BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043541
(301 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q84W80|FBL42_ARATH F-box/LRR-repeat protein At3g03360 OS=Arabidopsis thaliana
GN=At3g03360 PE=2 SV=2
Length = 481
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 35 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLEFLNLGKLSKFMVR 94
+V+ +SL+ L L+ C +DE+I I++GCP++E L + C+ LK L+ +L +
Sbjct: 183 SVSWTSLKNLSLYHCNISDESIAIILSGCPILESLLLFFCKKLKVLDLSKSPRLITLEIT 242
Query: 95 NEDRLARVSICGPNVRLVDISSLHAPCGINVALCKNLKEFKLFKISITNEWLCNQFSELP 154
R+ + P++R + + + PC + + E + +I + L F +
Sbjct: 243 RRCRMEPTQLVAPHIRCLRLINSEKPCALVDVSSLSQAELDITAYAIVDNKLEADFHQTM 302
Query: 155 FLEYVEIFRCMKIRKL 170
++ +E +C + KL
Sbjct: 303 VVKMLE--KCQNVEKL 316
>sp|Q9LZ15|FBL78_ARATH Putative F-box/LRR-repeat protein At5g02700 OS=Arabidopsis thaliana
GN=At5g02700 PE=4 SV=1
Length = 456
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 35 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLEFLNLGKLSKFMVR 94
V+ SLR L L C DE+I +I++GCP++E L + CR L+ L+ L + +
Sbjct: 164 TVSWKSLRNLTLRFCQIPDESIHNILSGCPILESLTLDTCRLLERLDLSKSPNLRRLDIN 223
Query: 95 NE-DRLARVSICGPNVRLVDISSLHAPCGI 123
+ R V+I P++ + ++ P I
Sbjct: 224 QQYRRTGPVAIVAPHIYYLRLTYSSTPSTI 253
>sp|Q9LSJ3|FBL48_ARATH Putative F-box/LRR-repeat protein At3g28410 OS=Arabidopsis thaliana
GN=At3g28410 PE=4 SV=2
Length = 465
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 36 VTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLEFLNLGKLSKFMV-R 94
V+ SLR L L C DE++ +I++GCP++E L + CR L+ L+ L + + R
Sbjct: 166 VSWKSLRNLTLRFCQIPDESMHNILSGCPILESLTLDTCRLLERLDLSKSPNLRRLDINR 225
Query: 95 NEDRLARVSICGPNVRLVDISSLHAPCGI 123
R ++I P++ + ++ P I
Sbjct: 226 QYRRTGPIAIVAPHIYYLRLTYSSTPSTI 254
>sp|Q1PE04|FBL25_ARATH F-box/LRR-repeat protein 25 OS=Arabidopsis thaliana GN=FBL25 PE=2
SV=1
Length = 258
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 36 VTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLEFLNLGKLSKFMVRN 95
V+ +SLR+L L +C +D++ I++GCP++E L + C LK L+ +L++ +
Sbjct: 165 VSWTSLRDLSLTRCNLSDKSFLKILSGCPILESLSLKFCESLKYLDLSKSLRLTRLEIER 224
Query: 96 ----EDRLARVSICGPNVRLVDISSLHAPC 121
+ + + I P++ + + A C
Sbjct: 225 RSCFREPMQSMQIVAPHIHYLRLRDSEAHC 254
>sp|Q501G5|FB250_ARATH F-box protein At5g03100 OS=Arabidopsis thaliana GN=At5g03100 PE=2
SV=1
Length = 307
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 16/111 (14%)
Query: 36 VTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLEFLNLGKLSKFMVRN 95
V+ SSLR L L +C +D++I I+ GC L+E L + C L L+ L + +
Sbjct: 144 VSWSSLRNLSLNRCKVSDDSIAKILTGCSLLESLTLNLCDRLNDLDLSKSLSLRRLEILG 203
Query: 96 EDRLARVSICGPNVR------------LVDISSLHAPCGINVALCKNLKEF 134
DR I P++R LVD+SSL N+ L K++ ++
Sbjct: 204 -DRWTPERIVAPHIRYLRLENYQRPSTLVDVSSLTEA---NLGLSKHVLDY 250
>sp|O80741|FB351_ARATH Probable F-box protein At1g60180 OS=Arabidopsis thaliana
GN=At1g60180 PE=4 SV=1
Length = 322
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 10/122 (8%)
Query: 3 VRGTLLPGICSSRLVLSKYIPQTYCKLDSHTRNVTLSSLRELGLFKCAANDEAIRDIVAG 62
+ T +P + +S L IP+ +V+ +SL++L L C +DE I I++G
Sbjct: 9 ISSTSIPLLSNSAFELFNMIPRC---------SVSWTSLKKLSLRFCELSDECIAKILSG 59
Query: 63 CPLIECLKIIDCRGLKSLEFLNLGKLSKFMVR-NEDRLARVSICGPNVRLVDISSLHAPC 121
CP++E L + C L L+ +L + N D I P++ + + + +PC
Sbjct: 60 CPILESLTLSHCIYLTVLDLSKSLRLRTLEIACNIDNTRPRQIVAPHIHRLRLKTYQSPC 119
Query: 122 GI 123
+
Sbjct: 120 AL 121
>sp|Q9LYZ2|FBL80_ARATH Putative F-box/LRR-repeat protein At5g02930 OS=Arabidopsis thaliana
GN=At5g02930 PE=4 SV=1
Length = 469
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 36 VTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLEFLNLGK 87
V+ +SL+ L L C +DE+ +I++GCP++E L + C LK +LNL K
Sbjct: 166 VSWTSLKNLSLTDCTMSDESFLEILSGCPILESLSLKFCMSLK---YLNLSK 214
>sp|Q9LV26|FBL45_ARATH Putative F-box/LRR-repeat protein At3g18150 OS=Arabidopsis thaliana
GN=At3g18150 PE=4 SV=2
Length = 456
Score = 38.9 bits (89), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
Query: 41 LRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLEFLNLGKLSKFMVRNE---D 97
L++L L C +DE++ +I+ GCP++E L + C GL+ L+ +L +
Sbjct: 170 LKKLYLSTCLLSDESMANILFGCPILESLTLDHCGGLRVLDLSKSLRLRTLEINCNIWVP 229
Query: 98 RLARVSICGPNVRLVDISSLHAPCGINVALCKNLKEFKL 136
L + I P+ + + + PC + +LKE KL
Sbjct: 230 ELTAMQIVAPHTHCLRLRNSKLPCSL--VDVSSLKEAKL 266
>sp|Q9S9V9|FBL23_ARATH Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana
GN=FBL23 PE=4 SV=1
Length = 449
Score = 37.0 bits (84), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 130 NLKEFKLFK-ISITNEWLCNQFSELPFLEYVEIFRCM---KIRKLLVRSCNTLDEFKLDT 185
NLK L + IT+E + S++P LEY+E+ C+ + + + RSC L KL+
Sbjct: 278 NLKSLGLVRCFPITDEGVAKAVSKVPLLEYLEVSYCLFSGESLRDIGRSCPNLKTLKLNR 337
Query: 186 PNLSVFDYEGDMVSFSSNALALSETSLFLTSLFLFA 221
+F G F NA A++E+ L L L
Sbjct: 338 APEIMFSNSG----FDDNAKAIAESMPELRHLQLLG 369
>sp|Q9UTR1|MMS19_SCHPO DNA repair/transcription protein mms19 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mms19 PE=3 SV=1
Length = 1018
Score = 35.4 bits (80), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 141 ITNEWLCNQFSELPFLEYVEIFRCMKIRKLLVRSCNTLDEFKLDTPNLSVFDYEGDMVSF 200
+ NE L Q L FLEYV ++C+ + RS N D +D P L D + VS
Sbjct: 393 MVNEPLEKQKGMLVFLEYV--YKCLVLLYGKWRSKNQAD---IDNPLLVYKDKQLSFVSG 447
Query: 201 SSNALALSETS---LFLTSLFLFAPLKNFL 227
S A ET L L +FL A +KNFL
Sbjct: 448 SLMGTAKDETEIRMLALKVIFLMASIKNFL 477
>sp|Q9FX89|FB50_ARATH Putative F-box protein At1g49610 OS=Arabidopsis thaliana
GN=At1g49610 PE=4 SV=2
Length = 385
Score = 34.7 bits (78), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Query: 35 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE 81
+V+ SSL +L LF +DE+I I++GCP+IE L + C L L+
Sbjct: 162 SVSWSSLTKLSLF----SDESIAKILSGCPIIESLTLHFCDQLMVLD 204
>sp|Q8W3K0|DRL9_ARATH Probable disease resistance protein At1g58602 OS=Arabidopsis
thaliana GN=At1g58602 PE=2 SV=1
Length = 1138
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 27/125 (21%)
Query: 61 AGCPLIECLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARVSI--CG-----PNV-RLV 112
+ PL+ L I DCR LK L +L L +S+ CG P + RLV
Sbjct: 845 SSMPLLLTLNIFDCRKLKQLPDEHL----------PSHLTAISLKKCGLEDPIPTLERLV 894
Query: 113 DIS--SLHAPCGINVALCKN-----LKEFKLFKISITNEWLCNQFSELPFLEYVEIFRCM 165
+ SL CG + +C L + L ++ EW+ S +P L +EI RC+
Sbjct: 895 HLKELSLSELCG-RIMVCTGGGFPQLHKLDLSELDGLEEWIVEDGS-MPRLHTLEIRRCL 952
Query: 166 KIRKL 170
K++KL
Sbjct: 953 KLKKL 957
>sp|Q9C5D2|FBL4_ARATH F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana GN=FBL4 PE=2
SV=1
Length = 610
Score = 32.0 bits (71), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 41 LRELGLFKCAA-NDEAIRDIVAGCPLIECLKIIDCRGLKSLEFLNLGK----LSKFMVR 94
L+EL L C + A+++I GC +E L ++DC G+ + ++ K L K +R
Sbjct: 374 LKELALLYCQRIGNSALQEIGKGCKSLEILHLVDCSGIGDIAMCSIAKGCRNLKKLHIR 432
>sp|Q29G54|WSCD_DROPS WSCD family member GA21586 OS=Drosophila pseudoobscura
pseudoobscura GN=GA21586 PE=3 SV=2
Length = 316
Score = 32.0 bits (71), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 149 QFSELPFLEYVEIFRCMKIRKLLVRSCNTLDEFKLDTPNLSVFDYEGDMVSFSSNALALS 208
+F+E P M RK+ +R C L D PN + DY D + S+ A
Sbjct: 42 RFAEFPSFHSPRF--PMPSRKMTIRWCRDLKYMNRDLPNYT--DYRADFYTLPSDVSASL 97
Query: 209 ETSLFLTSLFLF 220
+ S LT+L F
Sbjct: 98 QASPMLTALASF 109
>sp|Q8LF09|FDL23_ARATH F-box/FBD/LRR-repeat protein At4g00160 OS=Arabidopsis thaliana
GN=At4g00160 PE=2 SV=2
Length = 453
Score = 32.0 bits (71), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 78/168 (46%), Gaps = 37/168 (22%)
Query: 36 VTLSSLRELGLFKCAANDEA-IRDIVAGCPLIECLKIIDCRGLKS-LEFLNLGKLS--KF 91
V + SLR L L + DE+ IR++++GCP++E L +I RG S +E + ++ K
Sbjct: 163 VVMKSLRTLHLELVSYKDESSIRNLLSGCPILEELLVI--RGEDSDIEVFTIDEVPSLKR 220
Query: 92 MVRNEDRLAR----VSICGPNVRLVDISSLHAPCGINVALCKN---LKEFKLFK-ISITN 143
+ N+D + I P+++ + I L P C N L E +F SITN
Sbjct: 221 LTINDDHDGQEFWGYVINAPSLKYLLIEDLRCP-----GFCLNAPELMEANIFDGTSITN 275
Query: 144 EWLCNQFSELPFLEYVEIFRCMKIRKLLVRSCNTLDEFKLDTPNLSVF 191
+ FL Y+ +++LL+ L +K+ P S+F
Sbjct: 276 D---------NFLGYL-----TSVKRLLL----NLSPWKITYPTGSIF 305
>sp|Q16RY9|DAAF1_AEDAE Dynein assembly factor 1, axonemal homolog OS=Aedes aegypti
GN=AAEL010772 PE=3 SV=1
Length = 1107
Score = 31.6 bits (70), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 145 WL-CNQFSELPFLEYVEIFRCMKIRKLLVRSCNTLDEFK-LDTPNLS 189
WL CN SE+ LEY +C+ ++ L+ LD K LDT NLS
Sbjct: 62 WLECNAISEIKGLEYQTELKCLYLQNNLITKIENLDSCKQLDTLNLS 108
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.140 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,589,471
Number of Sequences: 539616
Number of extensions: 3877795
Number of successful extensions: 10315
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 10282
Number of HSP's gapped (non-prelim): 57
length of query: 301
length of database: 191,569,459
effective HSP length: 117
effective length of query: 184
effective length of database: 128,434,387
effective search space: 23631927208
effective search space used: 23631927208
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)