..++. ++++|||+|+.|+.++.|....
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~ 95 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLK 95 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHH
T ss_pred ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHH
Confidence 4578899999999999999999999 9999999999999999887554
No 32
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.88 E-value=0.00087 Score=60.23 Aligned_cols=120 Identities=18% Similarity=0.070 Sum_probs=84.1
Q ss_pred CCCCccce--eeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEECCEEEEEecccCCCCcc
Q 043540 215 MNTPRCLF--GSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAM 292 (437)
Q Consensus 215 ~~~~r~~~--~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~ 292 (437)
.|+....| +....++.+|+..|..+. +.+.++|+++++=..--.++..-...+.+..+++||++....
T Consensus 15 ~phd~~~ftqGL~~~~~~LyestG~~g~----S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~------ 84 (243)
T 3mbr_X 15 YPHDTTAFTEGLFYLRGHLYESTGETGR----SSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRN------ 84 (243)
T ss_dssp EECCTTCCEEEEEEETTEEEEEECCTTS----CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSS------
T ss_pred cCCCCccccccEEEECCEEEEECCCCCC----ceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeC------
Confidence 34444444 677778999999886533 789999999998655545555445566778899999996543
Q ss_pred CCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCcE
Q 043540 293 LTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKLW 362 (437)
Q Consensus 293 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~W 362 (437)
+.+++||+++.+-. ..++.+..+ -+++.-+++||+-.| .+.|+.+|+++.+-
T Consensus 85 -~~v~v~D~~tl~~~--~ti~~~~~G--------------wglt~dg~~L~vSdg-s~~l~~iDp~t~~~ 136 (243)
T 3mbr_X 85 -HEGFVYDLATLTPR--ARFRYPGEG--------------WALTSDDSHLYMSDG-TAVIRKLDPDTLQQ 136 (243)
T ss_dssp -SEEEEEETTTTEEE--EEEECSSCC--------------CEEEECSSCEEEECS-SSEEEEECTTTCCE
T ss_pred -CEEEEEECCcCcEE--EEEeCCCCc--------------eEEeeCCCEEEEECC-CCeEEEEeCCCCeE
Confidence 56999999886532 222222223 345666778999887 78899999998654
No 33
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=97.73 E-value=0.0052 Score=55.42 Aligned_cols=179 Identities=12% Similarity=-0.039 Sum_probs=93.8
Q ss_pred CceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEE
Q 043540 148 LKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL 227 (437)
Q Consensus 148 ~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 227 (437)
...+..||+.+.....++...... ... ..+.-++.||+... ...+++||+.++......... ...-.+++.-
T Consensus 45 ~~~i~~~~~~~~~~~~~~~~~~~~-p~~---i~~~~~g~l~v~~~---~~~i~~~d~~~~~~~~~~~~~-~~~p~~i~~~ 116 (270)
T 1rwi_B 45 YGRVVKLATGSTGTTVLPFNGLYQ-PQG---LAVDGAGTVYVTDF---NNRVVTLAAGSNNQTVLPFDG-LNYPEGLAVD 116 (270)
T ss_dssp SCEEEEECC-----EECCCCSCCS-CCC---EEECTTCCEEEEET---TTEEEEECTTCSCCEECCCCS-CSSEEEEEEC
T ss_pred CCcEEEecCCCcccceEeeCCcCC-cce---eEECCCCCEEEEcC---CCEEEEEeCCCceEeeeecCC-cCCCcceEEC
Confidence 355777888766554433211111 000 11222567888753 457999999877654442211 1111233333
Q ss_pred -CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE-CCEEEEEecccCCCCccCCeEEEEECCCCc
Q 043540 228 -GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM-DGKFYVIGGIGEGSSAMLTDVEMYDLETGK 305 (437)
Q Consensus 228 -~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~ 305 (437)
++++|+.... ...+.+||..+........... ......++. +|+||+..... ..+..||+.+..
T Consensus 117 ~~g~l~v~~~~------~~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~~~-------~~i~~~~~~~~~ 182 (270)
T 1rwi_B 117 TQGAVYVADRG------NNRVVKLAAGSKTQTVLPFTGL-NDPDGVAVDNSGNVYVTDTDN-------NRVVKLEAESNN 182 (270)
T ss_dssp TTCCEEEEEGG------GTEEEEECTTCCSCEECCCCSC-CSCCCEEECTTCCEEEEEGGG-------TEEEEECTTTCC
T ss_pred CCCCEEEEECC------CCEEEEEECCCceeEeeccccC-CCceeEEEeCCCCEEEEECCC-------CEEEEEecCCCc
Confidence 5788887543 2567888877665443321111 112223333 68899875432 358999988765
Q ss_pred eEecCCCCCcccCCCCcccccccCCCCCEEEEE-CCEEEEEeCCCCeEEEEeCCCCcEE
Q 043540 306 WTQITDMFPARIGSDGVSVISAAGEAPPLLAVV-NNELYAADHEKEEVRKFDKGRKLWR 363 (437)
Q Consensus 306 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ly~~gg~~~~v~~yd~~~~~W~ 363 (437)
-...... .... +..++.. +|.||+.....+.|.+||+.+..-.
T Consensus 183 ~~~~~~~--~~~~-------------p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~ 226 (270)
T 1rwi_B 183 QVVLPFT--DITA-------------PWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST 226 (270)
T ss_dssp EEECCCS--SCCS-------------EEEEEECTTCCEEEEETTTSCEEEECTTCSCCE
T ss_pred eEeeccc--CCCC-------------ceEEEECCCCCEEEEECCCCcEEEEcCCCCcce
Confidence 4433211 1111 0233333 5689999877788999999876533
No 34
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=97.71 E-value=0.022 Score=53.27 Aligned_cols=208 Identities=9% Similarity=0.002 Sum_probs=107.3
Q ss_pred CceEEEeccCCCCeeeCCCCCCccccccCCceeEEeC-CEEEEEcCccCCceEEEEECCCCceecCCCCCCC--------
Q 043540 148 LKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVG-TELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTP-------- 218 (437)
Q Consensus 148 ~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~-~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~-------- 218 (437)
...+..+|+.+.+-...-+...... ...+.-+ +.+|+.+.. ...++++|+.+++-...-+....
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~~~~~~-----~~~~s~dg~~l~v~~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~ 140 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHNDLKPF-----GATINNTTQTLWFGNTV--NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRP 140 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCC-----SEEEETTTTEEEEEETT--TTEEEEEETTTCCEEEEEESCCCCCCSSCCC
T ss_pred CccEEEEcCCCCeEEEEEecCCCcc-----eEEECCCCCEEEEEecC--CCEEEEEeCCCCeeEEEEecCCCccccccCC
Confidence 3468899998876433211111111 1112333 457777542 35799999988764322111111
Q ss_pred ccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE-CC-EEEEEecccCCCCccCC
Q 043540 219 RCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM-DG-KFYVIGGIGEGSSAMLT 294 (437)
Q Consensus 219 r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~g-~lyv~GG~~~~~~~~~~ 294 (437)
.....++.- ++.+|+.+... ...+.+||+.+.+-...-... .......++. +| .+|+... + .
T Consensus 141 ~~~~~~~~s~dg~~l~~~~~~~-----~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~-~-------~ 206 (353)
T 3vgz_A 141 LQPRELVADDATNTVYISGIGK-----ESVIWVVDGGNIKLKTAIQNT-GKMSTGLALDSEGKRLYTTNA-D-------G 206 (353)
T ss_dssp CEEEEEEEETTTTEEEEEEESS-----SCEEEEEETTTTEEEEEECCC-CTTCCCCEEETTTTEEEEECT-T-------S
T ss_pred CCCceEEECCCCCEEEEEecCC-----CceEEEEcCCCCceEEEecCC-CCccceEEECCCCCEEEEEcC-C-------C
Confidence 111223332 45677776321 256899999887643221111 1112223333 44 5666543 2 3
Q ss_pred eEEEEECCCCceEecCCCCCc-ccCCCCcccccccCCCCCEEEEE--CCEEEEEeCCCCeEEEEeCCCCcEEEccCCCCc
Q 043540 295 DVEMYDLETGKWTQITDMFPA-RIGSDGVSVISAAGEAPPLLAVV--NNELYAADHEKEEVRKFDKGRKLWRTLGRLPEQ 371 (437)
Q Consensus 295 ~v~~yd~~~~~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~~ 371 (437)
.+..||+.+++-...-..... ... ....++.. ++.||+.+...+.|.+||+.+.+....-..+.+
T Consensus 207 ~i~~~d~~~~~~~~~~~~~~~~~~~------------~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~ 274 (353)
T 3vgz_A 207 ELITIDTADNKILSRKKLLDDGKEH------------FFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES 274 (353)
T ss_dssp EEEEEETTTTEEEEEEECCCSSSCC------------CEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC
T ss_pred eEEEEECCCCeEEEEEEcCCCCCCc------------ccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC
Confidence 588899988764332222111 111 00123333 456888876678999999988776544333332
Q ss_pred ccCCCcccEEEEEeCCEEEEEcC
Q 043540 372 ASSMNGWGLAFRACGDQLIVIGG 394 (437)
Q Consensus 372 ~~~~~~~~~a~~~~~~~l~v~GG 394 (437)
.+.++..-++.+|+.+.
T Consensus 275 ------~~~~~s~dg~~l~v~~~ 291 (353)
T 3vgz_A 275 ------LAVLFNPARNEAYVTHR 291 (353)
T ss_dssp ------CCEEEETTTTEEEEEET
T ss_pred ------ceEEECCCCCEEEEEEC
Confidence 23444444567888764
No 35
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=97.69 E-value=0.0028 Score=59.07 Aligned_cols=257 Identities=11% Similarity=0.076 Sum_probs=127.8
Q ss_pred cEEEEEecC-ceEEEeccC--CCCeeeCCCCCCccccccCCceeEEe-CCEEEEEcCccCCceEEEEECCCCc-eecCCC
Q 043540 140 HWVYFSCKL-KEWEAFDPI--HHRWMHLPPMNASDCFMCADKESLAV-GTELLVFGKEVHGNAIYRYNLLTNT-WSTGMT 214 (437)
Q Consensus 140 ~~l~~~~~~-~~~~~yDp~--~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~v~~yd~~t~~-W~~~~~ 214 (437)
.++++.... ..+..||.. ++++..+..++...... .....- +..||+.+.. ...+.+||...+. ...+..
T Consensus 50 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~dg~~l~~~~~~--~~~i~~~d~~~~~~~~~~~~ 124 (343)
T 1ri6_A 50 RYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT---HISTDHQGQFVFVGSYN--AGNVSVTRLEDGLPVGVVDV 124 (343)
T ss_dssp SEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS---EEEECTTSSEEEEEETT--TTEEEEEEEETTEEEEEEEE
T ss_pred CEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCc---EEEEcCCCCEEEEEecC--CCeEEEEECCCCcccccccc
Confidence 345554433 566676665 66776544332221110 011222 3446665532 3457888873221 222221
Q ss_pred CCCCccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCC-CcEEecC--CCCcC-CcCeeEEEE--CCE-EEEEecc
Q 043540 215 MNTPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSIT-GTWMPIS--SMHKA-RKMCSGVFM--DGK-FYVIGGI 285 (437)
Q Consensus 215 ~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t-~~W~~~~--~~~~~-r~~~~~~~~--~g~-lyv~GG~ 285 (437)
.........++.. +..+|+.+..+ ..+.+||..+ ++...+. ..... ......+.+ +++ +|+.+..
T Consensus 125 ~~~~~~~~~~~~s~dg~~l~~~~~~~------~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~ 198 (343)
T 1ri6_A 125 VEGLDGCHSANISPDNRTLWVPALKQ------DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL 198 (343)
T ss_dssp ECCCTTBCCCEECTTSSEEEEEEGGG------TEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT
T ss_pred ccCCCCceEEEECCCCCEEEEecCCC------CEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCC
Confidence 1211112223332 34677765322 5688999887 6665432 11111 112222333 454 7776543
Q ss_pred cCCCCccCCeEEEEECC--CCceEec---CCCCCcccCCCCcccccccCCCCC-EEEEE-CC-EEEEEeCCCCeEEEEeC
Q 043540 286 GEGSSAMLTDVEMYDLE--TGKWTQI---TDMFPARIGSDGVSVISAAGEAPP-LLAVV-NN-ELYAADHEKEEVRKFDK 357 (437)
Q Consensus 286 ~~~~~~~~~~v~~yd~~--~~~W~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~-~ly~~gg~~~~v~~yd~ 357 (437)
. ..+..||+. +++++.+ ..++...... ..+ .++.. ++ .||+.+...+.|.+||.
T Consensus 199 ~-------~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----------~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~ 260 (343)
T 1ri6_A 199 N-------SSVDVWELKDPHGNIECVQTLDMMPENFSDT-----------RWAADIHITPDGRHLYACDRTASLITVFSV 260 (343)
T ss_dssp T-------TEEEEEESSCTTSCCEEEEEEECSCTTCCSC-----------CCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred C-------CEEEEEEecCCCCcEEEEeeccccCcccccc-----------CCccceEECCCCCEEEEEecCCCEEEEEEE
Confidence 2 358888884 4554332 2233221110 001 12222 34 67777666778999998
Q ss_pred C--CCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCceecCccCCCceEeeeEE
Q 043540 358 G--RKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKLLARQPMCGFVFNCTV 434 (437)
Q Consensus 358 ~--~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~v 434 (437)
. +++++.+..++.... . .+.++..-+..||+.++.. ..+.+|.+|..+.+++.+..++.+....+.++
T Consensus 261 ~~~~~~~~~~~~~~~~~~-~--~~~~~s~dg~~l~~~~~~~------~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~ 330 (343)
T 1ri6_A 261 SEDGSVLSKEGFQPTETQ-P--RGFNVDHSGKYLIAAGQKS------HHISVYEIVGEQGLLHEKGRYAVGQGPMWVVV 330 (343)
T ss_dssp CTTSCCEEEEEEEECSSS-C--CCEEECTTSSEEEEECTTT------CEEEEEEEETTTTEEEEEEEEECSSSCCEEEE
T ss_pred cCCCCceEEeeeecCCCc-c--ceEEECCCCCEEEEecCCC------CeEEEEEEcCCCceeeEccccccCCCCeeEEE
Confidence 7 566777654443221 1 2344433345677665422 25778888988888988877766554444444
No 36
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.63 E-value=0.0024 Score=57.90 Aligned_cols=122 Identities=11% Similarity=-0.108 Sum_probs=81.0
Q ss_pred CCCCCCccc--eeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEECCEEEEEecccCCCC
Q 043540 213 MTMNTPRCL--FGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSS 290 (437)
Q Consensus 213 ~~~~~~r~~--~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~ 290 (437)
...|..... .+....++.+|+..|..+. +.+.++|++|++=..--.++..-...+.+..+++||++....
T Consensus 35 ~~~phd~~~ftqGL~~~~~~LyestG~~g~----S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~---- 106 (262)
T 3nol_A 35 HSYPHDTKAFTEGFFYRNGYFYESTGLNGR----SSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKN---- 106 (262)
T ss_dssp EEEECCTTCEEEEEEEETTEEEEEEEETTE----EEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSS----
T ss_pred EEecCCCCcccceEEEECCEEEEECCCCCC----ceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeC----
Confidence 333444333 3555568999999986532 688999999998644434443333455677899999996543
Q ss_pred ccCCeEEEEECCCCceE-ecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCcEE
Q 043540 291 AMLTDVEMYDLETGKWT-QITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKLWR 363 (437)
Q Consensus 291 ~~~~~v~~yd~~~~~W~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~W~ 363 (437)
+.+.+||+++.+-. +++- +..+ -+++.-+++||+..| .+.|+.+|+++.+-.
T Consensus 107 ---~~v~v~D~~t~~~~~ti~~---~~eG--------------~glt~dg~~L~~SdG-s~~i~~iDp~T~~v~ 159 (262)
T 3nol_A 107 ---GLGFVWNIRNLRQVRSFNY---DGEG--------------WGLTHNDQYLIMSDG-TPVLRFLDPESLTPV 159 (262)
T ss_dssp ---SEEEEEETTTCCEEEEEEC---SSCC--------------CCEEECSSCEEECCS-SSEEEEECTTTCSEE
T ss_pred ---CEEEEEECccCcEEEEEEC---CCCc--------------eEEecCCCEEEEECC-CCeEEEEcCCCCeEE
Confidence 46999999886543 2221 2222 235555677888876 688999999986543
No 37
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=97.59 E-value=0.04 Score=50.04 Aligned_cols=223 Identities=11% Similarity=0.081 Sum_probs=112.9
Q ss_pred CceEEEeccCCCCeeeCCCCCCccccccCCceeEE--eCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeE
Q 043540 148 LKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLA--VGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSA 225 (437)
Q Consensus 148 ~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~ 225 (437)
...+..||+....-..++...........-..++. -++.+|+.+.. ....+.+||+....-+.+.... ...-.+++
T Consensus 50 ~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~-~~~~i~~~d~~g~~~~~~~~~~-~~~~~~i~ 127 (286)
T 1q7f_A 50 NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS-PTHQIQIYNQYGQFVRKFGATI-LQHPRGVT 127 (286)
T ss_dssp GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG-GGCEEEEECTTSCEEEEECTTT-CSCEEEEE
T ss_pred CCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC-CCCEEEEECCCCcEEEEecCcc-CCCceEEE
Confidence 34577888875443333321110000000011222 36788887632 1357889996444333332111 11112333
Q ss_pred EE-CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECC
Q 043540 226 SL-GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLE 302 (437)
Q Consensus 226 ~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~ 302 (437)
+- ++++|+.... ...+.+||+.......+.... .......+.+ +|++|+..... ..+.+||+.
T Consensus 128 ~~~~g~l~v~~~~------~~~i~~~~~~g~~~~~~~~~~-~~~~p~~i~~~~~g~l~v~~~~~-------~~i~~~~~~ 193 (286)
T 1q7f_A 128 VDNKGRIIVVECK------VMRVIIFDQNGNVLHKFGCSK-HLEFPNGVVVNDKQEIFISDNRA-------HCVKVFNYE 193 (286)
T ss_dssp ECTTSCEEEEETT------TTEEEEECTTSCEEEEEECTT-TCSSEEEEEECSSSEEEEEEGGG-------TEEEEEETT
T ss_pred EeCCCCEEEEECC------CCEEEEEcCCCCEEEEeCCCC-ccCCcEEEEECCCCCEEEEECCC-------CEEEEEcCC
Confidence 32 5688887542 257889998665444432111 1112233333 58999986543 468999987
Q ss_pred CCceEecCCCCCcccCCCCcccccccCCCCCEEEE-ECCEEEEEeCCCC-eEEEEeCCCCcEEEccC-CCCcccCCCccc
Q 043540 303 TGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV-VNNELYAADHEKE-EVRKFDKGRKLWRTLGR-LPEQASSMNGWG 379 (437)
Q Consensus 303 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~~-~v~~yd~~~~~W~~v~~-lp~~~~~~~~~~ 379 (437)
......+..-. .... +..++. -+|+||+.+...+ .|.+||+..+.-..+.. .+... .++
T Consensus 194 g~~~~~~~~~g-~~~~-------------p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~----~~~ 255 (286)
T 1q7f_A 194 GQYLRQIGGEG-ITNY-------------PIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQ----CFD 255 (286)
T ss_dssp CCEEEEESCTT-TSCS-------------EEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSC----EEE
T ss_pred CCEEEEEccCC-ccCC-------------CcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCc----cee
Confidence 65444443210 0011 122333 3689999986665 89999987654444432 11110 123
Q ss_pred EEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCC
Q 043540 380 LAFRACGDQLIVIGGPRDSGGGIVELNGWVPDE 412 (437)
Q Consensus 380 ~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~ 412 (437)
.++ .-+++|||... + ..+.+|+++.
T Consensus 256 i~~-~~~g~l~vs~~-~------~~v~v~~~~~ 280 (286)
T 1q7f_A 256 VAL-MDDGSVVLASK-D------YRLYIYRYVQ 280 (286)
T ss_dssp EEE-ETTTEEEEEET-T------TEEEEEECSC
T ss_pred EEE-CCCCcEEEECC-C------CeEEEEEccc
Confidence 332 23678998842 2 2467777654
No 38
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=97.53 E-value=0.0018 Score=61.15 Aligned_cols=189 Identities=14% Similarity=0.086 Sum_probs=94.3
Q ss_pred eEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccc-eeeE-EE
Q 043540 150 EWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCL-FGSA-SL 227 (437)
Q Consensus 150 ~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~-~~~~-~~ 227 (437)
.++.+|+.++++..+.......... ...+.-+++||+.+.......+++||..+++++.+......... ..++ .-
T Consensus 19 ~v~~~d~~tg~~~~~~~~~~~~~p~---~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp 95 (347)
T 3hfq_A 19 YQGTLDTTAKTLTNDGLLAATQNPT---YLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE 95 (347)
T ss_dssp EEEEEETTTTEEEEEEEEEECSCCC---CEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET
T ss_pred EEEEEcCCCCeEEEeeeeeccCCcc---eEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC
Confidence 3667788888776543221111110 11123367777775322346789999988887665432211111 1222 22
Q ss_pred CC-EEEEEeccCCCCCCCceEEEEECC-CCcEEecCCC------CcCCc---CeeEEEE--CCEEEEEecccCCCCccCC
Q 043540 228 GE-IAILAGGCDPRGKLLKSAELYNSI-TGTWMPISSM------HKARK---MCSGVFM--DGKFYVIGGIGEGSSAMLT 294 (437)
Q Consensus 228 ~~-~iyv~GG~~~~~~~~~~~~~yd~~-t~~W~~~~~~------~~~r~---~~~~~~~--~g~lyv~GG~~~~~~~~~~ 294 (437)
++ .+|+.+.. ...+.+||.. +++.+.+... |..|. ....+.+ +|++|+.+... .
T Consensus 96 dg~~l~~~~~~------~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~-------~ 162 (347)
T 3hfq_A 96 ARQLVYSANYH------KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGS-------D 162 (347)
T ss_dssp TTTEEEEEETT------TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTT-------T
T ss_pred CCCEEEEEeCC------CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCC-------C
Confidence 34 57766532 2567788874 3344433221 11111 1222333 67877765432 3
Q ss_pred eEEEEECC-CCceEecCCCCCcccCCCCcccccccCCCCCEEEE-ECCE-EEEEeCCCCeEEEEeCC--CCcEEEcc
Q 043540 295 DVEMYDLE-TGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV-VNNE-LYAADHEKEEVRKFDKG--RKLWRTLG 366 (437)
Q Consensus 295 ~v~~yd~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-ly~~gg~~~~v~~yd~~--~~~W~~v~ 366 (437)
.+..||+. +++...+......... .+..++. -+|+ ||+.+...+.+.+|+.. ++++..+.
T Consensus 163 ~v~~~~~~~~g~~~~~~~~~~~~g~------------~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~ 227 (347)
T 3hfq_A 163 KVYVYNVSDAGQLSEQSVLTMEAGF------------GPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLG 227 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEECCTTC------------CEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEEEECCCCcEEEeeeEEcCCCC------------CCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEee
Confidence 68889988 5655544321111100 0011222 2555 88877666777777655 56665443
No 39
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.004 Score=58.82 Aligned_cols=241 Identities=8% Similarity=0.067 Sum_probs=119.6
Q ss_pred cEEEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEe--C--CEEEEEcCccCCceEEEEECCCCceecCCCC
Q 043540 140 HWVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAV--G--TELLVFGKEVHGNAIYRYNLLTNTWSTGMTM 215 (437)
Q Consensus 140 ~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~--~--~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~ 215 (437)
.++........+..||.....+..+..+....... ..+.. . +.+++.|+. ...+.+||..+++|..+..+
T Consensus 24 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v----~~~~~~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~ 97 (379)
T 3jrp_A 24 KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPV----WRVDWAHPKFGTILASCSY--DGKVLIWKEENGRWSQIAVH 97 (379)
T ss_dssp SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCE----EEEEECCGGGCSEEEEEET--TSCEEEEEEETTEEEEEEEE
T ss_pred CEEEEEECCCcEEEEecCCCcceeeeEecCCCCcE----EEEEeCCCCCCCEEEEecc--CCEEEEEEcCCCceeEeeee
Confidence 44555445566777887755554433322111100 11222 2 455555543 24688899999887765543
Q ss_pred CCCccceeeEEE--C--CEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEE-EE--------------C
Q 043540 216 NTPRCLFGSASL--G--EIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGV-FM--------------D 276 (437)
Q Consensus 216 ~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~-~~--------------~ 276 (437)
........++.+ + +.+++.|+.+ ..+.+||..+..-...-.+.........+ +. +
T Consensus 98 ~~~~~~v~~~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 171 (379)
T 3jrp_A 98 AVHSASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKE 171 (379)
T ss_dssp CCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CT
T ss_pred cCCCcceEEEEeCCCCCCCEEEEecCC------CcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCC
Confidence 322222333333 2 5666776643 56888898776321111111111112222 22 4
Q ss_pred CEEEEEecccCCCCccCCeEEEEECCCCc--eEecCCCCCcccCCCCcccccccCCCCCEEEEE-C---CEEEEEeCCCC
Q 043540 277 GKFYVIGGIGEGSSAMLTDVEMYDLETGK--WTQITDMFPARIGSDGVSVISAAGEAPPLLAVV-N---NELYAADHEKE 350 (437)
Q Consensus 277 g~lyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~ly~~gg~~~ 350 (437)
+.+++.|+.+ ..+..||+.++. |..+..+...... + ..++.. + +.+++.++..+
T Consensus 172 ~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~h~~~----v---------~~~~~sp~~~~~~~l~s~~~dg 231 (379)
T 3jrp_A 172 SRKFVTGGAD-------NLVKIWKYNSDAQTYVLESTLEGHSDW----V---------RDVAWSPTVLLRSYLASVSQDR 231 (379)
T ss_dssp TCEEEEEETT-------SCEEEEEEETTTTEEEEEEEECCCSSC----E---------EEEEECCCCSSSEEEEEEETTS
T ss_pred CCEEEEEeCC-------CeEEEEEecCCCcceeeEEEEecccCc----E---------eEEEECCCCCCCCeEEEEeCCC
Confidence 7777777765 247888876543 4443322211111 0 122222 3 67888887778
Q ss_pred eEEEEeCCCCc----EEEccCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCceecCcc
Q 043540 351 EVRKFDKGRKL----WRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKLLARQ 423 (437)
Q Consensus 351 ~v~~yd~~~~~----W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~ 423 (437)
.|.+||..+.. -........... -...++ .-+++++++|+.+ ..+.+|.++. ...|..+..+
T Consensus 232 ~i~iwd~~~~~~~~~~~~~~~~~~~~~---v~~~~~-s~~g~~l~~~~~d------g~i~iw~~~~-~~~~~~~~~~ 297 (379)
T 3jrp_A 232 TCIIWTQDNEQGPWKKTLLKEEKFPDV---LWRASW-SLSGNVLALSGGD------NKVTLWKENL-EGKWEPAGEV 297 (379)
T ss_dssp CEEEEEESSTTSCCEEEESSSSCCSSC---EEEEEE-CSSSCCEEEEESS------SSEEEEEEEE-TTEEEEEEEE
T ss_pred EEEEEeCCCCCccceeeeeccccCCCc---EEEEEE-cCCCCEEEEecCC------CcEEEEeCCC-CCccccccce
Confidence 89999988763 222221111110 011222 2355666666543 1366777653 3577766543
No 40
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=97.38 E-value=0.062 Score=48.69 Aligned_cols=203 Identities=8% Similarity=0.050 Sum_probs=105.8
Q ss_pred CceEEEeccCCCCeeeCCCCCCccccccCCceeEE-eCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEE
Q 043540 148 LKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLA-VGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSAS 226 (437)
Q Consensus 148 ~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~ 226 (437)
...+..||+. ++...+. ++...... ..++. -++.+|+.... ...++++|+ +++..............+++.
T Consensus 77 ~~~i~~~~~~-g~~~~~~-~~~~~~~~---~~i~~~~~g~l~v~~~~--~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~ 148 (299)
T 2z2n_A 77 ANKIGRITKK-GIIKEYT-LPNPDSAP---YGITEGPNGDIWFTEMN--GNRIGRITD-DGKIREYELPNKGSYPSFITL 148 (299)
T ss_dssp TTEEEEECTT-SCEEEEE-CSSTTCCE---EEEEECTTSCEEEEETT--TTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred CCeEEEECCC-CcEEEEe-CCCcCCCc---eeeEECCCCCEEEEecC--CceEEEECC-CCCEEEecCCCCCCCCceEEE
Confidence 3457888886 4444332 12111100 11122 25778886422 357889998 666554321111111223333
Q ss_pred E-CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCC
Q 043540 227 L-GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLET 303 (437)
Q Consensus 227 ~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~ 303 (437)
- ++.+|+.... ...+.+||+ +++..... .+........+.+ +|+||+..... ..+..||+ +
T Consensus 149 ~~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~~-------~~i~~~~~-~ 212 (299)
T 2z2n_A 149 GSDNALWFTENQ------NNAIGRITE-SGDITEFK-IPTPASGPVGITKGNDDALWFVEIIG-------NKIGRITT-S 212 (299)
T ss_dssp CTTSCEEEEETT------TTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECTTSSEEEEETTT-------TEEEEECT-T
T ss_pred cCCCCEEEEeCC------CCEEEEEcC-CCcEEEee-CCCCCCcceeEEECCCCCEEEEccCC-------ceEEEECC-C
Confidence 3 5688886421 257899999 77776542 1111122223333 57898875322 35889999 7
Q ss_pred CceEecCCCCCcccCCCCcccccccCCCCCEEEEE-CCEEEEEeCCCCeEEEEeCCCCcEEEccCCCCcccCCCcccEEE
Q 043540 304 GKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV-NNELYAADHEKEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAF 382 (437)
Q Consensus 304 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~ 382 (437)
++...+. .+..... +..++.. +|+||+.....+.|.+||+ +.+...+. ++.... .-.+.+
T Consensus 213 g~~~~~~-~~~~~~~-------------~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~-~~~~~~--~~~~i~- 273 (299)
T 2z2n_A 213 GEITEFK-IPTPNAR-------------PHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYP-IQIKSA--EPHGIC- 273 (299)
T ss_dssp CCEEEEE-CSSTTCC-------------EEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEE-CSSSSC--CEEEEE-
T ss_pred CcEEEEE-CCCCCCC-------------ceeEEECCCCCEEEeccCCceEEEECC-CCceEEEe-CCCCCC--ccceEE-
Confidence 7776542 1111111 1223332 6789998766788999999 45555442 221111 112233
Q ss_pred EEeCCEEEEEcC
Q 043540 383 RACGDQLIVIGG 394 (437)
Q Consensus 383 ~~~~~~l~v~GG 394 (437)
..+++||+...
T Consensus 274 -~~~g~l~v~~~ 284 (299)
T 2z2n_A 274 -FDGETIWFAME 284 (299)
T ss_dssp -ECSSCEEEEET
T ss_pred -ecCCCEEEEec
Confidence 26678888753
No 41
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.38 E-value=0.038 Score=53.88 Aligned_cols=196 Identities=16% Similarity=0.161 Sum_probs=103.6
Q ss_pred EeCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecC
Q 043540 182 AVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPIS 261 (437)
Q Consensus 182 ~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 261 (437)
..++..++.|+. ...+.+||+.+.+-.. .+........+..+++..++.|+.+ ..+.+||..+++-...
T Consensus 246 ~~~~~~l~~~~~--dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~- 314 (445)
T 2ovr_B 246 QYDGRRVVSGAY--DFMVKVWDPETETCLH--TLQGHTNRVYSLQFDGIHVVSGSLD------TSIRVWDVETGNCIHT- 314 (445)
T ss_dssp EECSSCEEEEET--TSCEEEEEGGGTEEEE--EECCCSSCEEEEEECSSEEEEEETT------SCEEEEETTTCCEEEE-
T ss_pred EECCCEEEEEcC--CCEEEEEECCCCcEeE--EecCCCCceEEEEECCCEEEEEeCC------CeEEEEECCCCCEEEE-
Confidence 345555555543 3467888887654321 1111112233344477777777754 5588999988763221
Q ss_pred CCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCE
Q 043540 262 SMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNE 341 (437)
Q Consensus 262 ~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (437)
+............++.+++.|+.+ ..+..||+.+++-...-..+..... .-..+..++.
T Consensus 315 -~~~~~~~v~~~~~~~~~l~~~~~d-------g~i~vwd~~~~~~~~~~~~~~~~~~-------------~v~~~~~~~~ 373 (445)
T 2ovr_B 315 -LTGHQSLTSGMELKDNILVSGNAD-------STVKIWDIKTGQCLQTLQGPNKHQS-------------AVTCLQFNKN 373 (445)
T ss_dssp -ECCCCSCEEEEEEETTEEEEEETT-------SCEEEEETTTCCEEEEECSTTSCSS-------------CEEEEEECSS
T ss_pred -EcCCcccEEEEEEeCCEEEEEeCC-------CeEEEEECCCCcEEEEEccCCCCCC-------------CEEEEEECCC
Confidence 122222334445566677777654 2588999987653222111111111 0223455788
Q ss_pred EEEEeCCCCeEEEEeCCCCcEEEcc-CCCCcccCCCcccEEEEEeC-CEEEEEcCCCCCCCCeeEEEeeecCCC
Q 043540 342 LYAADHEKEEVRKFDKGRKLWRTLG-RLPEQASSMNGWGLAFRACG-DQLIVIGGPRDSGGGIVELNGWVPDEG 413 (437)
Q Consensus 342 ly~~gg~~~~v~~yd~~~~~W~~v~-~lp~~~~~~~~~~~a~~~~~-~~l~v~GG~~~~~~~~~~~~~~~~d~~ 413 (437)
+++.|+..+.|.+||..+.+....- ....... .+.-.++.... +.++++|+.+. .....+.+|.++.+
T Consensus 374 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~la~~~~dg--~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 374 FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS--GGVVWRIRASNTKLVCAVGSRNG--TEETKLLVLDFDVD 443 (445)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEEECTTGGG--TCEEEEEEECSSEEEEEEECSSS--SSCCEEEEEECCCC
T ss_pred EEEEEeCCCeEEEEECCCCceeeeeeccccCCC--CceEEEEEecCCEEEEEEcccCC--CCccEEEEEECCCC
Confidence 8888888889999999987754321 1111111 11112233333 45666776552 22345667777654
No 42
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=97.33 E-value=0.029 Score=52.39 Aligned_cols=182 Identities=11% Similarity=0.067 Sum_probs=89.5
Q ss_pred CCEEEEEcCcc----CCceEEEEECCCCceecCCCCCCCccceeeEEE-C-CEEEEEeccCCCCCCCceEEEEECCCCcE
Q 043540 184 GTELLVFGKEV----HGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL-G-EIAILAGGCDPRGKLLKSAELYNSITGTW 257 (437)
Q Consensus 184 ~~~lyv~GG~~----~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W 257 (437)
++.+|+..... ....++++|+.+++-...-+. ....++.+.. + +.+|+.++.+ ..+.+||+.+++-
T Consensus 52 g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~~------~~v~~~d~~~~~~ 123 (353)
T 3vgz_A 52 ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN--DLKPFGATINNTTQTLWFGNTVN------SAVTAIDAKTGEV 123 (353)
T ss_dssp TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE--SSCCCSEEEETTTTEEEEEETTT------TEEEEEETTTCCE
T ss_pred CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec--CCCcceEEECCCCCEEEEEecCC------CEEEEEeCCCCee
Confidence 34677664221 246799999988764332111 1112233332 3 4588876532 5789999998874
Q ss_pred EecCCCCcCC--------cCeeEEEE-C-CEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccc
Q 043540 258 MPISSMHKAR--------KMCSGVFM-D-GKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISA 327 (437)
Q Consensus 258 ~~~~~~~~~r--------~~~~~~~~-~-g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ 327 (437)
...-...... .....++. + +.+|+.+... ...+..||+.+.+-...-+.......
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~------~~~i~~~d~~~~~~~~~~~~~~~~~~--------- 188 (353)
T 3vgz_A 124 KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK------ESVIWVVDGGNIKLKTAIQNTGKMST--------- 188 (353)
T ss_dssp EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS------SCEEEEEETTTTEEEEEECCCCTTCC---------
T ss_pred EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC------CceEEEEcCCCCceEEEecCCCCccc---------
Confidence 3221111111 11223333 4 4577765221 23589999987754332221111111
Q ss_pred cCCCCCEEEEECC-EEEEEeCCCCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcC
Q 043540 328 AGEAPPLLAVVNN-ELYAADHEKEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGG 394 (437)
Q Consensus 328 ~~~~~~~~~~~~~-~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG 394 (437)
.....-++ .||+.. ..+.+.+||..+.+-......+.........+.++..-++.||+.+.
T Consensus 189 -----~~~~s~dg~~l~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 250 (353)
T 3vgz_A 189 -----GLALDSEGKRLYTTN-ADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS 250 (353)
T ss_dssp -----CCEEETTTTEEEEEC-TTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES
T ss_pred -----eEEECCCCCEEEEEc-CCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC
Confidence 11222244 566654 46789999998876443322211111111112333333567777753
No 43
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.33 E-value=0.0039 Score=59.64 Aligned_cols=179 Identities=14% Similarity=0.140 Sum_probs=96.3
Q ss_pred cCceEEEeccCCCCeeeCCCCCCccccccCCceeEEe-CCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeE
Q 043540 147 KLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAV-GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSA 225 (437)
Q Consensus 147 ~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~ 225 (437)
....+..+|..+++-...-..... ..+ ....- +..||+.++. ...+.+||+.+++....-.... .-..++
T Consensus 10 ~d~~v~v~d~~~~~~~~~~~~~~~--~~~---~~~s~dg~~l~~~~~~--d~~i~v~d~~~~~~~~~~~~~~--~v~~~~ 80 (391)
T 1l0q_A 10 ESDNISVIDVTSNKVTATIPVGSN--PMG---AVISPDGTKVYVANAH--SNDVSIIDTATNNVIATVPAGS--SPQGVA 80 (391)
T ss_dssp TTTEEEEEETTTTEEEEEEECSSS--EEE---EEECTTSSEEEEEEGG--GTEEEEEETTTTEEEEEEECSS--SEEEEE
T ss_pred CCCEEEEEECCCCeEEEEeecCCC--cce---EEECCCCCEEEEECCC--CCeEEEEECCCCeEEEEEECCC--CccceE
Confidence 346688899887754332111111 111 01122 3456676643 3578999998876544322222 112222
Q ss_pred EE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE-CC-EEEEEecccCCCCccCCeEEEEEC
Q 043540 226 SL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM-DG-KFYVIGGIGEGSSAMLTDVEMYDL 301 (437)
Q Consensus 226 ~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~g-~lyv~GG~~~~~~~~~~~v~~yd~ 301 (437)
.. +..||+.+..+ ..+.+||..+++-...-. ........++. ++ .||+.++.. ..+..||+
T Consensus 81 ~spdg~~l~~~~~~~------~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~-------~~v~~~d~ 145 (391)
T 1l0q_A 81 VSPDGKQVYVTNMAS------STLSVIDTTSNTVAGTVK--TGKSPLGLALSPDGKKLYVTNNGD-------KTVSVINT 145 (391)
T ss_dssp ECTTSSEEEEEETTT------TEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTT-------TEEEEEET
T ss_pred ECCCCCEEEEEECCC------CEEEEEECCCCeEEEEEe--CCCCcceEEECCCCCEEEEEeCCC-------CEEEEEEC
Confidence 22 34566665432 578999999887543321 11122233332 44 477776543 36899999
Q ss_pred CCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE-C-CEEEEEeCCCCeEEEEeCCCCcEEEc
Q 043540 302 ETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV-N-NELYAADHEKEEVRKFDKGRKLWRTL 365 (437)
Q Consensus 302 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~ly~~gg~~~~v~~yd~~~~~W~~v 365 (437)
.+++....-...... ..++.. + ..||+.+...+.|.+||..+++....
T Consensus 146 ~~~~~~~~~~~~~~~----------------~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 195 (391)
T 1l0q_A 146 VTKAVINTVSVGRSP----------------KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT 195 (391)
T ss_dssp TTTEEEEEEECCSSE----------------EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCcEEEEEecCCCc----------------ceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEE
Confidence 887654432211110 122222 3 46777777778899999998765543
No 44
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.29 E-value=0.012 Score=57.48 Aligned_cols=226 Identities=13% Similarity=0.137 Sum_probs=108.0
Q ss_pred ecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCceecC-CCCCCCccceee
Q 043540 146 CKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTG-MTMNTPRCLFGS 224 (437)
Q Consensus 146 ~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~-~~~~~~r~~~~~ 224 (437)
.....+..||..+++-... +..... .-..+...+..++.|+. ...+.+||..++.-... ..+........+
T Consensus 190 ~~dg~i~vwd~~~~~~~~~--~~~h~~----~v~~l~~~~~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~ 261 (435)
T 1p22_A 190 SSDSTVRVWDVNTGEMLNT--LIHHCE----AVLHLRFNNGMMVTCSK--DRSIAVWDMASPTDITLRRVLVGHRAAVNV 261 (435)
T ss_dssp ETTSCEEEEESSSCCEEEE--ECCCCS----CEEEEECCTTEEEEEET--TSCEEEEECSSSSCCEEEEEECCCSSCEEE
T ss_pred cCCCeEEEEECCCCcEEEE--EcCCCC----cEEEEEEcCCEEEEeeC--CCcEEEEeCCCCCCceeeeEecCCCCcEEE
Confidence 3445677778776654321 111000 01113334445555543 34688899876542211 111111122233
Q ss_pred EEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCC
Q 043540 225 ASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETG 304 (437)
Q Consensus 225 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~ 304 (437)
...++..++.|+.+ ..+.+||..+++-.. .+.........+..++.+++.|+.+ ..+..||+.++
T Consensus 262 ~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~~g~~d-------g~i~iwd~~~~ 326 (435)
T 1p22_A 262 VDFDDKYIVSASGD------RTIKVWNTSTCEFVR--TLNGHKRGIACLQYRDRLVVSGSSD-------NTIRLWDIECG 326 (435)
T ss_dssp EEEETTEEEEEETT------SEEEEEETTTCCEEE--EEECCSSCEEEEEEETTEEEEEETT-------SCEEEEETTTC
T ss_pred EEeCCCEEEEEeCC------CeEEEEECCcCcEEE--EEcCCCCcEEEEEeCCCEEEEEeCC-------CeEEEEECCCC
Confidence 34466666666643 568899998875322 1222222334445567777777765 35889999876
Q ss_pred ceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCc----------EEEccCCCCcccC
Q 043540 305 KWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKL----------WRTLGRLPEQASS 374 (437)
Q Consensus 305 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~----------W~~v~~lp~~~~~ 374 (437)
+-... +...... -..+.+++..++.|+..+.|.+||..+.. -..+.......
T Consensus 327 ~~~~~--~~~h~~~--------------v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v-- 388 (435)
T 1p22_A 327 ACLRV--LEGHEEL--------------VRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRV-- 388 (435)
T ss_dssp CEEEE--ECCCSSC--------------EEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCC--
T ss_pred CEEEE--EeCCcCc--------------EEEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCe--
Confidence 43221 1111111 12344588888888888889999975432 22222111111
Q ss_pred CCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCceecCccC
Q 043540 375 MNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKLLARQP 424 (437)
Q Consensus 375 ~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p 424 (437)
... ..++..++.||.+ ..+.+|.++.........+..|
T Consensus 389 ---~~l---~~~~~~l~s~s~D------g~i~iwd~~~~~~~~~~~~~~~ 426 (435)
T 1p22_A 389 ---FRL---QFDEFQIVSSSHD------DTILIWDFLNDPAAQAEPPRSP 426 (435)
T ss_dssp ---CCE---EECSSCEEECCSS------SEEEEEC---------------
T ss_pred ---EEE---EeCCCEEEEEeCC------CEEEEEECCCCCCcccCCCCCC
Confidence 122 2266777777754 2577887765554444444333
No 45
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.26 E-value=0.017 Score=52.63 Aligned_cols=113 Identities=18% Similarity=0.055 Sum_probs=73.2
Q ss_pred eeeEEEC-CEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEE
Q 043540 222 FGSASLG-EIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYD 300 (437)
Q Consensus 222 ~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd 300 (437)
++.+..+ +.+|+..|..+ .+.+.++|+++++=...-+++......+.+..+++||+..... +.+.+||
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~----~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~-------~~v~viD 92 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYG----RSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLK-------NIGFIYD 92 (266)
T ss_dssp EEEEECSTTEEEEEECSTT----TCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTC-------SEEEEEE
T ss_pred ccEEEeCCCeEEEECCCCC----CCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecC-------CEEEEEE
Confidence 4555555 79999877422 2789999999998544323333223345666788999996543 4699999
Q ss_pred CCCCceEecCCCCCc-ccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCcE
Q 043540 301 LETGKWTQITDMFPA-RIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKLW 362 (437)
Q Consensus 301 ~~~~~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~W 362 (437)
+.+.+= +..++.+ ..+ -+++.-++++|+..+ .+.+.++|+++.+=
T Consensus 93 ~~t~~v--~~~i~~g~~~g--------------~glt~Dg~~l~vs~g-s~~l~viD~~t~~v 138 (266)
T 2iwa_A 93 RRTLSN--IKNFTHQMKDG--------------WGLATDGKILYGSDG-TSILYEIDPHTFKL 138 (266)
T ss_dssp TTTTEE--EEEEECCSSSC--------------CEEEECSSSEEEECS-SSEEEEECTTTCCE
T ss_pred CCCCcE--EEEEECCCCCe--------------EEEEECCCEEEEECC-CCeEEEEECCCCcE
Confidence 987643 3222222 112 234444678998875 67999999998653
No 46
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=97.26 E-value=0.016 Score=56.08 Aligned_cols=215 Identities=10% Similarity=-0.004 Sum_probs=110.9
Q ss_pred eEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCceecCCCCC---CCccceeeEE
Q 043540 150 EWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMN---TPRCLFGSAS 226 (437)
Q Consensus 150 ~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~---~~r~~~~~~~ 226 (437)
.++.+|+.++++..+..++......+. ...-++.+++.++.. ..+.+||+.+++.....+.. ........+.
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~~~~~~~---~~s~~~~~~~~~~~~--~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~ 176 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTGFQPKSV---RFIDNTRLAIPLLED--EGMDVLDINSGQTVRLSPPEKYKKKLGFVETIS 176 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECSSCBCCC---EESSSSEEEEEBTTS--SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEE
T ss_pred EEEEECCCCCcceEEEEEcCCCCceEE---EEeCCCeEEEEeCCC--CeEEEEECCCCeEeeecCcccccccCCceeEEE
Confidence 567788877766554433322211111 122267888877532 45899999988766432221 1111122233
Q ss_pred E--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcC-eeEEEE-C-CEEEEEecccCCCCccCCeEEEEEC
Q 043540 227 L--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKM-CSGVFM-D-GKFYVIGGIGEGSSAMLTDVEMYDL 301 (437)
Q Consensus 227 ~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~-~~~~~~-~-g~lyv~GG~~~~~~~~~~~v~~yd~ 301 (437)
+ ++.+|+.++.+ ..+.+||..+++-... +...... ...++. + ..+|+.++.+ ..+..||+
T Consensus 177 ~~~~~~~~~s~~~d------~~v~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~i~~~d~ 241 (433)
T 3bws_A 177 IPEHNELWVSQMQA------NAVHVFDLKTLAYKAT--VDLTGKWSKILLYDPIRDLVYCSNWIS-------EDISVIDR 241 (433)
T ss_dssp EGGGTEEEEEEGGG------TEEEEEETTTCCEEEE--EECSSSSEEEEEEETTTTEEEEEETTT-------TEEEEEET
T ss_pred EcCCCEEEEEECCC------CEEEEEECCCceEEEE--EcCCCCCeeEEEEcCCCCEEEEEecCC-------CcEEEEEC
Confidence 3 67888887743 5789999988664322 1111112 223333 3 4566766443 35899999
Q ss_pred CCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE-CC-EEEEEeC-------CCCeEEEEeCCCCcEEEccCCCCcc
Q 043540 302 ETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV-NN-ELYAADH-------EKEEVRKFDKGRKLWRTLGRLPEQA 372 (437)
Q Consensus 302 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~ly~~gg-------~~~~v~~yd~~~~~W~~v~~lp~~~ 372 (437)
.+++....-..... . ..++.. ++ .|++.+. ..+.|++||+.+.+-......+...
T Consensus 242 ~~~~~~~~~~~~~~--~--------------~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~ 305 (433)
T 3bws_A 242 KTKLEIRKTDKIGL--P--------------RGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNK 305 (433)
T ss_dssp TTTEEEEECCCCSE--E--------------EEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECE
T ss_pred CCCcEEEEecCCCC--c--------------eEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCc
Confidence 88765433221111 1 122222 45 4555442 2457999999887644332111111
Q ss_pred cCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecC
Q 043540 373 SSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPD 411 (437)
Q Consensus 373 ~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d 411 (437)
.+.++...++.+|+.++.+ ..+.+|..+
T Consensus 306 -----~~~~~~~~g~~l~~~~~~~------~~v~v~d~~ 333 (433)
T 3bws_A 306 -----RHIVSGNTENKIYVSDMCC------SKIEVYDLK 333 (433)
T ss_dssp -----EEEEECSSTTEEEEEETTT------TEEEEEETT
T ss_pred -----ceEEECCCCCEEEEEecCC------CEEEEEECC
Confidence 1233322344788886543 135555544
No 47
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.20 E-value=0.0055 Score=58.56 Aligned_cols=170 Identities=13% Similarity=0.139 Sum_probs=91.4
Q ss_pred EEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCC
Q 043540 186 ELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSM 263 (437)
Q Consensus 186 ~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 263 (437)
.+|+.|+. ...+.+||..+++-...-... ..-.+++.. +..||+.++.+ ..+.++|..+++-...-..
T Consensus 3 ~l~vs~~~--d~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~d------~~i~v~d~~~~~~~~~~~~ 72 (391)
T 1l0q_A 3 FAYIANSE--SDNISVIDVTSNKVTATIPVG--SNPMGAVISPDGTKVYVANAHS------NDVSIIDTATNNVIATVPA 72 (391)
T ss_dssp EEEEEETT--TTEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEEGGG------TEEEEEETTTTEEEEEEEC
T ss_pred EEEEEcCC--CCEEEEEECCCCeEEEEeecC--CCcceEEECCCCCEEEEECCCC------CeEEEEECCCCeEEEEEEC
Confidence 46666643 357899999887654321111 111222222 34677777643 5789999988875433222
Q ss_pred CcCCcCeeEEEE-CC-EEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE-CC
Q 043540 264 HKARKMCSGVFM-DG-KFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV-NN 340 (437)
Q Consensus 264 ~~~r~~~~~~~~-~g-~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 340 (437)
...-..+++. ++ .||+.+... ..+.+||+.+++-...-...... ..++.. ++
T Consensus 73 --~~~v~~~~~spdg~~l~~~~~~~-------~~v~v~d~~~~~~~~~~~~~~~~----------------~~~~~s~dg 127 (391)
T 1l0q_A 73 --GSSPQGVAVSPDGKQVYVTNMAS-------STLSVIDTTSNTVAGTVKTGKSP----------------LGLALSPDG 127 (391)
T ss_dssp --SSSEEEEEECTTSSEEEEEETTT-------TEEEEEETTTTEEEEEEECSSSE----------------EEEEECTTS
T ss_pred --CCCccceEECCCCCEEEEEECCC-------CEEEEEECCCCeEEEEEeCCCCc----------------ceEEECCCC
Confidence 2222223332 44 466665432 35899999988654332211110 122332 34
Q ss_pred -EEEEEeCCCCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCC
Q 043540 341 -ELYAADHEKEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGP 395 (437)
Q Consensus 341 -~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~ 395 (437)
.||+.+...+.|++||..+.+....-...... ...++..-+..||+.++.
T Consensus 128 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-----~~~~~~~dg~~l~~~~~~ 178 (391)
T 1l0q_A 128 KKLYVTNNGDKTVSVINTVTKAVINTVSVGRSP-----KGIAVTPDGTKVYVANFD 178 (391)
T ss_dssp SEEEEEETTTTEEEEEETTTTEEEEEEECCSSE-----EEEEECTTSSEEEEEETT
T ss_pred CEEEEEeCCCCEEEEEECCCCcEEEEEecCCCc-----ceEEECCCCCEEEEEeCC
Confidence 57788877889999999988765543222211 122322224567777654
No 48
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.18 E-value=0.021 Score=52.71 Aligned_cols=185 Identities=17% Similarity=0.168 Sum_probs=96.4
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecC
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPIS 261 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 261 (437)
++..++.|+. ...+.+||..+++......+...........+ ++..++.|+.+ ..+.+||..+++....
T Consensus 108 ~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~v~~~d~~~~~~~~~- 178 (337)
T 1gxr_A 108 DGCTLIVGGE--ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD------GNIAVWDLHNQTLVRQ- 178 (337)
T ss_dssp TSSEEEEEES--SSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEE-
T ss_pred CCCEEEEEcC--CCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCC------CcEEEEeCCCCceeee-
Confidence 4555555532 35788999988775433322222111222222 55666676643 4588999988764332
Q ss_pred CCCcCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEE-E
Q 043540 262 SMHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV-V 338 (437)
Q Consensus 262 ~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 338 (437)
+.........+.+ ++++++.++.+ ..+..||+.+.+-...-...... ..++. -
T Consensus 179 -~~~~~~~i~~~~~~~~~~~l~~~~~d-------g~i~~~d~~~~~~~~~~~~~~~v----------------~~~~~s~ 234 (337)
T 1gxr_A 179 -FQGHTDGASCIDISNDGTKLWTGGLD-------NTVRSWDLREGRQLQQHDFTSQI----------------FSLGYCP 234 (337)
T ss_dssp -ECCCSSCEEEEEECTTSSEEEEEETT-------SEEEEEETTTTEEEEEEECSSCE----------------EEEEECT
T ss_pred -eecccCceEEEEECCCCCEEEEEecC-------CcEEEEECCCCceEeeecCCCce----------------EEEEECC
Confidence 2212222233333 67677776654 35889999876543221111111 11222 2
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEE-eCCEEEEEcCCCCCCCCeeEEEeeecCCCC
Q 043540 339 NNELYAADHEKEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRA-CGDQLIVIGGPRDSGGGIVELNGWVPDEGP 414 (437)
Q Consensus 339 ~~~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~ 414 (437)
+++++++++..+.+.+||..+.+-..+....... .++.. -++++++.|+.+ ..+.+|..+...
T Consensus 235 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~l~~~~~d------g~i~~~~~~~~~ 298 (337)
T 1gxr_A 235 TGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCV-------LSLKFAYCGKWFVSTGKD------NLLNAWRTPYGA 298 (337)
T ss_dssp TSSEEEEEETTSCEEEEETTSSCEEEECCCSSCE-------EEEEECTTSSEEEEEETT------SEEEEEETTTCC
T ss_pred CCCEEEEEcCCCcEEEEECCCCCeEEEcCCccce-------eEEEECCCCCEEEEecCC------CcEEEEECCCCe
Confidence 6777778777788999999887644433222111 12222 245666666543 245667655433
No 49
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=97.18 E-value=0.018 Score=54.46 Aligned_cols=237 Identities=13% Similarity=0.056 Sum_probs=110.8
Q ss_pred EEEeccCCCCeeeCCCCCCccccccCCceeEEe-CCEEEEEcCcc-CCceE--EEEECCCCceecCCCCCCCccc-eeeE
Q 043540 151 WEAFDPIHHRWMHLPPMNASDCFMCADKESLAV-GTELLVFGKEV-HGNAI--YRYNLLTNTWSTGMTMNTPRCL-FGSA 225 (437)
Q Consensus 151 ~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~lyv~GG~~-~~~~v--~~yd~~t~~W~~~~~~~~~r~~-~~~~ 225 (437)
++.+|+.++++..+... ....... ..+.- +..||+.+... ....+ |.++..+++.+.+...+..... ...+
T Consensus 31 ~~~~d~~~g~~~~~~~~-~~~~p~~---l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~ 106 (361)
T 3scy_A 31 TFRFNEETGESLPLSDA-EVANPSY---LIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLT 106 (361)
T ss_dssp EEEEETTTCCEEEEEEE-ECSCCCS---EEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEE
T ss_pred EEEEeCCCCCEEEeecc-cCCCCce---EEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEE
Confidence 56678888887765443 1111000 01222 34577765421 12344 5556666777766543322112 2223
Q ss_pred EECCEEEEEeccCCCCCCCceEEEEECCCCc-EEecC-------CCCc-CC---cC-eeEEEE-CCE-EEEEecccCCCC
Q 043540 226 SLGEIAILAGGCDPRGKLLKSAELYNSITGT-WMPIS-------SMHK-AR---KM-CSGVFM-DGK-FYVIGGIGEGSS 290 (437)
Q Consensus 226 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~-------~~~~-~r---~~-~~~~~~-~g~-lyv~GG~~~~~~ 290 (437)
.-+..+|+.... ...+.+|+..++. ...+. .-+. .| .. +.+++. +|+ ||+.+...
T Consensus 107 ~dg~~l~~~~~~------~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~---- 176 (361)
T 3scy_A 107 TNGKNIVTANYS------GGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGT---- 176 (361)
T ss_dssp ECSSEEEEEETT------TTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTT----
T ss_pred ECCCEEEEEECC------CCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCC----
Confidence 333456665432 2567888876432 11111 0111 01 11 223332 565 77664322
Q ss_pred ccCCeEEEEECCCCc-------eEec---C--CCCCcccCCCCcccccccCCCCCEEEE-ECC-EEEEEeCCCCeEEEEe
Q 043540 291 AMLTDVEMYDLETGK-------WTQI---T--DMFPARIGSDGVSVISAAGEAPPLLAV-VNN-ELYAADHEKEEVRKFD 356 (437)
Q Consensus 291 ~~~~~v~~yd~~~~~-------W~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~ly~~gg~~~~v~~yd 356 (437)
..+..|++.... .... . ..+.. .. +..++. -+| .||+.+...+.|.+||
T Consensus 177 ---~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~-------------~~~~~~spdg~~l~v~~~~~~~v~v~~ 239 (361)
T 3scy_A 177 ---DQIHKFNINPNANADNKEKFLTKGTPEAFKVAPG-SG-------------PRHLIFNSDGKFAYLINEIGGTVIAFR 239 (361)
T ss_dssp ---TEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTT-CC-------------EEEEEECTTSSEEEEEETTTCEEEEEE
T ss_pred ---CEEEEEEEcCCCCcccccceeecccccceecCCC-CC-------------CeEEEEcCCCCEEEEEcCCCCeEEEEE
Confidence 357777766443 2111 0 11111 11 012232 245 5788776678899999
Q ss_pred CCCCcEEEccCCCCcccCCCc-ccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCceecCcc
Q 043540 357 KGRKLWRTLGRLPEQASSMNG-WGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKLLARQ 423 (437)
Q Consensus 357 ~~~~~W~~v~~lp~~~~~~~~-~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~ 423 (437)
..+++...+..++.......+ .+.++..-+..||+.+.. ....+.+|.+|..+.+++.+...
T Consensus 240 ~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~-----~~~~i~v~~~~~~~g~~~~~~~~ 302 (361)
T 3scy_A 240 YADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL-----KADGVAIFKVDETNGTLTKVGYQ 302 (361)
T ss_dssp EETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS-----SSCEEEEEEECTTTCCEEEEEEE
T ss_pred ecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC-----CCCEEEEEEEcCCCCcEEEeeEe
Confidence 988877655433221110000 122222223457766532 02357788888766776665443
No 50
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=97.17 E-value=0.011 Score=56.11 Aligned_cols=228 Identities=9% Similarity=0.024 Sum_probs=107.3
Q ss_pred EEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccc
Q 043540 142 VYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCL 221 (437)
Q Consensus 142 l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~ 221 (437)
+........+..||..+++-..........+..........-++..++.|+.. ..+.+||..+++-... +......
T Consensus 96 l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d--~~i~iwd~~~~~~~~~--~~~h~~~ 171 (344)
T 4gqb_B 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD--ICIKVWDLAQQVVLSS--YRAHAAQ 171 (344)
T ss_dssp EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT--SCEEEEETTTTEEEEE--ECCCSSC
T ss_pred EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC--CeEEEEECCCCcEEEE--EcCcCCc
Confidence 44444556778888877653221110000000000000112255666666433 4588899887653221 1111111
Q ss_pred eeeEEE---CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE---CCEEEEEecccCCCCccCCe
Q 043540 222 FGSASL---GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM---DGKFYVIGGIGEGSSAMLTD 295 (437)
Q Consensus 222 ~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~---~g~lyv~GG~~~~~~~~~~~ 295 (437)
..++.+ +..+++.|+.+ ..+.+||..+.+-...-..........++.+ ++++++.|+.+ ..
T Consensus 172 V~~~~~~~~~~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d-------g~ 238 (344)
T 4gqb_B 172 VTCVAASPHKDSVFLSCSED------NRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN-------GT 238 (344)
T ss_dssp EEEEEECSSCTTEEEEEETT------SCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETT-------SE
T ss_pred eEEEEecCCCCCceeeeccc------cccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccC-------Cc
Confidence 122222 33577777754 4578899988764322111111122222322 56677877765 35
Q ss_pred EEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE-CC-EEEEEeCCCCeEEEEeCCCCcEEEccCCCCccc
Q 043540 296 VEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV-NN-ELYAADHEKEEVRKFDKGRKLWRTLGRLPEQAS 373 (437)
Q Consensus 296 v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~~~~ 373 (437)
+..||+.+++- +..+ .+|...+ ..++.. ++ ++++.|+..+.|.+||..+++-.....-....
T Consensus 239 v~~wd~~~~~~--~~~~----~~h~~~v---------~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V- 302 (344)
T 4gqb_B 239 VSLVDTKSTSC--VLSS----AVHSQCV---------TGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFV- 302 (344)
T ss_dssp EEEEESCC--C--CEEE----ECCSSCE---------EEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCE-
T ss_pred EEEEECCCCcE--EEEE----cCCCCCE---------EEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCE-
Confidence 88899876531 1111 1110000 122222 34 56666767778999999887644332111110
Q ss_pred CCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCC
Q 043540 374 SMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDE 412 (437)
Q Consensus 374 ~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~ 412 (437)
..+++...+..|++.||.+. .+.+|.++.
T Consensus 303 ----~~v~~sp~~~~llas~s~D~------~v~~w~v~~ 331 (344)
T 4gqb_B 303 ----RDATWSPLNHSLLTTVGWDH------QVVHHVVPT 331 (344)
T ss_dssp ----EEEEECSSSTTEEEEEETTS------CEEEEECCC
T ss_pred ----EEEEEeCCCCeEEEEEcCCC------eEEEEECCC
Confidence 12222223456777777652 366787654
No 51
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=97.15 E-value=0.0068 Score=57.73 Aligned_cols=189 Identities=11% Similarity=0.019 Sum_probs=93.4
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEE---CCEEEEEeccCCCCCCCceEEEEECCCCcEEec
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL---GEIAILAGGCDPRGKLLKSAELYNSITGTWMPI 260 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 260 (437)
++..++.|+. ...+.+||..+++-... +........++.+ ++.+++.|+.+ ..+.+||..+.+-...
T Consensus 150 dg~~l~sgs~--dg~v~iwd~~~~~~~~~--~~~h~~~v~~v~~s~~~~~~~~s~~~d------g~v~~wd~~~~~~~~~ 219 (357)
T 4g56_B 150 DGTQAVSGGK--DFSVKVWDLSQKAVLKS--YNAHSSEVNCVAACPGKDTIFLSCGED------GRILLWDTRKPKPATR 219 (357)
T ss_dssp SSSEEEEEET--TSCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTCSSCEEEEETT------SCEEECCTTSSSCBCB
T ss_pred CCCEEEEEeC--CCeEEEEECCCCcEEEE--EcCCCCCEEEEEEccCCCceeeeeccC------CceEEEECCCCceeee
Confidence 4556666643 34588899887754322 1111111222222 23567777754 4578889887653322
Q ss_pred CCCCcCCcCeeEEEE---CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEE
Q 043540 261 SSMHKARKMCSGVFM---DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV 337 (437)
Q Consensus 261 ~~~~~~r~~~~~~~~---~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (437)
............+.+ ++.+++.|+.+ ..+..||+.+.+-... +.. ... .+ ..++.
T Consensus 220 ~~~~~~~~~v~~v~~sp~~~~~la~g~~d-------~~i~~wd~~~~~~~~~--~~~-~~~---~v---------~~l~~ 277 (357)
T 4g56_B 220 IDFCASDTIPTSVTWHPEKDDTFACGDET-------GNVSLVNIKNPDSAQT--SAV-HSQ---NI---------TGLAY 277 (357)
T ss_dssp CCCTTCCSCEEEEEECTTSTTEEEEEESS-------SCEEEEESSCGGGCEE--ECC-CSS---CE---------EEEEE
T ss_pred eeeccccccccchhhhhcccceEEEeecc-------cceeEEECCCCcEeEE--Eec-cce---eE---------EEEEE
Confidence 222222222333333 35677777654 2488899876532111 110 011 00 11222
Q ss_pred -ECC-EEEEEeCCCCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCC
Q 043540 338 -VNN-ELYAADHEKEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGPP 415 (437)
Q Consensus 338 -~~~-~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~ 415 (437)
-++ ++++.|+....|.+||.++.+-.... ..... . ..+++...++++++.||.+. .+.+|.......
T Consensus 278 sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~--~H~~~-V--~~vafsP~d~~~l~s~s~Dg------~v~iW~~~~~~~ 346 (357)
T 4g56_B 278 SYHSSPFLASISEDCTVAVLDADFSEVFRDL--SHRDF-V--TGVAWSPLDHSKFTTVGWDH------KVLHHHLPSEGR 346 (357)
T ss_dssp CSSSSCCEEEEETTSCEEEECTTSCEEEEEC--CCSSC-E--EEEEECSSSTTEEEEEETTS------CEEEEECC----
T ss_pred cCCCCCEEEEEeCCCEEEEEECCCCcEeEEC--CCCCC-E--EEEEEeCCCCCEEEEEcCCC------eEEEEECCCCCc
Confidence 134 56666666778999999887654432 11111 0 12222223567778887652 367787654333
No 52
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=97.14 E-value=0.14 Score=46.30 Aligned_cols=178 Identities=8% Similarity=-0.008 Sum_probs=97.3
Q ss_pred CceEEEeccCCCCeeeCCCCCCccccccCCceeE-EeCCEEEEEcCccCCceEEEEECCCCceecCCCCCC-CccceeeE
Q 043540 148 LKEWEAFDPIHHRWMHLPPMNASDCFMCADKESL-AVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNT-PRCLFGSA 225 (437)
Q Consensus 148 ~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~-~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~-~r~~~~~~ 225 (437)
...+..||+. ++...+......... ..++ .-++.+|+... ....+++||+. ++.+... ++. ...-.+++
T Consensus 35 ~~~v~~~d~~-~~~~~~~~~~~~~~~----~~i~~~~~g~l~v~~~--~~~~i~~~~~~-g~~~~~~-~~~~~~~~~~i~ 105 (299)
T 2z2n_A 35 ANMISCINLD-GKITEYPLPTPDAKV----MCLTISSDGEVWFTEN--AANKIGRITKK-GIIKEYT-LPNPDSAPYGIT 105 (299)
T ss_dssp TTEEEEECTT-CCEEEEECSSTTCCE----EEEEECTTSCEEEEET--TTTEEEEECTT-SCEEEEE-CSSTTCCEEEEE
T ss_pred CCcEEEEcCC-CCeEEecCCcccCce----eeEEECCCCCEEEeCC--CCCeEEEECCC-CcEEEEe-CCCcCCCceeeE
Confidence 3568889988 776654321111111 1112 23567887642 13468889986 4554432 121 11222333
Q ss_pred EE-CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECC
Q 043540 226 SL-GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLE 302 (437)
Q Consensus 226 ~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~ 302 (437)
.. ++.+|+.... ...+.+||+ +++...... +........+.. +|++|+..... ..+..||+
T Consensus 106 ~~~~g~l~v~~~~------~~~i~~~d~-~g~~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~-------~~i~~~~~- 169 (299)
T 2z2n_A 106 EGPNGDIWFTEMN------GNRIGRITD-DGKIREYEL-PNKGSYPSFITLGSDNALWFTENQN-------NAIGRITE- 169 (299)
T ss_dssp ECTTSCEEEEETT------TTEEEEECT-TCCEEEEEC-SSTTCCEEEEEECTTSCEEEEETTT-------TEEEEECT-
T ss_pred ECCCCCEEEEecC------CceEEEECC-CCCEEEecC-CCCCCCCceEEEcCCCCEEEEeCCC-------CEEEEEcC-
Confidence 33 5788887532 256889998 666654422 111122233333 67899865321 35889999
Q ss_pred CCceEecCCCCCcccCCCCcccccccCCCCCEEEEE-CCEEEEEeCCCCeEEEEeCCCCcEEEc
Q 043540 303 TGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV-NNELYAADHEKEEVRKFDKGRKLWRTL 365 (437)
Q Consensus 303 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ly~~gg~~~~v~~yd~~~~~W~~v 365 (437)
+++...+.. +..... +..++.. +|+||+.....+.|.+||+ +++...+
T Consensus 170 ~g~~~~~~~-~~~~~~-------------~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~ 218 (299)
T 2z2n_A 170 SGDITEFKI-PTPASG-------------PVGITKGNDDALWFVEIIGNKIGRITT-SGEITEF 218 (299)
T ss_dssp TCCEEEEEC-SSTTCC-------------EEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE
T ss_pred CCcEEEeeC-CCCCCc-------------ceeEEECCCCCEEEEccCCceEEEECC-CCcEEEE
Confidence 777765421 111111 0223332 5789998776788999999 7777664
No 53
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.13 E-value=0.12 Score=47.43 Aligned_cols=225 Identities=13% Similarity=0.157 Sum_probs=111.0
Q ss_pred cEEEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCc
Q 043540 140 HWVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPR 219 (437)
Q Consensus 140 ~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r 219 (437)
.+++.......+..||..+.+....-.-... . .......-++.+++.|+. ...+.+||..+++-... +....
T Consensus 36 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~-~---v~~~~~~~~~~~l~s~~~--d~~i~vwd~~~~~~~~~--~~~~~ 107 (312)
T 4ery_A 36 EWLASSSADKLIKIWGAYDGKFEKTISGHKL-G---ISDVAWSSDSNLLVSASD--DKTLKIWDVSSGKCLKT--LKGHS 107 (312)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEECCCSS-C---EEEEEECTTSSEEEEEET--TSEEEEEETTTCCEEEE--EECCS
T ss_pred CEEEEeeCCCeEEEEeCCCcccchhhccCCC-c---eEEEEEcCCCCEEEEECC--CCEEEEEECCCCcEEEE--EcCCC
Confidence 3444444455677788777665432110000 0 000011124555565543 34688899887653221 11111
Q ss_pred cceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE--CCEEEEEecccCCCCccCCe
Q 043540 220 CLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTD 295 (437)
Q Consensus 220 ~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~ 295 (437)
.....+.+ ++..++.|+.+ ..+.+||..+++-.. .++........+.+ ++++++.|+.+ ..
T Consensus 108 ~~v~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~ 172 (312)
T 4ery_A 108 NYVFCCNFNPQSNLIVSGSFD------ESVRIWDVKTGKCLK--TLPAHSDPVSAVHFNRDGSLIVSSSYD-------GL 172 (312)
T ss_dssp SCEEEEEECSSSSEEEEEETT------SCEEEEETTTCCEEE--EECCCSSCEEEEEECTTSSEEEEEETT-------SC
T ss_pred CCEEEEEEcCCCCEEEEEeCC------CcEEEEECCCCEEEE--EecCCCCcEEEEEEcCCCCEEEEEeCC-------Cc
Confidence 11122222 45666777754 457889998775322 12222222233333 67777777765 24
Q ss_pred EEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEE--ECCEEEEEeCCCCeEEEEeCCCCcEEEc-cCCCCcc
Q 043540 296 VEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV--VNNELYAADHEKEEVRKFDKGRKLWRTL-GRLPEQA 372 (437)
Q Consensus 296 v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ly~~gg~~~~v~~yd~~~~~W~~v-~~lp~~~ 372 (437)
+..||+.+++-...-. ..... ....+. -+++.++.++..+.|.+||..+.+-... .......
T Consensus 173 i~~wd~~~~~~~~~~~--~~~~~-------------~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 237 (312)
T 4ery_A 173 CRIWDTASGQCLKTLI--DDDNP-------------PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 237 (312)
T ss_dssp EEEEETTTCCEEEEEC--CSSCC-------------CEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSS
T ss_pred EEEEECCCCceeeEEe--ccCCC-------------ceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCce
Confidence 8889998765432111 11111 011122 2567777777788899999988754332 1111111
Q ss_pred cCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecC
Q 043540 373 SSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPD 411 (437)
Q Consensus 373 ~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d 411 (437)
. .....+...++.+++.|+.+. .+.+|...
T Consensus 238 ~---~~~~~~~~~~~~~l~sg~~dg------~i~vwd~~ 267 (312)
T 4ery_A 238 Y---CIFANFSVTGGKWIVSGSEDN------LVYIWNLQ 267 (312)
T ss_dssp S---CCCEEEECSSSCEEEECCTTS------CEEEEETT
T ss_pred E---EEEEEEEeCCCcEEEEECCCC------EEEEEECC
Confidence 1 011223334677778887652 25566554
No 54
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=97.12 E-value=0.043 Score=50.77 Aligned_cols=246 Identities=9% Similarity=0.044 Sum_probs=112.5
Q ss_pred EEEEE-ecCceEEEeccC-CCCeeeCCCCCCccccccCCceeEEe-CCEEEEEcCccCCceEEEEECC--CCceecCCCC
Q 043540 141 WVYFS-CKLKEWEAFDPI-HHRWMHLPPMNASDCFMCADKESLAV-GTELLVFGKEVHGNAIYRYNLL--TNTWSTGMTM 215 (437)
Q Consensus 141 ~l~~~-~~~~~~~~yDp~-~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~v~~yd~~--t~~W~~~~~~ 215 (437)
.+|+. .....+..||.. +++...+...+....... ....- +..||+.+.. ...+.+|+.. +++++.+..+
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~spdg~~l~~~~~~--~~~v~~~~~~~~~~~~~~~~~~ 80 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQP---MVVSPDKRYLYVGVRP--EFRVLAYRIAPDDGALTFAAES 80 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCC---EEECTTSSEEEEEETT--TTEEEEEEECTTTCCEEEEEEE
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCce---EEECCCCCEEEEeecC--CCeEEEEEecCCCCceeecccc
Confidence 44554 234667778764 344443322221111111 11222 3446665532 2567777765 7777765443
Q ss_pred CCCccceeeEEE-CC-EEEEEeccCCCCCCCceEEEEECCCCc-EEecCCCCcCCcCeeEEEE-CC-EEEEEecccCCCC
Q 043540 216 NTPRCLFGSASL-GE-IAILAGGCDPRGKLLKSAELYNSITGT-WMPISSMHKARKMCSGVFM-DG-KFYVIGGIGEGSS 290 (437)
Q Consensus 216 ~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~r~~~~~~~~-~g-~lyv~GG~~~~~~ 290 (437)
+.......++.- ++ .+|+.+.. ...+.+||...+. .+.+............++. +| .||+.+...
T Consensus 81 ~~~~~~~~~~~s~dg~~l~~~~~~------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~---- 150 (343)
T 1ri6_A 81 ALPGSLTHISTDHQGQFVFVGSYN------AGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQ---- 150 (343)
T ss_dssp ECSSCCSEEEECTTSSEEEEEETT------TTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGG----
T ss_pred ccCCCCcEEEEcCCCCEEEEEecC------CCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCC----
Confidence 322221222222 33 46666432 2557888874322 2222222221122222232 44 576665232
Q ss_pred ccCCeEEEEECCC-CceEecC--CCCCcccCCCCcccccccCCCCCEEEEE-CC-EEEEEeCCCCeEEEEeCC--CCcEE
Q 043540 291 AMLTDVEMYDLET-GKWTQIT--DMFPARIGSDGVSVISAAGEAPPLLAVV-NN-ELYAADHEKEEVRKFDKG--RKLWR 363 (437)
Q Consensus 291 ~~~~~v~~yd~~~-~~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~ly~~gg~~~~v~~yd~~--~~~W~ 363 (437)
..+..||+.+ ++...+. ........ .+..++.. ++ .||+.+...+.+.+||.. +.++.
T Consensus 151 ---~~v~~~d~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~ 215 (343)
T 1ri6_A 151 ---DRICLFTVSDDGHLVAQDPAEVTTVEGA------------GPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE 215 (343)
T ss_dssp ---TEEEEEEECTTSCEEEEEEEEEECSTTC------------CEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE
T ss_pred ---CEEEEEEecCCCceeeecccccccCCCC------------CcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEE
Confidence 3588999987 6665432 11110000 00112222 44 477877677889999984 44443
Q ss_pred E---ccCCCCcccCCCc-ccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCceecCc
Q 043540 364 T---LGRLPEQASSMNG-WGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKLLAR 422 (437)
Q Consensus 364 ~---v~~lp~~~~~~~~-~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~ 422 (437)
. +..++........ .+.++..-+..||+.+... ..+.+|.++..+.+++.+..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~------~~i~v~d~~~~~~~~~~~~~ 272 (343)
T 1ri6_A 216 CVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA------SLITVFSVSEDGSVLSKEGF 272 (343)
T ss_dssp EEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT------TEEEEEEECTTSCCEEEEEE
T ss_pred EEeeccccCccccccCCccceEECCCCCEEEEEecCC------CEEEEEEEcCCCCceEEeee
Confidence 3 3333332110000 0122222234677665322 24667777654556665543
No 55
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.12 E-value=0.02 Score=51.94 Aligned_cols=109 Identities=7% Similarity=-0.142 Sum_probs=74.7
Q ss_pred eeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECC
Q 043540 223 GSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLE 302 (437)
Q Consensus 223 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~ 302 (437)
+....++.+|+..|.+ ..+.++|++|++=..-- ++..-...+.+..+++||++.... +.+.+||++
T Consensus 59 GL~~~~~~Ly~stG~~------g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~-------~~v~V~D~~ 124 (268)
T 3nok_A 59 GLVFHQGHFFESTGHQ------GTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTE-------GLLFTWSGM 124 (268)
T ss_dssp EEEEETTEEEEEETTT------TEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSS-------CEEEEEETT
T ss_pred eEEEECCEEEEEcCCC------CEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccC-------CEEEEEECC
Confidence 5556689999998854 23889999998743222 443333445667789999986543 469999998
Q ss_pred CCceE-ecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCcEE
Q 043540 303 TGKWT-QITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKLWR 363 (437)
Q Consensus 303 ~~~W~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~W~ 363 (437)
+.+-. +++- +..+ -+++.-+++||+..| .+.|+.+|+++.+-.
T Consensus 125 Tl~~~~ti~~---~~eG--------------wGLt~Dg~~L~vSdG-s~~l~~iDp~T~~v~ 168 (268)
T 3nok_A 125 PPQRERTTRY---SGEG--------------WGLCYWNGKLVRSDG-GTMLTFHEPDGFALV 168 (268)
T ss_dssp TTEEEEEEEC---SSCC--------------CCEEEETTEEEEECS-SSEEEEECTTTCCEE
T ss_pred cCcEEEEEeC---CCce--------------eEEecCCCEEEEECC-CCEEEEEcCCCCeEE
Confidence 86543 2322 2122 346667889999986 789999999987543
No 56
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=97.11 E-value=0.041 Score=53.14 Aligned_cols=151 Identities=13% Similarity=0.067 Sum_probs=87.3
Q ss_pred EEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEE-CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCC-
Q 043540 187 LLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL-GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMH- 264 (437)
Q Consensus 187 lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~- 264 (437)
+|+.|+......++.+|+.+++++.+..++......+++.. ++.+++.++.+ ..+.+||..+++........
T Consensus 91 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~------~~i~~~d~~~g~~~~~~~~~~ 164 (433)
T 3bws_A 91 YRIRKPEELNEKLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPLLED------EGMDVLDINSGQTVRLSPPEK 164 (433)
T ss_dssp EEESSGGGGTTCEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEEBTTS------SSEEEEETTTCCEEEECCCHH
T ss_pred eeecccCCCceEEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEEeCCC------CeEEEEECCCCeEeeecCccc
Confidence 33344333344788899887766665443333222223222 67888877643 45899999998876543322
Q ss_pred --cCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE--
Q 043540 265 --KARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV-- 338 (437)
Q Consensus 265 --~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 338 (437)
........+.+ ++++++.++.+ ..+..||+.+.+-...-.... .. ...++..
T Consensus 165 ~~~~~~~v~~~~~~~~~~~~~s~~~d-------~~v~~~d~~~~~~~~~~~~~~--~~-------------~~~~~~~~~ 222 (433)
T 3bws_A 165 YKKKLGFVETISIPEHNELWVSQMQA-------NAVHVFDLKTLAYKATVDLTG--KW-------------SKILLYDPI 222 (433)
T ss_dssp HHTTCCEEEEEEEGGGTEEEEEEGGG-------TEEEEEETTTCCEEEEEECSS--SS-------------EEEEEEETT
T ss_pred ccccCCceeEEEEcCCCEEEEEECCC-------CEEEEEECCCceEEEEEcCCC--CC-------------eeEEEEcCC
Confidence 11222223334 78999888764 368999998765432211100 01 0123332
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCcEEEc
Q 043540 339 NNELYAADHEKEEVRKFDKGRKLWRTL 365 (437)
Q Consensus 339 ~~~ly~~gg~~~~v~~yd~~~~~W~~v 365 (437)
+..+|+.+...+.|.+||+.+.+....
T Consensus 223 ~~~l~~~~~~~~~i~~~d~~~~~~~~~ 249 (433)
T 3bws_A 223 RDLVYCSNWISEDISVIDRKTKLEIRK 249 (433)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCEEEEEecCCCcEEEEECCCCcEEEE
Confidence 346777776778999999988766543
No 57
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.10 E-value=0.032 Score=59.16 Aligned_cols=233 Identities=10% Similarity=-0.011 Sum_probs=122.7
Q ss_pred ceEEEeccCCCCeeeCCCCCCccccccCCceeEE-eCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccc-eeeEE
Q 043540 149 KEWEAFDPIHHRWMHLPPMNASDCFMCADKESLA-VGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCL-FGSAS 226 (437)
Q Consensus 149 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~-~~~~~ 226 (437)
.-+..||+.++++..... +........ .+++. .++.|++-. ...-+++||+.+++++.......+... .+.+.
T Consensus 383 ~Gl~~~~~~~~~~~~~~~-~~~~~~~~v-~~i~~d~~g~lWigt---~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 457 (781)
T 3v9f_A 383 GGINVFENGKRVAIYNKE-NRELLSNSV-LCSLKDSEGNLWFGT---YLGNISYYNTRLKKFQIIELEKNELLDVRVFYE 457 (781)
T ss_dssp SCEEEEETTEEEEECC------CCCSBE-EEEEECTTSCEEEEE---TTEEEEEECSSSCEEEECCSTTTCCCCEEEEEE
T ss_pred CcEEEEECCCCeEEEccC-CCCCCCcce-EEEEECCCCCEEEEe---ccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEE
Confidence 446778887776655421 111100000 11122 256777632 224689999999999877532111111 22222
Q ss_pred E-CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCC---cCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEE
Q 043540 227 L-GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMH---KARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYD 300 (437)
Q Consensus 227 ~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~---~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd 300 (437)
- ++.||+... ..+.+||+.+++|+...... ........+.. +|.|++..... -+.+||
T Consensus 458 d~~g~lwigt~--------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~--------Gl~~~~ 521 (781)
T 3v9f_A 458 DKNKKIWIGTH--------AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGG--------GVGIYT 521 (781)
T ss_dssp CTTSEEEEEET--------TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSS--------CEEEEC
T ss_pred CCCCCEEEEEC--------CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCC--------CEEEEe
Confidence 2 467776431 45889999999887654322 11112222333 57787753211 288899
Q ss_pred CCCCceEecCCCCCcccCCCCcccccccCCCCCEEEE-ECCEEEEEeCCCCeE-EEEeCCCCcEEEccC---CCCcccCC
Q 043540 301 LETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV-VNNELYAADHEKEEV-RKFDKGRKLWRTLGR---LPEQASSM 375 (437)
Q Consensus 301 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~~~v-~~yd~~~~~W~~v~~---lp~~~~~~ 375 (437)
+.+++++.+... ..... .....++. -+|.|++... ..+ .+||+++++++.... +|....
T Consensus 522 ~~~~~~~~~~~~-~~l~~-----------~~i~~i~~d~~g~lWi~T~--~Glv~~~d~~~~~~~~~~~~~gl~~~~i-- 585 (781)
T 3v9f_A 522 PDMQLVRKFNQY-EGFCS-----------NTINQIYRSSKGQMWLATG--EGLVCFPSARNFDYQVFQRKEGLPNTHI-- 585 (781)
T ss_dssp TTCCEEEEECTT-TTCSC-----------SCEEEEEECTTSCEEEEET--TEEEEESCTTTCCCEEECGGGTCSCCCC--
T ss_pred CCCCeEEEccCC-CCCCC-----------CeeEEEEECCCCCEEEEEC--CCceEEECCCCCcEEEccccCCCCCceE--
Confidence 999998877531 11111 00012222 3678887653 567 999999998887642 332221
Q ss_pred CcccEEEEE-eCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCceec---CccCCCceEeee
Q 043540 376 NGWGLAFRA-CGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKLL---ARQPMCGFVFNC 432 (437)
Q Consensus 376 ~~~~~a~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~l---~~~p~~~~~~~~ 432 (437)
.+++. -++.|++.+.. + +..||+.+.+++.. ..+|...|..++
T Consensus 586 ----~~i~~d~~g~lW~~t~~-----G-----l~~~~~~~~~~~~~~~~dGl~~~~f~~~~ 632 (781)
T 3v9f_A 586 ----RAISEDKNGNIWASTNT-----G-----ISCYITSKKCFYTYDHSNNIPQGSFISGC 632 (781)
T ss_dssp ----CEEEECSSSCEEEECSS-----C-----EEEEETTTTEEEEECGGGTCCSSCEEEEE
T ss_pred ----EEEEECCCCCEEEEcCC-----c-----eEEEECCCCceEEecccCCccccccccCc
Confidence 12222 35788887532 1 45567766665554 235555444333
No 58
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=97.09 E-value=0.16 Score=45.99 Aligned_cols=179 Identities=8% Similarity=0.017 Sum_probs=97.7
Q ss_pred CceEEEeccCCCCeeeCCCCCCccccccCCceeE-EeCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEE
Q 043540 148 LKEWEAFDPIHHRWMHLPPMNASDCFMCADKESL-AVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSAS 226 (437)
Q Consensus 148 ~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~-~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~ 226 (437)
...+..||+. ++...++. +...... ..++ .-++.+|+... ....+++||+. ++++...........++++.
T Consensus 40 ~~~v~~~~~~-~~~~~~~~-~~~~~~~---~~i~~~~~g~l~v~~~--~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~ 111 (300)
T 2qc5_A 40 ANKISSLDQS-GRIKEFEV-PTPDAKV---MCLIVSSLGDIWFTEN--GANKIGKLSKK-GGFTEYPLPQPDSGPYGITE 111 (300)
T ss_dssp TTEEEEECTT-SCEEEEEC-SSTTCCE---EEEEECTTSCEEEEET--TTTEEEEECTT-SCEEEEECSSTTCCEEEEEE
T ss_pred CCeEEEECCC-CceEEEEC-CCCCCcc---eeEEECCCCCEEEEec--CCCeEEEECCC-CCeEEecCCCCCCCCccceE
Confidence 3568889988 66654321 2111100 1112 23567888642 23568999988 66654321111122233333
Q ss_pred E-CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCC
Q 043540 227 L-GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLET 303 (437)
Q Consensus 227 ~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~ 303 (437)
- ++.+|+.... ...+.+||+. ++..... ++........+.+ +|+||+..... ..+..||+ +
T Consensus 112 ~~~g~l~v~~~~------~~~i~~~~~~-g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~~-------~~i~~~~~-~ 175 (300)
T 2qc5_A 112 GLNGDIWFTQLN------GDRIGKLTAD-GTIYEYD-LPNKGSYPAFITLGSDNALWFTENQN-------NSIGRITN-T 175 (300)
T ss_dssp CSTTCEEEEETT------TTEEEEECTT-SCEEEEE-CSSTTCCEEEEEECTTSSEEEEETTT-------TEEEEECT-T
T ss_pred CCCCCEEEEccC------CCeEEEECCC-CCEEEcc-CCCCCCCceeEEECCCCCEEEEecCC-------CeEEEECC-C
Confidence 3 5788887532 2568889987 6665432 2211222233333 57888875322 35889998 6
Q ss_pred CceEecCCCCCcccCCCCcccccccCCCCCEEEEE-CCEEEEEeCCCCeEEEEeCCCCcEEEc
Q 043540 304 GKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV-NNELYAADHEKEEVRKFDKGRKLWRTL 365 (437)
Q Consensus 304 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ly~~gg~~~~v~~yd~~~~~W~~v 365 (437)
++...+. ++..... +..++.. +|.||+.....+.|.+||+ ++++..+
T Consensus 176 g~~~~~~-~~~~~~~-------------~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~ 223 (300)
T 2qc5_A 176 GKLEEYP-LPTNAAA-------------PVGITSGNDGALWFVEIMGNKIGRITT-TGEISEY 223 (300)
T ss_dssp CCEEEEE-CSSTTCC-------------EEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE
T ss_pred CcEEEee-CCCCCCC-------------cceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEE
Confidence 6666543 1111111 0223332 6789998776778999999 6666654
No 59
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.07 E-value=0.16 Score=49.51 Aligned_cols=184 Identities=10% Similarity=0.080 Sum_probs=97.2
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEE-ECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCC
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSAS-LGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISS 262 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 262 (437)
++..++.|+. ...+.+||..+.+-...-...... -.+++. -++..++.|+.+ ..+.+||..+++-. ..
T Consensus 279 ~~~~l~~~~~--d~~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~sg~~d------g~i~vwd~~~~~~~--~~ 347 (464)
T 3v7d_B 279 HGNIVVSGSY--DNTLIVWDVAQMKCLYILSGHTDR-IYSTIYDHERKRCISASMD------TTIRIWDLENGELM--YT 347 (464)
T ss_dssp ETTEEEEEET--TSCEEEEETTTTEEEEEECCCSSC-EEEEEEETTTTEEEEEETT------SCEEEEETTTTEEE--EE
T ss_pred CCCEEEEEeC--CCeEEEEECCCCcEEEEecCCCCC-EEEEEEcCCCCEEEEEeCC------CcEEEEECCCCcEE--EE
Confidence 3444455532 346888998776533211111111 112222 245666676654 45889999887532 22
Q ss_pred CCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEE
Q 043540 263 MHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNEL 342 (437)
Q Consensus 263 ~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 342 (437)
+.........+..+++..+.|+.+ ..+..||+.+..-....... .... ......++++
T Consensus 348 ~~~h~~~v~~~~~~~~~l~s~s~d-------g~v~vwd~~~~~~~~~~~~~-~~~~--------------~~~~~~~~~~ 405 (464)
T 3v7d_B 348 LQGHTALVGLLRLSDKFLVSAAAD-------GSIRGWDANDYSRKFSYHHT-NLSA--------------ITTFYVSDNI 405 (464)
T ss_dssp ECCCSSCEEEEEECSSEEEEEETT-------SEEEEEETTTCCEEEEEECT-TCCC--------------EEEEEECSSE
T ss_pred EeCCCCcEEEEEEcCCEEEEEeCC-------CcEEEEECCCCceeeeecCC-CCcc--------------EEEEEeCCCE
Confidence 222333445566677777777765 35889999875422211100 0111 2244557777
Q ss_pred EEEeCCCCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeec
Q 043540 343 YAADHEKEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVP 410 (437)
Q Consensus 343 y~~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~ 410 (437)
++.|+ .+.|.+||.++++-......+.... -.++...++.+++.++. ++...+.+++|
T Consensus 406 l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~-----v~~v~~~~~~l~~~~~~----~g~~~i~~ldf 463 (464)
T 3v7d_B 406 LVSGS-ENQFNIYNLRSGKLVHANILKDADQ-----IWSVNFKGKTLVAAVEK----DGQSFLEILDF 463 (464)
T ss_dssp EEEEE-TTEEEEEETTTCCEEESCTTTTCSE-----EEEEEEETTEEEEEEEE----TTEEEEEEEEC
T ss_pred EEEec-CCeEEEEECCCCcEEehhhccCCCc-----EEEEEecCCEEEEEEEe----CCeEEEEEeec
Confidence 77776 6789999999987654322222111 12333346666666553 34444555544
No 60
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.05 E-value=0.16 Score=45.61 Aligned_cols=186 Identities=12% Similarity=-0.032 Sum_probs=100.7
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecC
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPIS 261 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 261 (437)
++.||+... ..+.++++++.++.-..+..... ..-+++++- ++.||+.-.. ...+.++|+....-+.+.
T Consensus 47 ~~~ly~~d~--~~~~I~~~~~~g~~~~~~~~~~~-~~p~~ia~d~~~~~lyv~d~~------~~~I~~~~~~g~~~~~~~ 117 (267)
T 1npe_A 47 DKVVYWTDI--SEPSIGRASLHGGEPTTIIRQDL-GSPEGIALDHLGRTIFWTDSQ------LDRIEVAKMDGTQRRVLF 117 (267)
T ss_dssp TTEEEEEET--TTTEEEEEESSSCCCEEEECTTC-CCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEE
T ss_pred CCEEEEEEC--CCCEEEEEecCCCCcEEEEECCC-CCccEEEEEecCCeEEEEECC------CCEEEEEEcCCCCEEEEE
Confidence 578998752 34679999987654332211110 112344443 5799998542 367889998754433332
Q ss_pred CCCcCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE-
Q 043540 262 SMHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV- 338 (437)
Q Consensus 262 ~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 338 (437)
.... ......++- ++.||+..... ....++++++....-+.+.... ... +..+++-
T Consensus 118 ~~~~-~~P~~i~vd~~~g~lyv~~~~~-----~~~~I~~~~~dg~~~~~~~~~~--~~~-------------P~gia~d~ 176 (267)
T 1npe_A 118 DTGL-VNPRGIVTDPVRGNLYWTDWNR-----DNPKIETSHMDGTNRRILAQDN--LGL-------------PNGLTFDA 176 (267)
T ss_dssp CSSC-SSEEEEEEETTTTEEEEEECCS-----SSCEEEEEETTSCCCEEEECTT--CSC-------------EEEEEEET
T ss_pred ECCC-CCccEEEEeeCCCEEEEEECCC-----CCcEEEEEecCCCCcEEEEECC--CCC-------------CcEEEEcC
Confidence 1111 111233333 68999985321 1246888887654333332111 111 1334443
Q ss_pred -CCEEEEEeCCCCeEEEEeCCCCcEEEcc-CCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCC
Q 043540 339 -NNELYAADHEKEEVRKFDKGRKLWRTLG-RLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGPP 415 (437)
Q Consensus 339 -~~~ly~~gg~~~~v~~yd~~~~~W~~v~-~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~ 415 (437)
+++||+.....+.|.++|+....-..+. .+..+ .+. +..++.||+..... + .++++|+.+.
T Consensus 177 ~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P------~gi--~~d~~~lyva~~~~----~----~v~~~d~~~g 239 (267)
T 1npe_A 177 FSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYP------FAV--TSYGKNLYYTDWKT----N----SVIAMDLAIS 239 (267)
T ss_dssp TTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSE------EEE--EEETTEEEEEETTT----T----EEEEEETTTT
T ss_pred CCCEEEEEECCCCEEEEEecCCCceEEEecCCCCc------eEE--EEeCCEEEEEECCC----C----eEEEEeCCCC
Confidence 5799999888889999999864332222 11111 233 34588999975322 1 2566665543
No 61
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.012 Score=55.59 Aligned_cols=194 Identities=9% Similarity=0.049 Sum_probs=103.8
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEE--C--CEEEEEeccCCCCCCCceEEEEECCCCcEEe
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL--G--EIAILAGGCDPRGKLLKSAELYNSITGTWMP 259 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 259 (437)
++..++.|+. ...+.+||...++++.+..+........+..+ + +.+++.|+.+ ..+.+||..+++|..
T Consensus 22 ~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~v~iwd~~~~~~~~ 93 (379)
T 3jrp_A 22 YGKRLATCSS--DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD------GKVLIWKEENGRWSQ 93 (379)
T ss_dssp SSSEEEEEET--TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT------SCEEEEEEETTEEEE
T ss_pred CCCEEEEEEC--CCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC------CEEEEEEcCCCceeE
Confidence 3444555543 23577788776666555433322222233333 2 5677777754 457889999998877
Q ss_pred cCCCCcCCcCeeEEEE--C--CEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEE
Q 043540 260 ISSMHKARKMCSGVFM--D--GKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLL 335 (437)
Q Consensus 260 ~~~~~~~r~~~~~~~~--~--g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (437)
+..+.........+.+ + +.+++.|+.+ ..+..||+.+..-.....+...... + ..+
T Consensus 94 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-------~~i~v~d~~~~~~~~~~~~~~~~~~----v---------~~~ 153 (379)
T 3jrp_A 94 IAVHAVHSASVNSVQWAPHEYGPLLLVASSD-------GKVSVVEFKENGTTSPIIIDAHAIG----V---------NSA 153 (379)
T ss_dssp EEEECCCSSCEEEEEECCGGGCSEEEEEETT-------SEEEEEECCTTSCCCEEEEECCTTC----E---------EEE
T ss_pred eeeecCCCcceEEEEeCCCCCCCEEEEecCC-------CcEEEEecCCCCceeeEEecCCCCc----e---------EEE
Confidence 6555443333444433 3 6677777654 3588899887632111000000000 0 111
Q ss_pred EEE--------------CCEEEEEeCCCCeEEEEeCCCC--cEEEccCCCCcccCCCcccEEEEEe-C---CEEEEEcCC
Q 043540 336 AVV--------------NNELYAADHEKEEVRKFDKGRK--LWRTLGRLPEQASSMNGWGLAFRAC-G---DQLIVIGGP 395 (437)
Q Consensus 336 ~~~--------------~~~ly~~gg~~~~v~~yd~~~~--~W~~v~~lp~~~~~~~~~~~a~~~~-~---~~l~v~GG~ 395 (437)
+.. ++.+++.|+....|.+||..+. .|..+..+...... -.+++.. + +.+++.|+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~----v~~~~~sp~~~~~~~l~s~~~ 229 (379)
T 3jrp_A 154 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW----VRDVAWSPTVLLRSYLASVSQ 229 (379)
T ss_dssp EECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC----EEEEEECCCCSSSEEEEEEET
T ss_pred EEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCc----EeEEEECCCCCCCCeEEEEeC
Confidence 211 4777888877788999998654 35555443322211 1222222 3 677787775
Q ss_pred CCCCCCeeEEEeeecCCCCC
Q 043540 396 RDSGGGIVELNGWVPDEGPP 415 (437)
Q Consensus 396 ~~~~~~~~~~~~~~~d~~~~ 415 (437)
+. .+.+|.++....
T Consensus 230 dg------~i~iwd~~~~~~ 243 (379)
T 3jrp_A 230 DR------TCIIWTQDNEQG 243 (379)
T ss_dssp TS------CEEEEEESSTTS
T ss_pred CC------EEEEEeCCCCCc
Confidence 42 367777765443
No 62
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=97.03 E-value=0.042 Score=51.62 Aligned_cols=241 Identities=11% Similarity=0.107 Sum_probs=116.7
Q ss_pred cEEEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCc
Q 043540 140 HWVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPR 219 (437)
Q Consensus 140 ~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r 219 (437)
.++++......+..||..++++..+..+........ .....-++.+++.|+. ...+.+||..++++.....+....
T Consensus 21 ~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~--~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~ 96 (372)
T 1k8k_C 21 TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVT--GVDWAPDSNRIVTCGT--DRNAYVWTLKGRTWKPTLVILRIN 96 (372)
T ss_dssp SEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEE--EEEEETTTTEEEEEET--TSCEEEEEEETTEEEEEEECCCCS
T ss_pred CEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCccc--EEEEeCCCCEEEEEcC--CCeEEEEECCCCeeeeeEEeecCC
Confidence 445555456778889988886654433322111100 0112224555555543 346888998888765443222111
Q ss_pred cceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCc-EEecCCCCcC-CcCeeEEEE--CCEEEEEecccCCCCccC
Q 043540 220 CLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGT-WMPISSMHKA-RKMCSGVFM--DGKFYVIGGIGEGSSAML 293 (437)
Q Consensus 220 ~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~-r~~~~~~~~--~g~lyv~GG~~~~~~~~~ 293 (437)
.....+.+ ++..+++|+.+ ..+.+||..+.. |........+ ......+.+ ++++++.|+.+
T Consensus 97 ~~v~~~~~~~~~~~l~~~~~d------~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------- 163 (372)
T 1k8k_C 97 RAARCVRWAPNEKKFAVGSGS------RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD------- 163 (372)
T ss_dssp SCEEEEEECTTSSEEEEEETT------SSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT-------
T ss_pred CceeEEEECCCCCEEEEEeCC------CEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC-------
Confidence 22222222 45666676643 345666665544 3332222221 122223333 67777777654
Q ss_pred CeEEEEECCCCc---------eEe-------cCCCCCcccCCCCcccccccCCCCCEEEEE--CCEEEEEeCCCCeEEEE
Q 043540 294 TDVEMYDLETGK---------WTQ-------ITDMFPARIGSDGVSVISAAGEAPPLLAVV--NNELYAADHEKEEVRKF 355 (437)
Q Consensus 294 ~~v~~yd~~~~~---------W~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ly~~gg~~~~v~~y 355 (437)
..+..||+.... |.. +..+... .. ....+.+ ++.+++.++..+.|.+|
T Consensus 164 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------------~v~~~~~~~~~~~l~~~~~d~~i~i~ 229 (372)
T 1k8k_C 164 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS-CG-------------WVHGVCFSANGSRVAWVSHDSTVCLA 229 (372)
T ss_dssp SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC-SS-------------CEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred CCEEEEEcccccccccccccccccccchhhheEecCCC-CC-------------eEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 247888865321 111 1111100 00 0112222 56677777777889999
Q ss_pred eCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCceecCcc
Q 043540 356 DKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKLLARQ 423 (437)
Q Consensus 356 d~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~ 423 (437)
|..+.+-...-....... ...++ .-++++++.| .+ + .+.+|.++....+|..+..+
T Consensus 230 d~~~~~~~~~~~~~~~~v----~~~~~-~~~~~~l~~~-~d----~--~i~i~~~~~~~~~~~~~~~~ 285 (372)
T 1k8k_C 230 DADKKMAVATLASETLPL----LAVTF-ITESSLVAAG-HD----C--FPVLFTYDSAAGKLSFGGRL 285 (372)
T ss_dssp EGGGTTEEEEEECSSCCE----EEEEE-EETTEEEEEE-TT----S--SCEEEEEETTTTEEEECCCC
T ss_pred ECCCCceeEEEccCCCCe----EEEEE-ecCCCEEEEE-eC----C--eEEEEEccCcCceEEEeecc
Confidence 998765332211111110 12222 2366766666 32 1 24567665434677666443
No 63
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=97.00 E-value=0.0075 Score=56.71 Aligned_cols=194 Identities=11% Similarity=0.014 Sum_probs=97.9
Q ss_pred eEEEEECCCCceecCCCCCCCccceeeE-EECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCC-cCeeEEEE
Q 043540 198 AIYRYNLLTNTWSTGMTMNTPRCLFGSA-SLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKAR-KMCSGVFM 275 (437)
Q Consensus 198 ~v~~yd~~t~~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r-~~~~~~~~ 275 (437)
.++.+|..+++++.+........-..++ .-++++|+.+.... ...+.+||..+++++.+....... .....++.
T Consensus 19 ~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~----~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~s 94 (347)
T 3hfq_A 19 YQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDD----EGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVD 94 (347)
T ss_dssp EEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEETT----EEEEEEEEEETTEEEEEEEEEEESCCCSEEEEE
T ss_pred EEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecCC----CceEEEEEecCCcEEEeeeeecCCCCCEEEEEC
Confidence 4677888888887643211111111222 22677887754311 267899999888887765533222 22233333
Q ss_pred -CCE-EEEEecccCCCCccCCeEEEEECC-CCceEecCCCCC------cccCCCCcccccccCCCCCEEEE-ECCEEEEE
Q 043540 276 -DGK-FYVIGGIGEGSSAMLTDVEMYDLE-TGKWTQITDMFP------ARIGSDGVSVISAAGEAPPLLAV-VNNELYAA 345 (437)
Q Consensus 276 -~g~-lyv~GG~~~~~~~~~~~v~~yd~~-~~~W~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~ 345 (437)
+|+ ||+.+... ..+..||+. +++.+.+..+.. .+.. ......++. -+|++|+.
T Consensus 95 pdg~~l~~~~~~~-------~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~----------~~~~~~~~~spdg~l~v~ 157 (347)
T 3hfq_A 95 EARQLVYSANYHK-------GTAEVMKIAADGALTLTDTVQHSGHGPRPEQD----------GSHIHYTDLTPDNRLAVI 157 (347)
T ss_dssp TTTTEEEEEETTT-------TEEEEEEECTTSCEEEEEEEECCCCCSSTTCS----------SCCEEEEEECTTSCEEEE
T ss_pred CCCCEEEEEeCCC-------CEEEEEEeCCCCCeeecceeecCCCCCCcccc----------CCCceEEEECCCCcEEEE
Confidence 555 66654222 357788874 334443322111 1110 000012222 26778888
Q ss_pred eCCCCeEEEEeCC-CCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCcee
Q 043540 346 DHEKEEVRKFDKG-RKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKL 419 (437)
Q Consensus 346 gg~~~~v~~yd~~-~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~ 419 (437)
+...+.|.+||.. +++...+......... ...+.++..-+..||+.+... ..+.+|.++..+.+++.
T Consensus 158 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~-~p~~~~~spdg~~l~v~~~~~------~~v~v~~~~~~~g~~~~ 225 (347)
T 3hfq_A 158 DLGSDKVYVYNVSDAGQLSEQSVLTMEAGF-GPRHLVFSPDGQYAFLAGELS------SQIASLKYDTQTGAFTQ 225 (347)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECCTTC-CEEEEEECTTSSEEEEEETTT------TEEEEEEEETTTTEEEE
T ss_pred eCCCCEEEEEEECCCCcEEEeeeEEcCCCC-CCceEEECCCCCEEEEEeCCC------CEEEEEEecCCCCceEE
Confidence 8777889999988 5666554322111100 001233322234588775322 24567777765555543
No 64
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=96.99 E-value=0.23 Score=46.19 Aligned_cols=207 Identities=12% Similarity=0.084 Sum_probs=112.2
Q ss_pred cEEEEEecCceEEEeccCCCCeeeC-CCCCCccccccCCceeEE--eCCEEEEEcCccCCceEEEEECCC----CceecC
Q 043540 140 HWVYFSCKLKEWEAFDPIHHRWMHL-PPMNASDCFMCADKESLA--VGTELLVFGKEVHGNAIYRYNLLT----NTWSTG 212 (437)
Q Consensus 140 ~~l~~~~~~~~~~~yDp~~~~W~~l-~~~p~~~~~~~~~~~~~~--~~~~lyv~GG~~~~~~v~~yd~~t----~~W~~~ 212 (437)
++|++.. ..++..+|+.+.....+ +.+..+. .++. .++.||+... ....++++++.+ ..-..+
T Consensus 2 ~~ll~~~-~~~I~~i~~~~~~~~~~~~~~~~p~-------g~~~d~~~~~ly~~D~--~~~~I~~~~~~g~~~~~~~~~~ 71 (316)
T 1ijq_A 2 AYLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVV-------ALDTEVASNRIYWSDL--SQRMICSTQLDRAHGVSSYDTV 71 (316)
T ss_dssp CEEEEEC-BSSEEEEETTSCCCEEEECSCSSEE-------EEEEETTTTEEEEEET--TTTEEEEEEC--------CEEE
T ss_pred CEEEEEC-CCeEEEEECCCcceEehhcCCCceE-------EEEEEeCCCEEEEEEC--CCCcEEEEECCCCCCCcccEEE
Confidence 4555543 36788889888776543 2222221 1122 2578998752 346789999876 222222
Q ss_pred -C-CCCCCccceeeEE--ECCEEEEEeccCCCCCCCceEEEEECCCCcEEecC--CCCcCCcCeeEEEE--CCEEEEEec
Q 043540 213 -M-TMNTPRCLFGSAS--LGEIAILAGGCDPRGKLLKSAELYNSITGTWMPIS--SMHKARKMCSGVFM--DGKFYVIGG 284 (437)
Q Consensus 213 -~-~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~--~~~~~r~~~~~~~~--~g~lyv~GG 284 (437)
+ .+..| .+.++ .++.||+.-.. ...++++|+....-+.+. .+..+ ...++- ++.||+...
T Consensus 72 ~~~~~~~p---~glavd~~~~~ly~~d~~------~~~I~~~~~~g~~~~~~~~~~~~~P---~~iavdp~~g~ly~~d~ 139 (316)
T 1ijq_A 72 ISRDIQAP---DGLAVDWIHSNIYWTDSV------LGTVSVADTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDW 139 (316)
T ss_dssp ECSSCSCC---CEEEEETTTTEEEEEETT------TTEEEEEETTSSSEEEEEECTTCCE---EEEEEETTTTEEEEEEC
T ss_pred EeCCCCCc---CEEEEeecCCeEEEEECC------CCEEEEEeCCCCceEEEEECCCCCc---ceEEeCCCCCEEEEEcc
Confidence 1 22222 34444 47899998432 367889998765443332 22221 233332 689998752
Q ss_pred ccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE--CCEEEEEeCCCCeEEEEeCCCCcE
Q 043540 285 IGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV--NNELYAADHEKEEVRKFDKGRKLW 362 (437)
Q Consensus 285 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ly~~gg~~~~v~~yd~~~~~W 362 (437)
.. ...++++++....-+.+... ... .+.++++- +++||+.+.....|+++|.....-
T Consensus 140 ~~------~~~I~~~~~dG~~~~~~~~~--~~~-------------~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~ 198 (316)
T 1ijq_A 140 GT------PAKIKKGGLNGVDIYSLVTE--NIQ-------------WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR 198 (316)
T ss_dssp SS------SCEEEEEETTSCCEEEEECS--SCS-------------CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CC------CCeEEEEcCCCCCeEEEEEC--CCC-------------CceEEEEeccCCEEEEEECCCCeEEEEecCCCce
Confidence 11 24689998865443333211 111 11345554 689999998888999999976443
Q ss_pred EEccCCCCcccCCCcccEEEEEeCCEEEEEc
Q 043540 363 RTLGRLPEQASSMNGWGLAFRACGDQLIVIG 393 (437)
Q Consensus 363 ~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~G 393 (437)
+.+........ +.+|.+ +.++.||+.-
T Consensus 199 ~~~~~~~~~~~--~P~gia--v~~~~ly~~d 225 (316)
T 1ijq_A 199 KTILEDEKRLA--HPFSLA--VFEDKVFWTD 225 (316)
T ss_dssp EEEEECTTTTS--SEEEEE--EETTEEEEEE
T ss_pred EEEeecCCccC--CcEEEE--EECCEEEEEE
Confidence 33322111111 112444 4678999875
No 65
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.98 E-value=0.11 Score=54.92 Aligned_cols=229 Identities=10% Similarity=0.039 Sum_probs=121.8
Q ss_pred ceEEEeccCCCCeeeCCCCCCc----cccccCCceeEE-eCCE-EEEEcCccCCceEEEEECCCCceecCCCCC--CCcc
Q 043540 149 KEWEAFDPIHHRWMHLPPMNAS----DCFMCADKESLA-VGTE-LLVFGKEVHGNAIYRYNLLTNTWSTGMTMN--TPRC 220 (437)
Q Consensus 149 ~~~~~yDp~~~~W~~l~~~p~~----~~~~~~~~~~~~-~~~~-lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~--~~r~ 220 (437)
.-+..||+.++++......+.. ...... .+++. .++. |++-. ...-+++||+.+++++...... .+..
T Consensus 377 ~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v-~~i~~d~~g~~lWigt---~~~Gl~~~d~~~~~~~~~~~~~~~l~~~ 452 (795)
T 4a2l_A 377 GGLNLYNPITQRFTSYTLQEDESARGIGSNNI-KAVYVDEKKSLVYIGT---HAGGLSILHRNSGQVENFNQRNSQLVNE 452 (795)
T ss_dssp SCEEEECTTTCCEEEECCC------CCSCSCE-EEEEEETTTTEEEEEE---TTTEEEEEETTTCCEEEECTTTSCCSCS
T ss_pred CCeEEEcCCCCcEEEEecCCCCcccCCCCccE-EEEEEcCCCCEEEEEe---CcCceeEEeCCCCcEEEeecCCCCcCCC
Confidence 4577889988888766432210 000000 11122 2566 66632 2245899999999887664311 1111
Q ss_pred c-eeeEEE-CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCC----CcCCcCeeEEEE--CCEEEEEecccCCCCcc
Q 043540 221 L-FGSASL-GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSM----HKARKMCSGVFM--DGKFYVIGGIGEGSSAM 292 (437)
Q Consensus 221 ~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~----~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~ 292 (437)
. .+.+.- ++.|++... ..+.+||+.+++|+..... .........+.. +|.|++... .
T Consensus 453 ~v~~i~~d~~g~lwigt~--------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~------ 517 (795)
T 4a2l_A 453 NVYAILPDGEGNLWLGTL--------SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E------ 517 (795)
T ss_dssp CEEEEEECSSSCEEEEES--------SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S------
T ss_pred eeEEEEECCCCCEEEEec--------CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C------
Confidence 1 122222 467776532 3478999999999887533 111112223333 578888643 2
Q ss_pred CCeEEEEECCCCceEecCCC--CCcccCCCCcccccccCCCCCEEEE-ECCEEEEEeCCCCeEEEEeCCCCcEEEccC--
Q 043540 293 LTDVEMYDLETGKWTQITDM--FPARIGSDGVSVISAAGEAPPLLAV-VNNELYAADHEKEEVRKFDKGRKLWRTLGR-- 367 (437)
Q Consensus 293 ~~~v~~yd~~~~~W~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~~~v~~yd~~~~~W~~v~~-- 367 (437)
.+..||+.++++ .+... ...... .....++. -+|.|++... ..+.+||+.+++++....
T Consensus 518 --Gl~~~~~~~~~~-~~~~~~~~~~l~~-----------~~i~~i~~d~~g~lWigT~--~Gl~~~d~~~~~~~~~~~~~ 581 (795)
T 4a2l_A 518 --GLSVFKQEGLDI-QKASILPVSNVTK-----------LFTNCIYEASNGIIWVGTR--EGFYCFNEKDKQIKRYNTTN 581 (795)
T ss_dssp --CEEEEEEETTEE-EECCCSCSCGGGG-----------SCEEEEEECTTSCEEEEES--SCEEEEETTTTEEEEECGGG
T ss_pred --ceEEEeCCCCeE-EEecCCCCCCCCC-----------CeeEEEEECCCCCEEEEeC--CCceeECCCCCcEEEeCCCC
Confidence 288999998888 44321 111111 00012222 3678887653 379999999999887642
Q ss_pred -CCCcccCCCcccEEEEEe-CCEEEEEcCCCCCCCCeeEEEeeecCCCCCCceecC---ccCCCce
Q 043540 368 -LPEQASSMNGWGLAFRAC-GDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKLLA---RQPMCGF 428 (437)
Q Consensus 368 -lp~~~~~~~~~~~a~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~---~~p~~~~ 428 (437)
+|... -.+++.- ++.|++.+.. -+..||+.+.+++... .+|...|
T Consensus 582 gl~~~~------i~~i~~d~~g~lWi~t~~----------Gl~~~~~~~~~~~~~~~~dGl~~~~f 631 (795)
T 4a2l_A 582 GLPNNV------VYGILEDSFGRLWLSTNR----------GISCFNPETEKFRNFTESDGLQSNQF 631 (795)
T ss_dssp TCSCSC------EEEEEECTTSCEEEEETT----------EEEEEETTTTEEEEECGGGTCSCSCE
T ss_pred CCchhh------eEEEEECCCCCEEEEcCC----------ceEEEcCCCCcEEEcCCcCCCccccC
Confidence 33221 1223222 4678887631 1455677777666542 3554444
No 66
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=96.97 E-value=0.064 Score=49.36 Aligned_cols=187 Identities=9% Similarity=0.045 Sum_probs=96.0
Q ss_pred cEEEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCc
Q 043540 140 HWVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPR 219 (437)
Q Consensus 140 ~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r 219 (437)
..++.......+..||..+.+......+........ .....-++..++.|+. ...+.+||..+++....-. ...
T Consensus 110 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~l~~~~~--dg~v~~~d~~~~~~~~~~~--~~~ 183 (337)
T 1gxr_A 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY--ALAISPDSKVCFSCCS--DGNIAVWDLHNQTLVRQFQ--GHT 183 (337)
T ss_dssp SEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEE--EEEECTTSSEEEEEET--TSCEEEEETTTTEEEEEEC--CCS
T ss_pred CEEEEEcCCCcEEEEECCCCCcceeeecccCCCceE--EEEECCCCCEEEEEeC--CCcEEEEeCCCCceeeeee--ccc
Confidence 344554455678888988776433222211111000 0001124555555543 3468899988775432211 111
Q ss_pred cceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEE-ECCEEEEEecccCCCCccCCeE
Q 043540 220 CLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVF-MDGKFYVIGGIGEGSSAMLTDV 296 (437)
Q Consensus 220 ~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~g~lyv~GG~~~~~~~~~~~v 296 (437)
.......+ ++..++.|+.+ ..+.+||..+.+-...-.. ........+ -+++++++|+.+ ..+
T Consensus 184 ~~i~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~-------~~i 248 (337)
T 1gxr_A 184 DGASCIDISNDGTKLWTGGLD------NTVRSWDLREGRQLQQHDF--TSQIFSLGYCPTGEWLAVGMES-------SNV 248 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEEC--SSCEEEEEECTTSSEEEEEETT-------SCE
T ss_pred CceEEEEECCCCCEEEEEecC------CcEEEEECCCCceEeeecC--CCceEEEEECCCCCEEEEEcCC-------CcE
Confidence 11222222 55666666643 5688999988753322111 111122222 267777777654 248
Q ss_pred EEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEE-ECCEEEEEeCCCCeEEEEeCCCCcEE
Q 043540 297 EMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV-VNNELYAADHEKEEVRKFDKGRKLWR 363 (437)
Q Consensus 297 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~~~v~~yd~~~~~W~ 363 (437)
..||+.+..-..+....... ..++. -++++++.++..+.+.+||..+++-.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~v----------------~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 249 EVLHVNKPDKYQLHLHESCV----------------LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp EEEETTSSCEEEECCCSSCE----------------EEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred EEEECCCCCeEEEcCCccce----------------eEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence 88999876543332111110 11222 25777777777888999999887654
No 67
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=96.96 E-value=0.19 Score=46.30 Aligned_cols=182 Identities=13% Similarity=0.100 Sum_probs=96.2
Q ss_pred cCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEE
Q 043540 147 KLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSAS 226 (437)
Q Consensus 147 ~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~ 226 (437)
....++.||+.... ......+.. .+. ..+.-++.+|+.........++.+|+.+++.+.+...+..+...+.+.
T Consensus 51 ~~~~I~~~d~~g~~-~~~~~~~~~--p~g---ia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~ 124 (306)
T 2p4o_A 51 EVGEIVSITPDGNQ-QIHATVEGK--VSG---LAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITP 124 (306)
T ss_dssp TTTEEEEECTTCCE-EEEEECSSE--EEE---EEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEE
T ss_pred CCCeEEEECCCCce-EEEEeCCCC--cee---EEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccc
Confidence 34567888887642 221111211 111 112235678886532222358889998888876655444444334443
Q ss_pred E-CCEEEEEeccCCCCCCCceEEEEECCCCc---EEecCC----CCc-CCcCeeEEEE-CCEEEEEecccCCCCccCCeE
Q 043540 227 L-GEIAILAGGCDPRGKLLKSAELYNSITGT---WMPISS----MHK-ARKMCSGVFM-DGKFYVIGGIGEGSSAMLTDV 296 (437)
Q Consensus 227 ~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~---W~~~~~----~~~-~r~~~~~~~~-~g~lyv~GG~~~~~~~~~~~v 296 (437)
. ++.+|+... ....++++|+.+++ |..-+. .+. .......+.. ++.||+.--. .+.+
T Consensus 125 ~~~~~~~v~d~------~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~-------~~~I 191 (306)
T 2p4o_A 125 LSDTQYLTADS------YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTE-------KMLL 191 (306)
T ss_dssp SSSSEEEEEET------TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETT-------TTEE
T ss_pred cCCCcEEEEEC------CCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCC-------CCEE
Confidence 3 456777632 12578999988652 321111 111 1112222233 4578987432 2468
Q ss_pred EEEECCC-CceE---ecCCCCCcccCCCCcccccccCCCCCEEEE-ECCEEEEEeCCCCeEEEEeCCCCcEEEc
Q 043540 297 EMYDLET-GKWT---QITDMFPARIGSDGVSVISAAGEAPPLLAV-VNNELYAADHEKEEVRKFDKGRKLWRTL 365 (437)
Q Consensus 297 ~~yd~~~-~~W~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~~~v~~yd~~~~~W~~v 365 (437)
.+||+.. ++.. .+.... .+..+++ -+|+||+.....+.|.+||+. .+...+
T Consensus 192 ~~~~~~~~g~~~~~~~~~~~~-----------------~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~ 247 (306)
T 2p4o_A 192 LRIPVDSTDKPGEPEIFVEQT-----------------NIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTII 247 (306)
T ss_dssp EEEEBCTTSCBCCCEEEEESC-----------------CCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEE
T ss_pred EEEEeCCCCCCCccEEEeccC-----------------CCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEE
Confidence 9999875 2221 111110 1123444 478999998777889999987 444444
No 68
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=96.94 E-value=0.2 Score=45.59 Aligned_cols=221 Identities=13% Similarity=0.024 Sum_probs=112.7
Q ss_pred EecCceEEEeccCCCCeeeCCCCCCccccccCCcee-EEeCCEEEEEcCccCCceEEEEECCCCceecCCCCCCC----c
Q 043540 145 SCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKES-LAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTP----R 219 (437)
Q Consensus 145 ~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~-~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~----r 219 (437)
......+..||+.++ ...+.. +.... ..+ ..-++.+|+... ....+++||+.+++.+.+...... +
T Consensus 46 ~~~~~~i~~~~~~~~-~~~~~~-~~~~~-----~~l~~~~dg~l~v~~~--~~~~i~~~d~~~g~~~~~~~~~~~~~~~~ 116 (296)
T 3e5z_A 46 DVRQNRTWAWSDDGQ-LSPEMH-PSHHQ-----NGHCLNKQGHLIACSH--GLRRLERQREPGGEWESIADSFEGKKLNS 116 (296)
T ss_dssp EGGGTEEEEEETTSC-EEEEES-SCSSE-----EEEEECTTCCEEEEET--TTTEEEEECSTTCCEEEEECEETTEECCC
T ss_pred eCCCCEEEEEECCCC-eEEEEC-CCCCc-----ceeeECCCCcEEEEec--CCCeEEEEcCCCCcEEEEeeccCCCCCCC
Confidence 334567888999887 544432 11110 011 223577877642 235689999988887765321111 1
Q ss_pred cceeeEEECCEEEEE----eccCC-------CCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE--CCEEEEEeccc
Q 043540 220 CLFGSASLGEIAILA----GGCDP-------RGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM--DGKFYVIGGIG 286 (437)
Q Consensus 220 ~~~~~~~~~~~iyv~----GG~~~-------~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~g~lyv~GG~~ 286 (437)
....+..-++.+|+. |..+. .......++.||+. ++.+.+..- ......+.+ +|++++.....
T Consensus 117 ~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~---~~~~~gi~~s~dg~~lv~~~~~ 192 (296)
T 3e5z_A 117 PNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRD---RVKPNGLAFLPSGNLLVSDTGD 192 (296)
T ss_dssp CCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECC---CSSEEEEEECTTSCEEEEETTT
T ss_pred CCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecC---CCCCccEEECCCCCEEEEeCCC
Confidence 111222236788887 43210 01112578999987 555544211 112223333 67776543322
Q ss_pred CCCCccCCeEEEEECC-CCce-EecCCCCCcccCCCCcccccccCCCCCEEEE-ECCEEEEEeCCCCeEEEEeCCCCcEE
Q 043540 287 EGSSAMLTDVEMYDLE-TGKW-TQITDMFPARIGSDGVSVISAAGEAPPLLAV-VNNELYAADHEKEEVRKFDKGRKLWR 363 (437)
Q Consensus 287 ~~~~~~~~~v~~yd~~-~~~W-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~~~v~~yd~~~~~W~ 363 (437)
..+++||+. +++. .....+ ..... .+..++. -+|+||+.. .+.|.+||+..+...
T Consensus 193 -------~~i~~~~~~~~g~~~~~~~~~-~~~~~------------~p~~i~~d~~G~l~v~~--~~~v~~~~~~g~~~~ 250 (296)
T 3e5z_A 193 -------NATHRYCLNARGETEYQGVHF-TVEPG------------KTDGLRVDAGGLIWASA--GDGVHVLTPDGDELG 250 (296)
T ss_dssp -------TEEEEEEECSSSCEEEEEEEE-CCSSS------------CCCSEEEBTTSCEEEEE--TTEEEEECTTSCEEE
T ss_pred -------CeEEEEEECCCCcCcCCCeEe-eCCCC------------CCCeEEECCCCCEEEEc--CCeEEEECCCCCEEE
Confidence 368889986 4555 211111 00011 1122333 478899887 678999999866555
Q ss_pred EccCCCCcccCCCcccEEEEEeC-CEEEEEcCCCCCCCCeeEEEeeecCCCCCC
Q 043540 364 TLGRLPEQASSMNGWGLAFRACG-DQLIVIGGPRDSGGGIVELNGWVPDEGPPH 416 (437)
Q Consensus 364 ~v~~lp~~~~~~~~~~~a~~~~~-~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~ 416 (437)
.+. .+.... ..++..-+ +.||+.... .+|++++.+..
T Consensus 251 ~~~-~~~~~~-----~~~f~~~d~~~L~v~t~~----------~l~~~~~~~~~ 288 (296)
T 3e5z_A 251 RVL-TPQTTS-----NLCFGGPEGRTLYMTVST----------EFWSIETNVRG 288 (296)
T ss_dssp EEE-CSSCCC-----EEEEESTTSCEEEEEETT----------EEEEEECSCCB
T ss_pred EEE-CCCCce-----eEEEECCCCCEEEEEcCC----------eEEEEEccccc
Confidence 443 333211 23332122 367776531 36777766654
No 69
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=96.91 E-value=0.027 Score=51.76 Aligned_cols=187 Identities=9% Similarity=-0.018 Sum_probs=95.0
Q ss_pred cCceEEEeccCCCCeeeCCCCCCccccccCCceeE-EeC-CEEEEEcCccCCceEEEEECCCCceecC-CCCCC--Ccc-
Q 043540 147 KLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESL-AVG-TELLVFGKEVHGNAIYRYNLLTNTWSTG-MTMNT--PRC- 220 (437)
Q Consensus 147 ~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~-~~~-~~lyv~GG~~~~~~v~~yd~~t~~W~~~-~~~~~--~r~- 220 (437)
....+..||+.++++..+.. +........-..++ .-+ +.||+... .+.+++||+. ++.+.+ ..... +..
T Consensus 44 ~~~~i~~~d~~~g~~~~~~~-~~~~~~~~~~~~i~~~~~~g~l~v~~~---~~~l~~~d~~-g~~~~~~~~~~~~~~~~~ 118 (314)
T 1pjx_A 44 PAGEILRIDLKTGKKTVICK-PEVNGYGGIPAGCQCDRDANQLFVADM---RLGLLVVQTD-GTFEEIAKKDSEGRRMQG 118 (314)
T ss_dssp ECCEEEEECTTTCCEEEEEC-CEETTEECCEEEEEECSSSSEEEEEET---TTEEEEEETT-SCEEECCSBCTTSCBCBC
T ss_pred CCCEEEEEeCCCCcEEEEEe-cccCCCCCCCceEEEecCCCcEEEEEC---CCCEEEEeCC-CCEEEEEeccCCCccccC
Confidence 34568889998888865532 10000000001112 224 78888753 2368999998 777655 32211 111
Q ss_pred ceeeEE-ECCEEEEEeccCC---------CCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE-----CC-EEEEEec
Q 043540 221 LFGSAS-LGEIAILAGGCDP---------RGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM-----DG-KFYVIGG 284 (437)
Q Consensus 221 ~~~~~~-~~~~iyv~GG~~~---------~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-----~g-~lyv~GG 284 (437)
-..++. -++.+|+....+. .......+++||+. ++...+..- .......++. ++ .||+...
T Consensus 119 ~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~--~~~~~~i~~~~~~d~dg~~l~v~~~ 195 (314)
T 1pjx_A 119 CNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA--FQFPNGIAVRHMNDGRPYQLIVAET 195 (314)
T ss_dssp CCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE--ESSEEEEEEEECTTSCEEEEEEEET
T ss_pred CcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC--CCCcceEEEecccCCCCCEEEEEEC
Confidence 122222 2578888754321 11123578899987 665543210 0111223333 34 4777643
Q ss_pred ccCCCCccCCeEEEEECC-CCceEec---CCCCCcc-cCCCCcccccccCCCCCEEEE-ECCEEEEEeCCCCeEEEEeCC
Q 043540 285 IGEGSSAMLTDVEMYDLE-TGKWTQI---TDMFPAR-IGSDGVSVISAAGEAPPLLAV-VNNELYAADHEKEEVRKFDKG 358 (437)
Q Consensus 285 ~~~~~~~~~~~v~~yd~~-~~~W~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~~~v~~yd~~ 358 (437)
.. ..+.+||+. +++.... ..++... .. +..++. -+|.||+.....+.|.+||+.
T Consensus 196 ~~-------~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~-------------p~~i~~d~~G~l~v~~~~~~~i~~~d~~ 255 (314)
T 1pjx_A 196 PT-------KKLWSYDIKGPAKIENKKVWGHIPGTHEGG-------------ADGMDFDEDNNLLVANWGSSHIEVFGPD 255 (314)
T ss_dssp TT-------TEEEEEEEEETTEEEEEEEEEECCCCSSCE-------------EEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred CC-------CeEEEEECCCCCccccceEEEECCCCCCCC-------------CCceEECCCCCEEEEEcCCCEEEEEcCC
Confidence 22 358888876 4443221 1122111 11 012333 368899987666789999998
Q ss_pred CCc
Q 043540 359 RKL 361 (437)
Q Consensus 359 ~~~ 361 (437)
+.+
T Consensus 256 ~g~ 258 (314)
T 1pjx_A 256 GGQ 258 (314)
T ss_dssp CBS
T ss_pred CCc
Confidence 544
No 70
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=96.90 E-value=0.15 Score=46.13 Aligned_cols=177 Identities=12% Similarity=0.090 Sum_probs=93.1
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCCC---CC-ccceeeEE--ECCEEEEEeccCCCCCCCceEEEEECCCCcE
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMN---TP-RCLFGSAS--LGEIAILAGGCDPRGKLLKSAELYNSITGTW 257 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~---~~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W 257 (437)
++.+|+... ....+.+||+..+....+.... .. ..-.+.++ -++.+|+.+... ...+.+||.....-
T Consensus 40 ~g~l~v~~~--~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~-----~~~i~~~d~~g~~~ 112 (286)
T 1q7f_A 40 QNDIIVADT--NNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP-----THQIQIYNQYGQFV 112 (286)
T ss_dssp TCCEEEEEG--GGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG-----GCEEEEECTTSCEE
T ss_pred CCCEEEEEC--CCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC-----CCEEEEECCCCcEE
Confidence 567888753 2346889998755443332211 11 11233444 267899886321 25688999654433
Q ss_pred EecCCCCcCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEE
Q 043540 258 MPISSMHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLL 335 (437)
Q Consensus 258 ~~~~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (437)
..+.... ......+.+ +|++|+..... ..+..||+.......+... ..... +..+
T Consensus 113 ~~~~~~~--~~~~~~i~~~~~g~l~v~~~~~-------~~i~~~~~~g~~~~~~~~~-~~~~~-------------p~~i 169 (286)
T 1q7f_A 113 RKFGATI--LQHPRGVTVDNKGRIIVVECKV-------MRVIIFDQNGNVLHKFGCS-KHLEF-------------PNGV 169 (286)
T ss_dssp EEECTTT--CSCEEEEEECTTSCEEEEETTT-------TEEEEECTTSCEEEEEECT-TTCSS-------------EEEE
T ss_pred EEecCcc--CCCceEEEEeCCCCEEEEECCC-------CEEEEEcCCCCEEEEeCCC-CccCC-------------cEEE
Confidence 3332211 112223333 68899875432 3588999876544444211 01111 0223
Q ss_pred EE-ECCEEEEEeCCCCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcC
Q 043540 336 AV-VNNELYAADHEKEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGG 394 (437)
Q Consensus 336 ~~-~~~~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG 394 (437)
++ -+|+||+.+.....|.+||+..+....+..-..... ..+.++ .-+++|||...
T Consensus 170 ~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~---p~~i~~-d~~G~l~v~~~ 225 (286)
T 1q7f_A 170 VVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNY---PIGVGI-NSNGEILIADN 225 (286)
T ss_dssp EECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCS---EEEEEE-CTTCCEEEEEC
T ss_pred EECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCC---CcEEEE-CCCCCEEEEeC
Confidence 33 258999998777899999997765555532110000 012222 23568888764
No 71
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=96.89 E-value=0.043 Score=49.19 Aligned_cols=181 Identities=13% Similarity=0.004 Sum_probs=97.2
Q ss_pred EEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeE-EeCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCcc
Q 043540 142 VYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESL-AVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRC 220 (437)
Q Consensus 142 l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~-~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~ 220 (437)
+|+......+..||+.......+....... . ..++ .-++.+|+.... ...+++++..+.......... ...
T Consensus 80 l~v~~~~~~i~~~d~~~~~~~~~~~~~~~~-p----~~i~~~~~g~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~-~~~ 151 (270)
T 1rwi_B 80 VYVTDFNNRVVTLAAGSNNQTVLPFDGLNY-P----EGLAVDTQGAVYVADRG--NNRVVKLAAGSKTQTVLPFTG-LND 151 (270)
T ss_dssp EEEEETTTEEEEECTTCSCCEECCCCSCSS-E----EEEEECTTCCEEEEEGG--GTEEEEECTTCCSCEECCCCS-CCS
T ss_pred EEEEcCCCEEEEEeCCCceEeeeecCCcCC-C----cceEECCCCCEEEEECC--CCEEEEEECCCceeEeecccc-CCC
Confidence 455444457888998877655443211111 0 1112 225678886422 346888887665544322111 011
Q ss_pred ceeeEEE-CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE--CCEEEEEecccCCCCccCCeEE
Q 043540 221 LFGSASL-GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVE 297 (437)
Q Consensus 221 ~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~ 297 (437)
-.+++.- ++++|+.... ...+.+||+.+..-....... ......+.+ +|.||+..... ..+.
T Consensus 152 p~~i~~~~~g~l~v~~~~------~~~i~~~~~~~~~~~~~~~~~--~~~p~~i~~d~~g~l~v~~~~~-------~~v~ 216 (270)
T 1rwi_B 152 PDGVAVDNSGNVYVTDTD------NNRVVKLEAESNNQVVLPFTD--ITAPWGIAVDEAGTVYVTEHNT-------NQVV 216 (270)
T ss_dssp CCCEEECTTCCEEEEEGG------GTEEEEECTTTCCEEECCCSS--CCSEEEEEECTTCCEEEEETTT-------SCEE
T ss_pred ceeEEEeCCCCEEEEECC------CCEEEEEecCCCceEeecccC--CCCceEEEECCCCCEEEEECCC-------CcEE
Confidence 1233333 5788887542 257899999877654332111 122333444 56899875432 3488
Q ss_pred EEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEE-ECCEEEEEeCCCCeEEEEeCCCC
Q 043540 298 MYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV-VNNELYAADHEKEEVRKFDKGRK 360 (437)
Q Consensus 298 ~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~~~v~~yd~~~~ 360 (437)
.||+....-..... ..... +..+++ -+|+||+.+...+.|.+|+....
T Consensus 217 ~~~~~~~~~~~~~~--~~~~~-------------p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 217 KLLAGSTTSTVLPF--TGLNT-------------PLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EECTTCSCCEECCC--CSCSC-------------EEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred EEcCCCCcceeecc--CCCCC-------------ceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 89987754333211 11111 122333 25789999877888999987653
No 72
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.023 Score=60.01 Aligned_cols=243 Identities=8% Similarity=0.097 Sum_probs=121.7
Q ss_pred cEEEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEe--C--CEEEEEcCccCCceEEEEECCCCceecCCCC
Q 043540 140 HWVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAV--G--TELLVFGKEVHGNAIYRYNLLTNTWSTGMTM 215 (437)
Q Consensus 140 ~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~--~--~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~ 215 (437)
.+++.......+..||...+++..+..+....... ..+.. . +..++.|+. ...+.+||..+++|..+..+
T Consensus 22 ~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V----~~l~~s~~~~~~~l~s~s~--Dg~I~vwd~~~~~~~~~~~~ 95 (753)
T 3jro_A 22 KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPV----WRVDWAHPKFGTILASCSY--DGKVLIWKEENGRWSQIAVH 95 (753)
T ss_dssp CCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCE----EEEEECCTTSCSEEEEEET--TSCEEEEEEETTEEEEEEEE
T ss_pred CeEEEEECCCcEEEEecCCCCCccceeccCCcCce----EEEEecCCCCCCEEEEEeC--CCeEEEEECCCCcccccccc
Confidence 34555555567788887766665543332211110 11222 2 555666643 34688899989887665443
Q ss_pred CCCccceeeEEE--C--CEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE---------------C
Q 043540 216 NTPRCLFGSASL--G--EIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM---------------D 276 (437)
Q Consensus 216 ~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~---------------~ 276 (437)
........++.+ + +.+++.|+.+ ..+.+||..++.-.....+.........+.. +
T Consensus 96 ~~h~~~V~~v~~sp~~~~~~l~sgs~d------g~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d 169 (753)
T 3jro_A 96 AVHSASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKE 169 (753)
T ss_dssp CCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGG
T ss_pred cCCCCCeEEEEECCCCCCCEEEEEeCC------CcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCC
Confidence 322222333333 2 5677777754 5688899877632111111111112222222 3
Q ss_pred CEEEEEecccCCCCccCCeEEEEECCCC--ceEecCCCCCcccCCCCcccccccCCCCCEEEEE-C---CEEEEEeCCCC
Q 043540 277 GKFYVIGGIGEGSSAMLTDVEMYDLETG--KWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV-N---NELYAADHEKE 350 (437)
Q Consensus 277 g~lyv~GG~~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~ly~~gg~~~ 350 (437)
+.+++.|+.+ ..+..||+.++ .+..+..+...... + ..++.. + +.+++.|+..+
T Consensus 170 ~~~l~sgs~d-------g~I~iwd~~~~~~~~~~~~~~~~h~~~----V---------~~l~~sp~~~~~~~l~s~s~Dg 229 (753)
T 3jro_A 170 SRKFVTGGAD-------NLVKIWKYNSDAQTYVLESTLEGHSDW----V---------RDVAWSPTVLLRSYLASVSQDR 229 (753)
T ss_dssp GCCEEEEETT-------SCEEEEEEETTTTEEEEEEEECCCSSC----E---------EEEEECCCCSSSEEEEEEESSS
T ss_pred CCEEEEEECC-------CeEEEEeccCCcccceeeeeecCCCCc----E---------EEEEeccCCCCCCEEEEEecCC
Confidence 6677777654 24778887654 33333222211111 0 112222 3 67888888788
Q ss_pred eEEEEeCCCCc--EEE-ccCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCceecCccC
Q 043540 351 EVRKFDKGRKL--WRT-LGRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKLLARQP 424 (437)
Q Consensus 351 ~v~~yd~~~~~--W~~-v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p 424 (437)
.|.+||..+.+ +.. +......... -...++ .-+++.++.||.+. .+.+|.++. ...|.......
T Consensus 230 ~I~iwd~~~~~~~~~~~~~~~~~~~~~--v~~l~~-spdg~~l~s~s~Dg------~I~vwd~~~-~~~~~~~~~~~ 296 (753)
T 3jro_A 230 TCIIWTQDNEQGPWKKTLLKEEKFPDV--LWRASW-SLSGNVLALSGGDN------KVTLWKENL-EGKWEPAGEVH 296 (753)
T ss_dssp CEEEEEESSSSSCCBCCBSSSSCCSSC--CCCEEE-CTTTCCEEEECSSS------CEECCBCCS-SSCCBCCCCBC
T ss_pred EEEEecCCCCCCcceeEEeccCCCCCc--eEEEEE-cCCCCEEEEEcCCC------EEEEEecCC-CCCcccccccc
Confidence 89999987753 211 1111111110 012332 23567777776541 366776653 35777665443
No 73
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.87 E-value=0.051 Score=57.56 Aligned_cols=178 Identities=6% Similarity=0.042 Sum_probs=102.5
Q ss_pred ceEEEeccCCCCeeeCCCCCCccccccCCceeEE-eCCEEEEEcCccCCceEEEEECCCCceecCCCCC---CCccceee
Q 043540 149 KEWEAFDPIHHRWMHLPPMNASDCFMCADKESLA-VGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMN---TPRCLFGS 224 (437)
Q Consensus 149 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~---~~r~~~~~ 224 (437)
.-+..||+.++++..+.....+... . ..++. -++.|++-. ..-+++||+.+++|+...... ........
T Consensus 427 ~Gl~~~~~~~~~~~~~~~~~~~~~~--v-~~i~~d~~g~lwigt----~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 499 (781)
T 3v9f_A 427 GNISYYNTRLKKFQIIELEKNELLD--V-RVFYEDKNKKIWIGT----HAGVFVIDLASKKVIHHYDTSNSQLLENFVRS 499 (781)
T ss_dssp EEEEEECSSSCEEEECCSTTTCCCC--E-EEEEECTTSEEEEEE----TTEEEEEESSSSSCCEEECTTTSSCSCSCEEE
T ss_pred CCEEEEcCCCCcEEEeccCCCCCCe--E-EEEEECCCCCEEEEE----CCceEEEeCCCCeEEecccCcccccccceeEE
Confidence 4577899998888876532111100 0 11122 256777643 246899999999887654322 11111112
Q ss_pred EEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCC-cCCcCeeEEEE--CCEEEEEecccCCCCccCCeE-EE
Q 043540 225 ASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMH-KARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDV-EM 298 (437)
Q Consensus 225 ~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~-~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v-~~ 298 (437)
... ++.|++... -..+.+||+.+++++...... .+-.....+.. +|.|++.... -+ ..
T Consensus 500 i~~d~~g~lWigt~-------~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~---------Glv~~ 563 (781)
T 3v9f_A 500 IAQDSEGRFWIGTF-------GGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATGE---------GLVCF 563 (781)
T ss_dssp EEECTTCCEEEEES-------SSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEETT---------EEEEE
T ss_pred EEEcCCCCEEEEEc-------CCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEECC---------CceEE
Confidence 222 467776531 134788999999988765311 11112223333 5788875432 25 88
Q ss_pred EECCCCceEecCC---CCCcccCCCCcccccccCCCCCEEEE-ECCEEEEEeCCCCeEEEEeCCCCcEEEcc
Q 043540 299 YDLETGKWTQITD---MFPARIGSDGVSVISAAGEAPPLLAV-VNNELYAADHEKEEVRKFDKGRKLWRTLG 366 (437)
Q Consensus 299 yd~~~~~W~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~~~v~~yd~~~~~W~~v~ 366 (437)
||+.+++++.+.. ++.... .+++. -+|.|++.+ .+.+.+||++++++....
T Consensus 564 ~d~~~~~~~~~~~~~gl~~~~i---------------~~i~~d~~g~lW~~t--~~Gl~~~~~~~~~~~~~~ 618 (781)
T 3v9f_A 564 PSARNFDYQVFQRKEGLPNTHI---------------RAISEDKNGNIWAST--NTGISCYITSKKCFYTYD 618 (781)
T ss_dssp SCTTTCCCEEECGGGTCSCCCC---------------CEEEECSSSCEEEEC--SSCEEEEETTTTEEEEEC
T ss_pred ECCCCCcEEEccccCCCCCceE---------------EEEEECCCCCEEEEc--CCceEEEECCCCceEEec
Confidence 9999988876642 332221 23333 368888875 456999999999988764
No 74
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=96.86 E-value=0.033 Score=51.32 Aligned_cols=212 Identities=12% Similarity=0.071 Sum_probs=108.8
Q ss_pred ecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCceecCCCCCC--Ccccee
Q 043540 146 CKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNT--PRCLFG 223 (437)
Q Consensus 146 ~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~--~r~~~~ 223 (437)
.....++.||+.+++-..+.. +.... .....-++.+|+.. .+.+++||+.+++++.+..... +.....
T Consensus 32 ~~~~~i~~~d~~~~~~~~~~~-~~~~~-----~i~~~~dG~l~v~~----~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~ 101 (297)
T 3g4e_A 32 IPAKKVCRWDSFTKQVQRVTM-DAPVS-----SVALRQSGGYVATI----GTKFCALNWKEQSAVVLATVDNDKKNNRFN 101 (297)
T ss_dssp TTTTEEEEEETTTCCEEEEEC-SSCEE-----EEEEBTTSSEEEEE----TTEEEEEETTTTEEEEEEECCTTCSSEEEE
T ss_pred CCCCEEEEEECCCCcEEEEeC-CCceE-----EEEECCCCCEEEEE----CCeEEEEECCCCcEEEEEecCCCCCCCCCC
Confidence 345678899998876543321 11110 01122355666543 3579999999998877643321 212222
Q ss_pred eEEE--CCEEEEEeccCCC-----CCCCceEEEEECCCCcEEecC-CCCcCCcCeeEEEE-CC-EEEEEecccCCCCccC
Q 043540 224 SASL--GEIAILAGGCDPR-----GKLLKSAELYNSITGTWMPIS-SMHKARKMCSGVFM-DG-KFYVIGGIGEGSSAML 293 (437)
Q Consensus 224 ~~~~--~~~iyv~GG~~~~-----~~~~~~~~~yd~~t~~W~~~~-~~~~~r~~~~~~~~-~g-~lyv~GG~~~~~~~~~ 293 (437)
...+ ++.+|+..-.... ......++++|+. ++...+. .+.. ..+.++. ++ .||+.....
T Consensus 102 di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~---pngi~~spdg~~lyv~~~~~------- 170 (297)
T 3g4e_A 102 DGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDI---SNGLDWSLDHKIFYYIDSLS------- 170 (297)
T ss_dssp EEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESB---EEEEEECTTSCEEEEEEGGG-------
T ss_pred CEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeecccc---ccceEEcCCCCEEEEecCCC-------
Confidence 2222 5777775321110 0123578888875 3333321 1111 1122222 45 588875433
Q ss_pred CeEEEEEC--CCCceEe---cCCCCCcccCCCCcccccccCCCCCEEEE-ECCEEEEEeCCCCeEEEEeCCCCcEEEccC
Q 043540 294 TDVEMYDL--ETGKWTQ---ITDMFPARIGSDGVSVISAAGEAPPLLAV-VNNELYAADHEKEEVRKFDKGRKLWRTLGR 367 (437)
Q Consensus 294 ~~v~~yd~--~~~~W~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~~~v~~yd~~~~~W~~v~~ 367 (437)
..+++||. .++.... +..++..... +..+++ -+|.||+.......|.+||+++.+....-.
T Consensus 171 ~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~-------------p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~ 237 (297)
T 3g4e_A 171 YSVDAFDYDLQTGQISNRRSVYKLEKEEQI-------------PDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK 237 (297)
T ss_dssp TEEEEEEECTTTCCEEEEEEEEECCGGGCE-------------EEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE
T ss_pred CcEEEEeccCCCCcccCcEEEEECCCCCCC-------------CCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE
Confidence 35788875 5555431 1111111011 123344 368999987667789999999877655445
Q ss_pred CCCcccCCCcccEEEE-EeCCEEEEEcCC
Q 043540 368 LPEQASSMNGWGLAFR-ACGDQLIVIGGP 395 (437)
Q Consensus 368 lp~~~~~~~~~~~a~~-~~~~~l~v~GG~ 395 (437)
+|.... ..+++. .-++.|||....
T Consensus 238 ~p~~~~----t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 238 LPVDKT----TSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp CSSSBE----EEEEEESGGGCEEEEEEBC
T ss_pred CCCCCc----eEEEEeCCCCCEEEEEcCC
Confidence 553321 123322 122589998643
No 75
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=96.82 E-value=0.11 Score=48.40 Aligned_cols=184 Identities=10% Similarity=0.148 Sum_probs=93.8
Q ss_pred EEEEEecCceEEEeccCCCCeee-CCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCc
Q 043540 141 WVYFSCKLKEWEAFDPIHHRWMH-LPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPR 219 (437)
Q Consensus 141 ~l~~~~~~~~~~~yDp~~~~W~~-l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r 219 (437)
.+........+..+|..+.+-.. +..-+.... .....-++..++.|+. ...+.+||..+++-... +....
T Consensus 94 ~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~-----~~~~spdg~~l~~g~~--dg~v~i~~~~~~~~~~~--~~~~~ 164 (321)
T 3ow8_A 94 IAASSSLDAHIRLWDLENGKQIKSIDAGPVDAW-----TLAFSPDSQYLATGTH--VGKVNIFGVESGKKEYS--LDTRG 164 (321)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCTTCCC-----CEEECTTSSEEEEECT--TSEEEEEETTTCSEEEE--EECSS
T ss_pred EEEEEeCCCcEEEEECCCCCEEEEEeCCCccEE-----EEEECCCCCEEEEEcC--CCcEEEEEcCCCceeEE--ecCCC
Confidence 34444445667788887765322 111111100 0112234556666643 34678888876643221 11111
Q ss_pred cceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE--CCEEEEEecccCCCCccCCe
Q 043540 220 CLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTD 295 (437)
Q Consensus 220 ~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~ 295 (437)
....++.+ +++.++.|+.+ ..+.+||..+++-.. .+.........+.+ ++++++.|+.+ ..
T Consensus 165 ~~v~~~~~spdg~~lasg~~d------g~i~iwd~~~~~~~~--~~~~h~~~v~~l~~spd~~~l~s~s~d-------g~ 229 (321)
T 3ow8_A 165 KFILSIAYSPDGKYLASGAID------GIINIFDIATGKLLH--TLEGHAMPIRSLTFSPDSQLLVTASDD-------GY 229 (321)
T ss_dssp SCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEE--EECCCSSCCCEEEECTTSCEEEEECTT-------SC
T ss_pred ceEEEEEECCCCCEEEEEcCC------CeEEEEECCCCcEEE--EEcccCCceeEEEEcCCCCEEEEEcCC-------Ce
Confidence 11122222 56677777654 457899998875322 12111111222222 67888887765 24
Q ss_pred EEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEE-ECCEEEEEeCCCCeEEEEeCCCCcEE
Q 043540 296 VEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV-VNNELYAADHEKEEVRKFDKGRKLWR 363 (437)
Q Consensus 296 v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~~~v~~yd~~~~~W~ 363 (437)
+..||+.+...... + .+|...+ ..++. -+++.++.++..+.|.+||..+.+-.
T Consensus 230 i~iwd~~~~~~~~~--~----~~h~~~v---------~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~ 283 (321)
T 3ow8_A 230 IKIYDVQHANLAGT--L----SGHASWV---------LNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCV 283 (321)
T ss_dssp EEEEETTTCCEEEE--E----CCCSSCE---------EEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred EEEEECCCcceeEE--E----cCCCCce---------EEEEECCCCCEEEEEeCCCcEEEEeCCCCEEE
Confidence 88899887654322 1 1110000 11222 25777777777788999999876543
No 76
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=96.81 E-value=0.13 Score=48.11 Aligned_cols=196 Identities=13% Similarity=0.093 Sum_probs=93.4
Q ss_pred EEEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCc-eecCCCCCCC-
Q 043540 141 WVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNT-WSTGMTMNTP- 218 (437)
Q Consensus 141 ~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~-W~~~~~~~~~- 218 (437)
+++.......+..||..++++.....+........ .....-++..++.|+.. ..+.+||..++. |........+
T Consensus 66 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~~~~d--~~v~i~d~~~~~~~~~~~~~~~~~ 141 (372)
T 1k8k_C 66 RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR--CVRWAPNEKKFAVGSGS--RVISICYFEQENDWWVCKHIKKPI 141 (372)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEE--EEEECTTSSEEEEEETT--SSEEEEEEETTTTEEEEEEECTTC
T ss_pred EEEEEcCCCeEEEEECCCCeeeeeEEeecCCCcee--EEEECCCCCEEEEEeCC--CEEEEEEecCCCcceeeeeeeccc
Confidence 44444445667788887776644322111111000 00112245555555433 346666665543 3222111111
Q ss_pred ccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCc---------E-------EecCCCCcCCcCeeEEEE--CCE
Q 043540 219 RCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGT---------W-------MPISSMHKARKMCSGVFM--DGK 278 (437)
Q Consensus 219 r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~---------W-------~~~~~~~~~r~~~~~~~~--~g~ 278 (437)
........+ ++..++.|+.+ ..+.+||..... | +.+..+.........+.+ +++
T Consensus 142 ~~~i~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 215 (372)
T 1k8k_C 142 RSTVLSLDWHPNSVLLAAGSCD------FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS 215 (372)
T ss_dssp CSCEEEEEECTTSSEEEEEETT------SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS
T ss_pred CCCeeEEEEcCCCCEEEEEcCC------CCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCC
Confidence 111222222 56677777654 457788854211 1 111111111122223333 666
Q ss_pred EEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCC
Q 043540 279 FYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKG 358 (437)
Q Consensus 279 lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~ 358 (437)
+++.|+.+ ..+..||+.+.+-...-........ .....-++++++.| ..+.+.+||..
T Consensus 216 ~l~~~~~d-------~~i~i~d~~~~~~~~~~~~~~~~v~--------------~~~~~~~~~~l~~~-~d~~i~i~~~~ 273 (372)
T 1k8k_C 216 RVAWVSHD-------STVCLADADKKMAVATLASETLPLL--------------AVTFITESSLVAAG-HDCFPVLFTYD 273 (372)
T ss_dssp EEEEEETT-------TEEEEEEGGGTTEEEEEECSSCCEE--------------EEEEEETTEEEEEE-TTSSCEEEEEE
T ss_pred EEEEEeCC-------CEEEEEECCCCceeEEEccCCCCeE--------------EEEEecCCCEEEEE-eCCeEEEEEcc
Confidence 66666654 3588899877653221111100000 11223477877777 66788999988
Q ss_pred C--CcEEEccCC
Q 043540 359 R--KLWRTLGRL 368 (437)
Q Consensus 359 ~--~~W~~v~~l 368 (437)
+ ++|..+..+
T Consensus 274 ~~~~~~~~~~~~ 285 (372)
T 1k8k_C 274 SAAGKLSFGGRL 285 (372)
T ss_dssp TTTTEEEECCCC
T ss_pred CcCceEEEeecc
Confidence 8 889887544
No 77
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.80 E-value=0.34 Score=46.48 Aligned_cols=207 Identities=12% Similarity=0.056 Sum_probs=115.9
Q ss_pred ccEEEEEecCceEEEeccCCCCeeeCCC-CCCccccccCCceeEE--eCCEEEEEcCccCCceEEEEECCCCceecCC--
Q 043540 139 EHWVYFSCKLKEWEAFDPIHHRWMHLPP-MNASDCFMCADKESLA--VGTELLVFGKEVHGNAIYRYNLLTNTWSTGM-- 213 (437)
Q Consensus 139 ~~~l~~~~~~~~~~~yDp~~~~W~~l~~-~p~~~~~~~~~~~~~~--~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~-- 213 (437)
++++++.. ...+..+|+.......+.. +..+. .++. .++.||+.- .....++++++.....+.+.
T Consensus 87 ~~~l~~~~-~~~I~~i~~~~~~~~~~~~~~~~~~-------gl~~d~~~~~ly~~D--~~~~~I~r~~~~g~~~~~~~~~ 156 (386)
T 3v65_B 87 EPVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAI-------ALDFHHRRELVFWSD--VTLDRILRANLNGSNVEEVVST 156 (386)
T ss_dssp CCEEEEEC-BSCEEEECTTSCCCEEEECSCSCEE-------EEEEETTTTEEEEEE--TTTTEEEEEETTSCCEEEEECS
T ss_pred cceeEeec-CccceeeccCCCcEEEEecCCCccE-------EEEEecCCCeEEEEe--CCCCcEEEEecCCCCcEEEEeC
Confidence 56666653 4678888988776654432 11111 1121 357888874 23467999999877655442
Q ss_pred CCCCCccceeeEE--ECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCee-EEEE--CCEEEEEecccCC
Q 043540 214 TMNTPRCLFGSAS--LGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCS-GVFM--DGKFYVIGGIGEG 288 (437)
Q Consensus 214 ~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~-~~~~--~g~lyv~GG~~~~ 288 (437)
.+..| .+.++ .++.||+.-.. ...++++++....-+.+..- ...... .++- ++.||+.--..
T Consensus 157 ~~~~p---~glavd~~~g~lY~~d~~------~~~I~~~~~dg~~~~~l~~~--~l~~P~giavdp~~g~ly~td~~~-- 223 (386)
T 3v65_B 157 GLESP---GGLAVDWVHDKLYWTDSG------TSRIEVANLDGAHRKVLLWQ--SLEKPRAIALHPMEGTIYWTDWGN-- 223 (386)
T ss_dssp SCSCC---CCEEEETTTTEEEEEETT------TTEEEECBTTSCSCEEEECS--SCSCEEEEEEETTTTEEEEEECSS--
T ss_pred CCCCc---cEEEEEeCCCeEEEEcCC------CCeEEEEeCCCCceEEeecC--CCCCCcEEEEEcCCCeEEEeccCC--
Confidence 22222 23344 37899998542 25788888876543333211 111223 3333 68899874211
Q ss_pred CCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEE--ECCEEEEEeCCCCeEEEEeCCCCcEEEcc
Q 043540 289 SSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV--VNNELYAADHEKEEVRKFDKGRKLWRTLG 366 (437)
Q Consensus 289 ~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ly~~gg~~~~v~~yd~~~~~W~~v~ 366 (437)
...++++|+....-+.+..- ... .+.++++ .+++||+.+.....|+++|.....=..+.
T Consensus 224 ----~~~I~r~~~dG~~~~~~~~~--~~~-------------~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~ 284 (386)
T 3v65_B 224 ----TPRIEASSMDGSGRRIIADT--HLF-------------WPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVI 284 (386)
T ss_dssp ----SCEEEEEETTSCSCEEEECS--SCS-------------CEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEE
T ss_pred ----CCEEEEEeCCCCCcEEEEEC--CCC-------------CeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEE
Confidence 35689999876433333210 010 1134555 37899999988889999998754333332
Q ss_pred CCCCcccCCCcccEEEEEeCCEEEEEc
Q 043540 367 RLPEQASSMNGWGLAFRACGDQLIVIG 393 (437)
Q Consensus 367 ~lp~~~~~~~~~~~a~~~~~~~l~v~G 393 (437)
..... +..|++ +.++.||+.-
T Consensus 285 ~~~~~----~P~gia--v~~~~ly~td 305 (386)
T 3v65_B 285 SQGLP----HPFAIT--VFEDSLYWTD 305 (386)
T ss_dssp CSSCS----SEEEEE--EETTEEEEEE
T ss_pred ECCCC----CceEEE--EECCEEEEee
Confidence 11111 112444 4788999985
No 78
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=96.80 E-value=0.059 Score=49.88 Aligned_cols=180 Identities=6% Similarity=0.014 Sum_probs=90.7
Q ss_pred cCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCC-EEEEEcCccCCceEEEEECCCCce-e-cCCCCCCCcccee
Q 043540 147 KLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGT-ELLVFGKEVHGNAIYRYNLLTNTW-S-TGMTMNTPRCLFG 223 (437)
Q Consensus 147 ~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~-~lyv~GG~~~~~~v~~yd~~t~~W-~-~~~~~~~~r~~~~ 223 (437)
....+..||+.+++....-..+.... . ..+.-++ .+|+.+.. ...++++|+.+++. . .+..-..+. ++
T Consensus 18 ~~~~v~~~d~~~~~~~~~~~~~~~~~--~---~~~s~dg~~l~~~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~--~~ 88 (331)
T 3u4y_A 18 HLRRISFFSTDTLEILNQITLGYDFV--D---TAITSDCSNVVVTSDF--CQTLVQIETQLEPPKVVAIQEGQSSM--AD 88 (331)
T ss_dssp GGTEEEEEETTTCCEEEEEECCCCEE--E---EEECSSSCEEEEEEST--TCEEEEEECSSSSCEEEEEEECSSCC--CC
T ss_pred CCCeEEEEeCcccceeeeEEccCCcc--e---EEEcCCCCEEEEEeCC--CCeEEEEECCCCceeEEecccCCCCc--cc
Confidence 34678899999888754332221111 1 1122234 57776532 34799999988874 2 222211121 21
Q ss_pred eEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE-CCE-EEEEecccCCCCccCCe-EEE
Q 043540 224 SASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM-DGK-FYVIGGIGEGSSAMLTD-VEM 298 (437)
Q Consensus 224 ~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~g~-lyv~GG~~~~~~~~~~~-v~~ 298 (437)
.+.. +..+| ++... . ....+.+||..+++-... ++.....+.+++. +|+ +|+.+... .. +..
T Consensus 89 ~~~s~dg~~l~-~~~~~-~--~~~~i~v~d~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~~-------~~~i~~ 155 (331)
T 3u4y_A 89 VDITPDDQFAV-TVTGL-N--HPFNMQSYSFLKNKFIST--IPIPYDAVGIAISPNGNGLILIDRSS-------ANTVRR 155 (331)
T ss_dssp EEECTTSSEEE-ECCCS-S--SSCEEEEEETTTTEEEEE--EECCTTEEEEEECTTSSCEEEEEETT-------TTEEEE
T ss_pred eEECCCCCEEE-EecCC-C--CcccEEEEECCCCCeEEE--EECCCCccceEECCCCCEEEEEecCC-------CceEEE
Confidence 2222 34566 33211 1 113899999998875433 2222222333333 554 77765432 23 666
Q ss_pred EECCCCc-eEec--CCCCCcccCCCCcccccccCCCCCEEEEE-CC-EEEEEeCCCCeEEEEeCCCCcE
Q 043540 299 YDLETGK-WTQI--TDMFPARIGSDGVSVISAAGEAPPLLAVV-NN-ELYAADHEKEEVRKFDKGRKLW 362 (437)
Q Consensus 299 yd~~~~~-W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~ly~~gg~~~~v~~yd~~~~~W 362 (437)
||+..+. .... ..++.. .. +..++.. +| .||+.+...+.|.+||..+.+.
T Consensus 156 ~~~~~~g~~~~~~~~~~~~~-~~-------------~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 156 FKIDADGVLFDTGQEFISGG-TR-------------PFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp EEECTTCCEEEEEEEEECSS-SS-------------EEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred EEECCCCcEeecCCccccCC-CC-------------ccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 7665422 1111 000110 01 1122322 45 4888877778899999988765
No 79
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=96.78 E-value=0.22 Score=48.59 Aligned_cols=214 Identities=8% Similarity=-0.027 Sum_probs=101.8
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceec--CCCCCCCccce-ee-EEEC---CEEEEEeccCCCCCCCceEEEEECCCCc
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWST--GMTMNTPRCLF-GS-ASLG---EIAILAGGCDPRGKLLKSAELYNSITGT 256 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~--~~~~~~~r~~~-~~-~~~~---~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 256 (437)
++..++.|+. ...++.++..+..... ...+....... ++ ..-+ +..++.|+.+ ..+.+||..+++
T Consensus 160 ~~~~l~~~~~--~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d------~~i~vwd~~~~~ 231 (450)
T 2vdu_B 160 DDTTVIIADK--FGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRD------EHIKISHYPQCF 231 (450)
T ss_dssp TSSEEEEEET--TSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETT------SCEEEEEESCTT
T ss_pred CCCEEEEEeC--CCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCC------CcEEEEECCCCc
Confidence 4555555532 3468889887655432 11111111111 22 2235 6777777754 467888887765
Q ss_pred EEecCCCCcCCcCeeEEEE-CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCC---cccC--C-CC-cccccc-
Q 043540 257 WMPISSMHKARKMCSGVFM-DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFP---ARIG--S-DG-VSVISA- 327 (437)
Q Consensus 257 W~~~~~~~~~r~~~~~~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~---~~~~--~-~~-~~~~~~- 327 (437)
....- +.........+.+ ++++++.|+.+ ..+..||+.+++-...-.... .... + .. .+....
T Consensus 232 ~~~~~-~~~h~~~v~~~~~sd~~~l~s~~~d-------~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (450)
T 2vdu_B 232 IVDKW-LFGHKHFVSSICCGKDYLLLSAGGD-------DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENN 303 (450)
T ss_dssp CEEEE-CCCCSSCEEEEEECSTTEEEEEESS-------SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC---------
T ss_pred eeeee-ecCCCCceEEEEECCCCEEEEEeCC-------CeEEEEECCCCcEeeeecchhhhhhhhhhccccccccccccc
Confidence 32210 1111111122222 78888887754 368899998876432211100 0000 0 00 000000
Q ss_pred -c-CCCCCEEEEE-CCEEEEEeC-CCCeEEEEeC--CC-CcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCCC-CCC
Q 043540 328 -A-GEAPPLLAVV-NNELYAADH-EKEEVRKFDK--GR-KLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPR-DSG 399 (437)
Q Consensus 328 -~-~~~~~~~~~~-~~~ly~~gg-~~~~v~~yd~--~~-~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~-~~~ 399 (437)
. ......++.. +++.+++++ ..+.|.+||. .+ .++..+..++.... -.+++...+.+++..+.. ..+
T Consensus 304 ~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~-----v~~~~~~~~~~~v~~~~~~~~~ 378 (450)
T 2vdu_B 304 DIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYN-----VISLSAHNDEFQVTLDNKESSG 378 (450)
T ss_dssp -CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSC-----EEEEEEETTEEEEEECCTTCCS
T ss_pred ccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCc-----eEEEEecCCcEEEEEecccCCC
Confidence 0 0000112222 344444444 6778999998 33 45665554433211 233445557777765543 222
Q ss_pred CCeeEEEeeecCCCCCCce
Q 043540 400 GGIVELNGWVPDEGPPHWK 418 (437)
Q Consensus 400 ~~~~~~~~~~~d~~~~~W~ 418 (437)
.....+.+|.++..+..|+
T Consensus 379 ~~~~~i~v~~~~~~~~~~~ 397 (450)
T 2vdu_B 379 VQKNFAKFIEYNLNENSFV 397 (450)
T ss_dssp SCCCSEEEEEEETTTTEEE
T ss_pred CCCcceEEEEEEcCCCeEE
Confidence 2344567888887777774
No 80
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.77 E-value=0.056 Score=57.34 Aligned_cols=179 Identities=8% Similarity=0.023 Sum_probs=101.0
Q ss_pred CceEEEeccCCCCeeeCCCCCCccccccCCceeEE-eCCEEEEEcCccCCceEEEEECCCCceecCCCCC----CCccce
Q 043540 148 LKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLA-VGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMN----TPRCLF 222 (437)
Q Consensus 148 ~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~----~~r~~~ 222 (437)
..-+..||+.++++..+............ ..++. -++.|++-.. .-+++||+.+++|+...... .+....
T Consensus 426 ~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v-~~i~~d~~g~lwigt~----~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i 500 (795)
T 4a2l_A 426 AGGLSILHRNSGQVENFNQRNSQLVNENV-YAILPDGEGNLWLGTL----SALVRFNPEQRSFTTIEKEKDGTPVVSKQI 500 (795)
T ss_dssp TTEEEEEETTTCCEEEECTTTSCCSCSCE-EEEEECSSSCEEEEES----SCEEEEETTTTEEEECCBCTTCCBCCCCCE
T ss_pred cCceeEEeCCCCcEEEeecCCCCcCCCee-EEEEECCCCCEEEEec----CceeEEeCCCCeEEEccccccccccCCceE
Confidence 35577899998887766532111110000 01111 1466776431 45899999999998765321 111111
Q ss_pred eeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCC---C-cCCcCeeEEEE--CCEEEEEecccCCCCccCC
Q 043540 223 GSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSM---H-KARKMCSGVFM--DGKFYVIGGIGEGSSAMLT 294 (437)
Q Consensus 223 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~---~-~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~ 294 (437)
..... ++.||+... ..+.+||+.++++ ..... . .+-.....+.. +|.|++....
T Consensus 501 ~~i~~d~~g~lWigt~--------~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~--------- 562 (795)
T 4a2l_A 501 TTLFRDSHKRLWIGGE--------EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE--------- 562 (795)
T ss_dssp EEEEECTTCCEEEEES--------SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS---------
T ss_pred EEEEECCCCCEEEEeC--------CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC---------
Confidence 12222 467777532 3478899988888 43211 1 11112223333 5788875322
Q ss_pred eEEEEECCCCceEecCC---CCCcccCCCCcccccccCCCCCEEEEE-CCEEEEEeCCCCeEEEEeCCCCcEEEcc
Q 043540 295 DVEMYDLETGKWTQITD---MFPARIGSDGVSVISAAGEAPPLLAVV-NNELYAADHEKEEVRKFDKGRKLWRTLG 366 (437)
Q Consensus 295 ~v~~yd~~~~~W~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ly~~gg~~~~v~~yd~~~~~W~~v~ 366 (437)
-+..||+.+++++.+.. ++.... .+++.- +|.|++.+ .+.+.+||+++++++...
T Consensus 563 Gl~~~d~~~~~~~~~~~~~gl~~~~i---------------~~i~~d~~g~lWi~t--~~Gl~~~~~~~~~~~~~~ 621 (795)
T 4a2l_A 563 GFYCFNEKDKQIKRYNTTNGLPNNVV---------------YGILEDSFGRLWLST--NRGISCFNPETEKFRNFT 621 (795)
T ss_dssp CEEEEETTTTEEEEECGGGTCSCSCE---------------EEEEECTTSCEEEEE--TTEEEEEETTTTEEEEEC
T ss_pred CceeECCCCCcEEEeCCCCCCchhhe---------------EEEEECCCCCEEEEc--CCceEEEcCCCCcEEEcC
Confidence 28899999998887642 222211 123332 57888875 468999999999988764
No 81
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=96.76 E-value=0.25 Score=44.59 Aligned_cols=147 Identities=8% Similarity=0.067 Sum_probs=84.0
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccc-eeeEEE-CCEEEEEeccCCCCCCCceEEEEECCCCcEEecC
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCL-FGSASL-GEIAILAGGCDPRGKLLKSAELYNSITGTWMPIS 261 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 261 (437)
++.||+... ....+.+||+. ++...... +..... .+++.- ++.+|+.... ...+.+||+. ++++...
T Consensus 30 ~g~l~v~~~--~~~~v~~~~~~-~~~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~------~~~v~~~d~~-g~~~~~~ 98 (300)
T 2qc5_A 30 DGKVWFTQH--KANKISSLDQS-GRIKEFEV-PTPDAKVMCLIVSSLGDIWFTENG------ANKIGKLSKK-GGFTEYP 98 (300)
T ss_dssp TSCEEEEET--TTTEEEEECTT-SCEEEEEC-SSTTCCEEEEEECTTSCEEEEETT------TTEEEEECTT-SCEEEEE
T ss_pred CCCEEEEcC--CCCeEEEECCC-CceEEEEC-CCCCCcceeEEECCCCCEEEEecC------CCeEEEECCC-CCeEEec
Confidence 577888642 23578899988 66665321 111112 233332 4678887532 2568899988 7776443
Q ss_pred CCCcCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEE-E
Q 043540 262 SMHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV-V 338 (437)
Q Consensus 262 ~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 338 (437)
. +........+.+ +|++|+..... ..+..||+. ++...+. ++..... +..++. -
T Consensus 99 ~-~~~~~~~~~i~~~~~g~l~v~~~~~-------~~i~~~~~~-g~~~~~~-~~~~~~~-------------~~~i~~d~ 155 (300)
T 2qc5_A 99 L-PQPDSGPYGITEGLNGDIWFTQLNG-------DRIGKLTAD-GTIYEYD-LPNKGSY-------------PAFITLGS 155 (300)
T ss_dssp C-SSTTCCEEEEEECSTTCEEEEETTT-------TEEEEECTT-SCEEEEE-CSSTTCC-------------EEEEEECT
T ss_pred C-CCCCCCCccceECCCCCEEEEccCC-------CeEEEECCC-CCEEEcc-CCCCCCC-------------ceeEEECC
Confidence 2 211122233333 68899875422 358889987 6665442 1111111 022333 3
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCcEEEc
Q 043540 339 NNELYAADHEKEEVRKFDKGRKLWRTL 365 (437)
Q Consensus 339 ~~~ly~~gg~~~~v~~yd~~~~~W~~v 365 (437)
+|+||+.......|++||+ +++...+
T Consensus 156 ~g~l~v~~~~~~~i~~~~~-~g~~~~~ 181 (300)
T 2qc5_A 156 DNALWFTENQNNSIGRITN-TGKLEEY 181 (300)
T ss_dssp TSSEEEEETTTTEEEEECT-TCCEEEE
T ss_pred CCCEEEEecCCCeEEEECC-CCcEEEe
Confidence 5789998766778999999 6666654
No 82
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=96.72 E-value=0.28 Score=44.67 Aligned_cols=207 Identities=8% Similarity=-0.058 Sum_probs=106.3
Q ss_pred EEEEecCceEEEeccCCCC--eeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCc--eecCCCCCC
Q 043540 142 VYFSCKLKEWEAFDPIHHR--WMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNT--WSTGMTMNT 217 (437)
Q Consensus 142 l~~~~~~~~~~~yDp~~~~--W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~--W~~~~~~~~ 217 (437)
++.......+.++|+.+++ |+.-..-. .. . +...+.-++.+++.+ .+.++.||+ +++ |+.-.+ .
T Consensus 8 lv~~~~~~~v~~~d~~tG~~~w~~~~~~~-~~-~---~~~~~~pdG~ilvs~----~~~V~~~d~-~G~~~W~~~~~--~ 75 (276)
T 3no2_A 8 LVGGSGWNKIAIINKDTKEIVWEYPLEKG-WE-C---NSVAATKAGEILFSY----SKGAKMITR-DGRELWNIAAP--A 75 (276)
T ss_dssp EEECTTCSEEEEEETTTTEEEEEEECCTT-CC-C---CEEEECTTSCEEEEC----BSEEEEECT-TSCEEEEEECC--T
T ss_pred EEeeCCCCEEEEEECCCCeEEEEeCCCcc-CC-C---cCeEECCCCCEEEeC----CCCEEEECC-CCCEEEEEcCC--C
Confidence 3333344667888987764 65432110 01 1 111234477787743 356899999 553 654321 1
Q ss_pred CccceeeEE-ECCEEEEEeccCCCCCCCceEEEEECCCCc-EEec--CCCCcC--CcCeeEEEECCEEEEEecccCCCCc
Q 043540 218 PRCLFGSAS-LGEIAILAGGCDPRGKLLKSAELYNSITGT-WMPI--SSMHKA--RKMCSGVFMDGKFYVIGGIGEGSSA 291 (437)
Q Consensus 218 ~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~--~~~~~~--r~~~~~~~~~g~lyv~GG~~~~~~~ 291 (437)
....+++.. -++++++....+ ...+..+|+.-.. |+.- ...+.+ .........+|.+++....+
T Consensus 76 ~~~~~~~~~~~dG~~lv~~~~~-----~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~----- 145 (276)
T 3no2_A 76 GCEMQTARILPDGNALVAWCGH-----PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFAT----- 145 (276)
T ss_dssp TCEEEEEEECTTSCEEEEEEST-----TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTT-----
T ss_pred CccccccEECCCCCEEEEecCC-----CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCC-----
Confidence 111223333 356666664321 2467888874432 4432 111111 11222334477777765432
Q ss_pred cCCeEEEEECCCCc--eEecCCCCCcccCCCCcccccccCCCCCEEEE-ECCEEEEEeCCCCeEEEEeCCCCc--EEEcc
Q 043540 292 MLTDVEMYDLETGK--WTQITDMFPARIGSDGVSVISAAGEAPPLLAV-VNNELYAADHEKEEVRKFDKGRKL--WRTLG 366 (437)
Q Consensus 292 ~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~~~v~~yd~~~~~--W~~v~ 366 (437)
..+.+||++ ++ |+.-.. . . . ..+.. .+|.+++.+.....|..+|+++.+ |+.-.
T Consensus 146 --~~v~~~d~~-G~~~w~~~~~--~-~-~--------------~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~ 204 (276)
T 3no2_A 146 --SEVREIAPN-GQLLNSVKLS--G-T-P--------------FSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNA 204 (276)
T ss_dssp --TEEEEECTT-SCEEEEEECS--S-C-C--------------CEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEG
T ss_pred --CEEEEECCC-CCEEEEEECC--C-C-c--------------cceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecC
Confidence 358999987 43 654322 0 1 1 22333 478888888777789999999665 66542
Q ss_pred -CCCCcccCCCcccEEEEEeCCEEEEEc
Q 043540 367 -RLPEQASSMNGWGLAFRACGDQLIVIG 393 (437)
Q Consensus 367 -~lp~~~~~~~~~~~a~~~~~~~l~v~G 393 (437)
.++..+. ..........++.+||..
T Consensus 205 ~~~~~~~l--~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 205 NDIEGVQL--FFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp GGSBSCCC--SEEEEEEECTTSCEEEEE
T ss_pred CCCCCccc--cccccceEcCCCCEEEEe
Confidence 2222111 111222334578899886
No 83
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=96.71 E-value=0.076 Score=49.09 Aligned_cols=231 Identities=12% Similarity=0.115 Sum_probs=108.7
Q ss_pred EEEEEec-CceEEEeccCCCCe-e-eCCCCCCccccccCCceeEEe-CCEEEEEcCccCCceEEEEECCCCceecCCCCC
Q 043540 141 WVYFSCK-LKEWEAFDPIHHRW-M-HLPPMNASDCFMCADKESLAV-GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMN 216 (437)
Q Consensus 141 ~l~~~~~-~~~~~~yDp~~~~W-~-~l~~~p~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~ 216 (437)
++|+... ...+..+|+.+++. . .+.....+.. + ..+.- +..+|+..+......+.+||+.+++....-+.
T Consensus 53 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~--~---~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~- 126 (331)
T 3u4y_A 53 NVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMA--D---VDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI- 126 (331)
T ss_dssp EEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCC--C---EEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-
T ss_pred EEEEEeCCCCeEEEEECCCCceeEEecccCCCCcc--c---eEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-
Confidence 4454433 45788899988764 2 2221111111 0 11222 34566322221223799999988775443221
Q ss_pred CCccceeeEEE-CC-EEEEEeccCCCCCCCce-EEEEECCCCc-EEec--CCCCcCCcCeeEEEE-CCE-EEEEecccCC
Q 043540 217 TPRCLFGSASL-GE-IAILAGGCDPRGKLLKS-AELYNSITGT-WMPI--SSMHKARKMCSGVFM-DGK-FYVIGGIGEG 288 (437)
Q Consensus 217 ~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~-~~~yd~~t~~-W~~~--~~~~~~r~~~~~~~~-~g~-lyv~GG~~~~ 288 (437)
....+.++.. ++ .+|+.+..+ .. +.+|+...+. -... ..++........++. +|+ +|+.+...
T Consensus 127 -~~~~~~~~~spdg~~l~~~~~~~------~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~-- 197 (331)
T 3u4y_A 127 -PYDAVGIAISPNGNGLILIDRSS------ANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIG-- 197 (331)
T ss_dssp -CTTEEEEEECTTSSCEEEEEETT------TTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTT--
T ss_pred -CCCccceEECCCCCEEEEEecCC------CceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCC--
Confidence 1112333333 33 588775532 33 6667655432 1111 001111111222222 564 77775432
Q ss_pred CCccCCeEEEEECCCCce-EecCCCCCcccCCCCcccccccCCCCCEEEE-ECCE-EEEEeCCCCeEEEEeCCCCcEEEc
Q 043540 289 SSAMLTDVEMYDLETGKW-TQITDMFPARIGSDGVSVISAAGEAPPLLAV-VNNE-LYAADHEKEEVRKFDKGRKLWRTL 365 (437)
Q Consensus 289 ~~~~~~~v~~yd~~~~~W-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-ly~~gg~~~~v~~yd~~~~~W~~v 365 (437)
..+..||+.+++. +.+..++..... ..++. -+|+ ||+.....+.|.+||.++.+...+
T Consensus 198 -----~~v~v~d~~~~~~~~~~~~~~~~~~~--------------~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~ 258 (331)
T 3u4y_A 198 -----NSIGILETQNPENITLLNAVGTNNLP--------------GTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFV 258 (331)
T ss_dssp -----TEEEEEECSSTTSCEEEEEEECSSCC--------------CCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEE
T ss_pred -----CeEEEEECCCCcccceeeeccCCCCC--------------ceEEECCCCCEEEEEEcCCCEEEEEECCCCceeee
Confidence 3689999987765 112222211111 12333 2555 777765567799999999887655
Q ss_pred cCCCCc----ccCCCc-ccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecC
Q 043540 366 GRLPEQ----ASSMNG-WGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPD 411 (437)
Q Consensus 366 ~~lp~~----~~~~~~-~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d 411 (437)
..++.. ...... .+.++..-+..||+.+... ..+.+|..+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~------~~v~v~d~~ 303 (331)
T 3u4y_A 259 KSFGHGLLIDPRPLFGANQMALNKTETKLFISANIS------RELKVFTIS 303 (331)
T ss_dssp EEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTT------TEEEEEETT
T ss_pred cccccccccCCCCcccccceEECCCCCEEEEecCCC------CcEEEEEec
Confidence 433222 110000 1134434455677776432 235566554
No 84
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=96.65 E-value=0.26 Score=44.96 Aligned_cols=201 Identities=10% Similarity=0.134 Sum_probs=95.7
Q ss_pred CEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEEC----CEEEEEeccCCCCCCCceEEEEECCCCc-EEe
Q 043540 185 TELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLG----EIAILAGGCDPRGKLLKSAELYNSITGT-WMP 259 (437)
Q Consensus 185 ~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~----~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~ 259 (437)
+.+++.|+. ...+.+||..+++|..+..+........++.+. +.+++.|+.+ ..+.+||..++. +..
T Consensus 67 g~~l~s~s~--D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d------~~v~~wd~~~~~~~~~ 138 (297)
T 2pm7_B 67 GTILASCSY--DGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD------GKVSVVEFKENGTTSP 138 (297)
T ss_dssp CSEEEEEET--TTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEEBCSSSCBCC
T ss_pred CCEEEEEcC--CCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECC------CcEEEEEecCCCceee
Confidence 455666543 356888999888776554322211222233331 4566676654 567788876652 211
Q ss_pred cCCCCcCCcCeeEEEE---------------CCEEEEEecccCCCCccCCeEEEEECCCCc--eEecCCCCCcccCCCCc
Q 043540 260 ISSMHKARKMCSGVFM---------------DGKFYVIGGIGEGSSAMLTDVEMYDLETGK--WTQITDMFPARIGSDGV 322 (437)
Q Consensus 260 ~~~~~~~r~~~~~~~~---------------~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~ 322 (437)
. .+.........+.. ++++++.|+.+ ..+..||+.+.. |..+..+......
T Consensus 139 ~-~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D-------~~v~lwd~~~~~~~~~~~~~l~~H~~~---- 206 (297)
T 2pm7_B 139 I-IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD-------NLVKIWKYNSDAQTYVLESTLEGHSDW---- 206 (297)
T ss_dssp E-EEECCSSCEEEEEECCCC------------CCEEEEEETT-------SCEEEEEEETTTTEEEEEEEECCCSSC----
T ss_pred e-eeecccCccceEeecCCcccccccCCCCCCcceEEEEcCC-------CcEEEEEEcCCCceEEEEEEecCCCCc----
Confidence 0 00000111111111 24577777765 247777766543 5433322211111
Q ss_pred ccccccCCCCCEEEEE-C---CEEEEEeCCCCeEEEEeCCCC--cEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCCC
Q 043540 323 SVISAAGEAPPLLAVV-N---NELYAADHEKEEVRKFDKGRK--LWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPR 396 (437)
Q Consensus 323 ~~~~~~~~~~~~~~~~-~---~~ly~~gg~~~~v~~yd~~~~--~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~ 396 (437)
+ ..++.. + +.+++.++..+.|.+||..+. .|........... ..-+..++ ..++++++.||.+
T Consensus 207 V---------~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~-~~v~~~~~-s~~g~~las~~~D 275 (297)
T 2pm7_B 207 V---------RDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFP-DVLWRASW-SLSGNVLALSGGD 275 (297)
T ss_dssp E---------EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCS-SCEEEEEE-CSSSCCEEEEETT
T ss_pred e---------EEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCC-CcEEEEEE-CCCCCEEEEEcCC
Confidence 0 112221 2 367777777778999988663 4653211000000 00012222 2356667777654
Q ss_pred CCCCCeeEEEeeecCCCCCCceecCcc
Q 043540 397 DSGGGIVELNGWVPDEGPPHWKLLARQ 423 (437)
Q Consensus 397 ~~~~~~~~~~~~~~d~~~~~W~~l~~~ 423 (437)
..+.+|..+. ...|..+..+
T Consensus 276 ------~~v~lw~~~~-~g~w~~~~~~ 295 (297)
T 2pm7_B 276 ------NKVTLWKENL-EGKWEPAGEV 295 (297)
T ss_dssp ------SCEEEEEECT-TSCEEEC---
T ss_pred ------CcEEEEEECC-CCcEEecccc
Confidence 1367887764 3679887654
No 85
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=96.63 E-value=0.4 Score=43.80 Aligned_cols=188 Identities=11% Similarity=0.128 Sum_probs=93.9
Q ss_pred cEEEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCc
Q 043540 140 HWVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPR 219 (437)
Q Consensus 140 ~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r 219 (437)
.+++.......+..||..+.+-... +........ .....-++.+++.|+. ...+.+||..+++-... ++...
T Consensus 78 ~~l~s~~~d~~i~vwd~~~~~~~~~--~~~~~~~v~--~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~--~~~~~ 149 (312)
T 4ery_A 78 NLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVF--CCNFNPQSNLIVSGSF--DESVRIWDVKTGKCLKT--LPAHS 149 (312)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEE--EECCSSCEE--EEEECSSSSEEEEEET--TSCEEEEETTTCCEEEE--ECCCS
T ss_pred CEEEEECCCCEEEEEECCCCcEEEE--EcCCCCCEE--EEEEcCCCCEEEEEeC--CCcEEEEECCCCEEEEE--ecCCC
Confidence 4455555556788888877653221 100000000 0001123445555543 34688899887653221 11111
Q ss_pred cceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE--CCEEEEEecccCCCCccCCe
Q 043540 220 CLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTD 295 (437)
Q Consensus 220 ~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~ 295 (437)
.......+ ++.+++.|+.+ ..+.+||..+++-...-... .......+.+ +++.++.|+.+ ..
T Consensus 150 ~~v~~~~~~~~~~~l~~~~~d------~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d-------~~ 215 (312)
T 4ery_A 150 DPVSAVHFNRDGSLIVSSSYD------GLCRIWDTASGQCLKTLIDD-DNPPVSFVKFSPNGKYILAATLD-------NT 215 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETT------SCEEEEETTTCCEEEEECCS-SCCCEEEEEECTTSSEEEEEETT-------TE
T ss_pred CcEEEEEEcCCCCEEEEEeCC------CcEEEEECCCCceeeEEecc-CCCceEEEEECCCCCEEEEEcCC-------Ce
Confidence 11222222 56677777754 45788999887643211111 1111222222 56777776654 35
Q ss_pred EEEEECCCCceEec-CCCCCcccCCCCcccccccCCCCCEEEE-ECCEEEEEeCCCCeEEEEeCCCCcE
Q 043540 296 VEMYDLETGKWTQI-TDMFPARIGSDGVSVISAAGEAPPLLAV-VNNELYAADHEKEEVRKFDKGRKLW 362 (437)
Q Consensus 296 v~~yd~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~~~v~~yd~~~~~W 362 (437)
+..||+.+.+-... ......... ...... .++.+++.|+..+.|.+||..+++=
T Consensus 216 i~iwd~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~ 271 (312)
T 4ery_A 216 LKLWDYSKGKCLKTYTGHKNEKYC-------------IFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 271 (312)
T ss_dssp EEEEETTTTEEEEEECSSCCSSSC-------------CCEEEECSSSCEEEECCTTSCEEEEETTTCCE
T ss_pred EEEEECCCCcEEEEEEecCCceEE-------------EEEEEEeCCCcEEEEECCCCEEEEEECCCchh
Confidence 88999987653222 111111111 011122 3577778888888899999988653
No 86
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.58 E-value=0.89 Score=47.19 Aligned_cols=209 Identities=16% Similarity=0.190 Sum_probs=111.2
Q ss_pred cEEEEEecCceEEEeccCCC--CeeeCCCCCCcc----ccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCc--eec
Q 043540 140 HWVYFSCKLKEWEAFDPIHH--RWMHLPPMNASD----CFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNT--WST 211 (437)
Q Consensus 140 ~~l~~~~~~~~~~~yDp~~~--~W~~l~~~p~~~----~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~--W~~ 211 (437)
..+|+......++++|..++ .|+.-...+... +........+..++.||+.. ....++.+|..|++ |+.
T Consensus 78 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~---~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGA---WDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEEC---TTSEEEEEETTTCCEEEEE
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEc---CCCEEEEEECCCCCEEeee
Confidence 34566555567899998876 587644332211 11111223456788888864 23579999998875 765
Q ss_pred CCC--CCC-CccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCc--EEecCCCCcC--------------------
Q 043540 212 GMT--MNT-PRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGT--WMPISSMHKA-------------------- 266 (437)
Q Consensus 212 ~~~--~~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~-------------------- 266 (437)
-.. ... .....+-++.++.||+..+..+. .....+..||..|++ |+.-...+..
T Consensus 155 ~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~-~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g 233 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRVFKGKVIIGNGGAEY-GVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG 233 (677)
T ss_dssp ETTTTCCSSCBCCSCCEEETTEEEECCBCTTT-CCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred cCCcCcCcCcccccCcEEECCEEEEEeccccc-CCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence 322 111 11222345668888876543221 124679999999887 8754321110
Q ss_pred C--------cCeeEEEE---CCEEEEEecccC-----------CCCccCCeEEEEECCCCc--eEecCCCCCcccCCCCc
Q 043540 267 R--------KMCSGVFM---DGKFYVIGGIGE-----------GSSAMLTDVEMYDLETGK--WTQITDMFPARIGSDGV 322 (437)
Q Consensus 267 r--------~~~~~~~~---~g~lyv~GG~~~-----------~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~ 322 (437)
. .......+ ++.||+-.+... +.......+..+|+.+++ |+.-..........
T Consensus 234 ~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~--- 310 (677)
T 1kb0_A 234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYT--- 310 (677)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCC---
T ss_pred ceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccc---
Confidence 0 00012222 578887654320 223345679999999875 76432111111000
Q ss_pred ccccccCCCCCEEEE--ECC---EEEEEeCCCCeEEEEeCCCCc
Q 043540 323 SVISAAGEAPPLLAV--VNN---ELYAADHEKEEVRKFDKGRKL 361 (437)
Q Consensus 323 ~~~~~~~~~~~~~~~--~~~---~ly~~gg~~~~v~~yd~~~~~ 361 (437)
....+.++. .+| .+++++.....++++|.++.+
T Consensus 311 ------~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~ 348 (677)
T 1kb0_A 311 ------STQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK 348 (677)
T ss_dssp ------CCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred ------cCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 000122222 256 556666566678888887764
No 87
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.56 E-value=0.082 Score=55.71 Aligned_cols=189 Identities=13% Similarity=0.141 Sum_probs=96.7
Q ss_pred cccEEEEEecCceEEEeccCCCCeee-CCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCceecCCCCC
Q 043540 138 IEHWVYFSCKLKEWEAFDPIHHRWMH-LPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMN 216 (437)
Q Consensus 138 ~~~~l~~~~~~~~~~~yDp~~~~W~~-l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~ 216 (437)
..+++.+......+..||..+++... +.....+.. .....-++..++.|+. ...+.+||..+++....-...
T Consensus 24 ~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~-----~~~~s~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~ 96 (814)
T 3mkq_A 24 TEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVR-----AGKFIARKNWIIVGSD--DFRIRVFNYNTGEKVVDFEAH 96 (814)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-----EEEEEGGGTEEEEEET--TSEEEEEETTTCCEEEEEECC
T ss_pred CCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEE-----EEEEeCCCCEEEEEeC--CCeEEEEECCCCcEEEEEecC
Confidence 34566666666778889987765432 211111110 0112234555556543 457889998887654321111
Q ss_pred CCccceeeEE-ECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcC-eeEEEE--CCEEEEEecccCCCCcc
Q 043540 217 TPRCLFGSAS-LGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKM-CSGVFM--DGKFYVIGGIGEGSSAM 292 (437)
Q Consensus 217 ~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~-~~~~~~--~g~lyv~GG~~~~~~~~ 292 (437)
...-.+++. -++..++.|+.+ ..+.+||..++ |.....+...... ..+++. ++.+++.|+.+
T Consensus 97 -~~~v~~~~~s~~~~~l~~~~~d------g~i~vw~~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d------ 162 (814)
T 3mkq_A 97 -PDYIRSIAVHPTKPYVLSGSDD------LTVKLWNWENN-WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD------ 162 (814)
T ss_dssp -SSCEEEEEECSSSSEEEEEETT------SEEEEEEGGGT-SEEEEEEECCSSCEEEEEEETTEEEEEEEEETT------
T ss_pred -CCCEEEEEEeCCCCEEEEEcCC------CEEEEEECCCC-ceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCC------
Confidence 111112222 245555566543 56888998776 2222112211122 223333 46677777664
Q ss_pred CCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE---CCEEEEEeCCCCeEEEEeCCCCcE
Q 043540 293 LTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV---NNELYAADHEKEEVRKFDKGRKLW 362 (437)
Q Consensus 293 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ly~~gg~~~~v~~yd~~~~~W 362 (437)
..+..||+.+..-...-........ ..++.. ++.+++.|+..+.|..||..+.+-
T Consensus 163 -g~v~vwd~~~~~~~~~~~~~~~~~v--------------~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 220 (814)
T 3mkq_A 163 -RTVKVWSLGQSTPNFTLTTGQERGV--------------NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC 220 (814)
T ss_dssp -SEEEEEETTCSSCSEEEECCCTTCC--------------CEEEECCSTTCCEEEEECTTSEEEEEETTTTEE
T ss_pred -CeEEEEECCCCcceeEEecCCCCCE--------------EEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE
Confidence 3588899876432111111110001 122322 677888888888999999987653
No 88
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.082 Score=50.38 Aligned_cols=143 Identities=12% Similarity=0.114 Sum_probs=71.8
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEE-CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCC
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL-GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISS 262 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 262 (437)
++. ++.|+. ...+.+||..+++-...-.. ....-..++.. ++..++.|+.+ ..+.+||..+.+-...
T Consensus 217 ~~~-~~~~~~--~g~i~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~-- 284 (425)
T 1r5m_A 217 DDK-FVIPGP--KGAIFVYQITEKTPTGKLIG-HHGPISVLEFNDTNKLLLSASDD------GTLRIWHGGNGNSQNC-- 284 (425)
T ss_dssp TTE-EEEECG--GGCEEEEETTCSSCSEEECC-CSSCEEEEEEETTTTEEEEEETT------SCEEEECSSSBSCSEE--
T ss_pred CCE-EEEEcC--CCeEEEEEcCCCceeeeecc-CCCceEEEEECCCCCEEEEEcCC------CEEEEEECCCCccceE--
Confidence 444 445543 34688999887643211111 11111122222 55666666643 4578888876542111
Q ss_pred CCcCCc-CeeEEEE-CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEE-EC
Q 043540 263 MHKARK-MCSGVFM-DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV-VN 339 (437)
Q Consensus 263 ~~~~r~-~~~~~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 339 (437)
+..... ...+.+. ++ +++.++.+ ..+..||+.+.+-...-....... ..++. -+
T Consensus 285 ~~~~~~~i~~~~~~~~~-~l~~~~~d-------~~i~i~d~~~~~~~~~~~~~~~~i---------------~~~~~s~~ 341 (425)
T 1r5m_A 285 FYGHSQSIVSASWVGDD-KVISCSMD-------GSVRLWSLKQNTLLALSIVDGVPI---------------FAGRISQD 341 (425)
T ss_dssp ECCCSSCEEEEEEETTT-EEEEEETT-------SEEEEEETTTTEEEEEEECTTCCE---------------EEEEECTT
T ss_pred ecCCCccEEEEEECCCC-EEEEEeCC-------CcEEEEECCCCcEeEecccCCccE---------------EEEEEcCC
Confidence 111111 2233333 56 55666554 368899998765322211111100 11222 25
Q ss_pred CEEEEEeCCCCeEEEEeCCCCc
Q 043540 340 NELYAADHEKEEVRKFDKGRKL 361 (437)
Q Consensus 340 ~~ly~~gg~~~~v~~yd~~~~~ 361 (437)
+++++.++..+.|.+||..+..
T Consensus 342 ~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 342 GQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp SSEEEEEETTSCEEEEECHHHH
T ss_pred CCEEEEEECCCeEEEEECCCCc
Confidence 7777777777789999987654
No 89
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=96.49 E-value=0.18 Score=45.92 Aligned_cols=172 Identities=15% Similarity=0.075 Sum_probs=89.1
Q ss_pred CCEEEEEcCccCCceEEEEECCCCc--eecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCc--EEe
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNT--WSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGT--WMP 259 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~ 259 (437)
.+.+++.|.. ...+.++|+.|++ |+.-..-. .......+.-++.+++.+ ...+..||+ +++ |+.
T Consensus 4 ~~~~lv~~~~--~~~v~~~d~~tG~~~w~~~~~~~-~~~~~~~~~pdG~ilvs~--------~~~V~~~d~-~G~~~W~~ 71 (276)
T 3no2_A 4 PQHLLVGGSG--WNKIAIINKDTKEIVWEYPLEKG-WECNSVAATKAGEILFSY--------SKGAKMITR-DGRELWNI 71 (276)
T ss_dssp CCEEEEECTT--CSEEEEEETTTTEEEEEEECCTT-CCCCEEEECTTSCEEEEC--------BSEEEEECT-TSCEEEEE
T ss_pred CCcEEEeeCC--CCEEEEEECCCCeEEEEeCCCcc-CCCcCeEECCCCCEEEeC--------CCCEEEECC-CCCEEEEE
Confidence 3566666642 3568888987775 65432110 122223333477888742 156899999 554 765
Q ss_pred cCCCCcCCcCeeEEE-ECCEEEEEecccCCCCccCCeEEEEECCCCc-eEec-C-CCCCcccCCCCcccccccCCCCCEE
Q 043540 260 ISSMHKARKMCSGVF-MDGKFYVIGGIGEGSSAMLTDVEMYDLETGK-WTQI-T-DMFPARIGSDGVSVISAAGEAPPLL 335 (437)
Q Consensus 260 ~~~~~~~r~~~~~~~-~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~-W~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (437)
-.. .....+++.. .+|++++..... ...+..+|++.+. |+.- . ........ .....
T Consensus 72 ~~~--~~~~~~~~~~~~dG~~lv~~~~~------~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~------------~~~v~ 131 (276)
T 3no2_A 72 AAP--AGCEMQTARILPDGNALVAWCGH------PSTILEVNMKGEVLSKTEFETGIERPHAQ------------FRQIN 131 (276)
T ss_dssp ECC--TTCEEEEEEECTTSCEEEEEEST------TEEEEEECTTSCEEEEEEECCSCSSGGGS------------CSCCE
T ss_pred cCC--CCccccccEECCCCCEEEEecCC------CCEEEEEeCCCCEEEEEeccCCCCccccc------------ccCce
Confidence 432 1111223333 378887765431 1257788875442 4321 1 11111101 00123
Q ss_pred EEECCEEEEEeCCCCeEEEEeCCCC-cEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCC
Q 043540 336 AVVNNELYAADHEKEEVRKFDKGRK-LWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGP 395 (437)
Q Consensus 336 ~~~~~~ly~~gg~~~~v~~yd~~~~-~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~ 395 (437)
...+|.+++.......|.+||++-+ .|+.-.. ... ++ +....++.++|++..
T Consensus 132 ~~~~G~~lv~~~~~~~v~~~d~~G~~~w~~~~~--~~~-----~~-~~~~~~g~~~v~~~~ 184 (276)
T 3no2_A 132 KNKKGNYLVPLFATSEVREIAPNGQLLNSVKLS--GTP-----FS-SAFLDNGDCLVACGD 184 (276)
T ss_dssp ECTTSCEEEEETTTTEEEEECTTSCEEEEEECS--SCC-----CE-EEECTTSCEEEECBT
T ss_pred ECCCCCEEEEecCCCEEEEECCCCCEEEEEECC--CCc-----cc-eeEcCCCCEEEEeCC
Confidence 3457777777777788999999733 2654332 111 22 233446788887653
No 90
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=96.46 E-value=0.38 Score=45.10 Aligned_cols=116 Identities=18% Similarity=0.205 Sum_probs=64.3
Q ss_pred CCE-EEEEecccCCCCccCCeEEEEECCCCceEecCCC---CCcccCCCCcccccccCCCCCEEEEE--CCE-EEEEeCC
Q 043540 276 DGK-FYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDM---FPARIGSDGVSVISAAGEAPPLLAVV--NNE-LYAADHE 348 (437)
Q Consensus 276 ~g~-lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-ly~~gg~ 348 (437)
+|+ +|+.+... ..+.+||+.+++.+.+..+ +..... +..+.+ +|+ ||+....
T Consensus 221 dg~~l~v~~~~~-------~~v~v~~~~~g~~~~~~~~~~~~~~~~~--------------~~~i~~spdg~~l~v~~~~ 279 (361)
T 3scy_A 221 DGKFAYLINEIG-------GTVIAFRYADGMLDEIQTVAADTVNAQG--------------SGDIHLSPDGKYLYASNRL 279 (361)
T ss_dssp TSSEEEEEETTT-------CEEEEEEEETTEEEEEEEEESCSSCCCC--------------EEEEEECTTSSEEEEEECS
T ss_pred CCCEEEEEcCCC-------CeEEEEEecCCceEEeEEEecCCCCCCC--------------cccEEECCCCCEEEEECCC
Confidence 564 77765322 3588899888877555432 222111 122222 554 6666554
Q ss_pred -CCeEEEEeC--CCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCceecC
Q 043540 349 -KEEVRKFDK--GRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKLLA 421 (437)
Q Consensus 349 -~~~v~~yd~--~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~ 421 (437)
.+.|.+|+. .+++++.+..++.... . .++++..-+..||+.+... ..+.+|.+|..+.+-+.+.
T Consensus 280 ~~~~i~v~~~~~~~g~~~~~~~~~~g~~-~--~~~~~spdg~~l~~~~~~~------~~v~v~~~d~~~g~~~~~~ 346 (361)
T 3scy_A 280 KADGVAIFKVDETNGTLTKVGYQLTGIH-P--RNFIITPNGKYLLVACRDT------NVIQIFERDQATGLLTDIK 346 (361)
T ss_dssp SSCEEEEEEECTTTCCEEEEEEEECSSC-C--CEEEECTTSCEEEEEETTT------TEEEEEEECTTTCCEEECS
T ss_pred CCCEEEEEEEcCCCCcEEEeeEecCCCC-C--ceEEECCCCCEEEEEECCC------CCEEEEEEECCCCcEeecc
Confidence 567778776 4677777765543111 1 1344323334566665322 2577888898888777664
No 91
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=96.43 E-value=0.097 Score=47.95 Aligned_cols=205 Identities=9% Similarity=0.056 Sum_probs=97.3
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEE----CCEEEEEeccCCCCCCCceEEEEECCCCcEEe
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL----GEIAILAGGCDPRGKLLKSAELYNSITGTWMP 259 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 259 (437)
++..++.|+.. ..+.+||..+++.+.+..+..-......+.+ ++.+++.|+.+ ..+.++|..+++|..
T Consensus 20 ~g~~las~s~D--~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D------~~v~iWd~~~~~~~~ 91 (297)
T 2pm7_B 20 YGKRMATCSSD--KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD------GKVMIWKEENGRWSQ 91 (297)
T ss_dssp TSSEEEEEETT--SCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT------TEEEEEEBSSSCBCC
T ss_pred CCCEEEEEeCC--CEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCC------CEEEEEEcCCCceEE
Confidence 45555555432 4577788765544333222211111222222 25677777754 568889998887765
Q ss_pred cCCCCcCCcCeeEEEE--C--CEEEEEecccCCCCccCCeEEEEECCCCc-eEecCCCCCcccCCCCcc---cccccCC-
Q 043540 260 ISSMHKARKMCSGVFM--D--GKFYVIGGIGEGSSAMLTDVEMYDLETGK-WTQITDMFPARIGSDGVS---VISAAGE- 330 (437)
Q Consensus 260 ~~~~~~~r~~~~~~~~--~--g~lyv~GG~~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~~~~~~~~~---~~~~~~~- 330 (437)
+..+.........+.+ + +.+++.|+.+ ..+..||+.+.. +... ....|...+ ...+...
T Consensus 92 ~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d-------~~v~~wd~~~~~~~~~~-----~~~~h~~~v~~~~~~p~~~~ 159 (297)
T 2pm7_B 92 IAVHAVHSASVNSVQWAPHEYGPMLLVASSD-------GKVSVVEFKENGTTSPI-----IIDAHAIGVNSASWAPATIE 159 (297)
T ss_dssp CEEECCCSSCEEEEEECCGGGCSEEEEEETT-------SEEEEEEBCSSSCBCCE-----EEECCSSCEEEEEECCCC--
T ss_pred EEEeecCCCceeEEEeCcCCCCcEEEEEECC-------CcEEEEEecCCCceeee-----eeecccCccceEeecCCccc
Confidence 5433322222333333 2 5677777654 357788887652 2110 001110000 0000000
Q ss_pred -CCCEEEEECCEEEEEeCCCCeEEEEeCCCC--cEEEccCCCCcccCCCcccEEEEEeC----CEEEEEcCCCCCCCCee
Q 043540 331 -APPLLAVVNNELYAADHEKEEVRKFDKGRK--LWRTLGRLPEQASSMNGWGLAFRACG----DQLIVIGGPRDSGGGIV 403 (437)
Q Consensus 331 -~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~--~W~~v~~lp~~~~~~~~~~~a~~~~~----~~l~v~GG~~~~~~~~~ 403 (437)
........++++++.|+..+.|.+||..+. .|..+..+..... +-.++.... +.+++.|+.+ .
T Consensus 160 ~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~----~V~~v~~sp~~~~~~~las~s~D------~ 229 (297)
T 2pm7_B 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD----WVRDVAWSPTVLLRSYMASVSQD------R 229 (297)
T ss_dssp ----------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS----CEEEEEECCCCSSSEEEEEEETT------S
T ss_pred ccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCC----ceEEEEECCCCCCceEEEEEECC------C
Confidence 000000012457777777778889987654 3655444432211 112222222 3677777654 2
Q ss_pred EEEeeecCCCCCCce
Q 043540 404 ELNGWVPDEGPPHWK 418 (437)
Q Consensus 404 ~~~~~~~d~~~~~W~ 418 (437)
.+.+|..+.....|.
T Consensus 230 ~v~iWd~~~~~~~~~ 244 (297)
T 2pm7_B 230 TCIIWTQDNEQGPWK 244 (297)
T ss_dssp CEEEEEESSTTSCCE
T ss_pred cEEEEEeCCCCCccc
Confidence 367787765545554
No 92
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=96.41 E-value=0.19 Score=44.93 Aligned_cols=185 Identities=13% Similarity=0.010 Sum_probs=94.4
Q ss_pred ceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCC-CceecCCCCCCCccceeeE-E
Q 043540 149 KEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLT-NTWSTGMTMNTPRCLFGSA-S 226 (437)
Q Consensus 149 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t-~~W~~~~~~~~~r~~~~~~-~ 226 (437)
..+..+|+.+++...+...+.... .....-++..+++++ ...++++|..+ ++...+............+ .
T Consensus 22 ~~i~~~d~~~~~~~~~~~~~~~v~-----~~~~spdg~~l~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 22 SSIEIFNIRTRKMRVVWQTPELFE-----APNWSPDGKYLLLNS---EGLLYRLSLAGDPSPEKVDTGFATICNNDHGIS 93 (297)
T ss_dssp EEEEEEETTTTEEEEEEEESSCCE-----EEEECTTSSEEEEEE---TTEEEEEESSSCCSCEECCCTTCCCBCSCCEEC
T ss_pred eeEEEEeCCCCceeeeccCCcceE-----eeEECCCCCEEEEEc---CCeEEEEeCCCCCCceEeccccccccccceEEC
Confidence 456778888777654432211110 011223555555553 34799999998 7766654332211112222 2
Q ss_pred ECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE-CCE-EEEEecccCCCCccCCeEEEEECCCC
Q 043540 227 LGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM-DGK-FYVIGGIGEGSSAMLTDVEMYDLETG 304 (437)
Q Consensus 227 ~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~g~-lyv~GG~~~~~~~~~~~v~~yd~~~~ 304 (437)
-+++.+++++.+.. ....++.+|..++.-+.+..... ....... +++ |++.++.. . ...++.+|+.+.
T Consensus 94 pdg~~l~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~spdg~~l~~~~~~~---~--~~~l~~~~~~~~ 163 (297)
T 2ojh_A 94 PDGALYAISDKVEF--GKSAIYLLPSTGGTPRLMTKNLP---SYWHGWSPDGKSFTYCGIRD---Q--VFDIYSMDIDSG 163 (297)
T ss_dssp TTSSEEEEEECTTT--SSCEEEEEETTCCCCEECCSSSS---EEEEEECTTSSEEEEEEEET---T--EEEEEEEETTTC
T ss_pred CCCCEEEEEEeCCC--CcceEEEEECCCCceEEeecCCC---ccceEECCCCCEEEEEECCC---C--ceEEEEEECCCC
Confidence 35555555553322 23778999988877655543321 1222222 554 55454432 1 124677778777
Q ss_pred ceEecCCCCCcccCCCCcccccccCCCCCEEEE-ECCE-EEEEeC--CCCeEEEEeCCCCcEEEccC
Q 043540 305 KWTQITDMFPARIGSDGVSVISAAGEAPPLLAV-VNNE-LYAADH--EKEEVRKFDKGRKLWRTLGR 367 (437)
Q Consensus 305 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-ly~~gg--~~~~v~~yd~~~~~W~~v~~ 367 (437)
....+........ .++. -+++ |++.+. ....++.++........+..
T Consensus 164 ~~~~~~~~~~~~~----------------~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 214 (297)
T 2ojh_A 164 VETRLTHGEGRND----------------GPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD 214 (297)
T ss_dssp CEEECCCSSSCEE----------------EEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC
T ss_pred cceEcccCCCccc----------------cceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec
Confidence 7666543221111 1222 2454 444442 24567778877777766653
No 93
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=96.40 E-value=0.31 Score=46.58 Aligned_cols=161 Identities=9% Similarity=0.024 Sum_probs=78.5
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEE-CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCC
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL-GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISS 262 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 262 (437)
++.+++.|+. ...+.+||..++.-...-. .....-.+++.. ++..++.|+.+ ..+.+||..+.+- +..
T Consensus 108 ~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d------~~i~iwd~~~~~~--~~~ 176 (420)
T 3vl1_A 108 QMRRFILGTT--EGDIKVLDSNFNLQREIDQ-AHVSEITKLKFFPSGEALISSSQD------MQLKIWSVKDGSN--PRT 176 (420)
T ss_dssp SSCEEEEEET--TSCEEEECTTSCEEEEETT-SSSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTCCC--CEE
T ss_pred CCCEEEEEEC--CCCEEEEeCCCcceeeecc-cccCccEEEEECCCCCEEEEEeCC------CeEEEEeCCCCcC--ceE
Confidence 5666666643 3468889987765433211 111111222222 55666676643 5688999887642 111
Q ss_pred CCcCCcCee-EEEE-CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccc-cc---------cCC
Q 043540 263 MHKARKMCS-GVFM-DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVI-SA---------AGE 330 (437)
Q Consensus 263 ~~~~r~~~~-~~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~-~~---------~~~ 330 (437)
+........ +++. ++++++.|+.+ ..+..||+.+++-...-.........-..+.. |. ...
T Consensus 177 ~~~h~~~v~~~~~~~~~~~l~s~~~d-------~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 249 (420)
T 3vl1_A 177 LIGHRATVTDIAIIDRGRNVLSASLD-------GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSK 249 (420)
T ss_dssp EECCSSCEEEEEEETTTTEEEEEETT-------SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCC
T ss_pred EcCCCCcEEEEEEcCCCCEEEEEcCC-------CcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCc
Confidence 111112222 2233 67777777665 24888998876533221111100000000000 00 000
Q ss_pred CCCEEEEECCEEEEEeCCCCeEEEEeCCCCcE
Q 043540 331 APPLLAVVNNELYAADHEKEEVRKFDKGRKLW 362 (437)
Q Consensus 331 ~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~W 362 (437)
.......-++++++.|+..+.|.+||..+.+-
T Consensus 250 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 281 (420)
T 3vl1_A 250 KNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQ 281 (420)
T ss_dssp CCTTCSSCTTEEEEEEETTSCEEEEETTTCCE
T ss_pred ccceEEcCCCCEEEEEcCCCeEEEEECCCCce
Confidence 00001112677888888788899999987653
No 94
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=96.39 E-value=0.055 Score=51.14 Aligned_cols=183 Identities=9% Similarity=0.069 Sum_probs=86.6
Q ss_pred cCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCc-eecCCCCCCCccceeeE
Q 043540 147 KLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNT-WSTGMTMNTPRCLFGSA 225 (437)
Q Consensus 147 ~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~-W~~~~~~~~~r~~~~~~ 225 (437)
....+..||..++.|..+..+........+ ....-++.+++.|+. ...+.+||..++. |.....+.........+
T Consensus 31 ~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~--~~~s~~~~~l~s~s~--d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~ 106 (377)
T 3dwl_C 31 ATNQVELYEQDGNGWKHARTFSDHDKIVTC--VDWAPKSNRIVTCSQ--DRNAYVYEKRPDGTWKQTLVLLRLNRAATFV 106 (377)
T ss_dssp SSSCBCEEEEETTEEEECCCBCCCSSCEEE--EEECTTTCCEEEEET--TSSEEEC------CCCCEEECCCCSSCEEEE
T ss_pred CCCEEEEEEccCCceEEEEEEecCCceEEE--EEEeCCCCEEEEEeC--CCeEEEEEcCCCCceeeeeEecccCCceEEE
Confidence 345677788888877766655432211100 011224555555543 3468889988876 54433222222222222
Q ss_pred EE--CCEEEEEeccCCCCCCCceEEEEECCCCc-EEecCCCCc-CCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEE
Q 043540 226 SL--GEIAILAGGCDPRGKLLKSAELYNSITGT-WMPISSMHK-ARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMY 299 (437)
Q Consensus 226 ~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~~~-~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~y 299 (437)
.+ +++.++.|+.+ ..+.+||..+++ |..+..+.. .......+.+ ++++++.|+.+ ..+..|
T Consensus 107 ~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-------~~i~iw 173 (377)
T 3dwl_C 107 RWSPNEDKFAVGSGA------RVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCAD-------RKAYVL 173 (377)
T ss_dssp ECCTTSSCCEEEESS------SCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESS-------SCEEEE
T ss_pred EECCCCCEEEEEecC------CeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCC-------CEEEEE
Confidence 22 45666676653 457788887765 433333332 1222233333 67777777765 247888
Q ss_pred ECCCCceEec----------------CCCCCcccCCCCcccccccCCCCCEEEEE--CCEEEEEeCCCCeEEEEeCCCCc
Q 043540 300 DLETGKWTQI----------------TDMFPARIGSDGVSVISAAGEAPPLLAVV--NNELYAADHEKEEVRKFDKGRKL 361 (437)
Q Consensus 300 d~~~~~W~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ly~~gg~~~~v~~yd~~~~~ 361 (437)
|+.+...... ..+ .... . -..+.+ ++++++.++..+.|.+||..+.+
T Consensus 174 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------------~-v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~ 238 (377)
T 3dwl_C 174 SAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGG------------W-VHAVGFSPSGNALAYAGHDSSVTIAYPSAPE 238 (377)
T ss_dssp EECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSS------------S-EEEEEECTTSSCEEEEETTTEEC-CEECSTT
T ss_pred EEEecccCCCccccccccccchhhhhhcc--cCCc------------e-EEEEEECCCCCEEEEEeCCCcEEEEECCCCC
Confidence 8765432211 111 1111 0 112222 67777777777889999988764
No 95
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.38 E-value=1 Score=45.66 Aligned_cols=212 Identities=13% Similarity=0.124 Sum_probs=110.9
Q ss_pred cEEEEEec-CceEEEecc-CCC--CeeeCCCCCCcc----ccccCCceeEEeCCEEEEEcCccCCceEEEEECCCC--ce
Q 043540 140 HWVYFSCK-LKEWEAFDP-IHH--RWMHLPPMNASD----CFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTN--TW 209 (437)
Q Consensus 140 ~~l~~~~~-~~~~~~yDp-~~~--~W~~l~~~p~~~----~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~--~W 209 (437)
..+|+... ...++++|. .++ .|+.-...+... +........+..++.||+... ...++.+|..|+ .|
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA---NGHLLALDAKTGKINW 139 (571)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT---TSEEEEEETTTCCEEE
T ss_pred CEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC---CCEEEEEECCCCCEEE
Confidence 34566555 567899999 776 587643322111 100111234567888888752 357999999887 48
Q ss_pred ecC-CCCCCC-ccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCc--EEecCCCCc------C-------------
Q 043540 210 STG-MTMNTP-RCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGT--WMPISSMHK------A------------- 266 (437)
Q Consensus 210 ~~~-~~~~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~------~------------- 266 (437)
+.- ...+.. ....+-++.++.||+..+..+. .....+..||.+|++ |+.-...+. +
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~-~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~ 218 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAEL-GVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFG 218 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEETTEEEEECBCGGG-TCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSS
T ss_pred EecCCCCCccceeccCCEEECCEEEEEecCCcc-CCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccc
Confidence 643 221111 1112334568888876432111 123678999999876 875432111 0
Q ss_pred ------------CcC----eeEEEE--CCEEEEEecccC--------CCCccCCeEEEEECCCCc--eEecCCCCCcccC
Q 043540 267 ------------RKM----CSGVFM--DGKFYVIGGIGE--------GSSAMLTDVEMYDLETGK--WTQITDMFPARIG 318 (437)
Q Consensus 267 ------------r~~----~~~~~~--~g~lyv~GG~~~--------~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~ 318 (437)
... ...++- ++.+|+-.|... +.......+.++|+.+++ |+.-.........
T Consensus 219 ~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~ 298 (571)
T 2ad6_A 219 LGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDF 298 (571)
T ss_dssp HHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCC
T ss_pred cccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCccccc
Confidence 000 112222 478888655320 112234579999999875 7654221111000
Q ss_pred CCCcccccccCCCCCEEEE--ECC---EEEEEeCCCCeEEEEeCCCCc--EEE
Q 043540 319 SDGVSVISAAGEAPPLLAV--VNN---ELYAADHEKEEVRKFDKGRKL--WRT 364 (437)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~--~~~---~ly~~gg~~~~v~~yd~~~~~--W~~ 364 (437)
. ....+.++. .+| ++++++.....++++|.++.+ |..
T Consensus 299 ~---------~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~ 342 (571)
T 2ad6_A 299 A---------GVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAE 342 (571)
T ss_dssp C---------CCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred c---------cCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeee
Confidence 0 000133332 356 356666556678888887764 653
No 96
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.35 E-value=0.47 Score=45.27 Aligned_cols=232 Identities=10% Similarity=0.113 Sum_probs=110.1
Q ss_pred EEEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCcc
Q 043540 141 WVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRC 220 (437)
Q Consensus 141 ~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~ 220 (437)
++++......+..||..+.+....-. .... .-..+..++.+++.|+. ...+.+||..+..-... .+.....
T Consensus 148 ~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~----~v~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~ 218 (401)
T 4aez_A 148 FLSVGLGNGLVDIYDVESQTKLRTMA--GHQA----RVGCLSWNRHVLSSGSR--SGAIHHHDVRIANHQIG-TLQGHSS 218 (401)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEEC--CCSS----CEEEEEEETTEEEEEET--TSEEEEEETTSSSCEEE-EEECCSS
T ss_pred EEEEECCCCeEEEEECcCCeEEEEec--CCCC----ceEEEEECCCEEEEEcC--CCCEEEEecccCcceee-EEcCCCC
Confidence 34444445567788877665432111 1000 01113345555666543 35788899874321111 1111111
Q ss_pred ceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCe-eEEEE--CCEEEEEecccCCCCccCCe
Q 043540 221 LFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMC-SGVFM--DGKFYVIGGIGEGSSAMLTD 295 (437)
Q Consensus 221 ~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~-~~~~~--~g~lyv~GG~~~~~~~~~~~ 295 (437)
......+ ++..++.|+.+ ..+.+||..+.+-... +....... +.++. +..+++.|+.. .-..
T Consensus 219 ~v~~~~~~~~~~~l~s~~~d------~~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~p~~~~ll~~~~gs-----~d~~ 285 (401)
T 4aez_A 219 EVCGLAWRSDGLQLASGGND------NVVQIWDARSSIPKFT--KTNHNAAVKAVAWCPWQSNLLATGGGT-----MDKQ 285 (401)
T ss_dssp CEEEEEECTTSSEEEEEETT------SCEEEEETTCSSEEEE--ECCCSSCCCEEEECTTSTTEEEEECCT-----TTCE
T ss_pred CeeEEEEcCCCCEEEEEeCC------CeEEEccCCCCCccEE--ecCCcceEEEEEECCCCCCEEEEecCC-----CCCE
Confidence 1222222 56677777754 4688999987653221 11111122 23333 34677776411 1135
Q ss_pred EEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEE-ECCEEEEE--eCCCCeEEEEeCCCCcEEEccCCCCcc
Q 043540 296 VEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV-VNNELYAA--DHEKEEVRKFDKGRKLWRTLGRLPEQA 372 (437)
Q Consensus 296 v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~--gg~~~~v~~yd~~~~~W~~v~~lp~~~ 372 (437)
+..||+.+++-...-...... ..++. -+++.++. |...+.|.+||..+.....+..++...
T Consensus 286 i~i~d~~~~~~~~~~~~~~~v----------------~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~ 349 (401)
T 4aez_A 286 IHFWNAATGARVNTVDAGSQV----------------TSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHD 349 (401)
T ss_dssp EEEEETTTCCEEEEEECSSCE----------------EEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCS
T ss_pred EEEEECCCCCEEEEEeCCCcE----------------EEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCC
Confidence 889999876543221111110 11222 24555555 556788999999888777665433222
Q ss_pred cCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCcee
Q 043540 373 SSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKL 419 (437)
Q Consensus 373 ~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~ 419 (437)
... ...++ .-++++++.||.+ ..+.+|.........+.
T Consensus 350 ~~v--~~~~~-s~dg~~l~s~~~d------g~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 350 TRV--LYSAL-SPDGRILSTAASD------ENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp SCC--CEEEE-CTTSSEEEEECTT------SEEEEEECCC-------
T ss_pred CCE--EEEEE-CCCCCEEEEEeCC------CcEEEEECCCCcccccc
Confidence 111 12222 2356667777654 24778877655544443
No 97
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=96.31 E-value=0.13 Score=52.09 Aligned_cols=237 Identities=13% Similarity=0.060 Sum_probs=115.5
Q ss_pred EEEEEe-cCceEEEeccCCCCeeeCCCCCCccccccCCceeEEe-CCEEEEEcCccCCceEEEEEC--CCCceecCCCCC
Q 043540 141 WVYFSC-KLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAV-GTELLVFGKEVHGNAIYRYNL--LTNTWSTGMTMN 216 (437)
Q Consensus 141 ~l~~~~-~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~v~~yd~--~t~~W~~~~~~~ 216 (437)
.+|+.. ....+..+|..+++-... ++.....+. ..+.- +..||+.+.. +.+.+||+ .+.+- +..++
T Consensus 150 ~~~vs~~~d~~V~v~D~~t~~~~~~--i~~g~~~~~---v~~spdg~~l~v~~~d---~~V~v~D~~~~t~~~--~~~i~ 219 (543)
T 1nir_A 150 LFSVTLRDAGQIALVDGDSKKIVKV--IDTGYAVHI---SRMSASGRYLLVIGRD---ARIDMIDLWAKEPTK--VAEIK 219 (543)
T ss_dssp EEEEEEGGGTEEEEEETTTCCEEEE--EECSTTEEE---EEECTTSCEEEEEETT---SEEEEEETTSSSCEE--EEEEE
T ss_pred EEEEEEcCCCeEEEEECCCceEEEE--EecCcccce---EEECCCCCEEEEECCC---CeEEEEECcCCCCcE--EEEEe
Confidence 444443 346788899988765321 111111111 11222 4567776533 78999999 55542 22222
Q ss_pred CCccceeeEEE-----CC-EEEEEeccCCCCCCCceEEEEECCCCcEEe-cCC--CCc------CCcCeeEEEE---CCE
Q 043540 217 TPRCLFGSASL-----GE-IAILAGGCDPRGKLLKSAELYNSITGTWMP-ISS--MHK------ARKMCSGVFM---DGK 278 (437)
Q Consensus 217 ~~r~~~~~~~~-----~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~--~~~------~r~~~~~~~~---~g~ 278 (437)
....-..++.- ++ .+|+.... ...+.++|..+.+-.. ++. +.. +......+.. ++.
T Consensus 220 ~g~~p~~va~sp~~~~dg~~l~v~~~~------~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~ 293 (543)
T 1nir_A 220 IGIEARSVESSKFKGYEDRYTIAGAYW------PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPE 293 (543)
T ss_dssp CCSEEEEEEECCSTTCTTTEEEEEEEE------SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSE
T ss_pred cCCCcceEEeCCCcCCCCCEEEEEEcc------CCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCE
Confidence 22222233332 34 55555322 2667889988776322 221 100 1112222332 345
Q ss_pred EEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEE-ECCE-EEEEeCCCCeEEEEe
Q 043540 279 FYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV-VNNE-LYAADHEKEEVRKFD 356 (437)
Q Consensus 279 lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-ly~~gg~~~~v~~yd 356 (437)
+|+.... ...+..+|..+.+-..+..++....- +.++. -+|+ +|+.....+.|.++|
T Consensus 294 ~~vs~~~-------~g~i~vvd~~~~~~l~~~~i~~~~~~--------------~~~~~spdg~~l~va~~~~~~v~v~D 352 (543)
T 1nir_A 294 FIVNVKE-------TGKVLLVNYKDIDNLTVTSIGAAPFL--------------HDGGWDSSHRYFMTAANNSNKVAVID 352 (543)
T ss_dssp EEEEETT-------TTEEEEEECTTSSSCEEEEEECCSSC--------------CCEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred EEEEECC-------CCeEEEEEecCCCcceeEEeccCcCc--------------cCceECCCCCEEEEEecCCCeEEEEE
Confidence 5554332 24688899876532111111111111 22232 2555 566655577899999
Q ss_pred CCCCcEEEc---cCCCCcccCCCcccEEEEEe-CCEEEEEcCCCCCCCCeeEEEeeecCCCC---CCceecCccC
Q 043540 357 KGRKLWRTL---GRLPEQASSMNGWGLAFRAC-GDQLIVIGGPRDSGGGIVELNGWVPDEGP---PHWKLLARQP 424 (437)
Q Consensus 357 ~~~~~W~~v---~~lp~~~~~~~~~~~a~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~d~~~---~~W~~l~~~p 424 (437)
.++++-... +..|.+. .+..+..- ++.+|+.+... ...+.+|..++.. ..|+.+..++
T Consensus 353 ~~tg~l~~~i~~g~~ph~g-----~g~~~~~p~~g~~~~s~~~~-----d~~V~v~d~~~~~~~~~~~~~v~~l~ 417 (543)
T 1nir_A 353 SKDRRLSALVDVGKTPHPG-----RGANFVHPKYGPVWSTSHLG-----DGSISLIGTDPKNHPQYAWKKVAELQ 417 (543)
T ss_dssp TTTTEEEEEEECSSSBCCT-----TCEEEEETTTEEEEEEEBSS-----SSEEEEEECCTTTCTTTBTSEEEEEE
T ss_pred CCCCeEEEeeccCCCCCCC-----CCcccCCCCCccEEEeccCC-----CceEEEEEeCCCCCchhcCeEEEEEE
Confidence 999865432 2233322 24444322 36888876422 1246778776532 2488765443
No 98
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=96.29 E-value=0.32 Score=47.05 Aligned_cols=227 Identities=9% Similarity=-0.062 Sum_probs=113.0
Q ss_pred ceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcC-ccCCceEEEEECCCCceecCCCCCCCccceeeEEE
Q 043540 149 KEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGK-EVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL 227 (437)
Q Consensus 149 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG-~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 227 (437)
..+..+|.....-..+..-..... ....+-+++.+++++ ......++++|+.+++...+...+. ......+
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~~~v~-----~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~---~~~~~~~ 230 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSPQPLM-----SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR---HNGAPAF 230 (415)
T ss_dssp EEEEEEETTSCSCEEEEEESSCEE-----EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSS---CEEEEEE
T ss_pred ceEEEEcCCCCCCEEEeCCCCcce-----eeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCC---cccCEEE
Confidence 467788876544333321111100 011222444444443 2233589999999988776543322 1222222
Q ss_pred --CC-EEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECC
Q 043540 228 --GE-IAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLE 302 (437)
Q Consensus 228 --~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~ 302 (437)
++ +|++.+..++ ...++++|..+++...+.... .....+.. ||+..++++.. .....++.+|+.
T Consensus 231 spdg~~la~~~~~~g----~~~i~~~d~~~~~~~~l~~~~---~~~~~~~~spdg~~l~~~s~~----~g~~~i~~~d~~ 299 (415)
T 2hqs_A 231 SPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDGR---SNNTEPTWFPDSQNLAFTSDQ----AGRPQVYKVNIN 299 (415)
T ss_dssp CTTSSEEEEEECTTS----SCEEEEEETTTCCEEECCCCS---SCEEEEEECTTSSEEEEEECT----TSSCEEEEEETT
T ss_pred cCCCCEEEEEEecCC----CceEEEEECCCCCEEeCcCCC---CcccceEECCCCCEEEEEECC----CCCcEEEEEECC
Confidence 44 4555554332 257999999998877664432 12222333 66644444322 112368889998
Q ss_pred CCceEecCCCCCcccCCCCcccccccCCCCCEEE-EECCEEEEEeC-C--CCeEEEEeCCCCcEEEccCCCCcccCCCcc
Q 043540 303 TGKWTQITDMFPARIGSDGVSVISAAGEAPPLLA-VVNNELYAADH-E--KEEVRKFDKGRKLWRTLGRLPEQASSMNGW 378 (437)
Q Consensus 303 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~gg-~--~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~ 378 (437)
+++-..+..... .. ..++ .-+|+.++++. . ...|+++|..+.+...+..-. .. .
T Consensus 300 ~~~~~~l~~~~~--~~--------------~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~-~~-----~ 357 (415)
T 2hqs_A 300 GGAPQRITWEGS--QN--------------QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF-LD-----E 357 (415)
T ss_dssp SSCCEECCCSSS--EE--------------EEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS-SC-----E
T ss_pred CCCEEEEecCCC--cc--------------cCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC-Cc-----C
Confidence 876554432110 00 1111 12555444432 2 357999999998887665322 11 1
Q ss_pred cEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCceecCc
Q 043540 379 GLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKLLAR 422 (437)
Q Consensus 379 ~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~ 422 (437)
..++ .-+++.+++++.. ++... +|.+|........+..
T Consensus 358 ~~~~-spdg~~l~~~s~~---~~~~~--l~~~d~~g~~~~~l~~ 395 (415)
T 2hqs_A 358 TPSL-APNGTMVIYSSSQ---GMGSV--LNLVSTDGRFKARLPA 395 (415)
T ss_dssp EEEE-CTTSSEEEEEEEE---TTEEE--EEEEETTSCCEEECCC
T ss_pred CeEE-cCCCCEEEEEEcC---CCccE--EEEEECCCCcEEEeeC
Confidence 2332 2345555555433 22333 4444555555555543
No 99
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.29 E-value=0.27 Score=46.99 Aligned_cols=187 Identities=12% Similarity=0.091 Sum_probs=97.2
Q ss_pred EEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccc
Q 043540 142 VYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCL 221 (437)
Q Consensus 142 l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~ 221 (437)
++.......+..||..+++..............+ ....-++.+++.|+. ...+.+||..+++.... +......
T Consensus 106 l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~---v~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~--~~~~~~~ 178 (401)
T 4aez_A 106 VVAVALERNVYVWNADSGSVSALAETDESTYVAS---VKWSHDGSFLSVGLG--NGLVDIYDVESQTKLRT--MAGHQAR 178 (401)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEECCTTCCEEE---EEECTTSSEEEEEET--TSCEEEEETTTCCEEEE--ECCCSSC
T ss_pred EEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEE---EEECCCCCEEEEECC--CCeEEEEECcCCeEEEE--ecCCCCc
Confidence 3344455678899998887655433321111111 001125556666643 34688899887654322 1111222
Q ss_pred eeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEE
Q 043540 222 FGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMY 299 (437)
Q Consensus 222 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~y 299 (437)
..+...++.+++.|+.+ ..+.+||..+..-. +..+.........+.+ ++++++.|+.+ ..+..|
T Consensus 179 v~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-------~~v~iw 244 (401)
T 4aez_A 179 VGCLSWNRHVLSSGSRS------GAIHHHDVRIANHQ-IGTLQGHSSEVCGLAWRSDGLQLASGGND-------NVVQIW 244 (401)
T ss_dssp EEEEEEETTEEEEEETT------SEEEEEETTSSSCE-EEEEECCSSCEEEEEECTTSSEEEEEETT-------SCEEEE
T ss_pred eEEEEECCCEEEEEcCC------CCEEEEecccCcce-eeEEcCCCCCeeEEEEcCCCCEEEEEeCC-------CeEEEc
Confidence 33344466777777754 56888998743211 1111111122223333 67778887765 258899
Q ss_pred ECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE--CCEEEEEeC--CCCeEEEEeCCCCcEEE
Q 043540 300 DLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV--NNELYAADH--EKEEVRKFDKGRKLWRT 364 (437)
Q Consensus 300 d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ly~~gg--~~~~v~~yd~~~~~W~~ 364 (437)
|+.+.+-...-. ..... ...++.. +..+++.|+ ..+.|.+||..+.+-..
T Consensus 245 d~~~~~~~~~~~--~~~~~-------------v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~ 298 (401)
T 4aez_A 245 DARSSIPKFTKT--NHNAA-------------VKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVN 298 (401)
T ss_dssp ETTCSSEEEEEC--CCSSC-------------CCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEE
T ss_pred cCCCCCccEEec--CCcce-------------EEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEE
Confidence 998754322111 00000 0223333 346777764 57789999998776443
No 100
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=96.26 E-value=0.15 Score=47.30 Aligned_cols=149 Identities=17% Similarity=0.130 Sum_probs=71.6
Q ss_pred EEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeC-CEEEEEcCccCCceEEEEECCCCceecCCCCCC-----
Q 043540 144 FSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVG-TELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNT----- 217 (437)
Q Consensus 144 ~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~-~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~----- 217 (437)
.......+..+|+.+++....-..+...... ...+.-+ ..+|+.+. ....+++||+.+++-...-..+.
T Consensus 16 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~---~~~~s~dg~~~~v~~~--~~~~i~~~d~~t~~~~~~~~~~~~~~~~ 90 (349)
T 1jmx_B 16 VTNYPNNLHVVDVASDTVYKSCVMPDKFGPG---TAMMAPDNRTAYVLNN--HYGDIYGIDLDTCKNTFHANLSSVPGEV 90 (349)
T ss_dssp EEETTTEEEEEETTTTEEEEEEECSSCCSSC---EEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEESCCSTTEE
T ss_pred EeCCCCeEEEEECCCCcEEEEEecCCCCCCc---eeEECCCCCEEEEEeC--CCCcEEEEeCCCCcEEEEEEcccccccc
Confidence 3345677899999887654322222200000 1112223 35777653 23579999998876543222211
Q ss_pred CccceeeEEE-CC-EEEEEecc-----CCCCCCCceEEEEECCCCcEEe-cCCCCcCCcCeeEEE-ECCEEEEEecccCC
Q 043540 218 PRCLFGSASL-GE-IAILAGGC-----DPRGKLLKSAELYNSITGTWMP-ISSMHKARKMCSGVF-MDGKFYVIGGIGEG 288 (437)
Q Consensus 218 ~r~~~~~~~~-~~-~iyv~GG~-----~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~r~~~~~~~-~~g~lyv~GG~~~~ 288 (437)
...-...+.- ++ .+|+.+.. +........+.+||..+++-.. +.....++...++++ -+|++|+.++
T Consensus 91 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~l~~~~~---- 166 (349)
T 1jmx_B 91 GRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGP---- 166 (349)
T ss_dssp EECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESS----
T ss_pred cccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCcEEEccC----
Confidence 1111222222 33 56665421 0000012578999988743211 111122222222333 3777777422
Q ss_pred CCccCCeEEEEECCCCceE
Q 043540 289 SSAMLTDVEMYDLETGKWT 307 (437)
Q Consensus 289 ~~~~~~~v~~yd~~~~~W~ 307 (437)
.+..||+.+++-.
T Consensus 167 ------~i~~~d~~~~~~~ 179 (349)
T 1jmx_B 167 ------DIYKMDVKTGKYT 179 (349)
T ss_dssp ------SEEEECTTTCCEE
T ss_pred ------cEEEEeCCCCcee
Confidence 2888898877643
No 101
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=96.26 E-value=0.14 Score=49.00 Aligned_cols=150 Identities=12% Similarity=0.125 Sum_probs=80.5
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceec-----CCCCCCCccceeeEEE--CC-EEEEEeccCCCCCCCceEEEEECCCC
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWST-----GMTMNTPRCLFGSASL--GE-IAILAGGCDPRGKLLKSAELYNSITG 255 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~-----~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~yd~~t~ 255 (437)
++.+++.|+. ...+.+||..++.... +..+.........+.+ ++ .+++.|+.+ ..+.+||..++
T Consensus 93 ~~~~l~s~s~--dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d------g~i~iwd~~~~ 164 (402)
T 2aq5_A 93 NDNVIASGSE--DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD------NVILVWDVGTG 164 (402)
T ss_dssp CTTEEEEEET--TSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT------SCEEEEETTTT
T ss_pred CCCEEEEEeC--CCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC------CEEEEEECCCC
Confidence 5666666653 3468889988875432 1111111111222222 22 577777754 45889999888
Q ss_pred cEEecCCCCcCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCCceEecC-CCCCcccCCCCcccccccCCCC
Q 043540 256 TWMPISSMHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQIT-DMFPARIGSDGVSVISAAGEAP 332 (437)
Q Consensus 256 ~W~~~~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~~~~~~~~~~~~~~~~~~~~ 332 (437)
+....-...........+.+ ++++++.|+.+ ..+..||+.+++-...- ........ .
T Consensus 165 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~-------------~ 224 (402)
T 2aq5_A 165 AAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD-------KRVRVIEPRKGTVVAEKDRPHEGTRP-------------V 224 (402)
T ss_dssp EEEEEECTTTCCSCEEEEEECTTSSCEEEEETT-------SEEEEEETTTTEEEEEEECSSCSSSC-------------C
T ss_pred CccEEEecCCCCCceEEEEECCCCCEEEEEecC-------CcEEEEeCCCCceeeeeccCCCCCcc-------------e
Confidence 65432110111122223333 67777777654 36899999886543221 11111101 0
Q ss_pred CEEEEECCEEEEEe---CCCCeEEEEeCCCCc
Q 043540 333 PLLAVVNNELYAAD---HEKEEVRKFDKGRKL 361 (437)
Q Consensus 333 ~~~~~~~~~ly~~g---g~~~~v~~yd~~~~~ 361 (437)
.....-++++++.| .....|.+||..+..
T Consensus 225 ~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 225 HAVFVSEGKILTTGFSRMSERQVALWDTKHLE 256 (402)
T ss_dssp EEEECSTTEEEEEEECTTCCEEEEEEETTBCS
T ss_pred EEEEcCCCcEEEEeccCCCCceEEEEcCcccc
Confidence 12222378888887 567789999998743
No 102
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=96.25 E-value=0.087 Score=48.84 Aligned_cols=241 Identities=11% Similarity=0.163 Sum_probs=115.3
Q ss_pred cEEEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEe----CCEEEEEcCccCCceEEEEECCCCceecCCCC
Q 043540 140 HWVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAV----GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTM 215 (437)
Q Consensus 140 ~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~----~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~ 215 (437)
.+|........+..||..+++...+..+...... . ..++. ++.+++.|+. ...+.+||..++.|..+..+
T Consensus 26 ~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~--V--~~v~~~~~~~~~~l~s~s~--D~~v~iWd~~~~~~~~~~~~ 99 (316)
T 3bg1_A 26 TRLATCSSDRSVKIFDVRNGGQILIADLRGHEGP--V--WQVAWAHPMYGNILASCSY--DRKVIIWREENGTWEKSHEH 99 (316)
T ss_dssp CEEEEEETTTEEEEEEEETTEEEEEEEEECCSSC--E--EEEEECCGGGSSCEEEEET--TSCEEEECCSSSCCCEEEEE
T ss_pred CEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCcc--E--EEEEeCCCCCCCEEEEEEC--CCEEEEEECCCCcceEEEEc
Confidence 3444444556777888776543222111110000 0 01222 1455555543 34688899988777544322
Q ss_pred CCCccceeeEEE--C--CEEEEEeccCCCCCCCceEEEEECCCC-cEEecCCCCcCCcCeeEEEE---------------
Q 043540 216 NTPRCLFGSASL--G--EIAILAGGCDPRGKLLKSAELYNSITG-TWMPISSMHKARKMCSGVFM--------------- 275 (437)
Q Consensus 216 ~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~~~~~~r~~~~~~~~--------------- 275 (437)
........++.+ + +.+++.|+.+ ..+.++|..++ .|.....+.........+..
T Consensus 100 ~~h~~~V~~v~~~p~~~g~~lasgs~D------~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~ 173 (316)
T 3bg1_A 100 AGHDSSVNSVCWAPHDYGLILACGSSD------GAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSG 173 (316)
T ss_dssp CCCSSCCCEEEECCTTTCSCEEEECSS------SCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCS
T ss_pred cCCCCceEEEEECCCCCCcEEEEEcCC------CCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccc
Confidence 211111222222 2 4566777654 45677787765 57543322211111111111
Q ss_pred ----CCEEEEEecccCCCCccCCeEEEEECCC-CceEecCCCCCcccCCCCcccccccCCCCCEEEEE--C----CEEEE
Q 043540 276 ----DGKFYVIGGIGEGSSAMLTDVEMYDLET-GKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV--N----NELYA 344 (437)
Q Consensus 276 ----~g~lyv~GG~~~~~~~~~~~v~~yd~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~ly~ 344 (437)
++++++.|+.+ ..+..||+.+ +.|..+..+...... -..+.+ + +.+++
T Consensus 174 ~~~~~~~~l~sgs~D-------~~v~lWd~~~~~~~~~~~~l~~h~~~--------------V~~v~~sp~~~~~~~~la 232 (316)
T 3bg1_A 174 QKPNYIKRFASGGCD-------NLIKLWKEEEDGQWKEEQKLEAHSDW--------------VRDVAWAPSIGLPTSTIA 232 (316)
T ss_dssp CCCCCCCBEECCBTT-------SBCCEEEECTTSCEEEEECCBCCSSC--------------EEEEECCCCSSCSCCEEE
T ss_pred cCccccceEEEecCC-------CeEEEEEeCCCCccceeeecccCCCc--------------eEEEEecCCCCCCCceEE
Confidence 13456666654 2466677763 457655443221111 011222 2 25667
Q ss_pred EeCCCCeEEEEeCCC---CcEEE--ccCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCcee
Q 043540 345 ADHEKEEVRKFDKGR---KLWRT--LGRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKL 419 (437)
Q Consensus 345 ~gg~~~~v~~yd~~~---~~W~~--v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~ 419 (437)
.++....|.+||..+ ..|.. +....... +..++ .-++++++.||.+ ..+.+|..+. ..+|..
T Consensus 233 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v-----~~v~~-sp~g~~las~~~D------~~v~lw~~~~-~g~~~~ 299 (316)
T 3bg1_A 233 SCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVV-----WHVSW-SITANILAVSGGD------NKVTLWKESV-DGQWVC 299 (316)
T ss_dssp EEETTCEEEEEECSSTTCCCCBCCEEEECSSCE-----EEEEE-CTTTCCEEEEESS------SCEEEEEECT-TSCEEE
T ss_pred EEcCCCeEEEEEccCccccchhhhhhhcCCCcE-----EEEEE-cCCCCEEEEEcCC------CeEEEEEECC-CCcEEE
Confidence 777778899998865 33321 11111110 12222 2346677777654 2367887764 368998
Q ss_pred cCccCCC
Q 043540 420 LARQPMC 426 (437)
Q Consensus 420 l~~~p~~ 426 (437)
+..+..+
T Consensus 300 ~~~~~~~ 306 (316)
T 3bg1_A 300 ISDVNKG 306 (316)
T ss_dssp EEECC--
T ss_pred eeeccCC
Confidence 8777654
No 103
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.24 E-value=0.36 Score=45.53 Aligned_cols=196 Identities=13% Similarity=0.042 Sum_probs=96.3
Q ss_pred CceEEEEECCCCceecCCCCCCCccceeeE-EE-CCE-EEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeE
Q 043540 196 GNAIYRYNLLTNTWSTGMTMNTPRCLFGSA-SL-GEI-AILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSG 272 (437)
Q Consensus 196 ~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~-~~-~~~-iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~ 272 (437)
...++++|+.+++.+.+..- ........ .- ++. |+++.. +........++++|..++.++.+.. ..+......
T Consensus 167 ~~~l~~~d~~~g~~~~~~~~--~~~~~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~ 242 (396)
T 3c5m_A 167 TCRLIKVDIETGELEVIHQD--TAWLGHPIYRPFDDSTVGFCHE-GPHDLVDARMWLVNEDGSNVRKIKE-HAEGESCTH 242 (396)
T ss_dssp CEEEEEEETTTCCEEEEEEE--SSCEEEEEEETTEEEEEEEEEC-SCSSSCSCCCEEEETTSCCCEESSC-CCTTEEEEE
T ss_pred cceEEEEECCCCcEEeeccC--CcccccceECCCCCCEEEEEec-CCCCCCCceEEEEECCCCceeEeec-cCCCccccc
Confidence 35789999988877665421 11111222 22 243 544432 2211122578999998888777754 211111222
Q ss_pred EEE--CCE-EEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE-CCEEEEEeC-
Q 043540 273 VFM--DGK-FYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV-NNELYAADH- 347 (437)
Q Consensus 273 ~~~--~g~-lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ly~~gg- 347 (437)
..+ +|+ |++..... ......++.+|+.+++...+...+. . .....- +|+++++.+
T Consensus 243 ~~~spdg~~l~~~~~~~---~~~~~~l~~~d~~~g~~~~l~~~~~---~--------------~~~~s~~dg~~l~~~~~ 302 (396)
T 3c5m_A 243 EFWIPDGSAMAYVSYFK---GQTDRVIYKANPETLENEEVMVMPP---C--------------SHLMSNFDGSLMVGDGC 302 (396)
T ss_dssp EEECTTSSCEEEEEEET---TTCCEEEEEECTTTCCEEEEEECCS---E--------------EEEEECSSSSEEEEEEC
T ss_pred eEECCCCCEEEEEecCC---CCccceEEEEECCCCCeEEeeeCCC---C--------------CCCccCCCCceEEEecC
Confidence 222 565 44443221 1112348999999887766643321 1 112223 666665532
Q ss_pred ---------------CCCeEEEEeCCCCcEEEccCCCCcc------cCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEE
Q 043540 348 ---------------EKEEVRKFDKGRKLWRTLGRLPEQA------SSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELN 406 (437)
Q Consensus 348 ---------------~~~~v~~yd~~~~~W~~v~~lp~~~------~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~ 406 (437)
....|+.+|+.+++...+...+... ........++..-+..|++..... + ...
T Consensus 303 ~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~----~--~~~ 376 (396)
T 3c5m_A 303 DAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFE----G--VPA 376 (396)
T ss_dssp CC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT----S--SCE
T ss_pred CcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCC----C--Cce
Confidence 2367999999888766554322210 000001223323344666554322 1 135
Q ss_pred eeecCCCCCCceecC
Q 043540 407 GWVPDEGPPHWKLLA 421 (437)
Q Consensus 407 ~~~~d~~~~~W~~l~ 421 (437)
+|.+|..+..++++.
T Consensus 377 l~~~~~~~~~~~~~~ 391 (396)
T 3c5m_A 377 IYIADVPESYKHLEH 391 (396)
T ss_dssp EEEEECCTTCC----
T ss_pred EEEEEEccccccccc
Confidence 777777777776653
No 104
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=96.23 E-value=0.19 Score=47.72 Aligned_cols=186 Identities=8% Similarity=-0.038 Sum_probs=88.7
Q ss_pred cEEEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCc
Q 043540 140 HWVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPR 219 (437)
Q Consensus 140 ~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r 219 (437)
.++++......+..||.....-..+.....+.. + ....-++..++.++. ...+.+||..+++....-......
T Consensus 121 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~--~---~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~ 193 (425)
T 1r5m_A 121 NSIVTGVENGELRLWNKTGALLNVLNFHRAPIV--S---VKWNKDGTHIISMDV--ENVTILWNVISGTVMQHFELKETG 193 (425)
T ss_dssp SEEEEEETTSCEEEEETTSCEEEEECCCCSCEE--E---EEECTTSSEEEEEET--TCCEEEEETTTTEEEEEECCC---
T ss_pred CEEEEEeCCCeEEEEeCCCCeeeeccCCCccEE--E---EEECCCCCEEEEEec--CCeEEEEECCCCcEEEEeeccccC
Confidence 345554455667778844333333322111110 0 001123444444432 346888998877654321111111
Q ss_pred --------------cceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcC-eeEEEE-CCEEEEEe
Q 043540 220 --------------CLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKM-CSGVFM-DGKFYVIG 283 (437)
Q Consensus 220 --------------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~-~~~~~~-~g~lyv~G 283 (437)
....++...+..+++|+.+ ..+.+||..+++-.. .+...... ..+++. ++++++.|
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~i~~~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~ 265 (425)
T 1r5m_A 194 GSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK------GAIFVYQITEKTPTG--KLIGHHGPISVLEFNDTNKLLLSA 265 (425)
T ss_dssp ------------CCCBSCCEEEETTEEEEECGG------GCEEEEETTCSSCSE--EECCCSSCEEEEEEETTTTEEEEE
T ss_pred ccceeeccccCCcceeeEEEEcCCCEEEEEcCC------CeEEEEEcCCCceee--eeccCCCceEEEEECCCCCEEEEE
Confidence 0223333334446666643 568899988764211 11111112 222333 66677776
Q ss_pred cccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE-CCEEEEEeCCCCeEEEEeCCCCcE
Q 043540 284 GIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV-NNELYAADHEKEEVRKFDKGRKLW 362 (437)
Q Consensus 284 G~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ly~~gg~~~~v~~yd~~~~~W 362 (437)
+.+ ..+..||+.+.+-...-. ..... ...++.. ++ +++.++..+.|.+||..+.+-
T Consensus 266 ~~d-------~~i~i~d~~~~~~~~~~~--~~~~~-------------i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~ 322 (425)
T 1r5m_A 266 SDD-------GTLRIWHGGNGNSQNCFY--GHSQS-------------IVSASWVGDD-KVISCSMDGSVRLWSLKQNTL 322 (425)
T ss_dssp ETT-------SCEEEECSSSBSCSEEEC--CCSSC-------------EEEEEEETTT-EEEEEETTSEEEEEETTTTEE
T ss_pred cCC-------CEEEEEECCCCccceEec--CCCcc-------------EEEEEECCCC-EEEEEeCCCcEEEEECCCCcE
Confidence 654 248889887654221111 00000 0123333 45 666677778999999987664
Q ss_pred E
Q 043540 363 R 363 (437)
Q Consensus 363 ~ 363 (437)
.
T Consensus 323 ~ 323 (425)
T 1r5m_A 323 L 323 (425)
T ss_dssp E
T ss_pred e
Confidence 3
No 105
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=96.17 E-value=0.47 Score=44.23 Aligned_cols=134 Identities=15% Similarity=0.154 Sum_probs=73.1
Q ss_pred ceEEEEECCCCceecCCCCCCCccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEE
Q 043540 197 NAIYRYNLLTNTWSTGMTMNTPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVF 274 (437)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~ 274 (437)
..+.+||..+++-... +........++.+ ++.+++.|+.+ ..+.+||..++.-... +.........+.
T Consensus 164 ~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~sg~~d------~~v~~wd~~~~~~~~~--~~~h~~~v~~v~ 233 (340)
T 1got_B 164 TTCALWDIETGQQTTT--FTGHTGDVMSLSLAPDTRLFVSGACD------ASAKLWDVREGMCRQT--FTGHESDINAIC 233 (340)
T ss_dssp SCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTCSEEEE--ECCCSSCEEEEE
T ss_pred CcEEEEECCCCcEEEE--EcCCCCceEEEEECCCCCEEEEEeCC------CcEEEEECCCCeeEEE--EcCCcCCEEEEE
Confidence 4688899887754321 1111111122222 56777787754 4678899887653221 111112222233
Q ss_pred E--CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEE--ECCEEEEEeCCCC
Q 043540 275 M--DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV--VNNELYAADHEKE 350 (437)
Q Consensus 275 ~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ly~~gg~~~ 350 (437)
+ ++++++.|+.+ ..+..||+.+++-...-........ -..+. -++++++.|+...
T Consensus 234 ~~p~~~~l~s~s~d-------~~v~iwd~~~~~~~~~~~~~~~~~~--------------v~~~~~s~~g~~l~~g~~d~ 292 (340)
T 1got_B 234 FFPNGNAFATGSDD-------ATCRLFDLRADQELMTYSHDNIICG--------------ITSVSFSKSGRLLLAGYDDF 292 (340)
T ss_dssp ECTTSSEEEEEETT-------SCEEEEETTTTEEEEEECCTTCCSC--------------EEEEEECTTSSEEEEEETTS
T ss_pred EcCCCCEEEEEcCC-------CcEEEEECCCCcEEEEEccCCcccc--------------eEEEEECCCCCEEEEECCCC
Confidence 3 67788887765 3488899887653221111111011 11122 2678888888888
Q ss_pred eEEEEeCCCCc
Q 043540 351 EVRKFDKGRKL 361 (437)
Q Consensus 351 ~v~~yd~~~~~ 361 (437)
.|.+||..+..
T Consensus 293 ~i~vwd~~~~~ 303 (340)
T 1got_B 293 NCNVWDALKAD 303 (340)
T ss_dssp EEEEEETTTCC
T ss_pred eEEEEEcccCc
Confidence 99999987654
No 106
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=96.17 E-value=0.11 Score=48.41 Aligned_cols=196 Identities=12% Similarity=0.008 Sum_probs=100.7
Q ss_pred cEEEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEe-CCEEEEEcCc---------------cCCceEEEEE
Q 043540 140 HWVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAV-GTELLVFGKE---------------VHGNAIYRYN 203 (437)
Q Consensus 140 ~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~lyv~GG~---------------~~~~~v~~yd 203 (437)
..+|+......+..||+.+++...+................+.- ++.||+.-.. .....+++||
T Consensus 92 g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 92 NQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp TEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred CcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEe
Confidence 34555544455788898876554443211111111111111223 5788886321 1235699999
Q ss_pred CCCCceecCC-CCCCCccceeeEEE-C-CEEEEEeccCCCCCCCceEEEEECCCC---cEEecCCCCcCCcCeeEEEE--
Q 043540 204 LLTNTWSTGM-TMNTPRCLFGSASL-G-EIAILAGGCDPRGKLLKSAELYNSITG---TWMPISSMHKARKMCSGVFM-- 275 (437)
Q Consensus 204 ~~t~~W~~~~-~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~yd~~t~---~W~~~~~~~~~r~~~~~~~~-- 275 (437)
+.+++.+.+. .+..| .+.+.- + +.|||.-.. ...+.+|+..+. +.+.+..++. ...+.+
T Consensus 172 ~~~~~~~~~~~~~~~p---~gia~~~dg~~lyv~d~~------~~~I~~~~~~~~~~~~~~~~~~~~g----P~gi~~d~ 238 (322)
T 2fp8_A 172 PSTKETTLLLKELHVP---GGAEVSADSSFVLVAEFL------SHQIVKYWLEGPKKGTAEVLVKIPN----PGNIKRNA 238 (322)
T ss_dssp TTTTEEEEEEEEESCC---CEEEECTTSSEEEEEEGG------GTEEEEEESSSTTTTCEEEEEECSS----EEEEEECT
T ss_pred CCCCEEEEeccCCccC---cceEECCCCCEEEEEeCC------CCeEEEEECCCCcCCccceEEeCCC----CCCeEECC
Confidence 9887765432 11111 223333 3 358887432 267899998752 3443332221 333344
Q ss_pred CCEEEEEecccCCCC---ccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeE
Q 043540 276 DGKFYVIGGIGEGSS---AMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEV 352 (437)
Q Consensus 276 ~g~lyv~GG~~~~~~---~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v 352 (437)
+|+|||......... .....+.+||+....-..+.. +.+... ..+..++..+++||+.+...+.|
T Consensus 239 ~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~-~~g~~~-----------~~~~~~~~~~g~L~v~~~~~~~i 306 (322)
T 2fp8_A 239 DGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPL-PPPFAG-----------EHFEQIQEHDGLLYIGTLFHGSV 306 (322)
T ss_dssp TSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEEC-CTTTTT-----------SCCCEEEEETTEEEEECSSCSEE
T ss_pred CCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEEC-CCCCcc-----------ccceEEEEeCCEEEEeecCCCce
Confidence 578998754310000 012358899987544444432 221100 01134556789999998778899
Q ss_pred EEEeCCCC
Q 043540 353 RKFDKGRK 360 (437)
Q Consensus 353 ~~yd~~~~ 360 (437)
.+|++..+
T Consensus 307 ~~~~~~~~ 314 (322)
T 2fp8_A 307 GILVYDKK 314 (322)
T ss_dssp EEEEC---
T ss_pred EEEecccc
Confidence 99998654
No 107
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.17 E-value=0.002 Score=58.94 Aligned_cols=46 Identities=20% Similarity=0.196 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHhhccCccchhhHHHHhHHHHHhhcCcchHHhhhh
Q 043540 89 IPELGRDITINCLLRCSRSDYGAIASLNRAFRSLIQSGELYRLRRE 134 (437)
Q Consensus 89 ~~~LP~dl~~~~L~rlP~~~~~~~~~V~k~w~sli~s~~~y~~~~~ 134 (437)
|..||+|++..||+.|+.++++++..|||+|+.++.++.+....-.
T Consensus 5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~ 50 (312)
T 3l2o_B 5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLL 50 (312)
T ss_dssp HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHH
T ss_pred hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHh
Confidence 4579999999999999999999999999999999999998865544
No 108
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.16 E-value=0.99 Score=47.69 Aligned_cols=210 Identities=10% Similarity=0.057 Sum_probs=112.9
Q ss_pred ccEEEEEecCceEEEeccCCCCeeeCCCC-CCccccccCCceeEE--eCCEEEEEcCccCCceEEEEECCCC----ceec
Q 043540 139 EHWVYFSCKLKEWEAFDPIHHRWMHLPPM-NASDCFMCADKESLA--VGTELLVFGKEVHGNAIYRYNLLTN----TWST 211 (437)
Q Consensus 139 ~~~l~~~~~~~~~~~yDp~~~~W~~l~~~-p~~~~~~~~~~~~~~--~~~~lyv~GG~~~~~~v~~yd~~t~----~W~~ 211 (437)
.+++++. ....+..++.....+..+... ..+. .++. .++.||+.-. ....|+++++... ....
T Consensus 395 ~p~Ll~a-n~~~Ir~i~l~~~~~~~l~~~~~~~~-------gl~~d~~~~~lY~sD~--~~~~I~~~~l~g~~~~~~~~~ 464 (791)
T 3m0c_C 395 IAYLFFT-NRHEVRKMTLDRSEYTSLIPNLRNVV-------ALDTEVASNRIYWSDL--SQRMICSTQLDRAHGVSSYDT 464 (791)
T ss_dssp CCEEEEE-CBSSEEEECTTSCCCEEEECSCSSEE-------EEEEETTTTEEEEEET--TTTEEEEEEC--------CEE
T ss_pred ccccccc-cccceeEeeccCCcceeeecCCCceE-------EEeecccCCeeEEeec--cceeEEEEeccCCCCCcceeE
Confidence 3455543 345677777776666554321 1110 1112 2678888742 2356888887542 2222
Q ss_pred -CC-CCCCCccceeeEE--ECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE---CCEEEEEec
Q 043540 212 -GM-TMNTPRCLFGSAS--LGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM---DGKFYVIGG 284 (437)
Q Consensus 212 -~~-~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~---~g~lyv~GG 284 (437)
+. .+..| .++++ .+++||+.-.. ...|+++++....-+.+..- ......++++ +|.||+.--
T Consensus 465 vi~~~l~~P---~GLAvD~~~~~LY~tD~~------~~~I~v~~ldG~~~~~l~~~--~l~~P~gIaVDp~~g~LYwtD~ 533 (791)
T 3m0c_C 465 VISRDIQAP---DGLAVDWIHSNIYWTDSV------LGTVSVADTKGVKRKTLFRE--NGSKPRAIVVDPVHGFMYWTDW 533 (791)
T ss_dssp EECSSCSCC---CEEEEETTTTEEEEEETT------TTEEEEEETTSSSEEEEEEC--TTCCEEEEEEETTTTEEEEEEC
T ss_pred EEecCCCCc---ceeeeeecCCcEEEEecC------CCeEEEEeCCCCeEEEEEeC--CCCCcceEEEecCCCCEEEecC
Confidence 22 22222 23444 36799998532 36899999987665554321 1112334444 589999841
Q ss_pred ccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE--CCEEEEEeCCCCeEEEEeCCCCcE
Q 043540 285 IGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV--NNELYAADHEKEEVRKFDKGRKLW 362 (437)
Q Consensus 285 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ly~~gg~~~~v~~yd~~~~~W 362 (437)
.. ...|+++++....-+.+..- .. .++.++++- +++||+.+.....|+++|+....=
T Consensus 534 g~------~~~I~~~~~dG~~~~~lv~~--~l-------------~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~ 592 (791)
T 3m0c_C 534 GT------PAKIKKGGLNGVDIYSLVTE--NI-------------QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR 592 (791)
T ss_dssp SS------SCEEEEEETTSCCEEEEECS--SC-------------SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CC------CCeEEEEecCCCceEEEEeC--CC-------------CCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce
Confidence 11 24688888876544333211 00 111345544 789999998888999999976543
Q ss_pred EEccCCCCcccCCCcccEEEEEeCCEEEEEcC
Q 043540 363 RTLGRLPEQASSMNGWGLAFRACGDQLIVIGG 394 (437)
Q Consensus 363 ~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG 394 (437)
+.+..-..... ...++.+.+++||+.-.
T Consensus 593 ~~v~~~~~~l~----~P~glav~~~~lYwtD~ 620 (791)
T 3m0c_C 593 KTILEDEKRLA----HPFSLAVFEDKVFWTDI 620 (791)
T ss_dssp EEEEECTTTTS----SEEEEEEETTEEEEEET
T ss_pred EEEecCCCccC----CCCEEEEeCCEEEEEEC
Confidence 33322111111 12445567889999853
No 109
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.14 E-value=1 Score=43.36 Aligned_cols=209 Identities=10% Similarity=0.058 Sum_probs=114.0
Q ss_pred ccEEEEEecCceEEEeccCCCCeeeCCC-CCCccccccCCceeEE--eCCEEEEEcCccCCceEEEEECCCCc----eec
Q 043540 139 EHWVYFSCKLKEWEAFDPIHHRWMHLPP-MNASDCFMCADKESLA--VGTELLVFGKEVHGNAIYRYNLLTNT----WST 211 (437)
Q Consensus 139 ~~~l~~~~~~~~~~~yDp~~~~W~~l~~-~p~~~~~~~~~~~~~~--~~~~lyv~GG~~~~~~v~~yd~~t~~----W~~ 211 (437)
++++++.. ..++..+|+....+..+.. +..+. .+.. .++.||+.- .....++++++.... ...
T Consensus 83 ~~~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~-------~l~~d~~~~~lywsD--~~~~~I~~~~~~g~~~~~~~~~ 152 (400)
T 3p5b_L 83 IAYLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVV-------ALDTEVASNRIYWSD--LSQRMICSTQLDRAHGVSSYDT 152 (400)
T ss_dssp SCEEEEEE-TTEEEEECTTSCSCEEEECSCSCEE-------EEEEETTTTEEEEEE--TTTTEEEEEEC------CCCEE
T ss_pred cceeEEec-cceeEEEccCCcceeEeccccCcce-------EEeeeeccCceEEEe--cCCCeEEEEEcccCCCCCcceE
Confidence 46666654 4778888988877765422 11111 1111 257898874 234578888886421 222
Q ss_pred C-C-CCCCCccceeeEE--ECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE---CCEEEEEec
Q 043540 212 G-M-TMNTPRCLFGSAS--LGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM---DGKFYVIGG 284 (437)
Q Consensus 212 ~-~-~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~---~g~lyv~GG 284 (437)
+ . .+. .-.+.++ .++.||++-.. ...++++|+....-+.+..- ......++.+ +|.||+.--
T Consensus 153 ~~~~~~~---~p~glavD~~~~~lY~~d~~------~~~I~~~~~~g~~~~~l~~~--~~~~P~~iavdp~~g~ly~td~ 221 (400)
T 3p5b_L 153 VISRDIQ---APDGLAVDWIHSNIYWTDSV------LGTVSVADTKGVKRKTLFRE--NGSKPRAIVVDPVHGFMYWTDW 221 (400)
T ss_dssp EECSSCS---CEEEEEEETTTTEEEEEETT------TTEEEEECTTTCSEEEEEEC--SSCCEEEEEEETTTTEEEEEEC
T ss_pred EEeCCCC---CcccEEEEecCCceEEEECC------CCeEEEEeCCCCceEEEEeC--CCCCcceEEEecccCeEEEEeC
Confidence 2 1 121 1224444 37899998542 36789999987665544321 1112233333 689998742
Q ss_pred ccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE--CCEEEEEeCCCCeEEEEeCCCCcE
Q 043540 285 IGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV--NNELYAADHEKEEVRKFDKGRKLW 362 (437)
Q Consensus 285 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ly~~gg~~~~v~~yd~~~~~W 362 (437)
.. ...++++++....=+.+..- .. ..+.++++- +++||+.+.....|+++|.....-
T Consensus 222 ~~------~~~I~~~~~dG~~~~~~~~~--~l-------------~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~ 280 (400)
T 3p5b_L 222 GT------PAKIKKGGLNGVDIYSLVTE--NI-------------QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR 280 (400)
T ss_dssp SS------SCCEEEEETTSCSCEEEECS--SC-------------SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC
T ss_pred CC------CCEEEEEeCCCCccEEEEEC--CC-------------CceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc
Confidence 11 13588888875433322110 00 111345554 789999998888999999876544
Q ss_pred EEccCCCCcccCCCcccEEEEEeCCEEEEEc
Q 043540 363 RTLGRLPEQASSMNGWGLAFRACGDQLIVIG 393 (437)
Q Consensus 363 ~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~G 393 (437)
+.+...+.... ...++++.++.||+.-
T Consensus 281 ~~~~~~~~~l~----~P~gl~v~~~~lywtd 307 (400)
T 3p5b_L 281 KTILEDEKRLA----HPFSLAVFEDKVFWTD 307 (400)
T ss_dssp EEEEECSSTTS----SEEEEEEETTEEEEEE
T ss_pred EEEEeCCCCCC----CCEEEEEeCCEEEEec
Confidence 44332111111 1234455789999984
No 110
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=96.13 E-value=0.41 Score=44.52 Aligned_cols=185 Identities=11% Similarity=0.048 Sum_probs=93.3
Q ss_pred cCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCceecCCCCCC--Cccceee
Q 043540 147 KLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNT--PRCLFGS 224 (437)
Q Consensus 147 ~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~--~r~~~~~ 224 (437)
....++.||+.+++...+. .+... .+ ....-++.+++.. ...+++||+.+++.+.+...+. +......
T Consensus 69 ~~~~i~~~d~~~~~~~~~~-~~~~v--~~---i~~~~dg~l~v~~----~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~ 138 (326)
T 2ghs_A 69 LERELHELHLASGRKTVHA-LPFMG--SA---LAKISDSKQLIAS----DDGLFLRDTATGVLTLHAELESDLPGNRSND 138 (326)
T ss_dssp GGTEEEEEETTTTEEEEEE-CSSCE--EE---EEEEETTEEEEEE----TTEEEEEETTTCCEEEEECSSTTCTTEEEEE
T ss_pred CCCEEEEEECCCCcEEEEE-CCCcc--eE---EEEeCCCeEEEEE----CCCEEEEECCCCcEEEEeeCCCCCCCCCCCC
Confidence 4467889999887654432 12111 11 1133467777754 2359999999988876543321 1111222
Q ss_pred EEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE-CC-EEEEEecccCCCCccCCeEEEEE
Q 043540 225 ASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM-DG-KFYVIGGIGEGSSAMLTDVEMYD 300 (437)
Q Consensus 225 ~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~g-~lyv~GG~~~~~~~~~~~v~~yd 300 (437)
..+ ++++|+.............+++|| +++.+.+.. ......+.++. ++ .||+..... ..+++||
T Consensus 139 i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~--~~~~~~~i~~s~dg~~lyv~~~~~-------~~I~~~d 207 (326)
T 2ghs_A 139 GRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA--DISIPNSICFSPDGTTGYFVDTKV-------NRLMRVP 207 (326)
T ss_dssp EEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE--EESSEEEEEECTTSCEEEEEETTT-------CEEEEEE
T ss_pred EEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC--CCcccCCeEEcCCCCEEEEEECCC-------CEEEEEE
Confidence 222 567776432211112236788898 566554421 00111122222 55 577764322 4688898
Q ss_pred CC--CC-ceE---ecCCCCCcccCCCCcccccccCCCCCEEEE-ECCEEEEEeCCCCeEEEEeCCCCcEEEc
Q 043540 301 LE--TG-KWT---QITDMFPARIGSDGVSVISAAGEAPPLLAV-VNNELYAADHEKEEVRKFDKGRKLWRTL 365 (437)
Q Consensus 301 ~~--~~-~W~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~~~v~~yd~~~~~W~~v 365 (437)
.. ++ +.. .+..+.... . .+..++. -+|.||+.....+.|.+||+..+.-..+
T Consensus 208 ~~~~~Gl~~~~~~~~~~~~~~~-~------------~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~~~~~i 266 (326)
T 2ghs_A 208 LDARTGLPTGKAEVFIDSTGIK-G------------GMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARY 266 (326)
T ss_dssp BCTTTCCBSSCCEEEEECTTSS-S------------EEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEE
T ss_pred cccccCCcccCceEEEECCCCC-C------------CCCeeEECCCCCEEEEEeCCCEEEEECCCCCEEEEE
Confidence 75 44 211 011111000 0 0012333 2678988865567899999965444444
No 111
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=96.13 E-value=0.24 Score=46.85 Aligned_cols=143 Identities=8% Similarity=0.013 Sum_probs=78.4
Q ss_pred EEEEEcCccCCceEEEEECCCCceecCCCCC-CCccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCC
Q 043540 186 ELLVFGKEVHGNAIYRYNLLTNTWSTGMTMN-TPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISS 262 (437)
Q Consensus 186 ~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 262 (437)
.+++.|+. ...+.+||..+++....-... ....-.+++.. ++.+++.|+.+ ..+.++|..+.....+..
T Consensus 87 ~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~ 158 (383)
T 3ei3_B 87 TTVAVGSK--GGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR------GATTLRDFSGSVIQVFAK 158 (383)
T ss_dssp TEEEEEEB--TSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT------TEEEEEETTSCEEEEEEC
T ss_pred CEEEEEcC--CCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC------CEEEEEECCCCceEEEec
Confidence 34555543 346888999887765443321 22222233333 34666776643 568899998776665543
Q ss_pred CCcCCcCeeE-EE-ECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE-C
Q 043540 263 MHKARKMCSG-VF-MDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV-N 339 (437)
Q Consensus 263 ~~~~r~~~~~-~~-~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 339 (437)
.......... .+ -++++++.|+.+ ..+..||+....-..+....... ..++.. +
T Consensus 159 ~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~i~d~~~~~~~~~~~h~~~v----------------~~~~~~~~ 215 (383)
T 3ei3_B 159 TDSWDYWYCCVDVSVSRQMLATGDST-------GRLLLLGLDGHEIFKEKLHKAKV----------------THAEFNPR 215 (383)
T ss_dssp CCCSSCCEEEEEEETTTTEEEEEETT-------SEEEEEETTSCEEEEEECSSSCE----------------EEEEECSS
T ss_pred cCCCCCCeEEEEECCCCCEEEEECCC-------CCEEEEECCCCEEEEeccCCCcE----------------EEEEECCC
Confidence 3321122222 22 267777777654 36889998544333332111100 112222 3
Q ss_pred CE-EEEEeCCCCeEEEEeCCC
Q 043540 340 NE-LYAADHEKEEVRKFDKGR 359 (437)
Q Consensus 340 ~~-ly~~gg~~~~v~~yd~~~ 359 (437)
+. +++.|+....|.+||..+
T Consensus 216 ~~~~l~s~~~d~~i~iwd~~~ 236 (383)
T 3ei3_B 216 CDWLMATSSVDATVKLWDLRN 236 (383)
T ss_dssp CTTEEEEEETTSEEEEEEGGG
T ss_pred CCCEEEEEeCCCEEEEEeCCC
Confidence 44 777777778899999986
No 112
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=96.13 E-value=0.44 Score=45.85 Aligned_cols=199 Identities=13% Similarity=0.077 Sum_probs=91.4
Q ss_pred cEEEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCc
Q 043540 140 HWVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPR 219 (437)
Q Consensus 140 ~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r 219 (437)
.++........+..||..+.+-... +..... ........-++.+++.|+.. ..+.+||..+.+-. ..+....
T Consensus 121 ~~l~s~s~Dg~i~vwd~~~~~~~~~--l~~h~~--~V~~v~~~~~~~~l~sgs~D--~~i~iwd~~~~~~~--~~~~~h~ 192 (410)
T 1vyh_C 121 SVMVSASEDATIKVWDYETGDFERT--LKGHTD--SVQDISFDHSGKLLASCSAD--MTIKLWDFQGFECI--RTMHGHD 192 (410)
T ss_dssp SEEEEEESSSCEEEEETTTCCCCEE--ECCCSS--CEEEEEECTTSSEEEEEETT--SCCCEEETTSSCEE--ECCCCCS
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEE--EeccCC--cEEEEEEcCCCCEEEEEeCC--CeEEEEeCCCCcee--EEEcCCC
Confidence 3444444556778888877653221 110000 00000112245666666543 35677887664422 1222111
Q ss_pred cceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE--CCEEEEEecccCCCCccCCe
Q 043540 220 CLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTD 295 (437)
Q Consensus 220 ~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~ 295 (437)
....++.+ ++..++.|+.+ ..+.+||..++.-... +.........+.. ++++++.|+.+ ..
T Consensus 193 ~~V~~v~~~p~~~~l~s~s~D------~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~g~~l~s~s~D-------~~ 257 (410)
T 1vyh_C 193 HNVSSVSIMPNGDHIVSASRD------KTIKMWEVQTGYCVKT--FTGHREWVRMVRPNQDGTLIASCSND-------QT 257 (410)
T ss_dssp SCEEEEEECSSSSEEEEEETT------SEEEEEETTTCCEEEE--EECCSSCEEEEEECTTSSEEEEEETT-------SC
T ss_pred CCEEEEEEeCCCCEEEEEeCC------CeEEEEECCCCcEEEE--EeCCCccEEEEEECCCCCEEEEEcCC-------Ce
Confidence 12222223 45666777754 5688999988764221 1111222222333 67777777765 34
Q ss_pred EEEEECCCCceEec-CCCCCcccC----CCCc-ccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCc
Q 043540 296 VEMYDLETGKWTQI-TDMFPARIG----SDGV-SVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKL 361 (437)
Q Consensus 296 v~~yd~~~~~W~~~-~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~ 361 (437)
+..||+.+..-... ......... .... ..+.............++.+++.|+..+.|.+||..+..
T Consensus 258 v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~ 329 (410)
T 1vyh_C 258 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 329 (410)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred EEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 78888877654321 110000000 0000 000000000000111236677778778889999998764
No 113
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=96.11 E-value=1.5 Score=44.83 Aligned_cols=119 Identities=16% Similarity=0.201 Sum_probs=71.0
Q ss_pred EEeCCEEEEEcCccCCceEEEEEC-CCC--ceecCCCCCC-----Ccc---ceeeEE--ECCE----EEEEeccCCCCCC
Q 043540 181 LAVGTELLVFGKEVHGNAIYRYNL-LTN--TWSTGMTMNT-----PRC---LFGSAS--LGEI----AILAGGCDPRGKL 243 (437)
Q Consensus 181 ~~~~~~lyv~GG~~~~~~v~~yd~-~t~--~W~~~~~~~~-----~r~---~~~~~~--~~~~----iyv~GG~~~~~~~ 243 (437)
+..++.||+.... ...++.+|. .|+ .|+.-...+. ..+ ..+.++ .+++ ||+...
T Consensus 59 ~v~~g~vyv~~~~--~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~------- 129 (599)
T 1w6s_A 59 LVVDGKMYIHTSF--PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL------- 129 (599)
T ss_dssp EEETTEEEEECST--TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT-------
T ss_pred EEECCEEEEEeCC--CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC-------
Confidence 6679999998631 356999999 776 4876443221 111 123444 5777 887632
Q ss_pred CceEEEEECCCCc--EEecC-CCCcC-CcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCc--eEecC
Q 043540 244 LKSAELYNSITGT--WMPIS-SMHKA-RKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGK--WTQIT 310 (437)
Q Consensus 244 ~~~~~~yd~~t~~--W~~~~-~~~~~-r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~~~ 310 (437)
...+..+|..|++ |+.-. ..... ....+-++.++++|+-.+.. .......+..||.++++ |+.-.
T Consensus 130 dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~--e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 130 DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGA--ELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCG--GGTCCCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEeccc--ccCCCCeEEEEECCCCcEEEEEcC
Confidence 2568899999887 87532 21111 11223456799988754311 11123469999999875 86543
No 114
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=96.09 E-value=0.09 Score=48.30 Aligned_cols=148 Identities=10% Similarity=-0.002 Sum_probs=79.4
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEE-CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCC
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL-GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISS 262 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 262 (437)
++.||+..- ....+++||+.++..+.... + ..-.+.+.. ++++|+..+ ..+.+||+++++++.+..
T Consensus 24 ~~~l~~~d~--~~~~i~~~d~~~~~~~~~~~-~--~~~~~i~~~~dG~l~v~~~--------~~l~~~d~~~g~~~~~~~ 90 (297)
T 3g4e_A 24 SNSLLFVDI--PAKKVCRWDSFTKQVQRVTM-D--APVSSVALRQSGGYVATIG--------TKFCALNWKEQSAVVLAT 90 (297)
T ss_dssp TTEEEEEET--TTTEEEEEETTTCCEEEEEC-S--SCEEEEEEBTTSSEEEEET--------TEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEEC--CCCEEEEEECCCCcEEEEeC-C--CceEEEEECCCCCEEEEEC--------CeEEEEECCCCcEEEEEe
Confidence 467777652 34578999999876544321 1 111222222 566666531 578999999999887654
Q ss_pred CCcC--CcCeeEEEE--CCEEEEEecccCCC-----CccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCC
Q 043540 263 MHKA--RKMCSGVFM--DGKFYVIGGIGEGS-----SAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPP 333 (437)
Q Consensus 263 ~~~~--r~~~~~~~~--~g~lyv~GG~~~~~-----~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (437)
.... ......+.+ +|+||+..-.. .. ......++.+|+.. +...+.. .... +.
T Consensus 91 ~~~~~~~~~~~di~~d~dG~l~~~~~~~-~~~~~~~~~~~~~l~~~d~~g-~~~~~~~---~~~~-------------pn 152 (297)
T 3g4e_A 91 VDNDKKNNRFNDGKVDPAGRYFAGTMAE-ETAPAVLERHQGALYSLFPDH-HVKKYFD---QVDI-------------SN 152 (297)
T ss_dssp CCTTCSSEEEEEEEECTTSCEEEEEEEC-CSBTTBCCTTCEEEEEECTTS-CEEEEEE---EESB-------------EE
T ss_pred cCCCCCCCCCCCEEECCCCCEEEecCCc-ccccccccCCCcEEEEEECCC-CEEEEee---cccc-------------cc
Confidence 3221 122222333 68888743211 10 01234688888753 3333211 0001 01
Q ss_pred EEEEE-CC-EEEEEeCCCCeEEEEeC--CCCcE
Q 043540 334 LLAVV-NN-ELYAADHEKEEVRKFDK--GRKLW 362 (437)
Q Consensus 334 ~~~~~-~~-~ly~~gg~~~~v~~yd~--~~~~W 362 (437)
.++.. ++ .||+.+...+.|++||. ++...
T Consensus 153 gi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~ 185 (297)
T 3g4e_A 153 GLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQI 185 (297)
T ss_dssp EEEECTTSCEEEEEEGGGTEEEEEEECTTTCCE
T ss_pred ceEEcCCCCEEEEecCCCCcEEEEeccCCCCcc
Confidence 23332 34 68998877788999985 45544
No 115
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=96.07 E-value=0.096 Score=55.21 Aligned_cols=192 Identities=8% Similarity=0.031 Sum_probs=103.6
Q ss_pred CEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEE--C--CEEEEEeccCCCCCCCceEEEEECCCCcEEec
Q 043540 185 TELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL--G--EIAILAGGCDPRGKLLKSAELYNSITGTWMPI 260 (437)
Q Consensus 185 ~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 260 (437)
+..++.|+. ...+.+||..++++..+..+........++.+ + +..++.|+.+ ..+.+||..+++|..+
T Consensus 21 g~~latg~~--dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D------g~I~vwd~~~~~~~~~ 92 (753)
T 3jro_A 21 GKRLATCSS--DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD------GKVLIWKEENGRWSQI 92 (753)
T ss_dssp SCCEEEEET--TTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT------SCEEEEEEETTEEEEE
T ss_pred CCeEEEEEC--CCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCC------CeEEEEECCCCccccc
Confidence 444444432 34678888877777665444332222333333 2 6677777754 4588899999988776
Q ss_pred CCCCcCCcCeeEEEE--C--CEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEE
Q 043540 261 SSMHKARKMCSGVFM--D--GKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLA 336 (437)
Q Consensus 261 ~~~~~~r~~~~~~~~--~--g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (437)
..+.........+.+ + +.+++.|+.+ ..+..||+.++.-.....+ ..|...+ ..++
T Consensus 93 ~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d-------g~I~vwdl~~~~~~~~~~~----~~~~~~v---------~~l~ 152 (753)
T 3jro_A 93 AVHAVHSASVNSVQWAPHEYGPLLLVASSD-------GKVSVVEFKENGTTSPIII----DAHAIGV---------NSAS 152 (753)
T ss_dssp EEECCCSSCEEEEEECCGGGCSEEEEEETT-------SEEEEEECCSSSCCCCEEE----ECCSSCE---------EEEE
T ss_pred ccccCCCCCeEEEEECCCCCCCEEEEEeCC-------CcEEEEEeecCCCcceeEe----ecCCCce---------EEEE
Confidence 655444334444433 3 6777777765 3588899877622111000 0000000 0111
Q ss_pred EE--------------CCEEEEEeCCCCeEEEEeCCCC--cEEEccCCCCcccCCCcccEEEEEe-C---CEEEEEcCCC
Q 043540 337 VV--------------NNELYAADHEKEEVRKFDKGRK--LWRTLGRLPEQASSMNGWGLAFRAC-G---DQLIVIGGPR 396 (437)
Q Consensus 337 ~~--------------~~~ly~~gg~~~~v~~yd~~~~--~W~~v~~lp~~~~~~~~~~~a~~~~-~---~~l~v~GG~~ 396 (437)
.. ++.+++.|+..+.|.+||..+. .+..+..+...... -.++... + +.+++.||.+
T Consensus 153 ~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~----V~~l~~sp~~~~~~~l~s~s~D 228 (753)
T 3jro_A 153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW----VRDVAWSPTVLLRSYLASVSQD 228 (753)
T ss_dssp ECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC----EEEEEECCCCSSSEEEEEEESS
T ss_pred ecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCc----EEEEEeccCCCCCCEEEEEecC
Confidence 11 4677777777788999988654 45544433322111 1222222 3 6788888765
Q ss_pred CCCCCeeEEEeeecCCCC
Q 043540 397 DSGGGIVELNGWVPDEGP 414 (437)
Q Consensus 397 ~~~~~~~~~~~~~~d~~~ 414 (437)
. .+.+|..+...
T Consensus 229 g------~I~iwd~~~~~ 240 (753)
T 3jro_A 229 R------TCIIWTQDNEQ 240 (753)
T ss_dssp S------CEEEEEESSSS
T ss_pred C------EEEEecCCCCC
Confidence 2 36777766543
No 116
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=96.05 E-value=0.26 Score=45.59 Aligned_cols=191 Identities=12% Similarity=0.021 Sum_probs=97.9
Q ss_pred cCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCcc--CCceEEEEECCCCceecC-CCCCCCcccee
Q 043540 147 KLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEV--HGNAIYRYNLLTNTWSTG-MTMNTPRCLFG 223 (437)
Q Consensus 147 ~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~--~~~~v~~yd~~t~~W~~~-~~~~~~r~~~~ 223 (437)
....+..||+.+++...+...+.. .... ....-++.+|+..... ....+++||+.++..+.+ ...........
T Consensus 64 ~~~~i~~~d~~~~~~~~~~~~~~~-~~~~---i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 139 (333)
T 2dg1_A 64 FEGNIFKINPETKEIKRPFVSHKA-NPAA---IKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDD 139 (333)
T ss_dssp TTCEEEEECTTTCCEEEEEECSSS-SEEE---EEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEE
T ss_pred CCCEEEEEeCCCCcEEEEeeCCCC-Ccce---EEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccc
Confidence 345688999998887654311111 1100 0122356788765321 124799999988876532 22111111112
Q ss_pred eEE-ECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE--CC-EEEEEecccCCCCccCCeEEEE
Q 043540 224 SAS-LGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM--DG-KFYVIGGIGEGSSAMLTDVEMY 299 (437)
Q Consensus 224 ~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~g-~lyv~GG~~~~~~~~~~~v~~y 299 (437)
.+. -++.+|+.............+++||+.+++.+.+..- ......+.+ +| .||+..... ..+.+|
T Consensus 140 i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~i~~~~dg~~l~v~~~~~-------~~i~~~ 209 (333)
T 2dg1_A 140 MVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN---ISVANGIALSTDEKVLWVTETTA-------NRLHRI 209 (333)
T ss_dssp EEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE---ESSEEEEEECTTSSEEEEEEGGG-------TEEEEE
T ss_pred eEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC---CCcccceEECCCCCEEEEEeCCC-------CeEEEE
Confidence 222 2577887643211111236789999988776654211 111222333 45 478765332 358889
Q ss_pred ECCCC--ceEecC-----CCCCcccCCCCcccccccCCCCCEEEE-ECCEEEEEeCCCCeEEEEeCCCCcEEEc
Q 043540 300 DLETG--KWTQIT-----DMFPARIGSDGVSVISAAGEAPPLLAV-VNNELYAADHEKEEVRKFDKGRKLWRTL 365 (437)
Q Consensus 300 d~~~~--~W~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~~~v~~yd~~~~~W~~v 365 (437)
|+.++ ....+. ..... .. +..++. -+|+||+.....+.|.+||+..+.-..+
T Consensus 210 d~~~~g~~~~~~~~~~~~~~~~~-~~-------------~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~~~~~~ 269 (333)
T 2dg1_A 210 ALEDDGVTIQPFGATIPYYFTGH-EG-------------PDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQI 269 (333)
T ss_dssp EECTTSSSEEEEEEEEEEECCSS-SE-------------EEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEE
T ss_pred EecCCCcCcccccceEEEecCCC-CC-------------CCceEECCCCCEEEEEcCCCEEEEECCCCCEEEEE
Confidence 98642 333221 11110 01 012333 3688998876567899999965544444
No 117
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.05 E-value=1 Score=42.47 Aligned_cols=205 Identities=14% Similarity=0.102 Sum_probs=116.7
Q ss_pred ccEEEEEecCceEEEeccCCCCeeeCCC-CCCccccccCCceeEE---eCCEEEEEcCccCCceEEEEECCCCceecCC-
Q 043540 139 EHWVYFSCKLKEWEAFDPIHHRWMHLPP-MNASDCFMCADKESLA---VGTELLVFGKEVHGNAIYRYNLLTNTWSTGM- 213 (437)
Q Consensus 139 ~~~l~~~~~~~~~~~yDp~~~~W~~l~~-~p~~~~~~~~~~~~~~---~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~- 213 (437)
++++++.. ...+..+|+.......+.. +..+. .++ .++.||+.- .....++++++.....+.+.
T Consensus 44 ~~~ll~~~-~~~I~~i~~~g~~~~~~~~~~~~~~--------~l~~d~~~~~ly~~D--~~~~~I~r~~~~g~~~~~~~~ 112 (349)
T 3v64_C 44 EPVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAI--------ALDFHHRRELVFWSD--VTLDRILRANLNGSNVEEVVS 112 (349)
T ss_dssp CCEEEEEC-BSCEEEECTTSCCEEEEECSCSCEE--------EEEEETTTTEEEEEE--TTTTEEEEEETTSCSCEEEEC
T ss_pred CceeEeec-ccceEEEeCCCCeeEEeecCCCceE--------EEEEeccccEEEEEe--ccCCceEEEecCCCCceEEEe
Confidence 56666643 4568888888777655422 11111 122 357888874 23467899998876554432
Q ss_pred -CCCCCccceeeEE--ECCEEEEEeccCCCCCCCceEEEEECCCCcEEecC--CCCcCCcCeeEEEE--CCEEEEEeccc
Q 043540 214 -TMNTPRCLFGSAS--LGEIAILAGGCDPRGKLLKSAELYNSITGTWMPIS--SMHKARKMCSGVFM--DGKFYVIGGIG 286 (437)
Q Consensus 214 -~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~--~~~~~r~~~~~~~~--~g~lyv~GG~~ 286 (437)
.+..| .+.++ .++.||+.-.. ...++++++....-+.+. .+..+ ...++- ++.||+..-..
T Consensus 113 ~~~~~p---~glavd~~~g~ly~~d~~------~~~I~~~~~dG~~~~~l~~~~l~~P---~~iavdp~~g~ly~td~~~ 180 (349)
T 3v64_C 113 TGLESP---GGLAVDWVHDKLYWTDSG------TSRIEVANLDGAHRKVLLWQSLEKP---RAIALHPMEGTIYWTDWGN 180 (349)
T ss_dssp SSCSCC---CEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEECTTCSCE---EEEEEETTTTEEEEEECSS
T ss_pred CCCCCc---cEEEEecCCCeEEEEcCC------CCeEEEEcCCCCceEEEEeCCCCCc---ceEEEecCcCeEEEeccCC
Confidence 22222 23444 37899998542 367899998765433332 22222 223333 68999884221
Q ss_pred CCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE--CCEEEEEeCCCCeEEEEeCCCCcEEE
Q 043540 287 EGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV--NNELYAADHEKEEVRKFDKGRKLWRT 364 (437)
Q Consensus 287 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ly~~gg~~~~v~~yd~~~~~W~~ 364 (437)
...++++|+....-+.+.. .... .+.++++- +++||+.+.....|+++|.....=+.
T Consensus 181 ------~~~I~r~~~dG~~~~~~~~--~~~~-------------~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~ 239 (349)
T 3v64_C 181 ------TPRIEASSMDGSGRRIIAD--THLF-------------WPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKA 239 (349)
T ss_dssp ------SCEEEEEETTSCSCEESCC--SSCS-------------CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ------CCEEEEEeCCCCCcEEEEE--CCCC-------------CcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEE
Confidence 3569999987644333321 0111 11345553 78999999888899999987643333
Q ss_pred ccCCCCcccCCCcccEEEEEeCCEEEEEc
Q 043540 365 LGRLPEQASSMNGWGLAFRACGDQLIVIG 393 (437)
Q Consensus 365 v~~lp~~~~~~~~~~~a~~~~~~~l~v~G 393 (437)
+...... +..|.+ +.++.||+.-
T Consensus 240 ~~~~~~~----~P~gia--v~~~~ly~td 262 (349)
T 3v64_C 240 VISQGLP----HPFAIT--VFEDSLYWTD 262 (349)
T ss_dssp EECSSCS----SEEEEE--EETTEEEEEE
T ss_pred EEeCCCC----CceEEE--EECCEEEEec
Confidence 3221111 113444 4788999985
No 118
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=96.02 E-value=0.25 Score=46.14 Aligned_cols=186 Identities=16% Similarity=0.182 Sum_probs=91.4
Q ss_pred cEEEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCce--ecCCCCCC
Q 043540 140 HWVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTW--STGMTMNT 217 (437)
Q Consensus 140 ~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W--~~~~~~~~ 217 (437)
.++........+..+|..+.+-...-+..... ..+ ....-++..++.|+. ...+.+||..+..- +....+..
T Consensus 68 ~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~-v~~---~~~s~~~~~l~s~~~--d~~v~iw~~~~~~~~~~~~~~~~~ 141 (340)
T 1got_B 68 RLLLSASQDGKLIIWDSYTTNKVHAIPLRSSW-VMT---CAYAPSGNYVACGGL--DNICSIYNLKTREGNVRVSRELAG 141 (340)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECSSSC-EEE---EEECTTSSEEEEEET--TCEEEEEETTTCSBSCEEEEEEEC
T ss_pred CEEEEEeCCCcEEEEECCCCCcceEeecCCcc-EEE---EEECCCCCEEEEEeC--CCeEEEEECccCCCcceeEEEecC
Confidence 34555555567788887765532211111100 000 011224555555543 35688888876431 11111111
Q ss_pred -CccceeeEE-ECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE--CCEEEEEecccCCCCccC
Q 043540 218 -PRCLFGSAS-LGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM--DGKFYVIGGIGEGSSAML 293 (437)
Q Consensus 218 -~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~ 293 (437)
...-..+.. -++. ++.|+.+ ..+.+||..+++-... +.........+.+ ++++++.|+.+
T Consensus 142 h~~~v~~~~~~~~~~-l~s~s~d------~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~sg~~d------- 205 (340)
T 1got_B 142 HTGYLSCCRFLDDNQ-IVTSSGD------TTCALWDIETGQQTTT--FTGHTGDVMSLSLAPDTRLFVSGACD------- 205 (340)
T ss_dssp CSSCEEEEEEEETTE-EEEEETT------SCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETT-------
T ss_pred CCccEEEEEECCCCc-EEEEECC------CcEEEEECCCCcEEEE--EcCCCCceEEEEECCCCCEEEEEeCC-------
Confidence 111112222 2455 4555543 5678899988764322 2211122223323 67788887765
Q ss_pred CeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEE-ECCEEEEEeCCCCeEEEEeCCCCcE
Q 043540 294 TDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV-VNNELYAADHEKEEVRKFDKGRKLW 362 (437)
Q Consensus 294 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~~~v~~yd~~~~~W 362 (437)
..+..||+.++.-...- .+|...+ ..++. -++.+++.|+..+.|.+||..+.+-
T Consensus 206 ~~v~~wd~~~~~~~~~~------~~h~~~v---------~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~ 260 (340)
T 1got_B 206 ASAKLWDVREGMCRQTF------TGHESDI---------NAICFFPNGNAFATGSDDATCRLFDLRADQE 260 (340)
T ss_dssp SCEEEEETTTCSEEEEE------CCCSSCE---------EEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred CcEEEEECCCCeeEEEE------cCCcCCE---------EEEEEcCCCCEEEEEcCCCcEEEEECCCCcE
Confidence 35888998876432211 1110000 11222 2677788888888899999987653
No 119
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=96.01 E-value=0.15 Score=46.68 Aligned_cols=186 Identities=12% Similarity=0.089 Sum_probs=92.0
Q ss_pred EEEEecCceEEEeccCCCCeeeC-CCCCCccccccCCceeEEeCCEEEEEcCcc-------------CCceEEEEECCCC
Q 043540 142 VYFSCKLKEWEAFDPIHHRWMHL-PPMNASDCFMCADKESLAVGTELLVFGKEV-------------HGNAIYRYNLLTN 207 (437)
Q Consensus 142 l~~~~~~~~~~~yDp~~~~W~~l-~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~-------------~~~~v~~yd~~t~ 207 (437)
+++......+..||+. ++...+ ................+.-++.+|+..... ....+++||+. +
T Consensus 85 l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g 162 (314)
T 1pjx_A 85 LFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G 162 (314)
T ss_dssp EEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S
T ss_pred EEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C
Confidence 4444434468889988 776655 322211111111111122357788765321 12578999986 5
Q ss_pred ceecCC-CCCCCccceeeEEE-----CC-EEEEEeccCCCCCCCceEEEEECC-CCcEEe---cCCCCcCC-cCeeEEEE
Q 043540 208 TWSTGM-TMNTPRCLFGSASL-----GE-IAILAGGCDPRGKLLKSAELYNSI-TGTWMP---ISSMHKAR-KMCSGVFM 275 (437)
Q Consensus 208 ~W~~~~-~~~~~r~~~~~~~~-----~~-~iyv~GG~~~~~~~~~~~~~yd~~-t~~W~~---~~~~~~~r-~~~~~~~~ 275 (437)
+...+. ....+ .+.+.. ++ .+|+.... ...+.+||.. +++... ...++... .....+.+
T Consensus 163 ~~~~~~~~~~~~---~~i~~~~~~d~dg~~l~v~~~~------~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~ 233 (314)
T 1pjx_A 163 QMIQVDTAFQFP---NGIAVRHMNDGRPYQLIVAETP------TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDF 233 (314)
T ss_dssp CEEEEEEEESSE---EEEEEEECTTSCEEEEEEEETT------TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEE
T ss_pred CEEEeccCCCCc---ceEEEecccCCCCCEEEEEECC------CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEE
Confidence 554432 11111 223333 23 57776432 2578888875 444321 11122111 11222333
Q ss_pred --CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEE-ECCE-EEEEeCCCCe
Q 043540 276 --DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV-VNNE-LYAADHEKEE 351 (437)
Q Consensus 276 --~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-ly~~gg~~~~ 351 (437)
+|.||+..... ..+.+||+.+++-...-..+.. . +..++. -+++ ||+.+...+.
T Consensus 234 d~~G~l~v~~~~~-------~~i~~~d~~~g~~~~~~~~~~~--~-------------~~~i~~~~dg~~l~v~~~~~~~ 291 (314)
T 1pjx_A 234 DEDNNLLVANWGS-------SHIEVFGPDGGQPKMRIRCPFE--K-------------PSNLHFKPQTKTIFVTEHENNA 291 (314)
T ss_dssp BTTCCEEEEEETT-------TEEEEECTTCBSCSEEEECSSS--C-------------EEEEEECTTSSEEEEEETTTTE
T ss_pred CCCCCEEEEEcCC-------CEEEEEcCCCCcEeEEEeCCCC--C-------------ceeEEECCCCCEEEEEeCCCCe
Confidence 68898874322 2588999985543211111111 1 012232 2455 8888766678
Q ss_pred EEEEeCCCC
Q 043540 352 VRKFDKGRK 360 (437)
Q Consensus 352 v~~yd~~~~ 360 (437)
|++|++...
T Consensus 292 l~~~~~~~~ 300 (314)
T 1pjx_A 292 VWKFEWQRN 300 (314)
T ss_dssp EEEEECSSC
T ss_pred EEEEeCCCC
Confidence 999998764
No 120
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=96.00 E-value=1.6 Score=44.55 Aligned_cols=209 Identities=13% Similarity=0.104 Sum_probs=108.0
Q ss_pred cEEEEEec-CceEEEecc-CCC--CeeeCCCCCCcc----ccccCCceeEE--eCCE----EEEEcCccCCceEEEEECC
Q 043540 140 HWVYFSCK-LKEWEAFDP-IHH--RWMHLPPMNASD----CFMCADKESLA--VGTE----LLVFGKEVHGNAIYRYNLL 205 (437)
Q Consensus 140 ~~l~~~~~-~~~~~~yDp-~~~--~W~~l~~~p~~~----~~~~~~~~~~~--~~~~----lyv~GG~~~~~~v~~yd~~ 205 (437)
..+|+... ...++++|. .+. .|+.-...+... +........+. .++. ||+... ...++.+|..
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~---dg~l~AlDa~ 139 (599)
T 1w6s_A 63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL---DGNVAALNAE 139 (599)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT---TSEEEEEETT
T ss_pred CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC---CCEEEEEECC
Confidence 34566555 467899999 776 587644333211 00001122344 5666 887642 3478999998
Q ss_pred CCc--eecCC-CCCCC-ccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCc--EEecCCCCcC-------------
Q 043540 206 TNT--WSTGM-TMNTP-RCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGT--WMPISSMHKA------------- 266 (437)
Q Consensus 206 t~~--W~~~~-~~~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~------------- 266 (437)
|++ |+.-. ..... ....+-++.+++||+..+..+. .....+..||.+|++ |+.-...+..
T Consensus 140 TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~-g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~ 218 (599)
T 1w6s_A 140 TGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAEL-GVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP 218 (599)
T ss_dssp TCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGG-TCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred CCCEEEeecCCCCCccceeecCCEEECCEEEEEeccccc-CCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccc
Confidence 875 77432 11100 1112335578888875432111 123678999999887 8754322110
Q ss_pred ---------------C---c----CeeEEE--ECCEEEEEeccc--------CCCCccCCeEEEEECCCCc--eEecCCC
Q 043540 267 ---------------R---K----MCSGVF--MDGKFYVIGGIG--------EGSSAMLTDVEMYDLETGK--WTQITDM 312 (437)
Q Consensus 267 ---------------r---~----~~~~~~--~~g~lyv~GG~~--------~~~~~~~~~v~~yd~~~~~--W~~~~~~ 312 (437)
. . ....++ -++.+|+-.|.. .+.......+.++|+++++ |+.-...
T Consensus 219 ~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~ 298 (599)
T 1w6s_A 219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP 298 (599)
T ss_dssp GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESST
T ss_pred cccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCC
Confidence 0 0 001122 367888865532 0112234689999999875 7644321
Q ss_pred CCcccCCCCcccccccCCCCCEEEE---ECC---EEEEEeCCCCeEEEEeCCCCc
Q 043540 313 FPARIGSDGVSVISAAGEAPPLLAV---VNN---ELYAADHEKEEVRKFDKGRKL 361 (437)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~ly~~gg~~~~v~~yd~~~~~ 361 (437)
...... .....+.++. .+| ++++.+.....++++|.++.+
T Consensus 299 ~d~wd~---------d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 344 (599)
T 1w6s_A 299 HDEWDY---------AGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA 344 (599)
T ss_dssp TCSSCC---------CCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred Cccccc---------cCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCC
Confidence 111110 0000133333 245 555655566678888877654
No 121
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=96.00 E-value=0.98 Score=41.86 Aligned_cols=177 Identities=14% Similarity=0.072 Sum_probs=90.4
Q ss_pred ceEEEEECCCCceecCCCCCCCccceeeEEE-CCEEEEEeccCCCCCCCceEEEEECCCC--cEEecCCC------CcCC
Q 043540 197 NAIYRYNLLTNTWSTGMTMNTPRCLFGSASL-GEIAILAGGCDPRGKLLKSAELYNSITG--TWMPISSM------HKAR 267 (437)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~------~~~r 267 (437)
..++++|+.+++.........-..-.++++- ++.+|+.... ...+.+||+... .-..+... ....
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~------~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~ 142 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVA------LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHF 142 (329)
T ss_dssp CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETT------TTEEEEECTTCSSCCSEEESBTTBCCCSTTCC
T ss_pred CcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECC------CCEEEEEeCCCCeEEEEEecccCCCCCCcccc
Confidence 3688999987765432110000111233332 5779988642 267899998765 22222211 1111
Q ss_pred cCeeEEEE---CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE-C-CEE
Q 043540 268 KMCSGVFM---DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV-N-NEL 342 (437)
Q Consensus 268 ~~~~~~~~---~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~l 342 (437)
.....+.+ +|.|||..++. ...+.+||+....-..+.............. ..+..+++. + +.|
T Consensus 143 ~~P~~ia~~~~~g~lyv~d~~~------~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~------~~p~gia~d~~~g~l 210 (329)
T 3fvz_A 143 CQPTDVAVEPSTGAVFVSDGYC------NSRIVQFSPSGKFVTQWGEESSGSSPRPGQF------SVPHSLALVPHLDQL 210 (329)
T ss_dssp SSEEEEEECTTTCCEEEEECSS------CCEEEEECTTSCEEEEECEECCSSSCCTTEE------SCEEEEEEETTTTEE
T ss_pred CCCcEEEEeCCCCeEEEEeCCC------CCeEEEEcCCCCEEEEeccCCCCCCCCCccc------CCCcEEEEECCCCEE
Confidence 12333333 68999997532 2468899965544444321111000000000 112345554 4 899
Q ss_pred EEEeCCCCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCC
Q 043540 343 YAADHEKEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGP 395 (437)
Q Consensus 343 y~~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~ 395 (437)
|+.+.....|.+||+.+.+....-..+.... ..++ ++...+.+|+..|.
T Consensus 211 ~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~--~~~~--~~~~pg~~~~~~g~ 259 (329)
T 3fvz_A 211 CVADRENGRIQCFKTDTKEFVREIKHASFGR--NVFA--ISYIPGFLFAVNGK 259 (329)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEECCTTTTT--CEEE--EEEETTEEEEEECC
T ss_pred EEEECCCCEEEEEECCCCcEEEEEeccccCC--Ccce--eeecCCEEEEeCCC
Confidence 9999888899999999776654332221111 1122 22334777777664
No 122
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=95.98 E-value=0.27 Score=45.58 Aligned_cols=147 Identities=12% Similarity=0.109 Sum_probs=78.0
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceec-CCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCC
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWST-GMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISS 262 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~-~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 262 (437)
.+.+++.|+. ...+.+||..+++-.. +..-+. ........-+++.++.|+.+ ..+.+||..+++-...
T Consensus 91 ~~~~l~s~s~--D~~i~lWd~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~g~~d------g~v~i~~~~~~~~~~~-- 159 (321)
T 3ow8_A 91 TLPIAASSSL--DAHIRLWDLENGKQIKSIDAGPV-DAWTLAFSPDSQYLATGTHV------GKVNIFGVESGKKEYS-- 159 (321)
T ss_dssp SSSEEEEEET--TSEEEEEETTTTEEEEEEECCTT-CCCCEEECTTSSEEEEECTT------SEEEEEETTTCSEEEE--
T ss_pred CCCEEEEEeC--CCcEEEEECCCCCEEEEEeCCCc-cEEEEEECCCCCEEEEEcCC------CcEEEEEcCCCceeEE--
Confidence 3444555532 3468888988765432 111111 11111112256666776643 5678899887653221
Q ss_pred CCcCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEE-EC
Q 043540 263 MHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV-VN 339 (437)
Q Consensus 263 ~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 339 (437)
+.........+.+ ++++.+.|+.+ ..+..||+.+++-... +...... ...++. -+
T Consensus 160 ~~~~~~~v~~~~~spdg~~lasg~~d-------g~i~iwd~~~~~~~~~--~~~h~~~-------------v~~l~~spd 217 (321)
T 3ow8_A 160 LDTRGKFILSIAYSPDGKYLASGAID-------GIINIFDIATGKLLHT--LEGHAMP-------------IRSLTFSPD 217 (321)
T ss_dssp EECSSSCEEEEEECTTSSEEEEEETT-------SCEEEEETTTTEEEEE--ECCCSSC-------------CCEEEECTT
T ss_pred ecCCCceEEEEEECCCCCEEEEEcCC-------CeEEEEECCCCcEEEE--EcccCCc-------------eeEEEEcCC
Confidence 1111112222222 67888887765 3488999988753221 1110000 012222 26
Q ss_pred CEEEEEeCCCCeEEEEeCCCCcEE
Q 043540 340 NELYAADHEKEEVRKFDKGRKLWR 363 (437)
Q Consensus 340 ~~ly~~gg~~~~v~~yd~~~~~W~ 363 (437)
+++++.|+....|.+||..+....
T Consensus 218 ~~~l~s~s~dg~i~iwd~~~~~~~ 241 (321)
T 3ow8_A 218 SQLLVTASDDGYIKIYDVQHANLA 241 (321)
T ss_dssp SCEEEEECTTSCEEEEETTTCCEE
T ss_pred CCEEEEEcCCCeEEEEECCCccee
Confidence 778888888888999999876644
No 123
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=95.98 E-value=0.32 Score=47.09 Aligned_cols=184 Identities=10% Similarity=0.025 Sum_probs=97.0
Q ss_pred eEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCE-EEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEE-
Q 043540 150 EWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTE-LLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL- 227 (437)
Q Consensus 150 ~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~-lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~- 227 (437)
.+..+|..+++...+...+.... + ....-+++ |++.+.......++++|+.+++.+.+..... ......+
T Consensus 204 ~i~~~d~~tg~~~~l~~~~~~~~--~---~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~---~~~~~~~s 275 (415)
T 2hqs_A 204 ALVIQTLANGAVRQVASFPRHNG--A---PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRS---NNTEPTWF 275 (415)
T ss_dssp EEEEEETTTCCEEEEECCSSCEE--E---EEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSS---CEEEEEEC
T ss_pred EEEEEECCCCcEEEeecCCCccc--C---EEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCC---cccceEEC
Confidence 67888888877665543322110 0 01222444 5544443445679999999988766643221 1222222
Q ss_pred -CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEE-ECCEEEEEecccCCCCccCCeEEEEECCCCc
Q 043540 228 -GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVF-MDGKFYVIGGIGEGSSAMLTDVEMYDLETGK 305 (437)
Q Consensus 228 -~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~ 305 (437)
+++.+++++... ....++++|..+++-+.+.... ......++ -+|+..++++.. . ....+..+|+.+++
T Consensus 276 pdg~~l~~~s~~~---g~~~i~~~d~~~~~~~~l~~~~--~~~~~~~~spdG~~l~~~~~~-~---g~~~i~~~d~~~~~ 346 (415)
T 2hqs_A 276 PDSQNLAFTSDQA---GRPQVYKVNINGGAPQRITWEG--SQNQDADVSSDGKFMVMVSSN-G---GQQHIAKQDLATGG 346 (415)
T ss_dssp TTSSEEEEEECTT---SSCEEEEEETTSSCCEECCCSS--SEEEEEEECTTSSEEEEEEEC-S---SCEEEEEEETTTCC
T ss_pred CCCCEEEEEECCC---CCcEEEEEECCCCCEEEEecCC--CcccCeEECCCCCEEEEEECc-C---CceEEEEEECCCCC
Confidence 454334433211 1257899999887755443211 11112222 266655554432 0 13468999999988
Q ss_pred eEecCCCCCcccCCCCcccccccCCCCCEEEE-ECCEEEEEeCCC---CeEEEEeCCCCcEEEccC
Q 043540 306 WTQITDMFPARIGSDGVSVISAAGEAPPLLAV-VNNELYAADHEK---EEVRKFDKGRKLWRTLGR 367 (437)
Q Consensus 306 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~---~~v~~yd~~~~~W~~v~~ 367 (437)
...+.... .. ..++. -+|+.++++... ..|+.+|...+....+..
T Consensus 347 ~~~l~~~~---~~--------------~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~ 395 (415)
T 2hqs_A 347 VQVLSSTF---LD--------------ETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPA 395 (415)
T ss_dssp EEECCCSS---SC--------------EEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCC
T ss_pred EEEecCCC---Cc--------------CCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeC
Confidence 87664321 11 11222 256655554322 279999988777666643
No 124
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=95.97 E-value=0.058 Score=50.95 Aligned_cols=150 Identities=14% Similarity=0.140 Sum_probs=76.0
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCc-EEec
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGT-WMPI 260 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~ 260 (437)
++.+++.|+. ...+.+||..++.|+.+..+........++.+ ++..++.|+.+ ..+.+||..++. |...
T Consensus 22 ~g~~l~~~~~--d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d------~~v~vwd~~~~~~~~~~ 93 (377)
T 3dwl_C 22 QRTEFVTTTA--TNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD------RNAYVYEKRPDGTWKQT 93 (377)
T ss_dssp SSSEEECCCS--SSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETT------SSEEEC------CCCCE
T ss_pred CCCEEEEecC--CCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCC------CeEEEEEcCCCCceeee
Confidence 4556666643 34577888888888776655433332333333 45666777654 457888988876 5433
Q ss_pred CCCCcCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCCc-eEecCCCCCcccCCCCcccccccCCCCCEEEE
Q 043540 261 SSMHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGK-WTQITDMFPARIGSDGVSVISAAGEAPPLLAV 337 (437)
Q Consensus 261 ~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (437)
..+.........+.+ ++++++.|+.+ ..+..||+.+++ |..+..+..+... .+ ..++.
T Consensus 94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~iwd~~~~~~~~~~~~~~~~h~~---~v---------~~~~~ 154 (377)
T 3dwl_C 94 LVLLRLNRAATFVRWSPNEDKFAVGSGA-------RVISVCYFEQENDWWVSKHLKRPLRS---TI---------LSLDW 154 (377)
T ss_dssp EECCCCSSCEEEEECCTTSSCCEEEESS-------SCEEECCC-----CCCCEEECSSCCS---CE---------EEEEE
T ss_pred eEecccCCceEEEEECCCCCEEEEEecC-------CeEEEEEECCcccceeeeEeecccCC---Ce---------EEEEE
Confidence 333222222233332 57777777654 247788887764 4333222221111 00 11222
Q ss_pred E-CCEEEEEeCCCCeEEEEeCCCC
Q 043540 338 V-NNELYAADHEKEEVRKFDKGRK 360 (437)
Q Consensus 338 ~-~~~ly~~gg~~~~v~~yd~~~~ 360 (437)
. ++++++.|+..+.|.+||..++
T Consensus 155 ~~~~~~l~~~~~d~~i~iwd~~~~ 178 (377)
T 3dwl_C 155 HPNNVLLAAGCADRKAYVLSAYVR 178 (377)
T ss_dssp CTTSSEEEEEESSSCEEEEEECCS
T ss_pred cCCCCEEEEEeCCCEEEEEEEEec
Confidence 2 5677777777778999998643
No 125
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=95.96 E-value=0.38 Score=44.16 Aligned_cols=103 Identities=18% Similarity=0.216 Sum_probs=55.2
Q ss_pred CEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCCce
Q 043540 229 EIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGKW 306 (437)
Q Consensus 229 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W 306 (437)
+.+++.|+.+ ..+.+||..+.+-... +........++.+ ++++++.|+.+ ..+..||+.+.+-
T Consensus 185 ~~~~~s~~~d------~~i~i~d~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~s~D-------g~i~iwd~~~~~~ 249 (340)
T 4aow_A 185 NPIIVSCGWD------KLVKVWNLANCKLKTN--HIGHTGYLNTVTVSPDGSLCASGGKD-------GQAMLWDLNEGKH 249 (340)
T ss_dssp SCEEEEEETT------SCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETT-------CEEEEEETTTTEE
T ss_pred CcEEEEEcCC------CEEEEEECCCCceeeE--ecCCCCcEEEEEECCCCCEEEEEeCC-------CeEEEEEeccCce
Confidence 3455666643 4578899888764332 1111122223333 67788887765 3588899877543
Q ss_pred EecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCcE
Q 043540 307 TQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKLW 362 (437)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~W 362 (437)
... +.....- ..++...+..++.++..+.|.+||.++..-
T Consensus 250 ~~~--~~~~~~v--------------~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~ 289 (340)
T 4aow_A 250 LYT--LDGGDII--------------NALCFSPNRYWLCAATGPSIKIWDLEGKII 289 (340)
T ss_dssp EEE--EECSSCE--------------EEEEECSSSSEEEEEETTEEEEEETTTTEE
T ss_pred eee--ecCCceE--------------EeeecCCCCceeeccCCCEEEEEECCCCeE
Confidence 221 1111000 122333344445555667889999887653
No 126
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=95.92 E-value=0.88 Score=40.65 Aligned_cols=185 Identities=8% Similarity=-0.044 Sum_probs=101.1
Q ss_pred cEEEEEe-cCceEEEeccCCCCeeeCCC--CCCccccccCCceeEE--eCCEEEEEcCccCCceEEEEECCCCceecCCC
Q 043540 140 HWVYFSC-KLKEWEAFDPIHHRWMHLPP--MNASDCFMCADKESLA--VGTELLVFGKEVHGNAIYRYNLLTNTWSTGMT 214 (437)
Q Consensus 140 ~~l~~~~-~~~~~~~yDp~~~~W~~l~~--~p~~~~~~~~~~~~~~--~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~ 214 (437)
..+|+.. ....+..||+....-..+.. +..|. .++. .++.||+... ..+.+.++++....-+.+..
T Consensus 48 ~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~-------~ia~d~~~~~lyv~d~--~~~~I~~~~~~g~~~~~~~~ 118 (267)
T 1npe_A 48 KVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPE-------GIALDHLGRTIFWTDS--QLDRIEVAKMDGTQRRVLFD 118 (267)
T ss_dssp TEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEE-------EEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEC
T ss_pred CEEEEEECCCCEEEEEecCCCCcEEEEECCCCCcc-------EEEEEecCCeEEEEEC--CCCEEEEEEcCCCCEEEEEE
Confidence 3455543 34568888887654332211 11111 1222 2678998753 24578899986543333221
Q ss_pred CCCCccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE---CCEEEEEecccCCC
Q 043540 215 MNTPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM---DGKFYVIGGIGEGS 289 (437)
Q Consensus 215 ~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~---~g~lyv~GG~~~~~ 289 (437)
... ..-..+++- ++.||+..... ....++++++....-+.+.... ........+ ++.||+.-..
T Consensus 119 ~~~-~~P~~i~vd~~~g~lyv~~~~~----~~~~I~~~~~dg~~~~~~~~~~--~~~P~gia~d~~~~~lyv~d~~---- 187 (267)
T 1npe_A 119 TGL-VNPRGIVTDPVRGNLYWTDWNR----DNPKIETSHMDGTNRRILAQDN--LGLPNGLTFDAFSSQLCWVDAG---- 187 (267)
T ss_dssp SSC-SSEEEEEEETTTTEEEEEECCS----SSCEEEEEETTSCCCEEEECTT--CSCEEEEEEETTTTEEEEEETT----
T ss_pred CCC-CCccEEEEeeCCCEEEEEECCC----CCcEEEEEecCCCCcEEEEECC--CCCCcEEEEcCCCCEEEEEECC----
Confidence 111 111233443 68999985321 1257888888654333332111 122233333 4789998543
Q ss_pred CccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCcEE
Q 043540 290 SAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKLWR 363 (437)
Q Consensus 290 ~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~W~ 363 (437)
.+.+.+||+....-..+.. .. ..+..++..++.||+.....+.|.++|+.+.+-.
T Consensus 188 ---~~~I~~~~~~g~~~~~~~~---~~-------------~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 188 ---THRAECLNPAQPGRRKVLE---GL-------------QYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEM 242 (267)
T ss_dssp ---TTEEEEEETTEEEEEEEEE---CC-------------CSEEEEEEETTEEEEEETTTTEEEEEETTTTEEE
T ss_pred ---CCEEEEEecCCCceEEEec---CC-------------CCceEEEEeCCEEEEEECCCCeEEEEeCCCCCce
Confidence 2468999997643222211 00 1113466678999999887889999999887654
No 127
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=95.91 E-value=0.2 Score=44.79 Aligned_cols=197 Identities=10% Similarity=0.031 Sum_probs=96.9
Q ss_pred CEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEE-ECCEEEEEeccCCCCCCCceEEEEECCC-CcEEecCC
Q 043540 185 TELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSAS-LGEIAILAGGCDPRGKLLKSAELYNSIT-GTWMPISS 262 (437)
Q Consensus 185 ~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t-~~W~~~~~ 262 (437)
+.+|..........++++|+.+++...+.... ....+.+. -+++.+++++ + ..+.++|..+ ++...+..
T Consensus 10 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~v~~~~~spdg~~l~~~~-~------~~i~~~d~~~~~~~~~~~~ 80 (297)
T 2ojh_A 10 TRLSTGPGGSMRSSIEIFNIRTRKMRVVWQTP--ELFEAPNWSPDGKYLLLNS-E------GLLYRLSLAGDPSPEKVDT 80 (297)
T ss_dssp --------CCCCEEEEEEETTTTEEEEEEEES--SCCEEEEECTTSSEEEEEE-T------TEEEEEESSSCCSCEECCC
T ss_pred eeEeecCCCCcceeEEEEeCCCCceeeeccCC--cceEeeEECCCCCEEEEEc-C------CeEEEEeCCCCCCceEecc
Confidence 44555444445578999999988876553321 11122222 2455555553 1 4789999998 87766654
Q ss_pred CCcCCc-CeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE-CC
Q 043540 263 MHKARK-MCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV-NN 340 (437)
Q Consensus 263 ~~~~r~-~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 340 (437)
...... ......-+|+.+++++.. ......++.+|..++.-..+..... . ..++.. ++
T Consensus 81 ~~~~~~~~~~~~spdg~~l~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~---~--------------~~~~~spdg 140 (297)
T 2ojh_A 81 GFATICNNDHGISPDGALYAISDKV---EFGKSAIYLLPSTGGTPRLMTKNLP---S--------------YWHGWSPDG 140 (297)
T ss_dssp TTCCCBCSCCEECTTSSEEEEEECT---TTSSCEEEEEETTCCCCEECCSSSS---E--------------EEEEECTTS
T ss_pred ccccccccceEECCCCCEEEEEEeC---CCCcceEEEEECCCCceEEeecCCC---c--------------cceEECCCC
Confidence 332122 222233366666665532 1124568889988776555543221 1 112222 44
Q ss_pred E-EEEEeCCCC--eEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCc
Q 043540 341 E-LYAADHEKE--EVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHW 417 (437)
Q Consensus 341 ~-ly~~gg~~~--~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W 417 (437)
+ |++.+.... .++.+|..+.....+...+.... ..++..-+..|++.+... + ...+|.++......
T Consensus 141 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~s~dg~~l~~~~~~~----~--~~~i~~~~~~~~~~ 209 (297)
T 2ojh_A 141 KSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRND-----GPDYSPDGRWIYFNSSRT----G--QMQIWRVRVDGSSV 209 (297)
T ss_dssp SEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEE-----EEEECTTSSEEEEEECTT----S--SCEEEEEETTSSCE
T ss_pred CEEEEEECCCCceEEEEEECCCCcceEcccCCCccc-----cceECCCCCEEEEEecCC----C--CccEEEECCCCCCc
Confidence 4 443443333 56777787777766654332211 222222233455554322 1 34677777555555
Q ss_pred eecC
Q 043540 418 KLLA 421 (437)
Q Consensus 418 ~~l~ 421 (437)
..+.
T Consensus 210 ~~~~ 213 (297)
T 2ojh_A 210 ERIT 213 (297)
T ss_dssp EECC
T ss_pred EEEe
Confidence 5543
No 128
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=95.84 E-value=0.88 Score=46.57 Aligned_cols=248 Identities=11% Similarity=-0.063 Sum_probs=119.9
Q ss_pred CceEEEeccC--C-CCeeeCCCCCCccccccCCceeEEeCCEEEEEcCc--------cCCceEEEEECCC------Ccee
Q 043540 148 LKEWEAFDPI--H-HRWMHLPPMNASDCFMCADKESLAVGTELLVFGKE--------VHGNAIYRYNLLT------NTWS 210 (437)
Q Consensus 148 ~~~~~~yDp~--~-~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~--------~~~~~v~~yd~~t------~~W~ 210 (437)
...++.+|.. . +.-..+...+.............+-+++.+++... .....++++|..+ +..+
T Consensus 101 ~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 180 (662)
T 3azo_A 101 DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR 180 (662)
T ss_dssp TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE
T ss_pred CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee
Confidence 3457777776 3 55566655331111000001112334543434322 1225799999988 6665
Q ss_pred cCC-CCCCCccceeeEEECCEEEEEeccCCCCC--CCceEEEEECC-CCcEEecCCCCcC-CcC-eeEEEE-CCEEEEEe
Q 043540 211 TGM-TMNTPRCLFGSASLGEIAILAGGCDPRGK--LLKSAELYNSI-TGTWMPISSMHKA-RKM-CSGVFM-DGKFYVIG 283 (437)
Q Consensus 211 ~~~-~~~~~r~~~~~~~~~~~iyv~GG~~~~~~--~~~~~~~yd~~-t~~W~~~~~~~~~-r~~-~~~~~~-~g~lyv~G 283 (437)
.+. .-. ........+-+++.+++...+.... ....++++|.. ++++.....+... ... ...+.. ||++|+.+
T Consensus 181 ~l~~~~~-~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~ 259 (662)
T 3azo_A 181 ELSDDAH-RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVAT 259 (662)
T ss_dssp ESSCSCS-SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEE
T ss_pred EEEecCC-CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEE
Confidence 554 211 1111112223554444434332111 12579999998 5733322222211 112 222222 78888776
Q ss_pred cccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE-CCEEEEEeCC-CCeEEEEeCCCCc
Q 043540 284 GIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV-NNELYAADHE-KEEVRKFDKGRKL 361 (437)
Q Consensus 284 G~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ly~~gg~-~~~v~~yd~~~~~ 361 (437)
..+ ....++.+|+.+++++.+......... |...-....++.. ++++++.+.. ...++.+|..++.
T Consensus 260 ~~~-----~~~~l~~~~~~~~~~~~l~~~~~~~~~-------p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 260 DRT-----GWWNLHRVDPATGAATQLCRREEEFAG-------PLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGE 327 (662)
T ss_dssp CTT-----SSCEEEEECTTTCCEEESSCCSSBSSC-------CCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTE
T ss_pred CCC-----CCeEEEEEECCCCceeecccccccccC-------ccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCc
Confidence 543 123699999989999887643222111 0000000123333 6777776544 3357777988887
Q ss_pred EEEccCCCCcccCCCcccEEE-EEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCceec
Q 043540 362 WRTLGRLPEQASSMNGWGLAF-RACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKLL 420 (437)
Q Consensus 362 W~~v~~lp~~~~~~~~~~~a~-~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~l 420 (437)
.+.+..- ... -..+ ...++.++++.+.. .....+|.+|..+.+.+.+
T Consensus 328 ~~~l~~~-~~~------~~~~~s~~~~~~~~~~~~~-----~~~~~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 328 LVDAAGP-WTE------WAATLTVSGTRAVGVAASP-----RTAYEVVELDTVTGRARTI 375 (662)
T ss_dssp EEECCSS-CCE------EEEEEEEETTEEEEEEEET-----TEEEEEEEEETTTCCEEEE
T ss_pred EEEecCC-CCe------EEEEEecCCCEEEEEEcCC-----CCCCEEEEEECCCCceEEe
Confidence 7766421 111 1122 34567777665422 1234566666666665555
No 129
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=95.83 E-value=0.57 Score=42.80 Aligned_cols=187 Identities=12% Similarity=0.097 Sum_probs=91.2
Q ss_pred cccEEEEEecCceEEEeccCCCCeee-CCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCceec-CCCC
Q 043540 138 IEHWVYFSCKLKEWEAFDPIHHRWMH-LPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTWST-GMTM 215 (437)
Q Consensus 138 ~~~~l~~~~~~~~~~~yDp~~~~W~~-l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~-~~~~ 215 (437)
..+++........+..+|..+++-.. +.....+. .......++.+++.|+. ...+.+||..+++-.. +..
T Consensus 24 ~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~s~s~--d~~i~vwd~~~~~~~~~~~~- 95 (304)
T 2ynn_A 24 TEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPV-----RAGKFIARKNWIIVGSD--DFRIRVFNYNTGEKVVDFEA- 95 (304)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCE-----EEEEEEGGGTEEEEEET--TSEEEEEETTTCCEEEEEEC-
T ss_pred CCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcE-----EEEEEeCCCCEEEEECC--CCEEEEEECCCCcEEEEEeC-
Confidence 34556655566778888887765322 11111110 00112234455555543 3468889988765321 111
Q ss_pred CCCccceeeEEE-CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE---CCEEEEEecccCCCCc
Q 043540 216 NTPRCLFGSASL-GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM---DGKFYVIGGIGEGSSA 291 (437)
Q Consensus 216 ~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~---~g~lyv~GG~~~~~~~ 291 (437)
....-.+++.. ++.+++.|+.+ ..+.++|..++. .....+.........+.+ ++.+++.|+.+
T Consensus 96 -h~~~v~~~~~~~~~~~l~sgs~D------~~v~lWd~~~~~-~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D----- 162 (304)
T 2ynn_A 96 -HPDYIRSIAVHPTKPYVLSGSDD------LTVKLWNWENNW-ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD----- 162 (304)
T ss_dssp -CSSCEEEEEECSSSSEEEEEETT------SCEEEEEGGGTT-EEEEEECCCCSCEEEEEECTTCTTEEEEEETT-----
T ss_pred -CCCcEEEEEEcCCCCEEEEECCC------CeEEEEECCCCc-chhhhhcccCCcEEEEEECCCCCCEEEEEeCC-----
Confidence 11111122222 45666777654 457788876652 111111111122233333 45677777765
Q ss_pred cCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE----CCEEEEEeCCCCeEEEEeCCCCcE
Q 043540 292 MLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV----NNELYAADHEKEEVRKFDKGRKLW 362 (437)
Q Consensus 292 ~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ly~~gg~~~~v~~yd~~~~~W 362 (437)
..+..||+.+..=... +...... ....+.+ ++.+++.|+..+.|.+||..+.+-
T Consensus 163 --~~v~iwd~~~~~~~~~--~~~~~~~-------------~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~ 220 (304)
T 2ynn_A 163 --RTVKVWSLGQSTPNFT--LTTGQER-------------GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC 220 (304)
T ss_dssp --SEEEEEETTCSSCSEE--EECCCTT-------------CEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEE
T ss_pred --CeEEEEECCCCCccce--eccCCcC-------------cEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcc
Confidence 3588899865421100 0000000 0111222 556777777788899999988653
No 130
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=95.78 E-value=2.2 Score=44.14 Aligned_cols=117 Identities=16% Similarity=0.171 Sum_probs=68.0
Q ss_pred cEEEEEecCceEEEeccCCC--CeeeCCCCCCcccc-cc---CCceeEEeCCEEEEEcCccCCceEEEEECCCCc--eec
Q 043540 140 HWVYFSCKLKEWEAFDPIHH--RWMHLPPMNASDCF-MC---ADKESLAVGTELLVFGKEVHGNAIYRYNLLTNT--WST 211 (437)
Q Consensus 140 ~~l~~~~~~~~~~~yDp~~~--~W~~l~~~p~~~~~-~~---~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~--W~~ 211 (437)
..+|+......+.++|..++ .|+.-...+..... .+ .....+..++.||+.. ....++.+|..|++ |+.
T Consensus 67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~---~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGT---LDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEEC---TTSEEEEEETTTCCEEEEE
T ss_pred CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEc---CCCEEEEEECCCCCEeeee
Confidence 44666666677899998876 48764433221110 00 1123355688888764 23579999998875 775
Q ss_pred CCCCCC--CccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCc--EEec
Q 043540 212 GMTMNT--PRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGT--WMPI 260 (437)
Q Consensus 212 ~~~~~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~ 260 (437)
-..-+. .....+-++.++.||+..+.... .....+..||..|++ |+.-
T Consensus 144 ~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~-~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEY-GVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp ECSCTTSSCBCCSCCEEETTEEEECCBCTTT-CCBCEEEEEETTTCCEEEEEE
T ss_pred ccCCCCCcceecCCCEEECCEEEEeCCCCCc-CCCCEEEEEECCCCcEEEEec
Confidence 332111 11222345678888875332111 134679999999887 8753
No 131
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=95.77 E-value=0.78 Score=43.47 Aligned_cols=192 Identities=9% Similarity=0.011 Sum_probs=93.4
Q ss_pred CEEEEEcCccCCceEEEEECCCCc------ee-cCCCCC-CCccceeeEEE-C-CEEEEEeccCCCCCCCceEEEEECCC
Q 043540 185 TELLVFGKEVHGNAIYRYNLLTNT------WS-TGMTMN-TPRCLFGSASL-G-EIAILAGGCDPRGKLLKSAELYNSIT 254 (437)
Q Consensus 185 ~~lyv~GG~~~~~~v~~yd~~t~~------W~-~~~~~~-~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~yd~~t 254 (437)
+.+++.|+. ...+.+||..++. -. .+.... ....-.+++.. + +.+++.|+.+ ..+.+||..+
T Consensus 126 ~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~v~iwd~~~ 197 (416)
T 2pm9_A 126 DNVLASGGN--NGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSS------NFASIWDLKA 197 (416)
T ss_dssp TTBEEEECS--SSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSS------SCEEEEETTT
T ss_pred CCEEEEEcC--CCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCC------CCEEEEECCC
Confidence 555666643 3468889988765 11 111111 11111222222 2 5677777654 4588999988
Q ss_pred CcEEecCCCCcC----CcCeeEEEE--CC-EEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccc
Q 043540 255 GTWMPISSMHKA----RKMCSGVFM--DG-KFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISA 327 (437)
Q Consensus 255 ~~W~~~~~~~~~----r~~~~~~~~--~g-~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ 327 (437)
++-...-..... ......+.+ ++ .+++.|+.+. ....+..||+.+..- .+..+...... .
T Consensus 198 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~----~~~~i~~~d~~~~~~-~~~~~~~~~~~---~----- 264 (416)
T 2pm9_A 198 KKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSD----NDPSILIWDLRNANT-PLQTLNQGHQK---G----- 264 (416)
T ss_dssp TEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCS----SSCCCCEEETTSTTS-CSBCCCSCCSS---C-----
T ss_pred CCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCC----CCceEEEEeCCCCCC-CcEEeecCccC---c-----
Confidence 765433222211 222233333 33 5677666541 111477889877431 11111101111 0
Q ss_pred cCCCCCEEEEE--CCEEEEEeCCCCeEEEEeCCCCcEEEc-cCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeE
Q 043540 328 AGEAPPLLAVV--NNELYAADHEKEEVRKFDKGRKLWRTL-GRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVE 404 (437)
Q Consensus 328 ~~~~~~~~~~~--~~~ly~~gg~~~~v~~yd~~~~~W~~v-~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~ 404 (437)
...++.. ++.+++.++..+.|.+||..+.+-... ....... ...++...+.++++.|+.+ ..
T Consensus 265 ----v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~~l~s~~~d------~~ 329 (416)
T 2pm9_A 265 ----ILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWC-----FKTKFAPEAPDLFACASFD------NK 329 (416)
T ss_dssp ----EEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCC-----CCEEECTTCTTEEEECCSS------SE
T ss_pred ----eeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCce-----EEEEECCCCCCEEEEEecC------Cc
Confidence 0122222 677888887788899999987653322 2111111 1233322222677887754 23
Q ss_pred EEeeecCC
Q 043540 405 LNGWVPDE 412 (437)
Q Consensus 405 ~~~~~~d~ 412 (437)
+.+|..+.
T Consensus 330 i~iw~~~~ 337 (416)
T 2pm9_A 330 IEVQTLQN 337 (416)
T ss_dssp EEEEESCC
T ss_pred EEEEEccC
Confidence 66776544
No 132
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=95.76 E-value=0.76 Score=43.13 Aligned_cols=186 Identities=14% Similarity=0.156 Sum_probs=91.6
Q ss_pred cEEEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCceecCC----CC
Q 043540 140 HWVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGM----TM 215 (437)
Q Consensus 140 ~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~----~~ 215 (437)
.++........+..+|..+.+-...-..+... .......-++..++.||.. ..+.+|+.....-.... .+
T Consensus 77 ~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~----v~~~~~sp~g~~lasg~~d--~~i~v~~~~~~~~~~~~~~~~~~ 150 (354)
T 2pbi_B 77 RRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTW----VMACAYAPSGCAIACGGLD--NKCSVYPLTFDKNENMAAKKKSV 150 (354)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECSSSC----CCEEEECTTSSEEEEESTT--SEEEEEECCCCTTCCSGGGCEEE
T ss_pred CEEEEEeCCCeEEEEECCCCCcceEEecCCCC----EEEEEECCCCCEEEEeeCC--CCEEEEEEeccccccccccceee
Confidence 44555555567778887766543221111111 0011122355666666543 45677776543211100 00
Q ss_pred CCCccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE----CCEEEEEecccCCC
Q 043540 216 NTPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM----DGKFYVIGGIGEGS 289 (437)
Q Consensus 216 ~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~----~g~lyv~GG~~~~~ 289 (437)
.........+.+ ++..++.|+.+ ..+.++|.++++-... +........++.+ ++++++.|+.+
T Consensus 151 ~~h~~~v~~~~~~~~~~~l~t~s~D------~~v~lwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~g~~l~sgs~D--- 219 (354)
T 2pbi_B 151 AMHTNYLSACSFTNSDMQILTASGD------GTCALWDVESGQLLQS--FHGHGADVLCLDLAPSETGNTFVSGGCD--- 219 (354)
T ss_dssp EECSSCEEEEEECSSSSEEEEEETT------SEEEEEETTTCCEEEE--EECCSSCEEEEEECCCSSCCEEEEEETT---
T ss_pred eccCCcEEEEEEeCCCCEEEEEeCC------CcEEEEeCCCCeEEEE--EcCCCCCeEEEEEEeCCCCCEEEEEeCC---
Confidence 000111122222 34455555543 5788999988764321 1111112222222 45777777765
Q ss_pred CccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE--CCEEEEEeCCCCeEEEEeCCCCcE
Q 043540 290 SAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV--NNELYAADHEKEEVRKFDKGRKLW 362 (437)
Q Consensus 290 ~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ly~~gg~~~~v~~yd~~~~~W 362 (437)
..+..||+.+++....-..... . -..+.+ ++.+++.|+....|..||..+..-
T Consensus 220 ----g~v~~wd~~~~~~~~~~~~h~~--~--------------v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~ 274 (354)
T 2pbi_B 220 ----KKAMVWDMRSGQCVQAFETHES--D--------------VNSVRYYPSGDAFASGSDDATCRLYDLRADRE 274 (354)
T ss_dssp ----SCEEEEETTTCCEEEEECCCSS--C--------------EEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred ----CeEEEEECCCCcEEEEecCCCC--C--------------eEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 3588999988765332111110 0 112222 567777787778899999987653
No 133
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=95.73 E-value=0.11 Score=49.14 Aligned_cols=146 Identities=12% Similarity=0.104 Sum_probs=70.1
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCCC---CCccceeeEE-ECCEEEEEeccCCCCCCCceEEEEECCCCcEEe
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMN---TPRCLFGSAS-LGEIAILAGGCDPRGKLLKSAELYNSITGTWMP 259 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~---~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 259 (437)
++.+++.+ . ...+.+||..+++-....... ....-.+++. -+++.++.|+.+ ..+.+||..+++-..
T Consensus 105 d~~~l~~s-~--dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d------g~v~iwd~~~~~~~~ 175 (357)
T 4g56_B 105 EKGILVAS-D--SGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD------FSVKVWDLSQKAVLK 175 (357)
T ss_dssp TTEEEEEE-T--TSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETT------SCEEEEETTTTEEEE
T ss_pred CCCEEEEE-C--CCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC------CeEEEEECCCCcEEE
Confidence 45555433 2 245888888776533222111 1111112222 256677777754 457889998876432
Q ss_pred cCCCCcCCcCeeEEEE--CC-EEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEE
Q 043540 260 ISSMHKARKMCSGVFM--DG-KFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLA 336 (437)
Q Consensus 260 ~~~~~~~r~~~~~~~~--~g-~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (437)
. +.........+.+ ++ .+++.++.+ ..+..||+.+.+-............ ...+
T Consensus 176 ~--~~~h~~~v~~v~~s~~~~~~~~s~~~d-------g~v~~wd~~~~~~~~~~~~~~~~~~--------------v~~v 232 (357)
T 4g56_B 176 S--YNAHSSEVNCVAACPGKDTIFLSCGED-------GRILLWDTRKPKPATRIDFCASDTI--------------PTSV 232 (357)
T ss_dssp E--ECCCSSCEEEEEECTTCSSCEEEEETT-------SCEEECCTTSSSCBCBCCCTTCCSC--------------EEEE
T ss_pred E--EcCCCCCEEEEEEccCCCceeeeeccC-------CceEEEECCCCceeeeeeecccccc--------------ccch
Confidence 2 2222222223322 33 466676654 2478888877643222111111111 1223
Q ss_pred EE---CCEEEEEeCCCCeEEEEeCCCCc
Q 043540 337 VV---NNELYAADHEKEEVRKFDKGRKL 361 (437)
Q Consensus 337 ~~---~~~ly~~gg~~~~v~~yd~~~~~ 361 (437)
.+ ++.+++.|+....|.+||..+.+
T Consensus 233 ~~sp~~~~~la~g~~d~~i~~wd~~~~~ 260 (357)
T 4g56_B 233 TWHPEKDDTFACGDETGNVSLVNIKNPD 260 (357)
T ss_dssp EECTTSTTEEEEEESSSCEEEEESSCGG
T ss_pred hhhhcccceEEEeecccceeEEECCCCc
Confidence 32 46778888777889999988754
No 134
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=95.72 E-value=2.3 Score=44.03 Aligned_cols=117 Identities=15% Similarity=0.162 Sum_probs=73.1
Q ss_pred EEeCCEEEEEcCccCCceEEEEECCCCc--eecCCCCCCC--------ccceeeEEECCEEEEEeccCCCCCCCceEEEE
Q 043540 181 LAVGTELLVFGKEVHGNAIYRYNLLTNT--WSTGMTMNTP--------RCLFGSASLGEIAILAGGCDPRGKLLKSAELY 250 (437)
Q Consensus 181 ~~~~~~lyv~GG~~~~~~v~~yd~~t~~--W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y 250 (437)
+..++.||+... ...++.+|..|++ |+.-...+.. ....+.++.+++||+... ...+..+
T Consensus 74 ~v~~g~vyv~~~---~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~-------dg~l~al 143 (677)
T 1kb0_A 74 VVVDGIMYVSAS---WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-------DGRLIAL 143 (677)
T ss_dssp EEETTEEEEECG---GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-------TSEEEEE
T ss_pred EEECCEEEEECC---CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC-------CCEEEEE
Confidence 668999998863 3578999998874 8754432211 112345567888888632 2578999
Q ss_pred ECCCCc--EEecCC-C-Cc-CCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCc--eEec
Q 043540 251 NSITGT--WMPISS-M-HK-ARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGK--WTQI 309 (437)
Q Consensus 251 d~~t~~--W~~~~~-~-~~-~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~~ 309 (437)
|..|++ |+.-.. - .. .....+.++.++++|+..+.. .......+..||.++++ |+.-
T Consensus 144 D~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~--~~~~~g~v~a~D~~tG~~~W~~~ 207 (677)
T 1kb0_A 144 DAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGA--EYGVRGYITAYDAETGERKWRWF 207 (677)
T ss_dssp ETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCT--TTCCBCEEEEEETTTCCEEEEEE
T ss_pred ECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEeccc--ccCCCCEEEEEECCCCcEEEEec
Confidence 999887 876432 1 11 112234456789998864321 11123569999999875 8654
No 135
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=95.71 E-value=0.83 Score=39.67 Aligned_cols=154 Identities=13% Similarity=0.029 Sum_probs=81.5
Q ss_pred eeEEeCCEEEEEcCccCCceEEEEECCCCcee--cC----CCCCCCccceeeEEE--CCEEEEEeccCCCCCCCceEEEE
Q 043540 179 ESLAVGTELLVFGKEVHGNAIYRYNLLTNTWS--TG----MTMNTPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELY 250 (437)
Q Consensus 179 ~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~--~~----~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~y 250 (437)
+++..++++|+|=| ..+|.++.....+. .+ +.+|. .--++... ++++|++-| +..++|
T Consensus 28 Ai~~~~g~~y~Fkg----~~~wr~~~~~~~~~p~~I~~~wp~Lp~--~iDAa~~~~~~~~iyfFkG--------~~~w~~ 93 (207)
T 1pex_A 28 AITSLRGETMIFKD----RFFWRLHPQQVDAELFLTKSFWPELPN--RIDAAYEHPSHDLIFIFRG--------RKFWAL 93 (207)
T ss_dssp EEEEETTEEEEEET----TEEEEECSSSSCCEEEEHHHHCTTSCS--SCCEEEEETTTTEEEEEET--------TEEEEE
T ss_pred EEEeCCCcEEEEEC----CEEEEEeCCCcCCCceehhHhccCCCC--CccEEEEeccCCcEEEEcc--------CEEEEE
Confidence 44567999999954 34666665432221 11 22332 11123323 589999977 556777
Q ss_pred ECCCCcE---EecCC--CCcCCcCeeEEEE---CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCc
Q 043540 251 NSITGTW---MPISS--MHKARKMCSGVFM---DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGV 322 (437)
Q Consensus 251 d~~t~~W---~~~~~--~~~~r~~~~~~~~---~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~ 322 (437)
+..+-.- +.+.. +|..-...-+++. +|++|++-|.. .+.||..+++-. +.-|...... -
T Consensus 94 ~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG~~---------ywr~d~~~~~~d--~gyPr~i~~~--~ 160 (207)
T 1pex_A 94 NGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGNQ---------VWRYDDTNHIMD--KDYPRLIEED--F 160 (207)
T ss_dssp STTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEETTE---------EEEEETTTTEEC--SSCCCBHHHH--S
T ss_pred eCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeCCE---------EEEEeCcCcccc--CCCCccHHHc--C
Confidence 6432111 22322 2221112334443 48999998764 899998775422 1112111000 0
Q ss_pred ccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCcEEE
Q 043540 323 SVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKLWRT 364 (437)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~W~~ 364 (437)
..+| .-..++...+|++|++- .+..++||..+++=..
T Consensus 161 ~Gip---~~iDaAf~~~g~~YfFk--g~~y~rf~~~~~~v~~ 197 (207)
T 1pex_A 161 PGIG---DKVDAVYEKNGYIYFFN--GPIQFEYSIWSNRIVR 197 (207)
T ss_dssp TTSC---SCCSEEEEETTEEEEEE--TTEEEEEETTTTEEEE
T ss_pred CCCC---CCccEEEEcCCcEEEEE--CCEEEEEeCCccEEec
Confidence 0001 01134556799999994 5679999998876443
No 136
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=95.71 E-value=0.11 Score=48.82 Aligned_cols=157 Identities=9% Similarity=0.138 Sum_probs=84.8
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCCCCC-ccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEec
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTP-RCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPI 260 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 260 (437)
++.+++.|+.. ..+.+||..++.|.....+... .....++.+ ++..++.|+.+ ..+.++|..++.++.+
T Consensus 27 ~g~~las~~~D--~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D------~~v~iw~~~~~~~~~~ 98 (345)
T 3fm0_A 27 AGTLLASCGGD--RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD------ATTCIWKKNQDDFECV 98 (345)
T ss_dssp TSSCEEEEETT--SCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT------SCEEEEEECCC-EEEE
T ss_pred CCCEEEEEcCC--CeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECC------CcEEEEEccCCCeEEE
Confidence 44555555432 3577788878776532211111 111222222 56677777754 4567788877776655
Q ss_pred CCCCcCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCCc-eEecCCCCCcccCCCCcccccccCCCCCEEEE
Q 043540 261 SSMHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGK-WTQITDMFPARIGSDGVSVISAAGEAPPLLAV 337 (437)
Q Consensus 261 ~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (437)
..+.........+.+ ++++++.|+.+ ..+..||+.+.. +..+..+...... + ..++.
T Consensus 99 ~~~~~h~~~v~~v~~sp~~~~l~s~s~D-------~~v~iwd~~~~~~~~~~~~~~~h~~~----v---------~~~~~ 158 (345)
T 3fm0_A 99 TTLEGHENEVKSVAWAPSGNLLATCSRD-------KSVWVWEVDEEDEYECVSVLNSHTQD----V---------KHVVW 158 (345)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETT-------SCEEEEEECTTSCEEEEEEECCCCSC----E---------EEEEE
T ss_pred EEccCCCCCceEEEEeCCCCEEEEEECC-------CeEEEEECCCCCCeEEEEEecCcCCC----e---------EEEEE
Confidence 444333333333333 67788887765 247888886642 3222211111111 0 11122
Q ss_pred -ECCEEEEEeCCCCeEEEEeCCCCcEEEccCC
Q 043540 338 -VNNELYAADHEKEEVRKFDKGRKLWRTLGRL 368 (437)
Q Consensus 338 -~~~~ly~~gg~~~~v~~yd~~~~~W~~v~~l 368 (437)
-++.+++.|+..+.|..||..++.|..+..+
T Consensus 159 ~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~ 190 (345)
T 3fm0_A 159 HPSQELLASASYDDTVKLYREEEDDWVCCATL 190 (345)
T ss_dssp CSSSSCEEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred CCCCCEEEEEeCCCcEEEEEecCCCEEEEEEe
Confidence 2567777777778899999999888765444
No 137
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=95.70 E-value=0.6 Score=44.28 Aligned_cols=147 Identities=8% Similarity=0.065 Sum_probs=76.8
Q ss_pred CEEEEEcCccCCceEEEEECCCCceecCCCCCCC----ccceeeEEE--C-CEEEEEeccCCCCCCCceEEEEECCCCcE
Q 043540 185 TELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTP----RCLFGSASL--G-EIAILAGGCDPRGKLLKSAELYNSITGTW 257 (437)
Q Consensus 185 ~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~----r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W 257 (437)
+.+++.|+. ...+.+||..+++-...-..... ......+.+ + ..+++.|+.++. ...+.+||..+..-
T Consensus 178 ~~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~---~~~i~~~d~~~~~~ 252 (416)
T 2pm9_A 178 AHVFASAGS--SNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN---DPSILIWDLRNANT 252 (416)
T ss_dssp TTEEEEESS--SSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS---SCCCCEEETTSTTS
T ss_pred CcEEEEEcC--CCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC---CceEEEEeCCCCCC
Confidence 456666643 34688999988765432222211 122222222 2 357777665431 12677899887531
Q ss_pred EecCCCC-cCCcCeeEEEE---CCEEEEEecccCCCCccCCeEEEEECCCCceEe-cCCCCCcccCCCCcccccccCCCC
Q 043540 258 MPISSMH-KARKMCSGVFM---DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQ-ITDMFPARIGSDGVSVISAAGEAP 332 (437)
Q Consensus 258 ~~~~~~~-~~r~~~~~~~~---~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~ 332 (437)
.+..+. ........+.+ ++++++.|+.+ ..+..||+.+.+-.. +.......
T Consensus 253 -~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d-------g~v~~wd~~~~~~~~~~~~~~~~v---------------- 308 (416)
T 2pm9_A 253 -PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRD-------NTVLLWNPESAEQLSQFPARGNWC---------------- 308 (416)
T ss_dssp -CSBCCCSCCSSCEEEEEECSSCSSCEEEEESS-------SEEEEECSSSCCEEEEEECSSSCC----------------
T ss_pred -CcEEeecCccCceeEEEeCCCCCCeEEEEeCC-------CCEEEeeCCCCccceeecCCCCce----------------
Confidence 111222 11222233333 67788887765 358889988764322 11111111
Q ss_pred CEEEEE-CC-EEEEEeCCCCeEEEEeCCCC
Q 043540 333 PLLAVV-NN-ELYAADHEKEEVRKFDKGRK 360 (437)
Q Consensus 333 ~~~~~~-~~-~ly~~gg~~~~v~~yd~~~~ 360 (437)
..++.. ++ .+++.++..+.|.+||..+.
T Consensus 309 ~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 309 FKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp CCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred EEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 112322 44 67788777788999988654
No 138
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=95.69 E-value=0.0033 Score=59.21 Aligned_cols=44 Identities=7% Similarity=0.092 Sum_probs=38.3
Q ss_pred CCCCCCCCCHHHHHHHhhccCccchhhHHHHhHHHHHhhcCcch
Q 043540 85 SNSLIPELGRDITINCLLRCSRSDYGAIASLNRAFRSLIQSGEL 128 (437)
Q Consensus 85 ~~~~~~~LP~dl~~~~L~rlP~~~~~~~~~V~k~w~sli~s~~~ 128 (437)
....|..||+|++..|+.+|+..++.+++.|||+|+.++.++.+
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~ 48 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 48 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTT
T ss_pred ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchh
Confidence 35668899999999999999999999999999999999876553
No 139
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=95.67 E-value=0.45 Score=44.83 Aligned_cols=202 Identities=11% Similarity=0.001 Sum_probs=94.9
Q ss_pred ceEEEEECCCCceecCCCCCCCccceeeEEE-CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEE-
Q 043540 197 NAIYRYNLLTNTWSTGMTMNTPRCLFGSASL-GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVF- 274 (437)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~- 274 (437)
..++++|+.+++-+.+..-+. ...+....- +++.+++............++.+|..+...+.+............+.
T Consensus 168 ~~l~~~d~~~g~~~~l~~~~~-~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~s 246 (388)
T 3pe7_A 168 CRLMRVDLKTGESTVILQENQ-WLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWV 246 (388)
T ss_dssp EEEEEEETTTCCEEEEEEESS-CEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEEC
T ss_pred ceEEEEECCCCceEEeecCCc-cccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceEC
Confidence 679999999887665542211 112222333 44433333322221224689999998877766654321111111122
Q ss_pred ECCE-EEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCE-EEEEe------
Q 043540 275 MDGK-FYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNE-LYAAD------ 346 (437)
Q Consensus 275 ~~g~-lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ly~~g------ 346 (437)
-||+ |+++.... ......++.+|+.+++-+.+..++..... ...+ . .....-+|+ |++..
T Consensus 247 pdg~~l~~~~~~~---~~~~~~l~~~d~~~g~~~~l~~~~~~~~~----~~~~-~----~~~~spdg~~l~~~~~~~~~~ 314 (388)
T 3pe7_A 247 PDGSALVYVSYLK---GSPDRFIYSADPETLENRQLTSMPACSHL----MSNY-D----GSLMVGDGSDAPVDVQDDSGY 314 (388)
T ss_dssp TTSSCEEEEEEET---TCCCEEEEEECTTTCCEEEEEEECCEEEE----EECT-T----SSEEEEEECCC----------
T ss_pred CCCCEEEEEecCC---CCCcceEEEEecCCCceEEEEcCCCceee----eecC-C----CCeEccCCCcceeEeeecccc
Confidence 2665 54443222 11112489999999887666443320000 0000 0 011222333 33221
Q ss_pred --CCCCeEEEEeCCCCcEEEccCCCCccc------CCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCc
Q 043540 347 --HEKEEVRKFDKGRKLWRTLGRLPEQAS------SMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHW 417 (437)
Q Consensus 347 --g~~~~v~~yd~~~~~W~~v~~lp~~~~------~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W 417 (437)
.....|+++|..+++-..+...+.... ...-...++..-+..|++..... + ...+|.+|.....|
T Consensus 315 ~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~----g--~~~l~~~~l~~~~~ 387 (388)
T 3pe7_A 315 KIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVH----G--KPALYLATLPESVW 387 (388)
T ss_dssp --CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT----S--SCEEEEEECCGGGG
T ss_pred ccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCC----C--ceeEEEEECChhcc
Confidence 234579999999888776653322000 00001233333344566654332 1 13577777766665
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=95.67 E-value=1.4 Score=45.41 Aligned_cols=243 Identities=14% Similarity=0.076 Sum_probs=117.4
Q ss_pred ceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCC-----CceecCCCCCCCcc---
Q 043540 149 KEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLT-----NTWSTGMTMNTPRC--- 220 (437)
Q Consensus 149 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t-----~~W~~~~~~~~~r~--- 220 (437)
..++.+|..+++-..+........ ....+-+++.+++. ....++++|..+ ++...+........
T Consensus 101 ~~i~~~d~~~~~~~~l~~~~~~~~-----~~~~SpdG~~la~~---~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g 172 (706)
T 2z3z_A 101 GGLVGFDMLARKVTYLFDTNEETA-----SLDFSPVGDRVAYV---RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYG 172 (706)
T ss_dssp TEEEEEETTTTEEEEEECCTTCCT-----TCEECTTSSEEEEE---ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEES
T ss_pred CEEEEEECCCCceEEccCCccccc-----CCcCCCCCCEEEEE---ECCeEEEEecCcccccCCCcEEeccCCCCCeEcc
Confidence 678889988876655433222111 11133344433443 235789999888 76665543322211
Q ss_pred ----------ceee-EEECCEEEEEeccCCC---------------------------CCCCceEEEEECCCCcEEecCC
Q 043540 221 ----------LFGS-ASLGEIAILAGGCDPR---------------------------GKLLKSAELYNSITGTWMPISS 262 (437)
Q Consensus 221 ----------~~~~-~~~~~~iyv~GG~~~~---------------------------~~~~~~~~~yd~~t~~W~~~~~ 262 (437)
..+. .+-+++.++++..+.. ......++++|..+++-..+..
T Consensus 173 ~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~ 252 (706)
T 2z3z_A 173 QAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT 252 (706)
T ss_dssp SCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC
T ss_pred cchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc
Confidence 0111 2225554444443211 1123678999999887665543
Q ss_pred CCcCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCC-ceEecCCCCCc-ccCCCCcccccccCCCCCEEEEE
Q 043540 263 MHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETG-KWTQITDMFPA-RIGSDGVSVISAAGEAPPLLAVV 338 (437)
Q Consensus 263 ~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~-~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 338 (437)
..........+.. ||+..+++..+ .......+..+|+.++ ....+...... .... .......-
T Consensus 253 ~~~~~~~~~~~~~spdg~~l~~~~~~--~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~-----------~~~~~~sp 319 (706)
T 2z3z_A 253 GEPKEKFLTNLSWSPDENILYVAEVN--RAQNECKVNAYDAETGRFVRTLFVETDKHYVEP-----------LHPLTFLP 319 (706)
T ss_dssp CSCTTCEEEEEEECTTSSEEEEEEEC--TTSCEEEEEEEETTTCCEEEEEEEEECSSCCCC-----------CSCCEECT
T ss_pred CCCCceeEeeEEEECCCCEEEEEEeC--CCCCeeEEEEEECCCCceeeEEEEccCCCeECc-----------cCCceeec
Confidence 2211122222322 67644444433 1223346899999988 66655321110 0000 00112223
Q ss_pred --CCEEEEEeCC--CCeEEEEeCCCCcEEEccCCCCcccCCCccc-EEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCC
Q 043540 339 --NNELYAADHE--KEEVRKFDKGRKLWRTLGRLPEQASSMNGWG-LAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEG 413 (437)
Q Consensus 339 --~~~ly~~gg~--~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~-~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~ 413 (437)
+|++++.+.. ...++.+|...+....+..-..... . .++..-++.||+.+.... .....+|.+|..
T Consensus 320 ~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~-----~~~~~spdg~~l~~~~~~~~----~~~~~l~~~d~~ 390 (706)
T 2z3z_A 320 GSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVT-----NFAGFDPKGTRLYFESTEAS----PLERHFYCIDIK 390 (706)
T ss_dssp TCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEE-----EEEEECTTSSEEEEEESSSC----TTCBEEEEEETT
T ss_pred CCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEE-----eeeEEcCCCCEEEEEecCCC----CceEEEEEEEcC
Confidence 6776655533 3568888877777776643111110 1 122222456777664321 112345666665
Q ss_pred CCCceecC
Q 043540 414 PPHWKLLA 421 (437)
Q Consensus 414 ~~~W~~l~ 421 (437)
+.+.+.+.
T Consensus 391 ~~~~~~l~ 398 (706)
T 2z3z_A 391 GGKTKDLT 398 (706)
T ss_dssp CCCCEESC
T ss_pred CCCceecc
Confidence 65555554
No 141
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=95.65 E-value=0.9 Score=41.95 Aligned_cols=192 Identities=10% Similarity=0.005 Sum_probs=91.0
Q ss_pred EEEEEecCceEEEeccCCCCeee-CCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCc
Q 043540 141 WVYFSCKLKEWEAFDPIHHRWMH-LPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPR 219 (437)
Q Consensus 141 ~l~~~~~~~~~~~yDp~~~~W~~-l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r 219 (437)
+++.......+..||..+.+-.. +.....+. .+ ....-++..++.|+. ...+.+||..+++-...-... .
T Consensus 46 ~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v--~~---~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~--~ 116 (369)
T 3zwl_B 46 LLFSCSKDSSASVWYSLNGERLGTLDGHTGTI--WS---IDVDCFTKYCVTGSA--DYSIKLWDVSNGQCVATWKSP--V 116 (369)
T ss_dssp EEEEEESSSCEEEEETTTCCEEEEECCCSSCE--EE---EEECTTSSEEEEEET--TTEEEEEETTTCCEEEEEECS--S
T ss_pred EEEEEeCCCEEEEEeCCCchhhhhhhhcCCcE--EE---EEEcCCCCEEEEEeC--CCeEEEEECCCCcEEEEeecC--C
Confidence 44444445567788877665432 21111110 00 001123555555543 356889998877644332211 1
Q ss_pred cceeeEEE-CCEEEEEeccCCCCCCCceEEEEECCCCc----EEecCCCC-----cCCc--CeeEEEE--CCEEEEEecc
Q 043540 220 CLFGSASL-GEIAILAGGCDPRGKLLKSAELYNSITGT----WMPISSMH-----KARK--MCSGVFM--DGKFYVIGGI 285 (437)
Q Consensus 220 ~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~----W~~~~~~~-----~~r~--~~~~~~~--~g~lyv~GG~ 285 (437)
....++.. ++..+++++.+. ......+.+||..+.. +......+ .... ....+.+ +++++++|+.
T Consensus 117 ~v~~~~~~~~~~~l~~~~~~~-~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 195 (369)
T 3zwl_B 117 PVKRVEFSPCGNYFLAILDNV-MKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHK 195 (369)
T ss_dssp CEEEEEECTTSSEEEEEECCB-TTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEET
T ss_pred CeEEEEEccCCCEEEEecCCc-cCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcC
Confidence 11122222 445555554321 1122567777765543 22211111 0001 2222222 5667777665
Q ss_pred cCCCCccCCeEEEEECCCC-ce-EecCCCCCcccCCCCcccccccCCCCCEEEE-ECCEEEEEeCCCCeEEEEeCCCCcE
Q 043540 286 GEGSSAMLTDVEMYDLETG-KW-TQITDMFPARIGSDGVSVISAAGEAPPLLAV-VNNELYAADHEKEEVRKFDKGRKLW 362 (437)
Q Consensus 286 ~~~~~~~~~~v~~yd~~~~-~W-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~~~v~~yd~~~~~W 362 (437)
+ ..+..||+.++ .- ..+....... ..++. -++.+++.++..+.|.+||..+.+-
T Consensus 196 d-------g~i~i~d~~~~~~~~~~~~~~~~~v----------------~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 252 (369)
T 3zwl_B 196 D-------GKISKYDVSNNYEYVDSIDLHEKSI----------------SDMQFSPDLTYFITSSRDTNSFLVDVSTLQV 252 (369)
T ss_dssp T-------SEEEEEETTTTTEEEEEEECCSSCE----------------EEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred C-------CEEEEEECCCCcEeEEEEecCCCce----------------eEEEECCCCCEEEEecCCceEEEEECCCCce
Confidence 4 35889999873 22 2221111100 11222 2677777777778899999988765
Q ss_pred EEc
Q 043540 363 RTL 365 (437)
Q Consensus 363 ~~v 365 (437)
...
T Consensus 253 ~~~ 255 (369)
T 3zwl_B 253 LKK 255 (369)
T ss_dssp EEE
T ss_pred eee
Confidence 443
No 142
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=95.62 E-value=1.4 Score=40.83 Aligned_cols=157 Identities=9% Similarity=0.050 Sum_probs=80.6
Q ss_pred CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEE-ECCEEEEEecccCCCCccCCeEEEEECCCCce
Q 043540 228 GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVF-MDGKFYVIGGIGEGSSAMLTDVEMYDLETGKW 306 (437)
Q Consensus 228 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W 306 (437)
++..++.|+.+ ..+.+||..+++-.............++++ -++++++.|+.+ ..+..||+.+.+-
T Consensus 138 ~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~d-------g~i~iwd~~~~~~ 204 (343)
T 3lrv_A 138 NTEYFIWADNR------GTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPD-------GILDVYNLSSPDQ 204 (343)
T ss_dssp -CCEEEEEETT------CCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTT-------SCEEEEESSCTTS
T ss_pred CCCEEEEEeCC------CcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCC-------CEEEEEECCCCCC
Confidence 45667777754 467899998877643322222211222233 378888888765 3588999987653
Q ss_pred E--ecCCCCCcccCCCCcccccccCCCCCEEEEE-CCEEEEEeCCCCeEEEEeCCCCcEE-EccCCCCcccCCCcccEEE
Q 043540 307 T--QITDMFPARIGSDGVSVISAAGEAPPLLAVV-NNELYAADHEKEEVRKFDKGRKLWR-TLGRLPEQASSMNGWGLAF 382 (437)
Q Consensus 307 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ly~~gg~~~~v~~yd~~~~~W~-~v~~lp~~~~~~~~~~~a~ 382 (437)
. .+.. .... .+ ..++.. ++..++.++. +.|.+||..+.+-. .+..+............++
T Consensus 205 ~~~~~~~---~h~~---~v---------~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (343)
T 3lrv_A 205 ASSRFPV---DEEA---KI---------KEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDI 268 (343)
T ss_dssp CCEECCC---CTTS---CE---------EEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-----CCEEEEE
T ss_pred CccEEec---cCCC---CE---------EEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeecccccccccccceEEEE
Confidence 2 2211 0111 00 112222 5666666654 48999999875321 1111111111100001222
Q ss_pred EEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCcee
Q 043540 383 RACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKL 419 (437)
Q Consensus 383 ~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~ 419 (437)
..+++.++.|+.. ...+.+|.++.....|..
T Consensus 269 -~~~g~~l~~~s~~-----d~~i~v~~~~~~~~~~~~ 299 (343)
T 3lrv_A 269 -DDSGKNMIAYSNE-----SNSLTIYKFDKKTKNWTK 299 (343)
T ss_dssp -CTTSSEEEEEETT-----TTEEEEEEECTTTCSEEE
T ss_pred -CCCCCEEEEecCC-----CCcEEEEEEcccccceEe
Confidence 2245555554321 124789999888889987
No 143
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=95.59 E-value=0.43 Score=44.20 Aligned_cols=150 Identities=12% Similarity=0.071 Sum_probs=74.8
Q ss_pred ccEEEEEecCceEEEeccCCCCe-eeCCCCCCccccccCCceeEEeC----CEEEEEcCccCCceEEEEECCCCceecCC
Q 043540 139 EHWVYFSCKLKEWEAFDPIHHRW-MHLPPMNASDCFMCADKESLAVG----TELLVFGKEVHGNAIYRYNLLTNTWSTGM 213 (437)
Q Consensus 139 ~~~l~~~~~~~~~~~yDp~~~~W-~~l~~~p~~~~~~~~~~~~~~~~----~~lyv~GG~~~~~~v~~yd~~t~~W~~~~ 213 (437)
+..++.......+..||..+++. ..+.....+.............+ +.+++.|+. ...+.+||..+++-...
T Consensus 34 ~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~--dg~i~v~d~~~~~~~~~- 110 (366)
T 3k26_A 34 DPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS--RGIIRIINPITMQCIKH- 110 (366)
T ss_dssp SCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET--TCEEEEECTTTCCEEEE-
T ss_pred CceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC--CCEEEEEEchhceEeee-
Confidence 34455555556788888875543 22221111100000000112223 456666653 34688899877643221
Q ss_pred CCCCCccceeeEEE---CCEEEEEeccCCCCCCCceEEEEECCCCcEEec-CCCCcCCcCeeEEEE--CCEEEEEecccC
Q 043540 214 TMNTPRCLFGSASL---GEIAILAGGCDPRGKLLKSAELYNSITGTWMPI-SSMHKARKMCSGVFM--DGKFYVIGGIGE 287 (437)
Q Consensus 214 ~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~-~~~~~~r~~~~~~~~--~g~lyv~GG~~~ 287 (437)
+........+..+ ++.+++.|+.+ ..+.+||..+++-... ..+.........+.+ +++.++.|+.+
T Consensus 111 -~~~~~~~i~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d- 182 (366)
T 3k26_A 111 -YVGHGNAINELKFHPRDPNLLLSVSKD------HALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD- 182 (366)
T ss_dssp -EESCCSCEEEEEECSSCTTEEEEEETT------SCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETT-
T ss_pred -ecCCCCcEEEEEECCCCCCEEEEEeCC------CeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCC-
Confidence 1111111222222 56777777754 5688999988764332 222222223333333 56677777664
Q ss_pred CCCccCCeEEEEECCCCc
Q 043540 288 GSSAMLTDVEMYDLETGK 305 (437)
Q Consensus 288 ~~~~~~~~v~~yd~~~~~ 305 (437)
..+..||+.+.+
T Consensus 183 ------g~i~i~d~~~~~ 194 (366)
T 3k26_A 183 ------HSLKLWRINSKR 194 (366)
T ss_dssp ------SCEEEEESCSHH
T ss_pred ------CCEEEEECCCCc
Confidence 258889988654
No 144
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=95.57 E-value=1.7 Score=41.29 Aligned_cols=224 Identities=12% Similarity=0.028 Sum_probs=109.1
Q ss_pred EEEEEecCceEEEeccCCCCeeeCC-CCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCc
Q 043540 141 WVYFSCKLKEWEAFDPIHHRWMHLP-PMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPR 219 (437)
Q Consensus 141 ~l~~~~~~~~~~~yDp~~~~W~~l~-~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r 219 (437)
.+........+..||..+.+-...- ....+. .+ ....-++.+++.|+. ...+.+||..+.+-.. .+....
T Consensus 111 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v--~~---~~~~~~~~~l~s~s~--d~~i~iwd~~~~~~~~--~~~~h~ 181 (420)
T 3vl1_A 111 RFILGTTEGDIKVLDSNFNLQREIDQAHVSEI--TK---LKFFPSGEALISSSQ--DMQLKIWSVKDGSNPR--TLIGHR 181 (420)
T ss_dssp EEEEEETTSCEEEECTTSCEEEEETTSSSSCE--EE---EEECTTSSEEEEEET--TSEEEEEETTTCCCCE--EEECCS
T ss_pred EEEEEECCCCEEEEeCCCcceeeecccccCcc--EE---EEECCCCCEEEEEeC--CCeEEEEeCCCCcCce--EEcCCC
Confidence 4444445567888888766543321 111110 00 001124555555543 3468899987654211 111111
Q ss_pred cc-eeeEEE-CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCC-CcCCcCeeEE-----------------------
Q 043540 220 CL-FGSASL-GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSM-HKARKMCSGV----------------------- 273 (437)
Q Consensus 220 ~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~-~~~r~~~~~~----------------------- 273 (437)
.. .+++.. ++..++.|+.+ ..+.+||..+++-...-.. .........+
T Consensus 182 ~~v~~~~~~~~~~~l~s~~~d------~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~ 255 (420)
T 3vl1_A 182 ATVTDIAIIDRGRNVLSASLD------GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 255 (420)
T ss_dssp SCEEEEEEETTTTEEEEEETT------SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCS
T ss_pred CcEEEEEEcCCCCEEEEEcCC------CcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEE
Confidence 11 122222 55666676654 4578899887753222111 1111111111
Q ss_pred EECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE-CCE-EEEEeCCCCe
Q 043540 274 FMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV-NNE-LYAADHEKEE 351 (437)
Q Consensus 274 ~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-ly~~gg~~~~ 351 (437)
.-++++.+.|+.+ ..+..||+.+.+-...- ....... ...++.. ++. +++.|+..+.
T Consensus 256 s~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~--~~~~~~~------------v~~~~~~~~~~~~l~~g~~dg~ 314 (420)
T 3vl1_A 256 GTYGKYVIAGHVS-------GVITVHNVFSKEQTIQL--PSKFTCS------------CNSLTVDGNNANYIYAGYENGM 314 (420)
T ss_dssp SCTTEEEEEEETT-------SCEEEEETTTCCEEEEE--CCTTSSC------------EEEEEECSSCTTEEEEEETTSE
T ss_pred cCCCCEEEEEcCC-------CeEEEEECCCCceeEEc--ccccCCC------------ceeEEEeCCCCCEEEEEeCCCe
Confidence 1267777777665 24889999876532211 1111110 0112222 454 7777777889
Q ss_pred EEEEeCCCCcE--EEccCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCC
Q 043540 352 VRKFDKGRKLW--RTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDE 412 (437)
Q Consensus 352 v~~yd~~~~~W--~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~ 412 (437)
|.+||..+..- ..+..-.... -.++...++++++.|+.+ ..+.+|....
T Consensus 315 i~vwd~~~~~~~~~~~~~~~~~~------v~~~~~~~~~~l~s~~~d------~~v~iw~~~~ 365 (420)
T 3vl1_A 315 LAQWDLRSPECPVGEFLINEGTP------INNVYFAAGALFVSSGFD------TSIKLDIISD 365 (420)
T ss_dssp EEEEETTCTTSCSEEEEESTTSC------EEEEEEETTEEEEEETTT------EEEEEEEECC
T ss_pred EEEEEcCCCcCchhhhhccCCCC------ceEEEeCCCCEEEEecCC------ccEEEEeccC
Confidence 99999987531 2222111111 122334577888888754 3567787654
No 145
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=95.54 E-value=2.7 Score=43.58 Aligned_cols=117 Identities=13% Similarity=0.129 Sum_probs=68.1
Q ss_pred cEEEEEecCceEEEeccCCC--CeeeCCCCCCccc-ccc---CCceeEEeCCEEEEEcCccCCceEEEEECCCCc--eec
Q 043540 140 HWVYFSCKLKEWEAFDPIHH--RWMHLPPMNASDC-FMC---ADKESLAVGTELLVFGKEVHGNAIYRYNLLTNT--WST 211 (437)
Q Consensus 140 ~~l~~~~~~~~~~~yDp~~~--~W~~l~~~p~~~~-~~~---~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~--W~~ 211 (437)
..+|+......+.++|..++ .|+.-...+.... ..+ .....+..++.||+.. ....++.+|..|++ |+.
T Consensus 71 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~---~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 71 GVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGV---LDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEEC---TTSEEEEEETTTCCEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEc---cCCEEEEEECCCCCEeeee
Confidence 44566655567899998876 4876443322110 000 1123356788888865 23578999998875 775
Q ss_pred CCC-CCC--CccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCc--EEec
Q 043540 212 GMT-MNT--PRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGT--WMPI 260 (437)
Q Consensus 212 ~~~-~~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~ 260 (437)
-.. -+. .....+-++.++.+|+..+.... .....+..||..|++ |+.-
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~-~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNGKVVIGNGGAEF-GVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETTEEEECCBCTTT-CCBCEEEEEETTTCCEEEEEE
T ss_pred cCcCCCCCCccccCCcEEECCEEEEEeCCCcc-CCCCEEEEEECCCCcEEEEec
Confidence 432 111 11222345678888875332111 124679999999987 8753
No 146
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=95.53 E-value=0.46 Score=46.68 Aligned_cols=177 Identities=16% Similarity=0.206 Sum_probs=96.1
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecC--CCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCc-----
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTG--MTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGT----- 256 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~--~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~----- 256 (437)
++.+|+|-| +..|.||..+++.... +.++ . .-++....+++|++-| +..+.||+.+++
T Consensus 158 ~~~~yfFkG----~~yw~yd~~~~~~~~~~w~gi~--~-iDAA~~~~g~~YfFkG--------~~y~rfd~~~~~v~~gy 222 (460)
T 1qhu_A 158 DEGILFFQG----NRKWFWDLTTGTKKERSWPAVG--N-CTSALRWLGRYYCFQG--------NQFLRFNPVSGEVPPGY 222 (460)
T ss_dssp SSEEEEEET----TEEEEEETTTTEEEEECCTTSC--C-CSEEEEETTEEEEEET--------TEEEEECTTTCCCCTTC
T ss_pred CCeEEEEec----ccEEEEecccceeecccCCCCC--c-cchheeeCCceEEEEC--------CEEEEEcCccCcccCCC
Confidence 678888865 3689999987754321 2222 2 2345556799999987 556788876543
Q ss_pred -------EEecCCCC------------------cCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCCceE--
Q 043540 257 -------WMPISSMH------------------KARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWT-- 307 (437)
Q Consensus 257 -------W~~~~~~~------------------~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~-- 307 (437)
|.-++... .+....-++.. +|++|++-|.. .+.+|.....+.
T Consensus 223 Pk~is~~w~~c~~~g~~~~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~tYFFKg~~---------yWR~~~~~~~~~p~ 293 (460)
T 1qhu_A 223 PLDVRDYFLSCPGRGHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGATYVFSGSH---------YWRLDTNRDGWHSW 293 (460)
T ss_dssp CEEHHHHTSCCTTCCSCC-------CCCTTTTTCTTCCCCEEEECTTCCEEEEETTE---------EEECTTGGGCCCCE
T ss_pred CcchhhcccCCCCCCCccccccCCccccccccccCCCCcCEEEecCCCeEEEEeCCE---------EEEEecCCCCcCcc
Confidence 22211100 00112233443 68999987754 666665543221
Q ss_pred ec----CCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCcEEEccCCCCccc-------C--
Q 043540 308 QI----TDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKLWRTLGRLPEQAS-------S-- 374 (437)
Q Consensus 308 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~~~~-------~-- 374 (437)
.| +.+|... -++...++++|++- .+.+++|+..++ .+.+..-|.... .
T Consensus 294 ~Is~~WpglP~~I----------------DAAf~~~~~~yfFk--G~~yw~f~~~~g-~~~~~GyPK~I~~~lGlp~~~~ 354 (460)
T 1qhu_A 294 PIAHQWPQGPSTV----------------DAAFSWEDKLYLIQ--DTKVYVFLTKGG-YTLVNGYPKRLEKELGSPPVIS 354 (460)
T ss_dssp EGGGTCTTSCSSC----------------SEEEEETTEEEEEE--TTEEEEEECSBS-CEECTTCCEEHHHHHCCCSSCC
T ss_pred chhhhccCCCCCC----------------cEEEEECCeEEEEe--CCEEEEEeCCCC-ceecCCCCeEHHHhccCCCccc
Confidence 11 1122211 34566789999994 467999987542 222222222111 0
Q ss_pred CCcccEEEEE-eCCEEEEEcCCCCCCCCeeEEEeeecCCC
Q 043540 375 MNGWGLAFRA-CGDQLIVIGGPRDSGGGIVELNGWVPDEG 413 (437)
Q Consensus 375 ~~~~~~a~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~d~~ 413 (437)
....-+|+.. .++++|+|-|.. .|+||..
T Consensus 355 ~~~IDAA~~~~~~~ktyfFkG~~----------ywryd~~ 384 (460)
T 1qhu_A 355 LEAVDAAFVCPGSSRLHIMAGRR----------LWWLDLK 384 (460)
T ss_dssp CSCCCEEECCTTCCEEEEEETTE----------EEEEEGG
T ss_pred cCcccEEEEeCCCCEEEEEECCE----------EEEEECC
Confidence 1112344432 357999997743 6676654
No 147
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=95.50 E-value=0.5 Score=43.82 Aligned_cols=200 Identities=9% Similarity=0.023 Sum_probs=91.5
Q ss_pred EEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCC-----ceecCCCCC
Q 043540 142 VYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTN-----TWSTGMTMN 216 (437)
Q Consensus 142 l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~-----~W~~~~~~~ 216 (437)
+........+..||...+....+..+....+..........-++.+++.|+.. ..+.+||..+. .+..+..+.
T Consensus 27 las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D--~~v~iw~~~~~~~~~~~~~~~~~~~ 104 (330)
T 2hes_X 27 LATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD--STVSIWAKEESADRTFEMDLLAIIE 104 (330)
T ss_dssp EEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT--SCEEEEEC-------CCCEEEEEEC
T ss_pred EEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC--CcEEEEEcccCcCccccceeEEEEc
Confidence 33334456677888776544332222111000000000011245566666433 35777776432 122111111
Q ss_pred CCccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCC--CcEEecCCCCcCCcCeeEEEE--CCEEEEEecccCCCC
Q 043540 217 TPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSIT--GTWMPISSMHKARKMCSGVFM--DGKFYVIGGIGEGSS 290 (437)
Q Consensus 217 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t--~~W~~~~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~ 290 (437)
........+.+ +++.++.|+.+ ..+.++|... ..++.+..+.........+.. ++.+++.|+.+
T Consensus 105 ~h~~~V~~v~~sp~g~~las~s~D------~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D---- 174 (330)
T 2hes_X 105 GHENEVKGVAWSNDGYYLATCSRD------KSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYD---- 174 (330)
T ss_dssp ----CEEEEEECTTSCEEEEEETT------SCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETT----
T ss_pred CCCCcEEEEEECCCCCEEEEEeCC------CEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCC----
Confidence 11111122222 56666777654 4577888743 334443333322222333333 67777777765
Q ss_pred ccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE-C--CEEEEEeCCCCeEEEEeCCC------Cc
Q 043540 291 AMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV-N--NELYAADHEKEEVRKFDKGR------KL 361 (437)
Q Consensus 291 ~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~ly~~gg~~~~v~~yd~~~------~~ 361 (437)
..+..||..++.|..+..+...... + ..+... + +.+++.|+....|.+||..+ ..
T Consensus 175 ---~~i~iW~~~~~~~~~~~~~~~h~~~----v---------~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~ 238 (330)
T 2hes_X 175 ---DTVRIWKDYDDDWECVAVLNGHEGT----V---------WSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQE 238 (330)
T ss_dssp ---SCEEEEEEETTEEEEEEEECCCSSC----E---------EEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEE
T ss_pred ---CeEEEEECCCCCeeEEEEccCCCCc----E---------EEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccce
Confidence 2477888877777655433211111 0 112221 2 34555666667788887643 24
Q ss_pred EEEccCCC
Q 043540 362 WRTLGRLP 369 (437)
Q Consensus 362 W~~v~~lp 369 (437)
|..+..++
T Consensus 239 ~~~~~~~~ 246 (330)
T 2hes_X 239 WVCEAILP 246 (330)
T ss_dssp EEEEEECC
T ss_pred eEEeeecc
Confidence 66655444
No 148
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=95.47 E-value=1.7 Score=41.26 Aligned_cols=141 Identities=11% Similarity=0.048 Sum_probs=73.4
Q ss_pred CceEEEEECCCCc-e-ecCCCCCCCccceeeEEE---CCEEEEEeccCCCCCCCceEEEEECCCCcEEe-----cCCCCc
Q 043540 196 GNAIYRYNLLTNT-W-STGMTMNTPRCLFGSASL---GEIAILAGGCDPRGKLLKSAELYNSITGTWMP-----ISSMHK 265 (437)
Q Consensus 196 ~~~v~~yd~~t~~-W-~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~-----~~~~~~ 265 (437)
...+.+||..+.. . ..+..+...........+ ++.+++.|+.+ ..+.+||..++.... +..+..
T Consensus 56 ~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~d------g~v~vw~~~~~~~~~~~~~~~~~~~~ 129 (402)
T 2aq5_A 56 GGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSED------CTVMVWEIPDGGLVLPLREPVITLEG 129 (402)
T ss_dssp SCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETT------SEEEEEECCTTCCSSCBCSCSEEEEC
T ss_pred CCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCC------CeEEEEEccCCCCccccCCceEEecC
Confidence 3468888875432 1 111112111111222223 56777777754 568899988875421 111111
Q ss_pred CCcCeeEEEE--CC-EEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE--CC
Q 043540 266 ARKMCSGVFM--DG-KFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV--NN 340 (437)
Q Consensus 266 ~r~~~~~~~~--~g-~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 340 (437)
.......+.+ ++ .+++.|+.+ ..+..||+.+++....-... .... . ...+.+ ++
T Consensus 130 h~~~v~~~~~~p~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~-~~~~---~----------v~~~~~~~~~ 188 (402)
T 2aq5_A 130 HTKRVGIVAWHPTAQNVLLSAGCD-------NVILVWDVGTGAAVLTLGPD-VHPD---T----------IYSVDWSRDG 188 (402)
T ss_dssp CSSCEEEEEECSSBTTEEEEEETT-------SCEEEEETTTTEEEEEECTT-TCCS---C----------EEEEEECTTS
T ss_pred CCCeEEEEEECcCCCCEEEEEcCC-------CEEEEEECCCCCccEEEecC-CCCC---c----------eEEEEECCCC
Confidence 1222223333 44 577777665 24889999887653321101 0111 0 112222 67
Q ss_pred EEEEEeCCCCeEEEEeCCCCcEE
Q 043540 341 ELYAADHEKEEVRKFDKGRKLWR 363 (437)
Q Consensus 341 ~ly~~gg~~~~v~~yd~~~~~W~ 363 (437)
.+++.++..+.|.+||+.+.+-.
T Consensus 189 ~~l~~~~~d~~i~iwd~~~~~~~ 211 (402)
T 2aq5_A 189 ALICTSCRDKRVRVIEPRKGTVV 211 (402)
T ss_dssp SCEEEEETTSEEEEEETTTTEEE
T ss_pred CEEEEEecCCcEEEEeCCCCcee
Confidence 77777777889999999887644
No 149
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=95.44 E-value=0.11 Score=48.50 Aligned_cols=195 Identities=9% Similarity=0.088 Sum_probs=93.6
Q ss_pred CCEEEEEcCccCCceEEEEECCC--CceecCCCCCCCccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEe
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLT--NTWSTGMTMNTPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMP 259 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t--~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 259 (437)
++..++.|+. ...+.+||..+ ..++.+..+.........+.+ ++.+++.|+.+ ..+.++|..++.|+.
T Consensus 118 ~g~~las~s~--D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D------~~i~iW~~~~~~~~~ 189 (330)
T 2hes_X 118 DGYYLATCSR--DKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYD------DTVRIWKDYDDDWEC 189 (330)
T ss_dssp TSCEEEEEET--TSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETT------SCEEEEEEETTEEEE
T ss_pred CCCEEEEEeC--CCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCC------CeEEEEECCCCCeeE
Confidence 4555555543 34578888743 233332222211111222222 56677777764 457778887777766
Q ss_pred cCCCCcCCcCeeEEEE--C--CEEEEEecccCCCCccCCeEEEEECCCC------ceEecCCCCCcccCCCCcccccccC
Q 043540 260 ISSMHKARKMCSGVFM--D--GKFYVIGGIGEGSSAMLTDVEMYDLETG------KWTQITDMFPARIGSDGVSVISAAG 329 (437)
Q Consensus 260 ~~~~~~~r~~~~~~~~--~--g~lyv~GG~~~~~~~~~~~v~~yd~~~~------~W~~~~~~~~~~~~~~~~~~~~~~~ 329 (437)
+..+.........+.+ + +.+.+.|+.+ ..+..||+.+. .|.....++..... .
T Consensus 190 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D-------~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~---~------- 252 (330)
T 2hes_X 190 VAVLNGHEGTVWSSDFDKTEGVFRLCSGSDD-------STVRVWKYMGDDEDDQQEWVCEAILPDVHKR---Q------- 252 (330)
T ss_dssp EEEECCCSSCEEEEEECCSSSSCEEEEEETT-------SCEEEEEEEEECTTSCEEEEEEEECCSCCSS---C-------
T ss_pred EEEccCCCCcEEEEEecCCCCeeEEEEEeCC-------CeEEEEEecCCCccccceeEEeeeccccccc---c-------
Confidence 5544432222223333 2 4455666654 23566665432 35444333321111 0
Q ss_pred CCCCEEEEECCEEEEEeCCCCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEe-CCEEEEEcCCCCCCCCeeEEEee
Q 043540 330 EAPPLLAVVNNELYAADHEKEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRAC-GDQLIVIGGPRDSGGGIVELNGW 408 (437)
Q Consensus 330 ~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~-~~~l~v~GG~~~~~~~~~~~~~~ 408 (437)
...++...+.+++.++..+.|.+||..++.|..+...........-...++... ++++++.||.+ ..+.+|
T Consensus 253 --v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~D------g~v~~W 324 (330)
T 2hes_X 253 --VYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDD------GIVNFW 324 (330)
T ss_dssp --EEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETT------SEEEEE
T ss_pred --eEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCC------CcEEEE
Confidence 012233345556666677789999999888876543211111000011222122 45677777754 246677
Q ss_pred ecC
Q 043540 409 VPD 411 (437)
Q Consensus 409 ~~d 411 (437)
..+
T Consensus 325 ~~~ 327 (330)
T 2hes_X 325 SLE 327 (330)
T ss_dssp EC-
T ss_pred Eec
Confidence 653
No 150
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=95.44 E-value=2.6 Score=42.68 Aligned_cols=118 Identities=16% Similarity=0.173 Sum_probs=72.1
Q ss_pred EEeCCEEEEEcCccCCceEEEEEC-CCC--ceecCCCCCCC--------ccceeeEEECCEEEEEeccCCCCCCCceEEE
Q 043540 181 LAVGTELLVFGKEVHGNAIYRYNL-LTN--TWSTGMTMNTP--------RCLFGSASLGEIAILAGGCDPRGKLLKSAEL 249 (437)
Q Consensus 181 ~~~~~~lyv~GG~~~~~~v~~yd~-~t~--~W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 249 (437)
+..++.||+.... ...++.+|. .|+ .|+.-...... ....+.++.+++||+... ...+..
T Consensus 59 ~v~~g~vyv~~~~--~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------dg~l~a 129 (571)
T 2ad6_A 59 LVIGDMMYVHSAF--PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-------NGHLLA 129 (571)
T ss_dssp EEETTEEEEECST--TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------TSEEEE
T ss_pred EEECCEEEEEeCC--CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC-------CCEEEE
Confidence 6679999998631 357999999 776 48764332211 111245667899988743 256899
Q ss_pred EECCCCc--EEec-CCCCcC-CcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCc--eEec
Q 043540 250 YNSITGT--WMPI-SSMHKA-RKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGK--WTQI 309 (437)
Q Consensus 250 yd~~t~~--W~~~-~~~~~~-r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~~ 309 (437)
+|..|++ |+.- ...+.. ....+.++.++++|+..+.. .......+..||+++++ |+.-
T Consensus 130 lD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~--~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 130 LDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGA--ELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp EETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCG--GGTCCCEEEEEETTTCCEEEEEE
T ss_pred EECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCC--ccCCCCEEEEEECCCCcEEEEEc
Confidence 9999886 8753 221111 12233456799998864321 01123469999998765 8654
No 151
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=95.43 E-value=2 Score=41.38 Aligned_cols=194 Identities=13% Similarity=-0.009 Sum_probs=99.8
Q ss_pred ceEEEeccCCCCeeeCCCCCCccccccCCceeEE-eCCEEEEEcCccCCceEEEEECCCCce-ecCCCCC--CCccceee
Q 043540 149 KEWEAFDPIHHRWMHLPPMNASDCFMCADKESLA-VGTELLVFGKEVHGNAIYRYNLLTNTW-STGMTMN--TPRCLFGS 224 (437)
Q Consensus 149 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~v~~yd~~t~~W-~~~~~~~--~~r~~~~~ 224 (437)
..+..+|+.+++-..+.......+ .+ +. -++.||+.... ....++++++.++.- +.+.... ....-+++
T Consensus 152 ~~I~~id~~~g~~~~~~~~~~~~~-ia-----~~~~g~~l~~~d~~-~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~i 224 (409)
T 3hrp_A 152 PRVRLISVDDNKVTTVHPGFKGGK-PA-----VTKDKQRVYSIGWE-GTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAV 224 (409)
T ss_dssp TEEEEEETTTTEEEEEEETCCBCB-CE-----ECTTSSEEEEEBSS-TTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBC
T ss_pred CcEEEEECCCCEEEEeeccCCCCc-ee-----EecCCCcEEEEecC-CCceEEEEEcCCCceeEEeeeccchhcCCcEEE
Confidence 567888988766544322211111 11 22 24456766422 122789999875432 2331111 11222334
Q ss_pred EEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecC---CCCcCCcC-e-eEEEE--CCEEEEEecccCCCCccCCe
Q 043540 225 ASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPIS---SMHKARKM-C-SGVFM--DGKFYVIGGIGEGSSAMLTD 295 (437)
Q Consensus 225 ~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~---~~~~~r~~-~-~~~~~--~g~lyv~GG~~~~~~~~~~~ 295 (437)
++. ++.||+... ...+.+||+.+..-..+. ........ . ..++. ++.||+..... +.
T Consensus 225 av~p~~g~lyv~d~-------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~-------~~ 290 (409)
T 3hrp_A 225 ALDETEEWLYFVDS-------NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL-------SS 290 (409)
T ss_dssp EECTTSSEEEEECT-------TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT-------TE
T ss_pred EEeCCCCeEEEEEC-------CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC-------CE
Confidence 443 678999422 257999999988755541 11111222 2 44444 58999985432 46
Q ss_pred EEEEECCCCceEecCCC-CCcccCCCCcccccccCCCCCEEEEE-CCEEEEEeC-CCCeEEEEeCCCCcEEEcc
Q 043540 296 VEMYDLETGKWTQITDM-FPARIGSDGVSVISAAGEAPPLLAVV-NNELYAADH-EKEEVRKFDKGRKLWRTLG 366 (437)
Q Consensus 296 v~~yd~~~~~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ly~~gg-~~~~v~~yd~~~~~W~~v~ 366 (437)
+.+||+....-...... ...... + .........+..+++. +|.||+.+. ....|.++|+.+..-..+.
T Consensus 291 I~~~~~~g~~~~~~g~~~~~g~~d--g-~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 291 VYKITPDGECEWFCGSATQKTVQD--G-LREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA 361 (409)
T ss_dssp EEEECTTCCEEEEEECTTCCSCBC--E-EGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE
T ss_pred EEEEecCCCEEEEEeCCCCCCcCC--C-cccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe
Confidence 88998876522222211 000000 0 0000000112334443 678999998 8889999997777766554
No 152
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=95.41 E-value=0.77 Score=43.23 Aligned_cols=111 Identities=13% Similarity=0.052 Sum_probs=57.8
Q ss_pred CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCC-CcC---CcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEEC
Q 043540 228 GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSM-HKA---RKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDL 301 (437)
Q Consensus 228 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~-~~~---r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~ 301 (437)
++ ++++|+.+ ..+.+||..+.+-...-.. ... ......+.+ ++++++.|+.+ .....+..||+
T Consensus 197 ~~-~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d----~~~g~i~i~d~ 265 (397)
T 1sq9_A 197 RG-LIATGFNN------GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS----NSFGCITLYET 265 (397)
T ss_dssp TS-EEEEECTT------SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEE----TTEEEEEEEET
T ss_pred Cc-eEEEEeCC------CcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecC----CCCceEEEEEC
Confidence 45 66666543 5688999987754322111 001 222223333 67777776643 01135889998
Q ss_pred CCCceEe-cCCCC-Cc--------ccCCCCcccccccCCCCCEEEEE--CCEEEEEeCCCCeEEEEeCCCCcE
Q 043540 302 ETGKWTQ-ITDMF-PA--------RIGSDGVSVISAAGEAPPLLAVV--NNELYAADHEKEEVRKFDKGRKLW 362 (437)
Q Consensus 302 ~~~~W~~-~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~--~~~ly~~gg~~~~v~~yd~~~~~W 362 (437)
.+.+-.. +.... .. ... .-..+.+ ++++++.|+..+.|.+||..+.+-
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 325 (397)
T 1sq9_A 266 EFGERIGSLSVPTHSSQASLGEFAHSS-------------WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER 325 (397)
T ss_dssp TTCCEEEEECBC--------CCBSBSS-------------CEEEEEECSSSSEEEEEETTSEEEEEETTTTEE
T ss_pred CCCcccceeccCcccccccccccccCC-------------cEEEEEECCCCCEEEEEeCCCeEEEEEcCCCce
Confidence 8764322 11100 00 011 0112222 577777777788899999987654
No 153
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=95.40 E-value=1.7 Score=40.25 Aligned_cols=156 Identities=10% Similarity=0.037 Sum_probs=87.9
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCC-------CCCcc-ceeeEEE-C-CEEEEEeccCCCCCCCceEEEEECC
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTM-------NTPRC-LFGSASL-G-EIAILAGGCDPRGKLLKSAELYNSI 253 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~-------~~~r~-~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~yd~~ 253 (437)
++.||+..+. ..+.+.+||+....-..+... +.... -.++++- + +.|||.... ...+.+||+.
T Consensus 154 ~g~lyv~d~~-~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~------~~~I~~~~~~ 226 (329)
T 3fvz_A 154 TGAVFVSDGY-CNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE------NGRIQCFKTD 226 (329)
T ss_dssp TCCEEEEECS-SCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT------TTEEEEEETT
T ss_pred CCeEEEEeCC-CCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC------CCEEEEEECC
Confidence 6889998631 245788999644333333210 11111 1234443 3 799998643 2679999999
Q ss_pred CCcEEecCCCC-cCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEec-CCCCCcccCCCCcccccccCCC
Q 043540 254 TGTWMPISSMH-KARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQI-TDMFPARIGSDGVSVISAAGEA 331 (437)
Q Consensus 254 t~~W~~~~~~~-~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~ 331 (437)
+++....-..+ ........++..+.+|+..|...-.......+..+|+.+++.... .........
T Consensus 227 ~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~------------- 293 (329)
T 3fvz_A 227 TKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDM------------- 293 (329)
T ss_dssp TCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSS-------------
T ss_pred CCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCC-------------
Confidence 77764432222 222223344455777777664311223345689999888876543 211111111
Q ss_pred CCEEEE-ECCEEEEEeCCCCeEEEEeCCC
Q 043540 332 PPLLAV-VNNELYAADHEKEEVRKFDKGR 359 (437)
Q Consensus 332 ~~~~~~-~~~~ly~~gg~~~~v~~yd~~~ 359 (437)
+..+++ -+|.||+.+...+.|++|++..
T Consensus 294 p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 294 PHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred eeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 123333 3679999988888999998753
No 154
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=95.38 E-value=0.13 Score=47.60 Aligned_cols=153 Identities=12% Similarity=0.036 Sum_probs=84.1
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEE-CCEEEEEeccCCCCCCCceEEEEECCCCcEEec-C
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL-GEIAILAGGCDPRGKLLKSAELYNSITGTWMPI-S 261 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~-~ 261 (437)
++.||+.+.. ...+++||+.+++.+.+.... ...-.+++.- ++++|+....+.. ....+.+||+.++.-+.+ .
T Consensus 55 ~g~l~~~~~~--~~~i~~~d~~~~~~~~~~~~~-~~~~~~i~~~~dg~l~v~~~~~~~--~~~~i~~~d~~~~~~~~~~~ 129 (333)
T 2dg1_A 55 QGQLFLLDVF--EGNIFKINPETKEIKRPFVSH-KANPAAIKIHKDGRLFVCYLGDFK--STGGIFAATENGDNLQDIIE 129 (333)
T ss_dssp TSCEEEEETT--TCEEEEECTTTCCEEEEEECS-SSSEEEEEECTTSCEEEEECTTSS--SCCEEEEECTTSCSCEEEEC
T ss_pred CCCEEEEECC--CCEEEEEeCCCCcEEEEeeCC-CCCcceEEECCCCcEEEEeCCCCC--CCceEEEEeCCCCEEEEEEc
Confidence 5678877532 347999999988877643111 1112233332 5678887542211 125789999998876532 2
Q ss_pred CCCcCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE-
Q 043540 262 SMHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV- 338 (437)
Q Consensus 262 ~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 338 (437)
..... .....+.+ +|++|+..... ........++.||+.+++...+.. .... +..++..
T Consensus 130 ~~~~~-~~~~~i~~d~~g~l~v~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~---~~~~-------------~~~i~~~~ 191 (333)
T 2dg1_A 130 DLSTA-YCIDDMVFDSKGGFYFTDFRG-YSTNPLGGVYYVSPDFRTVTPIIQ---NISV-------------ANGIALST 191 (333)
T ss_dssp SSSSC-CCEEEEEECTTSCEEEEECCC-BTTBCCEEEEEECTTSCCEEEEEE---EESS-------------EEEEEECT
T ss_pred cCccC-CcccceEECCCCCEEEEeccc-cccCCCceEEEEeCCCCEEEEeec---CCCc-------------ccceEECC
Confidence 22111 12222333 68888865321 011123468899988776665421 0001 0123332
Q ss_pred CC-EEEEEeCCCCeEEEEeCCC
Q 043540 339 NN-ELYAADHEKEEVRKFDKGR 359 (437)
Q Consensus 339 ~~-~ly~~gg~~~~v~~yd~~~ 359 (437)
++ .||+.+...+.|++||..+
T Consensus 192 dg~~l~v~~~~~~~i~~~d~~~ 213 (333)
T 2dg1_A 192 DEKVLWVTETTANRLHRIALED 213 (333)
T ss_dssp TSSEEEEEEGGGTEEEEEEECT
T ss_pred CCCEEEEEeCCCCeEEEEEecC
Confidence 44 5888876567899999864
No 155
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=95.38 E-value=0.29 Score=45.28 Aligned_cols=151 Identities=9% Similarity=0.079 Sum_probs=77.7
Q ss_pred EEEEEcCcc-CCceEEEEECCCCceecCCCCCCCccceeeEEE-C---CEEEEEeccCCCCCCCceEEEEECCCCc--EE
Q 043540 186 ELLVFGKEV-HGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL-G---EIAILAGGCDPRGKLLKSAELYNSITGT--WM 258 (437)
Q Consensus 186 ~lyv~GG~~-~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~---~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~ 258 (437)
.+++.|+.. ....+.+||..+++............-.+++.. + +.+++.|+.+ ..+.+||..++. -.
T Consensus 32 ~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~ 105 (357)
T 3i2n_A 32 KFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG------GNLHIWNLEAPEMPVY 105 (357)
T ss_dssp EEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT------SCEEEECTTSCSSCSE
T ss_pred eEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC------CeEEEEeCCCCCccEE
Confidence 555555431 245788899888776543222111111122222 2 4666777654 457888888764 11
Q ss_pred ecCCCCcCCcCeeEE--------EECCEEEEEecccCCCCccCCeEEEEECCCCc--eEecCCCCCcccCCCCccccccc
Q 043540 259 PISSMHKARKMCSGV--------FMDGKFYVIGGIGEGSSAMLTDVEMYDLETGK--WTQITDMFPARIGSDGVSVISAA 328 (437)
Q Consensus 259 ~~~~~~~~r~~~~~~--------~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~ 328 (437)
.+. ........+ .-++++++.|+.+ ..+..||+.+.. ...+..........
T Consensus 106 ~~~---~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d-------~~i~vwd~~~~~~~~~~~~~~~~~~~~~--------- 166 (357)
T 3i2n_A 106 SVK---GHKEIINAIDGIGGLGIGEGAPEIVTGSRD-------GTVKVWDPRQKDDPVANMEPVQGENKRD--------- 166 (357)
T ss_dssp EEC---CCSSCEEEEEEESGGGCC-CCCEEEEEETT-------SCEEEECTTSCSSCSEEECCCTTSCCCC---------
T ss_pred EEE---ecccceEEEeeccccccCCCccEEEEEeCC-------CeEEEEeCCCCCCcceeccccCCCCCCc---------
Confidence 111 111111111 1356677777654 248889988764 33332211111110
Q ss_pred CCCCCEEE-----EECCEEEEEeCCCCeEEEEeCCCCcEEE
Q 043540 329 GEAPPLLA-----VVNNELYAADHEKEEVRKFDKGRKLWRT 364 (437)
Q Consensus 329 ~~~~~~~~-----~~~~~ly~~gg~~~~v~~yd~~~~~W~~ 364 (437)
...++ .-++.+++.|+..+.|.+||..+.+-..
T Consensus 167 ---v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 204 (357)
T 3i2n_A 167 ---CWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW 204 (357)
T ss_dssp ---EEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE
T ss_pred ---eEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee
Confidence 01111 1367788888777899999998876443
No 156
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=95.37 E-value=3.1 Score=43.16 Aligned_cols=117 Identities=20% Similarity=0.210 Sum_probs=72.6
Q ss_pred EEeCCEEEEEcCccCCceEEEEECCCCc--eecCCCCCCC--------ccceeeEEECCEEEEEeccCCCCCCCceEEEE
Q 043540 181 LAVGTELLVFGKEVHGNAIYRYNLLTNT--WSTGMTMNTP--------RCLFGSASLGEIAILAGGCDPRGKLLKSAELY 250 (437)
Q Consensus 181 ~~~~~~lyv~GG~~~~~~v~~yd~~t~~--W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y 250 (437)
++.++.||+... ...++.+|..|++ |+.-...+.. ....+.++.+++||+... ...+..+
T Consensus 67 ~v~~g~vyv~~~---~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~-------dg~l~Al 136 (689)
T 1yiq_A 67 IVVDGVMYTTGP---FSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL-------DGRLEAI 136 (689)
T ss_dssp EEETTEEEEECG---GGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------TSEEEEE
T ss_pred EEECCEEEEEcC---CCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc-------CCEEEEE
Confidence 567999999763 3468999998764 8754332211 011234567888888642 2568999
Q ss_pred ECCCCc--EEecCC-CCc--CCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCc--eEec
Q 043540 251 NSITGT--WMPISS-MHK--ARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGK--WTQI 309 (437)
Q Consensus 251 d~~t~~--W~~~~~-~~~--~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~~ 309 (437)
|.+|++ |+.-.. -+. .....+-++.++++|+..+.. .......+..||..+++ |+.-
T Consensus 137 Da~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~--~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 137 DAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGA--EFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp ETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCT--TTCCBCEEEEEETTTCCEEEEEE
T ss_pred ECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCC--ccCCCCEEEEEECCCCcEEEEec
Confidence 999887 876543 111 112234456799998843321 11123469999999876 8754
No 157
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=95.35 E-value=0.62 Score=43.10 Aligned_cols=148 Identities=11% Similarity=0.038 Sum_probs=69.9
Q ss_pred cEEEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCcc---CCceEEEEECCCCce----ecC
Q 043540 140 HWVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEV---HGNAIYRYNLLTNTW----STG 212 (437)
Q Consensus 140 ~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~---~~~~v~~yd~~t~~W----~~~ 212 (437)
.+++.......+..||..+.+-...-..+.+... ....-++..++.++.. ....+.+||..+..- ...
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~ 161 (369)
T 3zwl_B 87 KYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKR-----VEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKV 161 (369)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECSSCEEE-----EEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEE-----EEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccc
Confidence 4455555556788888887765432221111110 0112234444444321 124677777755431 111
Q ss_pred CCCC-----CCc--cceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCC-cEEecCCCCcCCcCeeEEEE--CCEEE
Q 043540 213 MTMN-----TPR--CLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITG-TWMPISSMHKARKMCSGVFM--DGKFY 280 (437)
Q Consensus 213 ~~~~-----~~r--~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~~~~~~r~~~~~~~~--~g~ly 280 (437)
...+ ... .......+ ++..+++|+.+ ..+.+||..++ .-. ..+.........+.+ +++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l 233 (369)
T 3zwl_B 162 SEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD------GKISKYDVSNNYEYV--DSIDLHEKSISDMQFSPDLTYF 233 (369)
T ss_dssp CSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETT------SEEEEEETTTTTEEE--EEEECCSSCEEEEEECTTSSEE
T ss_pred ccceeeeccCCcCccceeEEEEcCCCCEEEEEcCC------CEEEEEECCCCcEeE--EEEecCCCceeEEEECCCCCEE
Confidence 1100 000 02222222 45566666643 56889999873 321 111111222223333 67777
Q ss_pred EEecccCCCCccCCeEEEEECCCCceE
Q 043540 281 VIGGIGEGSSAMLTDVEMYDLETGKWT 307 (437)
Q Consensus 281 v~GG~~~~~~~~~~~v~~yd~~~~~W~ 307 (437)
+.++.+ ..+..||+.+.+-.
T Consensus 234 ~~~~~d-------~~i~v~d~~~~~~~ 253 (369)
T 3zwl_B 234 ITSSRD-------TNSFLVDVSTLQVL 253 (369)
T ss_dssp EEEETT-------SEEEEEETTTCCEE
T ss_pred EEecCC-------ceEEEEECCCCcee
Confidence 776654 35889999876543
No 158
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=95.31 E-value=0.52 Score=45.34 Aligned_cols=147 Identities=15% Similarity=0.183 Sum_probs=78.4
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecC
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPIS 261 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 261 (437)
.+.+++.|+. ...+.+||..+++.... +.........+.+ ++.+++.|+.+ ..+.+||..+..-. .
T Consensus 119 ~~~~l~s~s~--Dg~i~vwd~~~~~~~~~--l~~h~~~V~~v~~~~~~~~l~sgs~D------~~i~iwd~~~~~~~--~ 186 (410)
T 1vyh_C 119 VFSVMVSASE--DATIKVWDYETGDFERT--LKGHTDSVQDISFDHSGKLLASCSAD------MTIKLWDFQGFECI--R 186 (410)
T ss_dssp SSSEEEEEES--SSCEEEEETTTCCCCEE--ECCCSSCEEEEEECTTSSEEEEEETT------SCCCEEETTSSCEE--E
T ss_pred CCCEEEEEeC--CCeEEEEECCCCcEEEE--EeccCCcEEEEEEcCCCCEEEEEeCC------CeEEEEeCCCCcee--E
Confidence 3455566643 34688899887654321 1111111122222 56777777765 34567888765432 2
Q ss_pred CCCcCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEE-EE
Q 043540 262 SMHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLA-VV 338 (437)
Q Consensus 262 ~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 338 (437)
.+.........+.+ ++..++.|+.+ ..+..||+.++.-...- .+|...+ ..+. .-
T Consensus 187 ~~~~h~~~V~~v~~~p~~~~l~s~s~D-------~~i~~wd~~~~~~~~~~------~~h~~~v---------~~~~~~~ 244 (410)
T 1vyh_C 187 TMHGHDHNVSSVSIMPNGDHIVSASRD-------KTIKMWEVQTGYCVKTF------TGHREWV---------RMVRPNQ 244 (410)
T ss_dssp CCCCCSSCEEEEEECSSSSEEEEEETT-------SEEEEEETTTCCEEEEE------ECCSSCE---------EEEEECT
T ss_pred EEcCCCCCEEEEEEeCCCCEEEEEeCC-------CeEEEEECCCCcEEEEE------eCCCccE---------EEEEECC
Confidence 22222222333333 56777777765 35889999876532211 0110000 1111 12
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCcEEE
Q 043540 339 NNELYAADHEKEEVRKFDKGRKLWRT 364 (437)
Q Consensus 339 ~~~ly~~gg~~~~v~~yd~~~~~W~~ 364 (437)
++.+++.|+..+.|.+||..+.....
T Consensus 245 ~g~~l~s~s~D~~v~vwd~~~~~~~~ 270 (410)
T 1vyh_C 245 DGTLIASCSNDQTVRVWVVATKECKA 270 (410)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCceee
Confidence 57777888777889999998876543
No 159
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=95.26 E-value=1.1 Score=41.28 Aligned_cols=221 Identities=10% Similarity=0.014 Sum_probs=112.5
Q ss_pred EEEEEecCceEEEeccCCCCeeeCCCCCCc------------c--ccccCCceeEEe--CCEEEEEcCccCCceEEEEEC
Q 043540 141 WVYFSCKLKEWEAFDPIHHRWMHLPPMNAS------------D--CFMCADKESLAV--GTELLVFGKEVHGNAIYRYNL 204 (437)
Q Consensus 141 ~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~------------~--~~~~~~~~~~~~--~~~lyv~GG~~~~~~v~~yd~ 204 (437)
.+|+......+..||+.++++..+...... . .....-..++.. ++.|||... ...+.++|+
T Consensus 32 ~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~---~~~i~~~d~ 108 (322)
T 2fp8_A 32 GFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC---YYHLSVVGS 108 (322)
T ss_dssp SEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET---TTEEEEECT
T ss_pred EEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC---CCCEEEEeC
Confidence 355555556788999988776543211000 0 000000122333 578988732 134888998
Q ss_pred CCCceecCCCCCC--C-ccceeeEEE--CCEEEEEeccCCC-----------CCCCceEEEEECCCCcEEecCC-CCcCC
Q 043540 205 LTNTWSTGMTMNT--P-RCLFGSASL--GEIAILAGGCDPR-----------GKLLKSAELYNSITGTWMPISS-MHKAR 267 (437)
Q Consensus 205 ~t~~W~~~~~~~~--~-r~~~~~~~~--~~~iyv~GG~~~~-----------~~~~~~~~~yd~~t~~W~~~~~-~~~~r 267 (437)
.++..+.+..... + .....+++- ++.||+.-..... ......+++||+.+++.+.+.. +.
T Consensus 109 ~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~--- 185 (322)
T 2fp8_A 109 EGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELH--- 185 (322)
T ss_dssp TCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEES---
T ss_pred CCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCc---
Confidence 8776655432111 1 111223333 5689987432100 0123578999998887654421 11
Q ss_pred cCeeEEEE-CC-EEEEEecccCCCCccCCeEEEEECCCC---ceEecCCCCCcccCCCCcccccccCCCCCEEEE-ECCE
Q 043540 268 KMCSGVFM-DG-KFYVIGGIGEGSSAMLTDVEMYDLETG---KWTQITDMFPARIGSDGVSVISAAGEAPPLLAV-VNNE 341 (437)
Q Consensus 268 ~~~~~~~~-~g-~lyv~GG~~~~~~~~~~~v~~yd~~~~---~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 341 (437)
.....++- +| .|||.-.. ...+.+||+... ..+.+..++. +..+++ -+|.
T Consensus 186 ~p~gia~~~dg~~lyv~d~~-------~~~I~~~~~~~~~~~~~~~~~~~~g-----------------P~gi~~d~~G~ 241 (322)
T 2fp8_A 186 VPGGAEVSADSSFVLVAEFL-------SHQIVKYWLEGPKKGTAEVLVKIPN-----------------PGNIKRNADGH 241 (322)
T ss_dssp CCCEEEECTTSSEEEEEEGG-------GTEEEEEESSSTTTTCEEEEEECSS-----------------EEEEEECTTSC
T ss_pred cCcceEECCCCCEEEEEeCC-------CCeEEEEECCCCcCCccceEEeCCC-----------------CCCeEECCCCC
Confidence 11222332 44 48887432 246899998753 3333222211 123333 3578
Q ss_pred EEEEeCC----------CCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcC
Q 043540 342 LYAADHE----------KEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGG 394 (437)
Q Consensus 342 ly~~gg~----------~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG 394 (437)
||+.... ...|.+||+..+.-..+. .|.... .. ...+++..+++|||.+.
T Consensus 242 l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~-~~~g~~-~~-~~~~~~~~~g~L~v~~~ 301 (322)
T 2fp8_A 242 FWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIP-LPPPFA-GE-HFEQIQEHDGLLYIGTL 301 (322)
T ss_dssp EEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEE-CCTTTT-TS-CCCEEEEETTEEEEECS
T ss_pred EEEEecCcccccccCCCccEEEEECCCCCEEEEEE-CCCCCc-cc-cceEEEEeCCEEEEeec
Confidence 9988643 457999999755444443 232110 00 12233446889999864
No 160
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=95.23 E-value=0.91 Score=43.22 Aligned_cols=228 Identities=16% Similarity=0.181 Sum_probs=105.8
Q ss_pred cEEEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEE--eCCEEEEEcCccCCceEEEEECCCCceecCCCCCC
Q 043540 140 HWVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLA--VGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNT 217 (437)
Q Consensus 140 ~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~ 217 (437)
.+++.......+..||..+.+-... +...... . ..+. -++..++.|+. ...+.+||..+++....-...
T Consensus 136 ~~l~s~~~d~~i~iwd~~~~~~~~~--~~~h~~~--v--~~~~~~p~~~~l~s~s~--d~~v~iwd~~~~~~~~~~~~~- 206 (393)
T 1erj_A 136 KFLATGAEDRLIRIWDIENRKIVMI--LQGHEQD--I--YSLDYFPSGDKLVSGSG--DRTVRIWDLRTGQCSLTLSIE- 206 (393)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEE--ECCCSSC--E--EEEEECTTSSEEEEEET--TSEEEEEETTTTEEEEEEECS-
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEE--EccCCCC--E--EEEEEcCCCCEEEEecC--CCcEEEEECCCCeeEEEEEcC-
Confidence 4455545556778888877654321 1100000 0 0111 13444455543 346888999887643321111
Q ss_pred CccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEe-cCCC----CcCCcCeeEEEE--CCEEEEEecccCC
Q 043540 218 PRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMP-ISSM----HKARKMCSGVFM--DGKFYVIGGIGEG 288 (437)
Q Consensus 218 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~----~~~r~~~~~~~~--~g~lyv~GG~~~~ 288 (437)
.....++.. ++.+++.|+.+ ..+.+||..++.-.. +... .........+.+ ++++.+.|+.+
T Consensus 207 -~~v~~~~~~~~~~~~l~~~s~d------~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d-- 277 (393)
T 1erj_A 207 -DGVTTVAVSPGDGKYIAAGSLD------RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD-- 277 (393)
T ss_dssp -SCEEEEEECSTTCCEEEEEETT------SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT--
T ss_pred -CCcEEEEEECCCCCEEEEEcCC------CcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCC--
Confidence 111122222 56777777754 457889998876432 2111 111112223333 67777777765
Q ss_pred CCccCCeEEEEECCCCceEecCCCCC------cccCCCCcccccccCCCCCEEEE-ECCEEEEEeCCCCeEEEEeCCCCc
Q 043540 289 SSAMLTDVEMYDLETGKWTQITDMFP------ARIGSDGVSVISAAGEAPPLLAV-VNNELYAADHEKEEVRKFDKGRKL 361 (437)
Q Consensus 289 ~~~~~~~v~~yd~~~~~W~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~~~v~~yd~~~~~ 361 (437)
..+..||+.+..-......+. ...+|... ...++. -++..++.|+..+.|.+||..+.+
T Consensus 278 -----~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~---------v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~ 343 (393)
T 1erj_A 278 -----RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF---------VLSVATTQNDEYILSGSKDRGVLFWDKKSGN 343 (393)
T ss_dssp -----SEEEEEEC---------------CEEEEEECCSSC---------EEEEEECGGGCEEEEEETTSEEEEEETTTCC
T ss_pred -----CEEEEEECCCCCCcccccCCCCCcceEEEecccCc---------EEEEEECCCCCEEEEEeCCCeEEEEECCCCe
Confidence 357888887543211100000 00111000 011222 256666777777889999998765
Q ss_pred EEEccCCCCcccCCCcccEEEEEe-------CCEEEEEcCCCCCCCCeeEEEeeecC
Q 043540 362 WRTLGRLPEQASSMNGWGLAFRAC-------GDQLIVIGGPRDSGGGIVELNGWVPD 411 (437)
Q Consensus 362 W~~v~~lp~~~~~~~~~~~a~~~~-------~~~l~v~GG~~~~~~~~~~~~~~~~d 411 (437)
-... +.... ..-.++... ++.+++.||.+ ..+.+|.+.
T Consensus 344 ~~~~--l~~h~----~~v~~v~~~~~~~~~p~~~~l~sgs~D------g~i~iW~~~ 388 (393)
T 1erj_A 344 PLLM--LQGHR----NSVISVAVANGSSLGPEYNVFATGSGD------CKARIWKYK 388 (393)
T ss_dssp EEEE--EECCS----SCEEEEEECSSCTTCTTCEEEEEEETT------SEEEEEEEE
T ss_pred EEEE--ECCCC----CCEEEEEecCCcCcCCCCCEEEEECCC------CcEEECccc
Confidence 3321 11111 111222222 35778888755 246778764
No 161
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=95.19 E-value=0.75 Score=43.33 Aligned_cols=147 Identities=10% Similarity=0.046 Sum_probs=73.2
Q ss_pred EEEEEcCccCCceEEEEECCCCc------eecCCCCCCC---ccceeeEEE-----CCEE-EEEeccCCCCCCCceEEEE
Q 043540 186 ELLVFGKEVHGNAIYRYNLLTNT------WSTGMTMNTP---RCLFGSASL-----GEIA-ILAGGCDPRGKLLKSAELY 250 (437)
Q Consensus 186 ~lyv~GG~~~~~~v~~yd~~t~~------W~~~~~~~~~---r~~~~~~~~-----~~~i-yv~GG~~~~~~~~~~~~~y 250 (437)
.+++.|+. ...+.+||..++. +..+...+.. ..-.+++.. ++.. ++.|+.+ ..+.+|
T Consensus 82 ~~l~s~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d------g~i~iw 153 (397)
T 1sq9_A 82 CLVATTSF--SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK------GTTYIW 153 (397)
T ss_dssp EEEEEEET--TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT------SCEEEE
T ss_pred cEEEEEcC--CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC------CcEEEE
Confidence 66666643 3468888887766 6555433211 111223333 4555 6777654 456777
Q ss_pred ECCC------Cc---EEecCCC-------C-cCCcCeeEEEE-CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCC
Q 043540 251 NSIT------GT---WMPISSM-------H-KARKMCSGVFM-DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDM 312 (437)
Q Consensus 251 d~~t------~~---W~~~~~~-------~-~~r~~~~~~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~ 312 (437)
|..+ .+ |.....+ . ......++.+. ++ +++.|+.+ ..+..||+.+.+-...-..
T Consensus 154 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d-------g~i~i~d~~~~~~~~~~~~ 225 (397)
T 1sq9_A 154 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNN-------GTVQISELSTLRPLYNFES 225 (397)
T ss_dssp EEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTT-------SEEEEEETTTTEEEEEEEC
T ss_pred eCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCC-------CcEEEEECCCCceeEEEec
Confidence 7765 22 1111011 0 11112223333 56 66666654 3588999987654322111
Q ss_pred CC-c---ccCCCCcccccccCCCCCEEEE-ECCEEEEEeCCC---CeEEEEeCCCCc
Q 043540 313 FP-A---RIGSDGVSVISAAGEAPPLLAV-VNNELYAADHEK---EEVRKFDKGRKL 361 (437)
Q Consensus 313 ~~-~---~~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~---~~v~~yd~~~~~ 361 (437)
.. . ... ...++. -++++++.++.. ..|.+||..+.+
T Consensus 226 ~~~h~~~~~~-------------i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~ 269 (397)
T 1sq9_A 226 QHSMINNSNS-------------IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE 269 (397)
T ss_dssp CC---CCCCC-------------EEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC
T ss_pred cccccccCCc-------------cceEEECCCCCEEEEEecCCCCceEEEEECCCCc
Confidence 00 0 111 011222 256777777665 789999998765
No 162
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=95.18 E-value=0.66 Score=43.32 Aligned_cols=188 Identities=10% Similarity=0.065 Sum_probs=93.2
Q ss_pred EEEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCcc
Q 043540 141 WVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRC 220 (437)
Q Consensus 141 ~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~ 220 (437)
+|........+..||..+++|.....+...... ........-++..++.|+.. ..+.+||..++.+..+..+.....
T Consensus 30 ~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~g~~l~s~s~D--~~v~iw~~~~~~~~~~~~~~~h~~ 106 (345)
T 3fm0_A 30 LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQR-TVRKVAWSPCGNYLASASFD--ATTCIWKKNQDDFECVTTLEGHEN 106 (345)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEEEECSSCSS-CEEEEEECTTSSEEEEEETT--SCEEEEEECCC-EEEEEEECCCSS
T ss_pred EEEEEcCCCeEEEEEcCCCcceeeeeeccccCC-cEEEEEECCCCCEEEEEECC--CcEEEEEccCCCeEEEEEccCCCC
Confidence 344444455677788877776432111111100 00000112245556666433 356777877776654433222112
Q ss_pred ceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCc-EEecCCCCcCCcCeeEEEE--CCEEEEEecccCCCCccCCe
Q 043540 221 LFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGT-WMPISSMHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTD 295 (437)
Q Consensus 221 ~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~ 295 (437)
...++.+ ++..++.|+.+ ..+.++|..+.. +..+..+.........+.. ++++++.|+.+ ..
T Consensus 107 ~v~~v~~sp~~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d-------~~ 173 (345)
T 3fm0_A 107 EVKSVAWAPSGNLLATCSRD------KSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYD-------DT 173 (345)
T ss_dssp CEEEEEECTTSSEEEEEETT------SCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETT-------SC
T ss_pred CceEEEEeCCCCEEEEEECC------CeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCC-------Cc
Confidence 2222222 56677777754 457788876543 3333222222222233333 67777777765 24
Q ss_pred EEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEE-ECCEEEEEeCCCCeEEEEeC
Q 043540 296 VEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV-VNNELYAADHEKEEVRKFDK 357 (437)
Q Consensus 296 v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~~~v~~yd~ 357 (437)
+..||..++.|..+..+...... + ..++. -++++++.|+....|.+||.
T Consensus 174 i~~w~~~~~~~~~~~~~~~h~~~----v---------~~l~~sp~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 174 VKLYREEEDDWVCCATLEGHEST----V---------WSLAFDPSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp EEEEEEETTEEEEEEEECCCSSC----E---------EEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred EEEEEecCCCEEEEEEecCCCCc----e---------EEEEECCCCCEEEEEeCCCeEEEecc
Confidence 88899888888654332211111 0 11222 25677777777777888874
No 163
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=95.17 E-value=1.6 Score=39.83 Aligned_cols=185 Identities=10% Similarity=0.064 Sum_probs=89.4
Q ss_pred cEEEEEecCceEEEeccCCCC----eeeCCCCCCccccccCCceeEEeCCE-EEEEcCccCCceEEEEEC-CCCceecCC
Q 043540 140 HWVYFSCKLKEWEAFDPIHHR----WMHLPPMNASDCFMCADKESLAVGTE-LLVFGKEVHGNAIYRYNL-LTNTWSTGM 213 (437)
Q Consensus 140 ~~l~~~~~~~~~~~yDp~~~~----W~~l~~~p~~~~~~~~~~~~~~~~~~-lyv~GG~~~~~~v~~yd~-~t~~W~~~~ 213 (437)
.++++......+..||..+.. ...+.....+ ..+ ....-++. .++.|+. ...+.+||. .++....+.
T Consensus 24 ~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~--v~~---~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~ 96 (342)
T 1yfq_A 24 SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHP--LLC---CNFIDNTDLQIYVGTV--QGEILKVDLIGSPSFQALT 96 (342)
T ss_dssp TEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSC--EEE---EEEEESSSEEEEEEET--TSCEEEECSSSSSSEEECB
T ss_pred CEEEEEcCCCeEEEEEeCCCCccccceeeeecCCc--eEE---EEECCCCCcEEEEEcC--CCeEEEEEeccCCceEecc
Confidence 344444455667778776655 2222111110 000 11223555 5555543 346899999 887766554
Q ss_pred CCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCc-------EEecCCCCcCCcCeeEEEECCEEEEEeccc
Q 043540 214 TMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGT-------WMPISSMHKARKMCSGVFMDGKFYVIGGIG 286 (437)
Q Consensus 214 ~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-------W~~~~~~~~~r~~~~~~~~~g~lyv~GG~~ 286 (437)
..+....-.+++...+..++.|+.+ ..+.+||..+.. .+.+..+.....-.++.+..+. +++|+.+
T Consensus 97 ~~~~~~~v~~l~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-l~~~~~d 169 (342)
T 1yfq_A 97 NNEANLGICRICKYGDDKLIAASWD------GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR-LIVGMNN 169 (342)
T ss_dssp SCCCCSCEEEEEEETTTEEEEEETT------SEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE-EEEEEST
T ss_pred ccCCCCceEEEEeCCCCEEEEEcCC------CeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc-EEEEeCC
Confidence 4112222222333325555666643 567888876400 2223333322222233344455 4554443
Q ss_pred CCCCccCCeEEEEECCC-Cc--eEecCCCCCcccCCCCcccccccCCCCCEEEEE--CCEEEEEeCCCCeEEEEeCCCC
Q 043540 287 EGSSAMLTDVEMYDLET-GK--WTQITDMFPARIGSDGVSVISAAGEAPPLLAVV--NNELYAADHEKEEVRKFDKGRK 360 (437)
Q Consensus 287 ~~~~~~~~~v~~yd~~~-~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ly~~gg~~~~v~~yd~~~~ 360 (437)
..+..||+.+ .. ........... - ..++.. ++.+++.|+..+.+.+||....
T Consensus 170 -------~~i~i~d~~~~~~~~~~~~~~~~~~~-i--------------~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 170 -------SQVQWFRLPLCEDDNGTIEESGLKYQ-I--------------RDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp -------TEEEEEESSCCTTCCCEEEECSCSSC-E--------------EEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred -------CeEEEEECCccccccceeeecCCCCc-e--------------eEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence 3588999887 33 22221100000 0 123333 5678888877778888776554
No 164
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=95.14 E-value=1.7 Score=39.56 Aligned_cols=113 Identities=14% Similarity=0.131 Sum_probs=55.9
Q ss_pred EEEEEecCceEEEeccCCCCeeeCCCCCCcc-ccccCCceeEEeCC-EEEEEcCccCCceEEEEECCCCceecCCCCCCC
Q 043540 141 WVYFSCKLKEWEAFDPIHHRWMHLPPMNASD-CFMCADKESLAVGT-ELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTP 218 (437)
Q Consensus 141 ~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~-~~~~~~~~~~~~~~-~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~ 218 (437)
+++.......+..+|+.+.+-...-.++... ... ...+.-++ .+|+.+.. ...++++|+.+++-...-..+.+
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~---~~~~s~dg~~l~v~~~~--~~~v~~~d~~~~~~~~~~~~~~~ 77 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPM---VPMVAPGGRIAYATVNK--SESLVKIDLVTGETLGRIDLSTP 77 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCC---CEEECTTSSEEEEEETT--TTEEEEEETTTCCEEEEEECCBT
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCcc---ceEEcCCCCEEEEEeCC--CCeEEEEECCCCCeEeeEEcCCc
Confidence 3444455677889999877553321222200 000 01122234 67776532 35799999988765432111110
Q ss_pred ----ccceeeEEE--CCEEEEEeccC---CCCC--CCceEEEEECCCCcEE
Q 043540 219 ----RCLFGSASL--GEIAILAGGCD---PRGK--LLKSAELYNSITGTWM 258 (437)
Q Consensus 219 ----r~~~~~~~~--~~~iyv~GG~~---~~~~--~~~~~~~yd~~t~~W~ 258 (437)
.....++.- +..+|+..... .... ....+.+||..+.+..
T Consensus 78 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~ 128 (337)
T 1pby_B 78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR 128 (337)
T ss_dssp TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE
T ss_pred ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEE
Confidence 011222322 34777764210 0000 1368899999887654
No 165
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=95.14 E-value=1.5 Score=41.11 Aligned_cols=234 Identities=11% Similarity=0.083 Sum_probs=103.4
Q ss_pred EEEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCcc
Q 043540 141 WVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRC 220 (437)
Q Consensus 141 ~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~ 220 (437)
.++.......+..||..+.+-...-..+........ .....++.+++.|+. ...+.+||..+.+-.. .+.....
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~v~~~d~~~~~~~~--~~~~~~~ 187 (408)
T 4a11_B 114 MFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHM--SPVSTKHCLVAVGTR--GPKVQLCDLKSGSCSH--ILQGHRQ 187 (408)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEE--CSSCSSCCEEEEEES--SSSEEEEESSSSCCCE--EECCCCS
T ss_pred EEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEe--ecCCCCCcEEEEEcC--CCeEEEEeCCCcceee--eecCCCC
Confidence 344444456778888877654433222221110000 000113335555543 3468889987654321 1111111
Q ss_pred ceeeEEE--C-CEEEEEeccCCCCCCCceEEEEECCCCc--EEecCC------------CCcCCcCeeEEEE--CCEEEE
Q 043540 221 LFGSASL--G-EIAILAGGCDPRGKLLKSAELYNSITGT--WMPISS------------MHKARKMCSGVFM--DGKFYV 281 (437)
Q Consensus 221 ~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~------------~~~~r~~~~~~~~--~g~lyv 281 (437)
...+..+ + ..+++.|+.+ ..+.+||..+.. ...+.. ..........+.+ +++.++
T Consensus 188 ~v~~~~~~~~~~~ll~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 261 (408)
T 4a11_B 188 EILAVSWSPRYDYILATASAD------SRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLL 261 (408)
T ss_dssp CEEEEEECSSCTTEEEEEETT------SCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEE
T ss_pred cEEEEEECCCCCcEEEEEcCC------CcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEE
Confidence 1222222 2 3377777754 457888887653 222210 0111122223333 677777
Q ss_pred EecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCc
Q 043540 282 IGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKL 361 (437)
Q Consensus 282 ~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~ 361 (437)
.|+.+ ..+..||+.+.+-............ ............+..++++...+.|.+||..+.+
T Consensus 262 ~~~~d-------g~i~vwd~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 325 (408)
T 4a11_B 262 TVGTD-------NRMRLWNSSNGENTLVNYGKVCNNS---------KKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGE 325 (408)
T ss_dssp EEETT-------SCEEEEETTTCCBCCCCCCCCCCCC---------SSCCCCEECCSSSSCEEEEEETTEEEEEETTTCC
T ss_pred EecCC-------CeEEEEECCCCccceeccccccccc---------cccceeEEecCCCceEEEEecCCEEEEEECcCCc
Confidence 77654 2488999987653222110000000 0000011111223334444456788899987765
Q ss_pred EEEccCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCC
Q 043540 362 WRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEG 413 (437)
Q Consensus 362 W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~ 413 (437)
-... +....... ...++ .-++++++.|+.+. .+.+|.++..
T Consensus 326 ~~~~--~~~~~~~v--~~~~~-s~~~~~l~s~~~dg------~i~iw~~~~~ 366 (408)
T 4a11_B 326 QITM--LKGHYKTV--DCCVF-QSNFQELYSGSRDC------NILAWVPSLY 366 (408)
T ss_dssp EEEE--ECCCSSCE--EEEEE-ETTTTEEEEEETTS------CEEEEEECC-
T ss_pred ceee--eccCCCeE--EEEEE-cCCCCEEEEECCCC------eEEEEeCCCC
Confidence 4332 11111100 11222 23456677776541 3667776543
No 166
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=95.02 E-value=0.47 Score=43.37 Aligned_cols=185 Identities=8% Similarity=0.091 Sum_probs=88.6
Q ss_pred cEEEEEecCceEEEeccCCCCeee-CCCCCCccccccCCcee-EEeCCEEEEEcCccCCceEEEEECCCCceecCCCCCC
Q 043540 140 HWVYFSCKLKEWEAFDPIHHRWMH-LPPMNASDCFMCADKES-LAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNT 217 (437)
Q Consensus 140 ~~l~~~~~~~~~~~yDp~~~~W~~-l~~~p~~~~~~~~~~~~-~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~ 217 (437)
.+++.......+..||..+++-.. +..-... . ..+ ..-++.+++.|+. ...+.+||..++. .....+..
T Consensus 68 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~-----v-~~~~~~~~~~~l~sgs~--D~~v~lWd~~~~~-~~~~~~~~ 138 (304)
T 2ynn_A 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY-----I-RSIAVHPTKPYVLSGSD--DLTVKLWNWENNW-ALEQTFEG 138 (304)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECCSSC-----E-EEEEECSSSSEEEEEET--TSCEEEEEGGGTT-EEEEEECC
T ss_pred CEEEEECCCCEEEEEECCCCcEEEEEeCCCCc-----E-EEEEEcCCCCEEEEECC--CCeEEEEECCCCc-chhhhhcc
Confidence 345555555678888887765321 1110100 0 011 1124455555543 2457788876542 11111111
Q ss_pred CccceeeEEE---CCEEEEEeccCCCCCCCceEEEEECCCCc--EEecCCCCcCCcCeeEEEE----CCEEEEEecccCC
Q 043540 218 PRCLFGSASL---GEIAILAGGCDPRGKLLKSAELYNSITGT--WMPISSMHKARKMCSGVFM----DGKFYVIGGIGEG 288 (437)
Q Consensus 218 ~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~r~~~~~~~~----~g~lyv~GG~~~~ 288 (437)
......++.+ ++.+++.|+.+ ..+.+||..+.. ..... . .......+.+ ++.+.+.|+.+
T Consensus 139 h~~~v~~v~~~p~~~~~l~sgs~D------~~v~iwd~~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~~~l~s~s~D-- 207 (304)
T 2ynn_A 139 HEHFVMCVAFNPKDPSTFASGCLD------RTVKVWSLGQSTPNFTLTT--G-QERGVNYVDYYPLPDKPYMITASDD-- 207 (304)
T ss_dssp CCSCEEEEEECTTCTTEEEEEETT------SEEEEEETTCSSCSEEEEC--C-CTTCEEEEEECCSTTCCEEEEEETT--
T ss_pred cCCcEEEEEECCCCCCEEEEEeCC------CeEEEEECCCCCccceecc--C-CcCcEEEEEEEEcCCCCEEEEEcCC--
Confidence 1111222233 34677777754 568888876543 11110 0 1111122222 45666776654
Q ss_pred CCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEE-ECCEEEEEeCCCCeEEEEeCCCCcEEE
Q 043540 289 SSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV-VNNELYAADHEKEEVRKFDKGRKLWRT 364 (437)
Q Consensus 289 ~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~~~v~~yd~~~~~W~~ 364 (437)
..+..||+.+.+-.. .+...... + ..++. -++.+++.|+..+.|.+||..+.+-..
T Consensus 208 -----~~i~iWd~~~~~~~~--~~~~h~~~----v---------~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~ 264 (304)
T 2ynn_A 208 -----LTIKIWDYQTKSCVA--TLEGHMSN----V---------SFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264 (304)
T ss_dssp -----SEEEEEETTTTEEEE--EEECCSSC----E---------EEEEECSSSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred -----CeEEEEeCCCCccce--eeCCCCCC----E---------EEEEECCCCCEEEEEcCCCeEEEEECCCCceee
Confidence 358889988764221 11111001 0 11222 256677777777889999998866443
No 167
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=95.01 E-value=0.33 Score=45.69 Aligned_cols=137 Identities=12% Similarity=0.091 Sum_probs=69.9
Q ss_pred ceEEEEECCCCceecCCCC--CCCccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeE
Q 043540 197 NAIYRYNLLTNTWSTGMTM--NTPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSG 272 (437)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~--~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~ 272 (437)
..+.+||..+++-...... ..-.....++.+ +++.++.|+.+ ..+.++|..+++-.. .+.........
T Consensus 103 g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d------~~i~iwd~~~~~~~~--~~~~h~~~V~~ 174 (344)
T 4gqb_B 103 GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD------ICIKVWDLAQQVVLS--SYRAHAAQVTC 174 (344)
T ss_dssp SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEE--EECCCSSCEEE
T ss_pred CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC------CeEEEEECCCCcEEE--EEcCcCCceEE
Confidence 4688899887653221110 000111122222 56777777754 457889998875322 22221222222
Q ss_pred EEE--CC-EEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE--CCEEEEEeC
Q 043540 273 VFM--DG-KFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV--NNELYAADH 347 (437)
Q Consensus 273 ~~~--~g-~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ly~~gg 347 (437)
+.+ ++ .+++.|+.+ ..+..||+.+.+-...-........ ...++.. ++++++.|+
T Consensus 175 ~~~~~~~~~~l~s~s~D-------~~v~iwd~~~~~~~~~~~~~~~~~~-------------~~~~~~~p~~~~~l~sg~ 234 (344)
T 4gqb_B 175 VAASPHKDSVFLSCSED-------NRILLWDTRCPKPASQIGCSAPGYL-------------PTSLAWHPQQSEVFVFGD 234 (344)
T ss_dssp EEECSSCTTEEEEEETT-------SCEEEEETTSSSCEEECC----CCC-------------EEEEEECSSCTTEEEEEE
T ss_pred EEecCCCCCceeeeccc-------cccccccccccceeeeeecceeecc-------------ceeeeecCCCCcceEEec
Confidence 322 33 477777765 2488899987653322111111000 0112222 567888888
Q ss_pred CCCeEEEEeCCCCc
Q 043540 348 EKEEVRKFDKGRKL 361 (437)
Q Consensus 348 ~~~~v~~yd~~~~~ 361 (437)
..+.|.+||..+.+
T Consensus 235 ~dg~v~~wd~~~~~ 248 (344)
T 4gqb_B 235 ENGTVSLVDTKSTS 248 (344)
T ss_dssp TTSEEEEEESCC--
T ss_pred cCCcEEEEECCCCc
Confidence 78889999998754
No 168
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=94.99 E-value=1.4 Score=44.68 Aligned_cols=240 Identities=12% Similarity=0.043 Sum_probs=115.7
Q ss_pred cEEEEEe-cCceEEEeccCCCCee-eCCCCCCccccccCCceeEEe-CCEEEEEcCccCCceEEEEECCCCceecCCCCC
Q 043540 140 HWVYFSC-KLKEWEAFDPIHHRWM-HLPPMNASDCFMCADKESLAV-GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMN 216 (437)
Q Consensus 140 ~~l~~~~-~~~~~~~yDp~~~~W~-~l~~~p~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~ 216 (437)
..+|+.. ....+..+|+.+++-. .++. ....+. ..++- +..+|+.+. ...+.+||+.+.+-+.+..++
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~---g~~p~~---v~~SpDGr~lyv~~~---dg~V~viD~~~~t~~~v~~i~ 237 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVLDT---GYAVHI---SRLSASGRYLFVIGR---DGKVNMIDLWMKEPTTVAEIK 237 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEEC---SSCEEE---EEECTTSCEEEEEET---TSEEEEEETTSSSCCEEEEEE
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEEeC---CCCccc---eEECCCCCEEEEEcC---CCeEEEEECCCCCCcEeEEEe
Confidence 3455543 4578899999987654 2321 111111 11222 456787652 457999998622223333333
Q ss_pred CCccceeeEEE-----CC-EEEEEeccCCCCCCCceEEEEECCCCcEEe-cC--CCCc------CCcCeeEEE--ECCEE
Q 043540 217 TPRCLFGSASL-----GE-IAILAGGCDPRGKLLKSAELYNSITGTWMP-IS--SMHK------ARKMCSGVF--MDGKF 279 (437)
Q Consensus 217 ~~r~~~~~~~~-----~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~--~~~~------~r~~~~~~~--~~g~l 279 (437)
....-..++.- ++ .+|+..-. .+.+.++|..|.+=.. ++ .++. +....++++ .++..
T Consensus 238 ~G~~P~~ia~s~~~~pDGk~l~v~n~~------~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~ 311 (567)
T 1qks_A 238 IGSEARSIETSKMEGWEDKYAIAGAYW------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE 311 (567)
T ss_dssp CCSEEEEEEECCSTTCTTTEEEEEEEE------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSE
T ss_pred cCCCCceeEEccccCCCCCEEEEEEcc------CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCE
Confidence 32222233333 34 67776432 2677889977755322 11 1110 011122222 23333
Q ss_pred EEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEE-EECCE-EEEEeCCCCeEEEEeC
Q 043540 280 YVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLA-VVNNE-LYAADHEKEEVRKFDK 357 (437)
Q Consensus 280 yv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-ly~~gg~~~~v~~yd~ 357 (437)
+++.- .....+...|........+..++..+.. +... .-+++ +|+.....+.|.++|.
T Consensus 312 ~vv~~------~~~g~v~~vd~~~~~~~~v~~i~~~~~~--------------~d~~~~pdgr~~~va~~~sn~V~ViD~ 371 (567)
T 1qks_A 312 FIVNV------KETGKILLVDYTDLNNLKTTEISAERFL--------------HDGGLDGSHRYFITAANARNKLVVIDT 371 (567)
T ss_dssp EEEEE------TTTTEEEEEETTCSSEEEEEEEECCSSE--------------EEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred EEEEe------cCCCeEEEEecCCCccceeeeeeccccc--------------cCceECCCCCEEEEEeCCCCeEEEEEC
Confidence 33321 1224577788776654444333322222 2222 22454 4555555788999999
Q ss_pred CCCcEE---Ec-cCCCCcccCCCcccEEEEEe-CCEEEEEcCCCCCCCCeeEEEeeecCCCC---CCceecCccC
Q 043540 358 GRKLWR---TL-GRLPEQASSMNGWGLAFRAC-GDQLIVIGGPRDSGGGIVELNGWVPDEGP---PHWKLLARQP 424 (437)
Q Consensus 358 ~~~~W~---~v-~~lp~~~~~~~~~~~a~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~d~~~---~~W~~l~~~p 424 (437)
++++=. .+ +..|.+.+ |..+..- ++.+|+.+-.. . ..+.++..|+.. ..|+.+..++
T Consensus 372 ~t~kl~~~i~vgg~~Phpg~-----g~~~~~p~~g~v~~t~~~g---~--~~Vsvid~~~~~~~~~~~kvv~~i~ 436 (567)
T 1qks_A 372 KEGKLVAIEDTGGQTPHPGR-----GANFVHPTFGPVWATSHMG---D--DSVALIGTDPEGHPDNAWKILDSFP 436 (567)
T ss_dssp TTTEEEEEEECSSSSBCCTT-----CEEEEETTTEEEEEEEBSS---S--SEEEEEECCTTTCTTTBTSEEEEEE
T ss_pred CCCcEEEEEeccCcCCCCcc-----ceeeECCCCCcEEEeCCCC---C--CeEEEecCCCCCCccccCEEEEEEe
Confidence 988633 23 33344322 4443222 36777765211 1 135566555432 2488775443
No 169
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=94.89 E-value=1.6 Score=45.76 Aligned_cols=107 Identities=14% Similarity=0.061 Sum_probs=64.8
Q ss_pred CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcC-CcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCC
Q 043540 228 GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKA-RKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETG 304 (437)
Q Consensus 228 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~-r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~ 304 (437)
++.|+++||.. .-+.+||+.+++++.+..-... .....++.. +|.|++... . -+..||+.++
T Consensus 482 ~g~lWi~~~t~------~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt~-~--------Gl~~~~~~~~ 546 (758)
T 3ott_A 482 EGNVWVLLYNN------KGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGFH-G--------GVMRINPKDE 546 (758)
T ss_dssp TSCEEEEETTC------SSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEET-T--------EEEEECC--C
T ss_pred CCCEEEEccCC------CCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEec-C--------ceEEEecCCC
Confidence 56888866643 3478999999999876421111 112223333 578886432 1 2889999998
Q ss_pred ceEecC--CCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCcEEEcc
Q 043540 305 KWTQIT--DMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKLWRTLG 366 (437)
Q Consensus 305 ~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~W~~v~ 366 (437)
+++.+. .++.... .+++.-+|.|++.. .+.+.+||+++.+.....
T Consensus 547 ~~~~~~~~gl~~~~i---------------~~i~~~~g~lWi~t--~~Gl~~~~~~~~~~~~~~ 593 (758)
T 3ott_A 547 SQQSISFGSFSNNEI---------------LSMTCVKNSIWVST--TNGLWIIDRKTMDARQQN 593 (758)
T ss_dssp CCCBCCCCC---CCE---------------EEEEEETTEEEEEE--SSCEEEEETTTCCEEEC-
T ss_pred ceEEecccCCCccce---------------EEEEECCCCEEEEC--CCCeEEEcCCCceeEEec
Confidence 887653 2222111 23445588988875 456999999998877653
No 170
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=94.88 E-value=0.85 Score=44.43 Aligned_cols=201 Identities=11% Similarity=0.027 Sum_probs=97.4
Q ss_pred cEEEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEe-CCEEEEEcCc--cCCceEEEEECCCCcee---cCC
Q 043540 140 HWVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAV-GTELLVFGKE--VHGNAIYRYNLLTNTWS---TGM 213 (437)
Q Consensus 140 ~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~lyv~GG~--~~~~~v~~yd~~t~~W~---~~~ 213 (437)
..||+......+..+|+..++...+.......+. ..+.. ++.||+.... .....++.++.. +.|. .++
T Consensus 150 g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~-----ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~ 223 (430)
T 3tc9_A 150 NHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRT-----ICWTHEADSMIITNDQNNNDRPNNYILTRE-SGFKVITELT 223 (430)
T ss_dssp EEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEE-----EEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEEE
T ss_pred CeEEEEeCCCcEEEEECCCCEEEEEecCCCCcce-----EEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cceeeeeeec
Confidence 3455544336788899998877665431111111 01122 3458887532 223346667653 3343 222
Q ss_pred CCCCCccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE-CCE-EEEEecccCCC
Q 043540 214 TMNTPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM-DGK-FYVIGGIGEGS 289 (437)
Q Consensus 214 ~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~g~-lyv~GG~~~~~ 289 (437)
.+.. -+++++. ++.||+.--. ...+++||+.+..-..+...+........++. +|+ ||+.-...
T Consensus 224 ~~~~---p~giavdp~~g~lyv~d~~------~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~--- 291 (430)
T 3tc9_A 224 KGQN---CNGAETHPINGELYFNSWN------AGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQ--- 291 (430)
T ss_dssp ECSS---CCCEEECTTTCCEEEEETT------TTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTT---
T ss_pred cCCC---ceEEEEeCCCCEEEEEECC------CCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCC---
Confidence 2222 2344443 5789987431 26799999987765333222221111223332 555 99984332
Q ss_pred CccCCeEEEEECC--CCceE---ecCCCC--CcccCCCCcccccccCCCCC-EEEEE---------CCEEEEEeCCCCeE
Q 043540 290 SAMLTDVEMYDLE--TGKWT---QITDMF--PARIGSDGVSVISAAGEAPP-LLAVV---------NNELYAADHEKEEV 352 (437)
Q Consensus 290 ~~~~~~v~~yd~~--~~~W~---~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~---------~~~ly~~gg~~~~v 352 (437)
+.+.+||.. +++.. .+...+ ..... + .........|. .+++. ++.||+.+.....|
T Consensus 292 ----~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~d--g-~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I 364 (430)
T 3tc9_A 292 ----HYILRSDYDWKTKRLTTPYIVCGQQGAKDWVD--G-VGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCI 364 (430)
T ss_dssp ----TEEEEEEEETTTTEECCCEEEEECTTCBCCBC--E-EGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEE
T ss_pred ----CEEEEEeCCcccccccceEEEeccCCCCCCCC--C-CCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEE
Confidence 457775544 33321 111110 00000 0 00000001112 34443 36899998778899
Q ss_pred EEEeCCCCcEEEcc
Q 043540 353 RKFDKGRKLWRTLG 366 (437)
Q Consensus 353 ~~yd~~~~~W~~v~ 366 (437)
.++|+. .....+.
T Consensus 365 ~~i~~~-G~v~~~~ 377 (430)
T 3tc9_A 365 RILTPQ-GRVTTFA 377 (430)
T ss_dssp EEECTT-SEEEEEE
T ss_pred EEECCC-CcEEEEE
Confidence 999964 4565554
No 171
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.84 E-value=0.34 Score=50.88 Aligned_cols=187 Identities=7% Similarity=0.049 Sum_probs=91.6
Q ss_pred cEEEEEecCceEEEeccCCCCeee-CCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCC-ceecCCCCCC
Q 043540 140 HWVYFSCKLKEWEAFDPIHHRWMH-LPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTN-TWSTGMTMNT 217 (437)
Q Consensus 140 ~~l~~~~~~~~~~~yDp~~~~W~~-l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~-~W~~~~~~~~ 217 (437)
.++.+......+..||..+++... +......... ....-++..++.|+. ...+.+||..++ ..... +..
T Consensus 68 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~-----~~~s~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~--~~~ 138 (814)
T 3mkq_A 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRS-----IAVHPTKPYVLSGSD--DLTVKLWNWENNWALEQT--FEG 138 (814)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE-----EEECSSSSEEEEEET--TSEEEEEEGGGTSEEEEE--EEC
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEE-----EEEeCCCCEEEEEcC--CCEEEEEECCCCceEEEE--EcC
Confidence 345555555678888988776543 2111111000 011224444445532 346888888765 22211 111
Q ss_pred Cccce-eeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE---CCEEEEEecccCCCCc
Q 043540 218 PRCLF-GSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM---DGKFYVIGGIGEGSSA 291 (437)
Q Consensus 218 ~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~---~g~lyv~GG~~~~~~~ 291 (437)
..... +++.. ++..++.|+.+ ..+.+||..+..-.................. ++.++++|+.+
T Consensus 139 ~~~~v~~~~~~p~~~~~l~~~~~d------g~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----- 207 (814)
T 3mkq_A 139 HEHFVMCVAFNPKDPSTFASGCLD------RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD----- 207 (814)
T ss_dssp CSSCEEEEEEETTEEEEEEEEETT------SEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTT-----
T ss_pred CCCcEEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCC-----
Confidence 11112 22222 45677777654 5688899866542111111111112222222 67777777764
Q ss_pred cCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEE-ECCEEEEEeCCCCeEEEEeCCCCcEE
Q 043540 292 MLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV-VNNELYAADHEKEEVRKFDKGRKLWR 363 (437)
Q Consensus 292 ~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~~~v~~yd~~~~~W~ 363 (437)
..+..||+.+++-... +...... + ..++. -++.+++.|+..+.|.+||..+.+-.
T Consensus 208 --g~i~~~d~~~~~~~~~--~~~~~~~----v---------~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~ 263 (814)
T 3mkq_A 208 --LTIKIWDYQTKSCVAT--LEGHMSN----V---------SFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE 263 (814)
T ss_dssp --SEEEEEETTTTEEEEE--EECCSSC----E---------EEEEECSSSSEEEEEETTSCEEEEETTTCSEE
T ss_pred --CEEEEEECCCCcEEEE--EcCCCCC----E---------EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 3588899887653221 1100000 0 11222 25667777777778999998876543
No 172
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=94.82 E-value=0.26 Score=45.54 Aligned_cols=169 Identities=10% Similarity=0.102 Sum_probs=81.0
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEE----CCEEEEEeccCCCCCCCceEEEEECCCCcEEe
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL----GEIAILAGGCDPRGKLLKSAELYNSITGTWMP 259 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 259 (437)
++..++.|+. ...+.+||..++....+..+..-......+.+ ++.+++.|+.+ ..+.++|..++.|..
T Consensus 24 ~g~~lasgs~--D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D------~~v~iWd~~~~~~~~ 95 (316)
T 3bg1_A 24 YGTRLATCSS--DRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYD------RKVIIWREENGTWEK 95 (316)
T ss_dssp GGCEEEEEET--TTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETT------SCEEEECCSSSCCCE
T ss_pred CCCEEEEEeC--CCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECC------CEEEEEECCCCcceE
Confidence 3444555542 34577788776643322222111111222222 25667777754 557889998887755
Q ss_pred cCCCCcCCcCeeEEEE--C--CEEEEEecccCCCCccCCeEEEEECCCC-ceEecCCCCCcccCCCCcccccccCCCCCE
Q 043540 260 ISSMHKARKMCSGVFM--D--GKFYVIGGIGEGSSAMLTDVEMYDLETG-KWTQITDMFPARIGSDGVSVISAAGEAPPL 334 (437)
Q Consensus 260 ~~~~~~~r~~~~~~~~--~--g~lyv~GG~~~~~~~~~~~v~~yd~~~~-~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (437)
+..+.........+.+ + +.+++.|+.+ ..+..||..+. .|.....+........ .+...+.. ....
T Consensus 96 ~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D-------~~i~lwd~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~-~~~~ 166 (316)
T 3bg1_A 96 SHEHAGHDSSVNSVCWAPHDYGLILACGSSD-------GAISLLTYTGEGQWEVKKINNAHTIGCN-AVSWAPAV-VPGS 166 (316)
T ss_dssp EEEECCCSSCCCEEEECCTTTCSCEEEECSS-------SCEEEEEECSSSCEEECCBTTSSSSCBC-CCEECCCC-CC--
T ss_pred EEEccCCCCceEEEEECCCCCCcEEEEEcCC-------CCEEEEecCCCCCcceeeeeccccCCcc-eEEEcccc-CCcc
Confidence 4333222222223332 3 5677777765 24777888765 5654332211110000 00000000 0000
Q ss_pred EEE-------ECCEEEEEeCCCCeEEEEeCCC-CcEEEccCCC
Q 043540 335 LAV-------VNNELYAADHEKEEVRKFDKGR-KLWRTLGRLP 369 (437)
Q Consensus 335 ~~~-------~~~~ly~~gg~~~~v~~yd~~~-~~W~~v~~lp 369 (437)
... .++++++.|+..+.|.+||..+ +.|..+..+.
T Consensus 167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~ 209 (316)
T 3bg1_A 167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE 209 (316)
T ss_dssp ----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB
T ss_pred ccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc
Confidence 000 0135667777777888998864 4687765553
No 173
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=94.81 E-value=0.3 Score=51.02 Aligned_cols=200 Identities=13% Similarity=0.083 Sum_probs=103.4
Q ss_pred ceEEEeccCCCCeeeCCCCCCccccccCCceeEE--eCCEEEEEcCccCCceEEEEECCCC----ceecC-C-CCCCCcc
Q 043540 149 KEWEAFDPIHHRWMHLPPMNASDCFMCADKESLA--VGTELLVFGKEVHGNAIYRYNLLTN----TWSTG-M-TMNTPRC 220 (437)
Q Consensus 149 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~lyv~GG~~~~~~v~~yd~~t~----~W~~~-~-~~~~~r~ 220 (437)
..+..+|+.+.....+...... .. .++. .++.||+.- .....|+++++.+. .-..+ . .+..|
T Consensus 386 ~~I~~id~~~~~~~~~~~~~~~--p~----gla~d~~~~~Ly~sD--~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P-- 455 (699)
T 1n7d_A 386 HEVRKMTLDRSEYTSLIPNLRN--VV----ALDTEVASNRIYWSD--LSQRMICSTQLDRAHGVSSYDTVISRDIQAP-- 455 (699)
T ss_dssp TC-CEECTTSCCEECCSCCCTT--CC----CCEEETTTTEEEECC--TTTTSBEEEESCCCCC-CCCCCBCCSCC--C--
T ss_pred cceEEEeCCCCcceeeeccCcc--eE----EEccccccCeEEEEe--cCCCeEEEEecCCCCCCcceEEEEeCCCCCc--
Confidence 5667778777766544322111 11 1122 267888864 22357888988751 11111 1 11112
Q ss_pred ceeeEE--ECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCC--CCcCCcCeeEEE--ECCEEEEEecccCCCCccCC
Q 043540 221 LFGSAS--LGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISS--MHKARKMCSGVF--MDGKFYVIGGIGEGSSAMLT 294 (437)
Q Consensus 221 ~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~--~~~~r~~~~~~~--~~g~lyv~GG~~~~~~~~~~ 294 (437)
.++++ .++.||+.-. ....++++|+....-+.+.. +..++ .+++ .++.||+..-. ...
T Consensus 456 -~glavD~~~g~LY~tD~------~~~~I~v~d~dg~~~~~l~~~~~~~P~---giavDp~~g~ly~td~~------~~~ 519 (699)
T 1n7d_A 456 -DGLAVDWIHSNIYWTDS------VLGTVSVADTKGVKRKTLFREQGSKPR---AIVVDPVHGFMYWTDWG------TPA 519 (699)
T ss_dssp -CCEECCCSSSBCEECCT------TTSCEEEEBSSSCCEEEECCCSSCCCC---CEECCSSSSCCEECCCS------SSC
T ss_pred -ceEEEEeeCCcEEEEec------cCCeEEEEecCCCceEEEEeCCCCCcc---eEEEccCCCcEEEcccC------CCC
Confidence 23333 4678998732 13568999988765544432 22222 2232 25788876311 123
Q ss_pred eEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE--CCEEEEEeCCCCeEEEEeCCCCcEEEccCCCCcc
Q 043540 295 DVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV--NNELYAADHEKEEVRKFDKGRKLWRTLGRLPEQA 372 (437)
Q Consensus 295 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~~~ 372 (437)
.|+++++....-+.+.... . .++.++++- +++||+.......|+++|+....-+.+.......
T Consensus 520 ~I~~~~~dG~~~~~l~~~~--l-------------~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~ 584 (699)
T 1n7d_A 520 KIKKGGLNGVDIYSLVTEN--I-------------QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRL 584 (699)
T ss_dssp CEEBCCSSSCCCCEESCSS--C-------------SSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSC
T ss_pred eEEEEeCCCCCeeEEEeCC--C-------------CCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcC
Confidence 5777776543322221110 0 111335553 6899999988889999999765444443322111
Q ss_pred cCCCcccEEEEEeCCEEEEEc
Q 043540 373 SSMNGWGLAFRACGDQLIVIG 393 (437)
Q Consensus 373 ~~~~~~~~a~~~~~~~l~v~G 393 (437)
. +.++++ +.++.||+.-
T Consensus 585 ~--~P~gla--vd~~~lywtd 601 (699)
T 1n7d_A 585 A--HPFSLA--VFEDKVFWTD 601 (699)
T ss_dssp S--SCCCCE--EETTEEEEEC
T ss_pred C--CceEeE--EECCEEEEEe
Confidence 1 113443 4678999885
No 174
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=94.81 E-value=1 Score=42.93 Aligned_cols=105 Identities=17% Similarity=0.201 Sum_probs=61.4
Q ss_pred CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCCc
Q 043540 228 GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGK 305 (437)
Q Consensus 228 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~ 305 (437)
+++.++.|+.+ ..+.+||..+++-... +.........+.+ +++..+.|+.+ ..+..||+.+++
T Consensus 134 dg~~l~s~~~d------~~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~p~~~~l~s~s~d-------~~v~iwd~~~~~ 198 (393)
T 1erj_A 134 DGKFLATGAED------RLIRIWDIENRKIVMI--LQGHEQDIYSLDYFPSGDKLVSGSGD-------RTVRIWDLRTGQ 198 (393)
T ss_dssp TSSEEEEEETT------SCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETT-------SEEEEEETTTTE
T ss_pred CCCEEEEEcCC------CeEEEEECCCCcEEEE--EccCCCCEEEEEEcCCCCEEEEecCC-------CcEEEEECCCCe
Confidence 56777777754 5688899988754322 1111112222222 56666666654 358889998876
Q ss_pred eEecCCCCCcccCCCCcccccccCCCCCEEEEE--CCEEEEEeCCCCeEEEEeCCCCcEE
Q 043540 306 WTQITDMFPARIGSDGVSVISAAGEAPPLLAVV--NNELYAADHEKEEVRKFDKGRKLWR 363 (437)
Q Consensus 306 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ly~~gg~~~~v~~yd~~~~~W~ 363 (437)
-...-...... ..++.. ++++++.|+..+.|.+||..+..-.
T Consensus 199 ~~~~~~~~~~v----------------~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~ 242 (393)
T 1erj_A 199 CSLTLSIEDGV----------------TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 242 (393)
T ss_dssp EEEEEECSSCE----------------EEEEECSTTCCEEEEEETTSCEEEEETTTCCEE
T ss_pred eEEEEEcCCCc----------------EEEEEECCCCCEEEEEcCCCcEEEEECCCCcEE
Confidence 53322111110 122222 6788888888888999999887643
No 175
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=94.69 E-value=1.2 Score=45.51 Aligned_cols=186 Identities=13% Similarity=0.061 Sum_probs=100.8
Q ss_pred ceEEEeccCC------CCeeeCC-CCCCccccccCCceeEEeCCEEEEEcC-cc-----CCceEEEEECC-CC---ceec
Q 043540 149 KEWEAFDPIH------HRWMHLP-PMNASDCFMCADKESLAVGTELLVFGK-EV-----HGNAIYRYNLL-TN---TWST 211 (437)
Q Consensus 149 ~~~~~yDp~~------~~W~~l~-~~p~~~~~~~~~~~~~~~~~~lyv~GG-~~-----~~~~v~~yd~~-t~---~W~~ 211 (437)
..++.+|..+ ++...+. .-+. .. .....+-+|+.+++.. .. ....++++|.. ++ ..+.
T Consensus 161 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~---~~--~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~ 235 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAVRELSDDAHR---FV--TGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRT 235 (662)
T ss_dssp EEEEEEETTSTTTTCGGGSEESSCSCSS---EE--CCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEE
T ss_pred eEEEEEECCCCccccCCceeEEEecCCC---cc--cCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEE
Confidence 4677888887 5655554 2111 10 0111333554444332 21 23579999998 56 3443
Q ss_pred CCCCCCCccceeeE-EECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCc-------CeeEEEE-CCEEEEE
Q 043540 212 GMTMNTPRCLFGSA-SLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARK-------MCSGVFM-DGKFYVI 282 (437)
Q Consensus 212 ~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~-------~~~~~~~-~g~lyv~ 282 (437)
+..-. .......+ .-++++|+.+..++ ...++++|..+++++.+........ ....++. ++++++.
T Consensus 236 l~~~~-~~~~~~~~~spdg~l~~~~~~~~----~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~ 310 (662)
T 3azo_A 236 LLGGP-EEAIAQAEWAPDGSLIVATDRTG----WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVV 310 (662)
T ss_dssp EEEET-TBCEEEEEECTTSCEEEEECTTS----SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEE
T ss_pred eCCCC-CceEcceEECCCCeEEEEECCCC----CeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEE
Confidence 32211 11111222 22667777765442 2478999998999988765432110 1223343 6777776
Q ss_pred ecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEE-EEECCEEEEEeCC---CCeEEEEeCC
Q 043540 283 GGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLL-AVVNNELYAADHE---KEEVRKFDKG 358 (437)
Q Consensus 283 GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ly~~gg~---~~~v~~yd~~ 358 (437)
+.. ....++.+|+.++..+.+..-... . ..+ ..-++.+++.... ...++.+|..
T Consensus 311 ~~~------~~~~l~~~d~~~~~~~~l~~~~~~-~---------------~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~ 368 (662)
T 3azo_A 311 HGK------GAAVLGILDPESGELVDAAGPWTE-W---------------AATLTVSGTRAVGVAASPRTAYEVVELDTV 368 (662)
T ss_dssp EBS------SSCEEEEEETTTTEEEECCSSCCE-E---------------EEEEEEETTEEEEEEEETTEEEEEEEEETT
T ss_pred EEc------CccEEEEEECCCCcEEEecCCCCe-E---------------EEEEecCCCEEEEEEcCCCCCCEEEEEECC
Confidence 542 234688889988887766422111 0 122 3345666666433 2378999998
Q ss_pred CCcEEEcc
Q 043540 359 RKLWRTLG 366 (437)
Q Consensus 359 ~~~W~~v~ 366 (437)
+++.+.+.
T Consensus 369 ~g~~~~l~ 376 (662)
T 3azo_A 369 TGRARTIG 376 (662)
T ss_dssp TCCEEEEE
T ss_pred CCceEEee
Confidence 88887774
No 176
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=94.66 E-value=2.6 Score=38.54 Aligned_cols=152 Identities=14% Similarity=0.048 Sum_probs=82.0
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEE-CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCC
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL-GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISS 262 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 262 (437)
++.||+... ....++++|+.++. ......+ ..-++++.. ++++||+..... ...+..||+.+++.+.+..
T Consensus 42 ~g~lyv~d~--~~~~I~~~d~~g~~-~~~~~~~--~~p~gia~~~dG~l~vad~~~~----~~~v~~~d~~~g~~~~~~~ 112 (306)
T 2p4o_A 42 DGTIFVTNH--EVGEIVSITPDGNQ-QIHATVE--GKVSGLAFTSNGDLVATGWNAD----SIPVVSLVKSDGTVETLLT 112 (306)
T ss_dssp TSCEEEEET--TTTEEEEECTTCCE-EEEEECS--SEEEEEEECTTSCEEEEEECTT----SCEEEEEECTTSCEEEEEE
T ss_pred CCCEEEEeC--CCCeEEEECCCCce-EEEEeCC--CCceeEEEcCCCcEEEEeccCC----cceEEEEcCCCCeEEEEEe
Confidence 567888742 34578999987642 2211111 122333333 567888753211 1357889998988877655
Q ss_pred CCcCCcCeeEEE-ECCEEEEEecccCCCCccCCeEEEEECCCCc---eEecCCCCCcccCCCCcccccccCCCCCEEEEE
Q 043540 263 MHKARKMCSGVF-MDGKFYVIGGIGEGSSAMLTDVEMYDLETGK---WTQITDMFPARIGSDGVSVISAAGEAPPLLAVV 338 (437)
Q Consensus 263 ~~~~r~~~~~~~-~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~---W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (437)
.+..+.....+. .++.+|+.... ...++++|+.+++ |..-+.+...... ..+ ..+..+..-
T Consensus 113 ~~~~~~~~g~~~~~~~~~~v~d~~-------~g~i~~~d~~~~~~~v~~~~~~~~~~~~~--~~~------~~pngis~d 177 (306)
T 2p4o_A 113 LPDAIFLNGITPLSDTQYLTADSY-------RGAIWLIDVVQPSGSIWLEHPMLARSNSE--SVF------PAANGLKRF 177 (306)
T ss_dssp CTTCSCEEEEEESSSSEEEEEETT-------TTEEEEEETTTTEEEEEEECGGGSCSSTT--CCS------CSEEEEEEE
T ss_pred CCCccccCcccccCCCcEEEEECC-------CCeEEEEeCCCCcEeEEEECCcccccccc--CCC------CcCCCcCcC
Confidence 544443333332 25667776421 2368999987642 2111111000000 000 011234334
Q ss_pred CCEEEEEeCCCCeEEEEeCCC
Q 043540 339 NNELYAADHEKEEVRKFDKGR 359 (437)
Q Consensus 339 ~~~ly~~gg~~~~v~~yd~~~ 359 (437)
++.||+.....+.|++||...
T Consensus 178 g~~lyv~d~~~~~I~~~~~~~ 198 (306)
T 2p4o_A 178 GNFLYVSNTEKMLLLRIPVDS 198 (306)
T ss_dssp TTEEEEEETTTTEEEEEEBCT
T ss_pred CCEEEEEeCCCCEEEEEEeCC
Confidence 568999988788999999875
No 177
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=94.62 E-value=1.9 Score=39.52 Aligned_cols=174 Identities=13% Similarity=0.113 Sum_probs=87.6
Q ss_pred CceEEEeccCCCCeeeCCCCCCccccccCCceeEEe--C---CEEEEEcCccCCceEEEEECCCCc--eecCCCCCCCcc
Q 043540 148 LKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAV--G---TELLVFGKEVHGNAIYRYNLLTNT--WSTGMTMNTPRC 220 (437)
Q Consensus 148 ~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~--~---~~lyv~GG~~~~~~v~~yd~~t~~--W~~~~~~~~~r~ 220 (437)
...+..||..+++...+.......... .+.. + +.+++.|+. ...+.+||..++. -..+.....+
T Consensus 43 d~~v~iw~~~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~-- 113 (357)
T 3i2n_A 43 TGVIQLYEIQHGDLKLLREIEKAKPIK-----CGTFGATSLQQRYLATGDF--GGNLHIWNLEAPEMPVYSVKGHKEI-- 113 (357)
T ss_dssp CEEEEEEEECSSSEEEEEEEEESSCEE-----EEECTTCCTTTCCEEEEET--TSCEEEECTTSCSSCSEEECCCSSC--
T ss_pred CcEEEEEeCCCCcccceeeecccCcEE-----EEEEcCCCCCCceEEEecC--CCeEEEEeCCCCCccEEEEEecccc--
Confidence 456788888877654332211111100 1222 2 355555543 3468888887765 1111111111
Q ss_pred ceeeE-------EECCEEEEEeccCCCCCCCceEEEEECCCCc--EEecCCCCcC-CcCeeEEE------ECCEEEEEec
Q 043540 221 LFGSA-------SLGEIAILAGGCDPRGKLLKSAELYNSITGT--WMPISSMHKA-RKMCSGVF------MDGKFYVIGG 284 (437)
Q Consensus 221 ~~~~~-------~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~-r~~~~~~~------~~g~lyv~GG 284 (437)
-.++. .-++..++.|+.+ ..+.+||..+.. ...+...... ......+. -++++++.|+
T Consensus 114 v~~~~~~~~~~~s~~~~~l~~~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 187 (357)
T 3i2n_A 114 INAIDGIGGLGIGEGAPEIVTGSRD------GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGY 187 (357)
T ss_dssp EEEEEEESGGGCC-CCCEEEEEETT------SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEE
T ss_pred eEEEeeccccccCCCccEEEEEeCC------CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEc
Confidence 11111 1245566676653 467889988764 3333222211 11222222 4677777776
Q ss_pred ccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE----CCEEEEEeCCCCeEEEEeCCC
Q 043540 285 IGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV----NNELYAADHEKEEVRKFDKGR 359 (437)
Q Consensus 285 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ly~~gg~~~~v~~yd~~~ 359 (437)
.+ ..+..||+.+.+-.......... ..++.. ++..++.|+..+.|.+||..+
T Consensus 188 ~d-------~~i~i~d~~~~~~~~~~~~~~~v----------------~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 243 (357)
T 3i2n_A 188 DN-------GDIKLFDLRNMALRWETNIKNGV----------------CSLEFDRKDISMNKLVATSLEGKFHVFDMRT 243 (357)
T ss_dssp TT-------SEEEEEETTTTEEEEEEECSSCE----------------EEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred cC-------CeEEEEECccCceeeecCCCCce----------------EEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence 54 35889999887643222111111 123333 567777777778899998865
No 178
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=94.62 E-value=3.2 Score=39.54 Aligned_cols=181 Identities=12% Similarity=0.005 Sum_probs=99.9
Q ss_pred EEEEEe-cCceEEEeccCCCCeeeCCC--CCCccccccCCceeEE-eCCEEEEEcCccCCceEEEEECCCCceecCC--C
Q 043540 141 WVYFSC-KLKEWEAFDPIHHRWMHLPP--MNASDCFMCADKESLA-VGTELLVFGKEVHGNAIYRYNLLTNTWSTGM--T 214 (437)
Q Consensus 141 ~l~~~~-~~~~~~~yDp~~~~W~~l~~--~p~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~--~ 214 (437)
.+|+.. ....++++|+.......+.. +..|.. .++. .++.||+.-. ..+.++++++....-+.+. .
T Consensus 129 ~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~g------lavd~~~g~lY~~d~--~~~~I~~~~~dg~~~~~l~~~~ 200 (386)
T 3v65_B 129 LVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGG------LAVDWVHDKLYWTDS--GTSRIEVANLDGAHRKVLLWQS 200 (386)
T ss_dssp EEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCC------EEEETTTTEEEEEET--TTTEEEECBTTSCSCEEEECSS
T ss_pred eEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccE------EEEEeCCCeEEEEcC--CCCeEEEEeCCCCceEEeecCC
Confidence 444432 34567788887765544321 222211 1122 3788998742 2357888887654333321 2
Q ss_pred CCCCccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCe-eEEEE--CCEEEEEecccCCC
Q 043540 215 MNTPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMC-SGVFM--DGKFYVIGGIGEGS 289 (437)
Q Consensus 215 ~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~-~~~~~--~g~lyv~GG~~~~~ 289 (437)
+..| .+.++- ++.||+.--. ....++++++....-+.+..- ..... +.++- +++||+.-..
T Consensus 201 l~~P---~giavdp~~g~ly~td~~-----~~~~I~r~~~dG~~~~~~~~~--~~~~PnGlavd~~~~~lY~aD~~---- 266 (386)
T 3v65_B 201 LEKP---RAIALHPMEGTIYWTDWG-----NTPRIEASSMDGSGRRIIADT--HLFWPNGLTIDYAGRRMYWVDAK---- 266 (386)
T ss_dssp CSCE---EEEEEETTTTEEEEEECS-----SSCEEEEEETTSCSCEEEECS--SCSCEEEEEEEGGGTEEEEEETT----
T ss_pred CCCC---cEEEEEcCCCeEEEeccC-----CCCEEEEEeCCCCCcEEEEEC--CCCCeeeEEEeCCCCEEEEEECC----
Confidence 2222 233443 6889988421 136799999876443333211 11122 33332 6899998433
Q ss_pred CccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCc
Q 043540 290 SAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKL 361 (437)
Q Consensus 290 ~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~ 361 (437)
...|+++|+....-..+.... . ..+.++++.++.||+.+.....|.++|+.+.+
T Consensus 267 ---~~~I~~~d~dG~~~~~~~~~~--~-------------~~P~giav~~~~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 267 ---HHVIERANLDGSHRKAVISQG--L-------------PHPFAITVFEDSLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp ---TTEEEEECTTSCSCEEEECSS--C-------------SSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred ---CCEEEEEeCCCCeeEEEEECC--C-------------CCceEEEEECCEEEEeeCCCCeEEEEECCCCc
Confidence 256999998753322221110 0 11245777899999999888899999965543
No 179
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=94.60 E-value=2 Score=40.14 Aligned_cols=134 Identities=14% Similarity=0.189 Sum_probs=73.2
Q ss_pred ceEEEEECCCCceecCCCCCCCccceeeEEE----CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeE
Q 043540 197 NAIYRYNLLTNTWSTGMTMNTPRCLFGSASL----GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSG 272 (437)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~ 272 (437)
..+.+||..+++-... +........+..+ ++..++.|+.+ ..+.+||..+++.... +.........
T Consensus 176 ~~v~lwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~g~~l~sgs~D------g~v~~wd~~~~~~~~~--~~~h~~~v~~ 245 (354)
T 2pbi_B 176 GTCALWDVESGQLLQS--FHGHGADVLCLDLAPSETGNTFVSGGCD------KKAMVWDMRSGQCVQA--FETHESDVNS 245 (354)
T ss_dssp SEEEEEETTTCCEEEE--EECCSSCEEEEEECCCSSCCEEEEEETT------SCEEEEETTTCCEEEE--ECCCSSCEEE
T ss_pred CcEEEEeCCCCeEEEE--EcCCCCCeEEEEEEeCCCCCEEEEEeCC------CeEEEEECCCCcEEEE--ecCCCCCeEE
Confidence 4688899887754321 1000011111222 34677777764 4578899988765332 1111122233
Q ss_pred EEE--CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEE--ECCEEEEEeCC
Q 043540 273 VFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV--VNNELYAADHE 348 (437)
Q Consensus 273 ~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ly~~gg~ 348 (437)
+.+ ++.+++.|+.+ ..+..||+.+..-..+-........ ...+. .++++++.|+.
T Consensus 246 v~~~p~~~~l~s~s~D-------~~v~lwd~~~~~~~~~~~~~~~~~~--------------~~~~~~s~~g~~l~~g~~ 304 (354)
T 2pbi_B 246 VRYYPSGDAFASGSDD-------ATCRLYDLRADREVAIYSKESIIFG--------------ASSVDFSLSGRLLFAGYN 304 (354)
T ss_dssp EEECTTSSEEEEEETT-------SCEEEEETTTTEEEEEECCTTCCSC--------------EEEEEECTTSSEEEEEET
T ss_pred EEEeCCCCEEEEEeCC-------CeEEEEECCCCcEEEEEcCCCcccc--------------eeEEEEeCCCCEEEEEEC
Confidence 333 67777887765 3488899887643222111111111 11222 36788888888
Q ss_pred CCeEEEEeCCCCc
Q 043540 349 KEEVRKFDKGRKL 361 (437)
Q Consensus 349 ~~~v~~yd~~~~~ 361 (437)
...|.+||..+.+
T Consensus 305 d~~i~vwd~~~~~ 317 (354)
T 2pbi_B 305 DYTINVWDVLKGS 317 (354)
T ss_dssp TSCEEEEETTTCS
T ss_pred CCcEEEEECCCCc
Confidence 8889999987654
No 180
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=94.58 E-value=1.3 Score=41.66 Aligned_cols=110 Identities=6% Similarity=-0.052 Sum_probs=63.6
Q ss_pred EEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCe-eEEEE--CCEEEEEecccCCCCccCCeEEEEECCCCce
Q 043540 230 IAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMC-SGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGKW 306 (437)
Q Consensus 230 ~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~-~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W 306 (437)
.+++.|+.+ ..+.+||..+.+....-......... ++.+. ++++++.|+.+ ..+..||+.+...
T Consensus 87 ~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-------~~i~iwd~~~~~~ 153 (383)
T 3ei3_B 87 TTVAVGSKG------GDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR-------GATTLRDFSGSVI 153 (383)
T ss_dssp TEEEEEEBT------SCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT-------TEEEEEETTSCEE
T ss_pred CEEEEEcCC------CeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC-------CEEEEEECCCCce
Confidence 456666643 45788999888766544332222222 33333 44677777654 3588899988766
Q ss_pred EecCCCCCcccCCCCcccccccCCCCCEEE-EECCEEEEEeCCCCeEEEEeCCCCcEEEc
Q 043540 307 TQITDMFPARIGSDGVSVISAAGEAPPLLA-VVNNELYAADHEKEEVRKFDKGRKLWRTL 365 (437)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~gg~~~~v~~yd~~~~~W~~v 365 (437)
..+......... ...++ .-++++++.|+....|.+||.....-..+
T Consensus 154 ~~~~~~~~~~~~-------------v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 200 (383)
T 3ei3_B 154 QVFAKTDSWDYW-------------YCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKE 200 (383)
T ss_dssp EEEECCCCSSCC-------------EEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEE
T ss_pred EEEeccCCCCCC-------------eEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEe
Confidence 655432211111 01122 23567777787788999999965544444
No 181
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=94.56 E-value=2.8 Score=38.61 Aligned_cols=147 Identities=10% Similarity=-0.010 Sum_probs=86.7
Q ss_pred eCCEEEEEcCccCCceEEEEECCCCceecCC--CCCCCccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEE
Q 043540 183 VGTELLVFGKEVHGNAIYRYNLLTNTWSTGM--TMNTPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWM 258 (437)
Q Consensus 183 ~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~--~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~ 258 (437)
.++.||+.-. ..+.+.++|+....-+.+. .+..| .+.++- ++.||+..-. ....++++++....-+
T Consensus 87 ~~~~ly~~d~--~~~~I~~~~~~g~~~~~~~~~~~~~P---~~iavdp~~g~ly~~d~~-----~~~~I~~~~~dG~~~~ 156 (316)
T 1ijq_A 87 IHSNIYWTDS--VLGTVSVADTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWG-----TPAKIKKGGLNGVDIY 156 (316)
T ss_dssp TTTEEEEEET--TTTEEEEEETTSSSEEEEEECTTCCE---EEEEEETTTTEEEEEECS-----SSCEEEEEETTSCCEE
T ss_pred cCCeEEEEEC--CCCEEEEEeCCCCceEEEEECCCCCc---ceEEeCCCCCEEEEEccC-----CCCeEEEEcCCCCCeE
Confidence 4789998742 3457889998754433332 22222 234443 6899998521 1257899998654433
Q ss_pred ecCCCCcCCcCe-eEEEE--CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEE
Q 043540 259 PISSMHKARKMC-SGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLL 335 (437)
Q Consensus 259 ~~~~~~~~r~~~-~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (437)
.+... ..... +.++- +++||+.-.. .+.++++|+....-+.+........ .+.++
T Consensus 157 ~~~~~--~~~~P~gla~d~~~~~lY~~D~~-------~~~I~~~d~dg~~~~~~~~~~~~~~-------------~P~gi 214 (316)
T 1ijq_A 157 SLVTE--NIQWPNGITLDLLSGRLYWVDSK-------LHSISSIDVNGGNRKTILEDEKRLA-------------HPFSL 214 (316)
T ss_dssp EEECS--SCSCEEEEEEETTTTEEEEEETT-------TTEEEEEETTSCSCEEEEECTTTTS-------------SEEEE
T ss_pred EEEEC--CCCCceEEEEeccCCEEEEEECC-------CCeEEEEecCCCceEEEeecCCccC-------------CcEEE
Confidence 33221 11223 33333 5899998533 3579999987543333321111111 12457
Q ss_pred EEECCEEEEEeCCCCeEEEEeCCCCc
Q 043540 336 AVVNNELYAADHEKEEVRKFDKGRKL 361 (437)
Q Consensus 336 ~~~~~~ly~~gg~~~~v~~yd~~~~~ 361 (437)
++.++.||+.....+.|.++|+.+.+
T Consensus 215 av~~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 215 AVFEDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp EEETTEEEEEETTTTEEEEEETTTCC
T ss_pred EEECCEEEEEECCCCeEEEEeCCCCc
Confidence 77899999999888999999987654
No 182
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=94.55 E-value=1.1 Score=40.44 Aligned_cols=174 Identities=13% Similarity=0.106 Sum_probs=89.2
Q ss_pred ceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEE----cCc-----------cCCceEEEEECCCCceecCC
Q 043540 149 KEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVF----GKE-----------VHGNAIYRYNLLTNTWSTGM 213 (437)
Q Consensus 149 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~----GG~-----------~~~~~v~~yd~~t~~W~~~~ 213 (437)
..+..||+.+++...+................+.-++.+|+. |.. .....++.+|+. ++.+.+.
T Consensus 90 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~ 168 (296)
T 3e5z_A 90 RRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPI 168 (296)
T ss_dssp TEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEE
T ss_pred CeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEee
Confidence 568899998888765532211111111111123346788885 320 113478999987 5554432
Q ss_pred -CCCCCccceeeEE-ECCEEEEEeccCCCCCCCceEEEEECC-CCcE-E--ecCCCCcCCcCeeEEE-ECCEEEEEeccc
Q 043540 214 -TMNTPRCLFGSAS-LGEIAILAGGCDPRGKLLKSAELYNSI-TGTW-M--PISSMHKARKMCSGVF-MDGKFYVIGGIG 286 (437)
Q Consensus 214 -~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~-t~~W-~--~~~~~~~~r~~~~~~~-~~g~lyv~GG~~ 286 (437)
.+..+ .+.+. -++++++.... ...+++||.. +++. . .+-....... .++++ -+|+||+..+
T Consensus 169 ~~~~~~---~gi~~s~dg~~lv~~~~------~~~i~~~~~~~~g~~~~~~~~~~~~~~~p-~~i~~d~~G~l~v~~~-- 236 (296)
T 3e5z_A 169 RDRVKP---NGLAFLPSGNLLVSDTG------DNATHRYCLNARGETEYQGVHFTVEPGKT-DGLRVDAGGLIWASAG-- 236 (296)
T ss_dssp CCCSSE---EEEEECTTSCEEEEETT------TTEEEEEEECSSSCEEEEEEEECCSSSCC-CSEEEBTTSCEEEEET--
T ss_pred cCCCCC---ccEEECCCCCEEEEeCC------CCeEEEEEECCCCcCcCCCeEeeCCCCCC-CeEEECCCCCEEEEcC--
Confidence 11111 22222 24555554332 2578889886 5555 1 1111111111 12222 3788998862
Q ss_pred CCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE--C-CEEEEEeCCCCeEEEEeCCCCc
Q 043540 287 EGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV--N-NELYAADHEKEEVRKFDKGRKL 361 (437)
Q Consensus 287 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~ly~~gg~~~~v~~yd~~~~~ 361 (437)
..+.+||+.......+. .+.. . ..++.- + +.||+.. ...+++|+++++.
T Consensus 237 -------~~v~~~~~~g~~~~~~~-~~~~-~---------------~~~~f~~~d~~~L~v~t--~~~l~~~~~~~~~ 288 (296)
T 3e5z_A 237 -------DGVHVLTPDGDELGRVL-TPQT-T---------------SNLCFGGPEGRTLYMTV--STEFWSIETNVRG 288 (296)
T ss_dssp -------TEEEEECTTSCEEEEEE-CSSC-C---------------CEEEEESTTSCEEEEEE--TTEEEEEECSCCB
T ss_pred -------CeEEEECCCCCEEEEEE-CCCC-c---------------eeEEEECCCCCEEEEEc--CCeEEEEEccccc
Confidence 24899999855444443 2222 1 223332 2 3677774 3589999998865
No 183
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=94.53 E-value=2.2 Score=42.60 Aligned_cols=142 Identities=11% Similarity=0.110 Sum_probs=78.9
Q ss_pred CEEEEEecc-CCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCCc
Q 043540 229 EIAILAGGC-DPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGK 305 (437)
Q Consensus 229 ~~iyv~GG~-~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~ 305 (437)
+..+++|+. + ..+.+||..++.... ..+.........+.+ ++++.+.|+.+ ..+..||+.+.+
T Consensus 456 ~~~l~~~~~~d------~~i~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~d-------g~i~iw~~~~~~ 521 (615)
T 1pgu_A 456 QNYVAVGLEEG------NTIQVFKLSDLEVSF-DLKTPLRAKPSYISISPSETYIAAGDVM-------GKILLYDLQSRE 521 (615)
T ss_dssp SSEEEEEETTT------SCEEEEETTEEEEEE-ECSSCCSSCEEEEEECTTSSEEEEEETT-------SCEEEEETTTTE
T ss_pred CCEEEEeecCC------CeEEEEECCCccccc-cccCCccCceEEEEECCCCCEEEEcCCC-------CeEEEeeCCCCc
Confidence 556666654 3 468899998876643 233323333334444 78888888765 348899998765
Q ss_pred eEecCCCCCcccCCCCcccccccCCCCCEEEEE------------CCEEEEEeCCCCeEEEEeCCCC--cEEEccCCCCc
Q 043540 306 WTQITDMFPARIGSDGVSVISAAGEAPPLLAVV------------NNELYAADHEKEEVRKFDKGRK--LWRTLGRLPEQ 371 (437)
Q Consensus 306 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~ly~~gg~~~~v~~yd~~~~--~W~~v~~lp~~ 371 (437)
-... +...... . -..+.+ ++++++.++..+.|.+||..+. ....+..-...
T Consensus 522 ~~~~--~~~~h~~---~----------v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~ 586 (615)
T 1pgu_A 522 VKTS--RWAFRTS---K----------INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDG 586 (615)
T ss_dssp EEEC--CSCCCSS---C----------EEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTC
T ss_pred ceeE--eecCCCC---c----------eeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccc
Confidence 4322 2210111 0 112222 6788888887889999999885 23332211111
Q ss_pred ccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCC
Q 043540 372 ASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDE 412 (437)
Q Consensus 372 ~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~ 412 (437)
. ...++ .-+++ ++.||.+ ..+.+|.++.
T Consensus 587 v-----~~l~~-s~~~~-l~s~~~d------~~v~iw~~~~ 614 (615)
T 1pgu_A 587 V-----NNLLW-ETPST-LVSSGAD------ACIKRWNVVL 614 (615)
T ss_dssp E-----EEEEE-EETTE-EEEEETT------SCEEEEEEC-
T ss_pred e-----EEEEE-cCCCC-eEEecCC------ceEEEEeeec
Confidence 1 12333 34667 6676654 2367777653
No 184
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=94.52 E-value=2.3 Score=40.47 Aligned_cols=214 Identities=14% Similarity=0.093 Sum_probs=105.0
Q ss_pred CEEEEEcCccCCceEEEEECCC--CceecCCCCCCCccceeeEEE---CCEEEEEeccCCCCCCCceEEEEECCCCcEEe
Q 043540 185 TELLVFGKEVHGNAIYRYNLLT--NTWSTGMTMNTPRCLFGSASL---GEIAILAGGCDPRGKLLKSAELYNSITGTWMP 259 (437)
Q Consensus 185 ~~lyv~GG~~~~~~v~~yd~~t--~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 259 (437)
+.||+-. ..-+++++... .+|+...+.......++++.- .+.||+.+..... -..+++.+-...+|+.
T Consensus 23 g~l~vgt----~~Gl~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~---g~gl~~s~D~G~tW~~ 95 (394)
T 3b7f_A 23 VMLLVAT----IKGAWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHL---GPTVFRSDDGGGNWTE 95 (394)
T ss_dssp CEEEEEE----TTEEEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--C---CEEEEEESSTTSCCEE
T ss_pred CEEEEEe----cCceEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCC---CccEEEeCCCCCCceE
Confidence 4566533 12477777655 789876321222222333333 4678876542111 1256666666788998
Q ss_pred cCCC---CcC--C----c--CeeEEEE-----CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCC---CCcccCCC
Q 043540 260 ISSM---HKA--R----K--MCSGVFM-----DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDM---FPARIGSD 320 (437)
Q Consensus 260 ~~~~---~~~--r----~--~~~~~~~-----~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~---~~~~~~~~ 320 (437)
+... +.. + . ....+.. .+.||+.+.. ..+++.+-...+|+.+... |.......
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~--------ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~ 167 (394)
T 3b7f_A 96 ATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSP--------QGLFRSTDHGASWEPVAGFNDHPMRRAWTG 167 (394)
T ss_dssp CSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEET--------TEEEEESSTTSBCEECHHHHTCTTHHHHHC
T ss_pred CCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecC--------CcEEEEcCCCCCeEECcCccCCcccccccc
Confidence 8632 211 1 0 1112233 4778876432 2377888788899988532 21100000
Q ss_pred Ccc-cccccCCCCCEEEEE---CCEEEEEeCCCCeEEEEeCCCCcEEEccC-C-----CCcccCCCcccEEEEEe---CC
Q 043540 321 GVS-VISAAGEAPPLLAVV---NNELYAADHEKEEVRKFDKGRKLWRTLGR-L-----PEQASSMNGWGLAFRAC---GD 387 (437)
Q Consensus 321 ~~~-~~~~~~~~~~~~~~~---~~~ly~~gg~~~~v~~yd~~~~~W~~v~~-l-----p~~~~~~~~~~~a~~~~---~~ 387 (437)
... ..+ .....+.+++. .+.||+... ...+++.+-..++|+.+.. + |...........+++.. .+
T Consensus 168 ~~~~g~~-~~~~i~~i~~d~~~~~~l~vg~~-~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~ 245 (394)
T 3b7f_A 168 GEQDGTP-DGPKMHSILVDPRDPKHLYIGMS-SGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPD 245 (394)
T ss_dssp CC----C-CCCEEEEEEECTTCTTCEEEEEE-TBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTT
T ss_pred ccccCCC-CCCceeEEEECCCCCCEEEEEEC-CCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCC
Confidence 000 000 00000123332 357887643 3458888888899998853 1 11110000001223222 16
Q ss_pred EEEEEcCCCCCCCCeeEEEeeecCCCCCCceecCc-cCC
Q 043540 388 QLIVIGGPRDSGGGIVELNGWVPDEGPPHWKLLAR-QPM 425 (437)
Q Consensus 388 ~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~~-~p~ 425 (437)
.||+... + .+++.+....+|+.+.. +|.
T Consensus 246 ~l~vg~~-----~-----gl~~s~D~G~tW~~~~~~l~~ 274 (394)
T 3b7f_A 246 ILYQQNH-----C-----GIYRMDRREGVWKRIGDAMPR 274 (394)
T ss_dssp EEEEEET-----T-----EEEEEETTTTEEECGGGGSCT
T ss_pred EEEEEcC-----C-----eEEEeCCCCCcceECCCCCCC
Confidence 6777432 1 26777777889998854 554
No 185
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=94.40 E-value=2.4 Score=43.88 Aligned_cols=203 Identities=9% Similarity=0.016 Sum_probs=97.4
Q ss_pred cEEEEEecCceEEEeccCCC---CeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCceecCCCCC
Q 043540 140 HWVYFSCKLKEWEAFDPIHH---RWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMN 216 (437)
Q Consensus 140 ~~l~~~~~~~~~~~yDp~~~---~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~ 216 (437)
.++++... ..++.+|..++ .-..+....... .....+-+++.++++. ...++++|..+++...+....
T Consensus 121 ~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~-----~~~~~SPDG~~la~~~---~~~i~~~d~~~g~~~~~~~~~ 191 (741)
T 2ecf_A 121 QRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFA-----TDAKLSPKGGFVSFIR---GRNLWVIDLASGRQMQLTADG 191 (741)
T ss_dssp SEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCE-----EEEEECTTSSEEEEEE---TTEEEEEETTTTEEEECCCCC
T ss_pred CEEEEEeC-CcEEEEECCCCCcceEEEcccCCccc-----ccccCCCCCCEEEEEe---CCcEEEEecCCCCEEEeccCC
Confidence 44444443 67888998877 544443321111 0111233555555542 247999999988777664322
Q ss_pred CCcc--------------ceeeEEE--CCEEEEEeccCCC---------------------------CCCCceEEEEECC
Q 043540 217 TPRC--------------LFGSASL--GEIAILAGGCDPR---------------------------GKLLKSAELYNSI 253 (437)
Q Consensus 217 ~~r~--------------~~~~~~~--~~~iyv~GG~~~~---------------------------~~~~~~~~~yd~~ 253 (437)
.... ......+ +++.++++..+.. ......++++|..
T Consensus 192 ~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 271 (741)
T 2ecf_A 192 STTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA 271 (741)
T ss_dssp CSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS
T ss_pred ccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC
Confidence 1100 0111222 4443333332211 0112378888988
Q ss_pred C-CcEEecCCCC-cCCc-CeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCc-ccCCCCcccccccC
Q 043540 254 T-GTWMPISSMH-KARK-MCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPA-RIGSDGVSVISAAG 329 (437)
Q Consensus 254 t-~~W~~~~~~~-~~r~-~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-~~~~~~~~~~~~~~ 329 (437)
+ ++-..+.... .... ..... -||+..++.... .......++.+|+.+++...+...... ....
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~--~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~---------- 338 (741)
T 2ecf_A 272 EQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQS--RDQKKLDLVEVTLASNQQRVLAHETSPTWVPL---------- 338 (741)
T ss_dssp TTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEE--TTSSEEEEEEEETTTCCEEEEEEEECSSCCCC----------
T ss_pred CCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEec--ccCCeEEEEEEECCCCceEEEEEcCCCCcCCc----------
Confidence 8 7654443221 1111 11223 555544444332 122345689999999887665321111 0000
Q ss_pred CCCCEEEEECCEEEEEeCCC--CeEEEEeCCCCcEEEcc
Q 043540 330 EAPPLLAVVNNELYAADHEK--EEVRKFDKGRKLWRTLG 366 (437)
Q Consensus 330 ~~~~~~~~~~~~ly~~gg~~--~~v~~yd~~~~~W~~v~ 366 (437)
.......-+|++++.+... ..|+.+|...+ ...+.
T Consensus 339 -~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~ 375 (741)
T 2ecf_A 339 -HNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALT 375 (741)
T ss_dssp -CSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESC
T ss_pred -CCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeee
Confidence 0011223367766665432 46888887666 55554
No 186
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=94.38 E-value=3.7 Score=39.50 Aligned_cols=149 Identities=13% Similarity=0.125 Sum_probs=85.0
Q ss_pred eCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCc-EEe
Q 043540 183 VGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGT-WMP 259 (437)
Q Consensus 183 ~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~ 259 (437)
-++.||+... ..+.+.++|+.++.-+.+..... ..+ .+.. ++.+|+..... ...++++|+.++. ...
T Consensus 140 ~~g~lyv~d~--~~~~I~~id~~~g~~~~~~~~~~--~~~-ia~~~~g~~l~~~d~~~-----~~~I~~~d~~~~~~~~~ 209 (409)
T 3hrp_A 140 GNNTVLAYQR--DDPRVRLISVDDNKVTTVHPGFK--GGK-PAVTKDKQRVYSIGWEG-----THTVYVYMKASGWAPTR 209 (409)
T ss_dssp STTEEEEEET--TTTEEEEEETTTTEEEEEEETCC--BCB-CEECTTSSEEEEEBSST-----TCEEEEEEGGGTTCEEE
T ss_pred CCCCEEEEec--CCCcEEEEECCCCEEEEeeccCC--CCc-eeEecCCCcEEEEecCC-----CceEEEEEcCCCceeEE
Confidence 3678998863 34579999999877665532211 112 2222 45677764321 1278999987653 233
Q ss_pred cCCCC--cCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCC-cccCCCCcccccccCCCCC-
Q 043540 260 ISSMH--KARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFP-ARIGSDGVSVISAAGEAPP- 333 (437)
Q Consensus 260 ~~~~~--~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~- 333 (437)
+.... .....+.+++. ++.||+... ...+.+||+.+.....+..... .... ..|.
T Consensus 210 ~g~~~~~~~~~p~~iav~p~~g~lyv~d~--------~~~I~~~d~~~~~~~~~~~~~~~g~~~-----------~~P~~ 270 (409)
T 3hrp_A 210 IGQLGSTFSGKIGAVALDETEEWLYFVDS--------NKNFGRFNVKTQEVTLIKQLELSGSLG-----------TNPGP 270 (409)
T ss_dssp EEECCTTSCSCCCBCEECTTSSEEEEECT--------TCEEEEEETTTCCEEEEEECCCCSCCC-----------CSSCC
T ss_pred eeeccchhcCCcEEEEEeCCCCeEEEEEC--------CCcEEEEECCCCCEEEEecccccCCCC-----------CCccc
Confidence 31111 11122233333 689999432 1369999999887655522111 0111 0111
Q ss_pred EEEEE--CCEEEEEeCCCCeEEEEeCCCC
Q 043540 334 LLAVV--NNELYAADHEKEEVRKFDKGRK 360 (437)
Q Consensus 334 ~~~~~--~~~ly~~gg~~~~v~~yd~~~~ 360 (437)
.+++. ++.||+.+.....|++||+...
T Consensus 271 ~ia~~p~~g~lyv~d~~~~~I~~~~~~g~ 299 (409)
T 3hrp_A 271 YLIYYFVDSNFYMSDQNLSSVYKITPDGE 299 (409)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTCC
T ss_pred cEEEeCCCCEEEEEeCCCCEEEEEecCCC
Confidence 45555 5899999988889999998765
No 187
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=94.34 E-value=1.1 Score=41.03 Aligned_cols=179 Identities=14% Similarity=0.080 Sum_probs=90.0
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCCCC-Ccc--ceeeEE-ECCEEEEE----eccCC-------CCCCCceEE
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNT-PRC--LFGSAS-LGEIAILA----GGCDP-------RGKLLKSAE 248 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~-~r~--~~~~~~-~~~~iyv~----GG~~~-------~~~~~~~~~ 248 (437)
++.||+... ....+.+||+. ++.+.+..... .+. -...++ -++.+|+. |-... .......++
T Consensus 96 dG~l~v~~~--~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~ 172 (305)
T 3dr2_A 96 QQRLVHCEH--GRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVY 172 (305)
T ss_dssp TSCEEEEET--TTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEE
T ss_pred CCCEEEEEC--CCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEE
Confidence 567777631 22468889885 66655432111 110 112222 26788886 32110 011136789
Q ss_pred EEECCCCcEEecCCCCcCCcCeeEEEE-CC-EEEEEecccCCCCccCCeEEEEECCCCceEec---CCCCCcccCCCCcc
Q 043540 249 LYNSITGTWMPISSMHKARKMCSGVFM-DG-KFYVIGGIGEGSSAMLTDVEMYDLETGKWTQI---TDMFPARIGSDGVS 323 (437)
Q Consensus 249 ~yd~~t~~W~~~~~~~~~r~~~~~~~~-~g-~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~---~~~~~~~~~~~~~~ 323 (437)
+||+.+++.+.+. ... ...+.++. ++ .||+..... .......+++||+..+..... .......
T Consensus 173 ~~d~~~g~~~~~~--~~~-~p~gl~~spdg~~lyv~~~~~--~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~------- 240 (305)
T 3dr2_A 173 RLPPDGSPLQRMA--DLD-HPNGLAFSPDEQTLYVSQTPE--QGHGSVEITAFAWRDGALHDRRHFASVPDGL------- 240 (305)
T ss_dssp EECSSSCCCEEEE--EES-SEEEEEECTTSSEEEEEECCC-----CCCEEEEEEEETTEEEEEEEEECCSSSC-------
T ss_pred EEcCCCCcEEEEe--cCC-CCcceEEcCCCCEEEEEecCC--cCCCCCEEEEEEecCCCccCCeEEEECCCCC-------
Confidence 9999988887664 211 11222332 55 488874321 011124688998876542211 1111111
Q ss_pred cccccCCCCCEEEE-ECCEEEEEeCCCCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEc
Q 043540 324 VISAAGEAPPLLAV-VNNELYAADHEKEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIG 393 (437)
Q Consensus 324 ~~~~~~~~~~~~~~-~~~~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~G 393 (437)
+..+++ -+|.||+.. .+.|.+||+..+.-..+. +|... .+.++..-++.|||..
T Consensus 241 --------pdgi~~d~~G~lwv~~--~~gv~~~~~~g~~~~~~~-~~~~~-----~~~~f~~d~~~L~it~ 295 (305)
T 3dr2_A 241 --------PDGFCVDRGGWLWSSS--GTGVCVFDSDGQLLGHIP-TPGTA-----SNCTFDQAQQRLFITG 295 (305)
T ss_dssp --------CCSEEECTTSCEEECC--SSEEEEECTTSCEEEEEE-CSSCC-----CEEEECTTSCEEEEEE
T ss_pred --------CCeEEECCCCCEEEec--CCcEEEECCCCCEEEEEE-CCCce-----eEEEEeCCCCEEEEEc
Confidence 112333 468888875 456999999776655553 34321 1333332235677765
No 188
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=94.31 E-value=2 Score=39.31 Aligned_cols=216 Identities=8% Similarity=0.017 Sum_probs=101.4
Q ss_pred EEEEEecCceEEEecc-CCCCeeeCCC--CCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCc-------ee
Q 043540 141 WVYFSCKLKEWEAFDP-IHHRWMHLPP--MNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNT-------WS 210 (437)
Q Consensus 141 ~l~~~~~~~~~~~yDp-~~~~W~~l~~--~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~-------W~ 210 (437)
.++.......+..||. .+.+...+.. ...+.. .+....+.+++.|+. ...+.+||..+.. .+
T Consensus 71 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~------~l~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~ 142 (342)
T 1yfq_A 71 QIYVGTVQGEILKVDLIGSPSFQALTNNEANLGIC------RICKYGDDKLIAASW--DGLIEVIDPRNYGDGVIAVKNL 142 (342)
T ss_dssp EEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEE------EEEEETTTEEEEEET--TSEEEEECHHHHTTBCEEEEES
T ss_pred EEEEEcCCCeEEEEEeccCCceEeccccCCCCceE------EEEeCCCCEEEEEcC--CCeEEEEcccccccccccccCC
Confidence 4555555567888998 7776655543 111111 111121444444432 3467888876400 22
Q ss_pred cCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCC-Cc--EEecCCCCcCCcCeeEEEE--CCEEEEEecc
Q 043540 211 TGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSIT-GT--WMPISSMHKARKMCSGVFM--DGKFYVIGGI 285 (437)
Q Consensus 211 ~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t-~~--W~~~~~~~~~r~~~~~~~~--~g~lyv~GG~ 285 (437)
.+..+.....-.+++...+. +++|+.+ ..+.+||..+ .. ...... +......+..+. ++++++.|+.
T Consensus 143 ~~~~~~~~~~v~~~~~~~~~-l~~~~~d------~~i~i~d~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~l~~~~~ 214 (342)
T 1yfq_A 143 NSNNTKVKNKIFTMDTNSSR-LIVGMNN------SQVQWFRLPLCEDDNGTIEES-GLKYQIRDVALLPKEQEGYACSSI 214 (342)
T ss_dssp CSSSSSSCCCEEEEEECSSE-EEEEEST------TEEEEEESSCCTTCCCEEEEC-SCSSCEEEEEECSGGGCEEEEEET
T ss_pred eeeEEeeCCceEEEEecCCc-EEEEeCC------CeEEEEECCccccccceeeec-CCCCceeEEEECCCCCCEEEEEec
Confidence 22223322222334444555 5555532 5788999887 33 221111 111111222333 5777777765
Q ss_pred cCCCCccCCeEEEEECCCC------c-eEecCCCCC--cccCCCCcccccccCCCCCEEEEE--CCEEEEEeCCCCeEEE
Q 043540 286 GEGSSAMLTDVEMYDLETG------K-WTQITDMFP--ARIGSDGVSVISAAGEAPPLLAVV--NNELYAADHEKEEVRK 354 (437)
Q Consensus 286 ~~~~~~~~~~v~~yd~~~~------~-W~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~ly~~gg~~~~v~~ 354 (437)
+ ..+..||.... + -..+..... ....+. ..-..+.+ ++++++.|+..+.|.+
T Consensus 215 d-------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~i~~~~~s~~~~~l~~~~~dg~i~v 277 (342)
T 1yfq_A 215 D-------GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLA----------YPVNSIEFSPRHKFLYTAGSDGIISC 277 (342)
T ss_dssp T-------SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSC----------CCEEEEEECTTTCCEEEEETTSCEEE
T ss_pred C-------CcEEEEEEcCCCcccccccceeeecccccccccccc----------eeEEEEEEcCCCCEEEEecCCceEEE
Confidence 4 24666665543 1 111111000 000000 00112222 5777777777778999
Q ss_pred EeCCCCcEEEccCCCCc-ccCCCcccEEEEEeCCEEEEEcCCC
Q 043540 355 FDKGRKLWRTLGRLPEQ-ASSMNGWGLAFRACGDQLIVIGGPR 396 (437)
Q Consensus 355 yd~~~~~W~~v~~lp~~-~~~~~~~~~a~~~~~~~l~v~GG~~ 396 (437)
||..+.+-... +... .. .-.+++ .++++++.|+.+
T Consensus 278 wd~~~~~~~~~--~~~~h~~----~v~~~~-~~~~~l~s~s~D 313 (342)
T 1yfq_A 278 WNLQTRKKIKN--FAKFNED----SVVKIA-CSDNILCLATSD 313 (342)
T ss_dssp EETTTTEEEEE--CCCCSSS----EEEEEE-ECSSEEEEEEEC
T ss_pred EcCccHhHhhh--hhcccCC----CceEec-CCCCeEEEEecC
Confidence 99988764332 2221 11 112333 667777777654
No 189
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=94.21 E-value=2.9 Score=37.38 Aligned_cols=183 Identities=10% Similarity=0.063 Sum_probs=83.8
Q ss_pred EEEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCc-eecCCCCCCCc
Q 043540 141 WVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNT-WSTGMTMNTPR 219 (437)
Q Consensus 141 ~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~-W~~~~~~~~~r 219 (437)
.++.......+..||..+.+-...-...... .......-++.+++.|+.. ..+.+|+..... .+.+..+....
T Consensus 31 ~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~d--g~i~~~~~~~~~~~~~~~~~~~~~ 104 (313)
T 3odt_A 31 KVASVSRDGTVRLWSKDDQWLGTVVYTGQGF----LNSVCYDSEKELLLFGGKD--TMINGVPLFATSGEDPLYTLIGHQ 104 (313)
T ss_dssp EEEEEETTSEEEEEEESSSEEEEEEEECSSC----EEEEEEETTTTEEEEEETT--SCEEEEETTCCTTSCC-CEECCCS
T ss_pred EEEEEEcCCcEEEEECCCCEEEEEeecCCcc----EEEEEECCCCCEEEEecCC--CeEEEEEeeecCCCCcccchhhcc
Confidence 4444445566788887665432211111100 0001122245555555432 356777765432 12222222222
Q ss_pred cceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCe-eEE-EE-CCEEEEEecccCCCCccCCeE
Q 043540 220 CLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMC-SGV-FM-DGKFYVIGGIGEGSSAMLTDV 296 (437)
Q Consensus 220 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~-~~~-~~-~g~lyv~GG~~~~~~~~~~~v 296 (437)
........++..++.|+.+ ..+.+||........ ....... ... .- ++.+++.|+.+ ..+
T Consensus 105 ~~i~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~d-------~~i 167 (313)
T 3odt_A 105 GNVCSLSFQDGVVISGSWD------KTAKVWKEGSLVYNL----QAHNASVWDAKVVSFSENKFLTASAD-------KTI 167 (313)
T ss_dssp SCEEEEEEETTEEEEEETT------SEEEEEETTEEEEEE----ECCSSCEEEEEEEETTTTEEEEEETT-------SCE
T ss_pred cCEEEEEecCCEEEEEeCC------CCEEEEcCCcEEEec----ccCCCceeEEEEccCCCCEEEEEECC-------CCE
Confidence 2223334456666676643 567788832222221 1111111 222 22 66677776654 247
Q ss_pred EEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCcE
Q 043540 297 EMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKLW 362 (437)
Q Consensus 297 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~W 362 (437)
..||..... ..+......... .....-++. ++.++..+.|.+||..+.+-
T Consensus 168 ~i~d~~~~~-~~~~~~~~~~i~--------------~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~ 217 (313)
T 3odt_A 168 KLWQNDKVI-KTFSGIHNDVVR--------------HLAVVDDGH-FISCSNDGLIKLVDMHTGDV 217 (313)
T ss_dssp EEEETTEEE-EEECSSCSSCEE--------------EEEEEETTE-EEEEETTSEEEEEETTTCCE
T ss_pred EEEecCceE-EEEeccCcccEE--------------EEEEcCCCe-EEEccCCCeEEEEECCchhh
Confidence 788833221 111111111111 122234667 66777778899999987653
No 190
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=94.15 E-value=1.3 Score=40.95 Aligned_cols=102 Identities=17% Similarity=0.108 Sum_probs=52.1
Q ss_pred cEEEEEecCceEEEeccCCCCeee-CCCCCCccccccCCceeEEe---CCEEEEEcCccCCceEEEEECCCCceecC-CC
Q 043540 140 HWVYFSCKLKEWEAFDPIHHRWMH-LPPMNASDCFMCADKESLAV---GTELLVFGKEVHGNAIYRYNLLTNTWSTG-MT 214 (437)
Q Consensus 140 ~~l~~~~~~~~~~~yDp~~~~W~~-l~~~p~~~~~~~~~~~~~~~---~~~lyv~GG~~~~~~v~~yd~~t~~W~~~-~~ 214 (437)
.+++.......+..||..+.+-.. +.....+. ..+.. ++.+++.|+. ...+.+||..+++-... ..
T Consensus 86 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i-------~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~ 156 (366)
T 3k26_A 86 PLLAVAGSRGIIRIINPITMQCIKHYVGHGNAI-------NELKFHPRDPNLLLSVSK--DHALRLWNIQTDTLVAIFGG 156 (366)
T ss_dssp EEEEEEETTCEEEEECTTTCCEEEEEESCCSCE-------EEEEECSSCTTEEEEEET--TSCEEEEETTTTEEEEEECS
T ss_pred CEEEEecCCCEEEEEEchhceEeeeecCCCCcE-------EEEEECCCCCCEEEEEeC--CCeEEEEEeecCeEEEEecc
Confidence 345555555678888987665322 11111100 01222 4556666643 34688899987754332 11
Q ss_pred CCCCccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCc
Q 043540 215 MNTPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGT 256 (437)
Q Consensus 215 ~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 256 (437)
+.........+.+ ++..++.|+.+ ..+.+||..+.+
T Consensus 157 ~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~ 194 (366)
T 3k26_A 157 VEGHRDEVLSADYDLLGEKIMSCGMD------HSLKLWRINSKR 194 (366)
T ss_dssp TTSCSSCEEEEEECTTSSEEEEEETT------SCEEEEESCSHH
T ss_pred cccccCceeEEEECCCCCEEEEecCC------CCEEEEECCCCc
Confidence 1212222222222 45666676654 467888887654
No 191
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=94.12 E-value=0.64 Score=44.69 Aligned_cols=142 Identities=10% Similarity=0.106 Sum_probs=79.8
Q ss_pred EEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCC
Q 043540 186 ELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSM 263 (437)
Q Consensus 186 ~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 263 (437)
.++.+| ..+.|+++|..|++-..+-.+........++.+ ++..++.|+.+ ..+.++|.++++-.. .+
T Consensus 117 n~lAvg---ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~D------g~v~iWd~~~~~~~~--~~ 185 (420)
T 4gga_A 117 NVLAVA---LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS------AEVQLWDVQQQKRLR--NM 185 (420)
T ss_dssp SEEEEE---ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEE--EE
T ss_pred CEEEEE---eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECC------CeEEEEEcCCCcEEE--EE
Confidence 345555 245799999999877655443333222333333 56777777754 568899998875322 22
Q ss_pred CcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEec--CCCCCcccCCCCcccccccCCCCCEEEEECCE
Q 043540 264 HKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQI--TDMFPARIGSDGVSVISAAGEAPPLLAVVNNE 341 (437)
Q Consensus 264 ~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (437)
........++..++.+.+.|+.+ ..+..+|......... ........ .....-++.
T Consensus 186 ~~h~~~v~~~s~~~~~l~sgs~d-------~~i~~~d~~~~~~~~~~~~~h~~~~~---------------~~~~~~~g~ 243 (420)
T 4gga_A 186 TSHSARVGSLSWNSYILSSGSRS-------GHIHHHDVRVAEHHVATLSGHSQEVC---------------GLRWAPDGR 243 (420)
T ss_dssp CCCSSCEEEEEEETTEEEEEETT-------SEEEEEETTSSSCEEEEEECCSSCEE---------------EEEECTTSS
T ss_pred eCCCCceEEEeeCCCEEEEEeCC-------CceeEeeecccceeeEEeccccccee---------------eeeecCCCC
Confidence 22233344556678888877765 3477777765432211 11000000 111222566
Q ss_pred EEEEeCCCCeEEEEeCCCC
Q 043540 342 LYAADHEKEEVRKFDKGRK 360 (437)
Q Consensus 342 ly~~gg~~~~v~~yd~~~~ 360 (437)
.++.++..+.+.++|..+.
T Consensus 244 ~l~s~~~D~~v~i~~~~~~ 262 (420)
T 4gga_A 244 HLASGGNDNLVNVWPSAPG 262 (420)
T ss_dssp EEEEEETTSCEEEEESSCC
T ss_pred eeeeeeccccceEEeeccc
Confidence 6677777778888888664
No 192
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=94.08 E-value=3.3 Score=37.42 Aligned_cols=189 Identities=12% Similarity=0.107 Sum_probs=88.2
Q ss_pred cEEEEEecCceEEEeccCCC--CeeeCCCCCCccccccCCceeEEe----CCEEEEEcCccCCceEEEEECCCCc-----
Q 043540 140 HWVYFSCKLKEWEAFDPIHH--RWMHLPPMNASDCFMCADKESLAV----GTELLVFGKEVHGNAIYRYNLLTNT----- 208 (437)
Q Consensus 140 ~~l~~~~~~~~~~~yDp~~~--~W~~l~~~p~~~~~~~~~~~~~~~----~~~lyv~GG~~~~~~v~~yd~~t~~----- 208 (437)
.++........+..||..+. .+..+..+...... -..+.. ++.+++.|+.. ..+.+||..++.
T Consensus 24 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~----v~~~~~~~~~d~~~l~s~~~d--g~v~vwd~~~~~~~~~~ 97 (351)
T 3f3f_A 24 RHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSS----IVAIDWASPEYGRIIASASYD--KTVKLWEEDPDQEECSG 97 (351)
T ss_dssp SEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSC----EEEEEECCGGGCSEEEEEETT--SCEEEEEECTTSCTTSS
T ss_pred CEEEEeeCCCeEEEEECCCCCCcceecceeccCCCc----EEEEEEcCCCCCCEEEEEcCC--CeEEEEecCCCcccccc
Confidence 45555555566777777643 33322211111100 011222 25566666432 457778876642
Q ss_pred --eecCCCCCCCccceeeEEE--C--CEEEEEeccCCCCCCCceEEEEECCCCc----EEec-----CCC-CcC-CcCee
Q 043540 209 --WSTGMTMNTPRCLFGSASL--G--EIAILAGGCDPRGKLLKSAELYNSITGT----WMPI-----SSM-HKA-RKMCS 271 (437)
Q Consensus 209 --W~~~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~yd~~t~~----W~~~-----~~~-~~~-r~~~~ 271 (437)
|+.+..+.........+.+ + +..++.|+.+ ..+.+||..+.+ |... ... +.. .....
T Consensus 98 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (351)
T 3f3f_A 98 RRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGND------GILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDF 171 (351)
T ss_dssp CSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT------CEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCE
T ss_pred cCcceeeeecccCCceeEEEEcCCCCCcEEEEecCC------CcEEEecCCChHHhccccccccccccccccCCccccee
Confidence 3333222221222222222 2 5666776643 568889987654 2211 011 111 11112
Q ss_pred EEEE-----CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE-CC----E
Q 043540 272 GVFM-----DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV-NN----E 341 (437)
Q Consensus 272 ~~~~-----~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~ 341 (437)
.+.. ++.++++|+.. ..+..++...++...+..+...... + ..++.. ++ .
T Consensus 172 ~~~~~p~~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~h~~~----i---------~~~~~~p~~~~~~~ 231 (351)
T 3f3f_A 172 CLSWCPSRFSPEKLAVSALE-------QAIIYQRGKDGKLHVAAKLPGHKSL----I---------RSISWAPSIGRWYQ 231 (351)
T ss_dssp EEEECCCSSSCCEEEEEETT-------EEEEEEECTTSCEEEEEECCCCCSC----E---------EEEEECCCSSCSSE
T ss_pred EEEeccCCCCCcEEEEecCC-------CcEEEEccCCCceeeeeecCCCCcc----e---------eEEEECCCCCCcce
Confidence 2222 26677776654 1345566666665444333221111 0 122332 33 6
Q ss_pred EEEEeCCCCeEEEEeCCCC
Q 043540 342 LYAADHEKEEVRKFDKGRK 360 (437)
Q Consensus 342 ly~~gg~~~~v~~yd~~~~ 360 (437)
+++.|+..+.|.+||..+.
T Consensus 232 ~l~s~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 232 LIATGCKDGRIRIFKITEK 250 (351)
T ss_dssp EEEEEETTSCEEEEEEEEC
T ss_pred EEEEEcCCCeEEEEeCCCC
Confidence 7777777778888887653
No 193
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=94.04 E-value=3.7 Score=37.88 Aligned_cols=143 Identities=10% Similarity=0.028 Sum_probs=79.2
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeE-EECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCC
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSA-SLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISS 262 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 262 (437)
++.+|+.+.. ...+++||+.+++.+... .+ ..-.+.+ .-++++|+... ..+.+||+.+++.+.+..
T Consensus 60 ~~~l~~~d~~--~~~i~~~d~~~~~~~~~~-~~--~~v~~i~~~~dg~l~v~~~--------~gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 60 SGTAWWFNIL--ERELHELHLASGRKTVHA-LP--FMGSALAKISDSKQLIASD--------DGLFLRDTATGVLTLHAE 126 (326)
T ss_dssp TTEEEEEEGG--GTEEEEEETTTTEEEEEE-CS--SCEEEEEEEETTEEEEEET--------TEEEEEETTTCCEEEEEC
T ss_pred CCEEEEEECC--CCEEEEEECCCCcEEEEE-CC--CcceEEEEeCCCeEEEEEC--------CCEEEEECCCCcEEEEee
Confidence 3677777532 357999999888765432 12 1112222 34678877641 358999999999877654
Q ss_pred CCcCC--cCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE
Q 043540 263 MHKAR--KMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV 338 (437)
Q Consensus 263 ~~~~r--~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (437)
.+... .....+.+ +|++|+..... ........++.|| +++.+.+.. .... +..++..
T Consensus 127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~-~~~~~~~~l~~~~--~g~~~~~~~---~~~~-------------~~~i~~s 187 (326)
T 2ghs_A 127 LESDLPGNRSNDGRMHPSGALWIGTMGR-KAETGAGSIYHVA--KGKVTKLFA---DISI-------------PNSICFS 187 (326)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEET-TCCTTCEEEEEEE--TTEEEEEEE---EESS-------------EEEEEEC
T ss_pred CCCCCCCCCCCCEEECCCCCEEEEeCCC-cCCCCceEEEEEe--CCcEEEeeC---CCcc-------------cCCeEEc
Confidence 33211 11222333 68888743211 1112234688888 455554421 1001 0123332
Q ss_pred -CC-EEEEEeCCCCeEEEEeCC
Q 043540 339 -NN-ELYAADHEKEEVRKFDKG 358 (437)
Q Consensus 339 -~~-~ly~~gg~~~~v~~yd~~ 358 (437)
++ .||+.+...+.|++||..
T Consensus 188 ~dg~~lyv~~~~~~~I~~~d~~ 209 (326)
T 2ghs_A 188 PDGTTGYFVDTKVNRLMRVPLD 209 (326)
T ss_dssp TTSCEEEEEETTTCEEEEEEBC
T ss_pred CCCCEEEEEECCCCEEEEEEcc
Confidence 44 688887667889999975
No 194
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=93.96 E-value=3.1 Score=37.85 Aligned_cols=196 Identities=9% Similarity=0.068 Sum_probs=95.5
Q ss_pred cEEEEEecCceEEEeccC-CCCeeeCCCCCCccccccCCceeEEe-CCEEEEEcCccCCceEEEEECCCC-ceecCCCCC
Q 043540 140 HWVYFSCKLKEWEAFDPI-HHRWMHLPPMNASDCFMCADKESLAV-GTELLVFGKEVHGNAIYRYNLLTN-TWSTGMTMN 216 (437)
Q Consensus 140 ~~l~~~~~~~~~~~yDp~-~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~v~~yd~~t~-~W~~~~~~~ 216 (437)
..+++......+.+||+. ...|..-...+ .. ...+.. ++.||+.. ....++.||+... .|+...+
T Consensus 108 ~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~--~~-----~~~~~~~~g~l~vgt---~~~~l~~~d~~g~~~~~~~~~-- 175 (330)
T 3hxj_A 108 DILYVTSMDGHLYAINTDGTEKWRFKTKKA--IY-----ATPIVSEDGTIYVGS---NDNYLYAINPDGTEKWRFKTN-- 175 (330)
T ss_dssp TEEEEECTTSEEEEECTTSCEEEEEECSSC--CC-----SCCEECTTSCEEEEC---TTSEEEEECTTSCEEEEEECS--
T ss_pred CEEEEEecCCEEEEEcCCCCEEEEEcCCCc--ee-----eeeEEcCCCEEEEEc---CCCEEEEECCCCCEeEEEecC--
Confidence 345555555678899988 33565432211 10 111333 66777643 2256888998722 2544321
Q ss_pred CCccceeeEE-ECCEEEEEeccCCCCCCCceEEEEECCC-CcEEecCCCCcCCcCeeEEEE-CCEEEEEecccCCCCccC
Q 043540 217 TPRCLFGSAS-LGEIAILAGGCDPRGKLLKSAELYNSIT-GTWMPISSMHKARKMCSGVFM-DGKFYVIGGIGEGSSAML 293 (437)
Q Consensus 217 ~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t-~~W~~~~~~~~~r~~~~~~~~-~g~lyv~GG~~~~~~~~~ 293 (437)
... ..+.+. -++.||+.. ..+..||... ..|+..... .. ..+.+.. +|.||+....
T Consensus 176 ~~~-~~~~~~d~~g~l~v~t---------~~l~~~d~~g~~~~~~~~~~--~~-~~~~~~~~~g~l~v~t~~-------- 234 (330)
T 3hxj_A 176 DAI-TSAASIGKDGTIYFGS---------DKVYAINPDGTEKWNFYAGY--WT-VTRPAISEDGTIYVTSLD-------- 234 (330)
T ss_dssp SCC-CSCCEECTTCCEEEES---------SSEEEECTTSCEEEEECCSS--CC-CSCCEECTTSCEEEEETT--------
T ss_pred CCc-eeeeEEcCCCEEEEEe---------CEEEEECCCCcEEEEEccCC--cc-eeceEECCCCeEEEEcCC--------
Confidence 111 122233 367777653 3467888432 237654322 11 1222223 5678875321
Q ss_pred CeEEEEECCCCc-eEecCCCCCcccCCCCcccccccCCCCCEEEEE-CCEEEEEeCCCCeEEEEeCCCC-cEEEccCCCC
Q 043540 294 TDVEMYDLETGK-WTQITDMFPARIGSDGVSVISAAGEAPPLLAVV-NNELYAADHEKEEVRKFDKGRK-LWRTLGRLPE 370 (437)
Q Consensus 294 ~~v~~yd~~~~~-W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ly~~gg~~~~v~~yd~~~~-~W~~v~~lp~ 370 (437)
..+.+||+.... |+.-.. ..... ..+.. ++.||+.. ....+++||+..+ .|..- ++.
T Consensus 235 ~gl~~~~~~g~~~~~~~~~--~~~~~---------------~~~~~~~g~l~v~t-~~ggl~~~d~~g~~~~~~~--~~~ 294 (330)
T 3hxj_A 235 GHLYAINPDGTEKWRFKTG--KRIES---------------SPVIGNTDTIYFGS-YDGHLYAINPDGTEKWNFE--TGS 294 (330)
T ss_dssp TEEEEECTTSCEEEEEECS--SCCCS---------------CCEECTTSCEEEEC-TTCEEEEECTTSCEEEEEE--CSS
T ss_pred CeEEEECCCCCEeEEeeCC--CCccc---------------cceEcCCCeEEEec-CCCCEEEECCCCcEEEEEE--cCC
Confidence 237788875443 443211 11111 12333 67888764 3457999997433 36542 222
Q ss_pred cccCCCcccEEEEEeCCEEEEEc
Q 043540 371 QASSMNGWGLAFRACGDQLIVIG 393 (437)
Q Consensus 371 ~~~~~~~~~~a~~~~~~~l~v~G 393 (437)
... ...+...+++||+-+
T Consensus 295 ~~~-----~~~~~d~~g~l~~gt 312 (330)
T 3hxj_A 295 WII-----ATPVIDENGTIYFGT 312 (330)
T ss_dssp CCC-----SCCEECTTCCEEEEC
T ss_pred ccc-----cceEEcCCCEEEEEc
Confidence 211 111222567888753
No 195
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=93.79 E-value=5.1 Score=38.62 Aligned_cols=64 Identities=9% Similarity=-0.005 Sum_probs=36.1
Q ss_pred CEEEEEcCccCCceEEEEECCCCceecC-CCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcE
Q 043540 185 TELLVFGKEVHGNAIYRYNLLTNTWSTG-MTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTW 257 (437)
Q Consensus 185 ~~lyv~GG~~~~~~v~~yd~~t~~W~~~-~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W 257 (437)
+.+++.|+.. ..+.+||..+++.... ..-........... ++..++.|+.+ ..+.+||..+++.
T Consensus 210 ~~~l~s~~~d--~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d------~~v~vwd~~~~~~ 274 (450)
T 2vdu_B 210 HQFIITSDRD--EHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGD------DKIFAWDWKTGKN 274 (450)
T ss_dssp CEEEEEEETT--SCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESS------SEEEEEETTTCCE
T ss_pred CcEEEEEcCC--CcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCC------CeEEEEECCCCcE
Confidence 6677766533 4688899877653321 10011111111222 67777777743 5788999988774
No 196
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=93.78 E-value=3 Score=36.03 Aligned_cols=152 Identities=5% Similarity=-0.034 Sum_probs=78.1
Q ss_pred eeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEE--ec----CCCCcCCcCeeEEEE--CCEEEEEecccCCCCccCC
Q 043540 223 GSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWM--PI----SSMHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLT 294 (437)
Q Consensus 223 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~--~~----~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~ 294 (437)
+++.+++++|++-| ..+|+++.....+. .+ +.+|. .--++... ++++|++-|..
T Consensus 28 Ai~~~~g~~y~Fkg--------~~~wr~~~~~~~~~p~~I~~~wp~Lp~--~iDAa~~~~~~~~iyfFkG~~-------- 89 (207)
T 1pex_A 28 AITSLRGETMIFKD--------RFFWRLHPQQVDAELFLTKSFWPELPN--RIDAAYEHPSHDLIFIFRGRK-------- 89 (207)
T ss_dssp EEEEETTEEEEEET--------TEEEEECSSSSCCEEEEHHHHCTTSCS--SCCEEEEETTTTEEEEEETTE--------
T ss_pred EEEeCCCcEEEEEC--------CEEEEEeCCCcCCCceehhHhccCCCC--CccEEEEeccCCcEEEEccCE--------
Confidence 45567999999976 45677765543332 11 23342 12223333 59999997754
Q ss_pred eEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE--CCEEEEEeCCCCeEEEEeCCCCcEEEccCCCCcc
Q 043540 295 DVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV--NNELYAADHEKEEVRKFDKGRKLWRTLGRLPEQA 372 (437)
Q Consensus 295 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~~~ 372 (437)
+++|+-.+ ..+..|..... ..+|..-...-+++.. ++++|++- .+..|+||..+++=. ..-|...
T Consensus 90 -~w~~~~~~----~~~gyPk~I~~----~GlP~~~~~IDAA~~~~~~gk~yfFk--G~~ywr~d~~~~~~d--~gyPr~i 156 (207)
T 1pex_A 90 -FWALNGYD----ILEGYPKKISE----LGLPKEVKKISAAVHFEDTGKTLLFS--GNQVWRYDDTNHIMD--KDYPRLI 156 (207)
T ss_dssp -EEEESTTC----CCTTCSEESTT----TTCCTTCCCCCEEEECTTTSEEEEEE--TTEEEEEETTTTEEC--SSCCCBH
T ss_pred -EEEEeCCe----eccCCceeccc----cCCCCCCccccEEEEeCCCCEEEEEe--CCEEEEEeCcCcccc--CCCCccH
Confidence 77776322 12111111110 0011000000223333 48999994 468999998765311 1111111
Q ss_pred c-----CCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCC
Q 043540 373 S-----SMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPH 416 (437)
Q Consensus 373 ~-----~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~ 416 (437)
. ......+|+ ..++++|++-|.. .|+||..+.+
T Consensus 157 ~~~~~Gip~~iDaAf-~~~g~~YfFkg~~----------y~rf~~~~~~ 194 (207)
T 1pex_A 157 EEDFPGIGDKVDAVY-EKNGYIYFFNGPI----------QFEYSIWSNR 194 (207)
T ss_dssp HHHSTTSCSCCSEEE-EETTEEEEEETTE----------EEEEETTTTE
T ss_pred HHcCCCCCCCccEEE-EcCCcEEEEECCE----------EEEEeCCccE
Confidence 0 001123555 4589999997754 7888876553
No 197
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=93.74 E-value=4.2 Score=37.60 Aligned_cols=172 Identities=10% Similarity=0.026 Sum_probs=87.8
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCC-CCCCc-cceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecC
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMT-MNTPR-CLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPIS 261 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~-~~~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 261 (437)
.+.+|+.|. ...++...-.-.+|+.+.. .+.+. ...++...++.+|++|.. ..+++-+=.-.+|+.+.
T Consensus 46 ~~~~~~~G~---~g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~-------g~i~~S~DgG~tW~~~~ 115 (327)
T 2xbg_A 46 RHHGWLVGV---NATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEP-------PIMLHTTDGGQSWSQIP 115 (327)
T ss_dssp SSCEEEEET---TTEEEEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEET-------TEEEEESSTTSSCEECC
T ss_pred CCcEEEEcC---CCeEEEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECC-------CeEEEECCCCCCceECc
Confidence 466787763 2245554444568998753 22222 223444456788887531 22333211245799986
Q ss_pred CCC-cCCcCeeEE-EECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE-
Q 043540 262 SMH-KARKMCSGV-FMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV- 338 (437)
Q Consensus 262 ~~~-~~r~~~~~~-~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 338 (437)
... .+.....++ .-++.+|+.+... .++.-+-.-.+|+.+....... . ..++..
T Consensus 116 ~~~~~~~~~~~i~~~~~~~~~~~~~~g--------~v~~S~DgG~tW~~~~~~~~~~-~--------------~~~~~~~ 172 (327)
T 2xbg_A 116 LDPKLPGSPRLIKALGNGSAEMITNVG--------AIYRTKDSGKNWQALVQEAIGV-M--------------RNLNRSP 172 (327)
T ss_dssp CCTTCSSCEEEEEEEETTEEEEEETTC--------CEEEESSTTSSEEEEECSCCCC-E--------------EEEEECT
T ss_pred cccCCCCCeEEEEEECCCCEEEEeCCc--------cEEEEcCCCCCCEEeecCCCcc-e--------------EEEEEcC
Confidence 432 122223333 3478888876432 2444443456899886422211 1 122322
Q ss_pred CCEEEEEeCCCCeEEEEeCC-CCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcC
Q 043540 339 NNELYAADHEKEEVRKFDKG-RKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGG 394 (437)
Q Consensus 339 ~~~ly~~gg~~~~v~~yd~~-~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG 394 (437)
++++|++|.. ..+++-+-. -.+|+.+.. +.... +......-++++|+++.
T Consensus 173 ~~~~~~~g~~-G~~~~S~d~gG~tW~~~~~-~~~~~----~~~~~~~~~g~~~~~~~ 223 (327)
T 2xbg_A 173 SGEYVAVSSR-GSFYSTWEPGQTAWEPHNR-TTSRR----LHNMGFTPDGRLWMIVN 223 (327)
T ss_dssp TSCEEEEETT-SSEEEEECTTCSSCEEEEC-CSSSC----EEEEEECTTSCEEEEET
T ss_pred CCcEEEEECC-CcEEEEeCCCCCceeECCC-CCCCc----cceeEECCCCCEEEEeC
Confidence 5677777643 445555433 678999853 22211 11111223568887763
No 198
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=93.73 E-value=3.8 Score=36.98 Aligned_cols=194 Identities=13% Similarity=0.105 Sum_probs=95.2
Q ss_pred CCEEEEEcCccCCceEEEEECCCC--ceecCCCCCCCccceeeEEE----CCEEEEEeccCCCCCCCceEEEEECCCC--
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTN--TWSTGMTMNTPRCLFGSASL----GEIAILAGGCDPRGKLLKSAELYNSITG-- 255 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~--~W~~~~~~~~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~yd~~t~-- 255 (437)
++.+++.|+. ...+.+||..++ .++.+..+........++.+ ++.+++.|+.+ ..+.+||..++
T Consensus 22 ~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~d------g~v~vwd~~~~~~ 93 (351)
T 3f3f_A 22 YGRHVATCSS--DQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYD------KTVKLWEEDPDQE 93 (351)
T ss_dssp SSSEEEEEET--TSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETT------SCEEEEEECTTSC
T ss_pred CCCEEEEeeC--CCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCC------CeEEEEecCCCcc
Confidence 4445555543 245777777643 33333222211222222222 26777777754 45777887664
Q ss_pred -----cEEecCCCCcCCcCeeEEEE--C--CEEEEEecccCCCCccCCeEEEEECCCCc----eEec---CCCCCcccCC
Q 043540 256 -----TWMPISSMHKARKMCSGVFM--D--GKFYVIGGIGEGSSAMLTDVEMYDLETGK----WTQI---TDMFPARIGS 319 (437)
Q Consensus 256 -----~W~~~~~~~~~r~~~~~~~~--~--g~lyv~GG~~~~~~~~~~~v~~yd~~~~~----W~~~---~~~~~~~~~~ 319 (437)
.|+.+..+.........+.+ + +.+++.|+.+ ..+..||+.+.+ |... ..+......+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (351)
T 3f3f_A 94 ECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGND-------GILRLYDALEPSDLRSWTLTSEMKVLSIPPANH 166 (351)
T ss_dssp TTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT-------CEEEEEECSSTTCTTCCEEEEEEESCSCCCSSC
T ss_pred cccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCC-------CcEEEecCCChHHhccccccccccccccccCCc
Confidence 34444333333333333333 3 6677777654 358889987654 2211 0111000010
Q ss_pred CCcccccccCCCCCEEEEE-----CCEEEEEeCCCCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCC-----EE
Q 043540 320 DGVSVISAAGEAPPLLAVV-----NNELYAADHEKEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGD-----QL 389 (437)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~-----~~~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~-----~l 389 (437)
......+.. ++.++++++....+..++........+..+...... -.++....+ ++
T Consensus 167 ----------~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~----i~~~~~~p~~~~~~~~ 232 (351)
T 3f3f_A 167 ----------LQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSL----IRSISWAPSIGRWYQL 232 (351)
T ss_dssp ----------SCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSC----EEEEEECCCSSCSSEE
T ss_pred ----------ccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcc----eeEEEECCCCCCcceE
Confidence 000112222 367777777777777777777777665554432221 122223333 78
Q ss_pred EEEcCCCCCCCCeeEEEeeecCC
Q 043540 390 IVIGGPRDSGGGIVELNGWVPDE 412 (437)
Q Consensus 390 ~v~GG~~~~~~~~~~~~~~~~d~ 412 (437)
++.|+.+. .+.+|..+.
T Consensus 233 l~s~~~dg------~i~iwd~~~ 249 (351)
T 3f3f_A 233 IATGCKDG------RIRIFKITE 249 (351)
T ss_dssp EEEEETTS------CEEEEEEEE
T ss_pred EEEEcCCC------eEEEEeCCC
Confidence 88887542 366776653
No 199
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=93.70 E-value=1.3 Score=44.56 Aligned_cols=196 Identities=12% Similarity=0.032 Sum_probs=97.1
Q ss_pred cEEEEEecCceEEEecc--CCCCee-eCCCCCCccccccCCceeEEe----CC-EEEEEcCccCCceEEEEECCCCceec
Q 043540 140 HWVYFSCKLKEWEAFDP--IHHRWM-HLPPMNASDCFMCADKESLAV----GT-ELLVFGKEVHGNAIYRYNLLTNTWST 211 (437)
Q Consensus 140 ~~l~~~~~~~~~~~yDp--~~~~W~-~l~~~p~~~~~~~~~~~~~~~----~~-~lyv~GG~~~~~~v~~yd~~t~~W~~ 211 (437)
.++|+......+..||+ .+.+-. .++.-..++ +..+.- ++ .+|+.. ...+.+.++|..|.+-..
T Consensus 191 ~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~------~va~sp~~~~dg~~l~v~~--~~~~~v~v~D~~t~~~~~ 262 (543)
T 1nir_A 191 RYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEAR------SVESSKFKGYEDRYTIAGA--YWPPQFAIMDGETLEPKQ 262 (543)
T ss_dssp CEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEE------EEEECCSTTCTTTEEEEEE--EESSEEEEEETTTCCEEE
T ss_pred CEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcc------eEEeCCCcCCCCCEEEEEE--ccCCeEEEEeccccccce
Confidence 45666555577888998 554321 222111111 111222 33 555543 124568889987765332
Q ss_pred -CC--CC--------CCCccceeeEEE-CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE-CCE
Q 043540 212 -GM--TM--------NTPRCLFGSASL-GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM-DGK 278 (437)
Q Consensus 212 -~~--~~--------~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~g~ 278 (437)
++ .+ +.+|........ +..+|+.... ...+.++|..+.+-..+..++..+.-+..++- +|+
T Consensus 263 ~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~------~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~ 336 (543)
T 1nir_A 263 IVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE------TGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHR 336 (543)
T ss_dssp EEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT------TTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSC
T ss_pred eecccCcccCccccccCCceEEEEECCCCCEEEEEECC------CCeEEEEEecCCCcceeEEeccCcCccCceECCCCC
Confidence 21 11 111221222222 4455555431 36788899876542111122223333334433 566
Q ss_pred -EEEEecccCCCCccCCeEEEEECCCCceEecC---CCCCcccCCCCcccccccCCCCCEEEEE--CCEEEEEeC-CCCe
Q 043540 279 -FYVIGGIGEGSSAMLTDVEMYDLETGKWTQIT---DMFPARIGSDGVSVISAAGEAPPLLAVV--NNELYAADH-EKEE 351 (437)
Q Consensus 279 -lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ly~~gg-~~~~ 351 (437)
+|+.+... +.+.++|+.+++-...- ..|.+..+ ..... ++.+|+.+. ..+.
T Consensus 337 ~l~va~~~~-------~~v~v~D~~tg~l~~~i~~g~~ph~g~g---------------~~~~~p~~g~~~~s~~~~d~~ 394 (543)
T 1nir_A 337 YFMTAANNS-------NKVAVIDSKDRRLSALVDVGKTPHPGRG---------------ANFVHPKYGPVWSTSHLGDGS 394 (543)
T ss_dssp EEEEEEGGG-------TEEEEEETTTTEEEEEEECSSSBCCTTC---------------EEEEETTTEEEEEEEBSSSSE
T ss_pred EEEEEecCC-------CeEEEEECCCCeEEEeeccCCCCCCCCC---------------cccCCCCCccEEEeccCCCce
Confidence 45543322 46888999998654321 12222112 11222 378888764 3578
Q ss_pred EEEEeCCCC-----cEEEccCCCCc
Q 043540 352 VRKFDKGRK-----LWRTLGRLPEQ 371 (437)
Q Consensus 352 v~~yd~~~~-----~W~~v~~lp~~ 371 (437)
|.+||..+. .|+.+..++..
T Consensus 395 V~v~d~~~~~~~~~~~~~v~~l~~~ 419 (543)
T 1nir_A 395 ISLIGTDPKNHPQYAWKKVAELQGQ 419 (543)
T ss_dssp EEEEECCTTTCTTTBTSEEEEEECS
T ss_pred EEEEEeCCCCCchhcCeEEEEEEcC
Confidence 999998772 38777666543
No 200
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=93.66 E-value=0.022 Score=57.99 Aligned_cols=37 Identities=3% Similarity=0.137 Sum_probs=29.0
Q ss_pred CCCCCCCCHHHHHHHhhccC-ccchhhHHHHhHHHHHh
Q 043540 86 NSLIPELGRDITINCLLRCS-RSDYGAIASLNRAFRSL 122 (437)
Q Consensus 86 ~~~~~~LP~dl~~~~L~rlP-~~~~~~~~~V~k~w~sl 122 (437)
...|..||+|++..||.+|| ..+..+++.|||+|+.+
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 35678899999999999999 88999999999999987
No 201
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=93.64 E-value=4.1 Score=42.58 Aligned_cols=149 Identities=13% Similarity=0.062 Sum_probs=83.3
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCC
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSM 263 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 263 (437)
++.|++-. ..-+++||+.++++...... ....-.....-++.|+|... ..+.+||+.+++.+.....
T Consensus 73 ~g~lWigT----~~Gl~~yd~~~~~f~~~~~~-~~~~i~~i~~~~g~lWigt~--------~Gl~~~~~~~~~~~~~~~~ 139 (758)
T 3ott_A 73 NTYLYMGT----DNGILVYNYRADRYEQPETD-FPTDVRTMALQGDTLWLGAL--------NGLYTYQLQSRKLTSFDTR 139 (758)
T ss_dssp TTEEEEEE----TTEEEEEETTTTEECCCSCC-CCSCEEEEEEETTEEEEEET--------TEEEEEETTTCCEEEECHH
T ss_pred CCcEEEEe----CCCeEEEeCCCCEEECcccC-CCceEEEEEecCCcEEEEcC--------CcceeEeCCCCeEEEeccC
Confidence 56777643 24588999999988752111 11111123334778877521 3578999999988766311
Q ss_pred C--cCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCC-cccCCCCcccccccCCCCCEEEEE
Q 043540 264 H--KARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFP-ARIGSDGVSVISAAGEAPPLLAVV 338 (437)
Q Consensus 264 ~--~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 338 (437)
. .+......... +|.|+|... .-+..||+.+++++.+..... .... .....++..
T Consensus 140 ~~~l~~~~i~~i~~d~~g~lWigt~---------~Gl~~~~~~~~~~~~~~~~~~~~~~~-----------~~i~~i~~d 199 (758)
T 3ott_A 140 RNGLPNNTIYSIIRTKDNQIYVGTY---------NGLCRYIPSNGKFEGIPLPVHSSQSN-----------LFVNSLLED 199 (758)
T ss_dssp HHCCSCSCEEEEEECTTCCEEEEET---------TEEEEEETTTTEEEEECCCCCTTCSS-----------CCEEEEEEE
T ss_pred CCCcCCCeEEEEEEcCCCCEEEEeC---------CCHhhCccCCCceEEecCCCcccccc-----------ceeEEEEEE
Confidence 1 11112222233 678887422 137889999988876542111 0111 000123333
Q ss_pred -C-CEEEEEeCCCCeEEEEeCCCCcEEEccC
Q 043540 339 -N-NELYAADHEKEEVRKFDKGRKLWRTLGR 367 (437)
Q Consensus 339 -~-~~ly~~gg~~~~v~~yd~~~~~W~~v~~ 367 (437)
+ +.|++.. ...+++||+.++++.....
T Consensus 200 ~~~~~lWigt--~~Gl~~~~~~~~~~~~~~~ 228 (758)
T 3ott_A 200 TTRQCVWIGT--EGYLFQYFPSTGQIKQTEA 228 (758)
T ss_dssp TTTTEEEEEE--EEEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEEE--CCCCeEEcCCCCeEEeccC
Confidence 2 3567643 3479999999998876643
No 202
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=93.63 E-value=0.7 Score=44.70 Aligned_cols=108 Identities=9% Similarity=-0.022 Sum_probs=60.3
Q ss_pred CEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcC-eeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCCc
Q 043540 229 EIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKM-CSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGK 305 (437)
Q Consensus 229 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~-~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~ 305 (437)
+.+++.|+.+ ..+.++|..++.-..+-.+...... .++.+. ++.+++.|+.+ ..+..||++++.
T Consensus 132 ~~~lasGs~d------g~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D-------~~v~iwd~~~~~ 198 (435)
T 4e54_B 132 PSTVAVGSKG------GDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME-------GTTRLQDFKGNI 198 (435)
T ss_dssp TTCEEEEETT------SCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS-------SCEEEEETTSCE
T ss_pred CCEEEEEeCC------CEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC-------CEEEEeeccCCc
Confidence 3455666654 4577788876653322222211222 233332 56777777765 248889998876
Q ss_pred eEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCc
Q 043540 306 WTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKL 361 (437)
Q Consensus 306 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~ 361 (437)
...+......... .......-++.+++.|+..+.|..||...+.
T Consensus 199 ~~~~~~~~~~~~~------------~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~ 242 (435)
T 4e54_B 199 LRVFASSDTINIW------------FCSLDVSASSRMVVTGDNVGNVILLNMDGKE 242 (435)
T ss_dssp EEEEECCSSCSCC------------CCCEEEETTTTEEEEECSSSBEEEEESSSCB
T ss_pred eeEEeccCCCCcc------------EEEEEECCCCCEEEEEeCCCcEeeeccCcce
Confidence 6554322111111 0012223367888888888899999987643
No 203
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=93.62 E-value=3.1 Score=35.61 Aligned_cols=147 Identities=11% Similarity=0.153 Sum_probs=79.6
Q ss_pred eeEEeCCEEEEEcCccCCceEEEEECCCC-----------ceecCCCCCCCccceeeEEE--CCEEEEEeccCCCCCCCc
Q 043540 179 ESLAVGTELLVFGKEVHGNAIYRYNLLTN-----------TWSTGMTMNTPRCLFGSASL--GEIAILAGGCDPRGKLLK 245 (437)
Q Consensus 179 ~~~~~~~~lyv~GG~~~~~~v~~yd~~t~-----------~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~ 245 (437)
+++..++++|+|=| +.+|.++.... .|.. +|.. --++... ++++|++-| +
T Consensus 11 Ai~~~~g~~yfFkg----~~~Wr~~~~~~~~~~~p~~Is~~w~g---lP~~--IDAa~~~~~~~~~yfFkG--------~ 73 (195)
T 1itv_A 11 AIAEIGNQLYLFKD----GKYWRFSEGRGSRPQGPFLIADKWPA---LPRK--LDSVFEEPLSKKLFFFSG--------R 73 (195)
T ss_dssp EEEEETTEEEEEET----TEEEEECCSSSCCCEEEEEHHHHCTT---SCSS--CSEEEECTTTCCEEEEET--------T
T ss_pred EEEEeCCEEEEEEC----CEEEEEECCccccCCCcEEhhhccCC---CCCC--ccEEEEECCCCeEEEEeC--------C
Confidence 34567999999954 35677766442 2333 3321 1122222 688999987 5
Q ss_pred eEEEEECCCCcE-EecCC--CCcCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCC--CcccC
Q 043540 246 SAELYNSITGTW-MPISS--MHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMF--PARIG 318 (437)
Q Consensus 246 ~~~~yd~~t~~W-~~~~~--~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~--~~~~~ 318 (437)
..++|+..+-.- +.+.. +|......-+++. +|++|++-|.. .+.||..+++-..--+-+ ....+
T Consensus 74 ~yw~~~~~~~~~Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg~~---------ywr~d~~~~~~~~gyPr~i~~~w~G 144 (195)
T 1itv_A 74 QVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSGRR---------LWRFDVKAQMVDPRSASEVDRMFPG 144 (195)
T ss_dssp EEEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEETTE---------EEEEETTTTEECGGGCEEHHHHSTT
T ss_pred EEEEEcCCccCCCEEeeecccCCCccceeEEEEcCCCeEEEEeCCE---------EEEEeCCcccccCCCccChhhcCCC
Confidence 567887542111 11212 2221112334433 68999997754 889998876422110000 00001
Q ss_pred CCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCcE
Q 043540 319 SDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKLW 362 (437)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~W 362 (437)
+| ....++...+|.+|++- ....++||..+..=
T Consensus 145 ------vp---~~idaa~~~~g~~Yffk--g~~y~~~~~~~~~v 177 (195)
T 1itv_A 145 ------VP---LDTHDVFQFREKAYFCQ--DRFYWRVSSRSELN 177 (195)
T ss_dssp ------SC---SSCSEEEEETTEEEEEE--TTEEEEEECCTTCC
T ss_pred ------CC---CCCCEEEEeCCeEEEEe--CCEEEEEECCccEE
Confidence 00 00135666789999995 45789999987653
No 204
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=93.59 E-value=4.2 Score=39.06 Aligned_cols=186 Identities=11% Similarity=-0.015 Sum_probs=89.5
Q ss_pred EEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEE--eCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCc
Q 043540 142 VYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLA--VGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPR 219 (437)
Q Consensus 142 l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r 219 (437)
|........+..||..+..-..+-.+..... .. ..+.. .++.+++.|+.. ..+.+||..++..+.+.......
T Consensus 135 lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~--~V-~~l~f~p~~~~~l~s~s~D--~~v~iwd~~~~~~~~~~~~~~~~ 209 (435)
T 4e54_B 135 VAVGSKGGDIMLWNFGIKDKPTFIKGIGAGG--SI-TGLKFNPLNTNQFYASSME--GTTRLQDFKGNILRVFASSDTIN 209 (435)
T ss_dssp EEEEETTSCEEEECSSCCSCCEEECCCSSSC--CC-CEEEECSSCTTEEEEECSS--SCEEEEETTSCEEEEEECCSSCS
T ss_pred EEEEeCCCEEEEEECCCCCceeEEEccCCCC--CE-EEEEEeCCCCCEEEEEeCC--CEEEEeeccCCceeEEeccCCCC
Confidence 3343445667778877654322211111100 01 11122 245555555433 45788898877665443222211
Q ss_pred cce-eeE-EECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE--CC-EEEEEecccCCCCccCC
Q 043540 220 CLF-GSA-SLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM--DG-KFYVIGGIGEGSSAMLT 294 (437)
Q Consensus 220 ~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~g-~lyv~GG~~~~~~~~~~ 294 (437)
... ++. .-++.+++.|+.+ ..+.++|..... +..+.........+.+ ++ .+++.|+.+ .
T Consensus 210 ~~~~~~~~~~~~~~l~~g~~d------g~i~~wd~~~~~---~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d-------~ 273 (435)
T 4e54_B 210 IWFCSLDVSASSRMVVTGDNV------GNVILLNMDGKE---LWNLRMHKKKVTHVALNPCCDWFLATASVD-------Q 273 (435)
T ss_dssp CCCCCEEEETTTTEEEEECSS------SBEEEEESSSCB---CCCSBCCSSCEEEEEECTTCSSEEEEEETT-------S
T ss_pred ccEEEEEECCCCCEEEEEeCC------CcEeeeccCcce---eEEEecccceEEeeeecCCCceEEEEecCc-------c
Confidence 112 222 2356777777754 457888886542 2233322233333443 33 466666654 2
Q ss_pred eEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEE--ECCEEEEEeCCCCeEEEEeCCCCc
Q 043540 295 DVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV--VNNELYAADHEKEEVRKFDKGRKL 361 (437)
Q Consensus 295 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ly~~gg~~~~v~~yd~~~~~ 361 (437)
.+..||+.+.+-...-........ . -..+. -++..++.|+..+.|.+||..+..
T Consensus 274 ~v~iwd~~~~~~~~~~~~~~~h~~---~----------v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~ 329 (435)
T 4e54_B 274 TVKIWDLRQVRGKASFLYSLPHRH---P----------VNAACFSPDGARLLTTDQKSEIRVYSASQWD 329 (435)
T ss_dssp BCCEEETTTCCSSSCCSBCCBCSS---C----------EEECCBCTTSSEEEEEESSSCEEEEESSSSS
T ss_pred eeeEEecccccccceEEEeeeccc---c----------ccceeECCCCCeeEEEcCCCEEEEEECCCCc
Confidence 466788876432111000011111 0 00111 156667777777789999987643
No 205
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=93.55 E-value=2.8 Score=36.76 Aligned_cols=146 Identities=11% Similarity=0.093 Sum_probs=78.3
Q ss_pred eCCEEEEEcCccCCceEEEEE---------------CCCCceecCCCCCCCccceeeEE--ECCEEEEEeccCCCCCCCc
Q 043540 183 VGTELLVFGKEVHGNAIYRYN---------------LLTNTWSTGMTMNTPRCLFGSAS--LGEIAILAGGCDPRGKLLK 245 (437)
Q Consensus 183 ~~~~lyv~GG~~~~~~v~~yd---------------~~t~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~ 245 (437)
.++++|+|-| ..+|.++ +.+..|..+|.-+......-++. .++++|++-| +
T Consensus 12 ~~ge~~fFk~----~~~wr~~~~~~~~~~~~~~~p~~I~~~Wp~LP~~~f~~~~iDAa~~~~~g~~~fFkg--------~ 79 (225)
T 3oyo_A 12 SEYEVYFFAK----NKYVRLHYTPGASSDTILTNLRLISSGFPSLAGTPFAEPGIDCSFHTEASEAYVFSG--------N 79 (225)
T ss_dssp STTEEEEEET----TEEEEEECCTTCSCCEEEEEEEEHHHHCGGGTTSTTTTTCCSEEEECSTTEEEEEET--------T
T ss_pred CCCEEEEEEC----CEEEEEecccccccCcccCCceehhhhcccCCCccCCCCCEeEEEEcCCCeEEEEcC--------C
Confidence 4789999964 3466666 12334555553222222333333 5799999977 5
Q ss_pred eEEEEECCCC----cEEec--------CCCCcC--CcCeeEEEE---CCEEEEEecccCCCCccCCeEEEEECCCCceEe
Q 043540 246 SAELYNSITG----TWMPI--------SSMHKA--RKMCSGVFM---DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQ 308 (437)
Q Consensus 246 ~~~~yd~~t~----~W~~~--------~~~~~~--r~~~~~~~~---~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~ 308 (437)
..|+||..++ .-..- +.+|.. ...--+++. ++++|++-|.. .++||..+++...
T Consensus 80 ~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~IDAA~~~~~~gk~yfFkG~~---------yw~~d~~~~~~~~ 150 (225)
T 3oyo_A 80 HSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSAFRSTKGKEVYLFKGNK---------YVRIAYDSKQLVG 150 (225)
T ss_dssp EEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCCEEEECSSTTEEEEEETTE---------EEEEETTTTEEEE
T ss_pred EEEEEecccccCCCceecCchhhhhcCCCCCCcccccccceEEEECCCCcEEEEeCCe---------EEEEECCCCeecC
Confidence 6788876432 12110 122321 112233433 69999998765 8999987766543
Q ss_pred cC-----CCCCcccCCCCcccccccCCCCCEEEE--ECCEEEEEeCCCCeEEEEeCCC
Q 043540 309 IT-----DMFPARIGSDGVSVISAAGEAPPLLAV--VNNELYAADHEKEEVRKFDKGR 359 (437)
Q Consensus 309 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ly~~gg~~~~v~~yd~~~ 359 (437)
-+ ..|... ++ ..| ...-++.. .++++|++- .+..|+||..+
T Consensus 151 gPk~I~~~fpg~~-~~----~f~---~~iDAAf~~~~~g~~YfFk--G~~ywr~d~~~ 198 (225)
T 3oyo_A 151 NIRNIGDGFPVLN-GT----EFE---SGIDACFASHKEPEAYLFK--GQNYVRIDFTP 198 (225)
T ss_dssp EEEEHHHHCGGGT-TS----TTT---TCCSEEEECSSTTEEEEEE--TTEEEEEECCT
T ss_pred CCcchhhcCCCcc-cc----cCC---CCcCEEEEeCCCCEEEEEE--CCEEEEEeCCc
Confidence 11 111100 00 000 00023444 378999994 46799999983
No 206
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=93.54 E-value=3.8 Score=38.42 Aligned_cols=190 Identities=7% Similarity=-0.048 Sum_probs=96.0
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEE-ECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCC
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSAS-LGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISS 262 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 262 (437)
++++.++++......+.++|+.+.+-..... ....-..++. -++++++.++. ..+.+++..++.-.....
T Consensus 144 Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~--~~~~V~~v~fspdg~~l~s~s~-------~~~~~~~~~~~~~~~~~~ 214 (365)
T 4h5i_A 144 EGTVAAIASSKVPAIMRIIDPSDLTEKFEIE--TRGEVKDLHFSTDGKVVAYITG-------SSLEVISTVTGSCIARKT 214 (365)
T ss_dssp TSSCEEEEESCSSCEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSSEEEEECS-------SCEEEEETTTCCEEEEEC
T ss_pred CCCEEEEEECCCCCEEEEeECCCCcEEEEeC--CCCceEEEEEccCCceEEeccc-------eeEEEEEeccCcceeeee
Confidence 5555554433344578889998876543221 1111112222 25666665542 346778877776543222
Q ss_pred CCcCCcCee--EEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCC--CCCcccCCCCcccccccCCCCCEEEE-
Q 043540 263 MHKARKMCS--GVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITD--MFPARIGSDGVSVISAAGEAPPLLAV- 337 (437)
Q Consensus 263 ~~~~r~~~~--~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~- 337 (437)
......... +..-+++.++.++... .....+..+|........... +...... -..+.
T Consensus 215 ~~~~~~~v~~v~fspdg~~l~~~s~d~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--------------V~~~~~ 277 (365)
T 4h5i_A 215 DFDKNWSLSKINFIADDTVLIAASLKK---GKGIVLTKISIKSGNTSVLRSKQVTNRFKG--------------ITSMDV 277 (365)
T ss_dssp CCCTTEEEEEEEEEETTEEEEEEEESS---SCCEEEEEEEEETTEEEEEEEEEEESSCSC--------------EEEEEE
T ss_pred cCCCCCCEEEEEEcCCCCEEEEEecCC---cceeEEeecccccceecceeeeeecCCCCC--------------eEeEEE
Confidence 221111122 2234888888877651 112235667766655543321 1111111 11122
Q ss_pred -ECCEEEEEeCCCCeEEEEeCCCCcEEE-ccCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeec
Q 043540 338 -VNNELYAADHEKEEVRKFDKGRKLWRT-LGRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVP 410 (437)
Q Consensus 338 -~~~~ly~~gg~~~~v~~yd~~~~~W~~-v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~ 410 (437)
-+|++++.|+..+.|.+||.++.+-.. +..-..... ..+++ .-++++++.|+.+ .++.+|..
T Consensus 278 Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V----~~v~f-Spdg~~laS~S~D------~tvrvw~i 341 (365)
T 4h5i_A 278 DMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAI----TEVTI-SPDSTYVASVSAA------NTIHIIKL 341 (365)
T ss_dssp CTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCE----EEEEE-CTTSCEEEEEETT------SEEEEEEC
T ss_pred CCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCE----EEEEE-CCCCCEEEEEeCC------CeEEEEEc
Confidence 378888888888889999998865322 211111100 11222 2357777777654 35778875
No 207
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=93.53 E-value=6 Score=38.69 Aligned_cols=213 Identities=16% Similarity=0.145 Sum_probs=109.8
Q ss_pred CceEEEeccCCCCeee--CCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCcee------------cCC
Q 043540 148 LKEWEAFDPIHHRWMH--LPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTWS------------TGM 213 (437)
Q Consensus 148 ~~~~~~yDp~~~~W~~--l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~------------~~~ 213 (437)
.+..+.||..+++... .+.+|. . .++....+++|+|-| +..+.||+.+++=. .++
T Consensus 166 G~~yw~yd~~~~~~~~~~w~gi~~--i-----DAA~~~~g~~YfFkG----~~y~rfd~~~~~v~~gyPk~is~~w~~c~ 234 (460)
T 1qhu_A 166 GNRKWFWDLTTGTKKERSWPAVGN--C-----TSALRWLGRYYCFQG----NQFLRFNPVSGEVPPGYPLDVRDYFLSCP 234 (460)
T ss_dssp TTEEEEEETTTTEEEEECCTTSCC--C-----SEEEEETTEEEEEET----TEEEEECTTTCCCCTTCCEEHHHHTSCCT
T ss_pred cccEEEEecccceeecccCCCCCc--c-----chheeeCCceEEEEC----CEEEEEcCccCcccCCCCcchhhcccCCC
Confidence 4567899988765432 122221 1 123556789999965 46788998765322 111
Q ss_pred CCC------------------CCccceeeE-E-ECCEEEEEeccCCCCCCCceEEEEECCCCcEE--ec----CCCCcCC
Q 043540 214 TMN------------------TPRCLFGSA-S-LGEIAILAGGCDPRGKLLKSAELYNSITGTWM--PI----SSMHKAR 267 (437)
Q Consensus 214 ~~~------------------~~r~~~~~~-~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~--~~----~~~~~~r 267 (437)
... .+...+.++ . .++++|++-| +..+++|...+.+. .+ +.+|.
T Consensus 235 ~~g~~~~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~tYFFKg--------~~yWR~~~~~~~~~p~~Is~~WpglP~-- 304 (460)
T 1qhu_A 235 GRGHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGATYVFSG--------SHYWRLDTNRDGWHSWPIAHQWPQGPS-- 304 (460)
T ss_dssp TCCSCC-------CCCTTTTTCTTCCCCEEEECTTCCEEEEET--------TEEEECTTGGGCCCCEEGGGTCTTSCS--
T ss_pred CCCCccccccCCccccccccccCCCCcCEEEecCCCeEEEEeC--------CEEEEEecCCCCcCccchhhhccCCCC--
Confidence 100 011123333 3 4689999977 44566665443221 11 22332
Q ss_pred cCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCccccccc--CCCCCEEEE--ECCEEE
Q 043540 268 KMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAA--GEAPPLLAV--VNNELY 343 (437)
Q Consensus 268 ~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~ly 343 (437)
.--++...++++|++=|.. +++|+..++ .+.++..|..... ...+|.. ....-+++. -++++|
T Consensus 305 ~IDAAf~~~~~~yfFkG~~---------yw~f~~~~g-~~~~~GyPK~I~~---~lGlp~~~~~~~IDAA~~~~~~~kty 371 (460)
T 1qhu_A 305 TVDAAFSWEDKLYLIQDTK---------VYVFLTKGG-YTLVNGYPKRLEK---ELGSPPVISLEAVDAAFVCPGSSRLH 371 (460)
T ss_dssp SCSEEEEETTEEEEEETTE---------EEEEECSBS-CEECTTCCEEHHH---HHCCCSSCCCSCCCEEECCTTCCEEE
T ss_pred CCcEEEEECCeEEEEeCCE---------EEEEeCCCC-ceecCCCCeEHHH---hccCCCccccCcccEEEEeCCCCEEE
Confidence 2334445689999997754 888887542 3333322222110 0001100 000012232 258999
Q ss_pred EEeCCCCeEEEEeCCCC---cEEEccCCCCcccCCCcccEEEEE-----------eCCEEEEEcCCCCCCCCeeEEEeee
Q 043540 344 AADHEKEEVRKFDKGRK---LWRTLGRLPEQASSMNGWGLAFRA-----------CGDQLIVIGGPRDSGGGIVELNGWV 409 (437)
Q Consensus 344 ~~gg~~~~v~~yd~~~~---~W~~v~~lp~~~~~~~~~~~a~~~-----------~~~~l~v~GG~~~~~~~~~~~~~~~ 409 (437)
++- .+..|+||.... .+...+.+|... .+|+.. .++.+|++-|.. .|+
T Consensus 372 fFk--G~~ywryd~~~~Pr~i~~~~~gi~~~v------dAaf~~~~~~~~~~~~~~~~~~yfF~g~~----------y~~ 433 (460)
T 1qhu_A 372 IMA--GRRLWWLDLKSGAQATWTELPWPHEKV------DGALCMEKPLGPNSCSTSGPNLYLIHGPN----------LYC 433 (460)
T ss_dssp EEE--TTEEEEEEGGGGGGCCCEEECCSCSCC------SEEEEESSCSSSCCSCSSSCEEEEEETTE----------EEE
T ss_pred EEE--CCEEEEEECCCCccchhhhCCCCCCCc------CEEEecccccCcccccccCCeEEEEECCE----------EEE
Confidence 994 467999998642 222222223222 355542 457899998754 678
Q ss_pred cCC
Q 043540 410 PDE 412 (437)
Q Consensus 410 ~d~ 412 (437)
||.
T Consensus 434 ~~~ 436 (460)
T 1qhu_A 434 YRH 436 (460)
T ss_dssp ESS
T ss_pred EcC
Confidence 875
No 208
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=93.51 E-value=1.3 Score=41.46 Aligned_cols=150 Identities=7% Similarity=0.046 Sum_probs=75.0
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEE----CCEEEEEeccCCCCCCCceEEEEECCCCcEEe
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL----GEIAILAGGCDPRGKLLKSAELYNSITGTWMP 259 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 259 (437)
++.+++.|+. ...+.+||..+++-...-..+.+. ...... ++.++++|+.+ ..+.+||..+.+-..
T Consensus 111 ~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------~~v~~~d~~~~~~~~ 180 (408)
T 4a11_B 111 DTGMFTSSSF--DKTLKVWDTNTLQTADVFNFEETV--YSHHMSPVSTKHCLVAVGTRG------PKVQLCDLKSGSCSH 180 (408)
T ss_dssp CTTCEEEEET--TSEEEEEETTTTEEEEEEECSSCE--EEEEECSSCSSCCEEEEEESS------SSEEEEESSSSCCCE
T ss_pred CCcEEEEEeC--CCeEEEeeCCCCccceeccCCCce--eeeEeecCCCCCcEEEEEcCC------CeEEEEeCCCcceee
Confidence 4445555542 346888998877654332222211 111111 34466676643 467889987764211
Q ss_pred cCCCCcCCcCeeEEEE--CCE-EEEEecccCCCCccCCeEEEEECCCCc--eEecCCC--------CCcccCCCCccccc
Q 043540 260 ISSMHKARKMCSGVFM--DGK-FYVIGGIGEGSSAMLTDVEMYDLETGK--WTQITDM--------FPARIGSDGVSVIS 326 (437)
Q Consensus 260 ~~~~~~~r~~~~~~~~--~g~-lyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~~~~~--------~~~~~~~~~~~~~~ 326 (437)
.+.........+.+ +++ +++.|+.+ ..+..||+.+.. ...+... ......+.
T Consensus 181 --~~~~~~~~v~~~~~~~~~~~ll~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 245 (408)
T 4a11_B 181 --ILQGHRQEILAVSWSPRYDYILATASAD-------SRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHN------ 245 (408)
T ss_dssp --EECCCCSCEEEEEECSSCTTEEEEEETT-------SCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCS------
T ss_pred --eecCCCCcEEEEEECCCCCcEEEEEcCC-------CcEEEEECCCCCcccccccccccccceeecccccccc------
Confidence 11212222223333 344 67777665 248889987653 2222110 00001110
Q ss_pred ccCCCCCEEEEE--CCEEEEEeCCCCeEEEEeCCCCcE
Q 043540 327 AAGEAPPLLAVV--NNELYAADHEKEEVRKFDKGRKLW 362 (437)
Q Consensus 327 ~~~~~~~~~~~~--~~~ly~~gg~~~~v~~yd~~~~~W 362 (437)
..-..+.+ +++.++.++..+.+.+||..+.+-
T Consensus 246 ----~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 279 (408)
T 4a11_B 246 ----GKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN 279 (408)
T ss_dssp ----SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCB
T ss_pred ----CceeEEEEcCCCCEEEEecCCCeEEEEECCCCcc
Confidence 00112222 566777777778899999987653
No 209
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=93.48 E-value=5 Score=37.57 Aligned_cols=182 Identities=12% Similarity=0.012 Sum_probs=102.1
Q ss_pred cEEEEEe-cCceEEEeccCCCCeeeCC--CCCCccccccCCceeEE-eCCEEEEEcCccCCceEEEEECCCCceecCC--
Q 043540 140 HWVYFSC-KLKEWEAFDPIHHRWMHLP--PMNASDCFMCADKESLA-VGTELLVFGKEVHGNAIYRYNLLTNTWSTGM-- 213 (437)
Q Consensus 140 ~~l~~~~-~~~~~~~yDp~~~~W~~l~--~~p~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~-- 213 (437)
..+|+.. ....+.++++....-..+. .+..|.. ..+. .++.||+.-. ..+.++++++....-+.+.
T Consensus 85 ~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~g------lavd~~~g~ly~~d~--~~~~I~~~~~dG~~~~~l~~~ 156 (349)
T 3v64_C 85 ELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGG------LAVDWVHDKLYWTDS--GTSRIEVANLDGAHRKVLLWQ 156 (349)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCE------EEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECT
T ss_pred cEEEEEeccCCceEEEecCCCCceEEEeCCCCCccE------EEEecCCCeEEEEcC--CCCeEEEEcCCCCceEEEEeC
Confidence 3444432 3456777887766544331 1222211 1122 3788998743 2457889998655433332
Q ss_pred CCCCCccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCe-eEEEE--CCEEEEEecccCC
Q 043540 214 TMNTPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMC-SGVFM--DGKFYVIGGIGEG 288 (437)
Q Consensus 214 ~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~-~~~~~--~g~lyv~GG~~~~ 288 (437)
.+..| .+.++- ++.||+..-.. ...++++++....-+.+..- ..... +.++- +++||+.-..
T Consensus 157 ~l~~P---~~iavdp~~g~ly~td~~~-----~~~I~r~~~dG~~~~~~~~~--~~~~PnGla~d~~~~~lY~aD~~--- 223 (349)
T 3v64_C 157 SLEKP---RAIALHPMEGTIYWTDWGN-----TPRIEASSMDGSGRRIIADT--HLFWPNGLTIDYAGRRMYWVDAK--- 223 (349)
T ss_dssp TCSCE---EEEEEETTTTEEEEEECSS-----SCEEEEEETTSCSCEESCCS--SCSCEEEEEEETTTTEEEEEETT---
T ss_pred CCCCc---ceEEEecCcCeEEEeccCC-----CCEEEEEeCCCCCcEEEEEC--CCCCcceEEEeCCCCEEEEEECC---
Confidence 22222 234443 68999884311 36799999876544444221 11222 33332 6899998432
Q ss_pred CCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCc
Q 043540 289 SSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKL 361 (437)
Q Consensus 289 ~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~ 361 (437)
...|+++|+....-+.+.... . ..|.++++.++.||+.+.....|.++|+.+.+
T Consensus 224 ----~~~I~~~~~dG~~~~~~~~~~--~-------------~~P~giav~~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 224 ----HHVIERANLDGSHRKAVISQG--L-------------PHPFAITVFEDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp ----TTEEEEEETTSCSCEEEECSS--C-------------SSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred ----CCEEEEEeCCCCceEEEEeCC--C-------------CCceEEEEECCEEEEecCCCCeEEEEEccCCC
Confidence 246999998753322221111 0 11245777899999999888999999975554
No 210
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=93.35 E-value=7.6 Score=39.29 Aligned_cols=115 Identities=12% Similarity=0.159 Sum_probs=61.7
Q ss_pred EEEEEecCceEEEeccCCC--CeeeCCCCCCcccccc--CCceeEEeCCEEEEEcCccCCceEEEEECCCCc--eecCCC
Q 043540 141 WVYFSCKLKEWEAFDPIHH--RWMHLPPMNASDCFMC--ADKESLAVGTELLVFGKEVHGNAIYRYNLLTNT--WSTGMT 214 (437)
Q Consensus 141 ~l~~~~~~~~~~~yDp~~~--~W~~l~~~p~~~~~~~--~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~--W~~~~~ 214 (437)
-+|+......+.++|..+. .|+.-...+......| .....+..++.||+.. ....++.+|..|++ |+.-..
T Consensus 70 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t---~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 70 VIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGT---LDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp EEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEE---TTTEEEEEESSSCCEEEEEECS
T ss_pred EEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEe---CCCEEEEEECCCCCEEeeecCC
Confidence 4566555345889998876 4875433222111000 1123356788888753 23578999998875 774321
Q ss_pred CCCCc--cceeeEEECC------EEEEEeccCCCCCCCceEEEEECCCCc--EEe
Q 043540 215 MNTPR--CLFGSASLGE------IAILAGGCDPRGKLLKSAELYNSITGT--WMP 259 (437)
Q Consensus 215 ~~~~r--~~~~~~~~~~------~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~ 259 (437)
-+... ...+-++.++ .||+. ...........+..||.+|++ |+.
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg-~~~~e~~~~g~v~alD~~tG~~~W~~ 200 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHG-SSGDEFGVVGRLFARDPDTGEEIWMR 200 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEEC-CBCGGGCCBCEEEEECTTTCCEEEEE
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEe-ccccccCCCCEEEEEECCCCCEEeec
Confidence 11111 1112234555 66653 211111123678999999887 965
No 211
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=93.33 E-value=4.2 Score=36.29 Aligned_cols=107 Identities=17% Similarity=0.197 Sum_probs=54.5
Q ss_pred CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceE
Q 043540 228 GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWT 307 (437)
Q Consensus 228 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~ 307 (437)
++..++.|+.+ ..+.+||..... ..+..............-+++ ++.|+.+ ..+..||+.+.+-.
T Consensus 154 ~~~~l~~~~~d------~~i~i~d~~~~~-~~~~~~~~~~i~~~~~~~~~~-~~~~~~d-------g~i~i~d~~~~~~~ 218 (313)
T 3odt_A 154 SENKFLTASAD------KTIKLWQNDKVI-KTFSGIHNDVVRHLAVVDDGH-FISCSND-------GLIKLVDMHTGDVL 218 (313)
T ss_dssp TTTEEEEEETT------SCEEEEETTEEE-EEECSSCSSCEEEEEEEETTE-EEEEETT-------SEEEEEETTTCCEE
T ss_pred CCCEEEEEECC------CCEEEEecCceE-EEEeccCcccEEEEEEcCCCe-EEEccCC-------CeEEEEECCchhhh
Confidence 56666776654 457788833221 112111111112222334777 5565554 35889999876432
Q ss_pred ecCCCCCcccCCCCcccccccCCCCCEEEEE-CCEEEEEeCCCCeEEEEeCCCCcEEEc
Q 043540 308 QITDMFPARIGSDGVSVISAAGEAPPLLAVV-NNELYAADHEKEEVRKFDKGRKLWRTL 365 (437)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ly~~gg~~~~v~~yd~~~~~W~~v 365 (437)
..-.... .. ...++.. +++ ++.++..+.|.+||..+.+-...
T Consensus 219 ~~~~~~~--~~-------------i~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~ 261 (313)
T 3odt_A 219 RTYEGHE--SF-------------VYCIKLLPNGD-IVSCGEDRTVRIWSKENGSLKQV 261 (313)
T ss_dssp EEEECCS--SC-------------EEEEEECTTSC-EEEEETTSEEEEECTTTCCEEEE
T ss_pred hhhhcCC--ce-------------EEEEEEecCCC-EEEEecCCEEEEEECCCCceeEE
Confidence 2111000 00 0122332 454 55666778899999988775544
No 212
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=93.31 E-value=1.6 Score=45.09 Aligned_cols=116 Identities=16% Similarity=0.147 Sum_probs=72.2
Q ss_pred eeEEECCEEEEEeccCCCCCCCceEEEEECCCCc--EEecCCCCcC--------CcCeeEEEECCEEEEEecccCCCCcc
Q 043540 223 GSASLGEIAILAGGCDPRGKLLKSAELYNSITGT--WMPISSMHKA--------RKMCSGVFMDGKFYVIGGIGEGSSAM 292 (437)
Q Consensus 223 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~--------r~~~~~~~~~g~lyv~GG~~~~~~~~ 292 (437)
+-++.++.||+.... ..+..+|..|++ |+.-...+.. ....+.++.+++||+....
T Consensus 61 ~P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~d------- 126 (668)
T 1kv9_A 61 TPLFHDGVIYTSMSW-------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLD------- 126 (668)
T ss_dssp CCEEETTEEEEEEGG-------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTT-------
T ss_pred CCEEECCEEEEECCC-------CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCC-------
Confidence 345689999998652 568899998877 9875443211 0122345678999886432
Q ss_pred CCeEEEEECCCCc--eEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCC-----CCeEEEEeCCCCc--EE
Q 043540 293 LTDVEMYDLETGK--WTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHE-----KEEVRKFDKGRKL--WR 363 (437)
Q Consensus 293 ~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~-----~~~v~~yd~~~~~--W~ 363 (437)
..+.++|.++++ |+.-..-+..... .....++.++++|+.... ...|+.||.++.+ |+
T Consensus 127 -g~l~alD~~tG~~~W~~~~~~~~~~~~------------~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 193 (668)
T 1kv9_A 127 -GRLIALDAKTGKAIWSQQTTDPAKPYS------------ITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWR 193 (668)
T ss_dssp -SEEEEEETTTCCEEEEEECSCTTSSCB------------CCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred -CEEEEEECCCCCEeeeeccCCCCCcce------------ecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence 358999998875 8764321111111 001235568888875322 3679999998865 87
Q ss_pred Ec
Q 043540 364 TL 365 (437)
Q Consensus 364 ~v 365 (437)
.-
T Consensus 194 ~~ 195 (668)
T 1kv9_A 194 FY 195 (668)
T ss_dssp EE
T ss_pred ec
Confidence 63
No 213
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=93.20 E-value=4.9 Score=38.09 Aligned_cols=151 Identities=13% Similarity=0.059 Sum_probs=80.3
Q ss_pred eeEEeCCEEEEEcCccCCceEEEEECCCC---------ceecCCCCCCCccceeeEEE--CCEEEEEeccCCCCCCCceE
Q 043540 179 ESLAVGTELLVFGKEVHGNAIYRYNLLTN---------TWSTGMTMNTPRCLFGSASL--GEIAILAGGCDPRGKLLKSA 247 (437)
Q Consensus 179 ~~~~~~~~lyv~GG~~~~~~v~~yd~~t~---------~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 247 (437)
++...++++|+|=| +.+|+++.... .|.. +|. .--++... ++++|++-| +..
T Consensus 185 Av~~~~g~~~fFkg----~~~Wr~~~~~~~~~p~~I~~~wpg---LP~--~iDAa~~~~~~g~~~fFkg--------~~y 247 (365)
T 3ba0_A 185 AVTTVGNKIFFFKD----RFFWLKVSERPKTSVNLISSLWPT---LPS--GIEAAYEIEARNQVFLFKD--------DKY 247 (365)
T ss_dssp CEEEETTEEEEEET----TEEEECCSSCCCCCEEEHHHHCSS---CCS--SCCEEEEEGGGTEEEEEET--------TEE
T ss_pred eEEEcCCeEEEEeC----CEEEEEcCCCccCCccchhhhccC---CCC--CccEEEEecCCCEEEEEeC--------CEE
Confidence 34557999999954 34666654332 2333 331 11123233 789999977 456
Q ss_pred EEEECCCCc--E-EecCC--CCcCC-cCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCC
Q 043540 248 ELYNSITGT--W-MPISS--MHKAR-KMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGS 319 (437)
Q Consensus 248 ~~yd~~t~~--W-~~~~~--~~~~r-~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~ 319 (437)
|+|+..+-. + +.+.. +|..- .--+++.. ++++|++-|.. .++||..+++-.. ..|.....
T Consensus 248 Wr~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~~~~yfFkG~~---------yw~yd~~~~~v~~--gyPk~I~~- 315 (365)
T 3ba0_A 248 WLISNLRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVDNQ---------YWRYDERRQMMDP--GYPKLITK- 315 (365)
T ss_dssp EECSTTSCTTTCSEETTTTTCCTTCCCCCEEEEETTTTEEEEEETTE---------EEEEETTTTEECS--SCCCCHHH-
T ss_pred EEEcCCcccCCCCceeeeccCCCCCCCcCEEEEeCCCCEEEEEECCE---------EEEEeCCcceecC--CCCcchhh-
Confidence 777654211 1 22332 23211 22233344 58999997754 8999987654321 11111100
Q ss_pred CCcccccccCCCCCEEEEE-CCEEEEEeCCCCeEEEEeCCCCcEEE
Q 043540 320 DGVSVISAAGEAPPLLAVV-NNELYAADHEKEEVRKFDKGRKLWRT 364 (437)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~-~~~ly~~gg~~~~v~~yd~~~~~W~~ 364 (437)
.-..+| .-.-+++.. ++++|++- .+..++||..+++-..
T Consensus 316 -~f~g~p---~~iDaA~~~~~g~~YfFk--g~~ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 316 -NFQGIG---PKIDAVFYSKNKYYYFFQ--GSNQFEYDFLLQRITK 355 (365)
T ss_dssp -HSTTCC---SSCSEEEEETTTEEEEEE--TTEEEEEETTTTEEEE
T ss_pred -cCCCCC---CccceeeEecCCcEEEEe--CCEEEEEECCccEEec
Confidence 000000 001244555 89999994 4679999998877554
No 214
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=93.17 E-value=4.3 Score=37.15 Aligned_cols=199 Identities=13% Similarity=0.083 Sum_probs=91.8
Q ss_pred cEEEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeE---EeCCEEEEEcCccCCceEEEEECCCCceecCCCCC
Q 043540 140 HWVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESL---AVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMN 216 (437)
Q Consensus 140 ~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~---~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~ 216 (437)
.+++.......+..||..+.+...+.....+.. .+. .-++.+++.|+. ...+.+||..+++-.. .+.
T Consensus 99 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~------~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~--~~~ 168 (368)
T 3mmy_A 99 SKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVK------TIHWIKAPNYSCVMTGSW--DKTLKFWDTRSSNPMM--VLQ 168 (368)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECSSCEE------EEEEEECSSCEEEEEEET--TSEEEEECSSCSSCSE--EEE
T ss_pred CEEEEEcCCCcEEEEEcCCCCceeeccccCceE------EEEEEeCCCCCEEEEccC--CCcEEEEECCCCcEEE--EEe
Confidence 345555555678888888776554322111110 111 225566666643 3468889987764221 111
Q ss_pred CCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCc--EEecCCCCcCCcCeeEEEECC----EEEEEecccCCCC
Q 043540 217 TPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGT--WMPISSMHKARKMCSGVFMDG----KFYVIGGIGEGSS 290 (437)
Q Consensus 217 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~g----~lyv~GG~~~~~~ 290 (437)
......+.......+++.++ + ..+.+||..... +..+............+..+. ..++.|+.+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~-~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---- 237 (368)
T 3mmy_A 169 LPERCYCADVIYPMAVVATA-E------RGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIE---- 237 (368)
T ss_dssp CSSCEEEEEEETTEEEEEEG-G------GCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETT----
T ss_pred cCCCceEEEecCCeeEEEeC-C------CcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCC----
Confidence 22222334444555554433 2 457788877654 444433222222222333332 225555554
Q ss_pred ccCCeEEEEECCCCce-EecCCCCCcccCCCCcccccccCCCCCEEEEE-CCEEEEEeCCCCeEEEEeCCCCcEE
Q 043540 291 AMLTDVEMYDLETGKW-TQITDMFPARIGSDGVSVISAAGEAPPLLAVV-NNELYAADHEKEEVRKFDKGRKLWR 363 (437)
Q Consensus 291 ~~~~~v~~yd~~~~~W-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ly~~gg~~~~v~~yd~~~~~W~ 363 (437)
..+..||+.+..- ..+..+........ ....+........++.. ++++++.|+..+.|.+||..+.+-.
T Consensus 238 ---g~i~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~ 308 (368)
T 3mmy_A 238 ---GRVAIHYINPPNPAKDNFTFKCHRSNGT-NTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKL 308 (368)
T ss_dssp ---SEEEEEESSCSCHHHHSEEEECSEEC-----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEE
T ss_pred ---CcEEEEecCCCCccccceeeeeeecccc-cccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEE
Confidence 3578888876521 00000000000000 00000000000112222 5667777777788999999876543
No 215
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=93.06 E-value=8.9 Score=39.27 Aligned_cols=149 Identities=13% Similarity=0.009 Sum_probs=79.0
Q ss_pred CceEEEEECCCCceecCCCCCCCccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCC-cEEecCCCCcCCc----
Q 043540 196 GNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITG-TWMPISSMHKARK---- 268 (437)
Q Consensus 196 ~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~~~~~~r~---- 268 (437)
...++++|..+++-..+............+.+ +++.++++..+.. .....+.++|..++ ..+.+........
T Consensus 234 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~-~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~ 312 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRA-QNECKVNAYDAETGRFVRTLFVETDKHYVEPL 312 (706)
T ss_dssp EEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTT-SCEEEEEEEETTTCCEEEEEEEEECSSCCCCC
T ss_pred eeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCC-CCeeEEEEEECCCCceeeEEEEccCCCeECcc
Confidence 35799999988876555422111122222322 5554444343322 12468899999998 6665532111111
Q ss_pred CeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE--C-CEEE
Q 043540 269 MCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV--N-NELY 343 (437)
Q Consensus 269 ~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~ly 343 (437)
......- ||++++.+..+ ....++.+|...+....+..-.... ..++.+ + +.||
T Consensus 313 ~~~~~sp~~dg~~l~~~~~~-----g~~~l~~~~~~~~~~~~l~~~~~~v----------------~~~~~~spdg~~l~ 371 (706)
T 2z3z_A 313 HPLTFLPGSNNQFIWQSRRD-----GWNHLYLYDTTGRLIRQVTKGEWEV----------------TNFAGFDPKGTRLY 371 (706)
T ss_dssp SCCEECTTCSSEEEEEECTT-----SSCEEEEEETTSCEEEECCCSSSCE----------------EEEEEECTTSSEEE
T ss_pred CCceeecCCCCEEEEEEccC-----CccEEEEEECCCCEEEecCCCCeEE----------------EeeeEEcCCCCEEE
Confidence 1112233 78866665433 1346888887777666664211110 111222 3 4566
Q ss_pred EEeCCC----CeEEEEeCCCCcEEEcc
Q 043540 344 AADHEK----EEVRKFDKGRKLWRTLG 366 (437)
Q Consensus 344 ~~gg~~----~~v~~yd~~~~~W~~v~ 366 (437)
+.+... ..|+.+|..+.+.+.+.
T Consensus 372 ~~~~~~~~~~~~l~~~d~~~~~~~~l~ 398 (706)
T 2z3z_A 372 FESTEASPLERHFYCIDIKGGKTKDLT 398 (706)
T ss_dssp EEESSSCTTCBEEEEEETTCCCCEESC
T ss_pred EEecCCCCceEEEEEEEcCCCCceecc
Confidence 665443 37899999887766664
No 216
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=93.05 E-value=2.8 Score=40.76 Aligned_cols=199 Identities=14% Similarity=0.107 Sum_probs=95.9
Q ss_pred EEEEEecCceEEEeccCCCCeeeCCC-CCCccccccCCceeEEeCCEEEEEcCc--cCCceEEEEECCCCcee---cCCC
Q 043540 141 WVYFSCKLKEWEAFDPIHHRWMHLPP-MNASDCFMCADKESLAVGTELLVFGKE--VHGNAIYRYNLLTNTWS---TGMT 214 (437)
Q Consensus 141 ~l~~~~~~~~~~~yDp~~~~W~~l~~-~p~~~~~~~~~~~~~~~~~~lyv~GG~--~~~~~v~~yd~~t~~W~---~~~~ 214 (437)
.||+......+.++|+.+++...+.. +..|.. ..+..++.||+.... .....+..++.. ..+. .++.
T Consensus 154 ~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~g------iavd~dG~lyVad~~~~~~~~gv~~~~~~-~~~~~~~~~~~ 226 (433)
T 4hw6_A 154 DLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCAD------VNFTLNGDMVVVDDQSSDTNTGIYLFTRA-SGFTERLSLCN 226 (433)
T ss_dssp EEEEECBTSCEEEEETTTTEEEEECCCCSCEEE------EEECTTCCEEEEECCSCTTSEEEEEECGG-GTTCCEEEEEE
T ss_pred EEEEEeCCCCEEEEECCCCEEEEeecCCCCccE------EEECCCCCEEEEcCCCCcccceEEEEECC-CCeeccccccc
Confidence 44554333668889998877766543 111111 112334558887421 112345556553 2232 2222
Q ss_pred CCCCccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcE-EecCCCCcCCcCeeEEEE-CC-EEEEEecccCCC
Q 043540 215 MNTPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTW-MPISSMHKARKMCSGVFM-DG-KFYVIGGIGEGS 289 (437)
Q Consensus 215 ~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W-~~~~~~~~~r~~~~~~~~-~g-~lyv~GG~~~~~ 289 (437)
+..| .++++- ++.||+.-.. ...+.+||+.+++- +.+............++- +| .||+.--.
T Consensus 227 ~~~P---~giavd~~~G~lyv~d~~------~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~---- 293 (433)
T 4hw6_A 227 ARGA---KTCAVHPQNGKIYYTRYH------HAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNG---- 293 (433)
T ss_dssp CSSB---CCCEECTTTCCEEECBTT------CSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETT----
T ss_pred cCCC---CEEEEeCCCCeEEEEECC------CCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCC----
Confidence 2211 233333 5788887421 25799999987765 333211111112223332 45 59988432
Q ss_pred CccCCeEEEEECC--CCceE---ecC-CCC-CcccCCCCcccccccCCCCCEEEE----------ECCEEEEEeCCCCeE
Q 043540 290 SAMLTDVEMYDLE--TGKWT---QIT-DMF-PARIGSDGVSVISAAGEAPPLLAV----------VNNELYAADHEKEEV 352 (437)
Q Consensus 290 ~~~~~~v~~yd~~--~~~W~---~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ly~~gg~~~~v 352 (437)
.+.+.++|+. ++... .+. ... ..... + .........|..+++ -+|.||+.+.....|
T Consensus 294 ---~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~d--g-~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I 367 (433)
T 4hw6_A 294 ---KHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVD--G-MGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTV 367 (433)
T ss_dssp ---TTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBC--E-EGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEE
T ss_pred ---CCEEEEEeCCCCCcccCcEEEEEecCCCCccCC--C-cccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEE
Confidence 2467886654 33321 111 100 00000 0 000000012234555 357899999888899
Q ss_pred EEEeCCCCcEEEcc
Q 043540 353 RKFDKGRKLWRTLG 366 (437)
Q Consensus 353 ~~yd~~~~~W~~v~ 366 (437)
.++++ +.....+.
T Consensus 368 ~~~~~-~G~v~t~~ 380 (433)
T 4hw6_A 368 RVLTP-EGRVTTYA 380 (433)
T ss_dssp EEECT-TSEEEEEE
T ss_pred EEECC-CCCEEEEE
Confidence 99997 44555554
No 217
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=93.04 E-value=0.94 Score=50.26 Aligned_cols=186 Identities=12% Similarity=0.134 Sum_probs=92.1
Q ss_pred EEEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCcc
Q 043540 141 WVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRC 220 (437)
Q Consensus 141 ~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~ 220 (437)
++.+......+..||..+.+......-.... .......-++..++.|+. ...+.+||..++......... ..
T Consensus 975 ~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~----v~~l~~s~dg~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~--~~ 1046 (1249)
T 3sfz_A 975 YVAFGDEDGAIKIIELPNNRVFSSGVGHKKA----VRHIQFTADGKTLISSSE--DSVIQVWNWQTGDYVFLQAHQ--ET 1046 (1249)
T ss_dssp EEEEEETTSCCEEEETTTTSCEEECCCCSSC----CCCEEECSSSSCEEEECS--SSBEEEEETTTTEEECCBCCS--SC
T ss_pred EEEEEcCCCCEEEEEcCCCceeeecccCCCc----eEEEEECCCCCEEEEEcC--CCEEEEEECCCCceEEEecCC--Cc
Confidence 3344444456677777665533211111000 101112234555555543 346889999888776543221 11
Q ss_pred ceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEE
Q 043540 221 LFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYD 300 (437)
Q Consensus 221 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd 300 (437)
....+...+..++.|+.+ ..+.+||..+++-...-..........+..-++++++.|+.+ ..+..||
T Consensus 1047 v~~~~~~~~~~l~~~~~d------g~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d-------~~v~iwd 1113 (1249)
T 3sfz_A 1047 VKDFRLLQDSRLLSWSFD------GTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSAD-------KTAKIWS 1113 (1249)
T ss_dssp EEEEEECSSSEEEEEESS------SEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCS-------SCCCEEC
T ss_pred EEEEEEcCCCcEEEEECC------CcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCC-------CcEEEEE
Confidence 222333334445566543 568899988775321111111111222223367777777764 2366788
Q ss_pred CCCCceEecCCCCCcccCCCCcccccccCCCCCEEE-EECCEEEEEeCCCCeEEEEeCCCCcE
Q 043540 301 LETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLA-VVNNELYAADHEKEEVRKFDKGRKLW 362 (437)
Q Consensus 301 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~gg~~~~v~~yd~~~~~W 362 (437)
..+.+ .+..+... .. .+ ..++ .-++++++.|+..+.|.+||..+.+-
T Consensus 1114 ~~~~~--~~~~l~~h-~~---~v---------~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~ 1161 (1249)
T 3sfz_A 1114 FDLLS--PLHELKGH-NG---CV---------RCSAFSLDGILLATGDDNGEIRIWNVSDGQL 1161 (1249)
T ss_dssp SSSSS--CSBCCCCC-SS---CE---------EEEEECSSSSEEEEEETTSCCCEEESSSSCC
T ss_pred CCCcc--eeeeeccC-CC---cE---------EEEEECCCCCEEEEEeCCCEEEEEECCCCce
Confidence 76643 12111111 11 00 1122 23677888887777899999887653
No 218
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=92.88 E-value=3.9 Score=40.76 Aligned_cols=108 Identities=18% Similarity=0.209 Sum_probs=60.6
Q ss_pred EEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCc---CeeEEEE--C-CEEEEEecccCCCCccCCeEEEEECCCC
Q 043540 231 AILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARK---MCSGVFM--D-GKFYVIGGIGEGSSAMLTDVEMYDLETG 304 (437)
Q Consensus 231 iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~---~~~~~~~--~-g~lyv~GG~~~~~~~~~~~v~~yd~~~~ 304 (437)
+++.|+.+ ..+.+||..+.+-.. .+..... ....+.+ + +++++.|+.+ ..+..||+.++
T Consensus 175 ~l~~~~~d------~~v~vwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g~i~vwd~~~~ 239 (615)
T 1pgu_A 175 RSMTVGDD------GSVVFYQGPPFKFSA--SDRTHHKQGSFVRDVEFSPDSGEFVITVGSD-------RKISCFDGKSG 239 (615)
T ss_dssp EEEEEETT------TEEEEEETTTBEEEE--EECSSSCTTCCEEEEEECSTTCCEEEEEETT-------CCEEEEETTTC
T ss_pred EEEEEeCC------CcEEEEeCCCcceee--eecccCCCCceEEEEEECCCCCCEEEEEeCC-------CeEEEEECCCC
Confidence 66776643 578889977654322 2222222 2333333 5 7777777764 25889999877
Q ss_pred ceEecC-CCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCcEEEc
Q 043540 305 KWTQIT-DMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKLWRTL 365 (437)
Q Consensus 305 ~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~W~~v 365 (437)
+....- ........ .+ ..++..++.+++.++..+.|.+||..+.+-...
T Consensus 240 ~~~~~~~~~~~~~~~---~v---------~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~ 289 (615)
T 1pgu_A 240 EFLKYIEDDQEPVQG---GI---------FALSWLDSQKFATVGADATIRVWDVTTSKCVQK 289 (615)
T ss_dssp CEEEECCBTTBCCCS---CE---------EEEEESSSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred CEeEEecccccccCC---ce---------EEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEE
Confidence 643321 10001111 00 112222777788877778899999988765443
No 219
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=92.84 E-value=10 Score=39.96 Aligned_cols=146 Identities=11% Similarity=0.062 Sum_probs=87.5
Q ss_pred eCCEEEEEcCccCCceEEEEECCCCceecCC--CCCCCccceeeEE--ECCEEEEEeccCCCCCCCceEEEEECCCCcEE
Q 043540 183 VGTELLVFGKEVHGNAIYRYNLLTNTWSTGM--TMNTPRCLFGSAS--LGEIAILAGGCDPRGKLLKSAELYNSITGTWM 258 (437)
Q Consensus 183 ~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~--~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~ 258 (437)
+++.||+.-. ..+.|+++++....-+.+. .+..|+ ++++ .++.||+.--. ....|+++++....-+
T Consensus 481 ~~~~LY~tD~--~~~~I~v~~ldG~~~~~l~~~~l~~P~---gIaVDp~~g~LYwtD~g-----~~~~I~~~~~dG~~~~ 550 (791)
T 3m0c_C 481 IHSNIYWTDS--VLGTVSVADTKGVKRKTLFRENGSKPR---AIVVDPVHGFMYWTDWG-----TPAKIKKGGLNGVDIY 550 (791)
T ss_dssp TTTEEEEEET--TTTEEEEEETTSSSEEEEEECTTCCEE---EEEEETTTTEEEEEECS-----SSCEEEEEETTSCCEE
T ss_pred cCCcEEEEec--CCCeEEEEeCCCCeEEEEEeCCCCCcc---eEEEecCCCCEEEecCC-----CCCeEEEEecCCCceE
Confidence 3678998742 3457899998765544442 233322 3444 25899998411 1257899998765544
Q ss_pred ecCCCCcCCcCeeEEEE---CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEE
Q 043540 259 PISSMHKARKMCSGVFM---DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLL 335 (437)
Q Consensus 259 ~~~~~~~~r~~~~~~~~---~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (437)
.+..- ......++.+ +++||+.-.. ...|+++|+....=..+..-...... +.++
T Consensus 551 ~lv~~--~l~~P~GLavD~~~~~LYwaD~~-------~~~I~~~d~dG~~~~~v~~~~~~l~~-------------P~gl 608 (791)
T 3m0c_C 551 SLVTE--NIQWPNGITLDLLSGRLYWVDSK-------LHSISSIDVNGGNRKTILEDEKRLAH-------------PFSL 608 (791)
T ss_dssp EEECS--SCSCEEEEEEETTTTEEEEEETT-------TTEEEEEETTSCSCEEEEECTTTTSS-------------EEEE
T ss_pred EEEeC--CCCCceEEEEecCCCeEEEEeCC-------CCcEEEEecCCCceEEEecCCCccCC-------------CCEE
Confidence 44221 1123333333 6899998432 35699999875443333211111111 1357
Q ss_pred EEECCEEEEEeCCCCeEEEEeCCCC
Q 043540 336 AVVNNELYAADHEKEEVRKFDKGRK 360 (437)
Q Consensus 336 ~~~~~~ly~~gg~~~~v~~yd~~~~ 360 (437)
++.+++||+.+.....|+++|..++
T Consensus 609 av~~~~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 609 AVFEDKVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp EEETTEEEEEETTTTEEEEEETTTC
T ss_pred EEeCCEEEEEECCCCEEEEEeCCCC
Confidence 7789999999988899999997654
No 220
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=92.77 E-value=3.4 Score=37.88 Aligned_cols=149 Identities=13% Similarity=0.093 Sum_probs=80.6
Q ss_pred CEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCCce
Q 043540 229 EIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGKW 306 (437)
Q Consensus 229 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W 306 (437)
+..++.|+.+ ..+.+||..++.......+.........+.+ ++++++.|+.+ ..+..||+.+++-
T Consensus 54 g~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-------g~v~iwd~~~~~~ 120 (368)
T 3mmy_A 54 GNFLIAGSWA------NDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD-------KTAKMWDLSSNQA 120 (368)
T ss_dssp SEEEEEEETT------SEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT-------SEEEEEETTTTEE
T ss_pred ceEEEEECCC------CcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC-------CcEEEEEcCCCCc
Confidence 3777777754 5678888887433322222222222233333 67777777654 3688999998876
Q ss_pred EecCCCCCcccCCCCcccccccCCCCCEEEE---ECCEEEEEeCCCCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEE
Q 043540 307 TQITDMFPARIGSDGVSVISAAGEAPPLLAV---VNNELYAADHEKEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFR 383 (437)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~ 383 (437)
..+....... ..+.. -++.+++.++..+.|.+||..+.+-...-..+.. ..++.
T Consensus 121 ~~~~~~~~~v----------------~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-------~~~~~ 177 (368)
T 3mmy_A 121 IQIAQHDAPV----------------KTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPER-------CYCAD 177 (368)
T ss_dssp EEEEECSSCE----------------EEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSC-------EEEEE
T ss_pred eeeccccCce----------------EEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCC-------ceEEE
Confidence 5542211111 12222 3677778887788899999987652222122211 23344
Q ss_pred EeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCceec
Q 043540 384 ACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKLL 420 (437)
Q Consensus 384 ~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~l 420 (437)
...+.+++.++.. .+.+|..+.....+..+
T Consensus 178 ~~~~~~~~~~~~~-------~i~~~~~~~~~~~~~~~ 207 (368)
T 3mmy_A 178 VIYPMAVVATAER-------GLIVYQLENQPSEFRRI 207 (368)
T ss_dssp EETTEEEEEEGGG-------CEEEEECSSSCEEEEEC
T ss_pred ecCCeeEEEeCCC-------cEEEEEeccccchhhhc
Confidence 4556555544321 35667666555555544
No 221
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=92.49 E-value=3.3 Score=38.66 Aligned_cols=164 Identities=13% Similarity=-0.027 Sum_probs=82.7
Q ss_pred EeCCEEEEEcCc-cCCceEEEEECCCCceecCCCCCCCccceeeEEECC-EEEEEeccCCCCCCCceEEEEECCCCcEEe
Q 043540 182 AVGTELLVFGKE-VHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGE-IAILAGGCDPRGKLLKSAELYNSITGTWMP 259 (437)
Q Consensus 182 ~~~~~lyv~GG~-~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 259 (437)
+-+++.+++... .....++++|+.+++-+.+...+..........-++ .|+.... + ..++++|+.+++-+.
T Consensus 44 SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~-~------~~l~~~d~~~g~~~~ 116 (388)
T 3pe7_A 44 TRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKD-G------RNLMRVDLATLEENV 116 (388)
T ss_dssp CTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEET-T------TEEEEEETTTCCEEE
T ss_pred CCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeC-C------CeEEEEECCCCccee
Confidence 334544444332 334579999999988877764432222112223344 4444432 1 478899999887665
Q ss_pred cCCCCcCCcCeeEEE--ECCEEEEEecccCC---------------CCccCCeEEEEECCCCceEecCCCCCcccCCCCc
Q 043540 260 ISSMHKARKMCSGVF--MDGKFYVIGGIGEG---------------SSAMLTDVEMYDLETGKWTQITDMFPARIGSDGV 322 (437)
Q Consensus 260 ~~~~~~~r~~~~~~~--~~g~lyv~GG~~~~---------------~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~ 322 (437)
+...+.......... -++++++.-..... .......++.+|+.+++-+.+..-... ..
T Consensus 117 ~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~-~~---- 191 (388)
T 3pe7_A 117 VYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQW-LG---- 191 (388)
T ss_dssp EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSC-EE----
T ss_pred eeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCcc-cc----
Confidence 544443222112221 24544432110000 011235689999998876655321111 11
Q ss_pred ccccccCCCCCEEEEE-CCEEEEE-e-CC----CCeEEEEeCCCCcEEEccC
Q 043540 323 SVISAAGEAPPLLAVV-NNELYAA-D-HE----KEEVRKFDKGRKLWRTLGR 367 (437)
Q Consensus 323 ~~~~~~~~~~~~~~~~-~~~ly~~-g-g~----~~~v~~yd~~~~~W~~v~~ 367 (437)
.....- +|+.+++ . +. ...|+.+|..+.....+..
T Consensus 192 ----------~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 233 (388)
T 3pe7_A 192 ----------HPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKT 233 (388)
T ss_dssp ----------EEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCC
T ss_pred ----------ccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeee
Confidence 112222 4443333 2 11 3479999998877776654
No 222
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=92.46 E-value=0.48 Score=52.62 Aligned_cols=187 Identities=10% Similarity=0.096 Sum_probs=88.1
Q ss_pred EEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccc
Q 043540 142 VYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCL 221 (437)
Q Consensus 142 l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~ 221 (437)
+........+..||..+++...+......... ....-++.++..+ ....+.+||..+++-...-........
T Consensus 1018 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~-----~~~~~~~~l~~~~---~dg~v~vwd~~~~~~~~~~~~~~~~v~ 1089 (1249)
T 3sfz_A 1018 LISSSEDSVIQVWNWQTGDYVFLQAHQETVKD-----FRLLQDSRLLSWS---FDGTVKVWNVITGRIERDFTCHQGTVL 1089 (1249)
T ss_dssp EEEECSSSBEEEEETTTTEEECCBCCSSCEEE-----EEECSSSEEEEEE---SSSEEEEEETTTTCCCEEEECCSSCCC
T ss_pred EEEEcCCCEEEEEECCCCceEEEecCCCcEEE-----EEEcCCCcEEEEE---CCCcEEEEECCCCceeEEEcccCCcEE
Confidence 33333445677888877766543221111100 0112244444333 235688899887653221111111111
Q ss_pred eeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEE
Q 043540 222 FGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMY 299 (437)
Q Consensus 222 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~y 299 (437)
..+..-++..++.|+.+ ..+.+||..+.+ .+..+.........+.+ +|++.+.|+.+ ..+..|
T Consensus 1090 ~~~~s~d~~~l~s~s~d------~~v~iwd~~~~~--~~~~l~~h~~~v~~~~~s~dg~~lat~~~d-------g~i~vw 1154 (1249)
T 3sfz_A 1090 SCAISSDATKFSSTSAD------KTAKIWSFDLLS--PLHELKGHNGCVRCSAFSLDGILLATGDDN-------GEIRIW 1154 (1249)
T ss_dssp CEEECSSSSSCEEECCS------SCCCEECSSSSS--CSBCCCCCSSCEEEEEECSSSSEEEEEETT-------SCCCEE
T ss_pred EEEECCCCCEEEEEcCC------CcEEEEECCCcc--eeeeeccCCCcEEEEEECCCCCEEEEEeCC-------CEEEEE
Confidence 12222356666776654 345678876654 22223222222233333 78888887765 237788
Q ss_pred ECCCCceEec-CCCCC--cccCCCCcccccccCCCCCEEEE-ECCEEEEEeCCCCeEEEEeCCCCcE
Q 043540 300 DLETGKWTQI-TDMFP--ARIGSDGVSVISAAGEAPPLLAV-VNNELYAADHEKEEVRKFDKGRKLW 362 (437)
Q Consensus 300 d~~~~~W~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~~~v~~yd~~~~~W 362 (437)
|+.+++-... .+... ....|. .....++. -++++++.++ +.+.+||..+++-
T Consensus 1155 d~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1155 NVSDGQLLHSCAPISVEEGTATHG---------GWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp ESSSSCCCCCCCCCC-------CC---------SCCCEEEECTTSSCEEEES--SSEEEBCSSSCBC
T ss_pred ECCCCceEEEeccccccccccccC---------ceEEEEEECCCCCEEEECC--CeEEEEECCCCce
Confidence 8887653221 11110 001110 00112222 2566555554 6799999887654
No 223
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=92.43 E-value=5.2 Score=36.85 Aligned_cols=151 Identities=11% Similarity=0.072 Sum_probs=75.5
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEE-ECCEEEEEeccCCCCCCCceEEEEECCCCcEE--ec
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSAS-LGEIAILAGGCDPRGKLLKSAELYNSITGTWM--PI 260 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~--~~ 260 (437)
.+.+++.|+. ...+.+||..+++-.............+++. -++.+++.|+.+ ..+.+||..+++-. .+
T Consensus 138 ~~~~l~s~s~--dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~d------g~i~iwd~~~~~~~~~~~ 209 (343)
T 3lrv_A 138 NTEYFIWADN--RGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPD------GILDVYNLSSPDQASSRF 209 (343)
T ss_dssp -CCEEEEEET--TCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTT------SCEEEEESSCTTSCCEEC
T ss_pred CCCEEEEEeC--CCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCC------CEEEEEECCCCCCCccEE
Confidence 4455565543 3468889988776543322222211222222 256777777754 56889999887532 22
Q ss_pred CCCCcCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCCceE-ecCCCCCcccCCCCcccccccCCCCCEEEE
Q 043540 261 SSMHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWT-QITDMFPARIGSDGVSVISAAGEAPPLLAV 337 (437)
Q Consensus 261 ~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (437)
.. . .......+.+ ++++.+.|+ . +.+..||+.+.+-. .+..+...... .....+.
T Consensus 210 ~~-~-h~~~v~~l~fs~~g~~l~s~~-~-------~~v~iwd~~~~~~~~~~~~~~~~~~~------------~~~~~~~ 267 (343)
T 3lrv_A 210 PV-D-EEAKIKEVKFADNGYWMVVEC-D-------QTVVCFDLRKDVGTLAYPTYTIPEFK------------TGTVTYD 267 (343)
T ss_dssp CC-C-TTSCEEEEEECTTSSEEEEEE-S-------SBEEEEETTSSTTCBSSCCCBC-----------------CCEEEE
T ss_pred ec-c-CCCCEEEEEEeCCCCEEEEEe-C-------CeEEEEEcCCCCcceeeccccccccc------------ccceEEE
Confidence 11 0 1122233333 566666666 3 15889998875321 11111100000 0011122
Q ss_pred E--CCEEEEEeCC-CCeEEEEeC--CCCcEEE
Q 043540 338 V--NNELYAADHE-KEEVRKFDK--GRKLWRT 364 (437)
Q Consensus 338 ~--~~~ly~~gg~-~~~v~~yd~--~~~~W~~ 364 (437)
+ +++.++.++. .+.+.+|+. ..+.|..
T Consensus 268 ~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~ 299 (343)
T 3lrv_A 268 IDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK 299 (343)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTTCSEEE
T ss_pred ECCCCCEEEEecCCCCcEEEEEEcccccceEe
Confidence 2 5666666444 566766665 5677987
No 224
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=92.42 E-value=7.5 Score=36.82 Aligned_cols=236 Identities=11% Similarity=0.064 Sum_probs=119.2
Q ss_pred eEEEeccCCCCeeeCCCC---CCccc-----cccCCceeEEe----CCEEEEEcCccCCceEEEEECCCCceecCCCC--
Q 043540 150 EWEAFDPIHHRWMHLPPM---NASDC-----FMCADKESLAV----GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTM-- 215 (437)
Q Consensus 150 ~~~~yDp~~~~W~~l~~~---p~~~~-----~~~~~~~~~~~----~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~-- 215 (437)
-++..+....+|..+... +.... ....-..++.. .+.||+.+ ....+++.+-...+|+.+...
T Consensus 82 gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~---~~ggl~~S~DgG~tW~~~~~~~~ 158 (394)
T 3b7f_A 82 TVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGT---SPQGLFRSTDHGASWEPVAGFND 158 (394)
T ss_dssp EEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEE---ETTEEEEESSTTSBCEECHHHHT
T ss_pred cEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEe---cCCcEEEEcCCCCCeEECcCccC
Confidence 356667777899887532 11100 00000011221 56777754 124588888888899987431
Q ss_pred -CC--------------CccceeeEEE---CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCC------CcC-----
Q 043540 216 -NT--------------PRCLFGSASL---GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSM------HKA----- 266 (437)
Q Consensus 216 -~~--------------~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~------~~~----- 266 (437)
|. ....+.+++- .+.||+.... ..+++.+-...+|+.+..- |..
T Consensus 159 ~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~-------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g 231 (394)
T 3b7f_A 159 HPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSS-------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFG 231 (394)
T ss_dssp CTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEET-------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSC
T ss_pred CccccccccccccCCCCCCceeEEEECCCCCCEEEEEECC-------CCEEEECCCCCCceECCCCccccccCCCccccC
Confidence 21 1112233332 2567776432 2466666667889987531 211
Q ss_pred CcCeeEEEE-C--CEEEEEecccCCCCccCCeEEEEECCCCceEecCC-CCCcccCCCCcccccccCCCCCEEEE---EC
Q 043540 267 RKMCSGVFM-D--GKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITD-MFPARIGSDGVSVISAAGEAPPLLAV---VN 339 (437)
Q Consensus 267 r~~~~~~~~-~--g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 339 (437)
...+..++. + +.||+.... .+++++-...+|+.+.. ++..-.. ....+++ -.
T Consensus 232 ~~~~~i~~~~~~~~~l~vg~~~---------gl~~s~D~G~tW~~~~~~l~~~~~~------------~~~~i~~~p~~~ 290 (394)
T 3b7f_A 232 HDPHCVVQHPAAPDILYQQNHC---------GIYRMDRREGVWKRIGDAMPREVGD------------IGFPIVVHQRDP 290 (394)
T ss_dssp BCEEEEEECSSSTTEEEEEETT---------EEEEEETTTTEEECGGGGSCTTTCS------------CEEEEEECSSCT
T ss_pred cceeEEEECCCCCCEEEEEcCC---------eEEEeCCCCCcceECCCCCCCCCcc------------ceEEEEECCCCC
Confidence 112233332 1 677774322 37888888899999863 4331101 0012333 24
Q ss_pred CEEEEEeC------------CCCeEEEEeCCCCcEEEcc-CCCCcccCCC--cccEEEEEeC-CEEEEEcCCCCCCCCee
Q 043540 340 NELYAADH------------EKEEVRKFDKGRKLWRTLG-RLPEQASSMN--GWGLAFRACG-DQLIVIGGPRDSGGGIV 403 (437)
Q Consensus 340 ~~ly~~gg------------~~~~v~~yd~~~~~W~~v~-~lp~~~~~~~--~~~~a~~~~~-~~l~v~GG~~~~~~~~~ 403 (437)
+.||+... ....+++-.-.-.+|+.+. .+|....... ...+++...+ +.||+. +..
T Consensus 291 ~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g-~~~------- 362 (394)
T 3b7f_A 291 RTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFG-TTG------- 362 (394)
T ss_dssp TCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEE-CTT-------
T ss_pred CEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEE-eCC-------
Confidence 67888631 1123444433347899985 3554321000 0122221123 456654 321
Q ss_pred EEEeeecCCCCCCceecC-ccCC
Q 043540 404 ELNGWVPDEGPPHWKLLA-RQPM 425 (437)
Q Consensus 404 ~~~~~~~d~~~~~W~~l~-~~p~ 425 (437)
-.+|+-+....+|+.+. .+|.
T Consensus 363 -g~l~~S~D~G~tW~~~~~~lp~ 384 (394)
T 3b7f_A 363 -GEIWASADEGEHWQCIASHLPH 384 (394)
T ss_dssp -SCEEEESSTTSBCEEEECSCSC
T ss_pred -CeEEEECCCCCCceEcccCCCC
Confidence 12666666778999985 4564
No 225
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=92.40 E-value=4.4 Score=40.20 Aligned_cols=141 Identities=11% Similarity=0.128 Sum_probs=70.6
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecC
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPIS 261 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 261 (437)
++..++.|+. ...+.+||.....-..+... ......+.+ +++.++.|+.+ ..+.+||.....-..+.
T Consensus 355 ~g~~l~~~~~--dg~v~~~~~~~~~~~~~~~~---~~~v~~~~~s~dg~~l~~~~~d------~~v~~~~~~~~~~~~~~ 423 (577)
T 2ymu_A 355 DGQTIASASD--DKTVKLWNRNGQLLQTLTGH---SSSVRGVAFSPDGQTIASASDD------KTVKLWNRNGQLLQTLT 423 (577)
T ss_dssp TSSEEEEEET--TSEEEEEETTCCEEEEEECC---SSCEEEEEECTTSSCEEEEETT------SEEEEECTTCCEEEEEE
T ss_pred CCCEEEEEeC--CCEEEEEcCCCCEEEEecCC---CCCeEEEEECCCCCEEEEEeCC------CEEEEEeCCCCEEEEec
Confidence 4555555543 23577788544333332211 111222222 45666666643 46778885433222222
Q ss_pred CCCcCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEE-E
Q 043540 262 SMHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV-V 338 (437)
Q Consensus 262 ~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 338 (437)
. .......+.+ ++++.+.++.+ ..+..||.....-..+....... ..++. -
T Consensus 424 ~---~~~~v~~~~~s~d~~~l~~~~~d-------~~v~~w~~~~~~~~~~~~~~~~v----------------~~~~~sp 477 (577)
T 2ymu_A 424 G---HSSSVWGVAFSPDDQTIASASDD-------KTVKLWNRNGQLLQTLTGHSSSV----------------RGVAFSP 477 (577)
T ss_dssp C---CSSCEEEEEECTTSSEEEEEETT-------SEEEEEETTSCEEEEEECCSSCE----------------EEEEECT
T ss_pred C---CCCCeEEEEECCCCCEEEEEcCC-------CEEEEEECCCCEEEEEcCCCCCE----------------EEEEEcC
Confidence 1 1122222222 67777776654 35788887654443332211110 11222 2
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCc
Q 043540 339 NNELYAADHEKEEVRKFDKGRKL 361 (437)
Q Consensus 339 ~~~ly~~gg~~~~v~~yd~~~~~ 361 (437)
++++++.++....|.+||...+.
T Consensus 478 d~~~las~~~d~~i~iw~~~~~~ 500 (577)
T 2ymu_A 478 DGQTIASASDDKTVKLWNRNGQL 500 (577)
T ss_dssp TSCEEEEEETTSEEEEEETTSCE
T ss_pred CCCEEEEEeCCCEEEEEcCCCCE
Confidence 67888888777889999965543
No 226
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=92.33 E-value=1.6 Score=39.92 Aligned_cols=68 Identities=18% Similarity=0.143 Sum_probs=41.0
Q ss_pred ECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE-CC-EEEEEecccCCCCccCCeEEEEECCCC
Q 043540 227 LGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM-DG-KFYVIGGIGEGSSAMLTDVEMYDLETG 304 (437)
Q Consensus 227 ~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~g-~lyv~GG~~~~~~~~~~~v~~yd~~~~ 304 (437)
.++++|+.++.+ ..+.++|..+++....-..+........++. +| .+|+.+... ..+..||+.++
T Consensus 9 ~~~~~~v~~~~~------~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~-------~~i~~~d~~t~ 75 (349)
T 1jmx_B 9 AGHEYMIVTNYP------NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY-------GDIYGIDLDTC 75 (349)
T ss_dssp TTCEEEEEEETT------TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTT-------TEEEEEETTTT
T ss_pred CCCEEEEEeCCC------CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCC-------CcEEEEeCCCC
Confidence 367788887642 6789999998875432222221122233333 55 477775432 35899999987
Q ss_pred ceE
Q 043540 305 KWT 307 (437)
Q Consensus 305 ~W~ 307 (437)
+-.
T Consensus 76 ~~~ 78 (349)
T 1jmx_B 76 KNT 78 (349)
T ss_dssp EEE
T ss_pred cEE
Confidence 654
No 227
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=92.21 E-value=5.4 Score=41.21 Aligned_cols=70 Identities=11% Similarity=0.025 Sum_probs=39.1
Q ss_pred EeCCEEEEEcCccCCceEEEEECCCC---ceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEE
Q 043540 182 AVGTELLVFGKEVHGNAIYRYNLLTN---TWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWM 258 (437)
Q Consensus 182 ~~~~~lyv~GG~~~~~~v~~yd~~t~---~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~ 258 (437)
+-+++.++++.. ..++++|..++ .-+.+..... .......+-+++.++++.. ..++++|..+++..
T Consensus 117 SpDg~~l~~~~~---~~i~~~d~~~~~~~~~~~l~~~~~-~~~~~~~SPDG~~la~~~~-------~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 117 SPDAQRLLFPLG---GELYLYDLKQEGKAAVRQLTHGEG-FATDAKLSPKGGFVSFIRG-------RNLWVIDLASGRQM 185 (741)
T ss_dssp CTTSSEEEEEET---TEEEEEESSSCSTTSCCBCCCSSS-CEEEEEECTTSSEEEEEET-------TEEEEEETTTTEEE
T ss_pred CCCCCEEEEEeC---CcEEEEECCCCCcceEEEcccCCc-ccccccCCCCCCEEEEEeC-------CcEEEEecCCCCEE
Confidence 335555555433 68999999887 5544433211 1111112225554444331 37999999998877
Q ss_pred ecCC
Q 043540 259 PISS 262 (437)
Q Consensus 259 ~~~~ 262 (437)
.+..
T Consensus 186 ~~~~ 189 (741)
T 2ecf_A 186 QLTA 189 (741)
T ss_dssp ECCC
T ss_pred Eecc
Confidence 6643
No 228
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=92.21 E-value=1.3 Score=40.45 Aligned_cols=136 Identities=13% Similarity=0.188 Sum_probs=70.0
Q ss_pred CCEEEEEcCccCCceEEEEECCCC-ceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECC-CCcEEecC
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTN-TWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSI-TGTWMPIS 261 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~-~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~-t~~W~~~~ 261 (437)
++.||+.. .. +++||+..+ .|+.... .. .....++.++.||+... ...+..||+. ...|+...
T Consensus 70 ~g~l~v~t----~~-l~~~d~~g~~~~~~~~~--~~-~~~~~~~~~~~l~v~t~-------~~~l~~~d~~g~~~~~~~~ 134 (330)
T 3hxj_A 70 DGTIYFGS----DK-VYAINPDGTEKWRFDTK--KA-IVSDFTIFEDILYVTSM-------DGHLYAINTDGTEKWRFKT 134 (330)
T ss_dssp TTEECCSS----CE-EEEECCCGGGGGGSCC--------CCEEEETTEEEEECT-------TSEEEEECTTSCEEEEEEC
T ss_pred CCcEEEec----Cc-EEEECCCCcEEEEEECC--CC-cccCceEECCEEEEEec-------CCEEEEEcCCCCEEEEEcC
Confidence 66776632 22 899997322 3433211 11 11223334888887532 2568889987 33476543
Q ss_pred CCCcCCcCeeEEEE-CCEEEEEecccCCCCccCCeEEEEECCCC-ceEecCCCCCcccCCCCcccccccCCCCCEEEE-E
Q 043540 262 SMHKARKMCSGVFM-DGKFYVIGGIGEGSSAMLTDVEMYDLETG-KWTQITDMFPARIGSDGVSVISAAGEAPPLLAV-V 338 (437)
Q Consensus 262 ~~~~~r~~~~~~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~~~-~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 338 (437)
..+ ...+.+.. +|.||+... . ..+..||+... .|..-.. ..... .++. -
T Consensus 135 ~~~---~~~~~~~~~~g~l~vgt~-~-------~~l~~~d~~g~~~~~~~~~--~~~~~---------------~~~~d~ 186 (330)
T 3hxj_A 135 KKA---IYATPIVSEDGTIYVGSN-D-------NYLYAINPDGTEKWRFKTN--DAITS---------------AASIGK 186 (330)
T ss_dssp SSC---CCSCCEECTTSCEEEECT-T-------SEEEEECTTSCEEEEEECS--SCCCS---------------CCEECT
T ss_pred CCc---eeeeeEEcCCCEEEEEcC-C-------CEEEEECCCCCEeEEEecC--CCcee---------------eeEEcC
Confidence 221 11222333 678877432 1 24888998822 2554321 11111 1233 4
Q ss_pred CCEEEEEeCCCCeEEEEeCCC-CcEEEc
Q 043540 339 NNELYAADHEKEEVRKFDKGR-KLWRTL 365 (437)
Q Consensus 339 ~~~ly~~gg~~~~v~~yd~~~-~~W~~v 365 (437)
++.||+.. ..+++||... ..|...
T Consensus 187 ~g~l~v~t---~~l~~~d~~g~~~~~~~ 211 (330)
T 3hxj_A 187 DGTIYFGS---DKVYAINPDGTEKWNFY 211 (330)
T ss_dssp TCCEEEES---SSEEEECTTSCEEEEEC
T ss_pred CCEEEEEe---CEEEEECCCCcEEEEEc
Confidence 77887764 7799999442 346654
No 229
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=92.14 E-value=3.6 Score=39.52 Aligned_cols=142 Identities=10% Similarity=0.101 Sum_probs=69.9
Q ss_pred EEEEcCccCCceEEEEECCCCc---eec--CCCC-CCCccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCc-E
Q 043540 187 LLVFGKEVHGNAIYRYNLLTNT---WST--GMTM-NTPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGT-W 257 (437)
Q Consensus 187 lyv~GG~~~~~~v~~yd~~t~~---W~~--~~~~-~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W 257 (437)
+++.|+. ...+.+||..++. +.. ...+ .....-..++.. ++.+++.|+.+ ..+.+||..+.. .
T Consensus 196 ~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d------g~i~i~d~~~~~~~ 267 (430)
T 2xyi_A 196 YLLSASD--DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD------QKLMIWDTRNNNTS 267 (430)
T ss_dssp EEEEECT--TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETT------SEEEEEETTCSCSS
T ss_pred eEEEEeC--CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCC------CeEEEEECCCCCCC
Confidence 5555543 3468889987732 211 1111 111111222222 46677777643 668899998752 1
Q ss_pred EecCCCCcCCcCeeEEEE--CCE-EEEEecccCCCCccCCeEEEEECCCCc--eEecCCCCCcccCCCCcccccccCCCC
Q 043540 258 MPISSMHKARKMCSGVFM--DGK-FYVIGGIGEGSSAMLTDVEMYDLETGK--WTQITDMFPARIGSDGVSVISAAGEAP 332 (437)
Q Consensus 258 ~~~~~~~~~r~~~~~~~~--~g~-lyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (437)
..+..+.........+.+ ++. +++.|+.+ ..+..||+.+.. -..+.. ... . .
T Consensus 268 ~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~d-------g~v~vwd~~~~~~~~~~~~~----h~~---~---------v 324 (430)
T 2xyi_A 268 KPSHTVDAHTAEVNCLSFNPYSEFILATGSAD-------KTVALWDLRNLKLKLHSFES----HKD---E---------I 324 (430)
T ss_dssp SCSEEEECCSSCEEEEEECSSCTTEEEEEETT-------SEEEEEETTCTTSCSEEEEC----CSS---C---------E
T ss_pred cceeEeecCCCCeEEEEeCCCCCCEEEEEeCC-------CeEEEEeCCCCCCCeEEeec----CCC---C---------E
Confidence 111111111122233333 343 78888765 358899987632 111110 001 0 0
Q ss_pred CEEEEE-CC-EEEEEeCCCCeEEEEeCCC
Q 043540 333 PLLAVV-NN-ELYAADHEKEEVRKFDKGR 359 (437)
Q Consensus 333 ~~~~~~-~~-~ly~~gg~~~~v~~yd~~~ 359 (437)
..+... ++ .+++.++..+.|.+||..+
T Consensus 325 ~~i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 325 FQVQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp EEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred EEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 112222 23 5777777778899999876
No 230
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=91.96 E-value=2.7 Score=39.23 Aligned_cols=151 Identities=7% Similarity=-0.159 Sum_probs=76.5
Q ss_pred ceEEEeccCCCCeeeCCCCCCccccccCCceeEEe-CCE-EEEEcCcc---CCceEEEEECCCCceecCCCCCCCcccee
Q 043540 149 KEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAV-GTE-LLVFGKEV---HGNAIYRYNLLTNTWSTGMTMNTPRCLFG 223 (437)
Q Consensus 149 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~-lyv~GG~~---~~~~v~~yd~~t~~W~~~~~~~~~r~~~~ 223 (437)
..++.+|..+++...+...+.. . ......- ++. |++..... ....++++|..++.++.+.. ..+.....
T Consensus 168 ~~l~~~d~~~g~~~~~~~~~~~--~---~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~ 241 (396)
T 3c5m_A 168 CRLIKVDIETGELEVIHQDTAW--L---GHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE-HAEGESCT 241 (396)
T ss_dssp EEEEEEETTTCCEEEEEEESSC--E---EEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC-CCTTEEEE
T ss_pred ceEEEEECCCCcEEeeccCCcc--c---ccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec-cCCCcccc
Confidence 3567788887776655321111 0 0111222 233 44433211 11579999998888777654 21111122
Q ss_pred eEEE--CCE-EEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE-CCEEEEEecccC---------CCC
Q 043540 224 SASL--GEI-AILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM-DGKFYVIGGIGE---------GSS 290 (437)
Q Consensus 224 ~~~~--~~~-iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~g~lyv~GG~~~---------~~~ 290 (437)
...+ +++ |++.....+. ....++++|..+++.+.+...+. .. ....- +|+++++.+... ...
T Consensus 242 ~~~~spdg~~l~~~~~~~~~--~~~~l~~~d~~~g~~~~l~~~~~--~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~ 316 (396)
T 3c5m_A 242 HEFWIPDGSAMAYVSYFKGQ--TDRVIYKANPETLENEEVMVMPP--CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNI 316 (396)
T ss_dssp EEEECTTSSCEEEEEEETTT--CCEEEEEECTTTCCEEEEEECCS--EE-EEEECSSSSEEEEEECCC----------CC
T ss_pred ceEECCCCCEEEEEecCCCC--ccceEEEEECCCCCeEEeeeCCC--CC-CCccCCCCceEEEecCCcceeecccccccc
Confidence 2222 444 4444322221 12459999999988776654432 11 22233 788776644210 001
Q ss_pred ccCCeEEEEECCCCceEecC
Q 043540 291 AMLTDVEMYDLETGKWTQIT 310 (437)
Q Consensus 291 ~~~~~v~~yd~~~~~W~~~~ 310 (437)
.....++.+|+.+++...+.
T Consensus 317 ~~~~~i~~~d~~~~~~~~l~ 336 (396)
T 3c5m_A 317 ENDPFLYVLNTKAKSAQKLC 336 (396)
T ss_dssp CCCCEEEEEETTTTBCCEEE
T ss_pred CCCCcEEEEecccCceEEcc
Confidence 12356899999988766554
No 231
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=91.95 E-value=8.2 Score=36.19 Aligned_cols=189 Identities=14% Similarity=0.227 Sum_probs=93.3
Q ss_pred cEEEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCc
Q 043540 140 HWVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPR 219 (437)
Q Consensus 140 ~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r 219 (437)
.++........+..+|..+.+-...-......- ......-++..++.||.. ..+.+||..+..-... .++..+
T Consensus 79 ~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v----~~~~~s~~g~~las~~~d--~~v~iw~~~~~~~~~~-~~~~~~ 151 (380)
T 3iz6_a 79 NWIVSASQDGRLIVWNALTSQKTHAIKLHCPWV----MECAFAPNGQSVACGGLD--SACSIFNLSSQADRDG-NMPVSR 151 (380)
T ss_dssp SCEEEEETTSEEEEEETTTTEEEEEEECCCTTC----CCCEECTTSSEEEECCSS--SCCEEEECCCCSSCCC-SSTTCC
T ss_pred CEEEEEeCCCeEEEEECCCCccceEEecCCCCE----EEEEECCCCCEEEEeeCC--CcEEEEECCCCccccC-Ccccee
Confidence 345544555677888877665332111111110 011133456666777644 3466677765332111 111111
Q ss_pred --cce-----eeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecC--CCCcCCc-CeeEEEE---CCEEEEEec
Q 043540 220 --CLF-----GSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPIS--SMHKARK-MCSGVFM---DGKFYVIGG 284 (437)
Q Consensus 220 --~~~-----~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~--~~~~~r~-~~~~~~~---~g~lyv~GG 284 (437)
..| .+... ++..++.|+.+ ..+.+||..+++-...- ..+.... ....+.+ ++.+++.|+
T Consensus 152 ~~~gh~~~v~~~~~~~~~~~~l~s~s~D------~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs 225 (380)
T 3iz6_a 152 VLTGHKGYASSCQYVPDQETRLITGSGD------QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGS 225 (380)
T ss_dssp BCCCCSSCCCCCBCCSSSSSCEEEECTT------SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEE
T ss_pred eccCCCcceEEEEEecCCCCEEEEECCC------CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEE
Confidence 111 11111 23445566543 56788999887654321 2222221 2222333 678888888
Q ss_pred ccCCCCccCCeEEEEECCCCc--eEecCCCCCcccCCCCcccccccCCCCCEEEEE-CCEEEEEeCCCCeEEEEeCCCCc
Q 043540 285 IGEGSSAMLTDVEMYDLETGK--WTQITDMFPARIGSDGVSVISAAGEAPPLLAVV-NNELYAADHEKEEVRKFDKGRKL 361 (437)
Q Consensus 285 ~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ly~~gg~~~~v~~yd~~~~~ 361 (437)
.+ ..+..||+.... -..+. +|... ...++.. ++..++.|+..+.|.+||..+..
T Consensus 226 ~D-------~~v~~wd~~~~~~~~~~~~-------~h~~~---------v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~ 282 (380)
T 3iz6_a 226 CD-------TTVRLWDLRITSRAVRTYH-------GHEGD---------INSVKFFPDGQRFGTGSDDGTCRLFDMRTGH 282 (380)
T ss_dssp TT-------SCEEEEETTTTCCCCEEEC-------CCSSC---------CCEEEECTTSSEEEEECSSSCEEEEETTTTE
T ss_pred CC-------CeEEEEECCCCCcceEEEC-------CcCCC---------eEEEEEecCCCeEEEEcCCCeEEEEECCCCc
Confidence 76 358889986321 11111 11000 0123322 67778888888889999999876
Q ss_pred EEE
Q 043540 362 WRT 364 (437)
Q Consensus 362 W~~ 364 (437)
-..
T Consensus 283 ~~~ 285 (380)
T 3iz6_a 283 QLQ 285 (380)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 232
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=91.94 E-value=3.4 Score=39.41 Aligned_cols=94 Identities=16% Similarity=0.253 Sum_probs=59.1
Q ss_pred ceEEEEECCCCcEEecCCCCcCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCc
Q 043540 245 KSAELYNSITGTWMPISSMHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGV 322 (437)
Q Consensus 245 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~ 322 (437)
+.+.++|..+++-..+-.+........++.+ +|++.+.|+.+ ..+..||+.+++-.....-...+
T Consensus 125 ~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~D-------g~v~iWd~~~~~~~~~~~~h~~~------ 191 (420)
T 4gga_A 125 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS-------AEVQLWDVQQQKRLRNMTSHSAR------ 191 (420)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT-------SCEEEEETTTTEEEEEECCCSSC------
T ss_pred CEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECC-------CeEEEEEcCCCcEEEEEeCCCCc------
Confidence 5678888888876655444333333333333 68888888765 35889999887543221111111
Q ss_pred ccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCc
Q 043540 323 SVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKL 361 (437)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~ 361 (437)
...+..++.+++.|+....+..+|.....
T Consensus 192 ----------v~~~s~~~~~l~sgs~d~~i~~~d~~~~~ 220 (420)
T 4gga_A 192 ----------VGSLSWNSYILSSGSRSGHIHHHDVRVAE 220 (420)
T ss_dssp ----------EEEEEEETTEEEEEETTSEEEEEETTSSS
T ss_pred ----------eEEEeeCCCEEEEEeCCCceeEeeecccc
Confidence 23455678888888888889999987654
No 233
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=91.91 E-value=2.5 Score=44.01 Aligned_cols=151 Identities=11% Similarity=0.053 Sum_probs=85.9
Q ss_pred eCCEEEEEcCccCCceEEEEECCCCceecCC--CCCCCccceeeEE--ECCEEEEEeccCCCCCCCceEEEEECCCCcEE
Q 043540 183 VGTELLVFGKEVHGNAIYRYNLLTNTWSTGM--TMNTPRCLFGSAS--LGEIAILAGGCDPRGKLLKSAELYNSITGTWM 258 (437)
Q Consensus 183 ~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~--~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~ 258 (437)
.++.||+.-. ..+.|+++++....-+.+. .+..|+ ++++ .++.||+..-. ....++++++....-+
T Consensus 463 ~~g~LY~tD~--~~~~I~v~d~dg~~~~~l~~~~~~~P~---giavDp~~g~ly~td~~-----~~~~I~~~~~dG~~~~ 532 (699)
T 1n7d_A 463 IHSNIYWTDS--VLGTVSVADTKGVKRKTLFREQGSKPR---AIVVDPVHGFMYWTDWG-----TPAKIKKGGLNGVDIY 532 (699)
T ss_dssp SSSBCEECCT--TTSCEEEEBSSSCCEEEECCCSSCCCC---CEECCSSSSCCEECCCS-----SSCCEEBCCSSSCCCC
T ss_pred eCCcEEEEec--cCCeEEEEecCCCceEEEEeCCCCCcc---eEEEccCCCcEEEcccC-----CCCeEEEEeCCCCCee
Confidence 4678888642 2456889998766544432 233332 2333 36788876411 1256778777544332
Q ss_pred ecCCCCcCCcCeeEEEE---CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEE
Q 043540 259 PISSMHKARKMCSGVFM---DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLL 335 (437)
Q Consensus 259 ~~~~~~~~r~~~~~~~~---~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (437)
.+..-. .....++.+ +++||+.-.. ...|++||+....-+.+........ .+.++
T Consensus 533 ~l~~~~--l~~PnGlavd~~~~~LY~aD~~-------~~~I~~~d~dG~~~~~~~~~~~~~~-------------~P~gl 590 (699)
T 1n7d_A 533 SLVTEN--IQWPNGITLDLLSGRLYWVDSK-------LHSISSIDVNGGNRKTILEDEKRLA-------------HPFSL 590 (699)
T ss_dssp EESCSS--CSSCCCEEECTTTCCEEEEETT-------TTEEEEECSSSSCCEEECCCSSSCS-------------SCCCC
T ss_pred EEEeCC--CCCccEEEEeccCCEEEEEecC-------CCeEEEEccCCCceEEEEecCCcCC-------------CceEe
Confidence 222111 112223333 5789998533 3568999987543333332111111 12456
Q ss_pred EEECCEEEEEeCCCCeEEEEeCCCCcEEEc
Q 043540 336 AVVNNELYAADHEKEEVRKFDKGRKLWRTL 365 (437)
Q Consensus 336 ~~~~~~ly~~gg~~~~v~~yd~~~~~W~~v 365 (437)
++.++.||+.....+.|.++|+.+.+-..+
T Consensus 591 avd~~~lywtd~~~~~V~~~d~~~G~~~~~ 620 (699)
T 1n7d_A 591 AVFEDKVFWTDIINEAIFSANRLTGSDVNL 620 (699)
T ss_dssp EEETTEEEEECSTTTCEEEEETTTEEEEEC
T ss_pred EEECCEEEEEeCCCCeEEEEEccCCCceEE
Confidence 778899999998888999999987654443
No 234
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=91.88 E-value=3 Score=37.81 Aligned_cols=102 Identities=13% Similarity=0.032 Sum_probs=53.3
Q ss_pred ceEEEEECCCCcEEecCCCCcCC-cCeeEEE-ECC-EEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcc-cCCC
Q 043540 245 KSAELYNSITGTWMPISSMHKAR-KMCSGVF-MDG-KFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPAR-IGSD 320 (437)
Q Consensus 245 ~~~~~yd~~t~~W~~~~~~~~~r-~~~~~~~-~~g-~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~-~~~~ 320 (437)
..+.++|..+++-...-.++... ....+++ -+| .+|+.+... ..+..||+.+++-...-..+... ..
T Consensus 11 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~-------~~v~~~d~~~~~~~~~~~~~~~~~~~-- 81 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKS-------ESLVKIDLVTGETLGRIDLSTPEERV-- 81 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTT-------TEEEEEETTTCCEEEEEECCBTTEEE--
T ss_pred CeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCC-------CeEEEEECCCCCeEeeEEcCCccccc--
Confidence 67899999887643322222210 1222333 255 677776432 35899999887654321111100 00
Q ss_pred CcccccccCCCCCEEEEE-CC-EEEEEeC-----------CCCeEEEEeCCCCcEEE
Q 043540 321 GVSVISAAGEAPPLLAVV-NN-ELYAADH-----------EKEEVRKFDKGRKLWRT 364 (437)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~-~~-~ly~~gg-----------~~~~v~~yd~~~~~W~~ 364 (437)
..+..++.. +| .||+... ....|.+||..+.+...
T Consensus 82 ---------~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~ 129 (337)
T 1pby_B 82 ---------KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK 129 (337)
T ss_dssp ---------ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE
T ss_pred ---------ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEE
Confidence 000223332 44 6666631 24789999998876544
No 235
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=91.63 E-value=8.2 Score=35.59 Aligned_cols=213 Identities=12% Similarity=0.102 Sum_probs=107.3
Q ss_pred CCCCeeeCCCCC-CccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCceecCCCCC-CCccceeeEE-ECCEEEE
Q 043540 157 IHHRWMHLPPMN-ASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMN-TPRCLFGSAS-LGEIAIL 233 (437)
Q Consensus 157 ~~~~W~~l~~~p-~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~-~~r~~~~~~~-~~~~iyv 233 (437)
.-.+|..+.... .+.... ..+...++.+|+.|. ...+++-.-.-.+|+.+.... .+-....++. -++.+|+
T Consensus 64 gG~tW~~~~~~~~~~~~~~---~~i~~~~~~~~~~g~---~g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~ 137 (327)
T 2xbg_A 64 GGQTWEPRTLVLDHSDYRF---NSVSFQGNEGWIVGE---PPIMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEM 137 (327)
T ss_dssp TTSSCEECCCCCSCCCCEE---EEEEEETTEEEEEEE---TTEEEEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEE
T ss_pred CCCCCeECCCCCCCCCccE---EEEEecCCeEEEEEC---CCeEEEECCCCCCceECccccCCCCCeEEEEEECCCCEEE
Confidence 345898875322 111111 122344678888762 224554433457899876421 2222233333 3678887
Q ss_pred EeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE-CCEEEEEecccCCCCccCCeEEEE-ECCCCceEecCC
Q 043540 234 AGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM-DGKFYVIGGIGEGSSAMLTDVEMY-DLETGKWTQITD 311 (437)
Q Consensus 234 ~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~g~lyv~GG~~~~~~~~~~~v~~y-d~~~~~W~~~~~ 311 (437)
+|.. ..+++-+=.-.+|+.+..... ...+.+++. ++.+|++|... .++.- |..-.+|+.+..
T Consensus 138 ~~~~-------g~v~~S~DgG~tW~~~~~~~~-~~~~~~~~~~~~~~~~~g~~G--------~~~~S~d~gG~tW~~~~~ 201 (327)
T 2xbg_A 138 ITNV-------GAIYRTKDSGKNWQALVQEAI-GVMRNLNRSPSGEYVAVSSRG--------SFYSTWEPGQTAWEPHNR 201 (327)
T ss_dssp EETT-------CCEEEESSTTSSEEEEECSCC-CCEEEEEECTTSCEEEEETTS--------SEEEEECTTCSSCEEEEC
T ss_pred EeCC-------ccEEEEcCCCCCCEEeecCCC-cceEEEEEcCCCcEEEEECCC--------cEEEEeCCCCCceeECCC
Confidence 7641 123332222457998864322 223333333 56777665322 13433 333678998853
Q ss_pred CCCcccCCCCcccccccCCCCCEEEE-ECCEEEEEeCCCCeEEEEeCC-CCcEEEccC--CCCcccCCCcccEEEEEe-C
Q 043540 312 MFPARIGSDGVSVISAAGEAPPLLAV-VNNELYAADHEKEEVRKFDKG-RKLWRTLGR--LPEQASSMNGWGLAFRAC-G 386 (437)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~~~v~~yd~~-~~~W~~v~~--lp~~~~~~~~~~~a~~~~-~ 386 (437)
... ... ..++. -++++|+++. ...+++.+.. -.+|+.+.. ++... ++ .+++.. +
T Consensus 202 ~~~-~~~--------------~~~~~~~~g~~~~~~~-~G~~~~s~~D~G~tW~~~~~~~~~~~~----~~-~~v~~~~~ 260 (327)
T 2xbg_A 202 TTS-RRL--------------HNMGFTPDGRLWMIVN-GGKIAFSDPDNSENWGELLSPLRRNSV----GF-LDLAYRTP 260 (327)
T ss_dssp CSS-SCE--------------EEEEECTTSCEEEEET-TTEEEEEETTEEEEECCCBCTTSSCCS----CE-EEEEESSS
T ss_pred CCC-Ccc--------------ceeEECCCCCEEEEeC-CceEEEecCCCCCeeEeccCCcccCCc----ce-EEEEecCC
Confidence 221 111 12332 3678888864 3446666433 568988752 22211 11 222222 5
Q ss_pred CEEEEEcCCCCCCCCeeEEEeeecCCCCCCceecC
Q 043540 387 DQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKLLA 421 (437)
Q Consensus 387 ~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~ 421 (437)
+.+|++|+.. .++.-.....+|+.+.
T Consensus 261 ~~~~~~g~~g---------~i~~S~DgG~tW~~~~ 286 (327)
T 2xbg_A 261 NEVWLAGGAG---------ALLCSQDGGQTWQQDV 286 (327)
T ss_dssp SCEEEEESTT---------CEEEESSTTSSCEECG
T ss_pred CEEEEEeCCC---------eEEEeCCCCcccEEcC
Confidence 6888887622 1344344568999876
No 236
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=91.62 E-value=13 Score=37.67 Aligned_cols=116 Identities=17% Similarity=0.263 Sum_probs=68.2
Q ss_pred EEeCCEEEEEcCccCCceEEEEECCCCc--eecCCCCCC---Ccc---ceeeEEECCEEEEEeccCCCCCCCceEEEEEC
Q 043540 181 LAVGTELLVFGKEVHGNAIYRYNLLTNT--WSTGMTMNT---PRC---LFGSASLGEIAILAGGCDPRGKLLKSAELYNS 252 (437)
Q Consensus 181 ~~~~~~lyv~GG~~~~~~v~~yd~~t~~--W~~~~~~~~---~r~---~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~ 252 (437)
+..++.||+.... ..++.+|..|++ |+.-...+. +.+ ..+.++.+++||+... ...+..+|.
T Consensus 65 ~v~~g~vyv~~~~---~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~-------dg~l~AlD~ 134 (582)
T 1flg_A 65 IVSDGVIYVTASY---SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL-------DASVVALNK 134 (582)
T ss_dssp EEETTEEEEEETT---TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET-------TTEEEEEES
T ss_pred EEECCEEEEEcCC---CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC-------CCEEEEEEC
Confidence 6689999997642 248999998764 875433221 111 1344567899988632 257899999
Q ss_pred CCCc--EEecCCCCcCC--cCeeEEEECC------EEEEEecccCCCCccCCeEEEEECCCCc--eEe
Q 043540 253 ITGT--WMPISSMHKAR--KMCSGVFMDG------KFYVIGGIGEGSSAMLTDVEMYDLETGK--WTQ 308 (437)
Q Consensus 253 ~t~~--W~~~~~~~~~r--~~~~~~~~~g------~lyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~ 308 (437)
+|++ |+.-..-+... ...+-++.++ .+|+-.. . ........+..||+++++ |+.
T Consensus 135 ~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~-~-~e~~~~g~v~alD~~tG~~~W~~ 200 (582)
T 1flg_A 135 NTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSS-G-DEFGVVGRLFARDPDTGEEIWMR 200 (582)
T ss_dssp SSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCB-C-GGGCCBCEEEEECTTTCCEEEEE
T ss_pred CCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEecc-c-cccCCCCEEEEEECCCCCEEeec
Confidence 9887 97543221111 1223345566 6665321 1 011123469999998875 864
No 237
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=91.57 E-value=7.6 Score=35.08 Aligned_cols=148 Identities=16% Similarity=0.145 Sum_probs=72.6
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCC
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSM 263 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 263 (437)
++.+++.|+. ...+..++.......................-.+..++.|+.+ ..+.++|.....-.... .
T Consensus 97 dg~~l~s~~~--d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d------~~~~~~d~~~~~~~~~~-~ 167 (340)
T 4aow_A 97 DGQFALSGSW--DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD------KTIKLWNTLGVCKYTVQ-D 167 (340)
T ss_dssp TSSEEEEEET--TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETT------SCEEEECTTSCEEEEEC-S
T ss_pred CCCEEEEEcc--cccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCC------CeEEEEEeCCCceEEEE-e
Confidence 4555555543 2357778877665543322222211112222245555666644 34567776554322221 1
Q ss_pred CcCCcCeeEEEE----CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEE-E
Q 043540 264 HKARKMCSGVFM----DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV-V 338 (437)
Q Consensus 264 ~~~r~~~~~~~~----~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 338 (437)
.........+.+ .+.+++.++.+ ..+..||+.+.+-...-.-..... ..++. -
T Consensus 168 ~~~~~~v~~~~~~~~~~~~~~~s~~~d-------~~i~i~d~~~~~~~~~~~~h~~~v---------------~~~~~s~ 225 (340)
T 4aow_A 168 ESHSEWVSCVRFSPNSSNPIIVSCGWD-------KLVKVWNLANCKLKTNHIGHTGYL---------------NTVTVSP 225 (340)
T ss_dssp SSCSSCEEEEEECSCSSSCEEEEEETT-------SCEEEEETTTTEEEEEECCCSSCE---------------EEEEECT
T ss_pred ccccCcccceEEccCCCCcEEEEEcCC-------CEEEEEECCCCceeeEecCCCCcE---------------EEEEECC
Confidence 111122222222 23455666554 247889988765433211111000 11222 2
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCcE
Q 043540 339 NNELYAADHEKEEVRKFDKGRKLW 362 (437)
Q Consensus 339 ~~~ly~~gg~~~~v~~yd~~~~~W 362 (437)
++++++.|+..+.|.+||..+.+-
T Consensus 226 ~~~~l~s~s~Dg~i~iwd~~~~~~ 249 (340)
T 4aow_A 226 DGSLCASGGKDGQAMLWDLNEGKH 249 (340)
T ss_dssp TSSEEEEEETTCEEEEEETTTTEE
T ss_pred CCCEEEEEeCCCeEEEEEeccCce
Confidence 577788887888899999987653
No 238
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=91.50 E-value=14 Score=37.98 Aligned_cols=221 Identities=10% Similarity=0.025 Sum_probs=107.2
Q ss_pred eEEEeccCCCCeeeCCCCCC---ccccccCCceeEEeCCEEEEEcC---ccCCceEEEEECCCCceecCCCCCCCcccee
Q 043540 150 EWEAFDPIHHRWMHLPPMNA---SDCFMCADKESLAVGTELLVFGK---EVHGNAIYRYNLLTNTWSTGMTMNTPRCLFG 223 (437)
Q Consensus 150 ~~~~yDp~~~~W~~l~~~p~---~~~~~~~~~~~~~~~~~lyv~GG---~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~ 223 (437)
.++..+.....|..+-.... ... ........+-+++.+++.. ......++++|..+++......++.......
T Consensus 95 ~l~~~~~~~~~~~~l~d~~~~a~~~~-~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~ 173 (695)
T 2bkl_A 95 ILYWRQGESGQEKVLLDPNGWSKDGT-VSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATP 173 (695)
T ss_dssp EEEEEESTTSCCEEEECGGGSSSSSC-EEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCC
T ss_pred EEEEEcCCCCCcEEEEchHHhccCCC-EEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccce
Confidence 45666666666766533211 100 0011112233566555532 1223589999999988751111211111111
Q ss_pred eEEECCEEEEEeccCCCC-------CCCceEEEEECCCCcE--EecCCCCcCCcCeeEEEE--CCEEEEEecccCCCCcc
Q 043540 224 SASLGEIAILAGGCDPRG-------KLLKSAELYNSITGTW--MPISSMHKARKMCSGVFM--DGKFYVIGGIGEGSSAM 292 (437)
Q Consensus 224 ~~~~~~~iyv~GG~~~~~-------~~~~~~~~yd~~t~~W--~~~~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~ 292 (437)
+-+-+++.++++..+..+ .....+++++..++.- +.+...+........+.. ||+..++.... . ..
T Consensus 174 ~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~-~--~~ 250 (695)
T 2bkl_A 174 KWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILR-G--WS 250 (695)
T ss_dssp EECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEE-T--TT
T ss_pred EEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeC-C--CC
Confidence 222255655555543321 1235688899887752 223222222122222222 66655554433 1 02
Q ss_pred CCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeC---CCCeEEEEeCCCCc---EEEcc
Q 043540 293 LTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADH---EKEEVRKFDKGRKL---WRTLG 366 (437)
Q Consensus 293 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg---~~~~v~~yd~~~~~---W~~v~ 366 (437)
...++.+|..+..|+.+..-..... ..+..+|.+|+... ....|+++|..+.. |+.+.
T Consensus 251 ~~~l~~~~~~~~~~~~l~~~~~~~~----------------~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~ 314 (695)
T 2bkl_A 251 ENDVYWKRPGEKDFRLLVKGVGAKY----------------EVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIV 314 (695)
T ss_dssp EEEEEEECTTCSSCEEEEECSSCCE----------------EEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEE
T ss_pred ceEEEEEcCCCCceEEeecCCCceE----------------EEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEe
Confidence 3457777877777877753221111 12335666666643 24689999987754 88775
Q ss_pred CCCCcccCCCcccEEEEEeCCEEEEEcCC
Q 043540 367 RLPEQASSMNGWGLAFRACGDQLIVIGGP 395 (437)
Q Consensus 367 ~lp~~~~~~~~~~~a~~~~~~~l~v~GG~ 395 (437)
.-..... . ..+...+++|++....
T Consensus 315 ~~~~~~~-l----~~~~~~~~~lv~~~~~ 338 (695)
T 2bkl_A 315 PEDSSAS-L----LSVSIVGGHLSLEYLK 338 (695)
T ss_dssp CCCSSCE-E----EEEEEETTEEEEEEEE
T ss_pred cCCCCCe-E----EEEEEECCEEEEEEEE
Confidence 3211111 0 1123347888877643
No 239
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=91.39 E-value=7.8 Score=35.27 Aligned_cols=142 Identities=12% Similarity=0.141 Sum_probs=67.8
Q ss_pred cEEEEEecCceEEEeccCCCCeee-CCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCceecCCCCCCC
Q 043540 140 HWVYFSCKLKEWEAFDPIHHRWMH-LPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTP 218 (437)
Q Consensus 140 ~~l~~~~~~~~~~~yDp~~~~W~~-l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~ 218 (437)
.+++.......+..||..+++-.. +..-..+. .+ ....-++.+++.|+.. ..+.+||.....-..+..-.
T Consensus 78 ~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v--~~---~~~~~~~~~l~s~s~D--~~i~vwd~~~~~~~~~~~h~-- 148 (319)
T 3frx_A 78 AYALSASWDKTLRLWDVATGETYQRFVGHKSDV--MS---VDIDKKASMIISGSRD--KTIKVWTIKGQCLATLLGHN-- 148 (319)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCSSCE--EE---EEECTTSCEEEEEETT--SCEEEEETTSCEEEEECCCS--
T ss_pred CEEEEEeCCCEEEEEECCCCCeeEEEccCCCcE--EE---EEEcCCCCEEEEEeCC--CeEEEEECCCCeEEEEeccC--
Confidence 344444455678888887765321 11100000 00 0011245555665433 35777887654333222110
Q ss_pred ccceeeEEE-------CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE--CCEEEEEecccCCC
Q 043540 219 RCLFGSASL-------GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM--DGKFYVIGGIGEGS 289 (437)
Q Consensus 219 r~~~~~~~~-------~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~ 289 (437)
..-...... ++..++.|+.+ ..+.++|..+.+-.. .+.........+.+ ++++++.|+.+
T Consensus 149 ~~v~~~~~~~~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~--~~~~h~~~v~~~~~sp~g~~l~s~~~d--- 217 (319)
T 3frx_A 149 DWVSQVRVVPNEKADDDSVTIISAGND------KMVKAWNLNQFQIEA--DFIGHNSNINTLTASPDGTLIASAGKD--- 217 (319)
T ss_dssp SCEEEEEECCC------CCEEEEEETT------SCEEEEETTTTEEEE--EECCCCSCEEEEEECTTSSEEEEEETT---
T ss_pred CcEEEEEEccCCCCCCCccEEEEEeCC------CEEEEEECCcchhhe--eecCCCCcEEEEEEcCCCCEEEEEeCC---
Confidence 000111111 23356666644 457888887654322 11112222223333 67888887765
Q ss_pred CccCCeEEEEECCCCc
Q 043540 290 SAMLTDVEMYDLETGK 305 (437)
Q Consensus 290 ~~~~~~v~~yd~~~~~ 305 (437)
..+..||+.+.+
T Consensus 218 ----g~i~iwd~~~~~ 229 (319)
T 3frx_A 218 ----GEIMLWNLAAKK 229 (319)
T ss_dssp ----CEEEEEETTTTE
T ss_pred ----CeEEEEECCCCc
Confidence 358889988764
No 240
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=91.39 E-value=4.4 Score=40.19 Aligned_cols=171 Identities=16% Similarity=0.225 Sum_probs=80.9
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEE-ECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCC
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSAS-LGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISS 262 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 262 (437)
++..++.|+. ...+.+||.....-..+.... .. -.+++. -+++.++.++.+ ..+.+||.....-..+..
T Consensus 396 dg~~l~~~~~--d~~v~~~~~~~~~~~~~~~~~-~~-v~~~~~s~d~~~l~~~~~d------~~v~~w~~~~~~~~~~~~ 465 (577)
T 2ymu_A 396 DGQTIASASD--DKTVKLWNRNGQLLQTLTGHS-SS-VWGVAFSPDDQTIASASDD------KTVKLWNRNGQLLQTLTG 465 (577)
T ss_dssp TSSCEEEEET--TSEEEEECTTCCEEEEEECCS-SC-EEEEEECTTSSEEEEEETT------SEEEEEETTSCEEEEEEC
T ss_pred CCCEEEEEeC--CCEEEEEeCCCCEEEEecCCC-CC-eEEEEECCCCCEEEEEcCC------CEEEEEECCCCEEEEEcC
Confidence 4555555533 245777885333222221111 11 111222 256666666643 467888865543333321
Q ss_pred CCcCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEE-EC
Q 043540 263 MHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV-VN 339 (437)
Q Consensus 263 ~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 339 (437)
.......+.+ ++++.+.++.+ ..+..||.....-..+..- .. .+ ..++. -+
T Consensus 466 ---~~~~v~~~~~spd~~~las~~~d-------~~i~iw~~~~~~~~~~~~h----~~---~v---------~~l~~s~d 519 (577)
T 2ymu_A 466 ---HSSSVRGVAFSPDGQTIASASDD-------KTVKLWNRNGQLLQTLTGH----SS---SV---------RGVAFSPD 519 (577)
T ss_dssp ---CSSCEEEEEECTTSCEEEEEETT-------SEEEEEETTSCEEEEEECC----SS---CE---------EEEEECTT
T ss_pred ---CCCCEEEEEEcCCCCEEEEEeCC-------CEEEEEcCCCCEEEEEeCC----CC---CE---------EEEEEcCC
Confidence 1122222222 78888877654 3577888654332222211 11 00 11222 26
Q ss_pred CEEEEEeCCCCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCCC
Q 043540 340 NELYAADHEKEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPR 396 (437)
Q Consensus 340 ~~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~ 396 (437)
+++++.++....|.+||...+.-..+..-.... .++++ ..+++.++.||.+
T Consensus 520 g~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v-----~~~~f-s~dg~~l~s~~~D 570 (577)
T 2ymu_A 520 GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV-----WGVAF-SPDGQTIASASSD 570 (577)
T ss_dssp SSCEEEEETTSEEEEECTTSCEEEEEECCSSCE-----EEEEE-CTTSSCEEEEETT
T ss_pred CCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCE-----EEEEE-cCCCCEEEEEeCC
Confidence 777777777778999997554443332211111 12222 2356666777654
No 241
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=91.28 E-value=9.6 Score=35.68 Aligned_cols=188 Identities=11% Similarity=0.122 Sum_probs=94.0
Q ss_pred EEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEe---CCEEEEEcCccCCceEEEEECCCCc--eecCCCCC
Q 043540 142 VYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAV---GTELLVFGKEVHGNAIYRYNLLTNT--WSTGMTMN 216 (437)
Q Consensus 142 l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~---~~~lyv~GG~~~~~~v~~yd~~t~~--W~~~~~~~ 216 (437)
++.......+..||..+++-...-....+.. +...-..+.. ++.+++.|+.. ..+.+||..+.. -..+..
T Consensus 173 l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~sgs~D--~~v~~wd~~~~~~~~~~~~~-- 247 (380)
T 3iz6_a 173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSG-HTADVLSLSINSLNANMFISGSCD--TTVRLWDLRITSRAVRTYHG-- 247 (380)
T ss_dssp EEEECTTSCEEEECTTTCCEEEEECCCSSSS-CCSCEEEEEECSSSCCEEEEEETT--SCEEEEETTTTCCCCEEECC--
T ss_pred EEEECCCCcEEEEEcCCCcEEEEeecccCCC-CccCeEEEEeecCCCCEEEEEECC--CeEEEEECCCCCcceEEECC--
Confidence 4444455678889988776543211111111 1100011222 56677777543 468888976321 111111
Q ss_pred CCccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCc-----CCcCeeEE--EECCEEEEEecccC
Q 043540 217 TPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHK-----ARKMCSGV--FMDGKFYVIGGIGE 287 (437)
Q Consensus 217 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~-----~r~~~~~~--~~~g~lyv~GG~~~ 287 (437)
......++.+ ++..++.|+.+ ..+.+||..++.-...-.... .......+ ..+|++.+.|+.+
T Consensus 248 -h~~~v~~v~~~p~~~~l~s~s~D------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d- 319 (380)
T 3iz6_a 248 -HEGDINSVKFFPDGQRFGTGSDD------GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN- 319 (380)
T ss_dssp -CSSCCCEEEECTTSSEEEEECSS------SCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTT-
T ss_pred -cCCCeEEEEEecCCCeEEEEcCC------CeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECC-
Confidence 0111112222 56677777754 457889998875332211111 11112222 2378887777654
Q ss_pred CCCccCCeEEEEECCCCceE-ecCCCCCcccCCCCcccccccCCCCCEEEE-ECCEEEEEeCCCCeEEEEeCCCC
Q 043540 288 GSSAMLTDVEMYDLETGKWT-QITDMFPARIGSDGVSVISAAGEAPPLLAV-VNNELYAADHEKEEVRKFDKGRK 360 (437)
Q Consensus 288 ~~~~~~~~v~~yd~~~~~W~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~~~v~~yd~~~~ 360 (437)
..+..||..+.+-. .+..+...... .+ ..++. -++..++.|+..+.|.+|+....
T Consensus 320 ------g~i~vwd~~~~~~~~~~~~~~~~h~~---~v---------~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 320 ------GDCYVWDTLLAEMVLNLGTLQNSHEG---RI---------SCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp ------SCEEEEETTTCCEEEEECCSCSSCCC---CC---------CEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred ------CCEEEEECCCCceEEEEecccCCCCC---ce---------EEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 24889998776543 22222222221 00 12222 36777888887788999887653
No 242
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=91.25 E-value=14 Score=37.65 Aligned_cols=208 Identities=12% Similarity=0.050 Sum_probs=116.1
Q ss_pred cccEEEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEE--eCCEEEEEcCccCCceEEEEECCCCceecCCCC
Q 043540 138 IEHWVYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLA--VGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTM 215 (437)
Q Consensus 138 ~~~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~ 215 (437)
.+++|.+. ...++...|+.+..-..+-+++.-.... .+.. .++.||+..- ....++++++.....+.+...
T Consensus 5 p~~~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~----~l~~d~~~~~lywtD~--~~~~I~r~~~~g~~~~~v~~~ 77 (628)
T 4a0p_A 5 PEAFLLFS-RRADIRRISLETNNNNVAIPLTGVKEAS----ALDFDVTDNRIYWTDI--SLKTISRAFMNGSALEHVVEF 77 (628)
T ss_dssp CCCEEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEE----EEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECS
T ss_pred CCcEEEEE-eCCcEEEEECCCCCcceEEEcCCCCceE----EEEEECCCCEEEEEEC--CCCeEEEEECCCCCcEEEEeC
Confidence 45666665 4577888888765433322222211111 1111 2578888742 346788898876555443221
Q ss_pred CCCccceeeEE--ECCEEEEEeccCCCCCCCceEEEEECCCCcEEecC--CCCcCCcCeeEEEE--CCEEEEEe-cccCC
Q 043540 216 NTPRCLFGSAS--LGEIAILAGGCDPRGKLLKSAELYNSITGTWMPIS--SMHKARKMCSGVFM--DGKFYVIG-GIGEG 288 (437)
Q Consensus 216 ~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~--~~~~~r~~~~~~~~--~g~lyv~G-G~~~~ 288 (437)
.. ..-.++++ .+++||+.-. ....++++++....=+.+. .+..| ...++- +|.||+.- |.
T Consensus 78 g~-~~P~GlAvD~~~~~LY~tD~------~~~~I~v~~~dG~~~~~l~~~~l~~P---~~iavdp~~G~lY~tD~g~--- 144 (628)
T 4a0p_A 78 GL-DYPEGMAVDWLGKNLYWADT------GTNRIEVSKLDGQHRQVLVWKDLDSP---RALALDPAEGFMYWTEWGG--- 144 (628)
T ss_dssp SC-SCCCEEEEETTTTEEEEEET------TTTEEEEEETTSTTCEEEECSSCCCE---EEEEEETTTTEEEEEECSS---
T ss_pred CC-CCcceEEEEeCCCEEEEEEC------CCCEEEEEecCCCcEEEEEeCCCCCc---ccEEEccCCCeEEEeCCCC---
Confidence 11 11234454 4789999843 2368999998765433332 22222 233343 68999974 21
Q ss_pred CCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE--CCEEEEEeCCCCeEEEEeCCCCcEEEcc
Q 043540 289 SSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV--NNELYAADHEKEEVRKFDKGRKLWRTLG 366 (437)
Q Consensus 289 ~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ly~~gg~~~~v~~yd~~~~~W~~v~ 366 (437)
...+++.++....-+.+.. ... +|.++++- +++||+.+...+.|+++|.....=+.+.
T Consensus 145 ----~~~I~r~~~dG~~~~~l~~---~~~-------------~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~ 204 (628)
T 4a0p_A 145 ----KPKIDRAAMDGSERTTLVP---NVG-------------RANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIA 204 (628)
T ss_dssp ----SCEEEEEETTSCSCEEEEC---SCS-------------SEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred ----CCEEEEEeCCCCceEEEEC---CCC-------------CcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEee
Confidence 2468888887665444422 111 11234443 6899999988889999998653323332
Q ss_pred -CCCCcccCCCcccEEEEEeCCEEEEEc
Q 043540 367 -RLPEQASSMNGWGLAFRACGDQLIVIG 393 (437)
Q Consensus 367 -~lp~~~~~~~~~~~a~~~~~~~l~v~G 393 (437)
.++.+ +| +++.+++||+.-
T Consensus 205 ~~l~~P------~g--lav~~~~ly~tD 224 (628)
T 4a0p_A 205 DDLPHP------FG--LTQYQDYIYWTD 224 (628)
T ss_dssp ECCSCE------EE--EEEETTEEEEEE
T ss_pred ccCCCc------eE--EEEECCEEEEec
Confidence 22221 34 445678999884
No 243
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=91.23 E-value=2.5 Score=37.11 Aligned_cols=63 Identities=14% Similarity=0.123 Sum_probs=38.0
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCcEEE----cc-CCCCcc--cCCCcccEEEEE-eCCEEEEEcCCCCCCCCeeEEEeeec
Q 043540 339 NNELYAADHEKEEVRKFDKGRKLWRT----LG-RLPEQA--SSMNGWGLAFRA-CGDQLIVIGGPRDSGGGIVELNGWVP 410 (437)
Q Consensus 339 ~~~ly~~gg~~~~v~~yd~~~~~W~~----v~-~lp~~~--~~~~~~~~a~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~ 410 (437)
++++|++- .+..|+||..+++-.. +. .+|... ......-+|+.. .++++|++-|.. .|+|
T Consensus 127 ~gk~yfFk--G~~yw~~d~~~~~~~~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG~~----------ywr~ 194 (225)
T 3oyo_A 127 GKEVYLFK--GNKYVRIAYDSKQLVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKGQN----------YVRI 194 (225)
T ss_dssp TTEEEEEE--TTEEEEEETTTTEEEEEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEETTE----------EEEE
T ss_pred CCcEEEEe--CCeEEEEECCCCeecCCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEECCE----------EEEE
Confidence 68999995 4679999987766543 11 122110 000112345433 478999998753 7888
Q ss_pred CCC
Q 043540 411 DEG 413 (437)
Q Consensus 411 d~~ 413 (437)
|..
T Consensus 195 d~~ 197 (225)
T 3oyo_A 195 DFT 197 (225)
T ss_dssp ECC
T ss_pred eCC
Confidence 876
No 244
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=91.13 E-value=2 Score=41.35 Aligned_cols=102 Identities=8% Similarity=0.017 Sum_probs=52.9
Q ss_pred EEEEeccCCCCCCCceEEEEECCCCc---EEe--cCCCCcCCcCeeEEEE---CCEEEEEecccCCCCccCCeEEEEECC
Q 043540 231 AILAGGCDPRGKLLKSAELYNSITGT---WMP--ISSMHKARKMCSGVFM---DGKFYVIGGIGEGSSAMLTDVEMYDLE 302 (437)
Q Consensus 231 iyv~GG~~~~~~~~~~~~~yd~~t~~---W~~--~~~~~~~r~~~~~~~~---~g~lyv~GG~~~~~~~~~~~v~~yd~~ 302 (437)
+++.|+.+ ..+.+||..++. +.. ...+.........+.. ++.+++.++.+ ..+..||+.
T Consensus 196 ~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d-------g~i~i~d~~ 262 (430)
T 2xyi_A 196 YLLSASDD------HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD-------QKLMIWDTR 262 (430)
T ss_dssp EEEEECTT------SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETT-------SEEEEEETT
T ss_pred eEEEEeCC------CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCC-------CeEEEEECC
Confidence 66777654 457889987731 221 1111111112222333 46677776654 358899998
Q ss_pred CCc-eEecCCCCCcccCCCCcccccccCCCCCEEEEE--CC-EEEEEeCCCCeEEEEeCCC
Q 043540 303 TGK-WTQITDMFPARIGSDGVSVISAAGEAPPLLAVV--NN-ELYAADHEKEEVRKFDKGR 359 (437)
Q Consensus 303 ~~~-W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~ly~~gg~~~~v~~yd~~~ 359 (437)
+.. ...+..+...... ...+.+ ++ .+++.|+..+.|.+||..+
T Consensus 263 ~~~~~~~~~~~~~~~~~--------------v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~ 309 (430)
T 2xyi_A 263 NNNTSKPSHTVDAHTAE--------------VNCLSFNPYSEFILATGSADKTVALWDLRN 309 (430)
T ss_dssp CSCSSSCSEEEECCSSC--------------EEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred CCCCCcceeEeecCCCC--------------eEEEEeCCCCCCEEEEEeCCCeEEEEeCCC
Confidence 652 1111111000000 122233 23 4788888888999999976
No 245
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=91.10 E-value=6.8 Score=34.13 Aligned_cols=146 Identities=16% Similarity=0.138 Sum_probs=75.1
Q ss_pred ECCEEEEEeccCCCCCCCceEEEEECCCCcE--Eec----CCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEE
Q 043540 227 LGEIAILAGGCDPRGKLLKSAELYNSITGTW--MPI----SSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYD 300 (437)
Q Consensus 227 ~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W--~~~----~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd 300 (437)
.++++|++-| ...|+++.....+ ..+ +.+|. .--++...+|++|++-|.. +++|+
T Consensus 27 ~~g~~yfFkg--------~~~Wr~~~~~~~~~p~~Is~~wpgLP~--~IDAA~~~~~~~yfFkG~~---------yw~~~ 87 (219)
T 1hxn_A 27 NHGATYVFSG--------SHYWRLDTNRDGWHSWPIAHQWPQGPS--TVDAAFSWEDKLYLIQDTK---------VYVFL 87 (219)
T ss_dssp TTSCEEEEET--------TEEEESSSSSCTTCCEEGGGTCTTSCS--SCSEEEEETTEEEEEETTE---------EEEEE
T ss_pred CCCcEEEEeC--------CEEEEEcCCCCCCCceEhhhhccCCCC--CccEEEEECCcEEEecCCE---------EEEEe
Confidence 4789999977 3455555433221 111 12332 2223445599999997754 88898
Q ss_pred CCCCceEecCCCCCcccCCCCccccccc--CCCCCEEEEE--CCEEEEEeCCCCeEEEEeCCC---CcEEEccCCCCccc
Q 043540 301 LETGKWTQITDMFPARIGSDGVSVISAA--GEAPPLLAVV--NNELYAADHEKEEVRKFDKGR---KLWRTLGRLPEQAS 373 (437)
Q Consensus 301 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~ly~~gg~~~~v~~yd~~~---~~W~~v~~lp~~~~ 373 (437)
..++ .+..+..|..... ...+|.. -...-+++.. ++++|++- .+..|+||..+ ..|...+.+|...
T Consensus 88 ~~~~-~~~~~gyPk~i~~---~~G~p~~~~~~~IDAA~~~~~~gk~yfFk--G~~ywr~d~~~~P~~i~~~~~g~p~~v- 160 (219)
T 1hxn_A 88 TKGG-YTLVNGYPKRLEK---ELGSPPVISLEAVDAAFVCPGSSRLHIMA--GRRLWWLDLKSGAQATWTELPWPHEKV- 160 (219)
T ss_dssp CSSS-CEECTTCCEEHHH---HHCCCSSCCCSCCCEEECCTTCCEEEEEE--TTEEEEEEGGGGGGCCCEEECCSCSCC-
T ss_pred CCCC-ceecCCCCeehhh---ccCCCCcccccccceeEEecCCCEEEEEe--CCEEEEEeCCCCceEhhhcCCCCCCCc-
Confidence 7542 2222222211110 0001110 0001223332 58999995 45789999754 2354443333332
Q ss_pred CCCcccEEEEE-----------eCCEEEEEcCCCCCCCCeeEEEeeecCCC
Q 043540 374 SMNGWGLAFRA-----------CGDQLIVIGGPRDSGGGIVELNGWVPDEG 413 (437)
Q Consensus 374 ~~~~~~~a~~~-----------~~~~l~v~GG~~~~~~~~~~~~~~~~d~~ 413 (437)
-+|+.. .++.+|++-|.. -|+||..
T Consensus 161 -----dAa~~~~~~~~~~~~~~~~~~~YFFkg~~----------y~r~~~~ 196 (219)
T 1hxn_A 161 -----DGALCMEKPLGPNSCSTSGPNLYLIHGPN----------LYCYRHV 196 (219)
T ss_dssp -----SEEEEESSCSSSCCSCSSSCEEEEEETTE----------EEEESSH
T ss_pred -----CEEEEccccccccceeccCCeEEEEECCE----------EEEEeCC
Confidence 245542 346799987753 6777753
No 246
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=91.01 E-value=6.8 Score=33.45 Aligned_cols=146 Identities=12% Similarity=0.044 Sum_probs=75.7
Q ss_pred eEEeCCEEEEEcCccCCceEEEEECCC---CceecC----CCCCCCccceeeEE--ECCEEEEEeccCCCCCCCceEEEE
Q 043540 180 SLAVGTELLVFGKEVHGNAIYRYNLLT---NTWSTG----MTMNTPRCLFGSAS--LGEIAILAGGCDPRGKLLKSAELY 250 (437)
Q Consensus 180 ~~~~~~~lyv~GG~~~~~~v~~yd~~t---~~W~~~----~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~y 250 (437)
++...+++|+|-| +.+|+++... +-=+.+ +.+|. ..-++. .++++|++-| +..++|
T Consensus 11 ~~~~~g~~~fFkg----~~~w~~~~~~~~~gyP~~I~~~w~glP~---~iDAa~~~~~g~~yfFkg--------~~yw~~ 75 (196)
T 3c7x_A 11 VAMLRGEMFVFKE----RWFWRVRNNQVMDGYPMPIGQFWRGLPA---SINTAYERKDGKFVFFKG--------DKHWVF 75 (196)
T ss_dssp EEEETTEEEEEET----TEEEEEETTEECTTCSEEHHHHSTTCCS---SCCEEEECTTSCEEEEET--------TEEEEE
T ss_pred EEEcCCEEEEEEC----CEEEEEECCccCCCCceEhhHhccCCCC---CccEEEEeCCCcEEEecC--------CEEEEE
Confidence 3567899999964 3567775421 000011 12332 222222 4688999977 567888
Q ss_pred ECCCCcE---EecCC----CCcCCcCeeEEE-E--CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCC
Q 043540 251 NSITGTW---MPISS----MHKARKMCSGVF-M--DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSD 320 (437)
Q Consensus 251 d~~t~~W---~~~~~----~~~~r~~~~~~~-~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~ 320 (437)
+..+... +.+.. +|.. ..-+++ . ++++|++-|.. .++||..+++-.. .-|.....-
T Consensus 76 ~~~~~~~gyPk~I~~~~~glP~~--~IDAA~~~~~~g~~yfFkG~~---------yw~yd~~~~~v~~--gyPk~i~~~- 141 (196)
T 3c7x_A 76 DEASLEPGYPKHIKELGRGLPTD--KIDAALFWMPNGKTYFFRGNK---------YYRFNEELRAVDS--EYPKNIKVW- 141 (196)
T ss_dssp ETTEECTTCSEEGGGTCBSCCSS--CCSEEEEETTTTEEEEEETTE---------EEEEETTTTEECT--TCSEEGGGS-
T ss_pred eCCcccCCCCeEhhhcCCCCCCC--cccEEEEEccCCEEEEEECCE---------EEEEeCCcccccC--CCCccHHHC-
Confidence 7542110 12222 2211 223333 3 69999997764 8899988764321 111110000
Q ss_pred CcccccccCCCCCEEEEE-CC-EEEEEeCCCCeEEEEeCCCCc
Q 043540 321 GVSVISAAGEAPPLLAVV-NN-ELYAADHEKEEVRKFDKGRKL 361 (437)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~-~~-~ly~~gg~~~~v~~yd~~~~~ 361 (437)
..+|. ...++... ++ ++|++- ....++||..+++
T Consensus 142 --~gip~---~idaAf~~~~~~~~YfFk--g~~y~r~d~~~~~ 177 (196)
T 3c7x_A 142 --EGIPE---SPRGSFMGSDEVFTYFYK--GNKYWKFNNQKLK 177 (196)
T ss_dssp --BTCCS---SCSEEEECTTSSEEEEEE--TTEEEEEETTTTE
T ss_pred --CCcCC---CcceeEEecCCCEEEEEE--CCEEEEEECCcce
Confidence 00110 01233444 44 899994 5678999998764
No 247
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=90.96 E-value=11 Score=35.90 Aligned_cols=146 Identities=10% Similarity=0.016 Sum_probs=85.6
Q ss_pred eCCEEEEEcCccCCceEEEEECCCCceecCC--CCCCCccceeeEE--ECCEEEEEeccCCCCCCCceEEEEECCCCcEE
Q 043540 183 VGTELLVFGKEVHGNAIYRYNLLTNTWSTGM--TMNTPRCLFGSAS--LGEIAILAGGCDPRGKLLKSAELYNSITGTWM 258 (437)
Q Consensus 183 ~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~--~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~ 258 (437)
.++.||+.-. ....+.++++....-+.+. .+..| .+.++ .++.||+.--. ....++++++....=+
T Consensus 169 ~~~~lY~~d~--~~~~I~~~~~~g~~~~~l~~~~~~~P---~~iavdp~~g~ly~td~~-----~~~~I~~~~~dG~~~~ 238 (400)
T 3p5b_L 169 IHSNIYWTDS--VLGTVSVADTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWG-----TPAKIKKGGLNGVDIY 238 (400)
T ss_dssp TTTEEEEEET--TTTEEEEECTTTCSEEEEEECSSCCE---EEEEEETTTTEEEEEECS-----SSCCEEEEETTSCSCE
T ss_pred cCCceEEEEC--CCCeEEEEeCCCCceEEEEeCCCCCc---ceEEEecccCeEEEEeCC-----CCCEEEEEeCCCCccE
Confidence 3788998843 2357888988766544432 23223 23444 36899987421 1256889988754333
Q ss_pred ecCCCCcCCcCee-EEEE--CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEE
Q 043540 259 PISSMHKARKMCS-GVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLL 335 (437)
Q Consensus 259 ~~~~~~~~r~~~~-~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (437)
.+.. ....... .++- +++||+.-.. .+.|+++|+....-+.+........ .+.++
T Consensus 239 ~~~~--~~l~~P~glavd~~~~~lY~aD~~-------~~~I~~~d~dG~~~~~~~~~~~~l~-------------~P~gl 296 (400)
T 3p5b_L 239 SLVT--ENIQWPNGITLDLLSGRLYWVDSK-------LHSISSIDVNGGNRKTILEDEKRLA-------------HPFSL 296 (400)
T ss_dssp EEEC--SSCSCEEEEEEETTTTEEEEEETT-------TTEEEEEETTSCCCEEEEECSSTTS-------------SEEEE
T ss_pred EEEE--CCCCceEEEEEEeCCCEEEEEECC-------CCEEEEEeCCCCccEEEEeCCCCCC-------------CCEEE
Confidence 3211 1112223 3333 6899998432 3579999987544333321111111 11357
Q ss_pred EEECCEEEEEeCCCCeEEEEeCCCC
Q 043540 336 AVVNNELYAADHEKEEVRKFDKGRK 360 (437)
Q Consensus 336 ~~~~~~ly~~gg~~~~v~~yd~~~~ 360 (437)
++.++.||+.+.....|+++|+.+.
T Consensus 297 ~v~~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 297 AVFEDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp EEETTEEEEEESSSCSEEEEESSSC
T ss_pred EEeCCEEEEecCCCCeEEEEEcCCC
Confidence 7789999999988889999997654
No 248
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=90.68 E-value=4.2 Score=36.92 Aligned_cols=148 Identities=13% Similarity=0.030 Sum_probs=72.0
Q ss_pred ceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEE----cCc-----------cCCceEEEEECCCCceecCC
Q 043540 149 KEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVF----GKE-----------VHGNAIYRYNLLTNTWSTGM 213 (437)
Q Consensus 149 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~----GG~-----------~~~~~v~~yd~~t~~W~~~~ 213 (437)
..+..||+. ++...+................+.-++.+|+. |.. .....+++||+.+++.+.+.
T Consensus 107 ~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~ 185 (305)
T 3dr2_A 107 RAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA 185 (305)
T ss_dssp TEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE
T ss_pred CEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe
Confidence 467788876 55554432111111111111223346788884 321 11357999999888877654
Q ss_pred CCCCCccceeeEEE-CC-EEEEEeccCCCCCCCceEEEEECCCCcEEe---cCCCCcCCcCeeEEEECCEEEEEecccCC
Q 043540 214 TMNTPRCLFGSASL-GE-IAILAGGCDPRGKLLKSAELYNSITGTWMP---ISSMHKARKMCSGVFMDGKFYVIGGIGEG 288 (437)
Q Consensus 214 ~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~---~~~~~~~r~~~~~~~~~g~lyv~GG~~~~ 288 (437)
.+ .. ..+.+.- ++ .+|+....... .....+++||...+.... .............+--+|+||+..+
T Consensus 186 ~~--~~-p~gl~~spdg~~lyv~~~~~~~-~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~---- 257 (305)
T 3dr2_A 186 DL--DH-PNGLAFSPDEQTLYVSQTPEQG-HGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSG---- 257 (305)
T ss_dssp EE--SS-EEEEEECTTSSEEEEEECCC----CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCS----
T ss_pred cC--CC-CcceEEcCCCCEEEEEecCCcC-CCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecC----
Confidence 11 11 1122322 33 58887532110 012578899887654211 1111111111112223688887642
Q ss_pred CCccCCeEEEEECCCCceEecC
Q 043540 289 SSAMLTDVEMYDLETGKWTQIT 310 (437)
Q Consensus 289 ~~~~~~~v~~yd~~~~~W~~~~ 310 (437)
..+.+||++...-..+.
T Consensus 258 -----~gv~~~~~~g~~~~~~~ 274 (305)
T 3dr2_A 258 -----TGVCVFDSDGQLLGHIP 274 (305)
T ss_dssp -----SEEEEECTTSCEEEEEE
T ss_pred -----CcEEEECCCCCEEEEEE
Confidence 23899999766555443
No 249
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=90.54 E-value=12 Score=38.43 Aligned_cols=147 Identities=17% Similarity=0.172 Sum_probs=72.0
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCC-CCCCccceeeEEE--C--CEEEEEeccCCCCCCCceEEEEECCCCcEE
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMT-MNTPRCLFGSASL--G--EIAILAGGCDPRGKLLKSAELYNSITGTWM 258 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~-~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~ 258 (437)
++..++.|+. ...+.+||.....-..+.. ....+....++.+ + ...++.|+.+ ..+.+||..+.+-.
T Consensus 483 ~~~~l~s~s~--D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------~~v~vwd~~~~~~~ 554 (694)
T 3dm0_A 483 DNRQIVSASR--DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWD------KTVKVWNLSNCKLR 554 (694)
T ss_dssp TSSCEEEEET--TSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETT------SCEEEEETTTCCEE
T ss_pred CCCEEEEEeC--CCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCC------CeEEEEECCCCcEE
Confidence 3444444433 2457778865443222211 1111222223333 2 2456666654 46788998876543
Q ss_pred ecCCCCcCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEE
Q 043540 259 PISSMHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLA 336 (437)
Q Consensus 259 ~~~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (437)
.. +.........+.+ ++++++.|+.+ ..+..||+.+++-. ..+...... ..++
T Consensus 555 ~~--~~~h~~~v~~v~~spdg~~l~sg~~D-------g~i~iwd~~~~~~~--~~~~~~~~v--------------~~~~ 609 (694)
T 3dm0_A 555 ST--LAGHTGYVSTVAVSPDGSLCASGGKD-------GVVLLWDLAEGKKL--YSLEANSVI--------------HALC 609 (694)
T ss_dssp EE--ECCCSSCEEEEEECTTSSEEEEEETT-------SBCEEEETTTTEEE--ECCBCSSCE--------------EEEE
T ss_pred EE--EcCCCCCEEEEEEeCCCCEEEEEeCC-------CeEEEEECCCCceE--EEecCCCcE--------------EEEE
Confidence 21 1111222233333 67888888765 34788998876532 121111101 2233
Q ss_pred EECCEEEEEeCCCCeEEEEeCCCCcEE
Q 043540 337 VVNNELYAADHEKEEVRKFDKGRKLWR 363 (437)
Q Consensus 337 ~~~~~ly~~gg~~~~v~~yd~~~~~W~ 363 (437)
...+..+++.+....|.+||..+++-.
T Consensus 610 ~sp~~~~l~~~~~~~i~iwd~~~~~~~ 636 (694)
T 3dm0_A 610 FSPNRYWLCAATEHGIKIWDLESKSIV 636 (694)
T ss_dssp ECSSSSEEEEEETTEEEEEETTTTEEE
T ss_pred EcCCCcEEEEEcCCCEEEEECCCCCCh
Confidence 333333344444566999999887644
No 250
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=90.51 E-value=2.4 Score=36.30 Aligned_cols=147 Identities=14% Similarity=0.084 Sum_probs=75.2
Q ss_pred eeEEECCEEEEEeccCCCCCCCceEEEEECCC---CcEEec----CCCCcCCcCeeEEE--ECCEEEEEecccCCCCccC
Q 043540 223 GSASLGEIAILAGGCDPRGKLLKSAELYNSIT---GTWMPI----SSMHKARKMCSGVF--MDGKFYVIGGIGEGSSAML 293 (437)
Q Consensus 223 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t---~~W~~~----~~~~~~r~~~~~~~--~~g~lyv~GG~~~~~~~~~ 293 (437)
+++.+++++|++-| ..+|+++... +-=+.+ +.+|. ..-+++ .+|++|++-|..
T Consensus 10 A~~~~~g~~~fFkg--------~~~w~~~~~~~~~gyP~~I~~~w~glP~---~iDAa~~~~~g~~yfFkg~~------- 71 (196)
T 3c7x_A 10 TVAMLRGEMFVFKE--------RWFWRVRNNQVMDGYPMPIGQFWRGLPA---SINTAYERKDGKFVFFKGDK------- 71 (196)
T ss_dssp EEEEETTEEEEEET--------TEEEEEETTEECTTCSEEHHHHSTTCCS---SCCEEEECTTSCEEEEETTE-------
T ss_pred EEEEcCCEEEEEEC--------CEEEEEECCccCCCCceEhhHhccCCCC---CccEEEEeCCCcEEEecCCE-------
Confidence 44567899999977 4566665321 100111 12332 122333 378999997754
Q ss_pred CeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE--CCEEEEEeCCCCeEEEEeCCCCcEE-----Ecc
Q 043540 294 TDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV--NNELYAADHEKEEVRKFDKGRKLWR-----TLG 366 (437)
Q Consensus 294 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ly~~gg~~~~v~~yd~~~~~W~-----~v~ 366 (437)
.++||..+ ..+.-|...... -..+|. ...-++... ++++|++- .+..++||..+++-. .+.
T Consensus 72 --yw~~~~~~----~~~gyPk~I~~~--~~glP~--~~IDAA~~~~~~g~~yfFk--G~~yw~yd~~~~~v~~gyPk~i~ 139 (196)
T 3c7x_A 72 --HWVFDEAS----LEPGYPKHIKEL--GRGLPT--DKIDAALFWMPNGKTYFFR--GNKYYRFNEELRAVDSEYPKNIK 139 (196)
T ss_dssp --EEEEETTE----ECTTCSEEGGGT--CBSCCS--SCCSEEEEETTTTEEEEEE--TTEEEEEETTTTEECTTCSEEGG
T ss_pred --EEEEeCCc----ccCCCCeEhhhc--CCCCCC--CcccEEEEEccCCEEEEEE--CCEEEEEeCCcccccCCCCccHH
Confidence 78887542 111111111000 000110 000233333 68999994 467899999775321 111
Q ss_pred ---CCCCcccCCCcccEEEEEeCC-EEEEEcCCCCCCCCeeEEEeeecCCCCC
Q 043540 367 ---RLPEQASSMNGWGLAFRACGD-QLIVIGGPRDSGGGIVELNGWVPDEGPP 415 (437)
Q Consensus 367 ---~lp~~~~~~~~~~~a~~~~~~-~l~v~GG~~~~~~~~~~~~~~~~d~~~~ 415 (437)
.+|.. .-+|+...++ ++|++-|.. .|+||..+.
T Consensus 140 ~~~gip~~------idaAf~~~~~~~~YfFkg~~----------y~r~d~~~~ 176 (196)
T 3c7x_A 140 VWEGIPES------PRGSFMGSDEVFTYFYKGNK----------YWKFNNQKL 176 (196)
T ss_dssp GSBTCCSS------CSEEEECTTSSEEEEEETTE----------EEEEETTTT
T ss_pred HCCCcCCC------cceeEEecCCCEEEEEECCE----------EEEEECCcc
Confidence 22221 2345544354 999997754 788987654
No 251
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=90.42 E-value=1.9 Score=43.36 Aligned_cols=182 Identities=10% Similarity=-0.092 Sum_probs=91.7
Q ss_pred eEEEEECCCCceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEE-EC
Q 043540 198 AIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVF-MD 276 (437)
Q Consensus 198 ~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~ 276 (437)
.+.+||..+++-+.+...+. ......-+++.+++++.+... ...++++|..+++++.+..-... ....+. -|
T Consensus 133 ~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~--~~~i~~~d~~~g~~~~l~~~~~~--~~~~~~SpD 205 (582)
T 3o4h_A 133 RVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGG--RVSLFTSNLSSGGLRVFDSGEGS--FSSASISPG 205 (582)
T ss_dssp CEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETT--EEEEEEEETTTCCCEEECCSSCE--EEEEEECTT
T ss_pred CceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCC--CeEEEEEcCCCCCceEeecCCCc--cccceECCC
Confidence 34478988887766653332 222333456555555543222 25699999999998876433211 122222 26
Q ss_pred CEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEe
Q 043540 277 GKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFD 356 (437)
Q Consensus 277 g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd 356 (437)
|+..+.+... ....++.+|+.+++...+......... +...........-+|++++.+.....+.+|+
T Consensus 206 G~~l~~~~~~-----~~~~i~~~d~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~ 273 (582)
T 3o4h_A 206 MKVTAGLETA-----REARLVTVDPRDGSVEDLELPSKDFSS-------YRPTAITWLGYLPDGRLAVVARREGRSAVFI 273 (582)
T ss_dssp SCEEEEEECS-----SCEEEEEECTTTCCEEECCCSCSHHHH-------HCCSEEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred CCEEEEccCC-----CeeEEEEEcCCCCcEEEccCCCcChhh-------hhhccccceeEcCCCcEEEEEEcCCcEEEEE
Confidence 7765543322 124689999999887733221111111 0000000001233667777766666788888
Q ss_pred CCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCC
Q 043540 357 KGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGP 414 (437)
Q Consensus 357 ~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~ 414 (437)
. ++... .+.... ...++ . ++++++.++.. . ....+|.+|..+
T Consensus 274 ~--g~~~~---~~~~~v----~~~~~-s-dg~~l~~~s~~---~--~p~~l~~~d~~~ 315 (582)
T 3o4h_A 274 D--GERVE---APQGNH----GRVVL-W-RGKLVTSHTSL---S--TPPRIVSLPSGE 315 (582)
T ss_dssp T--TEEEC---CCSSEE----EEEEE-E-TTEEEEEEEET---T--EEEEEEEETTCC
T ss_pred E--CCeec---cCCCce----EEEEe-c-CCEEEEEEcCC---C--CCCeEEEEcCCC
Confidence 8 44332 222111 12333 2 78877765432 1 123455556543
No 252
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=90.42 E-value=11 Score=34.78 Aligned_cols=204 Identities=14% Similarity=0.094 Sum_probs=108.8
Q ss_pred ccEEEEEecCceEEEeccCCCC--eee-CCCCCCccccccCCceeEEe---CCEEEEEcCccCCceEEEEECCCCc---e
Q 043540 139 EHWVYFSCKLKEWEAFDPIHHR--WMH-LPPMNASDCFMCADKESLAV---GTELLVFGKEVHGNAIYRYNLLTNT---W 209 (437)
Q Consensus 139 ~~~l~~~~~~~~~~~yDp~~~~--W~~-l~~~p~~~~~~~~~~~~~~~---~~~lyv~GG~~~~~~v~~yd~~t~~---W 209 (437)
+++|++.. ..++..+|+.... -.. ++.+..+ ..+.. ++.||+.- .....++++++.... +
T Consensus 4 ~p~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~--------~~ld~d~~~~~lyw~D--~~~~~I~r~~~~g~~~~~~ 72 (318)
T 3sov_A 4 APLLLYAN-RRDLRLVDATNGKENATIVVGGLEDA--------AAVDFVFSHGLIYWSD--VSEEAIKRTEFNKTESVQN 72 (318)
T ss_dssp CCEEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEE--------EEEEEEGGGTEEEEEE--TTTTEEEEEETTSSSCCCE
T ss_pred ccEEEEEc-cCeEEEEECCCCceEEEEEecCCCcc--------EEEEEEeCCCEEEEEE--CCCCcEEEEEccCCCceEE
Confidence 46666654 4667788877653 111 1111100 01222 57888874 234678889987652 1
Q ss_pred ecCCCCCCCccceeeEE--ECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE---CCEEEEEec
Q 043540 210 STGMTMNTPRCLFGSAS--LGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM---DGKFYVIGG 284 (437)
Q Consensus 210 ~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~---~g~lyv~GG 284 (437)
.....+..| .+.++ .++.||+.-.. ...++++++....-+.+.. .......++.+ +|.||+.--
T Consensus 73 ~~~~~l~~p---~glavd~~~g~ly~~d~~------~~~I~~~~~dG~~~~~l~~--~~~~~P~giavdp~~g~ly~td~ 141 (318)
T 3sov_A 73 VVVSGLLSP---DGLACDWLGEKLYWTDSE------TNRIEVSNLDGSLRKVLFW--QELDQPRAIALDPSSGFMYWTDW 141 (318)
T ss_dssp EEEECCSCC---CEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEEC--SSCSSEEEEEEEGGGTEEEEEEC
T ss_pred EEcCCCCCc---cEEEEEcCCCeEEEEECC------CCEEEEEECCCCcEEEEEe--CCCCCccEEEEeCCCCEEEEEec
Confidence 111122211 23444 37899998432 3678999987654333321 11122233333 589999741
Q ss_pred ccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE--CCEEEEEeCCCCeEEEEeCCCCcE
Q 043540 285 IGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV--NNELYAADHEKEEVRKFDKGRKLW 362 (437)
Q Consensus 285 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ly~~gg~~~~v~~yd~~~~~W 362 (437)
. ....++++++....=+.+..- ... .+.++++- +++||+.+.....|+++|.....=
T Consensus 142 ~------~~~~I~r~~~dG~~~~~~~~~--~l~-------------~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~ 200 (318)
T 3sov_A 142 G------EVPKIERAGMDGSSRFIIINS--EIY-------------WPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR 200 (318)
T ss_dssp S------SSCEEEEEETTSCSCEEEECS--SCS-------------CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred C------CCCEEEEEEcCCCCeEEEEEC--CCC-------------CccEEEEeccCCEEEEEECCCCEEEEEcCCCCce
Confidence 1 124688998875332222110 010 11345554 789999998889999999875443
Q ss_pred EEccC--CCCcccCCCcccEEEEEeCCEEEEEc
Q 043540 363 RTLGR--LPEQASSMNGWGLAFRACGDQLIVIG 393 (437)
Q Consensus 363 ~~v~~--lp~~~~~~~~~~~a~~~~~~~l~v~G 393 (437)
+.+.. +..+ +|+ ++.++.||+.-
T Consensus 201 ~~~~~~~~~~P------~gl--av~~~~lywtd 225 (318)
T 3sov_A 201 QAVVKGSLPHP------FAL--TLFEDILYWTD 225 (318)
T ss_dssp EEEECSCCSCE------EEE--EEETTEEEEEE
T ss_pred EEEecCCCCCc------eEE--EEeCCEEEEEe
Confidence 33332 2111 244 34678888873
No 253
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=90.41 E-value=8.1 Score=36.12 Aligned_cols=180 Identities=8% Similarity=0.010 Sum_probs=92.2
Q ss_pred ceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceee--EE
Q 043540 149 KEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGS--AS 226 (437)
Q Consensus 149 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~--~~ 226 (437)
..+..+|+.+.+-......... .......-++.+++.++ .+.+.+++..++................. ..
T Consensus 157 ~~i~iwd~~~~~~~~~~~~~~~-----V~~v~fspdg~~l~s~s---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs 228 (365)
T 4h5i_A 157 AIMRIIDPSDLTEKFEIETRGE-----VKDLHFSTDGKVVAYIT---GSSLEVISTVTGSCIARKTDFDKNWSLSKINFI 228 (365)
T ss_dssp CEEEEEETTTTEEEEEEECSSC-----CCEEEECTTSSEEEEEC---SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEE
T ss_pred CEEEEeECCCCcEEEEeCCCCc-----eEEEEEccCCceEEecc---ceeEEEEEeccCcceeeeecCCCCCCEEEEEEc
Confidence 4567778777654322111111 11111223566666653 34567788777665432221111111222 23
Q ss_pred ECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCC--CCcCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECC
Q 043540 227 LGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISS--MHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLE 302 (437)
Q Consensus 227 ~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~--~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~ 302 (437)
-++..++.++.++.. ...+..+|........... +........++.+ +|++.+.|+.+ ..+..||..
T Consensus 229 pdg~~l~~~s~d~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D-------~~V~iwd~~ 299 (365)
T 4h5i_A 229 ADDTVLIAASLKKGK--GIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASND-------NSIALVKLK 299 (365)
T ss_dssp ETTEEEEEEEESSSC--CEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETT-------SCEEEEETT
T ss_pred CCCCEEEEEecCCcc--eeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCC-------CEEEEEECC
Confidence 477888887766442 2456677776665543321 1111222233333 78888888875 358899998
Q ss_pred CCceEecCCCCCcccCCCCcccccccCCCCCEEEE-ECCEEEEEeCCCCeEEEEeCCC
Q 043540 303 TGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV-VNNELYAADHEKEEVRKFDKGR 359 (437)
Q Consensus 303 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~~~v~~yd~~~ 359 (437)
+.+-. ..+...... .+ ..++. -+|++++-|...+.|.+||...
T Consensus 300 ~~~~~--~~~~~gH~~---~V---------~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 300 DLSMS--KIFKQAHSF---AI---------TEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp TTEEE--EEETTSSSS---CE---------EEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred CCcEE--EEecCcccC---CE---------EEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 76432 111111111 00 11222 2788888887888999999753
No 254
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=90.39 E-value=8.1 Score=36.56 Aligned_cols=151 Identities=8% Similarity=-0.021 Sum_probs=77.8
Q ss_pred eeEEECCEEEEEeccCCCCCCCceEEEEECCCCcE--Eec----CCCCcCCcCeeEEEE--CCEEEEEecccCCCCccCC
Q 043540 223 GSASLGEIAILAGGCDPRGKLLKSAELYNSITGTW--MPI----SSMHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLT 294 (437)
Q Consensus 223 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W--~~~----~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~ 294 (437)
+++.+++++|++-| ..+|+++.....- ..+ +.+|. ..-++... +|++|++-|..
T Consensus 185 Av~~~~g~~~fFkg--------~~~Wr~~~~~~~~~p~~I~~~wpgLP~--~iDAa~~~~~~g~~~fFkg~~-------- 246 (365)
T 3ba0_A 185 AVTTVGNKIFFFKD--------RFFWLKVSERPKTSVNLISSLWPTLPS--GIEAAYEIEARNQVFLFKDDK-------- 246 (365)
T ss_dssp CEEEETTEEEEEET--------TEEEECCSSCCCCCEEEHHHHCSSCCS--SCCEEEEEGGGTEEEEEETTE--------
T ss_pred eEEEcCCeEEEEeC--------CEEEEEcCCCccCCccchhhhccCCCC--CccEEEEecCCCEEEEEeCCE--------
Confidence 44567999999976 3455555433210 111 22332 12233333 79999997754
Q ss_pred eEEEEECCCCc--e-EecCC--CCCcccCCCCcccccccCCCCCEEEEE--CCEEEEEeCCCCeEEEEeCCCCcEEEccC
Q 043540 295 DVEMYDLETGK--W-TQITD--MFPARIGSDGVSVISAAGEAPPLLAVV--NNELYAADHEKEEVRKFDKGRKLWRTLGR 367 (437)
Q Consensus 295 ~v~~yd~~~~~--W-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ly~~gg~~~~v~~yd~~~~~W~~v~~ 367 (437)
.++|+..+.. + ..|.. +|..... .-++... ++++|++- .+..|+||..+++-. ..
T Consensus 247 -yWr~~~~~~~~gyPk~I~~~GlP~~~~~-------------IDAA~~~~~~~~~yfFk--G~~yw~yd~~~~~v~--~g 308 (365)
T 3ba0_A 247 -YWLISNLRPEPNYPKSIHSFGFPNFVKK-------------IDAAVFNPRFYRTYFFV--DNQYWRYDERRQMMD--PG 308 (365)
T ss_dssp -EEECSTTSCTTTCSEETTTTTCCTTCCC-------------CCEEEEETTTTEEEEEE--TTEEEEEETTTTEEC--SS
T ss_pred -EEEEcCCcccCCCCceeeeccCCCCCCC-------------cCEEEEeCCCCEEEEEE--CCEEEEEeCCcceec--CC
Confidence 6777643211 0 11111 1111000 1233333 58999994 467999998775422 11
Q ss_pred CCCccc-----CCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCcee
Q 043540 368 LPEQAS-----SMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKL 419 (437)
Q Consensus 368 lp~~~~-----~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~ 419 (437)
-|.... .....-+|+...++++|+|-|.. .|+||..+.+-..
T Consensus 309 yPk~I~~~f~g~p~~iDaA~~~~~g~~YfFkg~~----------ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 309 YPKLITKNFQGIGPKIDAVFYSKNKYYYFFQGSN----------QFEYDFLLQRITK 355 (365)
T ss_dssp CCCCHHHHSTTCCSSCSEEEEETTTEEEEEETTE----------EEEEETTTTEEEE
T ss_pred CCcchhhcCCCCCCccceeeEecCCcEEEEeCCE----------EEEEECCccEEec
Confidence 111110 00112355544488999997743 7899877665433
No 255
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=90.37 E-value=7.8 Score=36.80 Aligned_cols=108 Identities=8% Similarity=0.021 Sum_probs=60.5
Q ss_pred CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCCc
Q 043540 228 GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGK 305 (437)
Q Consensus 228 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~ 305 (437)
++.+++.|+.+ ..+.+||..+.+-...-..+........+.+ ++++.+.|+.+ ..+..||+.+++
T Consensus 181 ~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-------g~i~iwd~~~~~ 247 (437)
T 3gre_A 181 EKSLLVALTNL------SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTR-------GIIDIWDIRFNV 247 (437)
T ss_dssp SCEEEEEEETT------SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETT-------SCEEEEETTTTE
T ss_pred CCCEEEEEeCC------CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCC-------CeEEEEEcCCcc
Confidence 46777777653 5789999988764322111111222333333 67788887765 348899998765
Q ss_pred eEecCCCCCcccCCCCcccccccCCCCCEEEE-----ECCEEEEEeCCCCeEEEEeCCCCcE
Q 043540 306 WTQITDMFPARIGSDGVSVISAAGEAPPLLAV-----VNNELYAADHEKEEVRKFDKGRKLW 362 (437)
Q Consensus 306 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ly~~gg~~~~v~~yd~~~~~W 362 (437)
....-.......- ..++. -++.+++.|+..+.|.+||..+.+-
T Consensus 248 ~~~~~~~~~~~~v--------------~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 295 (437)
T 3gre_A 248 LIRSWSFGDHAPI--------------THVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHC 295 (437)
T ss_dssp EEEEEBCTTCEEE--------------EEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEE
T ss_pred EEEEEecCCCCce--------------EEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcE
Confidence 4322111111000 01111 1355777777777899999987663
No 256
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=90.33 E-value=7.5 Score=34.73 Aligned_cols=95 Identities=15% Similarity=0.228 Sum_probs=56.6
Q ss_pred ceEEEEECCCCcEEecCCCCcCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCc
Q 043540 245 KSAELYNSITGTWMPISSMHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGV 322 (437)
Q Consensus 245 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~ 322 (437)
+.+.++|.++++-..+-.+........++.+ ++++.+.|+.+ ..+..||+++++-......... .
T Consensus 45 ~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~D-------g~v~iw~~~~~~~~~~~~~h~~--~---- 111 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS-------AEVQLWDVQQQKRLRNMTSHSA--R---- 111 (318)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT-------SEEEEEETTTTEEEEEEECCSS--C----
T ss_pred CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECC-------CcEEEeecCCceeEEEecCccc--e----
Confidence 5789999999876554333332223333333 67888888765 3588899988764322111111 1
Q ss_pred ccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCcE
Q 043540 323 SVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKLW 362 (437)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~W 362 (437)
......++.+.+.|.....+..++..+...
T Consensus 112 ----------~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~ 141 (318)
T 4ggc_A 112 ----------VGSLSWNSYILSSGSRSGHIHHHDVRVAEH 141 (318)
T ss_dssp ----------EEEEEEETTEEEEEETTSEEEEEETTSSSC
T ss_pred ----------EEEeecCCCEEEEEecCCceEeeecCCCce
Confidence 223445666777777777777777766543
No 257
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A
Probab=90.27 E-value=2.5 Score=37.18 Aligned_cols=148 Identities=7% Similarity=-0.001 Sum_probs=75.3
Q ss_pred eCCEEEEEcCccCCceEEEEEC---------------CCCceecCCCCCC-C-ccceeeEEECCEEEEEeccCCCCCCCc
Q 043540 183 VGTELLVFGKEVHGNAIYRYNL---------------LTNTWSTGMTMNT-P-RCLFGSASLGEIAILAGGCDPRGKLLK 245 (437)
Q Consensus 183 ~~~~lyv~GG~~~~~~v~~yd~---------------~t~~W~~~~~~~~-~-r~~~~~~~~~~~iyv~GG~~~~~~~~~ 245 (437)
.++++|+|-| +.+|.++. .+..|..++.... | ....+.-..++++|++-| +
T Consensus 14 ~~ge~yfFkg----~~~wr~~~~~~~~~~~~~~~P~~I~~~W~~Lp~~~f~p~~iDaaf~~~~g~~~fFKg--------~ 81 (227)
T 3lp9_A 14 KNNEAYFFIN----DKYVLLDYAPGSSRDKVLYGPTPVRDGFKSLNQTIFGSYGIDCSFDTENNEAFIFYE--------N 81 (227)
T ss_dssp STTEEEEEET----TEEEEEECCTTSSCCEEEEEEEEHHHHSGGGTTSHHHHHCCSEEEECSTTEEEEEET--------T
T ss_pred CCCeEEEEEC----CEEEEEeCCCCCccccccCCceEHhhcCCcCCcccCCCCCceEEEECCCCEEEEEeC--------C
Confidence 3689999954 23555544 2334666643211 1 111111136899999977 5
Q ss_pred eEEEEE--CCCCcEE------ec----CCCCcC--CcCeeEEEE---CCEEEEEecccCCCCccCCeEEEEECCCCceEe
Q 043540 246 SAELYN--SITGTWM------PI----SSMHKA--RKMCSGVFM---DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQ 308 (437)
Q Consensus 246 ~~~~yd--~~t~~W~------~~----~~~~~~--r~~~~~~~~---~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~ 308 (437)
..|+|+ +.+..-. .+ +.||.. -...-+++. ++++|++-|.. .++||..+++-.
T Consensus 82 ~~Wr~~~~~~~~~~~~~~gP~~I~~~w~gLp~~~~p~~IDAA~~~~~~~k~yfFkG~~---------yw~~d~~~~~~~- 151 (227)
T 3lp9_A 82 FCALIDYAPHSKKDKIILGPKKIADVFPFFEGTVFESGIDAAYRSTRGKEVYLFKGDQ---------YARIDYGSNSMV- 151 (227)
T ss_dssp EEEEEECCTTTCCCEEEEEEEEHHHHSGGGTTSTTTTCCSEEEECSSTTEEEEEETTE---------EEEEETTTTEES-
T ss_pred EEEEEeCCCCccccccccCceEHhhhcCCCCCccCCCcccEEEEECCCCEEEEEECCE---------EEEEeCCCcccc-
Confidence 678888 3211111 11 123210 112223333 68999998865 899998765321
Q ss_pred cCCCCCcccCCCCcccccccC-----CCCCEEEE--ECCEEEEEeCCCCeEEEEeCCCC
Q 043540 309 ITDMFPARIGSDGVSVISAAG-----EAPPLLAV--VNNELYAADHEKEEVRKFDKGRK 360 (437)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~--~~~~ly~~gg~~~~v~~yd~~~~ 360 (437)
+.-|..... ..|... .-.-++.. .++++|++- .+..|+||..++
T Consensus 152 -~gyPk~i~~-----g~p~~~~~g~p~~iDAA~~~~~~g~~YfFk--g~~Ywr~d~~~~ 202 (227)
T 3lp9_A 152 -NKEIKSISS-----GYPCFRNTIFESGADAAFASHKTNEVYFFK--DDHYARVKVTPX 202 (227)
T ss_dssp -SSSCEEHHH-----HCGGGTTSGGGGCCSEEEECSSTTEEEEEE--TTEEEEEECCSS
T ss_pred -CCCCeEHHH-----CCCCccccccCCCccEEEEcCCCceEEEEE--CCEEEEEECCcc
Confidence 111111000 001000 00123343 358999994 467999998876
No 258
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=90.15 E-value=7.9 Score=39.05 Aligned_cols=198 Identities=12% Similarity=0.062 Sum_probs=99.9
Q ss_pred ccEEEEEecCceEEEeccC--CCCe-eeCCCCCCccccccCCceeEE-----eCCEEEEEcCccCCceEEEEECCCCcee
Q 043540 139 EHWVYFSCKLKEWEAFDPI--HHRW-MHLPPMNASDCFMCADKESLA-----VGTELLVFGKEVHGNAIYRYNLLTNTWS 210 (437)
Q Consensus 139 ~~~l~~~~~~~~~~~yDp~--~~~W-~~l~~~p~~~~~~~~~~~~~~-----~~~~lyv~GG~~~~~~v~~yd~~t~~W~ 210 (437)
..++|+......+..||+. +.+- .+++.-..|+. ..+. -|..+|+.. ...+.+.++|..|.+=.
T Consensus 208 Gr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~------ia~s~~~~pDGk~l~v~n--~~~~~v~ViD~~t~~~~ 279 (567)
T 1qks_A 208 GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS------IETSKMEGWEDKYAIAGA--YWPPQYVIMDGETLEPK 279 (567)
T ss_dssp SCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE------EEECCSTTCTTTEEEEEE--EETTEEEEEETTTCCEE
T ss_pred CCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCce------eEEccccCCCCCEEEEEE--ccCCeEEEEECCCCcEE
Confidence 3566766666778899985 4322 12222111211 1122 134677654 23467888997665432
Q ss_pred c-CC--CC--------CCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE-CCE
Q 043540 211 T-GM--TM--------NTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM-DGK 278 (437)
Q Consensus 211 ~-~~--~~--------~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~g~ 278 (437)
. ++ .+ |.+|.....++.++..+++-- .....+++.|..+.....+..++..+..+.+.+- +|+
T Consensus 280 ~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~-----~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr 354 (567)
T 1qks_A 280 KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV-----KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHR 354 (567)
T ss_dssp EEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE-----TTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSC
T ss_pred EEEeccccccccccccCCCceEEEEEcCCCCEEEEEe-----cCCCeEEEEecCCCccceeeeeeccccccCceECCCCC
Confidence 2 11 11 122322222222333333311 1136778888877665555455555555554443 555
Q ss_pred EEEEecccCCCCccCCeEEEEECCCCceEec----CCCCCcccCCCCcccccccCCCCCEEEEE--CCEEEEEeC-CCCe
Q 043540 279 FYVIGGIGEGSSAMLTDVEMYDLETGKWTQI----TDMFPARIGSDGVSVISAAGEAPPLLAVV--NNELYAADH-EKEE 351 (437)
Q Consensus 279 lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ly~~gg-~~~~ 351 (437)
.+++.... .+.+.++|+.+++-... ...|.+..+ . .... .+.+|+... ..+.
T Consensus 355 ~~~va~~~------sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g--------------~-~~~~p~~g~v~~t~~~g~~~ 413 (567)
T 1qks_A 355 YFITAANA------RNKLVVIDTKEGKLVAIEDTGGQTPHPGRG--------------A-NFVHPTFGPVWATSHMGDDS 413 (567)
T ss_dssp EEEEEEGG------GTEEEEEETTTTEEEEEEECSSSSBCCTTC--------------E-EEEETTTEEEEEEEBSSSSE
T ss_pred EEEEEeCC------CCeEEEEECCCCcEEEEEeccCcCCCCccc--------------e-eeECCCCCcEEEeCCCCCCe
Confidence 44443222 35689999998864322 122222222 1 1223 367887764 2467
Q ss_pred EEEEeCCCCc-----EEEccCCCC
Q 043540 352 VRKFDKGRKL-----WRTLGRLPE 370 (437)
Q Consensus 352 v~~yd~~~~~-----W~~v~~lp~ 370 (437)
|.++|..+.. |+.+..++.
T Consensus 414 Vsvid~~~~~~~~~~~kvv~~i~~ 437 (567)
T 1qks_A 414 VALIGTDPEGHPDNAWKILDSFPA 437 (567)
T ss_dssp EEEEECCTTTCTTTBTSEEEEEEC
T ss_pred EEEecCCCCCCccccCEEEEEEec
Confidence 8899887633 887766554
No 259
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=90.13 E-value=8.6 Score=37.51 Aligned_cols=152 Identities=14% Similarity=0.062 Sum_probs=80.0
Q ss_pred eeEEeCCEEEEEcCccCCceEEEEECC---------CCceecCCCCCCCccceeeEE--ECCEEEEEeccCCCCCCCceE
Q 043540 179 ESLAVGTELLVFGKEVHGNAIYRYNLL---------TNTWSTGMTMNTPRCLFGSAS--LGEIAILAGGCDPRGKLLKSA 247 (437)
Q Consensus 179 ~~~~~~~~lyv~GG~~~~~~v~~yd~~---------t~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~ 247 (437)
++...++++|+|-|. .+|.++.. +..|..+|. . .-++.. .++++|++-| +.+
T Consensus 267 Ai~~~~ge~y~Fkg~----~~wr~~~~~~~~~p~~I~~~Wp~LP~---~--iDAa~~~~~~g~~~fFKg--------~~~ 329 (450)
T 1su3_A 267 AITTIRGEVMFFKDR----FYMRTNPFYPEVELNFISVFWPQLPN---G--LEAAYEFADRDEVRFFKG--------NKY 329 (450)
T ss_dssp EEEEETTEEEEEETT----EEEECCTTSSSCEEEEGGGTCTTSCS---S--CCEEEEEGGGTEEEEEET--------TEE
T ss_pred eEEecCCeEEEEeCC----EEEEEcCCCCcccceehhHhccCCCC---C--eeEEEEEcCCCeEEEEeC--------CEE
Confidence 456689999999652 34555433 334444432 1 112222 2689999976 456
Q ss_pred EEEECCCC--cE-EecC---CCCcC-CcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccC
Q 043540 248 ELYNSITG--TW-MPIS---SMHKA-RKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIG 318 (437)
Q Consensus 248 ~~yd~~t~--~W-~~~~---~~~~~-r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~ 318 (437)
|+|+..+- .+ +.+. .+|.. ..--+++.. ++++|++-|.. .++||..+++-. +.-|.....
T Consensus 330 W~~~~~~~~~gyP~~i~~~~g~P~~~~~IDAA~~~~~~~k~yfFkG~~---------yw~yd~~~~~~~--~gYPk~I~~ 398 (450)
T 1su3_A 330 WAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVANK---------YWRYDEYKRSMD--PGYPKMIAH 398 (450)
T ss_dssp EEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEETTE---------EEEEETTTTEEC--SSCSEEHHH
T ss_pred EEecCCcccCCCceeeehhhcCCCCCCccceEEEEcCCCeEEEEeCCE---------EEEEeCCCcccc--CCCCcchhh
Confidence 77774321 00 1111 12211 112233333 69999997754 899998764322 111111100
Q ss_pred CCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCcEEEc
Q 043540 319 SDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKLWRTL 365 (437)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~W~~v 365 (437)
.-..+| .-.-+++..+|++|++- .+..|+||..+++=..+
T Consensus 399 --~fpgip---~~iDAA~~~~g~~YFFk--g~~ywr~d~~~~~v~~~ 438 (450)
T 1su3_A 399 --DFPGIG---HKVDAVFMKDGFFYFFH--GTRQYKFDPKTKRILTL 438 (450)
T ss_dssp --HSTTSC---SCCSEEEEETTEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred --cCCCCC---CCccEEEEcCCeEEEEe--CCEEEEEECCcceEecc
Confidence 000000 01134556789999994 46789999988765543
No 260
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=89.88 E-value=12 Score=34.47 Aligned_cols=146 Identities=14% Similarity=0.027 Sum_probs=85.3
Q ss_pred eCCEEEEEcCccCCceEEEEECCCCceecC--CCCCCCccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEE
Q 043540 183 VGTELLVFGKEVHGNAIYRYNLLTNTWSTG--MTMNTPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWM 258 (437)
Q Consensus 183 ~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~--~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~ 258 (437)
.++.||+.-. ..+.++++++....-+.+ ..+..| .+.++- ++.||+.--. ....++++++....=+
T Consensus 89 ~~g~ly~~d~--~~~~I~~~~~dG~~~~~l~~~~~~~P---~giavdp~~g~ly~td~~-----~~~~I~r~~~dG~~~~ 158 (318)
T 3sov_A 89 LGEKLYWTDS--ETNRIEVSNLDGSLRKVLFWQELDQP---RAIALDPSSGFMYWTDWG-----EVPKIERAGMDGSSRF 158 (318)
T ss_dssp TTTEEEEEET--TTTEEEEEETTSCSCEEEECSSCSSE---EEEEEEGGGTEEEEEECS-----SSCEEEEEETTSCSCE
T ss_pred CCCeEEEEEC--CCCEEEEEECCCCcEEEEEeCCCCCc---cEEEEeCCCCEEEEEecC-----CCCEEEEEEcCCCCeE
Confidence 4788998742 235788999865433333 223222 233443 6899987411 1367899998753322
Q ss_pred ecCCCCcCCcC-eeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEE
Q 043540 259 PISSMHKARKM-CSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLL 335 (437)
Q Consensus 259 ~~~~~~~~r~~-~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (437)
.+..- .... .+.++- +++||+.-.. ...|+++|+....-+.+..- .. ..|.++
T Consensus 159 ~~~~~--~l~~Pnglavd~~~~~lY~aD~~-------~~~I~~~d~dG~~~~~~~~~--~~-------------~~P~gl 214 (318)
T 3sov_A 159 IIINS--EIYWPNGLTLDYEEQKLYWADAK-------LNFIHKSNLDGTNRQAVVKG--SL-------------PHPFAL 214 (318)
T ss_dssp EEECS--SCSCEEEEEEETTTTEEEEEETT-------TTEEEEEETTSCSCEEEECS--CC-------------SCEEEE
T ss_pred EEEEC--CCCCccEEEEeccCCEEEEEECC-------CCEEEEEcCCCCceEEEecC--CC-------------CCceEE
Confidence 22111 1112 233333 6899998432 35799999875433333210 00 112457
Q ss_pred EEECCEEEEEeCCCCeEEEEeCCCCcE
Q 043540 336 AVVNNELYAADHEKEEVRKFDKGRKLW 362 (437)
Q Consensus 336 ~~~~~~ly~~gg~~~~v~~yd~~~~~W 362 (437)
++.++.||+.......|.++|+.+.+-
T Consensus 215 av~~~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 215 TLFEDILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp EEETTEEEEEETTTTEEEEEETTTCCS
T ss_pred EEeCCEEEEEecCCCeEEEEECCCCCc
Confidence 788999999988888999999976543
No 261
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=89.83 E-value=4.9 Score=36.02 Aligned_cols=89 Identities=11% Similarity=0.150 Sum_probs=49.1
Q ss_pred EEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCC
Q 043540 187 LLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMH 264 (437)
Q Consensus 187 lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~ 264 (437)
++..| ..+.|.++|..|++-...-.+........++.+ +++.++.|+.+ ..+.++|.++++-... +.
T Consensus 38 ~lAvg---~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~D------g~v~iw~~~~~~~~~~--~~ 106 (318)
T 4ggc_A 38 VLAVA---LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS------AEVQLWDVQQQKRLRN--MT 106 (318)
T ss_dssp EEEEE---ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEE--EE
T ss_pred EEEEE---eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECC------CcEEEeecCCceeEEE--ec
Confidence 45555 245789999998876554333222222223333 56777777754 5688899988764322 22
Q ss_pred cCCcCeeEEEECCEEEEEeccc
Q 043540 265 KARKMCSGVFMDGKFYVIGGIG 286 (437)
Q Consensus 265 ~~r~~~~~~~~~g~lyv~GG~~ 286 (437)
...........++.+.+.|+..
T Consensus 107 ~h~~~~~~~~~~~~~l~s~~~~ 128 (318)
T 4ggc_A 107 SHSARVGSLSWNSYILSSGSRS 128 (318)
T ss_dssp CCSSCEEEEEEETTEEEEEETT
T ss_pred CccceEEEeecCCCEEEEEecC
Confidence 2222333444556666666544
No 262
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=89.77 E-value=0.15 Score=48.64 Aligned_cols=142 Identities=20% Similarity=0.168 Sum_probs=58.8
Q ss_pred EEeCCEEEEEcCccCCceEEEEECCCCc--eecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCC--c
Q 043540 181 LAVGTELLVFGKEVHGNAIYRYNLLTNT--WSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITG--T 256 (437)
Q Consensus 181 ~~~~~~lyv~GG~~~~~~v~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~ 256 (437)
++.++.||+.+. ...++.+|..|++ |+.-. . ......++.++.+|+.++.+ ..+..+|.+++ .
T Consensus 6 ~v~~~~v~~gs~---dg~v~a~d~~tG~~~W~~~~--~--~~~s~p~~~~g~~~v~~s~d------g~l~a~d~~tG~~~ 72 (369)
T 2hz6_A 6 TLPETLLFVSTL---DGSLHAVSKRTGSIKWTLKE--D--PVLQVPTHVEEPAFLPDPND------GSLYTLGSKNNEGL 72 (369)
T ss_dssp --CTTEEEEEET---TSEEEEEETTTCCEEEEEEC--C--CSCCCC-----CCEEECTTT------CCEEEC-----CCS
T ss_pred eeeCCEEEEEcC---CCEEEEEECCCCCEEEEecC--C--CceecceEcCCCEEEEeCCC------CEEEEEECCCCcee
Confidence 445677776542 3468999988764 66432 1 11122344567788876433 45788998765 4
Q ss_pred EEecCCCCcCCcCeeEEE-ECCEEEEEecccCCCCccCCeEEEEECCCCc--eEecCCCCCcccCCCCcccccccCCCCC
Q 043540 257 WMPISSMHKARKMCSGVF-MDGKFYVIGGIGEGSSAMLTDVEMYDLETGK--WTQITDMFPARIGSDGVSVISAAGEAPP 333 (437)
Q Consensus 257 W~~~~~~~~~r~~~~~~~-~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (437)
|+.-...+... ..+.++ .++.+|+ |+.+ ..+..+|+++++ |+.-..- .. .
T Consensus 73 w~~~~~~~~~~-~~sp~~~~~~~v~~-g~~d-------g~v~a~D~~tG~~~w~~~~~~--~~-~--------------- 125 (369)
T 2hz6_A 73 TKLPFTIPELV-QASPCRSSDGILYM-GKKQ-------DIWYVIDLLTGEKQQTLSSAF--AD-S--------------- 125 (369)
T ss_dssp EECSCCHHHHH-TTCSCC-----CCC-CEEE-------EEEEEECCC---------------------------------
T ss_pred eeeeccCcccc-ccCceEecCCEEEE-EeCC-------CEEEEEECCCCcEEEEecCCC--cc-c---------------
Confidence 76432222111 111122 4566664 3222 258889988764 6533211 00 0
Q ss_pred EEEEECCEEEEEeCCCCeEEEEeCCCCc--EEE
Q 043540 334 LLAVVNNELYAADHEKEEVRKFDKGRKL--WRT 364 (437)
Q Consensus 334 ~~~~~~~~ly~~gg~~~~v~~yd~~~~~--W~~ 364 (437)
.+-.++.||+. .....++.||+++.+ |+.
T Consensus 126 -~~p~~~~v~~~-~~dg~v~a~d~~tG~~~W~~ 156 (369)
T 2hz6_A 126 -LSPSTSLLYLG-RTEYTITMYDTKTRELRWNA 156 (369)
T ss_dssp --------EEEE-EEEEEEECCCSSSSSCCCEE
T ss_pred -ccccCCEEEEE-ecCCEEEEEECCCCCEEEeE
Confidence 11145555554 334568888887654 764
No 263
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=89.53 E-value=6 Score=33.76 Aligned_cols=145 Identities=12% Similarity=0.042 Sum_probs=77.6
Q ss_pred eeEEECCEEEEEeccCCCCCCCceEEEEECCCC--cEE--ec----CCCCcCCcCeeEEE-E--CCEEEEEecccCCCCc
Q 043540 223 GSASLGEIAILAGGCDPRGKLLKSAELYNSITG--TWM--PI----SSMHKARKMCSGVF-M--DGKFYVIGGIGEGSSA 291 (437)
Q Consensus 223 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~--~~----~~~~~~r~~~~~~~-~--~g~lyv~GG~~~~~~~ 291 (437)
+++.+++++|++-| ...|+++.... ... .+ +.+|. ..-|++ . ++++|++-|..
T Consensus 11 Ai~~~~g~~yfFkg--------~~~Wr~~~~~~~~~~~p~~Is~~w~glP~---~IDAa~~~~~~~~~yfFkG~~----- 74 (195)
T 1itv_A 11 AIAEIGNQLYLFKD--------GKYWRFSEGRGSRPQGPFLIADKWPALPR---KLDSVFEEPLSKKLFFFSGRQ----- 74 (195)
T ss_dssp EEEEETTEEEEEET--------TEEEEECCSSSCCCEEEEEHHHHCTTSCS---SCSEEEECTTTCCEEEEETTE-----
T ss_pred EEEEeCCEEEEEEC--------CEEEEEECCccccCCCcEEhhhccCCCCC---CccEEEEECCCCeEEEEeCCE-----
Confidence 45567999999977 55677776542 221 11 23443 222333 2 68999998754
Q ss_pred cCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEE-ECCEEEEEeCCCCeEEEEeCCCCcEE-----Ec
Q 043540 292 MLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV-VNNELYAADHEKEEVRKFDKGRKLWR-----TL 365 (437)
Q Consensus 292 ~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~~~v~~yd~~~~~W~-----~v 365 (437)
.++|+..+ -.. |..... ..+|..-...-+++. .++++|++- .+..++||..+++=. .+
T Consensus 75 ----yw~~~~~~--~~~----Pk~i~~----~G~p~~~~~iDAA~~~~~g~~yfFk--g~~ywr~d~~~~~~~~gyPr~i 138 (195)
T 1itv_A 75 ----VWVYTGAS--VLG----PRRLDK----LGLGADVAQVTGALRSGRGKMLLFS--GRRLWRFDVKAQMVDPRSASEV 138 (195)
T ss_dssp ----EEEEETTE--EEE----EEEGGG----GTCCTTCCCCCEEEECSTTEEEEEE--TTEEEEEETTTTEECGGGCEEH
T ss_pred ----EEEEcCCc--cCC----CEEeee----cccCCCccceeEEEEcCCCeEEEEe--CCEEEEEeCCcccccCCCccCh
Confidence 77887542 111 111100 001100000012222 368999994 467999999875421 11
Q ss_pred ----cCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCCCCC
Q 043540 366 ----GRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEGPPH 416 (437)
Q Consensus 366 ----~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~ 416 (437)
..+|.. ..+|+ ..++.+|++-|.. .|+||..+.+
T Consensus 139 ~~~w~Gvp~~------idaa~-~~~g~~Yffkg~~----------y~~~~~~~~~ 176 (195)
T 1itv_A 139 DRMFPGVPLD------THDVF-QFREKAYFCQDRF----------YWRVSSRSEL 176 (195)
T ss_dssp HHHSTTSCSS------CSEEE-EETTEEEEEETTE----------EEEEECCTTC
T ss_pred hhcCCCCCCC------CCEEE-EeCCeEEEEeCCE----------EEEEECCccE
Confidence 122222 13444 4469999998753 7888876554
No 264
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=89.23 E-value=22 Score=36.58 Aligned_cols=149 Identities=13% Similarity=0.081 Sum_probs=77.5
Q ss_pred ceEEEEECCCCcee--cCCCCC-CCccceeeE-EECCEEEEEeccCCCCCCCceEEEEECCC------C--cEEecCCCC
Q 043540 197 NAIYRYNLLTNTWS--TGMTMN-TPRCLFGSA-SLGEIAILAGGCDPRGKLLKSAELYNSIT------G--TWMPISSMH 264 (437)
Q Consensus 197 ~~v~~yd~~t~~W~--~~~~~~-~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~t------~--~W~~~~~~~ 264 (437)
..+++++..+++.. .+-..+ .+....... +-+++.+++....... ..+.++++|..+ . .++.+..-.
T Consensus 208 ~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~ 286 (710)
T 2xdw_A 208 QKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCD-PVNRLWYCDLQQESNGITGILKWVKLIDNF 286 (710)
T ss_dssp CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSS-SCCEEEEEEGGGSSSSSCSSCCCEEEECSS
T ss_pred CEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCC-CccEEEEEECcccccccCCccceEEeeCCC
Confidence 45899999887643 111111 122222222 2244433333322111 147889999876 4 577665332
Q ss_pred cCCcCeeEE-EECCEEEEEecccCCCCccCCeEEEEECCCC---ceEecCCCCCcccCCCCcccccccCCCCCEEEEE-C
Q 043540 265 KARKMCSGV-FMDGKFYVIGGIGEGSSAMLTDVEMYDLETG---KWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV-N 339 (437)
Q Consensus 265 ~~r~~~~~~-~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~---~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 339 (437)
... ...+ .-++.||+.+... .....++.+|+.+. .|+.+-.-.....- ..+... +
T Consensus 287 ~~~--~~~~s~dg~~l~~~s~~~----~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~--------------~~~~~~~~ 346 (710)
T 2xdw_A 287 EGE--YDYVTNEGTVFTFKTNRH----SPNYRLINIDFTDPEESKWKVLVPEHEKDVL--------------EWVACVRS 346 (710)
T ss_dssp SSC--EEEEEEETTEEEEEECTT----CTTCEEEEEETTSCCGGGCEEEECCCSSCEE--------------EEEEEETT
T ss_pred CcE--EEEEeccCCEEEEEECCC----CCCCEEEEEeCCCCCcccceeccCCCCCCeE--------------EEEEEEcC
Confidence 221 2222 2367788876532 22456899999876 48776432221111 124445 6
Q ss_pred CEEEEEeCC--CCeEEEEeCCCCc-EEEcc
Q 043540 340 NELYAADHE--KEEVRKFDKGRKL-WRTLG 366 (437)
Q Consensus 340 ~~ly~~gg~--~~~v~~yd~~~~~-W~~v~ 366 (437)
+.|++.... ...|+++|+.+++ ...+.
T Consensus 347 ~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~ 376 (710)
T 2xdw_A 347 NFLVLCYLHDVKNTLQLHDLATGALLKIFP 376 (710)
T ss_dssp TEEEEEEEETTEEEEEEEETTTCCEEEEEC
T ss_pred CEEEEEEEECCEEEEEEEECCCCCEEEecC
Confidence 777776532 3468999986554 44543
No 265
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=89.06 E-value=11 Score=34.13 Aligned_cols=143 Identities=13% Similarity=0.122 Sum_probs=72.2
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecC
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPIS 261 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 261 (437)
++..++.|+. ...+.+||..+++-... +........++.+ ++.+++.|+.+ ..+.+||.....-..+.
T Consensus 76 dg~~l~s~s~--D~~v~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~s~D------~~i~vwd~~~~~~~~~~ 145 (319)
T 3frx_A 76 DGAYALSASW--DKTLRLWDVATGETYQR--FVGHKSDVMSVDIDKKASMIISGSRD------KTIKVWTIKGQCLATLL 145 (319)
T ss_dssp TSSEEEEEET--TSEEEEEETTTTEEEEE--EECCSSCEEEEEECTTSCEEEEEETT------SCEEEEETTSCEEEEEC
T ss_pred CCCEEEEEeC--CCEEEEEECCCCCeeEE--EccCCCcEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCeEEEEe
Confidence 4555555543 35688899988753211 1111111122222 45677777754 45778887654333222
Q ss_pred CCCcCCcCeeEEEE--------CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCC
Q 043540 262 SMHKARKMCSGVFM--------DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPP 333 (437)
Q Consensus 262 ~~~~~r~~~~~~~~--------~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (437)
.. ......+.+ ++.+++.|+.+ ..+..||+.+.+-... + .+|...+ .
T Consensus 146 ~h---~~~v~~~~~~~~~~~~~~~~~l~s~~~d-------~~i~~wd~~~~~~~~~--~----~~h~~~v---------~ 200 (319)
T 3frx_A 146 GH---NDWVSQVRVVPNEKADDDSVTIISAGND-------KMVKAWNLNQFQIEAD--F----IGHNSNI---------N 200 (319)
T ss_dssp CC---SSCEEEEEECCC------CCEEEEEETT-------SCEEEEETTTTEEEEE--E----CCCCSCE---------E
T ss_pred cc---CCcEEEEEEccCCCCCCCccEEEEEeCC-------CEEEEEECCcchhhee--e----cCCCCcE---------E
Confidence 11 111112211 23355666654 3488899876543221 1 1110000 1
Q ss_pred EEEE-ECCEEEEEeCCCCeEEEEeCCCCc
Q 043540 334 LLAV-VNNELYAADHEKEEVRKFDKGRKL 361 (437)
Q Consensus 334 ~~~~-~~~~ly~~gg~~~~v~~yd~~~~~ 361 (437)
.++. -++++++.|+..+.|.+||..+.+
T Consensus 201 ~~~~sp~g~~l~s~~~dg~i~iwd~~~~~ 229 (319)
T 3frx_A 201 TLTASPDGTLIASAGKDGEIMLWNLAAKK 229 (319)
T ss_dssp EEEECTTSSEEEEEETTCEEEEEETTTTE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 1222 267778888888899999998865
No 266
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=88.99 E-value=11 Score=34.35 Aligned_cols=101 Identities=8% Similarity=-0.012 Sum_probs=53.9
Q ss_pred ceEEEEECCCCce-ecCCCCCCCccceeeEEE-CCEEEEEeccCCCCC--C-CceEEEEECCCCcEEecCCCCcCCcCee
Q 043540 197 NAIYRYNLLTNTW-STGMTMNTPRCLFGSASL-GEIAILAGGCDPRGK--L-LKSAELYNSITGTWMPISSMHKARKMCS 271 (437)
Q Consensus 197 ~~v~~yd~~t~~W-~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~--~-~~~~~~yd~~t~~W~~~~~~~~~r~~~~ 271 (437)
..++++|+.+++. +.+.. + .....+.. ++ +++.+..+.... . ...++.+| +++++.+..- ....
T Consensus 152 ~~l~~~d~~~~~~~~~l~~-~---~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~----~~~~ 220 (347)
T 2gop_A 152 TTFWIFDTESEEVIEEFEK-P---RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK----VSFY 220 (347)
T ss_dssp EEEEEEETTTTEEEEEEEE-E---TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE----ESEE
T ss_pred ceEEEEECCCCeEEeeecC-C---CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEeccC----ccee
Confidence 5789999998887 65544 2 22222223 44 555554332111 2 45788888 7777766432 2222
Q ss_pred EEEECCEEEEEeccc-CCCCccCCeEEEEECCCCceEecC
Q 043540 272 GVFMDGKFYVIGGIG-EGSSAMLTDVEMYDLETGKWTQIT 310 (437)
Q Consensus 272 ~~~~~g~lyv~GG~~-~~~~~~~~~v~~yd~~~~~W~~~~ 310 (437)
...-+|+.+++.+.. .........++.+| ++++..+.
T Consensus 221 ~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~ 258 (347)
T 2gop_A 221 AVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGIL 258 (347)
T ss_dssp EEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESS
T ss_pred eECCCCCEEEEEEccccCCccccceEEEEC--CCceEecc
Confidence 335577644443322 11112345788898 66666654
No 267
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=88.84 E-value=15 Score=34.18 Aligned_cols=229 Identities=13% Similarity=0.084 Sum_probs=110.2
Q ss_pred cEEEEEe-cCceEEEeccCCCCeeeCCCCCC-----ccccccCCceeEEe-----CCEEEEEcC---------c--cCCc
Q 043540 140 HWVYFSC-KLKEWEAFDPIHHRWMHLPPMNA-----SDCFMCADKESLAV-----GTELLVFGK---------E--VHGN 197 (437)
Q Consensus 140 ~~l~~~~-~~~~~~~yDp~~~~W~~l~~~p~-----~~~~~~~~~~~~~~-----~~~lyv~GG---------~--~~~~ 197 (437)
..+|++. ....+..+||..+.=..+ ..+. ....+. ..+.+ .+.|++... . ...+
T Consensus 25 g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~---sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~ 100 (334)
T 2p9w_A 25 QVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQM---SGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGAS 100 (334)
T ss_dssp TEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEE---EEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCC
T ss_pred CEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCccee---eEEEEeccCCCCcEEEEEcccccccccccccCCCC
Confidence 4456654 457789999986654343 2322 111111 11233 467887521 0 1246
Q ss_pred eEEEEECC---CCc--eec-CCCCCC------C-cc-ceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCc---EE
Q 043540 198 AIYRYNLL---TNT--WST-GMTMNT------P-RC-LFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGT---WM 258 (437)
Q Consensus 198 ~v~~yd~~---t~~--W~~-~~~~~~------~-r~-~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~---W~ 258 (437)
.+.+||+. |++ |.. ++.... + +. ...-.++ ++.+||.+... ...++++|+.... |-
T Consensus 101 ~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~-----~~~I~rV~pdG~~~~~~~ 175 (334)
T 2p9w_A 101 SFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALG-----MPAIARVSADGKTVSTFA 175 (334)
T ss_dssp EEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEES-----SCEEEEECTTSCCEEEEE
T ss_pred EEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCC-----CCeEEEEeCCCCEEeeee
Confidence 79999987 543 332 111110 0 11 1222233 57999986542 1568899987543 54
Q ss_pred ecCCCCcCCcCe-eEEEE-CC-EEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCE-
Q 043540 259 PISSMHKARKMC-SGVFM-DG-KFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPL- 334 (437)
Q Consensus 259 ~~~~~~~~r~~~-~~~~~-~g-~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 334 (437)
.-.+....+.+. ++++. +| .|++..+ . ..+.+||+.+....+ ++..+.+.......+ -.
T Consensus 176 ~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~-------g~L~~fD~~~pv~~~---v~~~~~G~~~~~~~~------dgi 238 (334)
T 2p9w_A 176 WESGNGGQRPGYSGITFDPHSNKLIAFGG-P-------RALTAFDVSKPYAWP---EPVKINGDFGTLSGT------EKI 238 (334)
T ss_dssp ECCCCSSSCCSCSEEEEETTTTEEEEESS-S-------SSEEEEECSSSSCCC---EECEESSCCCCCTTE------EEE
T ss_pred ecCCCcccccCcceEEEeCCCCEEEEEcC-C-------CeEEEEcCCCCccee---ecccccCCcccccCc------ccc
Confidence 322222334444 44555 45 4555544 3 358999988422101 111110100000000 12
Q ss_pred -EEEECCEEEEEeCCCCeEEEEeCCCCcEEEcc---CCCCcccCCCcccEEEEE---eCCEEEEEcCCC
Q 043540 335 -LAVVNNELYAADHEKEEVRKFDKGRKLWRTLG---RLPEQASSMNGWGLAFRA---CGDQLIVIGGPR 396 (437)
Q Consensus 335 -~~~~~~~ly~~gg~~~~v~~yd~~~~~W~~v~---~lp~~~~~~~~~~~a~~~---~~~~l~v~GG~~ 396 (437)
..-.+|++.++....+.++.+-...+ |+... ..|.... ..++..+.++ .+++||++.+.-
T Consensus 239 lp~~~~G~vllV~~~~~~~~~l~S~Dg-W~sa~~~g~~~~~~~-~~g~tt~t~~~~~~~~~iYvv~~~f 305 (334)
T 2p9w_A 239 VTVPVGNESVLVGARAPYAISFRSWDN-WKSANIKKTKRSELQ-NSGFTAVADYYQGSEQGLYAVSAFF 305 (334)
T ss_dssp EEEEETTEEEEEEEETTEEEEEECSST-TSEEEEEEEECGGGG-SSCEEEEEEEEETTEEEEEEEECCG
T ss_pred cccccCCEEEEEEcCCCCEEEEECCCC-cceeEEeeeecCccc-cCceeEEEEeccccCCeEEEEeeec
Confidence 22369998666433344455444444 87653 3333211 2333333332 678999997653
No 268
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=88.78 E-value=13 Score=35.40 Aligned_cols=126 Identities=11% Similarity=0.037 Sum_probs=71.0
Q ss_pred Ccee--cCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECC-----CCc-EEecCCCC-cCCcCeeEEEECC
Q 043540 207 NTWS--TGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSI-----TGT-WMPISSMH-KARKMCSGVFMDG 277 (437)
Q Consensus 207 ~~W~--~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~-----t~~-W~~~~~~~-~~r~~~~~~~~~g 277 (437)
+.|+ +++..+..-..|+-+.+++.-|++|=.++.-....--..|-+. ... =+.+++-- ..-.-.+.-.++|
T Consensus 270 spW~~t~L~~i~~vTe~HSFa~i~~~~fa~GyHnGDv~PRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyYdg 349 (670)
T 3ju4_A 270 SPWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSEYEPDASEPCIKYYDG 349 (670)
T ss_dssp SCCEEEECCSCTTCSEEEEEEECSSSCEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECCGGGCTTEEEEEEEEETT
T ss_pred CCceecccccccceeeeeeeeEecCCceEEEeccCCCCcceeeEEEecccccCCcceeeeechhhhccccccchhhhhCC
Confidence 4454 3445565566788899998888887655543222222333221 111 22333221 1112234457799
Q ss_pred EEEEEecccCCCCccCCeEEEEECCCCceEecCCCCC-cccCCCCcccccccCCCCCEEEEECCEEEEEeC
Q 043540 278 KFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFP-ARIGSDGVSVISAAGEAPPLLAVVNNELYAADH 347 (437)
Q Consensus 278 ~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg 347 (437)
+||++---. .....-..+.+-+..-..|+.+.-... ..+. ...+.+++.||++|.
T Consensus 350 vLyLtTRgt-~~~~~GS~L~rs~d~Gq~w~slrfp~nvHhtn--------------lPFakvgD~l~mFgs 405 (670)
T 3ju4_A 350 VLYLITRGT-RGDRLGSSLHRSRDIGQTWESLRFPHNVHHTT--------------LPFAKVGDDLIMFGS 405 (670)
T ss_dssp EEEEEEEES-CTTSCCCEEEEESSTTSSCEEEECTTCCCSSC--------------CCEEEETTEEEEEEE
T ss_pred EEEEEecCc-CCCCCcceeeeecccCCchhheeccccccccC--------------CCcceeCCEEEEEec
Confidence 999985433 233445567777777888998853221 1222 236788999999973
No 269
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=88.72 E-value=2.2 Score=41.38 Aligned_cols=132 Identities=11% Similarity=0.095 Sum_probs=74.1
Q ss_pred CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE--CCE-EEEEecccCCCCccCCeEEEEECCCC
Q 043540 228 GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM--DGK-FYVIGGIGEGSSAMLTDVEMYDLETG 304 (437)
Q Consensus 228 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~g~-lyv~GG~~~~~~~~~~~v~~yd~~~~ 304 (437)
++.||++--. ..+.++|+.+++.+.+.. .......+.+ +|+ ||+..... ......+..++.. +
T Consensus 149 ~g~Lyv~d~~-------~~I~~id~~~~~v~~~~~---~~~~P~~ia~d~~G~~lyvad~~~---~~~~~~v~~~~~~-g 214 (430)
T 3tc9_A 149 HNHLYLVGEQ-------HPTRLIDFEKEYVSTVYS---GLSKVRTICWTHEADSMIITNDQN---NNDRPNNYILTRE-S 214 (430)
T ss_dssp EEEEEEEEBT-------EEEEEEETTTTEEEEEEC---CCSCEEEEEECTTSSEEEEEECCS---CTTSEEEEEEEGG-G
T ss_pred CCeEEEEeCC-------CcEEEEECCCCEEEEEec---CCCCcceEEEeCCCCEEEEEeCCC---CcccceEEEEeCC-C
Confidence 4789988431 678999999988876643 1122333333 454 99886432 1222245666653 3
Q ss_pred ceE---ecCCCCCcccCCCCcccccccCCCCCEEEEE--CCEEEEEeCCCCeEEEEeCCCCcEEEccCCCCcccCCCccc
Q 043540 305 KWT---QITDMFPARIGSDGVSVISAAGEAPPLLAVV--NNELYAADHEKEEVRKFDKGRKLWRTLGRLPEQASSMNGWG 379 (437)
Q Consensus 305 ~W~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~ 379 (437)
.|. .+..+. .+..+++. ++.||+.......|++||+.+..-..+..++.... ..+
T Consensus 215 ~~~~~~~l~~~~-----------------~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~---P~g 274 (430)
T 3tc9_A 215 GFKVITELTKGQ-----------------NCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGW---EFH 274 (430)
T ss_dssp TSCSEEEEEECS-----------------SCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSC---CEE
T ss_pred ceeeeeeeccCC-----------------CceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCc---cee
Confidence 332 222111 11344553 68999998778899999999876544433332111 023
Q ss_pred EEEEEeCCEEEEEc
Q 043540 380 LAFRACGDQLIVIG 393 (437)
Q Consensus 380 ~a~~~~~~~l~v~G 393 (437)
.++..-++.|||.-
T Consensus 275 ia~~pdG~~lyv~d 288 (430)
T 3tc9_A 275 IQFHPSGNYAYIVV 288 (430)
T ss_dssp EEECTTSSEEEEEE
T ss_pred EEEcCCCCEEEEEE
Confidence 44433345588874
No 270
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=88.69 E-value=11 Score=36.74 Aligned_cols=116 Identities=11% Similarity=0.028 Sum_probs=58.4
Q ss_pred CCEEEEEcCccCCceEEEEECCCC----ceecCC---CC----CCCccceeeEE-ECCEEEEEeccCCCCCCCceEEEEE
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTN----TWSTGM---TM----NTPRCLFGSAS-LGEIAILAGGCDPRGKLLKSAELYN 251 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~----~W~~~~---~~----~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd 251 (437)
+.+||+-|.. ++.++++|..++ +-.+.- .+ ...+ -|+... -++ |||..--+..+.....+.++|
T Consensus 95 r~~l~v~~l~--s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~-Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 95 RRFLIVPGLR--SSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSR-LHTVHCGPDA-IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp SCEEEEEBTT--TCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEE-EEEEEECSSC-EEEEEEEETTSCSCCEEEEEC
T ss_pred CCEEEEccCC--CCeEEEEECCCCCCCceeeeeechhhcccccCCCc-ccceeECCCe-EEEEcCCCcCCCCCCeEEEEE
Confidence 5677777643 467999998776 221111 01 1112 233333 345 777532222223358899999
Q ss_pred CCCCcEEe-cC--CCCcCCcCeeEE-EECCEEEEEec----------ccCCCC---ccCCeEEEEECCCCc
Q 043540 252 SITGTWMP-IS--SMHKARKMCSGV-FMDGKFYVIGG----------IGEGSS---AMLTDVEMYDLETGK 305 (437)
Q Consensus 252 ~~t~~W~~-~~--~~~~~r~~~~~~-~~~g~lyv~GG----------~~~~~~---~~~~~v~~yd~~~~~ 305 (437)
.+|.+=.. .+ ..+. ...+... .-++++++... .. ... ...+.+.+||+.+++
T Consensus 171 ~~T~~v~~~~~~~~~~~-~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~-~~~~~~~~~d~V~v~D~~~~k 239 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQ-YLAYDFWWNLPNEVLVSSEWAVPNTIEDGLK-LEHLKDRYGNRIHFWDLRKRK 239 (462)
T ss_dssp TTTCCEEEECCSBCTTC-CCCCCEEEETTTTEEEECBCCCHHHHTTCCC-TTTHHHHSCCEEEEEETTTTE
T ss_pred CCCCeEEEEEccCCCCc-cccceEEECCCCCEEEEccCcCccccccccc-hhhhhhccCCEEEEEECCCCc
Confidence 99876322 11 1111 1122222 22455555542 11 000 346789999999763
No 271
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=88.64 E-value=17 Score=34.60 Aligned_cols=109 Identities=8% Similarity=-0.015 Sum_probs=58.4
Q ss_pred ccccEEEEEec-----CceEEEeccCCCCee-eCCCCCCccccccCCceeEEe-CCEEEEEcCc-------cCCceEEEE
Q 043540 137 IIEHWVYFSCK-----LKEWEAFDPIHHRWM-HLPPMNASDCFMCADKESLAV-GTELLVFGKE-------VHGNAIYRY 202 (437)
Q Consensus 137 ~~~~~l~~~~~-----~~~~~~yDp~~~~W~-~l~~~p~~~~~~~~~~~~~~~-~~~lyv~GG~-------~~~~~v~~y 202 (437)
....++|+... ...+..+|+.+++-. .++.-..| +. .+.- +..+|+.... ...+.+.++
T Consensus 42 pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P---~v----a~spDG~~lyVan~~~~r~~~G~~~~~Vsvi 114 (386)
T 3sjl_D 42 PDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP---NP----VVADDGSFIAHASTVFSRIARGERTDYVEVF 114 (386)
T ss_dssp CCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC---EE----EECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC---cE----EECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence 33466777643 357889999887643 22211111 11 1222 4567776411 123569999
Q ss_pred ECCCCceecCCCCCC-C-----ccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcE
Q 043540 203 NLLTNTWSTGMTMNT-P-----RCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTW 257 (437)
Q Consensus 203 d~~t~~W~~~~~~~~-~-----r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W 257 (437)
|+.|++-..--+++. . ..-+..++- +..+||.... ..+.+.+.|..+++=
T Consensus 115 D~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~-----~~~~VsVID~~t~~v 172 (386)
T 3sjl_D 115 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS-----PAPAVGVVDLEGKAF 172 (386)
T ss_dssp CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS-----SSCEEEEEETTTTEE
T ss_pred ECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC-----CCCeEEEEECCCCcE
Confidence 999887432111111 1 122233332 5678887421 136889999998864
No 272
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=88.47 E-value=0.13 Score=52.19 Aligned_cols=34 Identities=9% Similarity=0.029 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHhhcc-CccchhhHHHHhHHHHHhh
Q 043540 90 PELGRDITINCLLRC-SRSDYGAIASLNRAFRSLI 123 (437)
Q Consensus 90 ~~LP~dl~~~~L~rl-P~~~~~~~~~V~k~w~sli 123 (437)
..||+|++..||.+| |..+..+++.|||+|+.+.
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~ 48 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID 48 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence 579999999999999 8999999999999999873
No 273
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=88.41 E-value=17 Score=34.26 Aligned_cols=80 Identities=11% Similarity=0.004 Sum_probs=42.8
Q ss_pred CCEEEEEeC---------CCCeEEEEeCCCCcE-EEccCCCCcccCCCcccEEEEEeCC-EEEEEcCCCCCCCCeeEEEe
Q 043540 339 NNELYAADH---------EKEEVRKFDKGRKLW-RTLGRLPEQASSMNGWGLAFRACGD-QLIVIGGPRDSGGGIVELNG 407 (437)
Q Consensus 339 ~~~ly~~gg---------~~~~v~~yd~~~~~W-~~v~~lp~~~~~~~~~~~a~~~~~~-~l~v~GG~~~~~~~~~~~~~ 407 (437)
+++||+... ..+.|+++|.++++= ..+ .++... ++.++..-+. .+|+..... ..+
T Consensus 278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i-~~g~~p-----~~i~~s~Dg~~~l~v~~~~~--------~~V 343 (373)
T 2mad_H 278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI-SLGHDV-----DAISVAQDGGPDLYALSAGT--------EVL 343 (373)
T ss_pred CCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEE-ECCCCc-----CeEEECCCCCeEEEEEcCCC--------CeE
Confidence 478998743 135799999988654 233 222211 4566544445 455554222 235
Q ss_pred eecCCCCCCceecCc-cCCCceEeeeEE
Q 043540 408 WVPDEGPPHWKLLAR-QPMCGFVFNCTV 434 (437)
Q Consensus 408 ~~~d~~~~~W~~l~~-~p~~~~~~~~~v 434 (437)
.++|.. +++.+.. .+.|...|.-.+
T Consensus 344 ~ViD~~--t~~vv~~i~~vG~~P~~~~~ 369 (373)
T 2mad_H 344 HIYDAG--AGDQDQSTVELGSGPQVLSV 369 (373)
T ss_pred EEEECC--CCCEEeeecCCCCCCcEEEE
Confidence 556743 4555555 445555444433
No 274
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=87.93 E-value=6.9 Score=38.19 Aligned_cols=61 Identities=10% Similarity=0.119 Sum_probs=38.6
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCcEE-----Ec----cCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeee
Q 043540 339 NNELYAADHEKEEVRKFDKGRKLWR-----TL----GRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWV 409 (437)
Q Consensus 339 ~~~ly~~gg~~~~v~~yd~~~~~W~-----~v----~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~ 409 (437)
++++|++- .+..|+||..+++-. .+ +.+|.. .-+|+ ..++++|+|-|.. .|+
T Consensus 367 ~~k~yfFk--G~~yw~yd~~~~~~~~gYPk~I~~~fpgip~~------iDAA~-~~~g~~YFFkg~~----------ywr 427 (450)
T 1su3_A 367 TGKTYFFV--ANKYWRYDEYKRSMDPGYPKMIAHDFPGIGHK------VDAVF-MKDGFFYFFHGTR----------QYK 427 (450)
T ss_dssp TTEEEEEE--TTEEEEEETTTTEECSSCSEEHHHHSTTSCSC------CSEEE-EETTEEEEEETTE----------EEE
T ss_pred CCeEEEEe--CCEEEEEeCCCccccCCCCcchhhcCCCCCCC------ccEEE-EcCCeEEEEeCCE----------EEE
Confidence 68999995 468999998764321 11 122221 23444 4689999997754 788
Q ss_pred cCCCCCCce
Q 043540 410 PDEGPPHWK 418 (437)
Q Consensus 410 ~d~~~~~W~ 418 (437)
||..+.+=.
T Consensus 428 ~d~~~~~v~ 436 (450)
T 1su3_A 428 FDPKTKRIL 436 (450)
T ss_dssp EETTTTEEE
T ss_pred EECCcceEe
Confidence 887665433
No 275
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=87.91 E-value=26 Score=35.81 Aligned_cols=148 Identities=16% Similarity=0.180 Sum_probs=75.1
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEE-ECCEEEEEeccCCCCCCCceEEEEECCCCcEEec-C
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSAS-LGEIAILAGGCDPRGKLLKSAELYNSITGTWMPI-S 261 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~-~ 261 (437)
++.+++.|+. ...+.+||..++.-...-.- +...-.+++. -++..++.|+.+ ..+.++|.....=..+ .
T Consensus 441 ~g~~l~sgs~--Dg~v~vwd~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~s~D------~~i~iwd~~~~~~~~~~~ 511 (694)
T 3dm0_A 441 DGQFALSGSW--DGELRLWDLAAGVSTRRFVG-HTKDVLSVAFSLDNRQIVSASRD------RTIKLWNTLGECKYTISE 511 (694)
T ss_dssp TSSEEEEEET--TSEEEEEETTTTEEEEEEEC-CSSCEEEEEECTTSSCEEEEETT------SCEEEECTTSCEEEEECS
T ss_pred CCCEEEEEeC--CCcEEEEECCCCcceeEEeC-CCCCEEEEEEeCCCCEEEEEeCC------CEEEEEECCCCcceeecc
Confidence 4556666643 34688899887643221000 0111111222 245666677654 4577788755432222 2
Q ss_pred CCCcCCcCeeEEEE--CC--EEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEE
Q 043540 262 SMHKARKMCSGVFM--DG--KFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV 337 (437)
Q Consensus 262 ~~~~~r~~~~~~~~--~g--~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (437)
.....+.....+.+ ++ .+++.|+.+ ..+..||+.+.+-...- .+|...+ ..++.
T Consensus 512 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-------~~v~vwd~~~~~~~~~~------~~h~~~v---------~~v~~ 569 (694)
T 3dm0_A 512 GGEGHRDWVSCVRFSPNTLQPTIVSASWD-------KTVKVWNLSNCKLRSTL------AGHTGYV---------STVAV 569 (694)
T ss_dssp STTSCSSCEEEEEECSCSSSCEEEEEETT-------SCEEEEETTTCCEEEEE------CCCSSCE---------EEEEE
T ss_pred CCCCCCCcEEEEEEeCCCCcceEEEEeCC-------CeEEEEECCCCcEEEEE------cCCCCCE---------EEEEE
Confidence 22222222333333 22 456666654 35888999876543221 1110000 11222
Q ss_pred -ECCEEEEEeCCCCeEEEEeCCCCcE
Q 043540 338 -VNNELYAADHEKEEVRKFDKGRKLW 362 (437)
Q Consensus 338 -~~~~ly~~gg~~~~v~~yd~~~~~W 362 (437)
-++++++.|+..+.|.+||..+.+-
T Consensus 570 spdg~~l~sg~~Dg~i~iwd~~~~~~ 595 (694)
T 3dm0_A 570 SPDGSLCASGGKDGVVLLWDLAEGKK 595 (694)
T ss_dssp CTTSSEEEEEETTSBCEEEETTTTEE
T ss_pred eCCCCEEEEEeCCCeEEEEECCCCce
Confidence 2677888888888899999988753
No 276
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=87.49 E-value=25 Score=35.29 Aligned_cols=146 Identities=12% Similarity=0.096 Sum_probs=77.4
Q ss_pred EEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecC-C-
Q 043540 187 LLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPIS-S- 262 (437)
Q Consensus 187 lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~-~- 262 (437)
.++.|+.. ..+.+||..+.+... .+........++.+ ++++++.|+.+ ..+.++|..+++-...- .
T Consensus 162 ~l~s~s~D--~~v~lwd~~~~~~~~--~l~~H~~~V~~v~fspdg~~las~s~D------~~i~lwd~~~g~~~~~~~~~ 231 (611)
T 1nr0_A 162 RIISGSDD--NTVAIFEGPPFKFKS--TFGEHTKFVHSVRYNPDGSLFASTGGD------GTIVLYNGVDGTKTGVFEDD 231 (611)
T ss_dssp EEEEEETT--SCEEEEETTTBEEEE--EECCCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTCCEEEECBCT
T ss_pred EEEEEeCC--CeEEEEECCCCeEee--eeccccCceEEEEECCCCCEEEEEECC------CcEEEEECCCCcEeeeeccc
Confidence 34555432 357778865543322 12111111222222 56777777754 56788998877653221 1
Q ss_pred -CC--cCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEE
Q 043540 263 -MH--KARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV 337 (437)
Q Consensus 263 -~~--~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (437)
+. ........+.+ ++++.+.|+.+ ..+..+|+.+.+....-........ ....+.
T Consensus 232 ~~~~~~h~~~V~~v~~spdg~~l~s~s~D-------~~v~lWd~~~~~~~~~~~~~~~~~~-------------~~~~~~ 291 (611)
T 1nr0_A 232 SLKNVAHSGSVFGLTWSPDGTKIASASAD-------KTIKIWNVATLKVEKTIPVGTRIED-------------QQLGII 291 (611)
T ss_dssp TSSSCSSSSCEEEEEECTTSSEEEEEETT-------SEEEEEETTTTEEEEEEECCSSGGG-------------CEEEEE
T ss_pred cccccccCCCEEEEEECCCCCEEEEEeCC-------CeEEEEeCCCCceeeeecCCCCccc-------------eeEEEE
Confidence 10 11112222333 67777877765 3688999988766433221111111 012334
Q ss_pred ECCEEEEEeCCCCeEEEEeCCCCcE
Q 043540 338 VNNELYAADHEKEEVRKFDKGRKLW 362 (437)
Q Consensus 338 ~~~~ly~~gg~~~~v~~yd~~~~~W 362 (437)
.++..++.+.....+..||+.+..-
T Consensus 292 ~~~~~l~s~s~d~~i~~~~~~~~~~ 316 (611)
T 1nr0_A 292 WTKQALVSISANGFINFVNPELGSI 316 (611)
T ss_dssp ECSSCEEEEETTCCEEEEETTTTEE
T ss_pred EcCCEEEEEeCCCcEEEEeCCCCCc
Confidence 4666666666677899999887653
No 277
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=87.38 E-value=14 Score=32.13 Aligned_cols=94 Identities=13% Similarity=0.234 Sum_probs=54.0
Q ss_pred eCCEEEEEcCccCCceEEEEECCC---------CceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECC
Q 043540 183 VGTELLVFGKEVHGNAIYRYNLLT---------NTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSI 253 (437)
Q Consensus 183 ~~~~lyv~GG~~~~~~v~~yd~~t---------~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~ 253 (437)
.++++|+|-| +.+|+++... ..|..+ |. .--++...++++|++-| +..++|+..
T Consensus 27 ~~g~~yfFkg----~~~Wr~~~~~~~~~p~~Is~~wpgL---P~--~IDAA~~~~~~~yfFkG--------~~yw~~~~~ 89 (219)
T 1hxn_A 27 NHGATYVFSG----SHYWRLDTNRDGWHSWPIAHQWPQG---PS--TVDAAFSWEDKLYLIQD--------TKVYVFLTK 89 (219)
T ss_dssp TTSCEEEEET----TEEEESSSSSCTTCCEEGGGTCTTS---CS--SCSEEEEETTEEEEEET--------TEEEEEECS
T ss_pred CCCcEEEEeC----CEEEEEcCCCCCCCceEhhhhccCC---CC--CccEEEEECCcEEEecC--------CEEEEEeCC
Confidence 5789999954 3456655432 223333 32 12234445899999977 568899875
Q ss_pred CCcEEecC----------CCCcC--CcCeeEEE-E--CCEEEEEecccCCCCccCCeEEEEECCC
Q 043540 254 TGTWMPIS----------SMHKA--RKMCSGVF-M--DGKFYVIGGIGEGSSAMLTDVEMYDLET 303 (437)
Q Consensus 254 t~~W~~~~----------~~~~~--r~~~~~~~-~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~ 303 (437)
++ .+..+ .+|.. ....-+++ . ++++|++-|.. .+.||..+
T Consensus 90 ~~-~~~~~gyPk~i~~~~G~p~~~~~~~IDAA~~~~~~gk~yfFkG~~---------ywr~d~~~ 144 (219)
T 1hxn_A 90 GG-YTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAGRR---------LWWLDLKS 144 (219)
T ss_dssp SS-CEECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEETTE---------EEEEEGGG
T ss_pred CC-ceecCCCCeehhhccCCCCcccccccceeEEecCCCEEEEEeCCE---------EEEEeCCC
Confidence 42 12221 12222 11233443 3 68999998765 78999765
No 278
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=86.79 E-value=15 Score=34.72 Aligned_cols=161 Identities=11% Similarity=0.049 Sum_probs=78.6
Q ss_pred CEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCC
Q 043540 185 TELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISS 262 (437)
Q Consensus 185 ~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~ 262 (437)
+.+++.|+. ...+.+||..+.+-...-..+.......++.+ ++..++.|+.+ ..+.+||..+++....-.
T Consensus 182 ~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~ 253 (437)
T 3gre_A 182 KSLLVALTN--LSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTR------GIIDIWDIRFNVLIRSWS 253 (437)
T ss_dssp CEEEEEEET--TSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETT------SCEEEEETTTTEEEEEEB
T ss_pred CCEEEEEeC--CCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCC------CeEEEEEcCCccEEEEEe
Confidence 556666643 35788999987654221111101112222223 56777777754 458899998865432111
Q ss_pred CCcCCcCeeEE-EE-----CCEEEEEecccCCCCccCCeEEEEECCCCceEec-CC---CCC-cccCCCC------cccc
Q 043540 263 MHKARKMCSGV-FM-----DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQI-TD---MFP-ARIGSDG------VSVI 325 (437)
Q Consensus 263 ~~~~r~~~~~~-~~-----~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~-~~---~~~-~~~~~~~------~~~~ 325 (437)
.+. ......+ .. ++++.+.|+.+ ..+..||+.+++-... .. .+. ....... .+..
T Consensus 254 ~~~-~~~v~~~~~~~~~s~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 325 (437)
T 3gre_A 254 FGD-HAPITHVEVCQFYGKNSVIVVGGSSK-------TFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCG 325 (437)
T ss_dssp CTT-CEEEEEEEECTTTCTTEEEEEEESTT-------EEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCC
T ss_pred cCC-CCceEEEEeccccCCCccEEEEEcCC-------CcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecc
Confidence 111 1111111 11 35566666554 3588899887653211 10 000 0000000 0000
Q ss_pred cccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCc
Q 043540 326 SAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKL 361 (437)
Q Consensus 326 ~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~ 361 (437)
..-......++..++++++.|+..+.|.+||..+.+
T Consensus 326 ~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~ 361 (437)
T 3gre_A 326 IRSLNALSTISVSNDKILLTDEATSSIVMFSLNELS 361 (437)
T ss_dssp CCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGG
T ss_pred cccCCceEEEEECCceEEEecCCCCeEEEEECCCcc
Confidence 000000123445588888888888899999998765
No 279
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=86.55 E-value=24 Score=38.20 Aligned_cols=140 Identities=16% Similarity=0.091 Sum_probs=76.1
Q ss_pred CceEEEEECCCCceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEE-EEECCCCcEEecCCCCcCCcCeeEEE
Q 043540 196 GNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAE-LYNSITGTWMPISSMHKARKMCSGVF 274 (437)
Q Consensus 196 ~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~-~yd~~t~~W~~~~~~~~~r~~~~~~~ 274 (437)
...+++++..++....+...+..+....... +++.+++++. ...++ +||..++.-+.+. .. ......+.
T Consensus 316 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~------~~~l~~~~d~~~~~~~~l~--~~-~~~~~~~~ 385 (1045)
T 1k32_A 316 RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTR------EGDFLGIYDYRTGKAEKFE--EN-LGNVFAMG 385 (1045)
T ss_dssp TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEET------TEEEEEEEETTTCCEEECC--CC-CCSEEEEE
T ss_pred cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEEC------CCceEEEEECCCCCceEec--CC-ccceeeeE
Confidence 3468888887776655433222122222223 5554444432 25788 9999988776665 11 12222232
Q ss_pred E--CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCC----
Q 043540 275 M--DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHE---- 348 (437)
Q Consensus 275 ~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~---- 348 (437)
+ ||+..+++... ..+..+|+.+++-..+..-...... .....-+|+.++++..
T Consensus 386 ~SpDG~~la~~~~~-------~~v~~~d~~tg~~~~~~~~~~~~v~--------------~~~~SpDG~~la~~~~~~~~ 444 (1045)
T 1k32_A 386 VDRNGKFAVVANDR-------FEIMTVDLETGKPTVIERSREAMIT--------------DFTISDNSRFIAYGFPLKHG 444 (1045)
T ss_dssp ECTTSSEEEEEETT-------SEEEEEETTTCCEEEEEECSSSCCC--------------CEEECTTSCEEEEEEEECSS
T ss_pred ECCCCCEEEEECCC-------CeEEEEECCCCceEEeccCCCCCcc--------------ceEECCCCCeEEEEecCccc
Confidence 3 67766665443 3689999998877655421111111 1222235664444322
Q ss_pred ------CCeEEEEeCCCCcEEEcc
Q 043540 349 ------KEEVRKFDKGRKLWRTLG 366 (437)
Q Consensus 349 ------~~~v~~yd~~~~~W~~v~ 366 (437)
...|++||..+.+...+.
T Consensus 445 ~~~~~~~~~i~l~d~~~g~~~~l~ 468 (1045)
T 1k32_A 445 ETDGYVMQAIHVYDMEGRKIFAAT 468 (1045)
T ss_dssp TTCSCCEEEEEEEETTTTEEEECS
T ss_pred cccCCCCCeEEEEECCCCcEEEee
Confidence 247999999988765554
No 280
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=86.47 E-value=13 Score=37.02 Aligned_cols=139 Identities=12% Similarity=0.035 Sum_probs=73.8
Q ss_pred ceEEEEEC--CCCceecCCCCCCCccceeeEEEC-CEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEE
Q 043540 197 NAIYRYNL--LTNTWSTGMTMNTPRCLFGSASLG-EIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGV 273 (437)
Q Consensus 197 ~~v~~yd~--~t~~W~~~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~ 273 (437)
..+|..+. ....- .+......+ ..+...+ +.++++.+.. ..+.+||..+++-+.+...+. .....
T Consensus 90 ~~l~~~~~~~~g~~~-~l~~~~~~~--~~~~s~dg~~~~~~s~~~------~~~~l~d~~~g~~~~l~~~~~---~~~~~ 157 (582)
T 3o4h_A 90 HALFKVNTSRPGEEQ-RLEAVKPMR--ILSGVDTGEAVVFTGATE------DRVALYALDGGGLRELARLPG---FGFVS 157 (582)
T ss_dssp EEEEEEETTSTTCCE-ECTTSCSBE--EEEEEECSSCEEEEEECS------SCEEEEEEETTEEEEEEEESS---CEEEE
T ss_pred eEEEEEeccCCCccc-cccCCCCce--eeeeCCCCCeEEEEecCC------CCceEEEccCCcEEEeecCCC---ceEEE
Confidence 46777777 33322 333322222 2333444 3455554432 223478998887766653332 22233
Q ss_pred EECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCC--e
Q 043540 274 FMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKE--E 351 (437)
Q Consensus 274 ~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~--~ 351 (437)
.-||+..+++..... ....++.+|+.+++++.+..-...... ....-||+.++...... .
T Consensus 158 spDG~~la~~~~~~~---~~~~i~~~d~~~g~~~~l~~~~~~~~~---------------~~~SpDG~~l~~~~~~~~~~ 219 (582)
T 3o4h_A 158 DIRGDLIAGLGFFGG---GRVSLFTSNLSSGGLRVFDSGEGSFSS---------------ASISPGMKVTAGLETAREAR 219 (582)
T ss_dssp EEETTEEEEEEEEET---TEEEEEEEETTTCCCEEECCSSCEEEE---------------EEECTTSCEEEEEECSSCEE
T ss_pred CCCCCEEEEEEEcCC---CCeEEEEEcCCCCCceEeecCCCcccc---------------ceECCCCCEEEEccCCCeeE
Confidence 457776665554311 123489999999988876432211111 11222565444443333 7
Q ss_pred EEEEeCCCCcEEEc
Q 043540 352 VRKFDKGRKLWRTL 365 (437)
Q Consensus 352 v~~yd~~~~~W~~v 365 (437)
|+++|.++++...+
T Consensus 220 i~~~d~~~~~~~~~ 233 (582)
T 3o4h_A 220 LVTVDPRDGSVEDL 233 (582)
T ss_dssp EEEECTTTCCEEEC
T ss_pred EEEEcCCCCcEEEc
Confidence 99999999888733
No 281
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=86.00 E-value=22 Score=33.08 Aligned_cols=80 Identities=18% Similarity=0.297 Sum_probs=47.0
Q ss_pred CCEEEEEeC----------CCCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEee
Q 043540 339 NNELYAADH----------EKEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGW 408 (437)
Q Consensus 339 ~~~ly~~gg----------~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~ 408 (437)
++++|+... ..+.|+++|.++.+ .+..++... .++.++..-+.+||+.++ ..+.+|
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~--~v~~i~~~~----p~~ia~spdg~~l~v~n~--------~~v~v~ 330 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ--RVARIPGRD----ALSMTIDQQRNLMLTLDG--------GNVNVY 330 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE--EEEEEECTT----CCEEEEETTTTEEEEECS--------SCEEEE
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECCCCc--EEEEEecCC----eeEEEECCCCCEEEEeCC--------CeEEEE
Confidence 478998743 13589999998875 343333322 146666555678887763 134455
Q ss_pred ecCCCCCCceecCcc-CCCceEeeeEE
Q 043540 409 VPDEGPPHWKLLARQ-PMCGFVFNCTV 434 (437)
Q Consensus 409 ~~d~~~~~W~~l~~~-p~~~~~~~~~v 434 (437)
|..+.+-+.+..+ +.+...+..++
T Consensus 331 --D~~t~~l~~~~~i~~~G~~P~~~~~ 355 (361)
T 2oiz_A 331 --DISQPEPKLLRTIEGAAEASLQVQF 355 (361)
T ss_dssp --ECSSSSCEEEEEETTSCSSEEEEEE
T ss_pred --ECCCCcceeeEEeccCCCCcEEEEe
Confidence 6444322777764 55666555544
No 282
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=85.39 E-value=30 Score=34.10 Aligned_cols=206 Identities=14% Similarity=0.056 Sum_probs=97.7
Q ss_pred EEEEec-CceEEEeccCCCCeeeCCCCCCccccccCCceeEEe----------CCEEEEEcCcc----CCceEEEEECCC
Q 043540 142 VYFSCK-LKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAV----------GTELLVFGKEV----HGNAIYRYNLLT 206 (437)
Q Consensus 142 l~~~~~-~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~----------~~~lyv~GG~~----~~~~v~~yd~~t 206 (437)
||++.. ...+..+|+..+.-..+........... ..+++ +..||+.--.. ....+++++...
T Consensus 154 Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p---~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~ 230 (496)
T 3kya_A 154 LYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRI---RSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNA 230 (496)
T ss_dssp EEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBE---EEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCT
T ss_pred EEEEECCCCeEEEEECCCCEEEEEEccCccccCCC---cEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCC
Confidence 444433 2457788999888777654432110000 11222 44588874221 234578887654
Q ss_pred -CceecCC---CCCCCccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECC-------CCc-EEec-----------C
Q 043540 207 -NTWSTGM---TMNTPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSI-------TGT-WMPI-----------S 261 (437)
Q Consensus 207 -~~W~~~~---~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~-------t~~-W~~~-----------~ 261 (437)
+.|...+ .++.-...+++++. ++.||+.--. ...+.+||+. +.+ |+.. .
T Consensus 231 ~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~------~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~ 304 (496)
T 3kya_A 231 DGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYE------KGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLF 304 (496)
T ss_dssp TSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETT------TTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEE
T ss_pred CCceeecccceeeccCCCceEEEEcCCCCeEEEEECC------CCEEEEEecccccccccCceeecccccccccccceeE
Confidence 4564201 11111223455554 4788887431 2568999997 554 4322 1
Q ss_pred CCCcCCcCeeEEEE-CCE-EEEEecccCCCCccCCeEEE--EECCCCce---EecCCCCCcccCCCCcccccccCCCCC-
Q 043540 262 SMHKARKMCSGVFM-DGK-FYVIGGIGEGSSAMLTDVEM--YDLETGKW---TQITDMFPARIGSDGVSVISAAGEAPP- 333 (437)
Q Consensus 262 ~~~~~r~~~~~~~~-~g~-lyv~GG~~~~~~~~~~~v~~--yd~~~~~W---~~~~~~~~~~~~~~~~~~~~~~~~~~~- 333 (437)
..+........++. +|+ |||.--. .+.|.+ +|..++.. +.+...+. ..+...-....+....|.
T Consensus 305 ~~~~~~~p~~ia~~p~G~~lYvaD~~-------~h~I~kid~dg~~~~~~~~~~~aG~~g-~~G~~DG~~~~a~f~~P~~ 376 (496)
T 3kya_A 305 TIADPSWEFQIFIHPTGKYAYFGVIN-------NHYFMRSDYDEIKKEFITPYNFVGGYK-QSGYRDDVGTEARMNNPCQ 376 (496)
T ss_dssp ECSSSSCCEEEEECTTSSEEEEEETT-------TTEEEEEEEETTTTEECCCEEEEEBTT-BCCCBCCBGGGCBCSSEEE
T ss_pred ecCCCCCceEEEEcCCCCEEEEEeCC-------CCEEEEEecCCCcceecccEEecCCCC-CCcccCCcccccccCCCeE
Confidence 12211112233333 555 8887422 245777 45554433 12211100 000000000000001123
Q ss_pred EEEEE--------CCEEEEEeCCCCeEEEEeCCCCcEEEc
Q 043540 334 LLAVV--------NNELYAADHEKEEVRKFDKGRKLWRTL 365 (437)
Q Consensus 334 ~~~~~--------~~~ly~~gg~~~~v~~yd~~~~~W~~v 365 (437)
.+++. ++.||+.+.....|.++++. ..-..+
T Consensus 377 gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~-G~v~Ti 415 (496)
T 3kya_A 377 GVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPE-GIVSTY 415 (496)
T ss_dssp EEEEECTTCCSSCCEEEEEEEGGGTEEEEECTT-CBEEEE
T ss_pred EEEEccccccccCCCeEEEEECCCCEEEEEeCC-CCEEEE
Confidence 34443 47999999888899999964 455555
No 283
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=85.06 E-value=8 Score=37.46 Aligned_cols=131 Identities=12% Similarity=0.166 Sum_probs=71.0
Q ss_pred CEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCCce
Q 043540 229 EIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGKW 306 (437)
Q Consensus 229 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W 306 (437)
+.||+.-.. ..+.++|+.+++.+.+.. .......+.+ +|+||+..... ......+..++... .+
T Consensus 153 g~Lyv~D~~-------~~I~~id~~~g~v~~~~~---~~~~P~giavd~dG~lyVad~~~---~~~~~gv~~~~~~~-~~ 218 (433)
T 4hw6_A 153 DDLYWVGQR-------DAFRHVDFVNQYVDIKTT---NIGQCADVNFTLNGDMVVVDDQS---SDTNTGIYLFTRAS-GF 218 (433)
T ss_dssp CEEEEECBT-------SCEEEEETTTTEEEEECC---CCSCEEEEEECTTCCEEEEECCS---CTTSEEEEEECGGG-TT
T ss_pred CEEEEEeCC-------CCEEEEECCCCEEEEeec---CCCCccEEEECCCCCEEEEcCCC---CcccceEEEEECCC-Ce
Confidence 789998421 678999999988877643 1122233333 57799885322 11122355555432 22
Q ss_pred E---ecCCCCCcccCCCCcccccccCCCCCEEEEE--CCEEEEEeCCCCeEEEEeCCCCcE-EEccCCCCcccCCCcccE
Q 043540 307 T---QITDMFPARIGSDGVSVISAAGEAPPLLAVV--NNELYAADHEKEEVRKFDKGRKLW-RTLGRLPEQASSMNGWGL 380 (437)
Q Consensus 307 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ly~~gg~~~~v~~yd~~~~~W-~~v~~lp~~~~~~~~~~~ 380 (437)
. .++.+.. +..+++. ++.||+.......|++||+.+.+- ..+....... ..++.
T Consensus 219 ~~~~~~~~~~~-----------------P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~---~~~~i 278 (433)
T 4hw6_A 219 TERLSLCNARG-----------------AKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKG---SNFHI 278 (433)
T ss_dssp CCEEEEEECSS-----------------BCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCS---SCEEE
T ss_pred eccccccccCC-----------------CCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCC---CcccE
Confidence 1 1111111 1234443 689999987778899999987665 3332221111 11234
Q ss_pred EEEEeCCEEEEEc
Q 043540 381 AFRACGDQLIVIG 393 (437)
Q Consensus 381 a~~~~~~~l~v~G 393 (437)
++...++.|||.-
T Consensus 279 a~dpdG~~LYvad 291 (433)
T 4hw6_A 279 VWHPTGDWAYIIY 291 (433)
T ss_dssp EECTTSSEEEEEE
T ss_pred EEeCCCCEEEEEe
Confidence 4433345688874
No 284
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=84.92 E-value=0.41 Score=45.53 Aligned_cols=107 Identities=9% Similarity=-0.008 Sum_probs=45.4
Q ss_pred EEECCEEEEEeccCCCCCCCceEEEEECCCCc--EEecCCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECC
Q 043540 225 ASLGEIAILAGGCDPRGKLLKSAELYNSITGT--WMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLE 302 (437)
Q Consensus 225 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~ 302 (437)
++.++.||+.+. + ..+..+|..+++ |+.-. .....+.++.++++|+.++.+ ..+.++|.+
T Consensus 6 ~v~~~~v~~gs~-d------g~v~a~d~~tG~~~W~~~~----~~~~s~p~~~~g~~~v~~s~d-------g~l~a~d~~ 67 (369)
T 2hz6_A 6 TLPETLLFVSTL-D------GSLHAVSKRTGSIKWTLKE----DPVLQVPTHVEEPAFLPDPND-------GSLYTLGSK 67 (369)
T ss_dssp --CTTEEEEEET-T------SEEEEEETTTCCEEEEEEC----CCSCCCC-----CCEEECTTT-------CCEEEC---
T ss_pred eeeCCEEEEEcC-C------CEEEEEECCCCCEEEEecC----CCceecceEcCCCEEEEeCCC-------CEEEEEECC
Confidence 344667776542 2 468899998876 87643 112223345677788886543 248889986
Q ss_pred CC--ceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCc--EEE
Q 043540 303 TG--KWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKL--WRT 364 (437)
Q Consensus 303 ~~--~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~--W~~ 364 (437)
++ .|+.-...+...... + ++..++.||+ |.....++.+|+++++ |+.
T Consensus 68 tG~~~w~~~~~~~~~~~~s-------------p-~~~~~~~v~~-g~~dg~v~a~D~~tG~~~w~~ 118 (369)
T 2hz6_A 68 NNEGLTKLPFTIPELVQAS-------------P-CRSSDGILYM-GKKQDIWYVIDLLTGEKQQTL 118 (369)
T ss_dssp --CCSEECSCCHHHHHTTC-------------S-CC-----CCC-CEEEEEEEEECCC--------
T ss_pred CCceeeeeeccCccccccC-------------c-eEecCCEEEE-EeCCCEEEEEECCCCcEEEEe
Confidence 65 465322111111110 1 1113555554 3334568888887654 654
No 285
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=84.78 E-value=18 Score=34.82 Aligned_cols=60 Identities=13% Similarity=0.042 Sum_probs=34.3
Q ss_pred CEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCC
Q 043540 229 EIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLET 303 (437)
Q Consensus 229 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~ 303 (437)
+.+++.|+.+ ..+.++|..++.-.. ...........+.. +|+..+.|+.+ ..+..||+..
T Consensus 162 ~~~las~s~D------g~v~iwD~~~~~~~~--~~~~~~~~v~~v~wspdg~~lasgs~d-------g~v~iwd~~~ 223 (434)
T 2oit_A 162 PSMVAVCLAD------GSIAVLQVTETVKVC--ATLPSTVAVTSVCWSPKGKQLAVGKQN-------GTVVQYLPTL 223 (434)
T ss_dssp TTEEEEEETT------SCEEEEEESSSEEEE--EEECGGGCEEEEEECTTSSCEEEEETT-------SCEEEECTTC
T ss_pred CCEEEEEECC------CeEEEEEcCCCccee--eccCCCCceeEEEEcCCCCEEEEEcCC-------CcEEEEccCC
Confidence 5677777754 457888988763211 11111222233333 67777777765 2488899873
No 286
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=84.77 E-value=17 Score=37.45 Aligned_cols=147 Identities=12% Similarity=0.049 Sum_probs=80.2
Q ss_pred CceEEEEECCCC--ceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCC---cEEecCCCCcCCcCe
Q 043540 196 GNAIYRYNLLTN--TWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITG---TWMPISSMHKARKMC 270 (437)
Q Consensus 196 ~~~v~~yd~~t~--~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~---~W~~~~~~~~~r~~~ 270 (437)
.+.++++|..+. .|+.+..-..... ......++.+|+....+. ....+...|..+. .|+.+.+-.... .
T Consensus 258 ~~~i~~~d~~~~~~~~~~l~~~~~~~~-~~~~~~g~~l~~~t~~~~---~~~~l~~~d~~~~~~~~~~~l~~~~~~~--~ 331 (693)
T 3iuj_A 258 GNRLYVKDLSQENAPLLTVQGDLDADV-SLVDNKGSTLYLLTNRDA---PNRRLVTVDAANPGPAHWRDLIPERQQV--L 331 (693)
T ss_dssp CCEEEEEETTSTTCCCEEEECSSSSCE-EEEEEETTEEEEEECTTC---TTCEEEEEETTSCCGGGCEEEECCCSSC--E
T ss_pred CcEEEEEECCCCCCceEEEeCCCCceE-EEEeccCCEEEEEECCCC---CCCEEEEEeCCCCCccccEEEecCCCCE--E
Confidence 358999998765 6776643222111 123345788998876432 2367889998764 387754322221 1
Q ss_pred eEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEE-EEC-CEEEEEeC-
Q 043540 271 SGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLA-VVN-NELYAADH- 347 (437)
Q Consensus 271 ~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~ly~~gg- 347 (437)
.....++.|++....+ ....+..+|+..+....+. ++..... ..+. .-+ +.|++...
T Consensus 332 ~~s~~g~~lv~~~~~~-----g~~~l~~~d~~g~~~~~l~-~p~~~~~--------------~~~~~~~d~~~l~~~~ss 391 (693)
T 3iuj_A 332 TVHSGSGYLFAEYMVD-----ATARVEQFDYEGKRVREVA-LPGLGSV--------------SGFNGKHDDPALYFGFEN 391 (693)
T ss_dssp EEEEETTEEEEEEEET-----TEEEEEEECTTSCEEEEEC-CSSSSEE--------------EECCCCTTCSCEEEEEEC
T ss_pred EEEEECCEEEEEEEEC-----CeeEEEEEECCCCeeEEee-cCCCceE--------------EeeecCCCCCEEEEEecC
Confidence 3334466665553322 1245888998866555553 2211100 0000 012 34444321
Q ss_pred --CCCeEEEEeCCCCcEEEccCC
Q 043540 348 --EKEEVRKFDKGRKLWRTLGRL 368 (437)
Q Consensus 348 --~~~~v~~yd~~~~~W~~v~~l 368 (437)
....++.||..+++.+.+...
T Consensus 392 ~~tP~~l~~~d~~~g~~~~l~~~ 414 (693)
T 3iuj_A 392 YAQPPTLYRFEPKSGAISLYRAS 414 (693)
T ss_dssp SSSCCEEEEECTTTCCEEEEECC
T ss_pred CCCCCEEEEEECCCCeEEEEEeC
Confidence 236899999988888777543
No 287
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=84.65 E-value=37 Score=34.53 Aligned_cols=160 Identities=13% Similarity=0.033 Sum_probs=90.9
Q ss_pred ceEEEEECCCCceecCCCCCCCccceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEE
Q 043540 197 NAIYRYNLLTNTWSTGMTMNTPRCLFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVF 274 (437)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~ 274 (437)
..+...|+.+..-..+-+++.-+...+.+.. ++.||+..-. ...+.++++.....+.+...... .-.+.++
T Consensus 15 ~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~------~~~I~r~~~~g~~~~~v~~~g~~-~P~GlAv 87 (628)
T 4a0p_A 15 ADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDIS------LKTISRAFMNGSALEHVVEFGLD-YPEGMAV 87 (628)
T ss_dssp TEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEECSSCS-CCCEEEE
T ss_pred CcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECC------CCeEEEEECCCCCcEEEEeCCCC-CcceEEE
Confidence 4567777765543322223222233344443 5899998542 36788899877655554322211 1223333
Q ss_pred --ECCEEEEEecccCCCCccCCeEEEEECCCCceEecC--CCCCcccCCCCcccccccCCCCCEEEEE--CCEEEEEe-C
Q 043540 275 --MDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQIT--DMFPARIGSDGVSVISAAGEAPPLLAVV--NNELYAAD-H 347 (437)
Q Consensus 275 --~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ly~~g-g 347 (437)
.+++||+.-.. ...++++|+....=+.+. .+..+ ..+++. +|.||+.+ +
T Consensus 88 D~~~~~LY~tD~~-------~~~I~v~~~dG~~~~~l~~~~l~~P-----------------~~iavdp~~G~lY~tD~g 143 (628)
T 4a0p_A 88 DWLGKNLYWADTG-------TNRIEVSKLDGQHRQVLVWKDLDSP-----------------RALALDPAEGFMYWTEWG 143 (628)
T ss_dssp ETTTTEEEEEETT-------TTEEEEEETTSTTCEEEECSSCCCE-----------------EEEEEETTTTEEEEEECS
T ss_pred EeCCCEEEEEECC-------CCEEEEEecCCCcEEEEEeCCCCCc-----------------ccEEEccCCCeEEEeCCC
Confidence 36999998443 246899998754322221 12111 345554 68999998 4
Q ss_pred CCCeEEEEeCCCCcEEEcc-CCCCcccCCCcccEEEEEeCCEEEEEc
Q 043540 348 EKEEVRKFDKGRKLWRTLG-RLPEQASSMNGWGLAFRACGDQLIVIG 393 (437)
Q Consensus 348 ~~~~v~~yd~~~~~W~~v~-~lp~~~~~~~~~~~a~~~~~~~l~v~G 393 (437)
....|++.++....-+.+. .+..+ .|.++...+++||+.-
T Consensus 144 ~~~~I~r~~~dG~~~~~l~~~~~~P------~GlalD~~~~~LY~aD 184 (628)
T 4a0p_A 144 GKPKIDRAAMDGSERTTLVPNVGRA------NGLTIDYAKRRLYWTD 184 (628)
T ss_dssp SSCEEEEEETTSCSCEEEECSCSSE------EEEEEETTTTEEEEEE
T ss_pred CCCEEEEEeCCCCceEEEECCCCCc------ceEEEccccCEEEEEE
Confidence 4678999998776555443 22222 2455544568898874
No 288
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=84.58 E-value=19 Score=31.16 Aligned_cols=148 Identities=14% Similarity=0.158 Sum_probs=76.0
Q ss_pred eeEEeCCEEEEEcCccCCceEEEEECCC----------CceecCCCCCCCccceeeEEE--CCEEEEEeccCCCCCCCce
Q 043540 179 ESLAVGTELLVFGKEVHGNAIYRYNLLT----------NTWSTGMTMNTPRCLFGSASL--GEIAILAGGCDPRGKLLKS 246 (437)
Q Consensus 179 ~~~~~~~~lyv~GG~~~~~~v~~yd~~t----------~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 246 (437)
++....+++|+|-| +.+|+++... ..|.. +|. .. -++... ++++|++-| +.
T Consensus 35 Ai~~~~g~~~fFkg----~~~Wr~~~~~~~~~~P~~I~~~wp~---lp~-~I-DAA~~~~~~~k~yfFkG--------~~ 97 (218)
T 1gen_A 35 GIAQIRGEIFFFKD----RFIWRTVTPRDKPMGPLLVATFWPE---LPE-KI-DAVYEAPQEEKAVFFAG--------NE 97 (218)
T ss_dssp EEEEETTEEEEEET----TEEEEESSTTSCCEEEEEGGGTCTT---SCS-CC-SEEEEETTTTEEEEEET--------TE
T ss_pred EEEeCCCcEEEEEC----CEEEEEeCCCCccCCCEEHHHhcCC---CCC-Cc-cEEEEECCCCEEEEEeC--------CE
Confidence 34567999999965 3455554432 22322 332 11 122222 689999977 56
Q ss_pred EEEEECCCCc--E-EecCC--CCcCCcCeeEEEE---CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccC
Q 043540 247 AELYNSITGT--W-MPISS--MHKARKMCSGVFM---DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIG 318 (437)
Q Consensus 247 ~~~yd~~t~~--W-~~~~~--~~~~r~~~~~~~~---~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~ 318 (437)
.|+||..+-. + +.+.. +|......-+++. +|++|++-|.. .+.||..+++-.. .-|.....
T Consensus 98 yW~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG~~---------ywr~d~~~~~v~~--gyPr~i~~ 166 (218)
T 1gen_A 98 YWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGDK---------FWRYNEVKKKMDP--GFPKLIAD 166 (218)
T ss_dssp EEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEETTE---------EEEEETTTTEECS--SCCEEHHH
T ss_pred EEEEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEECCE---------EEEEECccccccC--CCCcchhh
Confidence 7889852100 0 11111 1211112334443 69999997764 8899988764321 11111000
Q ss_pred CCCcccccccCCCCCEEEEEC--CEEEEEeCCCCeEEEEeCCCCc
Q 043540 319 SDGVSVISAAGEAPPLLAVVN--NELYAADHEKEEVRKFDKGRKL 361 (437)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~--~~ly~~gg~~~~v~~yd~~~~~ 361 (437)
. -..+|. ...++...+ |.+|++- .+..++||..+..
T Consensus 167 ~--w~g~p~---~idaAf~~~~~g~~YfFk--g~~y~~~~~~~~~ 204 (218)
T 1gen_A 167 A--WNAIPD---NLDAVVDLQGGGHSYFFK--GAYYLKLENQSLK 204 (218)
T ss_dssp H--SSSCCS---SCSEEEECTTTCEEEEEE--TTEEEEEETTEEE
T ss_pred c--cCCCCC---CCCEEEEEcCCCcEEEEE--CCEEEEEECCcee
Confidence 0 000000 012344444 8999994 4678999987654
No 289
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=84.36 E-value=25 Score=32.30 Aligned_cols=123 Identities=15% Similarity=0.124 Sum_probs=65.5
Q ss_pred CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCC----cCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEEC
Q 043540 228 GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMH----KARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDL 301 (437)
Q Consensus 228 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~----~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~ 301 (437)
++++||.......+. ..++.++ +++-...++.. ........+.+ +|+||++.-.. .......+..||+
T Consensus 27 ~g~~~v~~~~~~~~~--~~l~~~~--~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~--~~~~~~~i~~~d~ 100 (343)
T 2qe8_A 27 DGRLFLSLHQFYQPE--MQVAELT--QDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGN--QSKSVPKLVAWDT 100 (343)
T ss_dssp TSCEEEEECGGGCCS--CSEEEEE--TTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHH--HHTSCCEEEEEET
T ss_pred CCCEEEEeCCCCCCc--eEEEEEC--CCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCC--CcCCCCeEEEEEC
Confidence 678998853211111 4667777 55544443211 11123334444 58999985210 0001246999999
Q ss_pred CCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE--CCEEEEEeC---CCCeEEEEeCCCCc-EEEc
Q 043540 302 ETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV--NNELYAADH---EKEEVRKFDKGRKL-WRTL 365 (437)
Q Consensus 302 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ly~~gg---~~~~v~~yd~~~~~-W~~v 365 (437)
.+++-...-.++..... ....+..+++- ++.+|+.+. ....|.+||+.+++ |..+
T Consensus 101 ~tg~~~~~~~~~~~~~~---------~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~ 161 (343)
T 2qe8_A 101 LNNQLSRVIYLPPPITL---------SNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVL 161 (343)
T ss_dssp TTTEEEEEEECCTTTSC---------TTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEEC
T ss_pred CCCeEEEEEECChhhcc---------cccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEe
Confidence 98874322222211100 00111345554 579999976 56789999998654 6655
No 290
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=84.12 E-value=22 Score=36.50 Aligned_cols=147 Identities=11% Similarity=0.029 Sum_probs=78.9
Q ss_pred CceEEEeccCC------C--CeeeCCCCCCccccccCCceeEEeCCEEEEEcCcc-CCceEEEEECCCC---ceecCCCC
Q 043540 148 LKEWEAFDPIH------H--RWMHLPPMNASDCFMCADKESLAVGTELLVFGKEV-HGNAIYRYNLLTN---TWSTGMTM 215 (437)
Q Consensus 148 ~~~~~~yDp~~------~--~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~-~~~~v~~yd~~t~---~W~~~~~~ 215 (437)
..+++.+|..+ . .+..+..-..... .....-|+.||+.+... ....++++|..+. .|+.+.+-
T Consensus 258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~ 332 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEY-----DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPE 332 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCE-----EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC
T ss_pred ccEEEEEECcccccccCCccceEEeeCCCCcEE-----EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCC
Confidence 45677888765 3 4665543211110 11123467788776432 2457999998876 48776432
Q ss_pred CCCccceeeEEE-CCEEEEEeccCCCCCCCceEEEEECCCCc-EEecCCCCcCCcCeeEEEE--CC-EEEEEecccCCCC
Q 043540 216 NTPRCLFGSASL-GEIAILAGGCDPRGKLLKSAELYNSITGT-WMPISSMHKARKMCSGVFM--DG-KFYVIGGIGEGSS 290 (437)
Q Consensus 216 ~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~r~~~~~~~~--~g-~lyv~GG~~~~~~ 290 (437)
.........+.. ++.+++....++ ...++++|+.+++ .+.+. .+ ......+.. ++ .+++.... .
T Consensus 333 ~~~~~~~~~~~~~~~~lv~~~~~~g----~~~l~~~~~~~g~~~~~l~-~~--~~~v~~~~~s~d~~~l~~~~ss----~ 401 (710)
T 2xdw_A 333 HEKDVLEWVACVRSNFLVLCYLHDV----KNTLQLHDLATGALLKIFP-LE--VGSVVGYSGQKKDTEIFYQFTS----F 401 (710)
T ss_dssp CSSCEEEEEEEETTTEEEEEEEETT----EEEEEEEETTTCCEEEEEC-CC--SSEEEEEECCTTCSEEEEEEEC----S
T ss_pred CCCCeEEEEEEEcCCEEEEEEEECC----EEEEEEEECCCCCEEEecC-CC--CceEEEEecCCCCCEEEEEEeC----C
Confidence 211122234445 678877765443 3678999986665 44443 22 111222222 34 45444221 1
Q ss_pred ccCCeEEEEECCCCc--eEecC
Q 043540 291 AMLTDVEMYDLETGK--WTQIT 310 (437)
Q Consensus 291 ~~~~~v~~yd~~~~~--W~~~~ 310 (437)
..-..++.||+.+++ .+.+.
T Consensus 402 ~~P~~i~~~d~~tg~~~~~~l~ 423 (710)
T 2xdw_A 402 LSPGIIYHCDLTKEELEPRVFR 423 (710)
T ss_dssp SCCCEEEEEETTSSSCCCEEEE
T ss_pred CCCCEEEEEECCCCccceEEee
Confidence 223568999999877 66554
No 291
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=83.47 E-value=26 Score=31.75 Aligned_cols=177 Identities=10% Similarity=0.072 Sum_probs=88.4
Q ss_pred ceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCc-c--CCceEEEEECCCCceecCCCCCCCccceeeE
Q 043540 149 KEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKE-V--HGNAIYRYNLLTNTWSTGMTMNTPRCLFGSA 225 (437)
Q Consensus 149 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~-~--~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~ 225 (437)
..++.+|..+++-..+. . ......+-+++.+++... . ....++++|..+++.+.+...+. ....
T Consensus 43 ~~l~~~d~~~~~~~~l~-----~----~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~----~~~~ 109 (347)
T 2gop_A 43 NTIVIENLKNNARRFIE-----N----ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN----IRSL 109 (347)
T ss_dssp EEEEEEETTTCCEEEEE-----S----CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE----EEEE
T ss_pred ceEEEEeCCCCceEEcc-----c----CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC----ccce
Confidence 45677888777655541 0 000112224433333321 1 23468999998887776644332 2222
Q ss_pred EE--CC-EEEEEecc-----------------CCC---CCCCceEEEEECCCCcE-EecCCCCcCCcCeeEEEE-CCEEE
Q 043540 226 SL--GE-IAILAGGC-----------------DPR---GKLLKSAELYNSITGTW-MPISSMHKARKMCSGVFM-DGKFY 280 (437)
Q Consensus 226 ~~--~~-~iyv~GG~-----------------~~~---~~~~~~~~~yd~~t~~W-~~~~~~~~~r~~~~~~~~-~g~ly 280 (437)
.. ++ .|++.... ++. ......++++|..+++. +.+.. + ........ +| ++
T Consensus 110 ~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~---~~~~~~~spdg-~~ 184 (347)
T 2gop_A 110 EWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P---RFSSGIWHRDK-IV 184 (347)
T ss_dssp EECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E---TTCEEEEETTE-EE
T ss_pred eECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C---CcccccCCCCe-EE
Confidence 22 44 44444321 000 01135789999999887 65544 2 22333333 55 66
Q ss_pred EEecccCCCCc--c-CCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEECCE-EEEEeCC-------C
Q 043540 281 VIGGIGEGSSA--M-LTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNE-LYAADHE-------K 349 (437)
Q Consensus 281 v~GG~~~~~~~--~-~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ly~~gg~-------~ 349 (437)
+.+... .... . ...++.+| +++++.+..- .. .....-+|+ |++.+.. .
T Consensus 185 ~~~~~~-~~~~~~~~~~~l~~~d--~~~~~~l~~~----~~--------------~~~~spdg~~l~~~~~~~~~~~~~~ 243 (347)
T 2gop_A 185 VNVPHR-EIIPQYFKFWDIYIWE--DGKEEKMFEK----VS--------------FYAVDSDGERILLYGKPEKKYMSEH 243 (347)
T ss_dssp EEEECC-CSSCCSSCCEEEEEEE--TTEEEEEEEE----ES--------------EEEEEECSSCEEEEECCSSSCCCSS
T ss_pred EEEecc-cccccccccccEEEeC--CCceEEeccC----cc--------------eeeECCCCCEEEEEEccccCCcccc
Confidence 555432 1111 1 34678888 6677666431 11 111244554 4444322 3
Q ss_pred CeEEEEeCCCCcEEEcc
Q 043540 350 EEVRKFDKGRKLWRTLG 366 (437)
Q Consensus 350 ~~v~~yd~~~~~W~~v~ 366 (437)
..|+.+| ++++..+.
T Consensus 244 ~~l~~~d--~~~~~~l~ 258 (347)
T 2gop_A 244 NKLYIYD--GKEVMGIL 258 (347)
T ss_dssp CEEEEEC--SSCEEESS
T ss_pred ceEEEEC--CCceEecc
Confidence 5799999 66677664
No 292
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=82.78 E-value=48 Score=34.38 Aligned_cols=248 Identities=18% Similarity=0.150 Sum_probs=124.0
Q ss_pred EEEEecCceEEEeccCCCCeeeCCCCCCccccccCCceeEEe----CCEEEEEcCccC------CceEEEEECCCCceec
Q 043540 142 VYFSCKLKEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAV----GTELLVFGKEVH------GNAIYRYNLLTNTWST 211 (437)
Q Consensus 142 l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~----~~~lyv~GG~~~------~~~v~~yd~~t~~W~~ 211 (437)
+|+......+++.+-...+|..+...+.........-..+++ .+.||+..+... ...+++-.-.-.+|+.
T Consensus 38 ~~~~~~~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~~~l~~S~DgG~TW~~ 117 (737)
T 2cn3_A 38 IYARAAIGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNMGAILRSTDRGETWEK 117 (737)
T ss_dssp EEEECSSSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCCCEEEEESSSSSSCEE
T ss_pred EEEEecCCcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCCccEEEeCCCCCCccc
Confidence 455444456777888888999986633211100000112333 357888654211 1345544444578987
Q ss_pred CCC-CC----C-Cc-cceeeEEE---CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCC--------------
Q 043540 212 GMT-MN----T-PR-CLFGSASL---GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKAR-------------- 267 (437)
Q Consensus 212 ~~~-~~----~-~r-~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r-------------- 267 (437)
+.. .+ . .+ ..+.+++. .+.||+... .+ ..+++=+=.-.+|+.+..+|...
T Consensus 118 ~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~-~g-----~gl~~S~DgG~tW~~~~~~~~~~~~~~~p~~~~~~~~ 191 (737)
T 2cn3_A 118 TILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTR-CG-----NGLWRSTDYGVTWSKVESFPNPGTYIYDPNFDYTKDI 191 (737)
T ss_dssp EECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECS-TT-----CCEEEESSTTSSCEECTTCCCCCCCBSCTTSTTTCSB
T ss_pred CCCCcccCCCcCcccccceEEECCCCCCEEEEeec-cC-----CcEEEeCCCCcceecccCCCCCcccccCcccccccCC
Confidence 642 11 1 12 12334432 256666431 10 12222111234799987665321
Q ss_pred cCeeEEEEC----------CEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEE
Q 043540 268 KMCSGVFMD----------GKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV 337 (437)
Q Consensus 268 ~~~~~~~~~----------g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (437)
.....+.++ +.||+.-... . ..+++=.-.-.+|+.+..+|..... +.++.
T Consensus 192 ~g~~~v~~dp~~~~~~~~~~~v~~~~~~~---~---~~v~~S~DgG~tW~~~~~~p~~~~~--------------~~~~~ 251 (737)
T 2cn3_A 192 IGVVWVVFDKSSSTPGNPTKTIYVGVADK---N---ESIYRSTDGGVTWKAVPGQPKGLLP--------------HHGVL 251 (737)
T ss_dssp CCEEEEEECGGGSCTTSCCSCEEEEESCS---S---CCEEEESSTTSCCEECTTCCCSSEE--------------EEEEE
T ss_pred CCEEEEEcCCCCcccCCCCCEEEEEecCC---C---ccEEEEcCCCCceEECCCCCCcccc--------------eEEEE
Confidence 112223442 2677743211 0 1133222234579999866654332 22222
Q ss_pred E-CCEEEEEeC---------CCCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEe----CCEEEEEcCCCCCCCCee
Q 043540 338 V-NNELYAADH---------EKEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRAC----GDQLIVIGGPRDSGGGIV 403 (437)
Q Consensus 338 ~-~~~ly~~gg---------~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~----~~~l~v~GG~~~~~~~~~ 403 (437)
. ++.||+..+ ....+++++-...+|+.+...|.... ...|+.+.+++ .+.||+.+..... .
T Consensus 252 ~~~~~l~~~~~d~~g~y~~~~~g~v~~s~d~G~tW~~i~~~~~~~~-~~~~~~~~i~v~p~~~~~ly~~~~~~~~----~ 326 (737)
T 2cn3_A 252 ASNGMLYITYGDTCGPYDGNGKGQVWKFNTRTGEWIDITPIPYSSS-DNRFCFAGLAVDRQNPDIIMVTSMNAWW----P 326 (737)
T ss_dssp CTTSEEEEEEESSCCSSCCSCCEEEEEEETTTCCEEECCSSCTTST-TCCSEEEEEEECTTCTTCEEEEEECCCS----S
T ss_pred CCCCeEEEEecCCCCccccccCceEEEEeCCCCCEEEccCCCCCCc-ccccccccEEEcCCCCCEEEEEecccCC----C
Confidence 2 788998642 34579999999999999987665310 01133322222 2678887643110 1
Q ss_pred EEEeeecCCCCCCceec
Q 043540 404 ELNGWVPDEGPPHWKLL 420 (437)
Q Consensus 404 ~~~~~~~d~~~~~W~~l 420 (437)
+..+++-.....+|+.+
T Consensus 327 ~~~l~~S~DgG~tW~~~ 343 (737)
T 2cn3_A 327 DEYIFRSTDGGATWKNI 343 (737)
T ss_dssp CCCEEEESSTTSSCEES
T ss_pred CccEEEeCCCCccccch
Confidence 13466656677888887
No 293
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=82.60 E-value=9.2 Score=39.38 Aligned_cols=146 Identities=8% Similarity=0.017 Sum_probs=76.6
Q ss_pred CceEEEEECCCCceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCc---EEecCCCCcCCcCeeE
Q 043540 196 GNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGT---WMPISSMHKARKMCSG 272 (437)
Q Consensus 196 ~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~---W~~~~~~~~~r~~~~~ 272 (437)
...++++|..+..++.+..-.... ...+..++.+|+....+. ....+.++|..+.. |+.+-...........
T Consensus 251 ~~~l~~~~~~~~~~~~l~~~~~~~--~~~~~~~g~l~~~s~~~~---~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~ 325 (695)
T 2bkl_A 251 ENDVYWKRPGEKDFRLLVKGVGAK--YEVHAWKDRFYVLTDEGA---PRQRVFEVDPAKPARASWKEIVPEDSSASLLSV 325 (695)
T ss_dssp EEEEEEECTTCSSCEEEEECSSCC--EEEEEETTEEEEEECTTC---TTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEE
T ss_pred ceEEEEEcCCCCceEEeecCCCce--EEEEecCCcEEEEECCCC---CCCEEEEEeCCCCCccCCeEEecCCCCCeEEEE
Confidence 457888887777787765322211 222234556666543321 23678999987765 8776432212222233
Q ss_pred EEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCC-CcccCCCCcccccccCCCCCEEEEECC-EEEEEeC---
Q 043540 273 VFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMF-PARIGSDGVSVISAAGEAPPLLAVVNN-ELYAADH--- 347 (437)
Q Consensus 273 ~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ly~~gg--- 347 (437)
...+++|++....+ ....++.+|+..+.-..+. ++ ..... .....-++ .|++...
T Consensus 326 ~~~~~~lv~~~~~d-----g~~~l~~~~~~g~~~~~l~-~~~~~~v~--------------~~~~s~d~~~l~~~~ss~~ 385 (695)
T 2bkl_A 326 SIVGGHLSLEYLKD-----ATSEVRVATLKGKPVRTVQ-LPGVGAAS--------------NLMGLEDLDDAYYVFTSFT 385 (695)
T ss_dssp EEETTEEEEEEEET-----TEEEEEEEETTCCEEEECC-CSSSSEEC--------------CCBSCTTCSEEEEEEEETT
T ss_pred EEECCEEEEEEEEC-----CEEEEEEEeCCCCeeEEec-CCCCeEEE--------------EeecCCCCCEEEEEEcCCC
Confidence 44588888876543 1235778887654344432 11 11101 00000133 4443321
Q ss_pred CCCeEEEEeCCCCcEEEcc
Q 043540 348 EKEEVRKFDKGRKLWRTLG 366 (437)
Q Consensus 348 ~~~~v~~yd~~~~~W~~v~ 366 (437)
....++.||..+++.+.+.
T Consensus 386 ~P~~v~~~d~~~g~~~~l~ 404 (695)
T 2bkl_A 386 TPRQIYKTSVSTGKSELWA 404 (695)
T ss_dssp EEEEEEEEETTTCCEEEEE
T ss_pred CCCEEEEEECCCCcEEEEe
Confidence 1347899999888776654
No 294
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=81.74 E-value=21 Score=37.04 Aligned_cols=147 Identities=10% Similarity=-0.004 Sum_probs=80.7
Q ss_pred CCceEEEEECCCC--c-eecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCC--CcEEecCCCCcCCcC
Q 043540 195 HGNAIYRYNLLTN--T-WSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSIT--GTWMPISSMHKARKM 269 (437)
Q Consensus 195 ~~~~v~~yd~~t~--~-W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t--~~W~~~~~~~~~r~~ 269 (437)
..+.++++|..+. . |+.+..-....... ....++.||+....+. ....++++|..+ ..|+.+-+-... ..
T Consensus 292 ~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~---~~~~l~~~d~~~~~~~~~~l~~~~~~-~l 366 (741)
T 1yr2_A 292 PVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGA---PLKKIVRVDLSGSTPRFDTVVPESKD-NL 366 (741)
T ss_dssp SCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTC---TTCEEEEEECSSSSCEEEEEECCCSS-EE
T ss_pred CcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCC---CCCEEEEEeCCCCccccEEEecCCCC-eE
Confidence 3568999998877 6 87775322222211 2245677777754321 236789999888 579877432211 11
Q ss_pred eeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE--CC-EEEEEe
Q 043540 270 CSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV--NN-ELYAAD 346 (437)
Q Consensus 270 ~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~ly~~g 346 (437)
......+++|++....+ ....++.+|+..+.-..+. ++..... ..+.. ++ .|++..
T Consensus 367 ~~~~~~~~~lv~~~~~d-----g~~~l~~~~~~g~~~~~l~-~~~~~~v---------------~~~~~s~d~~~l~~~~ 425 (741)
T 1yr2_A 367 ESVGIAGNRLFASYIHD-----AKSQVLAFDLDGKPAGAVS-LPGIGSA---------------SGLSGRPGDRHAYLSF 425 (741)
T ss_dssp EEEEEEBTEEEEEEEET-----TEEEEEEEETTSCEEEECB-CSSSCEE---------------EEEECCBTCSCEEEEE
T ss_pred EEEEEECCEEEEEEEEC-----CEEEEEEEeCCCCceeecc-CCCCeEE---------------EEeecCCCCCEEEEEE
Confidence 22344588888876543 1235788887654444432 1111000 01111 33 344432
Q ss_pred C---CCCeEEEEeCCCCcEEEccC
Q 043540 347 H---EKEEVRKFDKGRKLWRTLGR 367 (437)
Q Consensus 347 g---~~~~v~~yd~~~~~W~~v~~ 367 (437)
. ....++.||..+++.+.+..
T Consensus 426 ss~~~P~~i~~~d~~tg~~~~l~~ 449 (741)
T 1yr2_A 426 SSFTQPATVLALDPATAKTTPWEP 449 (741)
T ss_dssp EETTEEEEEEEEETTTTEEEECSC
T ss_pred cCCCCCCEEEEEECCCCcEEEEec
Confidence 1 23579999999988776654
No 295
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=81.48 E-value=31 Score=31.38 Aligned_cols=62 Identities=15% Similarity=0.224 Sum_probs=35.1
Q ss_pred CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCC
Q 043540 228 GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETG 304 (437)
Q Consensus 228 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~ 304 (437)
++.+++.|+.+ ..+.++|..+++.... +.........+.+ +++..+.|+.+ ..+..||+...
T Consensus 87 ~~~~l~s~s~D------~~v~lwd~~~~~~~~~--~~~h~~~v~~v~~sp~~~~l~s~~~d-------~~i~~wd~~~~ 150 (343)
T 2xzm_R 87 ENCFAISSSWD------KTLRLWDLRTGTTYKR--FVGHQSEVYSVAFSPDNRQILSAGAE-------REIKLWNILGE 150 (343)
T ss_dssp STTEEEEEETT------SEEEEEETTSSCEEEE--EECCCSCEEEEEECSSTTEEEEEETT-------SCEEEEESSSC
T ss_pred CCCEEEEEcCC------CcEEEEECCCCcEEEE--EcCCCCcEEEEEECCCCCEEEEEcCC-------CEEEEEeccCC
Confidence 45566666654 5788999988764221 1111112222333 67677777765 34788888644
No 296
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=79.52 E-value=60 Score=33.43 Aligned_cols=185 Identities=11% Similarity=0.098 Sum_probs=91.4
Q ss_pred CCEEEEEcCcc---CCceEEEEECCCCceecCCCCCCCccceeeEEE--CCEEEEEeccCCCC--------CCCceEEEE
Q 043540 184 GTELLVFGKEV---HGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL--GEIAILAGGCDPRG--------KLLKSAELY 250 (437)
Q Consensus 184 ~~~lyv~GG~~---~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~--------~~~~~~~~y 250 (437)
+++.++++... ....++++|..+++..... . ....+..... +..||+ +..+... .....++++
T Consensus 173 DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~--~~~~~~~~~wspD~~l~~-~~~~~~~~~~~~~~~~~~~~v~~~ 248 (741)
T 1yr2_A 173 DGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-L--KWVKFSGLAWLGNDALLY-SRFAEPKEGQAFQALNYNQTVWLH 248 (741)
T ss_dssp TSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-E--EEEESCCCEESTTSEEEE-EECCCC--------CCCCCEEEEE
T ss_pred CCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-C--CCceeccEEEECCCEEEE-EEecCcccccccccCCCCCEEEEE
Confidence 55555554221 1247999999999875431 1 1111112222 423433 3332210 123567888
Q ss_pred ECCCCcE--EecCCCCc-CCcCeeEE-EECCEEEEEecccCCCCccCCeEEEEECCCC--c-eEecCCCCCcccCCCCcc
Q 043540 251 NSITGTW--MPISSMHK-ARKMCSGV-FMDGKFYVIGGIGEGSSAMLTDVEMYDLETG--K-WTQITDMFPARIGSDGVS 323 (437)
Q Consensus 251 d~~t~~W--~~~~~~~~-~r~~~~~~-~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~--~-W~~~~~~~~~~~~~~~~~ 323 (437)
+..++.- +.+-..+. +....+.. .-||+..++.... .......++.+|+.+. . |+.+..-......
T Consensus 249 ~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~--~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~----- 321 (741)
T 1yr2_A 249 RLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSE--GTDPVNTVHVARVTNGKIGPVTALIPDLKAQWD----- 321 (741)
T ss_dssp ETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEEC--TTCSCCEEEEEEEETTEECCCEEEECSSSSCEE-----
T ss_pred ECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEc--cCCCcceEEEEECCCCCCcccEEecCCCCceEE-----
Confidence 8776642 12212121 11122222 2267644443332 1112457889999877 6 8777532221111
Q ss_pred cccccCCCCCEEEEECCEEEEEeC---CCCeEEEEeCCC--CcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCC
Q 043540 324 VISAAGEAPPLLAVVNNELYAADH---EKEEVRKFDKGR--KLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGP 395 (437)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~ly~~gg---~~~~v~~yd~~~--~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~ 395 (437)
.+...++.||+... ....|+++|..+ ..|+.+..-.... . ..+...+++|++....
T Consensus 322 ----------~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~--l----~~~~~~~~~lv~~~~~ 382 (741)
T 1yr2_A 322 ----------FVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDN--L----ESVGIAGNRLFASYIH 382 (741)
T ss_dssp ----------EEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSE--E----EEEEEEBTEEEEEEEE
T ss_pred ----------EEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCe--E----EEEEEECCEEEEEEEE
Confidence 12335677877753 245799999988 5798875322111 1 1223347788777543
No 297
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=78.42 E-value=47 Score=31.52 Aligned_cols=65 Identities=8% Similarity=-0.022 Sum_probs=36.7
Q ss_pred CCEEEEEeC---------CCCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCC-EEEEEcCCCCCCCCeeEEEee
Q 043540 339 NNELYAADH---------EKEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGD-QLIVIGGPRDSGGGIVELNGW 408 (437)
Q Consensus 339 ~~~ly~~gg---------~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~-~l~v~GG~~~~~~~~~~~~~~ 408 (437)
+++||+.-. ..+.|+++|.++++-..--.++... +++++..-+. +||+..+.. + .+.
T Consensus 291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~-----~~lavs~D~~~~ly~tn~~~----~----~Vs 357 (386)
T 3sjl_D 291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEI-----DSINVSQDEKPLLYALSTGD----K----TLY 357 (386)
T ss_dssp TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEE-----CEEEECSSSSCEEEEEETTT----T----EEE
T ss_pred CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCc-----ceEEECCCCCeEEEEEcCCC----C----eEE
Confidence 589999732 1367999999997754432232222 3555433343 577764422 1 245
Q ss_pred ecCCCCCC
Q 043540 409 VPDEGPPH 416 (437)
Q Consensus 409 ~~d~~~~~ 416 (437)
++|..+.+
T Consensus 358 ViD~~t~k 365 (386)
T 3sjl_D 358 IHDAESGE 365 (386)
T ss_dssp EEETTTCC
T ss_pred EEECCCCc
Confidence 56766554
No 298
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=78.40 E-value=68 Score=33.40 Aligned_cols=258 Identities=16% Similarity=0.170 Sum_probs=123.1
Q ss_pred EEEEEecCceEEEeccCCCCeeeCCC-C-----CCcc-ccccCCceeEEe----CCEEEEEcCc----cCCceEEEEECC
Q 043540 141 WVYFSCKLKEWEAFDPIHHRWMHLPP-M-----NASD-CFMCADKESLAV----GTELLVFGKE----VHGNAIYRYNLL 205 (437)
Q Consensus 141 ~l~~~~~~~~~~~yDp~~~~W~~l~~-~-----p~~~-~~~~~~~~~~~~----~~~lyv~GG~----~~~~~v~~yd~~ 205 (437)
.+|+.....-++.-+-.-.+|..+.. + +... .... ...+++ .+.+|+..|. .....+++-.-.
T Consensus 35 ~~y~~~~~ggv~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~--~~~ia~dp~~~~~~~~~~g~~~~~~~~~~i~~S~Dg 112 (763)
T 3a0f_A 35 LIYARTDIGGTYRWNAAKWEWEPITDFIINNALAGNGANLLG--TESIALDPHNPDRLYLAQGDYVQWDPWAAFLVSDDR 112 (763)
T ss_dssp CEEEEESSSCEEEEETTTTEEEESCTTCBTTCSSSCCCCCCS--EEEEECCTTCTTCEEEEECSCTTTCSCCEEEEESST
T ss_pred EEEEEeccCcEEEECCCCCCeeECccCccccccCCCcccccc--eeEEEECCCCCCEEEEEecccccCCCCceEEEECCC
Confidence 34554444556666667779998765 3 2110 1111 111222 3578886442 112345544444
Q ss_pred CCceecCCC-CC-----CCccc-eeeEEE---CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCC---cCeeE
Q 043540 206 TNTWSTGMT-MN-----TPRCL-FGSASL---GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKAR---KMCSG 272 (437)
Q Consensus 206 t~~W~~~~~-~~-----~~r~~-~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r---~~~~~ 272 (437)
-.+|+++.. .+ ..|.. +.+++. .+.+|+.+. . ..+++=+=.-.+|+.+..++... .....
T Consensus 113 G~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~-~------~~l~~S~DgG~TW~~~~~~~~~~~~~~~~~~ 185 (763)
T 3a0f_A 113 GKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSR-T------QGLWRSTDRAQTWSRMNQLPDSSTYGIGIIS 185 (763)
T ss_dssp TSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECS-S------SCEEEESSTTSSCEECTTSCCCSCTTTCEEE
T ss_pred CCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeC-C------CcEEEECCCCcCccccccCcccCCCccceEE
Confidence 568998752 11 11221 234443 357777531 1 22222111235799998766432 22333
Q ss_pred EEE----CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccc------cCCCCCEEEEE-CCE
Q 043540 273 VFM----DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISA------AGEAPPLLAVV-NNE 341 (437)
Q Consensus 273 ~~~----~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~ 341 (437)
+.+ .+.+|+..... . .+++=+-.-.+|+.+...+.....++-.+..|. .+..++.+++. ++.
T Consensus 186 i~~~p~~~~~~~~~~~~~---g----~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~ 258 (763)
T 3a0f_A 186 VIFDPKNVGTAYVASHAV---G----GLWVTWDGGANWSQVGGQPTQWSDWTKSIVAASGTAIQSSGPLPIKIALGKNGR 258 (763)
T ss_dssp EEECSSSTTCEEEEESST---T----CEEEESSSSSSCEECTTCCCSCCHHHHHHHHHHCCCCSSSSCEEEEEEECTTSC
T ss_pred EEECCCCCCEEEEEEeCC---C----eEEEECCCCCCccccCCCccccccccccccccccccccCCCCcceeEEECCCCc
Confidence 344 24688764321 0 233333334579998755422100000000000 00011222222 688
Q ss_pred EEEEe--------CCCCeEEEEeCCCCcEEEccCCCCcccC-----------CCcccEEEEEe-CCEEEEEcCCCCCCCC
Q 043540 342 LYAAD--------HEKEEVRKFDKGRKLWRTLGRLPEQASS-----------MNGWGLAFRAC-GDQLIVIGGPRDSGGG 401 (437)
Q Consensus 342 ly~~g--------g~~~~v~~yd~~~~~W~~v~~lp~~~~~-----------~~~~~~a~~~~-~~~l~v~GG~~~~~~~ 401 (437)
||+.. +....+++.+-...+|+.+..++..... ..++. ++++. .+.||+.+....
T Consensus 259 l~~~~~~~~~~~~~~~g~v~rS~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~gg~~-~i~v~~~~~v~~~~~~~~---- 333 (763)
T 3a0f_A 259 LYITYSDAPGPWGVLYGEVWSYDPTNGNWKHITPSREGANTYPAPTGNKKVVPGGWN-GISVGNGDTVVVSTLDAN---- 333 (763)
T ss_dssp EEEEEESSCSSSCCCCEEEEEEETTTTEEEECCTTSSSSCEESCCCCCTTSCCCEEE-EEEECSTBCEEEEEESCT----
T ss_pred EEEEeccCCCCCCCcceeEEEEeCCCCceEECCCCCCCCccccccccccccccCCce-eEEEcCCCeEEEEecCCC----
Confidence 99883 3456899999999999999765542110 00121 22232 356777764211
Q ss_pred eeEEEeeecCCCCCCceec
Q 043540 402 IVELNGWVPDEGPPHWKLL 420 (437)
Q Consensus 402 ~~~~~~~~~d~~~~~W~~l 420 (437)
.+..+++-.....+|+.+
T Consensus 334 -~~~~l~~S~DgG~tW~~~ 351 (763)
T 3a0f_A 334 -GEDSVYLSRDAGNSWKDL 351 (763)
T ss_dssp -TSCCEEEESBTTSSEEEH
T ss_pred -CCCCEEEECCCCCCcccC
Confidence 113355555567788877
No 299
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=78.28 E-value=22 Score=35.94 Aligned_cols=222 Identities=11% Similarity=0.009 Sum_probs=114.3
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEE----CCEEEEEeccCC----C-------CCCCceEE
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASL----GEIAILAGGCDP----R-------GKLLKSAE 248 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~----~~~iyv~GG~~~----~-------~~~~~~~~ 248 (437)
|..+||-- ...+.+.+.|+.+.+=..+-.+|....-|+.+.. ++++|+.+.+.. . ..+.+.+-
T Consensus 101 G~~lfVnd--~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 101 GRFLFMND--KANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEE--TTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred CCEEEEEc--CCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 45677743 3456799999999875554356655556776653 578888864311 1 12345788
Q ss_pred EEECCCCc--EEecCCCCcCCcCeeEEEECC-EEEEEeccc------------------------------CCCCccCCe
Q 043540 249 LYNSITGT--WMPISSMHKARKMCSGVFMDG-KFYVIGGIG------------------------------EGSSAMLTD 295 (437)
Q Consensus 249 ~yd~~t~~--W~~~~~~~~~r~~~~~~~~~g-~lyv~GG~~------------------------------~~~~~~~~~ 295 (437)
+.|.++.+ |+..-.- .-....+..+| .+|+..-.. .+.....+.
T Consensus 179 vID~~t~~v~~qI~Vgg---~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~ 255 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG---NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG 255 (595)
T ss_dssp EEETTTTEEEEEEEESS---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred EEECCCCeEEEEEEeCC---CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence 89999875 5533111 11111222233 233332111 011112344
Q ss_pred EEEEECCCCceEe-cCCCCCcccCCCCcccccccCCCCCEEEEE-CC-EEEEEeCCCCeEEEEeCCCCc-E---------
Q 043540 296 VEMYDLETGKWTQ-ITDMFPARIGSDGVSVISAAGEAPPLLAVV-NN-ELYAADHEKEEVRKFDKGRKL-W--------- 362 (437)
Q Consensus 296 v~~yd~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~ly~~gg~~~~v~~yd~~~~~-W--------- 362 (437)
+-+.|..+.+... +..+|.+. .++++.+- || .+|+.+...+.|.+||.++.+ +
T Consensus 256 V~VID~~~~~~~~~~~~Ipvg~--------------~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~ 321 (595)
T 1fwx_A 256 VKVVDGRKEASSLFTRYIPIAN--------------NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS 321 (595)
T ss_dssp EEEEECSGGGCCSSEEEEEEES--------------SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGG
T ss_pred EEEEeCcccCCceeEEEEecCC--------------CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCccc
Confidence 6666766632222 11222222 22445553 44 577777788999999998652 1
Q ss_pred EEccCCCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCCC------CCCceecCccCCCce-EeeeEE
Q 043540 363 RTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDEG------PPHWKLLARQPMCGF-VFNCTV 434 (437)
Q Consensus 363 ~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~~------~~~W~~l~~~p~~~~-~~~~~v 434 (437)
..+..++..... ++.++.. ++.+|+.--.+ ..+.+|.++.. ...+..+..++.+-- +|.++-
T Consensus 322 ~v~~~v~vG~gP---~h~aF~~-dG~aY~t~~ld------sqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~ 390 (595)
T 1fwx_A 322 AVVAEPELGLGP---LHTAFDG-RGNAYTSLFLD------SQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTV 390 (595)
T ss_dssp GEEECCBCCSCE---EEEEECT-TSEEEEEETTT------TEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEET
T ss_pred ceEEEcCCCCCc---ceEEECC-CCeEEEEEecC------CcEEEEEhhHhhhhhcccccceeEEEeecccccccceec
Confidence 112222222211 3455533 34888875433 34666877651 234677776665433 444443
No 300
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=76.49 E-value=65 Score=32.19 Aligned_cols=152 Identities=13% Similarity=0.124 Sum_probs=81.0
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceec-CCC--C---CCCccceeeEEE-CCEEEEEeccCCCCCCCceEEEEECCCCc
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWST-GMT--M---NTPRCLFGSASL-GEIAILAGGCDPRGKLLKSAELYNSITGT 256 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~-~~~--~---~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 256 (437)
++.+++.|+.. ..+.+||..+++-.. +.. + .....-.+++.. +++.++.|+.+ ..+.++|..+.+
T Consensus 201 dg~~las~s~D--~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D------~~v~lWd~~~~~ 272 (611)
T 1nr0_A 201 DGSLFASTGGD--GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD------KTIKIWNVATLK 272 (611)
T ss_dssp TSSEEEEEETT--SCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTTE
T ss_pred CCCEEEEEECC--CcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCC------CeEEEEeCCCCc
Confidence 56666666533 468889987765432 211 0 111111122222 56677777754 578899998877
Q ss_pred EEecCCCCc-CCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEE
Q 043540 257 WMPISSMHK-ARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLL 335 (437)
Q Consensus 257 W~~~~~~~~-~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (437)
....-.... .......+..++...+.++.+ ..+..||+.+.+-...- .+|...+ ..+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d-------~~i~~~~~~~~~~~~~~------~gh~~~v---------~~l 330 (611)
T 1nr0_A 273 VEKTIPVGTRIEDQQLGIIWTKQALVSISAN-------GFINFVNPELGSIDQVR------YGHNKAI---------TAL 330 (611)
T ss_dssp EEEEEECCSSGGGCEEEEEECSSCEEEEETT-------CCEEEEETTTTEEEEEE------CCCSSCE---------EEE
T ss_pred eeeeecCCCCccceeEEEEEcCCEEEEEeCC-------CcEEEEeCCCCCcceEE------cCCCCCE---------EEE
Confidence 643221111 111223344466666666654 24777888766422211 1110000 112
Q ss_pred EE-ECCEEEEEeCCCCeEEEEeCCCCcEEEc
Q 043540 336 AV-VNNELYAADHEKEEVRKFDKGRKLWRTL 365 (437)
Q Consensus 336 ~~-~~~~ly~~gg~~~~v~~yd~~~~~W~~v 365 (437)
+. -+++.++.++..+.|..||..+..-..+
T Consensus 331 ~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~ 361 (611)
T 1nr0_A 331 SSSADGKTLFSADAEGHINSWDISTGISNRV 361 (611)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCEEEC
T ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCceeee
Confidence 22 2677777777778899999998776554
No 301
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=76.24 E-value=64 Score=32.74 Aligned_cols=62 Identities=15% Similarity=-0.037 Sum_probs=34.0
Q ss_pred ceEEEEECCCCc-EEecCCCCcC---CcCeeEEE--ECCEEEEEecccCCCCccCCeEEEEECCCCceEec
Q 043540 245 KSAELYNSITGT-WMPISSMHKA---RKMCSGVF--MDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQI 309 (437)
Q Consensus 245 ~~~~~yd~~t~~-W~~~~~~~~~---r~~~~~~~--~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~ 309 (437)
..+.++|..+++ -..+...... ......+. -||++.+..... ......++.+|+.+++...+
T Consensus 228 ~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~---~~~~~~i~~~d~~~g~~~~~ 295 (723)
T 1xfd_A 228 ISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNR---AQNVSILTLCDATTGVCTKK 295 (723)
T ss_dssp EEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEET---TSCEEEEEEEETTTCCEEEE
T ss_pred eEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcC---CCCeEEEEEEeCCCCcceEE
Confidence 378899998876 3444322111 11112222 278866554332 12234688899998876554
No 302
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=76.05 E-value=33 Score=34.99 Aligned_cols=58 Identities=0% Similarity=-0.187 Sum_probs=32.5
Q ss_pred ceEEEEECCCCceecCCCCCCC--ccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecC
Q 043540 197 NAIYRYNLLTNTWSTGMTMNTP--RCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPIS 261 (437)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~~~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 261 (437)
..++++|..+++-+.+...... +......+-+++.++++.. ..++++|..++.-..+.
T Consensus 91 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-------~~i~~~~~~~g~~~~~~ 150 (723)
T 1xfd_A 91 GYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-------NNIYYCAHVGKQAIRVV 150 (723)
T ss_dssp SEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-------TEEEEESSSSSCCEEEE
T ss_pred eeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-------CeEEEEECCCCceEEEe
Confidence 6799999998876655433221 1112222334544444331 36888888877665543
No 303
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=75.85 E-value=49 Score=30.43 Aligned_cols=170 Identities=15% Similarity=0.109 Sum_probs=77.1
Q ss_pred ceEEEEECC-CCcEEecCCCC--cCCcCeeEEEE--CC-EEEEEecccCCCCccCCeEEEE--ECCCCceE----ecCCC
Q 043540 245 KSAELYNSI-TGTWMPISSMH--KARKMCSGVFM--DG-KFYVIGGIGEGSSAMLTDVEMY--DLETGKWT----QITDM 312 (437)
Q Consensus 245 ~~~~~yd~~-t~~W~~~~~~~--~~r~~~~~~~~--~g-~lyv~GG~~~~~~~~~~~v~~y--d~~~~~W~----~~~~~ 312 (437)
+.+.+||.. +++.+.+.... ..-.....+.+ +| .+|+.+... +.+.+| |..+++.. .+..+
T Consensus 167 ~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~-------~~v~v~~~~~~~g~~~~~~~~~~~~ 239 (365)
T 1jof_A 167 NKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAG-------NRICEYVIDPATHMPVYTHHSFPLI 239 (365)
T ss_dssp TEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTT-------TEEEEEEECTTTCCEEEEEEEEESS
T ss_pred CEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCC-------CeEEEEEEeCCCCcEEEccceEEcC
Confidence 578899988 77765443222 11122222223 55 567764322 235555 55566543 34444
Q ss_pred CCcccCCCCcccccccCCCCCEEE-E-ECC-EEEEEeCCCC-----eEEEEeCC-CCcEEEccC-CCCcccCCCcccEEE
Q 043540 313 FPARIGSDGVSVISAAGEAPPLLA-V-VNN-ELYAADHEKE-----EVRKFDKG-RKLWRTLGR-LPEQASSMNGWGLAF 382 (437)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~-~ly~~gg~~~-----~v~~yd~~-~~~W~~v~~-lp~~~~~~~~~~~a~ 382 (437)
+....++..... + ...+..++ . -+| .||+.....+ .|.+|+.. +++...+.. .+.... ...+.++
T Consensus 240 ~~~~~g~~~~~~-~--~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~--~~~~~a~ 314 (365)
T 1jof_A 240 PPGIPDRDPETG-K--GLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS--GGHSNAV 314 (365)
T ss_dssp CTTCCCBCTTTS-S--BSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC--CTTCCCE
T ss_pred CCCcCCcccccc-c--ccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCC--Cccccee
Confidence 433211000000 0 00001233 2 245 4666542223 78899875 566554221 111111 0123444
Q ss_pred EE---eCCEEEEEcCCCCCCCCeeEEEeeecCCCCCCceecC--ccCCCceEeeeEE
Q 043540 383 RA---CGDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKLLA--RQPMCGFVFNCTV 434 (437)
Q Consensus 383 ~~---~~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~l~--~~p~~~~~~~~~v 434 (437)
.. -++.||+.+... ..+.+|..|.. .-+.++ ..|.+.+.-+|+.
T Consensus 315 sp~~~dg~~l~v~~~~~------~~v~v~~~~~~--~l~~~~~~~~~~p~~~~~~~~ 363 (365)
T 1jof_A 315 SPCPWSDEWMAITDDQE------GWLEIYRWKDE--FLHRVARVRIPEPGFGMNAIW 363 (365)
T ss_dssp EECTTCTTEEEEECSSS------CEEEEEEEETT--EEEEEEEEECCSTTEEEEEEE
T ss_pred cCCCcCCCEEEEEEcCC------CeEEEEEEchh--hCceeeEEEcCCCcceeeeEe
Confidence 44 356777765321 34677777754 223333 3466666666654
No 304
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=74.34 E-value=11 Score=37.99 Aligned_cols=179 Identities=15% Similarity=0.061 Sum_probs=91.6
Q ss_pred CceEEEEECCCCcEEe-cCCCCcCCcCeeEEEE-CCE-EEEEecccCCCCccCCeEEEEECCCCc-eEecCCCCCcccCC
Q 043540 244 LKSAELYNSITGTWMP-ISSMHKARKMCSGVFM-DGK-FYVIGGIGEGSSAMLTDVEMYDLETGK-WTQITDMFPARIGS 319 (437)
Q Consensus 244 ~~~~~~yd~~t~~W~~-~~~~~~~r~~~~~~~~-~g~-lyv~GG~~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~~~~~ 319 (437)
.+.+-+.|..+.+.+. +...|.+..-|++.+- ||+ +|+.+.. .+.+.+||..+.+ +.. ..+ .++..
T Consensus 253 i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~-------s~~VsVid~~~~~~~~~-~~l-~~~~~- 322 (595)
T 1fwx_A 253 LNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKL-------SPTVTVLDVTRFDAVFY-ENA-DPRSA- 322 (595)
T ss_dssp ETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTT-------SSBEEEEEGGGHHHHHH-SCC-CGGGG-
T ss_pred ECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCC-------CCeEEEEECcccccccc-ccc-Ccccc-
Confidence 4568888988843333 2344555555665554 666 5554433 3568999998642 100 000 00000
Q ss_pred CCcccccccCCCC-CEEEEECCEEEEEeCCCCeEEEEeCCC--------CcEEEccCCCCcccCC-C--cccEEEEEeCC
Q 043540 320 DGVSVISAAGEAP-PLLAVVNNELYAADHEKEEVRKFDKGR--------KLWRTLGRLPEQASSM-N--GWGLAFRACGD 387 (437)
Q Consensus 320 ~~~~~~~~~~~~~-~~~~~~~~~ly~~gg~~~~v~~yd~~~--------~~W~~v~~lp~~~~~~-~--~~~~a~~~~~~ 387 (437)
.+..++ .|..+ +....-+|.+|+.-...+.|.+||.++ +.+..+..++...... . ..+.+...-|.
T Consensus 323 -v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk 400 (595)
T 1fwx_A 323 -VVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATND 400 (595)
T ss_dssp -EEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSS
T ss_pred -eEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCC
Confidence 000000 11111 222223578898877778899999876 3366665555432210 0 01111223356
Q ss_pred EEEEEcCCCCC-----CCCeeEEEeeecCCCCCCceecCccCCCceEeeeEEe
Q 043540 388 QLIVIGGPRDS-----GGGIVELNGWVPDEGPPHWKLLARQPMCGFVFNCTVM 435 (437)
Q Consensus 388 ~l~v~GG~~~~-----~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~v~ 435 (437)
.||+.-+.... |-...+.. -.+|.+..+-+.+...|.+...|.+++.
T Consensus 401 ~l~~~Nk~skdr~~~~gp~~~~~~-ql~dis~~~m~lv~d~p~~~ePh~~~i~ 452 (595)
T 1fwx_A 401 WLVCLSKFSKDRFLNVGPLKPEND-QLIDISGDKMVLVHDGPTFAEPHDAIAV 452 (595)
T ss_dssp EEEEEESCCTTSSCCCCSSCCEEE-EEEECSSSSCEEEEEEEESSCCCCEEEE
T ss_pred EEEEcCCCCccccccCCCCCCCcc-eEEEcCCCcEEEEEEEcCCCCCCceEEc
Confidence 77777654421 11112222 3367778888888888877766777654
No 305
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A
Probab=74.21 E-value=24 Score=30.75 Aligned_cols=101 Identities=11% Similarity=0.021 Sum_probs=57.1
Q ss_pred eCCEEEEEcCccCCceEEEEE--CC-------------CCceecCCCCCCCccceeeEEE--CCEEEEEeccCCCCCCCc
Q 043540 183 VGTELLVFGKEVHGNAIYRYN--LL-------------TNTWSTGMTMNTPRCLFGSASL--GEIAILAGGCDPRGKLLK 245 (437)
Q Consensus 183 ~~~~lyv~GG~~~~~~v~~yd--~~-------------t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~ 245 (437)
.++++|+|-| +.+|+|+ +. +..|..++.-..+..--++... ++++|++-| +
T Consensus 71 ~~g~~~fFKg----~~~Wr~~~~~~~~~~~~~~gP~~I~~~w~gLp~~~~p~~IDAA~~~~~~~k~yfFkG--------~ 138 (227)
T 3lp9_A 71 ENNEAFIFYE----NFCALIDYAPHSKKDKIILGPKKIADVFPFFEGTVFESGIDAAYRSTRGKEVYLFKG--------D 138 (227)
T ss_dssp STTEEEEEET----TEEEEEECCTTTCCCEEEEEEEEHHHHSGGGTTSTTTTCCSEEEECSSTTEEEEEET--------T
T ss_pred CCCEEEEEeC----CEEEEEeCCCCccccccccCceEHhhhcCCCCCccCCCcccEEEEECCCCEEEEEEC--------C
Confidence 6899999965 4678888 32 1223333311012111222222 589999987 5
Q ss_pred eEEEEECCCCcEEe-----cC-CCCcCC-----cCeeEEEE---CCEEEEEecccCCCCccCCeEEEEECCCC
Q 043540 246 SAELYNSITGTWMP-----IS-SMHKAR-----KMCSGVFM---DGKFYVIGGIGEGSSAMLTDVEMYDLETG 304 (437)
Q Consensus 246 ~~~~yd~~t~~W~~-----~~-~~~~~r-----~~~~~~~~---~g~lyv~GG~~~~~~~~~~~v~~yd~~~~ 304 (437)
..|+||..+++-.. +. .+|... ...-+++. +|++|++-|.. .+.||..++
T Consensus 139 ~yw~~d~~~~~~~~gyPk~i~~g~p~~~~~g~p~~iDAA~~~~~~g~~YfFkg~~---------Ywr~d~~~~ 202 (227)
T 3lp9_A 139 QYARIDYGSNSMVNKEIKSISSGYPCFRNTIFESGADAAFASHKTNEVYFFKDDH---------YARVKVTPX 202 (227)
T ss_dssp EEEEEETTTTEESSSSCEEHHHHCGGGTTSGGGGCCSEEEECSSTTEEEEEETTE---------EEEEECCSS
T ss_pred EEEEEeCCCccccCCCCeEHHHCCCCccccccCCCccEEEEcCCCceEEEEECCE---------EEEEECCcc
Confidence 68999987653211 10 122111 12223443 58999998765 888998876
No 306
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=73.15 E-value=56 Score=29.84 Aligned_cols=52 Identities=12% Similarity=0.224 Sum_probs=34.5
Q ss_pred ECCEEEEEeCCCCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEE-eCCEEEEEcC
Q 043540 338 VNNELYAADHEKEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRA-CGDQLIVIGG 394 (437)
Q Consensus 338 ~~~~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~-~~~~l~v~GG 394 (437)
-+|.||+.....+.|.+||+++.+...+...+... +-.+++. -+++|||...
T Consensus 257 ~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~-----~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 257 KDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLS-----WTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp TTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGS-----CEEEEEECTTSCEEEEEC
T ss_pred CCCCEEEEccCCCeEEEEECCCCCEEEEEECCcee-----cCCeeEECCCCcEEEEeC
Confidence 47899999887889999999667777665443111 1122222 3578998865
No 307
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=70.65 E-value=94 Score=31.42 Aligned_cols=170 Identities=14% Similarity=0.064 Sum_probs=96.0
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEE--ECCEEEEEeccCCCCCCCceEEEEECCCCcEEecC
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSAS--LGEIAILAGGCDPRGKLLKSAELYNSITGTWMPIS 261 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 261 (437)
++.||+.- .....++++++.......+..-.. ..-.++++ .++.||+.-. ....+++.++....-+.+.
T Consensus 360 ~~~ly~sD--~~~~~I~r~~~~g~~~~~v~~~~~-~~p~GlAvD~~~~~lY~tD~------~~~~I~v~~~~G~~~~~l~ 430 (619)
T 3s94_A 360 EGYIYWTD--DEVRAIRRSFIDGSGSQFVVTAQI-AHPDGIAVDWVARNLYWTDT------GTDRIEVTRLNGTMRKILI 430 (619)
T ss_dssp TTEEEEEE--TTTTEEEEEETTSCSCEEEECSSC-SCCCEEEEETTTTEEEEEET------TTTEEEEEETTSCSCEEEE
T ss_pred CCeEEEEe--CCCCeEEEEEcCCCccEEEEECCC-CCcCceEEecccCcEEEEeC------CCCcEEEEeCCCCeEEEEE
Confidence 57888873 234678999987765554432111 11124555 4789999842 1368899988765444432
Q ss_pred CCCcCCcCeeEEEE---CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE
Q 043540 262 SMHKARKMCSGVFM---DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV 338 (437)
Q Consensus 262 ~~~~~r~~~~~~~~---~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (437)
.- ......++++ +|.||+.--.. ...+++.++.-..=+.+..- .. .+|.++++-
T Consensus 431 ~~--~l~~P~~iavdp~~G~ly~tD~g~------~~~I~r~~~dG~~~~~l~~~--~l-------------~~P~GlalD 487 (619)
T 3s94_A 431 SE--DLEEPRAIVLDPMVGYMYWTDWGE------IPKIERAALDGSDRVVLVNT--SL-------------GWPNGLALD 487 (619)
T ss_dssp CT--TCCSEEEEEEETTTTEEEEEECSS------SCEEEEEETTSCSCEEEECS--SC-------------SCEEEEEEE
T ss_pred EC--CCCCeeeEEEEcCCCcEEEecCCC------CCEEEEEccCCCccEEEEeC--CC-------------CCCeeeEEc
Confidence 11 1122333333 58999974111 23577777754322222110 00 112345554
Q ss_pred --CCEEEEEeCCCCeEEEEeCCCCcEEEcc--CCCCcccCCCcccEEEEEeCCEEEEEc
Q 043540 339 --NNELYAADHEKEEVRKFDKGRKLWRTLG--RLPEQASSMNGWGLAFRACGDQLIVIG 393 (437)
Q Consensus 339 --~~~ly~~gg~~~~v~~yd~~~~~W~~v~--~lp~~~~~~~~~~~a~~~~~~~l~v~G 393 (437)
+++||+.+.....|+++++....=+.+. .++.+ +|.+ +.++.||+.-
T Consensus 488 ~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~P------~gla--v~~~~ly~tD 538 (619)
T 3s94_A 488 YDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHI------FGFT--LLGDYVYWTD 538 (619)
T ss_dssp TTTTEEEEEETTTTEEEEEESSSCCCEEEEECCCCSS------CCEE--EETTEEEEEC
T ss_pred ccCCEEEEEECCCCEEEEEecCCCceEEEeccCCCCc------EEEE--EECCEEEEee
Confidence 6899999988889999998654333332 23222 3444 5788999985
No 308
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=70.05 E-value=1.2e+02 Score=32.54 Aligned_cols=108 Identities=6% Similarity=-0.056 Sum_probs=57.0
Q ss_pred ceEEEeccCCCCeeeCCCCCCccccccCCceeEEeCCEEEEEcCc----cCCceEEEEECCCCceecCCCCCCCc---c-
Q 043540 149 KEWEAFDPIHHRWMHLPPMNASDCFMCADKESLAVGTELLVFGKE----VHGNAIYRYNLLTNTWSTGMTMNTPR---C- 220 (437)
Q Consensus 149 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~----~~~~~v~~yd~~t~~W~~~~~~~~~r---~- 220 (437)
.+++.+|...++-..+...+.... ....+-+|+.+++... .....++++|..+++-+.+...+... .
T Consensus 33 ~~l~~~~~~gg~~~~lt~~~~~v~-----~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~ 107 (1045)
T 1k32_A 33 DDLWEHDLKSGSTRKIVSNLGVIN-----NARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRM 107 (1045)
T ss_dssp TEEEEEETTTCCEEEEECSSSEEE-----EEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEE
T ss_pred CcEEEEECCCCcEEEeeeCCCccc-----CeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCccccccc
Confidence 578888888777666543222111 1112335655555432 23357999999888766664322111 0
Q ss_pred ceeeEEE--CCEEEEEeccCCCCCCCceEEEEECCCCcEEecC
Q 043540 221 LFGSASL--GEIAILAGGCDPRGKLLKSAELYNSITGTWMPIS 261 (437)
Q Consensus 221 ~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 261 (437)
......+ ++++++.+..+........++.+|..++.-+.+.
T Consensus 108 ~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~ 150 (1045)
T 1k32_A 108 FTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN 150 (1045)
T ss_dssp CSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC
T ss_pred ccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEec
Confidence 0122222 5666666554322222356888888777665554
No 309
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=69.34 E-value=69 Score=29.31 Aligned_cols=62 Identities=8% Similarity=0.069 Sum_probs=35.4
Q ss_pred CCEEEEEeCCCCe-EEEEeCCCCcEEEccC---CCCcccCCCcccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeecCC
Q 043540 339 NNELYAADHEKEE-VRKFDKGRKLWRTLGR---LPEQASSMNGWGLAFRACGDQLIVIGGPRDSGGGIVELNGWVPDE 412 (437)
Q Consensus 339 ~~~ly~~gg~~~~-v~~yd~~~~~W~~v~~---lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~d~ 412 (437)
++++++.|+..+. |.+||..+.+-...-. ..... ...++ .-++++++.|+.+ ..+.+|.++.
T Consensus 206 ~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v-----~~~~~-s~~~~~l~s~s~d------~~v~iw~~~~ 271 (355)
T 3vu4_A 206 KSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADV-----VDMKW-STDGSKLAVVSDK------WTLHVFEIFN 271 (355)
T ss_dssp TSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCE-----EEEEE-CTTSCEEEEEETT------CEEEEEESSC
T ss_pred CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcE-----EEEEE-CCCCCEEEEEECC------CEEEEEEccC
Confidence 6777777777777 9999998765432211 11111 11222 2246777777654 2467787643
No 310
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=69.34 E-value=89 Score=32.37 Aligned_cols=108 Identities=8% Similarity=-0.052 Sum_probs=57.1
Q ss_pred EEEEEcCccCCceEEEEECCCC--ce--ecCCCCCCCccceeeE-EECCEEEEEeccCCCCCCCceEEEEECCC-CcEEe
Q 043540 186 ELLVFGKEVHGNAIYRYNLLTN--TW--STGMTMNTPRCLFGSA-SLGEIAILAGGCDPRGKLLKSAELYNSIT-GTWMP 259 (437)
Q Consensus 186 ~lyv~GG~~~~~~v~~yd~~t~--~W--~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~t-~~W~~ 259 (437)
.|++.......+.++++|..+. .+ +.+.+-... ..+... ..++.+|+....++. ....++.+|..+ ..|+.
T Consensus 284 ~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~-~~~s~~~~~g~~l~~~t~~~~a--~~~~L~~~d~~~~~~~~~ 360 (751)
T 2xe4_A 284 TLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKG-VRYDVQMHGTSHLVILTNEGGA--VNHKLLIAPRGQPSDWSH 360 (751)
T ss_dssp EEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTT-CCEEEEEETTTEEEEEECTTTC--TTCEEEEEETTSTTCCCC
T ss_pred EEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCC-ceEEEeeeeCCEEEEEeCCCCC--CCcEEEEEcCCCccccee
Confidence 3444333334568999998775 45 555322111 112222 237788888654311 236788899876 67876
Q ss_pred -cCCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEEC
Q 043540 260 -ISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDL 301 (437)
Q Consensus 260 -~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~ 301 (437)
+-.-............++.|++....+ ....++.+|+
T Consensus 361 ~li~~~~~~~l~~~~~~~~~lv~~~~~~-----g~~~l~~~dl 398 (751)
T 2xe4_A 361 VLVDHSEDVFMESIAVRSNYLVVAGRRA-----GLTRIWTMMA 398 (751)
T ss_dssp EEECCCSSEEEEEEEECSSEEEEEEEET-----TEEEEEEEEC
T ss_pred eEECCCCCcEEEEEEEECCEEEEEEEeC-----CEEEEEEEec
Confidence 322111111122333467777765433 1345888886
No 311
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=68.68 E-value=76 Score=29.59 Aligned_cols=96 Identities=11% Similarity=0.007 Sum_probs=48.8
Q ss_pred eEEEeccCCCCeeeCCCCCCccccccCCceeEEe-CCEEEEEcCc-------cCCceEEEEECCCCceecCCCCC-CCc-
Q 043540 150 EWEAFDPIHHRWMHLPPMNASDCFMCADKESLAV-GTELLVFGKE-------VHGNAIYRYNLLTNTWSTGMTMN-TPR- 219 (437)
Q Consensus 150 ~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~lyv~GG~-------~~~~~v~~yd~~t~~W~~~~~~~-~~r- 219 (437)
.+..||+.+.+-. ..++..... +..++- +..+|+.... ...+.+.+||+.|.+-..--+++ .+|
T Consensus 48 ~v~v~D~~t~~~~--~~i~~g~~p----~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~ 121 (373)
T 2mad_H 48 QQWVLDAGSGSIL--GHVNGGFLP----NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRF 121 (373)
T ss_pred EEEEEECCCCeEE--EEecCCCCC----CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcccc
Confidence 6788999877643 233322211 111222 5578887421 12457889999875432111111 111
Q ss_pred ----cceeeEE--ECCEEEEEeccCCCCCCCceEEEEECCCCcE
Q 043540 220 ----CLFGSAS--LGEIAILAGGCDPRGKLLKSAELYNSITGTW 257 (437)
Q Consensus 220 ----~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W 257 (437)
.-...+. -+..+|+..-. ..+.+.++| ++++-
T Consensus 122 ~~g~~p~~~~~spDG~~l~v~n~~-----~~~~v~viD-~t~~~ 159 (373)
T 2mad_H 122 DVGPYSWMNANTPNNADLLFFQFA-----AGPAVGLVV-QGGSS 159 (373)
T ss_pred ccCCCccceEECCCCCEEEEEecC-----CCCeEEEEE-CCCCE
Confidence 1112222 25678877321 136789999 88764
No 312
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=67.10 E-value=1.3e+02 Score=31.50 Aligned_cols=217 Identities=12% Similarity=0.053 Sum_probs=104.4
Q ss_pred CEEEEEcCccCCceEEEEECCCCceecCCCCCC-----CccceeeEEE---CCEEEEEeccCCCCCCCceEEEEECCCCc
Q 043540 185 TELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNT-----PRCLFGSASL---GEIAILAGGCDPRGKLLKSAELYNSITGT 256 (437)
Q Consensus 185 ~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~-----~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 256 (437)
+.+|+-+ ....+++-+-.-.+|+.+...+. .+...++++- .+.+|+..|....... ..+++=+=.-.+
T Consensus 28 ~~~~a~~---~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~-~~v~~S~DgG~T 103 (789)
T 1sqj_A 28 DLLYART---DIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW-AAFYVSEDRGQS 103 (789)
T ss_dssp TCEEEEE---SSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC-CEEEEESSTTSE
T ss_pred CEEEEEe---cCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcc-cEEEEECCCCCc
Confidence 4566643 22357777777889998765321 1222333333 2568887663211111 222222222356
Q ss_pred EEecCCC-C-----cCC-cCeeEEEE---CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCccccc
Q 043540 257 WMPISSM-H-----KAR-KMCSGVFM---DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVIS 326 (437)
Q Consensus 257 W~~~~~~-~-----~~r-~~~~~~~~---~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~ 326 (437)
|+.+... + ..| .....++. .+.+|+. ... ..+++=+-.-.+|+.+..++.....
T Consensus 104 W~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g-~~~-------~gl~~S~DgG~TW~~~~~~~~~~~~-------- 167 (789)
T 1sqj_A 104 FTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMG-TRT-------EGIWKSSDRAKTWTNVTSIPDAFTN-------- 167 (789)
T ss_dssp EEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEE-CSS-------SCEEEESSTTSSCEEETTSCCCCST--------
T ss_pred ceeccCCcccCccCCCccceeEEEEcCCCCCEEEEE-ecc-------CCEEEECCCCcccCCCccCccccCC--------
Confidence 9987431 1 112 12234443 3566663 311 1244444445689998764421100
Q ss_pred ccCCCCCEEEEE----CCEEEEEeCCCCeEEEEeCCCCcEEEccCCCCcc-------c-----C-CCcccEEEEEeCCEE
Q 043540 327 AAGEAPPLLAVV----NNELYAADHEKEEVRKFDKGRKLWRTLGRLPEQA-------S-----S-MNGWGLAFRACGDQL 389 (437)
Q Consensus 327 ~~~~~~~~~~~~----~~~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~~~-------~-----~-~~~~~~a~~~~~~~l 389 (437)
......+.+ .+.||+.......+++=.-.-++|+.+..+|... . . ......++...++.|
T Consensus 168 ---~~~~~~i~~~p~~~~~~~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l 244 (789)
T 1sqj_A 168 ---GIGYTSVIFDPERNGTIYASATAPQGMYVTHDGGVSWEPVAGQPSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFL 244 (789)
T ss_dssp ---TTCEEEEEECTTSTTCEEEEESSTTCEEEESSTTSSCEECTTCCCSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEE
T ss_pred ---CCCeEEEEECCCCCCEEEEEEcCCCeEEEEcCCCcCcccCCCCcCccccccccccCcccccccccceeEEcCCCCeE
Confidence 000112232 2477776543244555444556899987555421 0 0 000122222227889
Q ss_pred EEEcCCC-CCCCCeeEEEeeecCCCCCCceecCccCC
Q 043540 390 IVIGGPR-DSGGGIVELNGWVPDEGPPHWKLLARQPM 425 (437)
Q Consensus 390 ~v~GG~~-~~~~~~~~~~~~~~d~~~~~W~~l~~~p~ 425 (437)
|+..+.. ... ....-.+|+.+....+|+.+...|.
T Consensus 245 ~~~~~~~~~p~-~g~~g~l~~S~DgG~tW~~~~~~~~ 280 (789)
T 1sqj_A 245 YVTYADYPGPW-GVTFGEVWRQNRTSGAWDDITPRVG 280 (789)
T ss_dssp EEEEESSCSSS-CCCCCCEEEEETTTCCEEECCCCTT
T ss_pred EEEEecCCCCC-CCCCceEEEEeCCCCceEECcCCCC
Confidence 8873211 000 0012247777778899999976553
No 313
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=65.91 E-value=42 Score=34.10 Aligned_cols=148 Identities=14% Similarity=0.138 Sum_probs=74.3
Q ss_pred eeEEeCCEEEEEcCccCCceEEEEECCC----------CceecCCCCCCCccceeeEEE--CCEEEEEeccCCCCCCCce
Q 043540 179 ESLAVGTELLVFGKEVHGNAIYRYNLLT----------NTWSTGMTMNTPRCLFGSASL--GEIAILAGGCDPRGKLLKS 246 (437)
Q Consensus 179 ~~~~~~~~lyv~GG~~~~~~v~~yd~~t----------~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 246 (437)
++....+++|+|-| +.+|+++... ..|..+ |. .--++... ++++|++-| +.
T Consensus 448 Ait~~rg~~yfFKg----~~yWr~~~~~~~~~~P~~Is~~wp~L---P~--~IDAA~~~~~~~k~yFFkG--------~~ 510 (631)
T 1ck7_A 448 GIAQIRGEIFFFKD----RFIWRTVTPRDKPMGPLLVATFWPEL---PE--KIDAVYEAPQEEKAVFFAG--------NE 510 (631)
T ss_dssp EEEECSSSEEEECS----SEEEEESCTTSCCEEEEEGGGTCTTS---CS--SCSBCCEETTTTEEEEEET--------TE
T ss_pred eeEecCCcEEEEcC----CEEEEEcCCCCCCCCceeccccCCCC---Cc--cceEEEEECCCCEEEEEec--------CE
Confidence 45567899999964 3466665433 223333 21 11122222 578999976 56
Q ss_pred EEEEECCCC--cE-EecCC--CCcCCcCeeEEE---ECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccC
Q 043540 247 AELYNSITG--TW-MPISS--MHKARKMCSGVF---MDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIG 318 (437)
Q Consensus 247 ~~~yd~~t~--~W-~~~~~--~~~~r~~~~~~~---~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~ 318 (437)
.|+|+..+- -+ +.+.. +|......-+++ .++++|++-|.. .++||..+++-.. ..|.....
T Consensus 511 yWry~~~~l~~GYPk~Is~~G~P~~~~~IDAAf~~~~~gktYFFkG~~---------ywryd~~~~~vd~--gYPk~i~~ 579 (631)
T 1ck7_A 511 YWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGDK---------FWRYNEVKKKMDP--GFPKLIAD 579 (631)
T ss_dssp EEEEETTEECTTCCEEGGGGTCCTTCCCCCBCCCCTTTCEEEEEETTE---------EEEEETTTTEECT--TCCEETTT
T ss_pred EEEECCCccccCCCccchhcCCCCCCCcceeEEEecCCCeEEEEECCE---------EEEEcCCcccccC--CCCcchHh
Confidence 788885310 01 11211 121111122333 368999998764 8899987653221 11111100
Q ss_pred CCCcccccccCCCCCEEEEEC--CEEEEEeCCCCeEEEEeCCCCc
Q 043540 319 SDGVSVISAAGEAPPLLAVVN--NELYAADHEKEEVRKFDKGRKL 361 (437)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~--~~ly~~gg~~~~v~~yd~~~~~ 361 (437)
. -..+|. ...++...+ |++|++- .+..|+||..+..
T Consensus 580 ~--w~G~p~---~iDAAf~~~~~g~~YFFk--G~~Ywr~d~~~~~ 617 (631)
T 1ck7_A 580 A--WNAIPD---NLDAVVDLQGGGHSYFFK--GAYYLKLENQSLK 617 (631)
T ss_dssp S--CSSCCT---TCCEEECCTTSCBCEEEE--TTEEECCBTTBTT
T ss_pred h--cCCCCC---CCcEeEEEcCCCeEEEEE--CCEEEEEeCccce
Confidence 0 000010 012333333 7899984 4568888876643
No 314
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=65.83 E-value=77 Score=28.61 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=16.8
Q ss_pred CCEEEEEeCCCCeEEEEeCCC
Q 043540 339 NNELYAADHEKEEVRKFDKGR 359 (437)
Q Consensus 339 ~~~ly~~gg~~~~v~~yd~~~ 359 (437)
++++++.|+..+.|.+||..+
T Consensus 224 ~g~~l~sgs~dg~v~iwd~~~ 244 (343)
T 2xzm_R 224 NGKYIATGGKDKKLLIWDILN 244 (343)
T ss_dssp TSSEEEEEETTCEEEEEESSC
T ss_pred CCCEEEEEcCCCeEEEEECCC
Confidence 677778887888899999843
No 315
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=65.54 E-value=66 Score=27.68 Aligned_cols=148 Identities=9% Similarity=0.029 Sum_probs=76.0
Q ss_pred eeEEECCEEEEEeccCCCCCCCceEEEEECCCCc-E--Eec----CCCCcCCcCeeEEEE--CCEEEEEecccCCCCccC
Q 043540 223 GSASLGEIAILAGGCDPRGKLLKSAELYNSITGT-W--MPI----SSMHKARKMCSGVFM--DGKFYVIGGIGEGSSAML 293 (437)
Q Consensus 223 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W--~~~----~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~ 293 (437)
+++.+.+++|++-| ...|+++..... . ..+ +.+|. .--++... ++++|++-|..
T Consensus 35 Ai~~~~g~~~fFkg--------~~~Wr~~~~~~~~~~P~~I~~~wp~lp~--~IDAA~~~~~~~k~yfFkG~~------- 97 (218)
T 1gen_A 35 GIAQIRGEIFFFKD--------RFIWRTVTPRDKPMGPLLVATFWPELPE--KIDAVYEAPQEEKAVFFAGNE------- 97 (218)
T ss_dssp EEEEETTEEEEEET--------TEEEEESSTTSCCEEEEEGGGTCTTSCS--CCSEEEEETTTTEEEEEETTE-------
T ss_pred EEEeCCCcEEEEEC--------CEEEEEeCCCCccCCCEEHHHhcCCCCC--CccEEEEECCCCEEEEEeCCE-------
Confidence 45567899999977 344555443311 1 111 22332 12223333 68999997754
Q ss_pred CeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEE--ECCEEEEEeCCCCeEEEEeCCCCcEE-----Ec-
Q 043540 294 TDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV--VNNELYAADHEKEEVRKFDKGRKLWR-----TL- 365 (437)
Q Consensus 294 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ly~~gg~~~~v~~yd~~~~~W~-----~v- 365 (437)
.++||-. +..+..|..... ..+|.......++.. .++++|++- .+..++||..+++-. .+
T Consensus 98 --yW~y~~~----~~~~gyPk~I~~----~g~p~~~~~IDAAf~~~~~g~~YfFk--G~~ywr~d~~~~~v~~gyPr~i~ 165 (218)
T 1gen_A 98 --YWIYSAS----TLERGYPKPLTS----LGLPPDVQRVDAAFNWSKNKKTYIFA--GDKFWRYNEVKKKMDPGFPKLIA 165 (218)
T ss_dssp --EEEEETT----EECTTCSEEGGG----GTCCTTCCCCSEEEEETTTTEEEEEE--TTEEEEEETTTTEECSSCCEEHH
T ss_pred --EEEEcCc----cccCCCCccHhh----cCCCCCcCCccEEEEEcCCCeEEEEE--CCEEEEEECccccccCCCCcchh
Confidence 8889852 222222221111 001110001123444 368999994 467999999876321 11
Q ss_pred ---cCCCCcccCCCcccEEEEEe-CCEEEEEcCCCCCCCCeeEEEeeecCCCCC
Q 043540 366 ---GRLPEQASSMNGWGLAFRAC-GDQLIVIGGPRDSGGGIVELNGWVPDEGPP 415 (437)
Q Consensus 366 ---~~lp~~~~~~~~~~~a~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~ 415 (437)
..+|.. ..+|+..- ++.+|++-|.. .|+||..+.
T Consensus 166 ~~w~g~p~~------idaAf~~~~~g~~YfFkg~~----------y~~~~~~~~ 203 (218)
T 1gen_A 166 DAWNAIPDN------LDAVVDLQGGGHSYFFKGAY----------YLKLENQSL 203 (218)
T ss_dssp HHSSSCCSS------CSEEEECTTTCEEEEEETTE----------EEEEETTEE
T ss_pred hccCCCCCC------CCEEEEEcCCCcEEEEECCE----------EEEEECCce
Confidence 112221 13444333 48999997743 677876544
No 316
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=65.31 E-value=51 Score=32.42 Aligned_cols=107 Identities=14% Similarity=0.092 Sum_probs=63.3
Q ss_pred CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCc-CeeEEEE---------CC-EEEEEecccCCCCccCCeE
Q 043540 228 GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARK-MCSGVFM---------DG-KFYVIGGIGEGSSAMLTDV 296 (437)
Q Consensus 228 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~-~~~~~~~---------~g-~lyv~GG~~~~~~~~~~~v 296 (437)
++.||++-.. ...+.+.|++++.-+.+........ ....+.+ +| .||+.--.. +.......+
T Consensus 151 ~~~Lyv~~~~------~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~-~~~~~~~~V 223 (496)
T 3kya_A 151 KDHLYICYDG------HKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYD-GKGDESPSV 223 (496)
T ss_dssp EEEEEEEEET------EEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCC-TTGGGEEEE
T ss_pred CCEEEEEECC------CCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCC-CCcccCceE
Confidence 3679988642 2568999999999887755433221 2233333 45 488874332 110223457
Q ss_pred EEEECCC-CceE------ecCCCCCcccCCCCcccccccCCCCCEEEEE--CCEEEEEeCCCCeEEEEeCC
Q 043540 297 EMYDLET-GKWT------QITDMFPARIGSDGVSVISAAGEAPPLLAVV--NNELYAADHEKEEVRKFDKG 358 (437)
Q Consensus 297 ~~yd~~~-~~W~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ly~~gg~~~~v~~yd~~ 358 (437)
..++... +.|. .++... .+..+++. ++.||+.......|++||++
T Consensus 224 ~~i~r~~~G~~~~~~~~~~v~~~~-----------------~p~giavdp~~g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 224 YIIKRNADGTFDDRSDIQLIAAYK-----------------QCNGATIHPINGELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp EEEECCTTSCCSTTSCEEEEEEES-----------------CCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred EEEecCCCCceeecccceeeccCC-----------------CceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence 7787554 3553 222111 11345554 57899999888889999997
No 317
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=64.46 E-value=86 Score=28.62 Aligned_cols=64 Identities=8% Similarity=0.025 Sum_probs=37.7
Q ss_pred CCEEEEEecccCCCCccCCe-EEEEECCCCceEecCCCCCc-ccCCCCcccccccCCCCCEEEE-ECCEEEEEeCCCCeE
Q 043540 276 DGKFYVIGGIGEGSSAMLTD-VEMYDLETGKWTQITDMFPA-RIGSDGVSVISAAGEAPPLLAV-VNNELYAADHEKEEV 352 (437)
Q Consensus 276 ~g~lyv~GG~~~~~~~~~~~-v~~yd~~~~~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~ly~~gg~~~~v 352 (437)
+|++.+.|+.+ .. +..||+.+++-... +..+ ... .+ ..++. -++++++.++..+.|
T Consensus 206 ~g~~l~s~s~d-------~~~v~iwd~~~~~~~~~--~~~g~h~~---~v---------~~~~~s~~~~~l~s~s~d~~v 264 (355)
T 3vu4_A 206 KSDMVATCSQD-------GTIIRVFKTEDGVLVRE--FRRGLDRA---DV---------VDMKWSTDGSKLAVVSDKWTL 264 (355)
T ss_dssp TSSEEEEEETT-------CSEEEEEETTTCCEEEE--EECTTCCS---CE---------EEEEECTTSCEEEEEETTCEE
T ss_pred CCCEEEEEeCC-------CCEEEEEECCCCcEEEE--EEcCCCCC---cE---------EEEEECCCCCEEEEEECCCEE
Confidence 77888887765 34 88899987643211 1100 111 00 11222 267777777777889
Q ss_pred EEEeCCCC
Q 043540 353 RKFDKGRK 360 (437)
Q Consensus 353 ~~yd~~~~ 360 (437)
.+||..+.
T Consensus 265 ~iw~~~~~ 272 (355)
T 3vu4_A 265 HVFEIFND 272 (355)
T ss_dssp EEEESSCC
T ss_pred EEEEccCC
Confidence 99998654
No 318
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=64.42 E-value=1.4e+02 Score=31.12 Aligned_cols=263 Identities=14% Similarity=0.145 Sum_probs=122.8
Q ss_pred EEEEecCceEEEeccCCCCeeeCCCCCCccc-cccCCceeEEe---CCEEEEEcCccC---CceEEEEECCCCceecCCC
Q 043540 142 VYFSCKLKEWEAFDPIHHRWMHLPPMNASDC-FMCADKESLAV---GTELLVFGKEVH---GNAIYRYNLLTNTWSTGMT 214 (437)
Q Consensus 142 l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~-~~~~~~~~~~~---~~~lyv~GG~~~---~~~v~~yd~~t~~W~~~~~ 214 (437)
+|+.....-+++-+-...+|..+...+.+.. ....-..++.. .+.+|+..|... ...+++-+-.-.+|+.+..
T Consensus 30 ~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~v~~S~DgG~TW~~~~~ 109 (789)
T 1sqj_A 30 LYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAAFYVSEDRGQSFTIYES 109 (789)
T ss_dssp EEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCEEEEESSTTSEEEEEEC
T ss_pred EEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccEEEEECCCCCcceeccC
Confidence 3443333445666666778998765332110 00111122222 246787654321 1345544445578988742
Q ss_pred -CCC-----Cc-cceeeEEE---CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCc---CCcCeeEEEE----CC
Q 043540 215 -MNT-----PR-CLFGSASL---GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHK---ARKMCSGVFM----DG 277 (437)
Q Consensus 215 -~~~-----~r-~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~---~r~~~~~~~~----~g 277 (437)
++. .| ..+..++. .+.+|+. ... ..+++=+=.-.+|+.+..++. .-.....+.+ .+
T Consensus 110 ~~~~~~~~~~~~~~~~iav~p~~~~~v~~g-~~~------~gl~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~ 182 (789)
T 1sqj_A 110 PFPMGANDMGRNNGERLAVNPFNSNEVWMG-TRT------EGIWKSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNG 182 (789)
T ss_dssp SSCCCTTSTTTTSCCCEEEETTEEEEEEEE-CSS------SCEEEESSTTSSCEEETTSCCCCSTTTCEEEEEECTTSTT
T ss_pred CcccCccCCCccceeEEEEcCCCCCEEEEE-ecc------CCEEEECCCCcccCCCccCccccCCCCCeEEEEECCCCCC
Confidence 111 12 22334443 2456653 311 223222112357999876542 1122333443 24
Q ss_pred EEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccc---cCCCCCEEEEE--CCEEEEEe------
Q 043540 278 KFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISA---AGEAPPLLAVV--NNELYAAD------ 346 (437)
Q Consensus 278 ~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~ly~~g------ 346 (437)
.||+..... ..++.=.-.-.+|+.+..++..... .+.+.+|. ....++.+++. ++.||+..
T Consensus 183 ~~~~~~~~~-------~~v~~S~DgG~TW~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~p 254 (789)
T 1sqj_A 183 TIYASATAP-------QGMYVTHDGGVSWEPVAGQPSSWLN-RTTGAFPDKKPASIAPQPMKVALTPNFLYVTYADYPGP 254 (789)
T ss_dssp CEEEEESST-------TCEEEESSTTSSCEECTTCCCSCCH-HHHHTSTTCCCSSSSCEEEEEEECSSEEEEEEESSCSS
T ss_pred EEEEEEcCC-------CeEEEEcCCCcCcccCCCCcCcccc-ccccccCcccccccccceeEEcCCCCeEEEEEecCCCC
Confidence 677764321 1233322234579998755433200 00000000 00001223332 78999882
Q ss_pred --CCCCeEEEEeCCCCcEEEccCCCCcccC----CCcc---c-EEEEEe---CCEEEEEcCCCCCCCCeeEEEeeecCCC
Q 043540 347 --HEKEEVRKFDKGRKLWRTLGRLPEQASS----MNGW---G-LAFRAC---GDQLIVIGGPRDSGGGIVELNGWVPDEG 413 (437)
Q Consensus 347 --g~~~~v~~yd~~~~~W~~v~~lp~~~~~----~~~~---~-~a~~~~---~~~l~v~GG~~~~~~~~~~~~~~~~d~~ 413 (437)
+....|++.+-...+|+.+...|..... ...+ + .++++. .+.||+.+...... .....+|+-+..
T Consensus 255 ~~g~~g~l~~S~DgG~tW~~~~~~~~~~~p~~~~~~~~~~~g~~~lav~p~~~~~v~~~~~~~~~~--~~~~~l~~S~Dg 332 (789)
T 1sqj_A 255 WGVTFGEVWRQNRTSGAWDDITPRVGNSSPAPYNNQTFPAGGFCGLSVDATNPNRLVVITLDRDPG--PALDSIYLSTDA 332 (789)
T ss_dssp SCCCCCCEEEEETTTCCEEECCCCTTTEESCCCSSCCSCCCEEEEEEEETTEEEEEEEEEECCCSC--SSCCCEEEESST
T ss_pred CCCCCceEEEEeCCCCceEECcCCCCccccccccccccccCceEEEEECCCCCCEEEEEEeccCCC--cccccEEEecCC
Confidence 3566799999999999999865542100 0012 2 223232 25678776432100 001236666667
Q ss_pred CCCceecC
Q 043540 414 PPHWKLLA 421 (437)
Q Consensus 414 ~~~W~~l~ 421 (437)
..+|+.+.
T Consensus 333 G~tW~~~~ 340 (789)
T 1sqj_A 333 GATWKDVT 340 (789)
T ss_dssp TSSEEEHH
T ss_pred CCCceeCc
Confidence 78898886
No 319
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=63.93 E-value=88 Score=28.60 Aligned_cols=25 Identities=4% Similarity=0.072 Sum_probs=15.9
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCcEE
Q 043540 339 NNELYAADHEKEEVRKFDKGRKLWR 363 (437)
Q Consensus 339 ~~~ly~~gg~~~~v~~yd~~~~~W~ 363 (437)
+..||+.+...+.|.+|+...+.=+
T Consensus 321 g~~l~v~~~~~~~v~v~~~~~~~l~ 345 (365)
T 1jof_A 321 DEWMAITDDQEGWLEIYRWKDEFLH 345 (365)
T ss_dssp TTEEEEECSSSCEEEEEEEETTEEE
T ss_pred CCEEEEEEcCCCeEEEEEEchhhCc
Confidence 4466666555677888877665433
No 320
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=63.82 E-value=1.6e+02 Score=32.42 Aligned_cols=108 Identities=11% Similarity=0.079 Sum_probs=64.0
Q ss_pred CCceEEEEECCCCcEEecCCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCc
Q 043540 243 LLKSAELYNSITGTWMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGV 322 (437)
Q Consensus 243 ~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~ 322 (437)
....+.+|+...++.+.+......-.-.+.+.++|+|.+.-|. .+..||...++.-.... ....+ +
T Consensus 862 ~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~g~Lla~ig~---------~l~vy~l~~~~~L~~~~---~~~~~--i 927 (1158)
T 3ei3_A 862 KQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINS---------TVRLYEWTTEKELRTEC---NHYNN--I 927 (1158)
T ss_dssp CCEEEEEEEEETTEEEEEEEEEESSCEEEEEEETTEEEEEETT---------EEEEEEECTTSCEEEEE---EECCC--S
T ss_pred CceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeCCEEEEEcCC---------EEEEEECCCCceEEEEe---ecccc--E
Confidence 3467888888766666665555433445566789977765554 38889887664222110 00100 0
Q ss_pred ccccccCCCCCEEEEECCEEEEEeCC-CCeEEEEeCCCCcEEEccCCCCcc
Q 043540 323 SVISAAGEAPPLLAVVNNELYAADHE-KEEVRKFDKGRKLWRTLGRLPEQA 372 (437)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~ly~~gg~-~~~v~~yd~~~~~W~~v~~lp~~~ 372 (437)
....+.+.++.|++-+-. +-.+..|+...++-..++.=..++
T Consensus 928 --------~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~ 970 (1158)
T 3ei3_A 928 --------MALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPN 970 (1158)
T ss_dssp --------CEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCB
T ss_pred --------EEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccc
Confidence 001244568887766543 335678999999998888655544
No 321
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=63.00 E-value=1.4e+02 Score=30.46 Aligned_cols=170 Identities=12% Similarity=0.061 Sum_probs=86.3
Q ss_pred ceEEEEECCCCceecCCCCCCCccceeeEEECCEEEEEeccCCC-------CCCCceEEEEECCCCcE--EecCCCCc--
Q 043540 197 NAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPR-------GKLLKSAELYNSITGTW--MPISSMHK-- 265 (437)
Q Consensus 197 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~-------~~~~~~~~~yd~~t~~W--~~~~~~~~-- 265 (437)
..++++|..|++..... .+..+....+-+ +++-+++...+.. ......+++++..+..= +.+-..+.
T Consensus 155 ~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~ 232 (693)
T 3iuj_A 155 REIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQ 232 (693)
T ss_dssp EEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGG
T ss_pred EEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCC
Confidence 57999999999875541 111111222334 5543333333221 02245688888776542 12222222
Q ss_pred CCcCeeEE-EECCEEEEEecccCCCCccCCeEEEEECCCC--ceEecCCCCCcccCCCCcccccccCCCCCEEEEECCEE
Q 043540 266 ARKMCSGV-FMDGKFYVIGGIGEGSSAMLTDVEMYDLETG--KWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNEL 342 (437)
Q Consensus 266 ~r~~~~~~-~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 342 (437)
+....+.. .-||+..++.... ....+.++.+|+.+. .|..+..-...... .+...+++|
T Consensus 233 ~~~~~~~~~SpDg~~l~~~~~~---~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~---------------~~~~~g~~l 294 (693)
T 3iuj_A 233 HHRYVGATVTEDDRFLLISAAN---STSGNRLYVKDLSQENAPLLTVQGDLDADVS---------------LVDNKGSTL 294 (693)
T ss_dssp CCSEEEEEECTTSCEEEEEEES---SSSCCEEEEEETTSTTCCCEEEECSSSSCEE---------------EEEEETTEE
T ss_pred CeEEEEEEEcCCCCEEEEEEcc---CCCCcEEEEEECCCCCCceEEEeCCCCceEE---------------EEeccCCEE
Confidence 22222222 2366654443222 112357899998766 67776432211111 133457889
Q ss_pred EEEeCC---CCeEEEEeCCCC---cEEEccCCCCcccCCCcccEEEEEeCCEEEEEc
Q 043540 343 YAADHE---KEEVRKFDKGRK---LWRTLGRLPEQASSMNGWGLAFRACGDQLIVIG 393 (437)
Q Consensus 343 y~~gg~---~~~v~~yd~~~~---~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~G 393 (437)
|+.... ...|+.+|..+. .|+.+..-.. .. ..+...++.|++..
T Consensus 295 ~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~--~~-----~~~s~~g~~lv~~~ 344 (693)
T 3iuj_A 295 YLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ--QV-----LTVHSGSGYLFAEY 344 (693)
T ss_dssp EEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS--SC-----EEEEEETTEEEEEE
T ss_pred EEEECCCCCCCEEEEEeCCCCCccccEEEecCCC--CE-----EEEEEECCEEEEEE
Confidence 888642 467999998763 4887643222 11 13445567766553
No 322
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=62.82 E-value=1.3e+02 Score=30.20 Aligned_cols=110 Identities=5% Similarity=-0.017 Sum_probs=60.1
Q ss_pred CCEEEEEeccCCCCCCCceEEEEECCCCcEEecC-CCCcCC-cCeeEEE-ECCEEEEEecccCCCCccCCeEEEEECCCC
Q 043540 228 GEIAILAGGCDPRGKLLKSAELYNSITGTWMPIS-SMHKAR-KMCSGVF-MDGKFYVIGGIGEGSSAMLTDVEMYDLETG 304 (437)
Q Consensus 228 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~-~~~~~r-~~~~~~~-~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~ 304 (437)
+++..+.++.+ ..+.++|.++ .+..+. .++.+. ..++.++ -||++.++||.+ ..+..||+.++
T Consensus 96 dG~~LAs~s~d------g~V~iwd~~~-~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~D-------GtVkIWd~~~~ 161 (588)
T 2j04_A 96 IDDWMAVLSNN------GNVSVFKDNK-MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNED-------GELQFFSIRKN 161 (588)
T ss_dssp SSSCEEEEETT------SCEEEEETTE-EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETT-------SEEEEEECCCC
T ss_pred CCCEEEEEeCC------CcEEEEeCCc-eeeeccCCCccccccEEEEEEcCCCCEEEEEcCC-------CEEEEEECCCC
Confidence 66766666654 4467777443 444433 222222 2333332 388888888876 36889999886
Q ss_pred ce-----EecCCCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCc
Q 043540 305 KW-----TQITDMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKL 361 (437)
Q Consensus 305 ~W-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~ 361 (437)
.- ..+..+.....+|.. +-..++...+. ++.++..+.+..||..++.
T Consensus 162 ~l~~~~~i~l~ti~~~~~gh~~---------~V~sVawSPdg-Laass~D~tVrlWd~~~~~ 213 (588)
T 2j04_A 162 SENTPEFYFESSIRLSDAGSKD---------WVTHIVWYEDV-LVAALSNNSVFSMTVSASS 213 (588)
T ss_dssp TTTCCCCEEEEEEECSCTTCCC---------CEEEEEEETTE-EEEEETTCCEEEECCCSSS
T ss_pred ccccccceeeeeeecccccccc---------cEEEEEEcCCc-EEEEeCCCeEEEEECCCCc
Confidence 31 111111111111100 11234445555 6677778889999998765
No 323
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=62.20 E-value=1.5e+02 Score=30.61 Aligned_cols=222 Identities=13% Similarity=0.107 Sum_probs=109.0
Q ss_pred CEEEEEcCccCCceEEEEECCCCceecCCCCCCCc----cceeeEEE----CCEEEEEeccCCCCCCCceEEEEECC--C
Q 043540 185 TELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPR----CLFGSASL----GEIAILAGGCDPRGKLLKSAELYNSI--T 254 (437)
Q Consensus 185 ~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r----~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~yd~~--t 254 (437)
+.+|+.. ....+++.+-.-.+|+.+.+.+... .......+ .+.||+..|............+|-+. -
T Consensus 36 ~~~~~~~---~~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~~~l~~S~DgG 112 (737)
T 2cn3_A 36 DLIYARA---AIGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNMGAILRSTDRG 112 (737)
T ss_dssp TCEEEEC---SSSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCCCEEEEESSSS
T ss_pred CEEEEEe---cCCcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCCccEEEeCCCC
Confidence 5677743 1235899998899999986533211 12233333 35888876531110001122344433 3
Q ss_pred CcEEecCCC-C-----cCCcC-eeEEEE---CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCccc
Q 043540 255 GTWMPISSM-H-----KARKM-CSGVFM---DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSV 324 (437)
Q Consensus 255 ~~W~~~~~~-~-----~~r~~-~~~~~~---~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 324 (437)
.+|+.+... + ..+.. +..++. .+.||+..... ..+++=+-.-.+|+.+..++...... .
T Consensus 113 ~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~g-------~gl~~S~DgG~tW~~~~~~~~~~~~~----~ 181 (737)
T 2cn3_A 113 ETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRCG-------NGLWRSTDYGVTWSKVESFPNPGTYI----Y 181 (737)
T ss_dssp SSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECSTT-------CCEEEESSTTSSCEECTTCCCCCCCB----S
T ss_pred CCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeeccC-------CcEEEeCCCCcceecccCCCCCcccc----c
Confidence 579887421 1 01212 333332 25677743110 11443333346899988665421100 0
Q ss_pred ccc---c-CCCCCEEEEEC----------CEEEEEeCC-CCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEe-CCE
Q 043540 325 ISA---A-GEAPPLLAVVN----------NELYAADHE-KEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRAC-GDQ 388 (437)
Q Consensus 325 ~~~---~-~~~~~~~~~~~----------~~ly~~gg~-~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~-~~~ 388 (437)
-|. . .......+.++ ++||+.-.. ...|++=.-.-.+|+.+..+|.... ....+.. ++.
T Consensus 182 ~p~~~~~~~~~g~~~v~~dp~~~~~~~~~~~v~~~~~~~~~~v~~S~DgG~tW~~~~~~p~~~~-----~~~~~~~~~~~ 256 (737)
T 2cn3_A 182 DPNFDYTKDIIGVVWVVFDKSSSTPGNPTKTIYVGVADKNESIYRSTDGGVTWKAVPGQPKGLL-----PHHGVLASNGM 256 (737)
T ss_dssp CTTSTTTCSBCCEEEEEECGGGSCTTSCCSCEEEEESCSSCCEEEESSTTSCCEECTTCCCSSE-----EEEEEECTTSE
T ss_pred CcccccccCCCCEEEEEcCCCCcccCCCCCEEEEEecCCCccEEEEcCCCCceEECCCCCCccc-----ceEEEECCCCe
Confidence 000 0 00001123332 377775322 2235554444568999987765322 1222222 678
Q ss_pred EEEEcCCCC-CCCCeeEEEeeecCCCCCCceecCccCC
Q 043540 389 LIVIGGPRD-SGGGIVELNGWVPDEGPPHWKLLARQPM 425 (437)
Q Consensus 389 l~v~GG~~~-~~~~~~~~~~~~~d~~~~~W~~l~~~p~ 425 (437)
||+..+-.. .......-.+|+.+....+|+.+...|.
T Consensus 257 l~~~~~d~~g~y~~~~~g~v~~s~d~G~tW~~i~~~~~ 294 (737)
T 2cn3_A 257 LYITYGDTCGPYDGNGKGQVWKFNTRTGEWIDITPIPY 294 (737)
T ss_dssp EEEEEESSCCSSCCSCCEEEEEEETTTCCEEECCSSCT
T ss_pred EEEEecCCCCccccccCceEEEEeCCCCCEEEccCCCC
Confidence 888643210 0011133568888889999999987765
No 324
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=61.95 E-value=1e+02 Score=28.66 Aligned_cols=28 Identities=21% Similarity=0.163 Sum_probs=21.8
Q ss_pred ECCEEEEEeCCCCeEEEEeCCCCcEEEc
Q 043540 338 VNNELYAADHEKEEVRKFDKGRKLWRTL 365 (437)
Q Consensus 338 ~~~~ly~~gg~~~~v~~yd~~~~~W~~v 365 (437)
-+++.++.|+..+.|.+||..+++-..+
T Consensus 352 ~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 379 (447)
T 3dw8_B 352 GSDSVVMTGSYNNFFRMFDRNTKRDITL 379 (447)
T ss_dssp TTSSEEEEECSTTEEEEEETTTCCEEEE
T ss_pred CCCCEEEEeccCCEEEEEEcCCCcceee
Confidence 3566677788888999999998876654
No 325
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=61.39 E-value=70 Score=28.26 Aligned_cols=106 Identities=10% Similarity=0.073 Sum_probs=57.0
Q ss_pred cCeeEEEE---CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE-CCEEE
Q 043540 268 KMCSGVFM---DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV-NNELY 343 (437)
Q Consensus 268 ~~~~~~~~---~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ly 343 (437)
...++..+ ++.||++.... ..++.+|++...+..++--..... .+++.. +|.++
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~-------~~I~~ld~~g~v~~~i~l~g~~D~---------------EGIa~~~~g~~~ 84 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKP-------AAIVEMTTNGDLIRTIPLDFVKDL---------------ETIEYIGDNQFV 84 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETT-------EEEEEEETTCCEEEEEECSSCSSE---------------EEEEECSTTEEE
T ss_pred cCcceeEEeCCCCEEEEEECCC-------CeEEEEeCCCCEEEEEecCCCCCh---------------HHeEEeCCCEEE
Confidence 34555544 47899986543 458999999777777642111111 235554 45655
Q ss_pred EEeCCCCeEEEEeCCCCc--EE-EccCCCCc-ccCCCc-ccEEEEEeCCEEEEEcCC
Q 043540 344 AADHEKEEVRKFDKGRKL--WR-TLGRLPEQ-ASSMNG-WGLAFRACGDQLIVIGGP 395 (437)
Q Consensus 344 ~~gg~~~~v~~yd~~~~~--W~-~v~~lp~~-~~~~~~-~~~a~~~~~~~l~v~GG~ 395 (437)
+.......+++|+...+. |. ....++.. .....+ -|.|....+++||++-..
T Consensus 85 vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~ 141 (255)
T 3qqz_A 85 ISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEK 141 (255)
T ss_dssp EEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEES
T ss_pred EEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECc
Confidence 665455778888765543 42 11222211 111111 245554456788887543
No 326
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=60.64 E-value=1.5e+02 Score=30.00 Aligned_cols=145 Identities=11% Similarity=0.080 Sum_probs=86.0
Q ss_pred eCCEEEEEcCccCCceEEEEECCCCceecCC--CCCCCccceeeEEE--CCEEEEEe-ccCCCCCCCceEEEEECCCCcE
Q 043540 183 VGTELLVFGKEVHGNAIYRYNLLTNTWSTGM--TMNTPRCLFGSASL--GEIAILAG-GCDPRGKLLKSAELYNSITGTW 257 (437)
Q Consensus 183 ~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~--~~~~~r~~~~~~~~--~~~iyv~G-G~~~~~~~~~~~~~yd~~t~~W 257 (437)
.++.||+.- ...+.+.+.++....-+.+. .+..|| +.++. ++.||+.- |. ...+++.++.-..=
T Consensus 402 ~~~~lY~tD--~~~~~I~v~~~~G~~~~~l~~~~l~~P~---~iavdp~~G~ly~tD~g~------~~~I~r~~~dG~~~ 470 (619)
T 3s94_A 402 VARNLYWTD--TGTDRIEVTRLNGTMRKILISEDLEEPR---AIVLDPMVGYMYWTDWGE------IPKIERAALDGSDR 470 (619)
T ss_dssp TTTEEEEEE--TTTTEEEEEETTSCSCEEEECTTCCSEE---EEEEETTTTEEEEEECSS------SCEEEEEETTSCSC
T ss_pred ccCcEEEEe--CCCCcEEEEeCCCCeEEEEEECCCCCee---eEEEEcCCCcEEEecCCC------CCEEEEEccCCCcc
Confidence 478899874 23467888888655433332 233332 34443 58999884 21 25678887754322
Q ss_pred EecCCCCcCCcCeeEEEE---CCEEEEEecccCCCCccCCeEEEEECCCCceEecC--CCCCcccCCCCcccccccCCCC
Q 043540 258 MPISSMHKARKMCSGVFM---DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQIT--DMFPARIGSDGVSVISAAGEAP 332 (437)
Q Consensus 258 ~~~~~~~~~r~~~~~~~~---~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~~~ 332 (437)
+.+.. .......++.+ +++||+.-.. ...++.+|+....=+.+. .+.. +
T Consensus 471 ~~l~~--~~l~~P~GlalD~~~~~LY~aD~~-------~~~I~~~~~dG~~~~~~~~~~l~~-----------------P 524 (619)
T 3s94_A 471 VVLVN--TSLGWPNGLALDYDEGKIYWGDAK-------TDKIEVMNTDGTGRRVLVEDKIPH-----------------I 524 (619)
T ss_dssp EEEEC--SSCSCEEEEEEETTTTEEEEEETT-------TTEEEEEESSSCCCEEEEECCCCS-----------------S
T ss_pred EEEEe--CCCCCCeeeEEcccCCEEEEEECC-------CCEEEEEecCCCceEEEeccCCCC-----------------c
Confidence 22221 11223334444 5899998433 246889988654322221 1111 1
Q ss_pred CEEEEECCEEEEEeCCCCeEEEEeCCCCcEEE
Q 043540 333 PLLAVVNNELYAADHEKEEVRKFDKGRKLWRT 364 (437)
Q Consensus 333 ~~~~~~~~~ly~~gg~~~~v~~yd~~~~~W~~ 364 (437)
.++++.++.||+.+.....|++.|+.+..=+.
T Consensus 525 ~glav~~~~ly~tD~~~~~I~~~~k~~g~~~~ 556 (619)
T 3s94_A 525 FGFTLLGDYVYWTDWQRRSIERVHKRSAEREV 556 (619)
T ss_dssp CCEEEETTEEEEECTTSSCEEEEESSSCCEEE
T ss_pred EEEEEECCEEEEeecCCCeEEEEEcCCCceEE
Confidence 35788999999999888899999998874433
No 327
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=58.34 E-value=47 Score=33.81 Aligned_cols=151 Identities=8% Similarity=-0.021 Sum_probs=73.2
Q ss_pred eeEEECCEEEEEeccCCCCCCCceEEEEECCCC-cEE--ec----CCCCcCCcCeeEEEE--CCEEEEEecccCCCCccC
Q 043540 223 GSASLGEIAILAGGCDPRGKLLKSAELYNSITG-TWM--PI----SSMHKARKMCSGVFM--DGKFYVIGGIGEGSSAML 293 (437)
Q Consensus 223 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~-~W~--~~----~~~~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~ 293 (437)
+++...+++|++-| ...|+++.... ... .+ +.+|. ..-++... ++++|++-|..
T Consensus 448 Ait~~rg~~yfFKg--------~~yWr~~~~~~~~~~P~~Is~~wp~LP~--~IDAA~~~~~~~k~yFFkG~~------- 510 (631)
T 1ck7_A 448 GIAQIRGEIFFFKD--------RFIWRTVTPRDKPMGPLLVATFWPELPE--KIDAVYEAPQEEKAVFFAGNE------- 510 (631)
T ss_dssp EEEECSSSEEEECS--------SEEEEESCTTSCCEEEEEGGGTCTTSCS--SCSBCCEETTTTEEEEEETTE-------
T ss_pred eeEecCCcEEEEcC--------CEEEEEcCCCCCCCCceeccccCCCCCc--cceEEEEECCCCEEEEEecCE-------
Confidence 44556889999966 45666665432 111 11 12332 11123333 68899997754
Q ss_pred CeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEE--ECCEEEEEeCCCCeEEEEeCCCCcEE-----Ecc
Q 043540 294 TDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAV--VNNELYAADHEKEEVRKFDKGRKLWR-----TLG 366 (437)
Q Consensus 294 ~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ly~~gg~~~~v~~yd~~~~~W~-----~v~ 366 (437)
.++||.. +..+..|..... ...|......-++.. .++++|++- .+..|+||..+++=. .+.
T Consensus 511 --yWry~~~----~l~~GYPk~Is~----~G~P~~~~~IDAAf~~~~~gktYFFk--G~~ywryd~~~~~vd~gYPk~i~ 578 (631)
T 1ck7_A 511 --YWIYSAS----TLERGYPKPLTS----LGLPPDVQRVDAAFNWSKNKKTYIFA--GDKFWRYNEVKKKMDPGFPKLIA 578 (631)
T ss_dssp --EEEEETT----EECTTCCEEGGG----GTCCTTCCCCCBCCCCTTTCEEEEEE--TTEEEEEETTTTEECTTCCEETT
T ss_pred --EEEECCC----ccccCCCccchh----cCCCCCCCcceeEEEecCCCeEEEEE--CCEEEEEcCCcccccCCCCcchH
Confidence 7888852 222222211111 001100000011222 368999994 467999998765311 111
Q ss_pred -CCCCcccCCCcccEEEEEe-CCEEEEEcCCCCCCCCeeEEEeeecCCCCC
Q 043540 367 -RLPEQASSMNGWGLAFRAC-GDQLIVIGGPRDSGGGIVELNGWVPDEGPP 415 (437)
Q Consensus 367 -~lp~~~~~~~~~~~a~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~ 415 (437)
..+.... ..-+|+..- ++++|++-|.. .|+||..+.
T Consensus 579 ~~w~G~p~---~iDAAf~~~~~g~~YFFkG~~----------Ywr~d~~~~ 616 (631)
T 1ck7_A 579 DAWNAIPD---NLDAVVDLQGGGHSYFFKGAY----------YLKLENQSL 616 (631)
T ss_dssp TSCSSCCT---TCCEEECCTTSCBCEEEETTE----------EECCBTTBT
T ss_pred hhcCCCCC---CCcEeEEEcCCCeEEEEECCE----------EEEEeCccc
Confidence 1111111 112333221 37899987754 688887544
No 328
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=56.63 E-value=1.9e+02 Score=30.01 Aligned_cols=215 Identities=14% Similarity=0.086 Sum_probs=106.1
Q ss_pred CEEEEEcCccCCceEEEEECCCCceecCCC-C-----CC---CccceeeEEE----CCEEEEEeccCCCCCCCceEEEEE
Q 043540 185 TELLVFGKEVHGNAIYRYNLLTNTWSTGMT-M-----NT---PRCLFGSASL----GEIAILAGGCDPRGKLLKSAELYN 251 (437)
Q Consensus 185 ~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~-~-----~~---~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~yd 251 (437)
+.+|+-+ ...-+++-+-.-.+|+.+.. + +. .........+ .+.+|+..|...... ....+|-
T Consensus 34 ~~~y~~~---~~ggv~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~~~~~--~~~~i~~ 108 (763)
T 3a0f_A 34 DLIYART---DIGGTYRWNAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDYVQWD--PWAAFLV 108 (763)
T ss_dssp TCEEEEE---SSSCEEEEETTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSCTTTC--SCCEEEE
T ss_pred CEEEEEe---ccCcEEEECCCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEecccccCC--CCceEEE
Confidence 3455543 12347777777889998765 3 21 1122233333 368888765211111 1123333
Q ss_pred CC--CCcEEecCCC-C-----cCCcC-eeEEEE---CCEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCC
Q 043540 252 SI--TGTWMPISSM-H-----KARKM-CSGVFM---DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGS 319 (437)
Q Consensus 252 ~~--t~~W~~~~~~-~-----~~r~~-~~~~~~---~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~ 319 (437)
+. -.+|+++... + ..|.. ...++. .+.+|+.+.. ..+++=+-.-.+|+.+..++......
T Consensus 109 S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~--------~~l~~S~DgG~TW~~~~~~~~~~~~~ 180 (763)
T 3a0f_A 109 SDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRT--------QGLWRSTDRAQTWSRMNQLPDSSTYG 180 (763)
T ss_dssp ESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSS--------SCEEEESSTTSSCEECTTSCCCSCTT
T ss_pred ECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCC--------CcEEEECCCCcCccccccCcccCCCc
Confidence 33 3579987521 1 11221 233333 3678876421 12443333456899998665432110
Q ss_pred CCcccccccCCCCCEEEEE----CCEEEEEeCCCCeEEEEeCCCCcEEEccCCCCcc---------------c-CCCccc
Q 043540 320 DGVSVISAAGEAPPLLAVV----NNELYAADHEKEEVRKFDKGRKLWRTLGRLPEQA---------------S-SMNGWG 379 (437)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~----~~~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~~~---------------~-~~~~~~ 379 (437)
.....+.+ .++||+.......+++=+-.-.+|+.+..+|... . ... ..
T Consensus 181 -----------~~~~~i~~~p~~~~~~~~~~~~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~ 248 (763)
T 3a0f_A 181 -----------IGIISVIFDPKNVGTAYVASHAVGGLWVTWDGGANWSQVGGQPTQWSDWTKSIVAASGTAIQSSGP-LP 248 (763)
T ss_dssp -----------TCEEEEEECSSSTTCEEEEESSTTCEEEESSSSSSCEECTTCCCSCCHHHHHHHHHHCCCCSSSSC-EE
T ss_pred -----------cceEEEEECCCCCCEEEEEEeCCCeEEEECCCCCCccccCCCccccccccccccccccccccCCCC-cc
Confidence 00112222 2468877543224555544556899997655321 0 000 11
Q ss_pred EEEEE-eCCEEEEEcC-CCCCCCCeeEEEeeecCCCCCCceecCccCC
Q 043540 380 LAFRA-CGDQLIVIGG-PRDSGGGIVELNGWVPDEGPPHWKLLARQPM 425 (437)
Q Consensus 380 ~a~~~-~~~~l~v~GG-~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~ 425 (437)
..++. -++.||+... .....++ ..-.+|+.+....+|+.+...|.
T Consensus 249 ~~~~~~~~g~l~~~~~~~~~~~~~-~~g~v~rS~D~G~tW~~~~~~~~ 295 (763)
T 3a0f_A 249 IKIALGKNGRLYITYSDAPGPWGV-LYGEVWSYDPTNGNWKHITPSRE 295 (763)
T ss_dssp EEEEECTTSCEEEEEESSCSSSCC-CCEEEEEEETTTTEEEECCTTSS
T ss_pred eeEEECCCCcEEEEeccCCCCCCC-cceeEEEEeCCCCceEECCCCCC
Confidence 22222 2578888742 1111011 12457888888999999876664
No 329
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=56.28 E-value=1.4e+02 Score=28.52 Aligned_cols=76 Identities=7% Similarity=-0.032 Sum_probs=42.4
Q ss_pred CCEEEEEeC---------CCCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCC-EEEEEcCCCCCCCCeeEEEee
Q 043540 339 NNELYAADH---------EKEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGD-QLIVIGGPRDSGGGIVELNGW 408 (437)
Q Consensus 339 ~~~ly~~gg---------~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~-~l~v~GG~~~~~~~~~~~~~~ 408 (437)
++++|+.-. ..+.|.++|..+.+ .+..++.... .++.++..-+. ++|+..... ..+-
T Consensus 330 g~rlyVa~~~~~~gthk~~s~~VsVID~~T~k--vv~~I~vg~~---P~gia~spDg~~~lyv~n~~s--------~~Vs 396 (426)
T 3c75_H 330 SDRIYLLVDQRDEWKHKAASRFVVVLNAETGE--RINKIELGHE---IDSINVSQDAEPLLYALSAGT--------QTLH 396 (426)
T ss_dssp GTEEEEEEEECCTTCTTSCEEEEEEEETTTCC--EEEEEEEEEE---ECEEEECCSSSCEEEEEETTT--------TEEE
T ss_pred CCEEEEEecccccccccCCCCEEEEEECCCCe--EEEEEECCCC---cCeEEEccCCCEEEEEEcCCC--------CeEE
Confidence 478998742 13579999998865 3333332221 14666555556 788876432 1244
Q ss_pred ecCCCCCCceecCcc-CCCceE
Q 043540 409 VPDEGPPHWKLLARQ-PMCGFV 429 (437)
Q Consensus 409 ~~d~~~~~W~~l~~~-p~~~~~ 429 (437)
++| ..+|+.+..+ +.+...
T Consensus 397 VID--~~t~kvv~tI~~vG~~P 416 (426)
T 3c75_H 397 IYD--AATGEELRSVDQLGRGP 416 (426)
T ss_dssp EEE--TTTCCEEEEECCCSSSC
T ss_pred EEE--CCCCCEEEEecCCCCCC
Confidence 456 4456666654 444433
No 330
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=53.67 E-value=2e+02 Score=29.57 Aligned_cols=116 Identities=12% Similarity=0.046 Sum_probs=62.2
Q ss_pred CCEEEEEcCcc--CCceEEEEECCC-Cceec-CCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEEC-------
Q 043540 184 GTELLVFGKEV--HGNAIYRYNLLT-NTWST-GMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNS------- 252 (437)
Q Consensus 184 ~~~lyv~GG~~--~~~~v~~yd~~t-~~W~~-~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~------- 252 (437)
|+.||+..... ....++++|..+ ..|+. +-+-............++.|++....++ ...++++|+
T Consensus 330 g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g----~~~l~~~dl~~~~~~~ 405 (751)
T 2xe4_A 330 TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAG----LTRIWTMMADSQDGVF 405 (751)
T ss_dssp TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETT----EEEEEEEECCTTTSCC
T ss_pred CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCC----EEEEEEEecccccccc
Confidence 77888876432 345899999876 67876 4221111122233345777877765432 367889996
Q ss_pred CCCc-EEecCCCCcCCcCeeEEE-------EC-CEEEEEecccCCCCccCCeEEEEECCCCceEecC
Q 043540 253 ITGT-WMPISSMHKARKMCSGVF-------MD-GKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQIT 310 (437)
Q Consensus 253 ~t~~-W~~~~~~~~~r~~~~~~~-------~~-g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~ 310 (437)
.++. -+.++ ++.. .+...+ .+ +.+++.... ...-..++.||+.+++.+.+.
T Consensus 406 ~~g~~~~~l~-l~~~--~~~~~~~~~~~~~~~~~~l~~~~ss----~~~P~~~~~~d~~~~~~~~l~ 465 (751)
T 2xe4_A 406 KAGTGLREVV-MEEP--IFTVHLVESQMLEYEEPTFRMEYSS----LATPNTWFDVSPQDHSRTAVK 465 (751)
T ss_dssp CTTTCCEECC-CCCS--SCEEEECGGGCCCTTCSCEEEEEEE----TTEEEEEEEECTTTCCEEEEE
T ss_pred cCCccceEEC-CCCc--eeEEEeccCcccCCCCCEEEEEEeC----CCCCCEEEEEECCCCcEEEEe
Confidence 3444 44442 2222 111111 13 334333211 122346888999888876664
No 331
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=52.79 E-value=65 Score=30.97 Aligned_cols=121 Identities=13% Similarity=0.014 Sum_probs=61.7
Q ss_pred CCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCCCcCCcCeeEEEE-C-CEEEEEeccc--CCCCccCCeEEEEECCC
Q 043540 228 GEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSMHKARKMCSGVFM-D-GKFYVIGGIG--EGSSAMLTDVEMYDLET 303 (437)
Q Consensus 228 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~-g~lyv~GG~~--~~~~~~~~~v~~yd~~~ 303 (437)
...+||.-...... .+.+.++|+.+++= +..++..... ..++- | ..+||..-.. ...+...+.+.++|+.+
T Consensus 84 ~~~vyV~n~~~~~~--~~~VsVID~~t~~v--v~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t 158 (426)
T 3c75_H 84 ARRVYIQDPAHFAA--ITQQFVIDGSTGRI--LGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT 158 (426)
T ss_dssp TTEEEEEECTTTCS--SEEEEEEETTTTEE--EEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCEEEEECCCcCCC--CCeEEEEECCCCEE--EEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence 46788885422111 17899999988753 3344444433 33332 4 4588774210 00011235699999999
Q ss_pred CceEecCCCC-CcccCCCCcccccccCCCCCEEEE-EC-CEEEEEeCC-CCeEEEEeCCCCcE
Q 043540 304 GKWTQITDMF-PARIGSDGVSVISAAGEAPPLLAV-VN-NELYAADHE-KEEVRKFDKGRKLW 362 (437)
Q Consensus 304 ~~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~ly~~gg~-~~~v~~yd~~~~~W 362 (437)
++-..--.++ ..+.. .+..++.+++ -+ .+||+.... .+.|.++|..+++=
T Consensus 159 ~~vv~~I~v~g~~r~~---------~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kv 212 (426)
T 3c75_H 159 FLPIADIELPDAPRFL---------VGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTF 212 (426)
T ss_dssp CCEEEEEEETTCCCCC---------BSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred CcEEEEEECCCccccc---------cCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeE
Confidence 8653221122 11110 0001122233 23 467776543 56788888888654
No 332
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=52.17 E-value=1.6e+02 Score=28.05 Aligned_cols=128 Identities=16% Similarity=0.249 Sum_probs=71.9
Q ss_pred CCCcEEe--cCCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecC-----CCCCcccCCCCcccc
Q 043540 253 ITGTWMP--ISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQIT-----DMFPARIGSDGVSVI 325 (437)
Q Consensus 253 ~t~~W~~--~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~-----~~~~~~~~~~~~~~~ 325 (437)
..+.|+. ++..+..-.-|+-+.+++.=|++|-.. +......-...|-+. .|..-. .++.....
T Consensus 268 ~~spW~~t~L~~i~~vTe~HSFa~i~~~~fa~GyHn-GDv~PRe~G~~yfs~--~~~sp~~~vrr~i~sey~~------- 337 (670)
T 3ju4_A 268 HKSPWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQ-GDVAPREVGLFYFPD--AFNSPSNYVRRQIPSEYEP------- 337 (670)
T ss_dssp TTSCCEEEECCSCTTCSEEEEEEECSSSCEEEEEEE-CSSSSCEEEEEEETT--TTTCTTCCEEEECCGGGCT-------
T ss_pred ccCCceecccccccceeeeeeeeEecCCceEEEecc-CCCCcceeeEEEecc--cccCCcceeeeechhhhcc-------
Confidence 4455753 445554455788888888888887554 222222223333221 121110 11111111
Q ss_pred cccCCCCCEEEEECCEEEEEe--C----CCCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcCCCC
Q 043540 326 SAAGEAPPLLAVVNNELYAAD--H----EKEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGGPRD 397 (437)
Q Consensus 326 ~~~~~~~~~~~~~~~~ly~~g--g----~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG~~~ 397 (437)
...-+++-.++|.||+.- - -...+.+-+.....|..+- +|.... --.+-++..+|.||+||-.+.
T Consensus 338 ---~AsEPCvkyYdgvLyLtTRgt~~~~~GS~L~rs~d~Gq~w~slr-fp~nvH---htnlPFakvgD~l~mFgsERA 408 (670)
T 3ju4_A 338 ---DASEPCIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLR-FPHNVH---HTTLPFAKVGDDLIMFGSERA 408 (670)
T ss_dssp ---TEEEEEEEEETTEEEEEEEESCTTSCCCEEEEESSTTSSCEEEE-CTTCCC---SSCCCEEEETTEEEEEEECSS
T ss_pred ---ccccchhhhhCCEEEEEecCcCCCCCcceeeeecccCCchhhee-cccccc---ccCCCcceeCCEEEEEecccc
Confidence 011156778999999983 1 2456788888888899874 333221 113456788999999997664
No 333
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=48.55 E-value=66 Score=30.69 Aligned_cols=61 Identities=3% Similarity=-0.016 Sum_probs=35.5
Q ss_pred CEEEEEecccCCCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE--CCEEEEEeCCCCeEEE
Q 043540 277 GKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV--NNELYAADHEKEEVRK 354 (437)
Q Consensus 277 g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ly~~gg~~~~v~~ 354 (437)
+.+++.|+.+ ..+..||+.++.-.. .... .... ...+.. +|+.++.|+..+.|.+
T Consensus 162 ~~~las~s~D-------g~v~iwD~~~~~~~~-~~~~-~~~~--------------v~~v~wspdg~~lasgs~dg~v~i 218 (434)
T 2oit_A 162 PSMVAVCLAD-------GSIAVLQVTETVKVC-ATLP-STVA--------------VTSVCWSPKGKQLAVGKQNGTVVQ 218 (434)
T ss_dssp TTEEEEEETT-------SCEEEEEESSSEEEE-EEEC-GGGC--------------EEEEEECTTSSCEEEEETTSCEEE
T ss_pred CCEEEEEECC-------CeEEEEEcCCCccee-eccC-CCCc--------------eeEEEEcCCCCEEEEEcCCCcEEE
Confidence 6677777765 248889988763211 1111 0111 112222 5777777777788999
Q ss_pred EeCCCC
Q 043540 355 FDKGRK 360 (437)
Q Consensus 355 yd~~~~ 360 (437)
||....
T Consensus 219 wd~~~~ 224 (434)
T 2oit_A 219 YLPTLQ 224 (434)
T ss_dssp ECTTCC
T ss_pred EccCCc
Confidence 999843
No 334
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=47.69 E-value=1.7e+02 Score=26.99 Aligned_cols=20 Identities=10% Similarity=0.190 Sum_probs=15.8
Q ss_pred CCEEEEEeCCCCeEEEEeCCC
Q 043540 339 NNELYAADHEKEEVRKFDKGR 359 (437)
Q Consensus 339 ~~~ly~~gg~~~~v~~yd~~~ 359 (437)
++++++.| ....|.+||..+
T Consensus 188 ~~~~l~s~-~d~~i~iwd~~~ 207 (447)
T 3dw8_B 188 DYETYLSA-DDLRINLWHLEI 207 (447)
T ss_dssp TSSEEEEE-CSSEEEEEETTE
T ss_pred CCCEEEEe-CCCeEEEEECCC
Confidence 56777777 678899999983
No 335
>4fj6_A Glycoside hydrolase family 33, candidate sialidas; bacterial neuraminidase repeat; HET: MSE GOL; 1.90A {Parabacteroides distasonis}
Probab=46.80 E-value=1.7e+02 Score=28.85 Aligned_cols=139 Identities=15% Similarity=0.181 Sum_probs=66.2
Q ss_pred CCEEEEEecccCCCCccCCeEEEEEC-CCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE-CCEEEEEe--CCCC-
Q 043540 276 DGKFYVIGGIGEGSSAMLTDVEMYDL-ETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV-NNELYAAD--HEKE- 350 (437)
Q Consensus 276 ~g~lyv~GG~~~~~~~~~~~v~~yd~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ly~~g--g~~~- 350 (437)
+|.|.+-.-........ .....|.. .-.+|+....++..... +.++.. +|+|++.- ....
T Consensus 335 dGrLv~P~~~~~~~g~~-~s~i~~S~D~G~TW~~~~~~~~~~~e--------------~~vve~~dG~L~~~~R~~~~g~ 399 (523)
T 4fj6_A 335 DGTLVFPIQFIDATRVP-NAGIMYSKDRGKTWHLHNLARTNTTE--------------AQVAEVEPGVLMLNMRDNRGGS 399 (523)
T ss_dssp TSCEEEEEEEECTTSCE-EEEEEEESSTTSSCEECCCSEETEEE--------------EEEEEEETTEEEEEEEETTCSB
T ss_pred CCeEEEEEEEEcCCCCE-EEEEEEECCCCCeEEECCCCCccccC--------------CEEEEecCCEEEEEEEecCCCc
Confidence 67766543222111111 23344543 45789987655433222 445554 78999842 1112
Q ss_pred -eEEEEeCCCCcEEEcc----CCCCcccCCCcccEEEEEe------CCEEEEEcCCCCCCCCeeEEEeeecCCCCCCcee
Q 043540 351 -EVRKFDKGRKLWRTLG----RLPEQASSMNGWGLAFRAC------GDQLIVIGGPRDSGGGIVELNGWVPDEGPPHWKL 419 (437)
Q Consensus 351 -~v~~yd~~~~~W~~v~----~lp~~~~~~~~~~~a~~~~------~~~l~v~GG~~~~~~~~~~~~~~~~d~~~~~W~~ 419 (437)
.++.-.-.-.+|.+.. .++.+.. .+..+..- +..++++........ .....++.-..+..+|..
T Consensus 400 r~v~~S~D~G~TWt~~~~~~~~L~~P~c----~~Sii~~~~~~~~~g~~~lL~snp~~~~~-R~~l~v~~S~D~G~TW~~ 474 (523)
T 4fj6_A 400 RAVATTKDLGKTWTEHPSSRSALQESVC----MASLIKVNAKDNITGKDLLLFSNPNTTKG-RNHITIKASLDGGLTWPT 474 (523)
T ss_dssp CEEEEESSTTSSCEECTTTTTSSBCSSC----CCEEEEECGGGSTTCSCEEEEEEECCSSS-SCCEEEEEESSTTSCCCG
T ss_pred EEEEEECCCCCccCcCcCccccCCCCCc----ccEEEEEecccCCCCCcEEEEEccCCCCc-cccceEEEeCCCCCCCcc
Confidence 2333333456899864 4554432 12222221 235666655432211 122334443335679987
Q ss_pred cCcc---CCCceEeeeEE
Q 043540 420 LARQ---PMCGFVFNCTV 434 (437)
Q Consensus 420 l~~~---p~~~~~~~~~v 434 (437)
...+ ..+.+.|+|.+
T Consensus 475 ~~~v~~~~~~~~~Ys~l~ 492 (523)
T 4fj6_A 475 EHQVLLDEAEGWGYSCLS 492 (523)
T ss_dssp GGEEEEECSCCCCCEEEE
T ss_pred CceEEEcCCCCcccceEE
Confidence 5322 23457788754
No 336
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=45.15 E-value=2.5e+02 Score=28.20 Aligned_cols=54 Identities=13% Similarity=0.015 Sum_probs=29.6
Q ss_pred ceEEEeccCCCCe---eeCCCCCCccccccCCceeEEeCCEEEEEcCccCCceEEEEECCCCceecCC
Q 043540 149 KEWEAFDPIHHRW---MHLPPMNASDCFMCADKESLAVGTELLVFGKEVHGNAIYRYNLLTNTWSTGM 213 (437)
Q Consensus 149 ~~~~~yDp~~~~W---~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~ 213 (437)
..++.+|..+++. ..++ ... .....+-+|+.++++. .+.++++|..++.-..+.
T Consensus 90 ~~i~~~d~~~g~~~~~~~l~---~~~-----~~~~~SPDG~~la~~~---~~~i~~~~~~~g~~~~l~ 146 (719)
T 1z68_A 90 ATYYIYDLSNGEFVRGNELP---RPI-----QYLCWSPVGSKLAYVY---QNNIYLKQRPGDPPFQIT 146 (719)
T ss_dssp EEEEEEETTTTEECCSSCCC---SSB-----CCEEECSSTTCEEEEE---TTEEEEESSTTSCCEECC
T ss_pred eEEEEEECCCCccccceecC---ccc-----ccceECCCCCEEEEEE---CCeEEEEeCCCCCcEEEe
Confidence 5678889888876 3332 111 1111233444444442 347888888777665543
No 337
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=38.96 E-value=3.5e+02 Score=29.69 Aligned_cols=161 Identities=12% Similarity=0.090 Sum_probs=81.8
Q ss_pred ceEEEEECCCCcEEecCC--CCcCCcCeeEEEE--C---CEEEEEecccCC---CCccCCeEEEEECCCCceEecCCCCC
Q 043540 245 KSAELYNSITGTWMPISS--MHKARKMCSGVFM--D---GKFYVIGGIGEG---SSAMLTDVEMYDLETGKWTQITDMFP 314 (437)
Q Consensus 245 ~~~~~yd~~t~~W~~~~~--~~~~r~~~~~~~~--~---g~lyv~GG~~~~---~~~~~~~v~~yd~~~~~W~~~~~~~~ 314 (437)
+.+..+|+.+ |+.+.. +...-...+++.+ . ..++++|-.... .......+..|+...++.+.+.....
T Consensus 807 s~i~lidp~t--~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v 884 (1158)
T 3ei3_A 807 HNLLIIDQHT--FEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEV 884 (1158)
T ss_dssp EEEEEEETTT--CCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEeCCC--CeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEc
Confidence 4566778754 554432 2221122223322 1 345566542211 11234568888887666665542221
Q ss_pred cccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeCCEEEEEcC
Q 043540 315 ARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACGDQLIVIGG 394 (437)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~l~v~GG 394 (437)
. +...+++.++|+|.+. .++.+.+|+...++--... .... .+-....+...+++|+ +|-
T Consensus 885 ~--------------g~v~al~~~~g~Lla~--ig~~l~vy~l~~~~~L~~~---~~~~-~~i~~~~l~~~~~~I~-vgD 943 (1158)
T 3ei3_A 885 K--------------GAVYSMVEFNGKLLAS--INSTVRLYEWTTEKELRTE---CNHY-NNIMALYLKTKGDFIL-VGD 943 (1158)
T ss_dssp S--------------SCEEEEEEETTEEEEE--ETTEEEEEEECTTSCEEEE---EEEC-CCSCEEEEEEETTEEE-EEE
T ss_pred C--------------CcCEEEeeeCCEEEEE--cCCEEEEEECCCCceEEEE---eecc-ccEEEEEEeccCCEEE-EEE
Confidence 1 1124577889976654 4578899988766532211 0000 0000123334567654 443
Q ss_pred CCCCCCCeeEEEeeecCCCCCCceecCccCCCceEeeeEE
Q 043540 395 PRDSGGGIVELNGWVPDEGPPHWKLLARQPMCGFVFNCTV 434 (437)
Q Consensus 395 ~~~~~~~~~~~~~~~~d~~~~~W~~l~~~p~~~~~~~~~v 434 (437)
.. -.+.+..|++..++-..+++-..++...++..
T Consensus 944 ~~------~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ 977 (1158)
T 3ei3_A 944 LM------RSVLLLAYKPMEGNFEEIARDFNPNWMSAVEI 977 (1158)
T ss_dssp SS------BCEEEEEEETTTTEEEEEEECCSCBCEEEEEE
T ss_pred hh------heEEEEEEEcCCCeEEEEEeecccccEEEEEE
Confidence 22 23566678888888888877666665555443
No 338
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=36.69 E-value=2.6e+02 Score=25.95 Aligned_cols=93 Identities=20% Similarity=0.349 Sum_probs=52.5
Q ss_pred ceEEEE--ECCCCcEEecCCC--C--cC-CcCeeEEEE----CCEEEEEecccCCCCccCCeEEEEEC---CCCceE--e
Q 043540 245 KSAELY--NSITGTWMPISSM--H--KA-RKMCSGVFM----DGKFYVIGGIGEGSSAMLTDVEMYDL---ETGKWT--Q 308 (437)
Q Consensus 245 ~~~~~y--d~~t~~W~~~~~~--~--~~-r~~~~~~~~----~g~lyv~GG~~~~~~~~~~~v~~yd~---~~~~W~--~ 308 (437)
+.+.+| |+.+++++.+... | .. +.-++.+.+ .+++|++-... . ..++.|++ ..++.+ .
T Consensus 99 n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k---~---G~~~q~~l~~~~~g~~~~~l 172 (355)
T 3amr_A 99 NTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK---E---GEFEQYELKADKNGYISGKK 172 (355)
T ss_dssp CEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECS---S---SEEEEEEEEECTTSCEEEEE
T ss_pred CeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECC---C---CeEEEEEEEeCCCCcccceE
Confidence 667777 8889999999764 4 33 555666664 36666664332 1 24555555 343332 2
Q ss_pred cCCCCCcccCCCCcccccccCCCCCEEEEE--CCEEEEEeCCCCeEEEEeCC
Q 043540 309 ITDMFPARIGSDGVSVISAAGEAPPLLAVV--NNELYAADHEKEEVRKFDKG 358 (437)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ly~~gg~~~~v~~yd~~ 358 (437)
+..+..+- . +..+++- .++||+-.-. ..||+||.+
T Consensus 173 VR~f~lgs-q-------------~EgcvvDd~~g~Lyv~eEd-~GIw~~da~ 209 (355)
T 3amr_A 173 VRAFKMNS-Q-------------TEGMAADDEYGRLYIAEED-EAIWKFSAE 209 (355)
T ss_dssp EEEEECSS-C-------------EEEEEEETTTTEEEEEETT-TEEEEEECS
T ss_pred EEEecCCC-C-------------cceEEEcCCCCeEEEeccc-ceEEEEeCC
Confidence 22221111 1 1234443 4799998654 569999954
No 339
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=36.13 E-value=2.7e+02 Score=25.82 Aligned_cols=143 Identities=8% Similarity=0.008 Sum_probs=74.9
Q ss_pred CceEEEEECCC--CceecCCCCC-----CCccceeeEEEC---C--EEEEEeccCCCCCCCceEEEEECCCCcEEecCCC
Q 043540 196 GNAIYRYNLLT--NTWSTGMTMN-----TPRCLFGSASLG---E--IAILAGGCDPRGKLLKSAELYNSITGTWMPISSM 263 (437)
Q Consensus 196 ~~~v~~yd~~t--~~W~~~~~~~-----~~r~~~~~~~~~---~--~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 263 (437)
...+++||+.+ .+-+++.-.. ..-.-|+..+.. + +|||+--.. ....-.++.+|+.++..+.+...
T Consensus 82 ~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~--~~s~ielf~~d~~~~~~~~~~~~ 159 (355)
T 3sre_A 82 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPG--SSSTVEVFKFQEEEKSLLHLKTI 159 (355)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECST--TCCEEEEEEEETTTTEEEEEEEE
T ss_pred CCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCC--CCCeEEEEEEECCCCEEEEEecc
Confidence 45789999873 3444443211 122345555542 3 577774321 11123344566666665544332
Q ss_pred ---CcCCcCeeEEEECCEEEEEecccCCC----------CccCCeEEEEECCCCceEecC-CCCCcccCCCCcccccccC
Q 043540 264 ---HKARKMCSGVFMDGKFYVIGGIGEGS----------SAMLTDVEMYDLETGKWTQIT-DMFPARIGSDGVSVISAAG 329 (437)
Q Consensus 264 ---~~~r~~~~~~~~~g~lyv~GG~~~~~----------~~~~~~v~~yd~~~~~W~~~~-~~~~~~~~~~~~~~~~~~~ 329 (437)
+..+..-..+.-+|.+|+-+..-... ......++.||+. +.+.+. .+..+
T Consensus 160 ~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~~l~~p-------------- 223 (355)
T 3sre_A 160 RHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEGFDFA-------------- 223 (355)
T ss_dssp CCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEEEESSE--------------
T ss_pred ccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEeecCCccc--------------
Confidence 22233344555689999865321000 1123568888884 333332 11111
Q ss_pred CCCCEEEEE-C-CEEEEEeCCCCeEEEEeCCC
Q 043540 330 EAPPLLAVV-N-NELYAADHEKEEVRKFDKGR 359 (437)
Q Consensus 330 ~~~~~~~~~-~-~~ly~~gg~~~~v~~yd~~~ 359 (437)
-+++.. + ..||+.......|++||...
T Consensus 224 ---NGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 224 ---NGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp ---EEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred ---CcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 234443 3 47999987788999999764
No 340
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=36.00 E-value=4.1e+02 Score=27.97 Aligned_cols=26 Identities=15% Similarity=0.055 Sum_probs=21.0
Q ss_pred CCEEEEEeCCCCeEEEEeCCCCcEEE
Q 043540 339 NNELYAADHEKEEVRKFDKGRKLWRT 364 (437)
Q Consensus 339 ~~~ly~~gg~~~~v~~yd~~~~~W~~ 364 (437)
+|..++.|+..+.|..||..+.+-..
T Consensus 222 dg~~lasgs~Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 222 NSLHIITIHEDNSLVFWDANSGHMIM 247 (902)
T ss_dssp TSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred CCCEEEEEECCCeEEEEECCCCcEEE
Confidence 67788888888889999998876544
No 341
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=35.03 E-value=4.2e+02 Score=27.85 Aligned_cols=150 Identities=6% Similarity=0.012 Sum_probs=71.9
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEecCCC
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPISSM 263 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~ 263 (437)
++.+++.|+.. ..+.+||..+..-... ......-..++...++.++.|+.+ ..+.++|..+++-... +
T Consensus 28 dg~~lAsgs~D--g~I~lw~~~~~~~~~~--~~~~~~V~~l~fspg~~L~S~s~D------~~v~lWd~~~~~~~~~--~ 95 (902)
T 2oaj_A 28 TQNLLAIATVT--GEVHIYGQQQVEVVIK--LEDRSAIKEMRFVKGIYLVVINAK------DTVYVLSLYSQKVLTT--V 95 (902)
T ss_dssp TTTEEEEEETT--SEEEEECSTTCEEEEE--CSSCCCEEEEEEETTTEEEEEETT------CEEEEEETTTCSEEEE--E
T ss_pred CCCEEEEEeCC--CEEEEEeCCCcEEEEE--cCCCCCEEEEEEcCCCEEEEEECc------CeEEEEECCCCcEEEE--E
Confidence 34444444322 3566676654432211 111111122222335544555533 6788999988753211 1
Q ss_pred CcCCcCeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCCceEecC--CCC---CcccCCCCcccccccCCCCCEEE
Q 043540 264 HKARKMCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQIT--DMF---PARIGSDGVSVISAAGEAPPLLA 336 (437)
Q Consensus 264 ~~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~ 336 (437)
... ....++.+ +++..++|+.+ ..+..||+.+.+-.... .+. ....+|.+ ....++
T Consensus 96 ~~~-~~V~~v~~sp~g~~l~sgs~d-------g~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~---------~V~sl~ 158 (902)
T 2oaj_A 96 FVP-GKITSIDTDASLDWMLIGLQN-------GSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLS---------PIVSIQ 158 (902)
T ss_dssp ECS-SCEEEEECCTTCSEEEEEETT-------SCEEEEETTTTEEEEEEECCHHHHHTCSSSCCC---------CCCEEE
T ss_pred cCC-CCEEEEEECCCCCEEEEEcCC-------CcEEEEECCCCccccceeccccccccccccCCC---------CeEEEE
Confidence 111 12223322 56666666654 24888999887643111 000 00011100 012334
Q ss_pred EE--CCEEEEEeCCCCeEEEEeCCCCcEE
Q 043540 337 VV--NNELYAADHEKEEVRKFDKGRKLWR 363 (437)
Q Consensus 337 ~~--~~~ly~~gg~~~~v~~yd~~~~~W~ 363 (437)
.. ++.++++|+....| .||..+++-.
T Consensus 159 ~sp~~~~~l~~g~~dg~v-lWd~~~~~~~ 186 (902)
T 2oaj_A 159 WNPRDIGTVLISYEYVTL-TYSLVENEIK 186 (902)
T ss_dssp EETTEEEEEEEECSSCEE-EEETTTTEEE
T ss_pred EccCCCCEEEEEeCCCcE-EEECCCCceE
Confidence 43 23577778777888 9999887644
No 342
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=34.48 E-value=2.7e+02 Score=25.37 Aligned_cols=73 Identities=14% Similarity=0.161 Sum_probs=41.5
Q ss_pred CCEEEEEecccC---CCCccCCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEE-C-CEEEEEeCCCC
Q 043540 276 DGKFYVIGGIGE---GSSAMLTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV-N-NELYAADHEKE 350 (437)
Q Consensus 276 ~g~lyv~GG~~~---~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~ly~~gg~~~ 350 (437)
++++|+....+. ........+.++|+++.+ .+..++.+. . ..++.. + ..||+.+. +
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~--~v~~i~~~~-p--------------~~ia~spdg~~l~v~n~--~ 325 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ--RVARIPGRD-A--------------LSMTIDQQRNLMLTLDG--G 325 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE--EEEEEECTT-C--------------CEEEEETTTTEEEEECS--S
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECCCCc--EEEEEecCC-e--------------eEEEECCCCCEEEEeCC--C
Confidence 378998754220 011124579999998875 333222222 2 334443 3 46666654 8
Q ss_pred eEEEEeCCCCcEEEccC
Q 043540 351 EVRKFDKGRKLWRTLGR 367 (437)
Q Consensus 351 ~v~~yd~~~~~W~~v~~ 367 (437)
.|.+||.++.+=+.+..
T Consensus 326 ~v~v~D~~t~~l~~~~~ 342 (361)
T 2oiz_A 326 NVNVYDISQPEPKLLRT 342 (361)
T ss_dssp CEEEEECSSSSCEEEEE
T ss_pred eEEEEECCCCcceeeEE
Confidence 89999998862244444
No 343
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=32.56 E-value=54 Score=30.47 Aligned_cols=27 Identities=11% Similarity=0.126 Sum_probs=18.9
Q ss_pred ECCEEEEEe-CCCCeEEEEeCCCCcEEE
Q 043540 338 VNNELYAAD-HEKEEVRKFDKGRKLWRT 364 (437)
Q Consensus 338 ~~~~ly~~g-g~~~~v~~yd~~~~~W~~ 364 (437)
.++.+|++. .....++.+|.+++.|+.
T Consensus 54 ~~~~~~vv~p~~dG~l~a~~~~~G~~~~ 81 (339)
T 2be1_A 54 ETYETLIIEPFGDGNIYYFNAHQGLQKL 81 (339)
T ss_dssp TSSEEEEECCSTTTEEEEEETTTEEEEE
T ss_pred cCCcEEEEEECCCCEEEEEECCCCcEEe
Confidence 356777775 356788888888776653
No 344
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=31.75 E-value=3.2e+02 Score=29.76 Aligned_cols=95 Identities=16% Similarity=0.163 Sum_probs=50.0
Q ss_pred CEEEEEeC----CCCeEEEEeCCCCcEEEccCCCCcccCCCcccEEEEEeC------CEEEEEcCCCCCC-CCeeEEEee
Q 043540 340 NELYAADH----EKEEVRKFDKGRKLWRTLGRLPEQASSMNGWGLAFRACG------DQLIVIGGPRDSG-GGIVELNGW 408 (437)
Q Consensus 340 ~~ly~~gg----~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~------~~l~v~GG~~~~~-~~~~~~~~~ 408 (437)
+..+++|. ..+.+++|......|.....+..... ...||.++++.+ +.|+++|...... ...-.+.++
T Consensus 398 ~~~~v~GAP~~~~~G~V~i~~~~~~~~~~~~~~~g~~~-gs~fG~sva~~DvngDG~~DllvvGAP~~~~~~~~G~Vyvy 476 (1095)
T 3k6s_A 398 VQSLVLGAPRYQHTGKAVIFTQVSRQWRMKAEVTGTQI-GSYFGASLCSVDVDSDGSTDLVLIGAPHYYEQTRGGQVSVC 476 (1095)
T ss_dssp SCEEEEEETTGGGTCEEEEEECCTTTCCEEEEECCSST-TSCTTSCEEEECSSSSSSCCEEEEECSSCCSSCCCBCEEEE
T ss_pred ceEEEEEcccccccceEEEEEecCCcceEEeecccCcc-cCcCCceEEEEEeCCCCCccEEEECCccccCcCCCCEEEEE
Confidence 34567773 24679999988888987654332211 123455554421 3577888664321 111223344
Q ss_pred ecCCCCCCceecCcc------CCCceEeeeEEe
Q 043540 409 VPDEGPPHWKLLARQ------PMCGFVFNCTVM 435 (437)
Q Consensus 409 ~~d~~~~~W~~l~~~------p~~~~~~~~~v~ 435 (437)
..+.....|.....+ +.++|+++.++.
T Consensus 477 ~~~~~~~~~~~~~~l~g~~~~~~~~FG~sva~~ 509 (1095)
T 3k6s_A 477 PLPRGWRRWWCDAVLYGEQGHPWGRFGAALTVL 509 (1095)
T ss_dssp ECCSSTTCCCSCSSCCCCCSCSSCCBTSCEEEE
T ss_pred EeCCCCcceeeeEEeecccCCccccCccceEee
Confidence 334333567744322 346777766654
No 345
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=31.24 E-value=3.2e+02 Score=25.34 Aligned_cols=154 Identities=14% Similarity=0.101 Sum_probs=76.7
Q ss_pred CCEEEEEeccCCCCCCCceEEEEECCCCcE-EecCCCC-cCCcCee-EEEECCEEEEEecccC-----CCCccCCeEEEE
Q 043540 228 GEIAILAGGCDPRGKLLKSAELYNSITGTW-MPISSMH-KARKMCS-GVFMDGKFYVIGGIGE-----GSSAMLTDVEMY 299 (437)
Q Consensus 228 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W-~~~~~~~-~~r~~~~-~~~~~g~lyv~GG~~~-----~~~~~~~~v~~y 299 (437)
++.+++.|+.| ..+.++|..+++- ..+..-. .....+. +..-+|++.+.+.... ........+..+
T Consensus 192 ~~~~LaSgS~D------~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklW 265 (356)
T 2w18_A 192 MQEALLGTTIM------NNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVI 265 (356)
T ss_dssp STTEEEEEETT------SEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEE
T ss_pred CCceEEEecCC------CcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEE
Confidence 34666666654 6789999999874 3332111 1112222 2344888877655320 012233457778
Q ss_pred ECCCCceEecC--CCCCcccCCCCcccccccCCCCCEEEEECCEEEEEeCCCCeEEEEeCCCCcEEEccCCCCcccCCCc
Q 043540 300 DLETGKWTQIT--DMFPARIGSDGVSVISAAGEAPPLLAVVNNELYAADHEKEEVRKFDKGRKLWRTLGRLPEQASSMNG 377 (437)
Q Consensus 300 d~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~ 377 (437)
|+.+++-..+- .+|.+.... ......++.+.+.|...+.|.+||..+++-... +.......
T Consensus 266 d~~tgk~l~v~~~~~p~Gh~~~-------------~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~t--L~gH~~~v-- 328 (356)
T 2w18_A 266 NPKTTLSVGVMLYCLPPGQAGR-------------FLEGDVKDHCAAAILTSGTIAIWDLLLGQCTAL--LPPVSDQH-- 328 (356)
T ss_dssp ETTTTEEEEEEEECCCTTCCCC-------------EEEEEEETTEEEEEETTSCEEEEETTTCSEEEE--ECCC--CC--
T ss_pred ECCCCEEEEEEEeeccCCCcce-------------eEccccCCCEEEEEcCCCcEEEEECCCCcEEEE--ecCCCCCe--
Confidence 88877543221 123333220 011122345566666677899999999875442 21111000
Q ss_pred ccEEEEEeCCEEEEEcCCCCCCCCeeEEEeeec
Q 043540 378 WGLAFRACGDQLIVIGGPRDSGGGIVELNGWVP 410 (437)
Q Consensus 378 ~~~a~~~~~~~l~v~GG~~~~~~~~~~~~~~~~ 410 (437)
+......-++++++.|+.+ ..+.+|++
T Consensus 329 vs~vafSPDG~~LaSGS~D------~TIklWd~ 355 (356)
T 2w18_A 329 WSFVKWSGTDSHLLAGQKD------GNIFVYHY 355 (356)
T ss_dssp CCEEEECSSSSEEEEECTT------SCEEEEEE
T ss_pred EEEEEECCCCCEEEEEECC------CcEEEecC
Confidence 1111122356777787755 24677764
No 346
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=30.87 E-value=3.7e+02 Score=25.95 Aligned_cols=56 Identities=18% Similarity=0.091 Sum_probs=30.7
Q ss_pred CC-EEEEEeCCCCeEEEEeCC-CCcEEEccCCCCc-----------ccC-CCcccEEEEEeCCEEEEEcC
Q 043540 339 NN-ELYAADHEKEEVRKFDKG-RKLWRTLGRLPEQ-----------ASS-MNGWGLAFRACGDQLIVIGG 394 (437)
Q Consensus 339 ~~-~ly~~gg~~~~v~~yd~~-~~~W~~v~~lp~~-----------~~~-~~~~~~a~~~~~~~l~v~GG 394 (437)
+| .||+.--..+.|.+||.. ..+.+.++.++.. ... ....++++..-+.+|||.-+
T Consensus 331 DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaNs 400 (462)
T 2ece_A 331 DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTNS 400 (462)
T ss_dssp TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEECC
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEcC
Confidence 44 577776557899999975 3345544433322 000 00013444444678999874
No 347
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=28.75 E-value=26 Score=21.82 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=18.6
Q ss_pred CCCCCCCCCHHHHHHHhhccCcc
Q 043540 85 SNSLIPELGRDITINCLLRCSRS 107 (437)
Q Consensus 85 ~~~~~~~LP~dl~~~~L~rlP~~ 107 (437)
....+..||.|+.+++|+.-.+.
T Consensus 17 D~eVF~~LP~dIQ~Ells~~~~e 39 (48)
T 2kwv_A 17 DQEVFKQLPADIQEEILSGKSRE 39 (48)
T ss_dssp CGGGTTTSCHHHHHHHTTCCCSC
T ss_pred CHHHHHHCcHHHHHHHHhcchHH
Confidence 45678899999999999876554
No 348
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=28.59 E-value=1.2e+02 Score=28.71 Aligned_cols=64 Identities=13% Similarity=0.099 Sum_probs=39.2
Q ss_pred CCeEEEEECCCC--ceEecCCCCCcccCCCCcccccccCCCCCEEEEE---------CCEEEEEeCCCCeEEEEeCCCC-
Q 043540 293 LTDVEMYDLETG--KWTQITDMFPARIGSDGVSVISAAGEAPPLLAVV---------NNELYAADHEKEEVRKFDKGRK- 360 (437)
Q Consensus 293 ~~~v~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ly~~gg~~~~v~~yd~~~~- 360 (437)
...+..||+.++ +=...-.+|...... ......+++- ++.+|+.+.....|.+||..++
T Consensus 122 ~pkLv~~DL~t~~~~li~~y~~p~~~~~~---------~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~ 192 (381)
T 3q6k_A 122 RPAIVAYDLKQPNYPEVVRYYFPTRLVEK---------PTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQD 192 (381)
T ss_dssp CCEEEEEESSSTTCCEEEEEECCGGGCCC---------GGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTE
T ss_pred CceEEEEECCCCCceeEEEEECCHHhccc---------CCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCc
Confidence 347899999999 654333333221110 0000223333 4678999877789999999986
Q ss_pred cEEEc
Q 043540 361 LWRTL 365 (437)
Q Consensus 361 ~W~~v 365 (437)
.|+..
T Consensus 193 swRv~ 197 (381)
T 3q6k_A 193 SWNVT 197 (381)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 48766
No 349
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=27.53 E-value=5.1e+02 Score=26.49 Aligned_cols=147 Identities=5% Similarity=-0.011 Sum_probs=78.8
Q ss_pred ceEEEeccCC--CCeeeCCCCCCccccccCCceeEEeCCEEEEEcCcc--------CCceEEEEECCC--------Ccee
Q 043540 149 KEWEAFDPIH--HRWMHLPPMNASDCFMCADKESLAVGTELLVFGKEV--------HGNAIYRYNLLT--------NTWS 210 (437)
Q Consensus 149 ~~~~~yDp~~--~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~--------~~~~v~~yd~~t--------~~W~ 210 (437)
++++..|... ..|.++ .+|.... .+...++.+|+..... ....+.++|..+ ..|+
T Consensus 269 ~~~~~~~~~~~~~~~~~l-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 341 (711)
T 4hvt_A 269 YDNYILDTKYKNLKLQKI-NMPSDAT------LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLK 341 (711)
T ss_dssp EEEEEEECSSSSCEEEEC-CSCTTCE------EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCE
T ss_pred eeEEEEcCCCCCCcceEe-ecCCcce------EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccce
Confidence 4455555442 567766 2232211 1245688999875322 345788888754 4687
Q ss_pred c-CCCCCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcEEec--CCCCcCCcCeeEEEE---CCEEEEEec
Q 043540 211 T-GMTMNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTWMPI--SSMHKARKMCSGVFM---DGKFYVIGG 284 (437)
Q Consensus 211 ~-~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~--~~~~~~r~~~~~~~~---~g~lyv~GG 284 (437)
. +++-. .+..-.....++.+++..-.+ ....+.++|+.++.|... ..+|.. ...+.... ++.+++...
T Consensus 342 ~~~~~~~-~~~l~~~~~~~~~l~~~~~~~----~~~~l~~~~~~~g~~~~~~~i~lp~~-~~~~~~~~~~~~~~~~~~~s 415 (711)
T 4hvt_A 342 ILFTPTA-NEVFNFISTTKDRVFLATYDN----VVAKVVTFTLENEQWTKPVVLKLPYQ-NAIFGMSSYEEEEEALITIE 415 (711)
T ss_dssp EEECCCT-TEEEEEEEECSSCEEEEEEET----TEEEEEEECEETTEECCCEEECCCST-TCEEEEECCTTCSCEEEEEE
T ss_pred EEECCCC-CCeEEEEEEECCEEEEEEEEC----CEEEEEEEECCCCceEEEeccCCCCC-eEEEEEeecCcCCEEEEEEe
Confidence 6 33321 233334455577777765433 236788999888888432 234422 12222222 234444322
Q ss_pred ccCCCCccCCeEEEEECCCCceEecCCCC
Q 043540 285 IGEGSSAMLTDVEMYDLETGKWTQITDMF 313 (437)
Q Consensus 285 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~ 313 (437)
. ......++.||+. ++++.+...+
T Consensus 416 s----~~~P~~~~~~d~~-~~~~~l~~~~ 439 (711)
T 4hvt_A 416 N----SIVPPTIYLWVKT-HELKIIRKAL 439 (711)
T ss_dssp C----SSSCCEEEEECTT-SCEEEEECCS
T ss_pred c----CCCCCEEEEEeCC-CcEEEEecCC
Confidence 1 2234568889988 7777765443
No 350
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=27.12 E-value=3.9e+02 Score=25.00 Aligned_cols=186 Identities=13% Similarity=0.092 Sum_probs=90.6
Q ss_pred CceEEEEECCCC--ceec---CC-CCCCCccceeeEEEC----------CEEEEEeccCCCCCCCceEEEEECCCCc-EE
Q 043540 196 GNAIYRYNLLTN--TWST---GM-TMNTPRCLFGSASLG----------EIAILAGGCDPRGKLLKSAELYNSITGT-WM 258 (437)
Q Consensus 196 ~~~v~~yd~~t~--~W~~---~~-~~~~~r~~~~~~~~~----------~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~ 258 (437)
...+.+||+.|+ +-.+ ++ +.-.+.+.+.-.+++ +.+|+.-- ....+.+||..+++ |+
T Consensus 122 ~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~------~~~gLIVydl~~~~swR 195 (381)
T 3q6k_A 122 RPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNF------LRGALFIYDHKKQDSWN 195 (381)
T ss_dssp CCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEET------TTTEEEEEETTTTEEEE
T ss_pred CceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcC------CCCcEEEEECCCCcEEE
Confidence 357899999999 5432 22 222233444433333 46777632 13689999999876 88
Q ss_pred ecCCCCcCCcCeeEEEECCEEEEEe-ccc----CCCCccCCeEEEEECCCC-ceEecCC--CCCcccCCCCcccccccCC
Q 043540 259 PISSMHKARKMCSGVFMDGKFYVIG-GIG----EGSSAMLTDVEMYDLETG-KWTQITD--MFPARIGSDGVSVISAAGE 330 (437)
Q Consensus 259 ~~~~~~~~r~~~~~~~~~g~lyv~G-G~~----~~~~~~~~~v~~yd~~~~-~W~~~~~--~~~~~~~~~~~~~~~~~~~ 330 (437)
.+.....+- ......++|+-+-+. |.. ............|.+-+. +.-.++. +...........+-. -+.
T Consensus 196 v~~~~~~pd-~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~-kg~ 273 (381)
T 3q6k_A 196 VTHPTFKAE-RPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGN-RGK 273 (381)
T ss_dssp EECGGGSCC-SCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEE-CCT
T ss_pred EccCCCccc-cCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeee-cCC
Confidence 763221221 223344555544321 221 000011123444554443 3333321 111100100000000 000
Q ss_pred CCCE-EEEE---CCEEEEEeCCCCeEEEEeCCC-----CcEEEccCCCCcccCCCcccEEEEE-eCCEEEEEcC
Q 043540 331 APPL-LAVV---NNELYAADHEKEEVRKFDKGR-----KLWRTLGRLPEQASSMNGWGLAFRA-CGDQLIVIGG 394 (437)
Q Consensus 331 ~~~~-~~~~---~~~ly~~gg~~~~v~~yd~~~-----~~W~~v~~lp~~~~~~~~~~~a~~~-~~~~l~v~GG 394 (437)
...+ ..++ +|.||+..-..+.|.++|+.+ +....+..-+ ... |...+.+ .++.||++-.
T Consensus 274 ~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~-~l~----~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 274 YNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSS-RFV----FGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp TCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECT-TCC----SEEEEEECTTSCEEEEEC
T ss_pred CCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECC-Ccc----ccCeEEECCCCeEEEEEC
Confidence 0122 2233 488999888889999999987 4557766444 221 4444444 3568888753
No 351
>2ydt_A EXO-1,5-alpha-L-arabinofuranobiosidase; hydrolase; 1.60A {Gibberella zeae} PDB: 2w5n_A* 2w5o_A* 2ydp_A
Probab=26.93 E-value=2.8e+02 Score=25.76 Aligned_cols=54 Identities=13% Similarity=0.243 Sum_probs=34.6
Q ss_pred CCEEEEEeCCCCeEEEEeCCC--CcEEEccCCCCcccCCCcccEEEEEeC---CEEEEEcCCCC
Q 043540 339 NNELYAADHEKEEVRKFDKGR--KLWRTLGRLPEQASSMNGWGLAFRACG---DQLIVIGGPRD 397 (437)
Q Consensus 339 ~~~ly~~gg~~~~v~~yd~~~--~~W~~v~~lp~~~~~~~~~~~a~~~~~---~~l~v~GG~~~ 397 (437)
+|+|++.+.....|++-+-.- ++|..+.. |... +|.-++...+ +.|+|+||-..
T Consensus 287 ~g~l~~s~~~~~~v~~~~~~g~~~~W~~~~~-~~~~----~Ys~~l~~~~~~~~~l~~~~~~~~ 345 (367)
T 2ydt_A 287 NGTIVVSCGTRSEIFTNQALGDASAWKKWDV-PQPT----AYTRSLLTFQKDPDLLMIMGAGIL 345 (367)
T ss_dssp TCEEEEECSSCSCEEEESSTTCTTCCEEECC-SSCC----CTTCEEEEETTEEEEEEEEECCCS
T ss_pred CCeEEEEcCCCceEEEECCCCCCCcceeccC-CCCC----CCCcceEecCCCCCEEEEecCccc
Confidence 689999987666666554433 48999865 3332 3455556664 38888886543
No 352
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=25.69 E-value=84 Score=29.14 Aligned_cols=109 Identities=13% Similarity=0.033 Sum_probs=53.0
Q ss_pred eCCEEEEEcCccCCceEEEEECCCC--ceecCCC----CCCCccceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCc
Q 043540 183 VGTELLVFGKEVHGNAIYRYNLLTN--TWSTGMT----MNTPRCLFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGT 256 (437)
Q Consensus 183 ~~~~lyv~GG~~~~~~v~~yd~~t~--~W~~~~~----~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 256 (437)
+++.+|+-. ....++.+|..++ .|+.-.. +-..+.. ....++.+|++.... ...++.||..++.
T Consensus 9 ~~~~V~v~t---~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~--~~~~~~~~~vv~p~~-----dG~l~a~~~~~G~ 78 (339)
T 2be1_A 9 LSDILIAAD---VEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEP--SRLETYETLIIEPFG-----DGNIYYFNAHQGL 78 (339)
T ss_dssp EEEEEEEEE---TTSCEEEEETTTTEEEEEECGGGSCCSEECCCS--CTTTSSEEEEECCST-----TTEEEEEETTTEE
T ss_pred eCCEEEEEe---CCCeEEEEECCCCcEEEEecCCccCCcEEecCC--ccccCCcEEEEEECC-----CCEEEEEECCCCc
Confidence 445555543 2346777887766 4764322 1111110 011355677664211 2567889988887
Q ss_pred EEecCCCCcCC------cCeeEEE-------ECCEEEEEecccCCCCccCCeEEEEECCCCc--eEec
Q 043540 257 WMPISSMHKAR------KMCSGVF-------MDGKFYVIGGIGEGSSAMLTDVEMYDLETGK--WTQI 309 (437)
Q Consensus 257 W~~~~~~~~~r------~~~~~~~-------~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~~ 309 (437)
|+---.++... ....-++ .+|.+|+ |... ..++.+|+.+++ |+.-
T Consensus 79 ~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~-Gs~~-------g~l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 79 QKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYT-GSMR-------TIMYTINMLNGEIISAFG 138 (339)
T ss_dssp EEEEEEHHHHHTTCSEEEECC----------CCEEEEE-CEEE-------EEEEEEETTTCCEEEEES
T ss_pred EEeeeccccceeccccccCCCceeecccccccCCEEEE-EecC-------CEEEEEECCCCcEEEEEe
Confidence 65322222111 1111122 4555555 3433 258888888875 6543
No 353
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=25.40 E-value=5.2e+02 Score=25.80 Aligned_cols=121 Identities=7% Similarity=-0.150 Sum_probs=57.8
Q ss_pred CCEEEEEcC--ccCCceEEEEE----CCCCceecCCC----CCCCccc-----eeeEEECC-EEEEE-eccCCCCCCCce
Q 043540 184 GTELLVFGK--EVHGNAIYRYN----LLTNTWSTGMT----MNTPRCL-----FGSASLGE-IAILA-GGCDPRGKLLKS 246 (437)
Q Consensus 184 ~~~lyv~GG--~~~~~~v~~yd----~~t~~W~~~~~----~~~~r~~-----~~~~~~~~-~iyv~-GG~~~~~~~~~~ 246 (437)
++++++... ......++++| +.+++++.+.. -...... ....+-++ .++++ ...++ ...
T Consensus 263 D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g----~~~ 338 (719)
T 1z68_A 263 DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDG----YKH 338 (719)
T ss_dssp SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTS----CEE
T ss_pred CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCC----ceE
Confidence 566655521 22234689999 88877766541 1111111 11122234 45443 32222 367
Q ss_pred EEEEECCCCcEEecCCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCC--ceEecC
Q 043540 247 AELYNSITGTWMPISSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETG--KWTQIT 310 (437)
Q Consensus 247 ~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~--~W~~~~ 310 (437)
++.+|..+++.+.+..-..... .....-++.||+.+... ........++..+..++ +.+.+.
T Consensus 339 l~~~~~~~~~~~~lt~~~~~v~-~~~~~d~~~i~~~~~~~-~~~~~~~~l~~~~~~~g~~~~~~l~ 402 (719)
T 1z68_A 339 IHYIKDTVENAIQITSGKWEAI-NIFRVTQDSLFYSSNEF-EEYPGRRNIYRISIGSYPPSKKCVT 402 (719)
T ss_dssp EEEESSCSTTCEECSCSSSCEE-EEEEECSSEEEEEESCG-GGCTTCBEEEEEECSSSSCCEEESS
T ss_pred EEEEECCCCceEecccCceEEE-EEEEEeCCEEEEEEecC-CCCCceEEEEEEeCCCCCCCceecc
Confidence 8999998888766653221111 11222345666665430 00112234666776544 334443
No 354
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=25.16 E-value=3.4e+02 Score=23.66 Aligned_cols=180 Identities=11% Similarity=0.062 Sum_probs=92.6
Q ss_pred CCEEEEEcCccCCceEEEEECCCCceecCCCCCCCccceeeEEECC-EEEEEeccCCCCCCCceEEEEECCCCc--EE--
Q 043540 184 GTELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNTPRCLFGSASLGE-IAILAGGCDPRGKLLKSAELYNSITGT--WM-- 258 (437)
Q Consensus 184 ~~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~-- 258 (437)
++.||+.... ...++.+|+.-+.++.++- .......+.+..++ .++|.-.. ...+.+|+...+. |.
T Consensus 38 ~~~L~aV~d~--~~~I~~ld~~g~v~~~i~l-~g~~D~EGIa~~~~g~~~vs~E~------~~~l~~~~v~~~~~i~~~~ 108 (255)
T 3qqz_A 38 SNTLFSTINK--PAAIVEMTTNGDLIRTIPL-DFVKDLETIEYIGDNQFVISDER------DYAIYVISLTPNSEVKILK 108 (255)
T ss_dssp TTEEEEEEET--TEEEEEEETTCCEEEEEEC-SSCSSEEEEEECSTTEEEEEETT------TTEEEEEEECTTCCEEEEE
T ss_pred CCEEEEEECC--CCeEEEEeCCCCEEEEEec-CCCCChHHeEEeCCCEEEEEECC------CCcEEEEEcCCCCeeeeee
Confidence 5788887643 5679999998666666532 22233445555554 44444211 1567777655444 42
Q ss_pred ecC-CC--CcCCcCeeEEEE---CCEEEEEecccCCCCccCCeEEEEEC--CCCceEecCC--C--CCcccCCCCccccc
Q 043540 259 PIS-SM--HKARKMCSGVFM---DGKFYVIGGIGEGSSAMLTDVEMYDL--ETGKWTQITD--M--FPARIGSDGVSVIS 326 (437)
Q Consensus 259 ~~~-~~--~~~r~~~~~~~~---~g~lyv~GG~~~~~~~~~~~v~~yd~--~~~~W~~~~~--~--~~~~~~~~~~~~~~ 326 (437)
... .+ .......-+..+ +++||+.-... ...++.|+- .++.-+.+.. + ......
T Consensus 109 ~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~------p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d-------- 174 (255)
T 3qqz_A 109 KIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN------PIEVYKVNGLLSSNELHISKDKALQRQFTLDD-------- 174 (255)
T ss_dssp EEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS------SEEEEEEESTTCSSCCEEEECHHHHHTCCSSC--------
T ss_pred eeccccccccccCCcceEEEeCCCCEEEEEECcC------CceEEEEcccccCCceeeecchhhccccccCC--------
Confidence 121 11 122344555555 45899975543 235777772 2211111110 0 000111
Q ss_pred ccCCCCCEEEEE--CCEEEEEeCCCCeEEEEeCCCCcEEEccCCCCcc-----cCCCcccEEEEEeCCEEEEEc
Q 043540 327 AAGEAPPLLAVV--NNELYAADHEKEEVRKFDKGRKLWRTLGRLPEQA-----SSMNGWGLAFRACGDQLIVIG 393 (437)
Q Consensus 327 ~~~~~~~~~~~~--~~~ly~~gg~~~~v~~yd~~~~~W~~v~~lp~~~-----~~~~~~~~a~~~~~~~l~v~G 393 (437)
..+++.. .|++|++......+.++|.+.+.=... .|.... .....-|.++.. ++.|||+.
T Consensus 175 -----~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~-~L~~g~~~l~~~~~qpEGia~d~-~G~lyIvs 241 (255)
T 3qqz_A 175 -----VSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEM-SLTKGSRGLSHNIKQAEGVAMDA-SGNIYIVS 241 (255)
T ss_dssp -----CCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEE-ECSTTGGGCSSCCCSEEEEEECT-TCCEEEEE
T ss_pred -----ceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEE-EcCCccCCcccccCCCCeeEECC-CCCEEEEc
Confidence 0233332 588999998889999999886632222 232110 001123566533 56899995
No 355
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=25.16 E-value=6.9e+02 Score=27.14 Aligned_cols=150 Identities=15% Similarity=0.139 Sum_probs=73.2
Q ss_pred ceeeEEECCEEEEEeccCCCCCCCceEEEEECCCCcE-EecC----CCCcCCcCeeEEEE--C-CEEEEEecccCCCCcc
Q 043540 221 LFGSASLGEIAILAGGCDPRGKLLKSAELYNSITGTW-MPIS----SMHKARKMCSGVFM--D-GKFYVIGGIGEGSSAM 292 (437)
Q Consensus 221 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W-~~~~----~~~~~r~~~~~~~~--~-g~lyv~GG~~~~~~~~ 292 (437)
++++....+.+ ++|.-... .....++.|+.....| .... .+.....++++++- + +..+|+|--. ...
T Consensus 336 GfSa~~t~d~~-~~GapG~~-~w~G~v~~~~~~~~~~~~~~~~~~~~~~~sylGySVa~~~~~g~~~~v~GAP~---~~~ 410 (1095)
T 3k6s_A 336 GFSAVFTPDGP-VLGAVGSF-TWSGGAFLYPPNMSPTFINMSQENVDMRDSYLGYSTELALWKGVQSLVLGAPR---YQH 410 (1095)
T ss_dssp TSSEECCTTCC-EEEESCST-TTTBEEEECCSSSCCEEECCCSSCCCCCSCCBTSSEECCCCSSSCEEEEEETT---GGG
T ss_pred cccceecCCcc-eEcccccC-CccceeEEecCCCcceeeccccccccccccccceeeEEeccCCceEEEEEccc---ccc
Confidence 44445454544 67643222 2345677887765443 3221 12222234444432 2 3455665322 223
Q ss_pred CCeEEEEECCCCceEecCCCCCcccCCCCcccccccCCCCCEEEEEC------CEEEEEeCC-------CCeEEEEeCCC
Q 043540 293 LTDVEMYDLETGKWTQITDMFPARIGSDGVSVISAAGEAPPLLAVVN------NELYAADHE-------KEEVRKFDKGR 359 (437)
Q Consensus 293 ~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ly~~gg~-------~~~v~~yd~~~ 359 (437)
...++.|....+.|+....+.....+ +.++..+++.| ..|+++|.. .+.+++|....
T Consensus 411 ~G~V~i~~~~~~~~~~~~~~~g~~~g----------s~fG~sva~~DvngDG~~DllvvGAP~~~~~~~~G~Vyvy~~~~ 480 (1095)
T 3k6s_A 411 TGKAVIFTQVSRQWRMKAEVTGTQIG----------SYFGASLCSVDVDSDGSTDLVLIGAPHYYEQTRGGQVSVCPLPR 480 (1095)
T ss_dssp TCEEEEEECCTTTCCEEEEECCSSTT----------SCTTSCEEEECSSSSSSCCEEEEECSSCCSSCCCBCEEEEECCS
T ss_pred cceEEEEEecCCcceEEeecccCccc----------CcCCceEEEEEeCCCCCccEEEECCccccCcCCCCEEEEEEeCC
Confidence 45688998888889776533322211 11224455532 257777732 35789986544
Q ss_pred --CcEEEccCCCCccc-CCCcccEEEEEe
Q 043540 360 --KLWRTLGRLPEQAS-SMNGWGLAFRAC 385 (437)
Q Consensus 360 --~~W~~v~~lp~~~~-~~~~~~~a~~~~ 385 (437)
..|.....+..... ....||.+++..
T Consensus 481 ~~~~~~~~~~l~g~~~~~~~~FG~sva~~ 509 (1095)
T 3k6s_A 481 GWRRWWCDAVLYGEQGHPWGRFGAALTVL 509 (1095)
T ss_dssp STTCCCSCSSCCCCCSCSSCCBTSCEEEE
T ss_pred CCcceeeeEEeecccCCccccCccceEee
Confidence 45875444332211 122356555543
No 356
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=24.19 E-value=3e+02 Score=25.21 Aligned_cols=94 Identities=10% Similarity=0.038 Sum_probs=50.4
Q ss_pred ceEEEEECCCCcE---EecCCCCcCCcCeeEEEE----------CCEEEEEecccCCCCccCCeEEEEECCCCceE-ecC
Q 043540 245 KSAELYNSITGTW---MPISSMHKARKMCSGVFM----------DGKFYVIGGIGEGSSAMLTDVEMYDLETGKWT-QIT 310 (437)
Q Consensus 245 ~~~~~yd~~t~~W---~~~~~~~~~r~~~~~~~~----------~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~-~~~ 310 (437)
..+.++|..++.- ..+..+.........+.+ ++++.+.||.+ .++..+|+.++.=. .+.
T Consensus 111 ~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D-------~tv~~Wd~~~~~~~~~~~ 183 (393)
T 4gq1_A 111 NTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD-------CTLIIWRLTDEGPILAGY 183 (393)
T ss_dssp SCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT-------SEEEEEEEETTEEEEEEE
T ss_pred CcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC-------CeEEEEECCCCceeeeec
Confidence 4567777766643 233333322222222322 68888988876 35778887654311 110
Q ss_pred CCCCcccCCCCcccccccCCCCCEEEEE-CC-EEEEEeCCCCeEEEEeCCCCc
Q 043540 311 DMFPARIGSDGVSVISAAGEAPPLLAVV-NN-ELYAADHEKEEVRKFDKGRKL 361 (437)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~ly~~gg~~~~v~~yd~~~~~ 361 (437)
.. ... ...++.. ++ .+++.|+..+.|.+||..+.+
T Consensus 184 ~~---~~~-------------v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~ 220 (393)
T 4gq1_A 184 PL---SSP-------------GISVQFRPSNPNQLIVGERNGNIRIFDWTLNL 220 (393)
T ss_dssp EC---SSC-------------EEEEEEETTEEEEEEEEETTSEEEEEETTCCC
T ss_pred CC---CCC-------------cEEEEECCCCCceEEecCCCCEEEEEECCCCc
Confidence 10 000 0122333 34 466777777889999988764
No 357
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=23.74 E-value=6e+02 Score=25.97 Aligned_cols=149 Identities=9% Similarity=-0.016 Sum_probs=78.5
Q ss_pred CceEEEEECCC--CceecCCCCCCCccceeeEEECCEEEEEeccC--C--CCCCCceEEEEECCC--------CcEEe-c
Q 043540 196 GNAIYRYNLLT--NTWSTGMTMNTPRCLFGSASLGEIAILAGGCD--P--RGKLLKSAELYNSIT--------GTWMP-I 260 (437)
Q Consensus 196 ~~~v~~yd~~t--~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~--~--~~~~~~~~~~yd~~t--------~~W~~-~ 260 (437)
.+.++..+... ..|.++ ..|+...-....++++|+....+ . .......+...|..+ ..|+. +
T Consensus 268 ~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 344 (711)
T 4hvt_A 268 NYDNYILDTKYKNLKLQKI---NMPSDATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILF 344 (711)
T ss_dssp CEEEEEEECSSSSCEEEEC---CSCTTCEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEE
T ss_pred ceeEEEEcCCCCCCcceEe---ecCCcceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEE
Confidence 35667666542 566666 33333222456789999975432 1 011235677888654 36886 3
Q ss_pred CCCCcCCcCeeEEEECCEEEEEecccCCCCccCCeEEEEECCCCceEecC--CCCCcccCCCCcccccccCCCCCEEEE-
Q 043540 261 SSMHKARKMCSGVFMDGKFYVIGGIGEGSSAMLTDVEMYDLETGKWTQIT--DMFPARIGSDGVSVISAAGEAPPLLAV- 337 (437)
Q Consensus 261 ~~~~~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~- 337 (437)
++-. .+........++.|++..-.+ ....+..+|+.++.|.... .+|.. +. .....
T Consensus 345 ~~~~-~~~l~~~~~~~~~l~~~~~~~-----~~~~l~~~~~~~g~~~~~~~i~lp~~--~~-------------~~~~~~ 403 (711)
T 4hvt_A 345 TPTA-NEVFNFISTTKDRVFLATYDN-----VVAKVVTFTLENEQWTKPVVLKLPYQ--NA-------------IFGMSS 403 (711)
T ss_dssp CCCT-TEEEEEEEECSSCEEEEEEET-----TEEEEEEECEETTEECCCEEECCCST--TC-------------EEEEEC
T ss_pred CCCC-CCeEEEEEEECCEEEEEEEEC-----CEEEEEEEECCCCceEEEeccCCCCC--eE-------------EEEEee
Confidence 3222 222333445567777764322 2335888998888884322 23321 10 01111
Q ss_pred -E-CCEEEEEe-C--CCCeEEEEeCCCCcEEEccCCC
Q 043540 338 -V-NNELYAAD-H--EKEEVRKFDKGRKLWRTLGRLP 369 (437)
Q Consensus 338 -~-~~~ly~~g-g--~~~~v~~yd~~~~~W~~v~~lp 369 (437)
. ++.+++.. . ....++.||.. ++++.+...+
T Consensus 404 ~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~~~l~~~~ 439 (711)
T 4hvt_A 404 YEEEEEALITIENSIVPPTIYLWVKT-HELKIIRKAL 439 (711)
T ss_dssp CTTCSCEEEEEECSSSCCEEEEECTT-SCEEEEECCS
T ss_pred cCcCCEEEEEEecCCCCCEEEEEeCC-CcEEEEecCC
Confidence 1 23444432 2 35689999988 7777765443
No 358
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=21.38 E-value=4.8e+02 Score=23.94 Aligned_cols=153 Identities=14% Similarity=0.088 Sum_probs=81.3
Q ss_pred CEEEEEcCccCCceEEEEECCCCceecCCCCCC------Cccc-eeeEEE----CCEEEEEecc----CCCC---CCCce
Q 043540 185 TELLVFGKEVHGNAIYRYNLLTNTWSTGMTMNT------PRCL-FGSASL----GEIAILAGGC----DPRG---KLLKS 246 (437)
Q Consensus 185 ~~lyv~GG~~~~~~v~~yd~~t~~W~~~~~~~~------~r~~-~~~~~~----~~~iyv~GG~----~~~~---~~~~~ 246 (437)
+.+|+- ......|.++|+..+.-.++ ..+. +... .+..+. .+.|+++.-. +..+ .-...
T Consensus 25 g~~~vs--~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~ 101 (334)
T 2p9w_A 25 QVFYQS--NLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASS 101 (334)
T ss_dssp TEEEEE--ETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCE
T ss_pred CEEEEE--eccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCE
Confidence 555553 22345788899986654433 2221 1222 344442 4688886321 1111 12477
Q ss_pred EEEEECC---CCc--EEec-CCCCc------C-Cc-CeeEEEE--CCEEEEEecccCCCCccCCeEEEEECCCCc---eE
Q 043540 247 AELYNSI---TGT--WMPI-SSMHK------A-RK-MCSGVFM--DGKFYVIGGIGEGSSAMLTDVEMYDLETGK---WT 307 (437)
Q Consensus 247 ~~~yd~~---t~~--W~~~-~~~~~------~-r~-~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~---W~ 307 (437)
+.+||+. +++ |..- +.... . +. .+--+.+ +|.+||.+... +..|+++|+.... |-
T Consensus 102 v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~------~~~I~rV~pdG~~~~~~~ 175 (334)
T 2p9w_A 102 FHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALG------MPAIARVSADGKTVSTFA 175 (334)
T ss_dssp EEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEES------SCEEEEECTTSCCEEEEE
T ss_pred EEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCC------CCeEEEEeCCCCEEeeee
Confidence 9999988 543 5431 11111 1 21 2223344 69999986553 1458899987553 43
Q ss_pred ecCCCCCcccCCCCcccccccCCCCCEEEEE--CCEEEEEeCCCCeEEEEeCCCC
Q 043540 308 QITDMFPARIGSDGVSVISAAGEAPPLLAVV--NNELYAADHEKEEVRKFDKGRK 360 (437)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ly~~gg~~~~v~~yd~~~~ 360 (437)
.-.+....+.+ ..+++.. ++.|++... ...++++|..+.
T Consensus 176 ~~~~~~~~~~G-------------~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~p 216 (334)
T 2p9w_A 176 WESGNGGQRPG-------------YSGITFDPHSNKLIAFGG-PRALTAFDVSKP 216 (334)
T ss_dssp ECCCCSSSCCS-------------CSEEEEETTTTEEEEESS-SSSEEEEECSSS
T ss_pred ecCCCcccccC-------------cceEEEeCCCCEEEEEcC-CCeEEEEcCCCC
Confidence 22222222333 1457777 445666666 888999998853
No 359
>2l9b_B MRNA 3'-END-processing protein RNA14; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=21.07 E-value=59 Score=20.81 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=16.5
Q ss_pred CCCHHHHHHHhhccCccchhhH
Q 043540 91 ELGRDITINCLLRCSRSDYGAI 112 (437)
Q Consensus 91 ~LP~dl~~~~L~rlP~~~~~~~ 112 (437)
.+|+|++ +.|.-||.+.|+..
T Consensus 6 ~iP~eI~-dLL~vLPKRQYFK~ 26 (53)
T 2l9b_B 6 ELPTEVL-DLLSVIPKRQYFNT 26 (53)
T ss_dssp CCCHHHH-HHHHHSBCGGGGCS
T ss_pred CCCHHHH-HHHHHcchHhhhcc
Confidence 4889976 78888999887663
Done!