Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>043541
IPVRGTLLPGICSSRLVLSKYIPQTYCKLDSHTRNVTLSSLRELGLFKCAANDEAIRDIV
AGCPLIECLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARVSICGPNVRLVDISSLHAP
CGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEIFRCMKIRKLLVRSCNTLDE
FKLDTPNLSVFDYEGDMVSFSSNALALSETSLFLTSLFLFAPLKNFLKAAIIPRELREIL
SPPLTYENHVCLAVDSEYNTFSFAKLVDSLLWISPHAETLSIKYNDCDHEFSFQTIESLP
Y

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  043541
        (301 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2099644 - symbol:AT3G03360 species:3702 "Arabi...   147  1.3e-07   1
TAIR|locus:2143463 - symbol:AT5G03100 "AT5G03100" species...   115  0.00027   1


>TAIR|locus:2099644 [details] [associations]
            symbol:AT3G03360 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR001810 Pfam:PF00646
            PROSITE:PS50181 SMART:SM00256 EMBL:CP002686
            GenomeReviews:BA000014_GR SUPFAM:SSF81383 EMBL:AC009895
            HOGENOM:HOG000097837 EMBL:BT004131 EMBL:AK318807 EMBL:AK229563
            EMBL:AK229911 IPI:IPI00527984 IPI:IPI00845135 IPI:IPI00944252
            RefSeq:NP_186986.1 UniGene:At.48615 UniGene:At.74916
            ProteinModelPortal:Q84W80 SMR:Q84W80 PRIDE:Q84W80
            EnsemblPlants:AT3G03360.1 GeneID:821272 KEGG:ath:AT3G03360
            TAIR:At3g03360 eggNOG:NOG316608 InParanoid:Q84W80 OMA:ADIDSWI
            PhylomeDB:Q84W80 ProtClustDB:CLSN2913395 Genevestigator:Q84W80
            Uniprot:Q84W80
        Length = 481

 Score = 147 (56.8 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 40/163 (24%), Positives = 77/163 (47%)

Query:    16 LVLSKYIPQTY----CKLDSHTRN----VTLSSLRELGLFKCAANDEAIRDIVAGCPLIE 67
             L ++  + Q Y    CK D  + N    V+ +SL+ L L+ C  +DE+I  I++GCP++E
Sbjct:   156 LYINSSLKQLYLDFGCKKDFISLNPKCSVSWTSLKNLSLYHCNISDESIAIILSGCPILE 215

Query:    68 CLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARVSICGPNVRLVDISSLHAPCGINVAL 127
              L +  C+ LK L+     +L    +    R+    +  P++R + + +   PC +    
Sbjct:   216 SLLLFFCKKLKVLDLSKSPRLITLEITRRCRMEPTQLVAPHIRCLRLINSEKPCALVDVS 275

Query:   128 CKNLKEFKLFKISITNEWLCNQFSELPFLEYVEIFRCMKIRKL 170
               +  E  +   +I +  L   F +   ++ +E  +C  + KL
Sbjct:   276 SLSQAELDITAYAIVDNKLEADFHQTMVVKMLE--KCQNVEKL 316


>TAIR|locus:2143463 [details] [associations]
            symbol:AT5G03100 "AT5G03100" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR001810 Pfam:PF00646 PROSITE:PS50181
            EMBL:CP002688 GenomeReviews:BA000015_GR SUPFAM:SSF81383
            EMBL:AB005240 EMBL:AL163002 EMBL:BT022002 EMBL:BT026075
            IPI:IPI00541785 PIR:T48331 RefSeq:NP_195930.2 UniGene:At.50422
            ProteinModelPortal:Q501G5 SMR:Q501G5 PRIDE:Q501G5
            EnsemblPlants:AT5G03100.1 GeneID:831808 KEGG:ath:AT5G03100
            TAIR:At5g03100 eggNOG:NOG286443 HOGENOM:HOG000097837
            InParanoid:Q501G5 OMA:EIDTWIN PhylomeDB:Q501G5
            ProtClustDB:CLSN2918611 Genevestigator:Q501G5 Uniprot:Q501G5
        Length = 307

 Score = 115 (45.5 bits), Expect = 0.00027, P = 0.00027
 Identities = 39/149 (26%), Positives = 69/149 (46%)

Query:    26 YCKLDSHTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLEFLNL 85
             YC L+     V+ SSLR L L +C  +D++I  I+ GC L+E L +  C  L  L+    
Sbjct:   135 YCILNPKCV-VSWSSLRNLSLNRCKVSDDSIAKILTGCSLLESLTLNLCDRLNDLDLSKS 193

Query:    86 GKLSKFMVRNEDRLARVSICGPNVRLVDISSLHAPCGINVALCKNLKEFKL-FKISITNE 144
               L +  +   DR     I  P++R + + +   P  + V +  +L E  L     + + 
Sbjct:   194 LSLRRLEILG-DRWTPERIVAPHIRYLRLENYQRPSTL-VDV-SSLTEANLGLSKHVLDY 250

Query:   145 WLCNQFSE-LPFLEYVEIFRCMKIRKLLV 172
             + C   +E L ++    + +   I+KL +
Sbjct:   251 FTCEMETESLQYMVRQTVVKLQNIKKLTI 279


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.140   0.426    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      301       281   0.00083  115 3  11 22  0.44    33
                                                     33  0.42    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  212 KB (2117 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.53u 0.13s 21.66t   Elapsed:  00:00:01
  Total cpu time:  21.53u 0.13s 21.66t   Elapsed:  00:00:01
  Start:  Fri May 10 07:28:11 2013   End:  Fri May 10 07:28:12 2013

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