Query 043541
Match_columns 301
No_of_seqs 227 out of 757
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 06:02:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043541.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043541hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 98.6 1.8E-09 3.8E-14 103.3 -4.3 35 41-75 140-175 (483)
2 KOG4341 F-box protein containi 98.5 1.4E-08 3.1E-13 97.1 -0.3 176 20-195 219-435 (483)
3 PLN03210 Resistant to P. syrin 98.1 1.4E-05 3.1E-10 87.4 9.5 93 22-116 616-713 (1153)
4 KOG2120 SCF ubiquitin ligase, 98.1 5.3E-07 1.1E-11 83.6 -1.4 128 37-166 208-350 (419)
5 KOG1947 Leucine rich repeat pr 98.0 4.3E-07 9.2E-12 88.4 -2.2 147 36-182 240-418 (482)
6 KOG1947 Leucine rich repeat pr 98.0 1.8E-06 4E-11 83.9 1.0 125 37-161 186-328 (482)
7 PLN00113 leucine-rich repeat r 97.9 2.9E-05 6.3E-10 83.1 7.5 125 36-161 90-219 (968)
8 PF14580 LRR_9: Leucine-rich r 97.8 1.4E-05 3E-10 69.4 3.5 123 35-161 15-147 (175)
9 PLN00113 leucine-rich repeat r 97.8 6.3E-05 1.4E-09 80.5 8.0 122 38-161 139-267 (968)
10 PLN03210 Resistant to P. syrin 97.6 0.0001 2.2E-09 80.9 6.8 143 37-182 745-910 (1153)
11 cd00116 LRR_RI Leucine-rich re 97.5 2.3E-05 5.1E-10 72.4 0.1 125 36-161 78-228 (319)
12 cd00116 LRR_RI Leucine-rich re 97.2 0.00028 6.1E-09 65.1 3.6 141 20-161 26-200 (319)
13 KOG2120 SCF ubiquitin ligase, 97.2 6.2E-05 1.4E-09 70.1 -1.0 157 40-197 186-374 (419)
14 KOG3207 Beta-tubulin folding c 97.2 4.7E-05 1E-09 73.8 -2.0 125 37-161 144-278 (505)
15 KOG3665 ZYG-1-like serine/thre 97.0 0.00038 8.1E-09 72.4 2.9 124 36-161 145-282 (699)
16 KOG1909 Ran GTPase-activating 96.6 0.00031 6.7E-09 66.5 -1.3 37 125-161 181-220 (382)
17 PF07723 LRR_2: Leucine Rich R 96.4 0.0026 5.7E-08 37.6 2.3 25 40-64 1-26 (26)
18 PF13855 LRR_8: Leucine rich r 96.0 0.012 2.5E-07 41.4 4.2 16 125-140 45-60 (61)
19 KOG3207 Beta-tubulin folding c 95.8 0.0013 2.9E-08 63.9 -1.8 109 35-161 117-229 (505)
20 KOG4194 Membrane glycoprotein 95.3 0.0036 7.8E-08 63.2 -0.7 96 62-161 267-372 (873)
21 PF13855 LRR_8: Leucine rich r 95.2 0.0079 1.7E-07 42.3 1.0 56 39-96 1-59 (61)
22 KOG3665 ZYG-1-like serine/thre 95.2 0.0054 1.2E-07 63.9 0.1 76 85-161 147-227 (699)
23 KOG4194 Membrane glycoprotein 95.2 0.0028 6E-08 64.0 -2.1 51 107-161 365-423 (873)
24 PF14580 LRR_9: Leucine-rich r 94.6 0.013 2.8E-07 50.8 0.9 77 62-161 17-95 (175)
25 smart00367 LRR_CC Leucine-rich 94.1 0.049 1.1E-06 31.8 2.3 24 38-61 1-25 (26)
26 PRK15387 E3 ubiquitin-protein 92.8 0.45 9.7E-06 50.5 8.5 11 107-117 302-312 (788)
27 COG5238 RNA1 Ran GTPase-activa 92.7 0.06 1.3E-06 50.0 1.7 103 59-161 87-221 (388)
28 smart00367 LRR_CC Leucine-rich 92.4 0.13 2.8E-06 30.0 2.3 23 128-150 1-24 (26)
29 KOG3864 Uncharacterized conser 92.0 0.048 1E-06 48.4 0.2 53 48-102 110-167 (221)
30 PF07723 LRR_2: Leucine Rich R 91.9 0.12 2.6E-06 30.5 1.7 25 130-154 1-26 (26)
31 PF12799 LRR_4: Leucine Rich r 91.6 0.15 3.3E-06 33.8 2.2 34 39-74 1-34 (44)
32 PF13516 LRR_6: Leucine Rich r 91.2 0.17 3.8E-06 28.7 2.0 23 38-60 1-23 (24)
33 KOG2123 Uncharacterized conser 91.2 0.011 2.3E-07 55.1 -5.0 108 37-150 17-136 (388)
34 PF12799 LRR_4: Leucine Rich r 90.8 0.32 7E-06 32.2 3.2 18 125-142 20-37 (44)
35 PRK15386 type III secretion pr 89.9 0.61 1.3E-05 45.9 5.6 111 19-140 54-167 (426)
36 PRK15370 E3 ubiquitin-protein 89.4 0.48 1E-05 50.1 4.8 33 38-74 219-251 (754)
37 KOG3864 Uncharacterized conser 89.2 0.09 2E-06 46.7 -0.6 59 36-94 122-184 (221)
38 KOG2739 Leucine-rich acidic nu 89.1 0.11 2.5E-06 47.5 -0.1 102 41-142 20-129 (260)
39 KOG2739 Leucine-rich acidic nu 89.0 0.16 3.6E-06 46.5 0.9 85 12-97 38-127 (260)
40 PRK15387 E3 ubiquitin-protein 88.8 0.53 1.1E-05 49.9 4.6 69 87-161 383-452 (788)
41 KOG1644 U2-associated snRNP A' 88.5 0.62 1.3E-05 41.6 4.1 116 42-161 22-147 (233)
42 PRK15370 E3 ubiquitin-protein 88.0 1.4 3.1E-05 46.6 7.1 54 86-142 325-380 (754)
43 KOG1259 Nischarin, modulator o 87.0 0.16 3.5E-06 47.9 -0.5 120 37-161 282-406 (490)
44 PF13516 LRR_6: Leucine Rich r 86.9 0.58 1.3E-05 26.5 2.0 22 128-149 1-22 (24)
45 PRK15386 type III secretion pr 86.2 0.66 1.4E-05 45.6 3.3 58 38-100 51-108 (426)
46 KOG0618 Serine/threonine phosp 85.1 0.37 8.1E-06 51.3 1.0 34 36-73 380-416 (1081)
47 KOG0444 Cytoskeletal regulator 83.7 0.03 6.6E-07 57.3 -7.3 40 12-51 137-185 (1255)
48 KOG2982 Uncharacterized conser 80.6 0.92 2E-05 42.9 1.7 37 37-73 69-106 (418)
49 KOG1909 Ran GTPase-activating 79.7 0.52 1.1E-05 45.1 -0.3 36 38-73 156-194 (382)
50 KOG0618 Serine/threonine phosp 79.7 0.14 2.9E-06 54.5 -4.5 123 34-161 354-483 (1081)
51 PF13306 LRR_5: Leucine rich r 78.8 1.6 3.5E-05 34.4 2.4 11 62-72 10-20 (129)
52 PLN03150 hypothetical protein; 77.8 2.6 5.6E-05 43.6 4.1 55 106-161 441-497 (623)
53 PLN03150 hypothetical protein; 76.3 2.4 5.1E-05 43.9 3.3 59 37-96 440-500 (623)
54 KOG4658 Apoptotic ATPase [Sign 75.4 2 4.4E-05 46.3 2.6 106 34-140 540-653 (889)
55 KOG2123 Uncharacterized conser 74.3 0.37 8E-06 45.1 -2.8 74 87-161 20-95 (388)
56 smart00368 LRR_RI Leucine rich 73.5 4.2 9.1E-05 24.0 2.6 23 39-61 2-24 (28)
57 KOG1259 Nischarin, modulator o 72.5 4.7 0.0001 38.3 3.9 106 54-161 172-314 (490)
58 KOG1859 Leucine-rich repeat pr 71.2 0.43 9.4E-06 49.9 -3.4 100 38-141 163-266 (1096)
59 PF13504 LRR_7: Leucine rich r 65.7 4.5 9.7E-05 21.1 1.4 12 40-51 2-13 (17)
60 KOG0617 Ras suppressor protein 65.0 1.1 2.4E-05 39.2 -1.7 56 34-94 28-87 (264)
61 PF08387 FBD: FBD; InterPro: 64.7 13 0.00029 25.1 4.0 36 246-283 15-50 (51)
62 KOG0531 Protein phosphatase 1, 63.3 2.8 6.1E-05 40.8 0.6 119 38-161 71-193 (414)
63 KOG1644 U2-associated snRNP A' 62.6 8.3 0.00018 34.6 3.3 79 36-118 61-151 (233)
64 KOG2982 Uncharacterized conser 59.7 6 0.00013 37.6 2.0 147 14-161 94-256 (418)
65 COG4886 Leucine-rich repeat (L 57.0 2.5 5.4E-05 40.4 -1.0 78 38-118 115-197 (394)
66 KOG0444 Cytoskeletal regulator 56.9 3.2 7E-05 43.1 -0.3 101 36-140 29-137 (1255)
67 COG4886 Leucine-rich repeat (L 56.5 6.9 0.00015 37.4 1.9 116 40-161 141-262 (394)
68 smart00579 FBD domain in FBox 37.2 66 0.0014 22.9 4.1 39 246-286 6-44 (72)
69 KOG0472 Leucine-rich repeat pr 35.5 1.4 3E-05 43.3 -6.4 104 36-142 180-288 (565)
70 KOG4658 Apoptotic ATPase [Sign 34.2 15 0.00032 39.8 0.3 66 36-102 714-786 (889)
71 KOG1665 AFH1-interacting prote 33.9 35 0.00076 31.0 2.6 54 20-75 154-207 (302)
72 KOG1859 Leucine-rich repeat pr 30.8 17 0.00037 38.6 0.1 98 38-140 186-290 (1096)
73 PF00560 LRR_1: Leucine Rich R 29.4 33 0.00071 18.8 1.1 13 130-142 1-13 (22)
74 KOG0617 Ras suppressor protein 26.1 11 0.00024 33.2 -1.9 36 124-161 74-109 (264)
75 smart00370 LRR Leucine-rich re 21.2 69 0.0015 17.9 1.5 14 39-52 2-15 (26)
76 smart00369 LRR_TYP Leucine-ric 21.2 69 0.0015 17.9 1.5 14 39-52 2-15 (26)
77 KOG0531 Protein phosphatase 1, 20.8 30 0.00064 33.7 -0.3 100 37-140 93-197 (414)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.60 E-value=1.8e-09 Score=103.27 Aligned_cols=35 Identities=40% Similarity=0.824 Sum_probs=19.6
Q ss_pred CcEEEeccccc-ChHHHHHHHhcCCcccEEeeecCC
Q 043541 41 LRELGLFKCAA-NDEAIRDIVAGCPLIECLKIIDCR 75 (301)
Q Consensus 41 Lk~L~L~~c~i-~d~~L~~Lis~Cp~LE~L~L~~C~ 75 (301)
||.|+|+||.- .|+.+..++++||+||+|.+.+|.
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~ 175 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK 175 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcce
Confidence 55555555543 345555555555555555555555
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.53 E-value=1.4e-08 Score=97.12 Aligned_cols=176 Identities=19% Similarity=0.232 Sum_probs=103.9
Q ss_pred ceecccCccccCC----CCCCCCCCCcEEEeccccc-ChHHHHHHHhcCCcccEEeeecCCCceEEE----cCCCCCccE
Q 043541 20 KYIPQTYCKLDSH----TRNVTLSSLRELGLFKCAA-NDEAIRDIVAGCPLIECLKIIDCRGLKSLE----FLNLGKLSK 90 (301)
Q Consensus 20 ~~~~~~~C~l~~~----~~~~~~~sLk~L~L~~c~i-~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~----i~~~~~Lk~ 90 (301)
+|+++++|..-.. +...++..++++.++||.- .++++......|+.|-.+++..|..+..-. -.+|.+|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 4566666655431 1224455566666666643 235666666666666666666664432211 124677778
Q ss_pred EEEEeeCCCceeEe-----ecCceeEEEEcCCC----CCCccccccccccceEeecccc-cchHHHHHHhccCCCccEEE
Q 043541 91 FMVRNEDRLARVSI-----CGPNVRLVDISSLH----APCGINVALCKNLKEFKLFKIS-ITNEWLCNQFSELPFLEYVE 160 (301)
Q Consensus 91 L~i~~C~~l~~i~i-----~ap~L~~f~~~g~~----~~~~i~~~~c~~Lk~L~L~~~~-It~~~l~~L~~~cp~LE~L~ 160 (301)
+..++|..+.+..+ ++++|+.+...++. ..+..--.+|+.|+.+++..|. ++|..+..+..+||.|+.|.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 88887776554333 46788887777766 2233345677788888887776 77777778888888888887
Q ss_pred e-----eeeccc-------------ceEEeccCCCceeEEe----cCCCeeEEEEcc
Q 043541 161 I-----FRCMKI-------------RKLLVRSCNTLDEFKL----DTPNLSVFDYEG 195 (301)
Q Consensus 161 L-----~~~l~I-------------~~L~l~~C~~L~~i~i----~aPnL~sf~y~g 195 (301)
+ +.-.+| ..+++++|+..++... .+|||+..+..+
T Consensus 379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELID 435 (483)
T ss_pred hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeec
Confidence 7 111111 1667777766544322 456776655443
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.06 E-value=1.4e-05 Score=87.38 Aligned_cols=93 Identities=22% Similarity=0.269 Sum_probs=44.5
Q ss_pred ecccCccccCC-CCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE--EcCCCCCccEEEEEeeCC
Q 043541 22 IPQTYCKLDSH-TRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL--EFLNLGKLSKFMVRNEDR 98 (301)
Q Consensus 22 ~~~~~C~l~~~-~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L--~i~~~~~Lk~L~i~~C~~ 98 (301)
+.+.++.+..- .+..++++|+.|+|+++.... .+.. .+.+++||.|+|.+|..+..+ .+.++++|+.|++++|..
T Consensus 616 L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~-~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~ 693 (1153)
T PLN03210 616 LQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK-EIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCEN 693 (1153)
T ss_pred EECcCccccccccccccCCCCCEEECCCCCCcC-cCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCC
Confidence 44455554331 123446677777776654211 1111 345666666666666654433 223345555555555554
Q ss_pred CceeEe--ecCceeEEEEcC
Q 043541 99 LARVSI--CGPNVRLVDISS 116 (301)
Q Consensus 99 l~~i~i--~ap~L~~f~~~g 116 (301)
++.+.. +.++|+++.+.|
T Consensus 694 L~~Lp~~i~l~sL~~L~Lsg 713 (1153)
T PLN03210 694 LEILPTGINLKSLYRLNLSG 713 (1153)
T ss_pred cCccCCcCCCCCCCEEeCCC
Confidence 443321 234444444443
No 4
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=5.3e-07 Score=83.60 Aligned_cols=128 Identities=16% Similarity=0.260 Sum_probs=93.6
Q ss_pred CCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE----EcCCCCCccEEEEEeeCCCcee---Ee--ecC
Q 043541 37 TLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL----EFLNLGKLSKFMVRNEDRLARV---SI--CGP 107 (301)
Q Consensus 37 ~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L----~i~~~~~Lk~L~i~~C~~l~~i---~i--~ap 107 (301)
.|..||.|+|.|....|.....++. -.+|+.|+|+.|.|+..- -+++|.+|..|++++|...++. .+ -.+
T Consensus 208 ~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise 286 (419)
T KOG2120|consen 208 QCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISE 286 (419)
T ss_pred HHHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhch
Confidence 3788999999999887665555554 567999999999998543 3567999999999999744332 11 257
Q ss_pred ceeEEEEcCCCCC-----CccccccccccceEeecccc-cchHHHHHHhccCCCccEEEeeeecc
Q 043541 108 NVRLVDISSLHAP-----CGINVALCKNLKEFKLFKIS-ITNEWLCNQFSELPFLEYVEIFRCMK 166 (301)
Q Consensus 108 ~L~~f~~~g~~~~-----~~i~~~~c~~Lk~L~L~~~~-It~~~l~~L~~~cp~LE~L~L~~~l~ 166 (301)
+|..+..+|.... ...-...|++|..|+|+++. ++++-++. +-.++-||+|.+-.|-.
T Consensus 287 ~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~-~~kf~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 287 TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFKFNYLQHLSLSRCYD 350 (419)
T ss_pred hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHH-HHhcchheeeehhhhcC
Confidence 8888888887622 22346789999999998875 88755544 45788888888744433
No 5
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.05 E-value=4.3e-07 Score=88.36 Aligned_cols=147 Identities=21% Similarity=0.332 Sum_probs=91.9
Q ss_pred CCCCCCcEEEecccc-cChHHHHHHHhcCCcccEEeeecCCCceEEE----cCCCCCccEEEEEeeCCCce-----eEee
Q 043541 36 VTLSSLRELGLFKCA-ANDEAIRDIVAGCPLIECLKIIDCRGLKSLE----FLNLGKLSKFMVRNEDRLAR-----VSIC 105 (301)
Q Consensus 36 ~~~~sLk~L~L~~c~-i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~----i~~~~~Lk~L~i~~C~~l~~-----i~i~ 105 (301)
..+++|+.|+|.++. ++|.++..++..||.||.|.+.+|..+.... ..+|++|++|+++.|.++.+ +...
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~ 319 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKN 319 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHh
Confidence 447888888888887 7788888888888888888888887643221 23478888888888875433 2224
Q ss_pred cCceeEEEEcCCC--------------C-----CCccccccccccceEeecccccchHHHHHHhccCCCc-cEEEeeeec
Q 043541 106 GPNVRLVDISSLH--------------A-----PCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFL-EYVEIFRCM 165 (301)
Q Consensus 106 ap~L~~f~~~g~~--------------~-----~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~L-E~L~L~~~l 165 (301)
+|+++.+...+.. . .......+|++++.+.+..+.+++......+.+||.| +.+.+....
T Consensus 320 c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~ 399 (482)
T KOG1947|consen 320 CPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCR 399 (482)
T ss_pred CcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhcc
Confidence 6666665432221 1 0112456777777777777666666666667777777 444332111
Q ss_pred c--cceEEeccCCCceeEE
Q 043541 166 K--IRKLLVRSCNTLDEFK 182 (301)
Q Consensus 166 ~--I~~L~l~~C~~L~~i~ 182 (301)
. ...|.+..|...+.-.
T Consensus 400 ~~~l~~L~l~~~~~~t~~~ 418 (482)
T KOG1947|consen 400 SDSLRVLNLSDCRLVTDKG 418 (482)
T ss_pred CCccceEecccCccccccc
Confidence 1 2356666665544433
No 6
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.99 E-value=1.8e-06 Score=83.91 Aligned_cols=125 Identities=19% Similarity=0.296 Sum_probs=87.2
Q ss_pred CCCCCcEEEecccc-cChHHHHHHHhcCCcccEEeeecC-CCc------eEEEcCCCCCccEEEEEeeCCCceeEe----
Q 043541 37 TLSSLRELGLFKCA-ANDEAIRDIVAGCPLIECLKIIDC-RGL------KSLEFLNLGKLSKFMVRNEDRLARVSI---- 104 (301)
Q Consensus 37 ~~~sLk~L~L~~c~-i~d~~L~~Lis~Cp~LE~L~L~~C-~~l------~~L~i~~~~~Lk~L~i~~C~~l~~i~i---- 104 (301)
.+++|+.|.+.+|. +.+.++..++..||.|++|++.+| ... .......|++|+++++..|..+.+..+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 48899999999885 456778899999999999999884 221 111334578899999998876666543
Q ss_pred -ecCceeEEEEcCCCC----CCccccccccccceEeecccc-cchHHHHHHhccCCCccEEEe
Q 043541 105 -CGPNVRLVDISSLHA----PCGINVALCKNLKEFKLFKIS-ITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 105 -~ap~L~~f~~~g~~~----~~~i~~~~c~~Lk~L~L~~~~-It~~~l~~L~~~cp~LE~L~L 161 (301)
.||+|+++...++.. +......+|++|++|++.+|. +++..+.....+|++++.|.+
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 367777777444431 122235677778888887775 667777777777777777665
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.87 E-value=2.9e-05 Score=83.09 Aligned_cols=125 Identities=10% Similarity=0.139 Sum_probs=58.7
Q ss_pred CCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEEcCCCCCccEEEEEeeCCCcee--Ee-ecCceeEE
Q 043541 36 VTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARV--SI-CGPNVRLV 112 (301)
Q Consensus 36 ~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~i~~~~~Lk~L~i~~C~~l~~i--~i-~ap~L~~f 112 (301)
.++++|+.|+|.++.+.......+..+++.|++|+|+++.-...+....+++|+.|+++++.--..+ .+ ..++|+.+
T Consensus 90 ~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 169 (968)
T PLN00113 90 FRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVL 169 (968)
T ss_pred hCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEE
Confidence 3467777777777665433333444566677777776653211112223455666666554311010 01 23455555
Q ss_pred EEcCCC--CCCccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 113 DISSLH--APCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 113 ~~~g~~--~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
+..+.. ......+..+++|+.|++.++.++.. +...+.++++|+.|++
T Consensus 170 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ-IPRELGQMKSLKWIYL 219 (968)
T ss_pred ECccCcccccCChhhhhCcCCCeeeccCCCCcCc-CChHHcCcCCccEEEC
Confidence 554443 11122344555555555555544321 1122234455555544
No 8
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.83 E-value=1.4e-05 Score=69.35 Aligned_cols=123 Identities=19% Similarity=0.202 Sum_probs=48.3
Q ss_pred CCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE-EcCCCCCccEEEEEeeCCCceeE--e--ecCce
Q 043541 35 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL-EFLNLGKLSKFMVRNEDRLARVS--I--CGPNV 109 (301)
Q Consensus 35 ~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L-~i~~~~~Lk~L~i~~C~~l~~i~--i--~ap~L 109 (301)
-.+.-.+|.|+|++..+. .++++...+..|+.|+|+++ +++.+ .+.++++|+.|++++ ..++++. + ..|+|
T Consensus 15 ~~n~~~~~~L~L~~n~I~--~Ie~L~~~l~~L~~L~Ls~N-~I~~l~~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS--TIENLGATLDKLEVLDLSNN-QITKLEGLPGLPRLKTLDLSN-NRISSISEGLDKNLPNL 90 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--S-S---S-CHHHHHH-TT-
T ss_pred cccccccccccccccccc--cccchhhhhcCCCEEECCCC-CCccccCccChhhhhhcccCC-CCCCccccchHHhCCcC
Confidence 355667999999999884 35566667789999999996 55544 244568899998874 2444442 2 36999
Q ss_pred eEEEEcCCC-CCC-c-cccccccccceEeecccccchHH--HHHHhccCCCccEEEe
Q 043541 110 RLVDISSLH-APC-G-INVALCKNLKEFKLFKISITNEW--LCNQFSELPFLEYVEI 161 (301)
Q Consensus 110 ~~f~~~g~~-~~~-~-i~~~~c~~Lk~L~L~~~~It~~~--l~~L~~~cp~LE~L~L 161 (301)
+.+...+.. ..+ . ..+..+++|+.|+|.++.|+++. -...+..+|+|+.|+-
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 999998776 222 1 24678999999999999888643 2345788999999985
No 9
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.76 E-value=6.3e-05 Score=80.52 Aligned_cols=122 Identities=11% Similarity=0.154 Sum_probs=50.9
Q ss_pred CCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE--EcCCCCCccEEEEEeeCCCceeE---eecCceeEE
Q 043541 38 LSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL--EFLNLGKLSKFMVRNEDRLARVS---ICGPNVRLV 112 (301)
Q Consensus 38 ~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L--~i~~~~~Lk~L~i~~C~~l~~i~---i~ap~L~~f 112 (301)
+++|++|+|.++.+.. .+..-+.++++|+.|+|+++.-...+ .+.++++|+.|++++|.-...+. -..++|+.+
T Consensus 139 l~~L~~L~Ls~n~~~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 139 IPNLETLDLSNNMLSG-EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217 (968)
T ss_pred cCCCCEEECcCCcccc-cCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence 4444444444443321 11122344555666666554311111 12334556666665553111110 123445555
Q ss_pred EEcCCCC--CCccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 113 DISSLHA--PCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 113 ~~~g~~~--~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
+..+... .....++.+++|++|++.++.+++. +...+.++++|+.|.+
T Consensus 218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L 267 (968)
T PLN00113 218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP-IPSSLGNLKNLQYLFL 267 (968)
T ss_pred ECcCCccCCcCChhHhcCCCCCEEECcCceeccc-cChhHhCCCCCCEEEC
Confidence 5444321 1122345555666666655554321 1222344555555554
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.61 E-value=0.0001 Score=80.87 Aligned_cols=143 Identities=18% Similarity=0.230 Sum_probs=79.9
Q ss_pred CCCCCcEEEecccccCh--HHH----HHHHhcCCcccEEeeecCCCceEE--EcCCCCCccEEEEEeeCCCceeEe--ec
Q 043541 37 TLSSLRELGLFKCAAND--EAI----RDIVAGCPLIECLKIIDCRGLKSL--EFLNLGKLSKFMVRNEDRLARVSI--CG 106 (301)
Q Consensus 37 ~~~sLk~L~L~~c~i~d--~~L----~~Lis~Cp~LE~L~L~~C~~l~~L--~i~~~~~Lk~L~i~~C~~l~~i~i--~a 106 (301)
++++|+.|.+.++.... ..+ ......++.|++|+|++|..+..+ .+.++++|+.|++.+|..++.+.. ..
T Consensus 745 ~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L 824 (1153)
T PLN03210 745 RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINL 824 (1153)
T ss_pred cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCc
Confidence 56778888777654211 111 112234567888888877655443 345677788888888776665532 35
Q ss_pred CceeEEEEcCCCCCCccccccccccceEeecccccchHHHHHHhccCCCccEEEee-----eecc--------cceEEec
Q 043541 107 PNVRLVDISSLHAPCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEIF-----RCMK--------IRKLLVR 173 (301)
Q Consensus 107 p~L~~f~~~g~~~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L~-----~~l~--------I~~L~l~ 173 (301)
++|+++++.|+..-.. -.....+|+.|+|.++.|+. +..-+..+++|+.|++. +.+. +..+.+.
T Consensus 825 ~sL~~L~Ls~c~~L~~-~p~~~~nL~~L~Ls~n~i~~--iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~ 901 (1153)
T PLN03210 825 ESLESLDLSGCSRLRT-FPDISTNISDLNLSRTGIEE--VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFS 901 (1153)
T ss_pred cccCEEECCCCCcccc-ccccccccCEeECCCCCCcc--ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecC
Confidence 6777777776541100 01123567777777766552 22234456666666551 1111 1155667
Q ss_pred cCCCceeEE
Q 043541 174 SCNTLDEFK 182 (301)
Q Consensus 174 ~C~~L~~i~ 182 (301)
+|..|+.+.
T Consensus 902 ~C~~L~~~~ 910 (1153)
T PLN03210 902 DCGALTEAS 910 (1153)
T ss_pred CCccccccc
Confidence 777666554
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.50 E-value=2.3e-05 Score=72.35 Aligned_cols=125 Identities=15% Similarity=0.165 Sum_probs=83.6
Q ss_pred CCCCCCcEEEecccccCh---HHHHHHHhcCCcccEEeeecCCCc----eEE--EcCCC-CCccEEEEEeeCCC----ce
Q 043541 36 VTLSSLRELGLFKCAAND---EAIRDIVAGCPLIECLKIIDCRGL----KSL--EFLNL-GKLSKFMVRNEDRL----AR 101 (301)
Q Consensus 36 ~~~~sLk~L~L~~c~i~d---~~L~~Lis~Cp~LE~L~L~~C~~l----~~L--~i~~~-~~Lk~L~i~~C~~l----~~ 101 (301)
.++++|+.|+++++.+.+ ..+..+..+ +.|++|++++|.-- ..+ .+..+ ++|+.|++++|.-- ..
T Consensus 78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 78 TKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred HhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 347799999999998753 566667777 88999999987521 111 12334 78999999988611 11
Q ss_pred eE---eecCceeEEEEcCCCCC---C---ccccccccccceEeecccccchHHHH---HHhccCCCccEEEe
Q 043541 102 VS---ICGPNVRLVDISSLHAP---C---GINVALCKNLKEFKLFKISITNEWLC---NQFSELPFLEYVEI 161 (301)
Q Consensus 102 i~---i~ap~L~~f~~~g~~~~---~---~i~~~~c~~Lk~L~L~~~~It~~~l~---~L~~~cp~LE~L~L 161 (301)
+. -..++|+++++.++... . ...+...++|+.|+++++.+++.... ..+..++.|+.|++
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~l 228 (319)
T cd00116 157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNL 228 (319)
T ss_pred HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEec
Confidence 11 12367888888776411 1 11234456999999999998876654 44567888888887
No 12
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.20 E-value=0.00028 Score=65.13 Aligned_cols=141 Identities=13% Similarity=0.044 Sum_probs=93.0
Q ss_pred ceecccCccccCC------CCCCCCCCCcEEEecccccC--hHHHH---HHHhcCCcccEEeeecCCCceEE--Ec----
Q 043541 20 KYIPQTYCKLDSH------TRNVTLSSLRELGLFKCAAN--DEAIR---DIVAGCPLIECLKIIDCRGLKSL--EF---- 82 (301)
Q Consensus 20 ~~~~~~~C~l~~~------~~~~~~~sLk~L~L~~c~i~--d~~L~---~Lis~Cp~LE~L~L~~C~~l~~L--~i---- 82 (301)
.++.+++|.+... ......++|++|.+.+..+. +.++. .....++.|+.|++++|.--... .+
T Consensus 26 ~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 105 (319)
T cd00116 26 QVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLL 105 (319)
T ss_pred cEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHh
Confidence 4667778877321 12245788999999998776 33333 34445779999999997632111 11
Q ss_pred CCCCCccEEEEEeeCCC----ceeE--e-ec-CceeEEEEcCCCCC------CccccccccccceEeecccccchHHHHH
Q 043541 83 LNLGKLSKFMVRNEDRL----ARVS--I-CG-PNVRLVDISSLHAP------CGINVALCKNLKEFKLFKISITNEWLCN 148 (301)
Q Consensus 83 ~~~~~Lk~L~i~~C~~l----~~i~--i-~a-p~L~~f~~~g~~~~------~~i~~~~c~~Lk~L~L~~~~It~~~l~~ 148 (301)
.+ ++|++|++++|.-- ..+. + .. ++|+.++..++... ....+.++++|++|++.++.++++.+..
T Consensus 106 ~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 184 (319)
T cd00116 106 RS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRA 184 (319)
T ss_pred cc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHH
Confidence 22 55999999988521 1110 1 23 78999998877611 1123567789999999999999877665
Q ss_pred Hh---ccCCCccEEEe
Q 043541 149 QF---SELPFLEYVEI 161 (301)
Q Consensus 149 L~---~~cp~LE~L~L 161 (301)
+. ..++.|+.|++
T Consensus 185 l~~~l~~~~~L~~L~L 200 (319)
T cd00116 185 LAEGLKANCNLEVLDL 200 (319)
T ss_pred HHHHHHhCCCCCEEec
Confidence 54 45568998887
No 13
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=6.2e-05 Score=70.08 Aligned_cols=157 Identities=15% Similarity=0.254 Sum_probs=109.3
Q ss_pred CCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCce---EEEcCCCCCccEEEEEeeCCCceeEe-----ecCceeE
Q 043541 40 SLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLK---SLEFLNLGKLSKFMVRNEDRLARVSI-----CGPNVRL 111 (301)
Q Consensus 40 sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~---~L~i~~~~~Lk~L~i~~C~~l~~i~i-----~ap~L~~ 111 (301)
.|+.|+|+.-.++-+.++.+++.|..|+.|+|++-. +. ...+..=.+|..|+++.|.++++... .|..|+.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~-LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLR-LDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccc-cCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 388999999988889999999999999999998742 10 01122116799999999998876543 5677887
Q ss_pred EEEcCCC--CC-Ccccccc-ccccceEeecccc--cchHHHHHHhccCCCccEEEeeeecccc--------------eEE
Q 043541 112 VDISSLH--AP-CGINVAL-CKNLKEFKLFKIS--ITNEWLCNQFSELPFLEYVEIFRCMKIR--------------KLL 171 (301)
Q Consensus 112 f~~~g~~--~~-~~i~~~~-c~~Lk~L~L~~~~--It~~~l~~L~~~cp~LE~L~L~~~l~I~--------------~L~ 171 (301)
+..+++. .+ +.+.+.+ -.+|+.|+++++. .-+..+..+...||+|-.|++..+..++ +|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 7665554 22 3332222 2579999999875 6666788889999999999994333322 778
Q ss_pred eccCCCc---eeEEe-cCCCeeEEEEccce
Q 043541 172 VRSCNTL---DEFKL-DTPNLSVFDYEGDM 197 (301)
Q Consensus 172 l~~C~~L---~~i~i-~aPnL~sf~y~g~~ 197 (301)
++.|..+ +-+++ ..|.|..++..|.+
T Consensus 345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 8888544 23443 55777777766643
No 14
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=4.7e-05 Score=73.81 Aligned_cols=125 Identities=16% Similarity=0.203 Sum_probs=69.7
Q ss_pred CCCCCcEEEecccccCh-HHHHHHHhcCCcccEEeeecCC---CceEEEcCCCCCccEEEEEeeC----CCceeEeecCc
Q 043541 37 TLSSLRELGLFKCAAND-EAIRDIVAGCPLIECLKIIDCR---GLKSLEFLNLGKLSKFMVRNED----RLARVSICGPN 108 (301)
Q Consensus 37 ~~~sLk~L~L~~c~i~d-~~L~~Lis~Cp~LE~L~L~~C~---~l~~L~i~~~~~Lk~L~i~~C~----~l~~i~i~ap~ 108 (301)
.||++|.|+|++.-+.. ..+..++...|+||.|+|+.-. ...+...-.++.||.|.++.|. .+..+...+|+
T Consensus 144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs 223 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS 223 (505)
T ss_pred hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence 36666666666665543 5566666666666666665521 1111111125789999999996 33344456788
Q ss_pred eeEEEEcCCC--CCCccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 109 VRLVDISSLH--APCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 109 L~~f~~~g~~--~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
|+.+...+.. ........-.+.|+.|+|+++.+-+..-......+|.|+.|.+
T Consensus 224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 8887766652 1111223344567777777766333332233445566665555
No 15
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.03 E-value=0.00038 Score=72.42 Aligned_cols=124 Identities=21% Similarity=0.251 Sum_probs=85.0
Q ss_pred CCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE-EcCCCCCccEEEEEeeC-----CCceeEeecCce
Q 043541 36 VTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL-EFLNLGKLSKFMVRNED-----RLARVSICGPNV 109 (301)
Q Consensus 36 ~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L-~i~~~~~Lk~L~i~~C~-----~l~~i~i~ap~L 109 (301)
..+|+||+|.+.+.....+++..+..+.|+|..||++++ +++.+ .++.+++|+.|.+++=. .+.++ .+-.+|
T Consensus 145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~L-F~L~~L 222 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNLSGISRLKNLQVLSMRNLEFESYQDLIDL-FNLKKL 222 (699)
T ss_pred hhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCcHHHhccccHHHHhccCCCCCchhhHHHH-hcccCC
Confidence 459999999999999877789999999999999999996 55444 23445556555555211 11111 023456
Q ss_pred eEEEEcCCCCC--Cc-c-----ccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 110 RLVDISSLHAP--CG-I-----NVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 110 ~~f~~~g~~~~--~~-i-----~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
+.|+.+..... .. + --..+++|+.|+.++.+++++.++.+...-|+|+....
T Consensus 223 ~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~ 282 (699)
T KOG3665|consen 223 RVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAA 282 (699)
T ss_pred CeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhh
Confidence 66666544311 00 0 12357889999998888999999988888888887765
No 16
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.63 E-value=0.00031 Score=66.47 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=22.5
Q ss_pred cccccccceEeecccccchHHHH---HHhccCCCccEEEe
Q 043541 125 VALCKNLKEFKLFKISITNEWLC---NQFSELPFLEYVEI 161 (301)
Q Consensus 125 ~~~c~~Lk~L~L~~~~It~~~l~---~L~~~cp~LE~L~L 161 (301)
+..++.|+.+++..+.|..++.. .-+..||.||+|++
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl 220 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDL 220 (382)
T ss_pred HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeec
Confidence 45556677777766665554442 23466777777776
No 17
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=96.42 E-value=0.0026 Score=37.61 Aligned_cols=25 Identities=32% Similarity=0.700 Sum_probs=22.7
Q ss_pred CCcEEEecccccCh-HHHHHHHhcCC
Q 043541 40 SLRELGLFKCAAND-EAIRDIVAGCP 64 (301)
Q Consensus 40 sLk~L~L~~c~i~d-~~L~~Lis~Cp 64 (301)
+||+|+|..|.+.+ +.++.|+++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 59999999999865 68999999998
No 18
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=95.97 E-value=0.012 Score=41.42 Aligned_cols=16 Identities=19% Similarity=0.137 Sum_probs=9.5
Q ss_pred cccccccceEeecccc
Q 043541 125 VALCKNLKEFKLFKIS 140 (301)
Q Consensus 125 ~~~c~~Lk~L~L~~~~ 140 (301)
+.++++|+.|+++++.
T Consensus 45 f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 45 FSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTTSTTESEEEETSSS
T ss_pred HcCCCCCCEEeCcCCc
Confidence 4556666666666554
No 19
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.0013 Score=63.91 Aligned_cols=109 Identities=17% Similarity=0.162 Sum_probs=77.4
Q ss_pred CCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeec--CCCceEE-Ec-CCCCCccEEEEEeeCCCceeEeecCcee
Q 043541 35 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIID--CRGLKSL-EF-LNLGKLSKFMVRNEDRLARVSICGPNVR 110 (301)
Q Consensus 35 ~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~--C~~l~~L-~i-~~~~~Lk~L~i~~C~~l~~i~i~ap~L~ 110 (301)
..++.+|+..+|+++.+.+.+...-+..||++.+|+|+. .+++..+ .+ .-+|+|+.|+++.=. |.
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-----------l~ 185 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-----------LS 185 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-----------cc
Confidence 356999999999999998877768899999999999987 1222111 11 225777777776311 00
Q ss_pred EEEEcCCCCCCccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 111 LVDISSLHAPCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 111 ~f~~~g~~~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
.+.- ...-...+.||.|.+.+|.++...++..+..||.||.|.+
T Consensus 186 ~~~~-------s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L 229 (505)
T KOG3207|consen 186 NFIS-------SNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYL 229 (505)
T ss_pred CCcc-------ccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhh
Confidence 0000 0112256788999999999999889999999999999988
No 20
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=95.32 E-value=0.0036 Score=63.16 Aligned_cols=96 Identities=21% Similarity=0.298 Sum_probs=50.8
Q ss_pred cCCcccEEeeecCCCceEE---EcCCCCCccEEEEEeeCCCceeEee----cCceeEEEEcCCC-CCCc-cccccccccc
Q 043541 62 GCPLIECLKIIDCRGLKSL---EFLNLGKLSKFMVRNEDRLARVSIC----GPNVRLVDISSLH-APCG-INVALCKNLK 132 (301)
Q Consensus 62 ~Cp~LE~L~L~~C~~l~~L---~i~~~~~Lk~L~i~~C~~l~~i~i~----ap~L~~f~~~g~~-~~~~-i~~~~c~~Lk 132 (301)
+|..+|+|+|+.- .+..+ -+.|+.+|+.|+++. ..++.|+++ +++|+.++.+... ..++ -.+.+.+.|+
T Consensus 267 ~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~-NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le 344 (873)
T KOG4194|consen 267 GLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSY-NAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLE 344 (873)
T ss_pred eecccceeecccc-hhhhhhcccccccchhhhhccch-hhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhh
Confidence 4555666665541 22222 123566677777763 256667665 5777777766544 2222 2355566667
Q ss_pred eEeecccccchHHHH-HHhccCCCccEEEe
Q 043541 133 EFKLFKISITNEWLC-NQFSELPFLEYVEI 161 (301)
Q Consensus 133 ~L~L~~~~It~~~l~-~L~~~cp~LE~L~L 161 (301)
.|+|.++.|+. +. ..+-+..+|+.|++
T Consensus 345 ~LnLs~Nsi~~--l~e~af~~lssL~~LdL 372 (873)
T KOG4194|consen 345 ELNLSHNSIDH--LAEGAFVGLSSLHKLDL 372 (873)
T ss_pred hhcccccchHH--HHhhHHHHhhhhhhhcC
Confidence 77776665432 11 12333455666665
No 21
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=95.24 E-value=0.0079 Score=42.30 Aligned_cols=56 Identities=25% Similarity=0.328 Sum_probs=33.0
Q ss_pred CCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCccEEEEEee
Q 043541 39 SSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMVRNE 96 (301)
Q Consensus 39 ~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i~~C 96 (301)
|+|++|.++++.+.+ --.....+++.|+.|+++++ .++.+. +.++++|+.|+++++
T Consensus 1 p~L~~L~l~~n~l~~-i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTE-IPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESE-ECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCc-cCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 467777777776542 01123346677777777753 455553 345667777776654
No 22
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.21 E-value=0.0054 Score=63.95 Aligned_cols=76 Identities=20% Similarity=0.283 Sum_probs=40.2
Q ss_pred CCCccEEEEEeeC----CCceeEeecCceeEEEEcCCCCCCccccccccccceEeecccccch-HHHHHHhccCCCccEE
Q 043541 85 LGKLSKFMVRNED----RLARVSICGPNVRLVDISSLHAPCGINVALCKNLKEFKLFKISITN-EWLCNQFSELPFLEYV 159 (301)
Q Consensus 85 ~~~Lk~L~i~~C~----~l~~i~i~ap~L~~f~~~g~~~~~~i~~~~c~~Lk~L~L~~~~It~-~~l~~L~~~cp~LE~L 159 (301)
+|+|++|.|.+=. .+.++--..|||..|+.+|..-.--.+++..+||+.|.+.+..+.. +.+..+ .+...|+.|
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~L-F~L~~L~vL 225 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDL-FNLKKLRVL 225 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHH-hcccCCCee
Confidence 4566666655321 1111222346666666665541111245667777777777776554 334443 346667777
Q ss_pred Ee
Q 043541 160 EI 161 (301)
Q Consensus 160 ~L 161 (301)
++
T Consensus 226 DI 227 (699)
T KOG3665|consen 226 DI 227 (699)
T ss_pred ec
Confidence 76
No 23
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=95.16 E-value=0.0028 Score=63.98 Aligned_cols=51 Identities=20% Similarity=0.278 Sum_probs=30.6
Q ss_pred CceeEEEEcCCC-----CCCccccccccccceEeecccc---cchHHHHHHhccCCCccEEEe
Q 043541 107 PNVRLVDISSLH-----APCGINVALCKNLKEFKLFKIS---ITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 107 p~L~~f~~~g~~-----~~~~i~~~~c~~Lk~L~L~~~~---It~~~l~~L~~~cp~LE~L~L 161 (301)
.||+.++.+... +.-.+.+.|.++|++|.+.++. |+..+ ++++++||.|++
T Consensus 365 ssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krA----fsgl~~LE~LdL 423 (873)
T KOG4194|consen 365 SSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRA----FSGLEALEHLDL 423 (873)
T ss_pred hhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhh----hccCcccceecC
Confidence 455555544332 2222346677888888888776 44443 456777888877
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=94.63 E-value=0.013 Score=50.80 Aligned_cols=77 Identities=17% Similarity=0.170 Sum_probs=16.4
Q ss_pred cCCcccEEeeecCC--CceEEEcCCCCCccEEEEEeeCCCceeEeecCceeEEEEcCCCCCCccccccccccceEeeccc
Q 043541 62 GCPLIECLKIIDCR--GLKSLEFLNLGKLSKFMVRNEDRLARVSICGPNVRLVDISSLHAPCGINVALCKNLKEFKLFKI 139 (301)
Q Consensus 62 ~Cp~LE~L~L~~C~--~l~~L~i~~~~~Lk~L~i~~C~~l~~i~i~ap~L~~f~~~g~~~~~~i~~~~c~~Lk~L~L~~~ 139 (301)
++-.+++|+|.++. .++.+.. .+.+|+.|+++++. ++.++ ++.++++|+.|.++++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~-~l~~L~~L~Ls~N~-I~~l~--------------------~l~~L~~L~~L~L~~N 74 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGA-TLDKLEVLDLSNNQ-ITKLE--------------------GLPGLPRLKTLDLSNN 74 (175)
T ss_dssp -------------------S--T-T-TT--EEE-TTS---S--T--------------------T----TT--EEE--SS
T ss_pred cccccccccccccccccccchhh-hhcCCCEEECCCCC-Ccccc--------------------CccChhhhhhcccCCC
Confidence 34456777776642 1222221 24566777666542 22211 2445566666666666
Q ss_pred ccchHHHHHHhccCCCccEEEe
Q 043541 140 SITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 140 ~It~~~l~~L~~~cp~LE~L~L 161 (301)
.|++-. ..+..++|+|+.|.+
T Consensus 75 ~I~~i~-~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 75 RISSIS-EGLDKNLPNLQELYL 95 (175)
T ss_dssp ---S-C-HHHHHH-TT--EEE-
T ss_pred CCCccc-cchHHhCCcCCEEEC
Confidence 655311 122234666666665
No 25
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=94.06 E-value=0.049 Score=31.81 Aligned_cols=24 Identities=33% Similarity=0.603 Sum_probs=20.2
Q ss_pred CCCCcEEEecccc-cChHHHHHHHh
Q 043541 38 LSSLRELGLFKCA-ANDEAIRDIVA 61 (301)
Q Consensus 38 ~~sLk~L~L~~c~-i~d~~L~~Lis 61 (301)
|++|+.|+|++|. ++|.++++++.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 5789999999995 78899988865
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=92.78 E-value=0.45 Score=50.46 Aligned_cols=11 Identities=18% Similarity=0.413 Sum_probs=5.3
Q ss_pred CceeEEEEcCC
Q 043541 107 PNVRLVDISSL 117 (301)
Q Consensus 107 p~L~~f~~~g~ 117 (301)
|+|+.+++++.
T Consensus 302 ~~L~~LdLS~N 312 (788)
T PRK15387 302 PGLQELSVSDN 312 (788)
T ss_pred cccceeECCCC
Confidence 44555555443
No 27
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.70 E-value=0.06 Score=50.04 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=63.0
Q ss_pred HHhcCCcccEEeeecCC-CceEE-----EcCCCCCccEEEEEeeC-------CC----c-----eeEeecCceeEEEEcC
Q 043541 59 IVAGCPLIECLKIIDCR-GLKSL-----EFLNLGKLSKFMVRNED-------RL----A-----RVSICGPNVRLVDISS 116 (301)
Q Consensus 59 Lis~Cp~LE~L~L~~C~-~l~~L-----~i~~~~~Lk~L~i~~C~-------~l----~-----~i~i~ap~L~~f~~~g 116 (301)
-+.+||.|+..+|++-- |.+.. -|++-..|++|.+++|. .+ . .-.-+.|.|+++...-
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 34577777777776621 22211 12333567777777774 01 1 1123578888886543
Q ss_pred CC-CCC-----ccccccccccceEeecccccchHHHHHHh----ccCCCccEEEe
Q 043541 117 LH-APC-----GINVALCKNLKEFKLFKISITNEWLCNQF----SELPFLEYVEI 161 (301)
Q Consensus 117 ~~-~~~-----~i~~~~c~~Lk~L~L~~~~It~~~l~~L~----~~cp~LE~L~L 161 (301)
.. ... ...+..=.+|+.+.+..+.|..+++..++ ..|.+||.|++
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDl 221 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDL 221 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeec
Confidence 33 111 11233447899999999999988776553 67899999998
No 28
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=92.36 E-value=0.13 Score=30.00 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=20.2
Q ss_pred ccccceEeecccc-cchHHHHHHh
Q 043541 128 CKNLKEFKLFKIS-ITNEWLCNQF 150 (301)
Q Consensus 128 c~~Lk~L~L~~~~-It~~~l~~L~ 150 (301)
|++|++|++.+|. |||+++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 6899999999996 9999998764
No 29
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.01 E-value=0.048 Score=48.40 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=32.5
Q ss_pred ccccChHHHHHHHhcCCcccEEeeecCCC-----ceEEEcCCCCCccEEEEEeeCCCcee
Q 043541 48 KCAANDEAIRDIVAGCPLIECLKIIDCRG-----LKSLEFLNLGKLSKFMVRNEDRLARV 102 (301)
Q Consensus 48 ~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~-----l~~L~i~~~~~Lk~L~i~~C~~l~~i 102 (301)
++.|.-+++.+| .+++.|+.|.+.+|+. |+.+.=. .++|+.|+++.|.++++-
T Consensus 110 ds~I~~eGle~L-~~l~~i~~l~l~~ck~~dD~~L~~l~~~-~~~L~~L~lsgC~rIT~~ 167 (221)
T KOG3864|consen 110 DSSIMYEGLEHL-RDLRSIKSLSLANCKYFDDWCLERLGGL-APSLQDLDLSGCPRITDG 167 (221)
T ss_pred CchHHHHHHHHH-hccchhhhheeccccchhhHHHHHhccc-ccchheeeccCCCeechh
Confidence 333444666665 4677788888888774 3333222 267777777777766653
No 30
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=91.87 E-value=0.12 Score=30.49 Aligned_cols=25 Identities=28% Similarity=0.354 Sum_probs=21.6
Q ss_pred ccceEeecccccchH-HHHHHhccCC
Q 043541 130 NLKEFKLFKISITNE-WLCNQFSELP 154 (301)
Q Consensus 130 ~Lk~L~L~~~~It~~-~l~~L~~~cp 154 (301)
+||+|+|.++.++++ .++.++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 589999999987666 6899999997
No 31
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=91.59 E-value=0.15 Score=33.79 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=24.6
Q ss_pred CCCcEEEecccccChHHHHHHHhcCCcccEEeeecC
Q 043541 39 SSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDC 74 (301)
Q Consensus 39 ~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C 74 (301)
++|+.|++.++.+.+ +..-+++++.|+.|+++++
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSS
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCC
Confidence 578899999888865 3334678888888888886
No 32
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.22 E-value=0.17 Score=28.72 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=17.6
Q ss_pred CCCCcEEEecccccChHHHHHHH
Q 043541 38 LSSLRELGLFKCAANDEAIRDIV 60 (301)
Q Consensus 38 ~~sLk~L~L~~c~i~d~~L~~Li 60 (301)
+++|++|+|+++.++|+++++++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 47899999999999988888875
No 33
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.17 E-value=0.011 Score=55.07 Aligned_cols=108 Identities=22% Similarity=0.327 Sum_probs=69.5
Q ss_pred CCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE-EcCCCCCccEEEEE-eeC-CCceeE--eecCceeE
Q 043541 37 TLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL-EFLNLGKLSKFMVR-NED-RLARVS--ICGPNVRL 111 (301)
Q Consensus 37 ~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L-~i~~~~~Lk~L~i~-~C~-~l~~i~--i~ap~L~~ 111 (301)
.+.+.|+|+.|||.+.|-. +...-|.||-|.|+- +.+.+| .+..|.+||.|.++ +|. .+.++. -++|+|++
T Consensus 17 dl~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSv-NkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSV-NKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCCCccHHH---HHHhcccceeEEeec-cccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 4677899999999988732 455678899999976 355555 24458889988887 342 344433 26788888
Q ss_pred EEEcCCC----CC--C-ccccccccccceEeecccccchHHHHHHh
Q 043541 112 VDISSLH----AP--C-GINVALCKNLKEFKLFKISITNEWLCNQF 150 (301)
Q Consensus 112 f~~~g~~----~~--~-~i~~~~c~~Lk~L~L~~~~It~~~l~~L~ 150 (301)
++..... .+ + ...+.-.+|||+|+ ...+|.+.++..+
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD--nv~VteeEle~AL 136 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD--NVPVTEEELEEAL 136 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc--CccccHHHHHHHH
Confidence 8765332 11 1 12356677888764 3446666665443
No 34
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=90.79 E-value=0.32 Score=32.17 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=11.2
Q ss_pred cccccccceEeecccccc
Q 043541 125 VALCKNLKEFKLFKISIT 142 (301)
Q Consensus 125 ~~~c~~Lk~L~L~~~~It 142 (301)
+..+++|+.|+++++.|+
T Consensus 20 l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 20 LSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp GTTCTTSSEEEETSSCCS
T ss_pred HhCCCCCCEEEecCCCCC
Confidence 556666666666666554
No 35
>PRK15386 type III secretion protein GogB; Provisional
Probab=89.94 E-value=0.61 Score=45.85 Aligned_cols=111 Identities=17% Similarity=0.235 Sum_probs=50.1
Q ss_pred cceecccCccccCCCCCCCCC-CCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEEcCCCCCccEEEEEeeC
Q 043541 19 SKYIPQTYCKLDSHTRNVTLS-SLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLEFLNLGKLSKFMVRNED 97 (301)
Q Consensus 19 ~~~~~~~~C~l~~~~~~~~~~-sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~i~~~~~Lk~L~i~~C~ 97 (301)
..++.+++|.+.. -+ .+| +|+.|.+.+|.........+ .+.|++|++.+|..+..+ . ++|+.|++. +.
T Consensus 54 l~~L~Is~c~L~s--LP-~LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sL--P--~sLe~L~L~-~n 122 (426)
T PRK15386 54 SGRLYIKDCDIES--LP-VLPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGL--P--ESVRSLEIK-GS 122 (426)
T ss_pred CCEEEeCCCCCcc--cC-CCCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccccc--c--cccceEEeC-CC
Confidence 3455666665443 22 233 47777776664321100111 246777777776655432 1 346666654 22
Q ss_pred CCceeEeecCceeEEEEcCCCCC--CccccccccccceEeecccc
Q 043541 98 RLARVSICGPNVRLVDISSLHAP--CGINVALCKNLKEFKLFKIS 140 (301)
Q Consensus 98 ~l~~i~i~ap~L~~f~~~g~~~~--~~i~~~~c~~Lk~L~L~~~~ 140 (301)
...++.---++|+.|.+.+.... ......-..+|+.|.+.+|.
T Consensus 123 ~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~ 167 (426)
T PRK15386 123 ATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCS 167 (426)
T ss_pred CCcccccCcchHhheeccccccccccccccccCCcccEEEecCCC
Confidence 22222211235566655432100 00000122567777777665
No 36
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=89.42 E-value=0.48 Score=50.08 Aligned_cols=33 Identities=9% Similarity=-0.063 Sum_probs=18.2
Q ss_pred CCCCcEEEecccccChHHHHHHHhcCCcccEEeeecC
Q 043541 38 LSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDC 74 (301)
Q Consensus 38 ~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C 74 (301)
+++|++|+|.++.+.. +..- -.+.|+.|+|++|
T Consensus 219 ~~nL~~L~Ls~N~Lts--LP~~--l~~~L~~L~Ls~N 251 (754)
T PRK15370 219 QGNIKTLYANSNQLTS--IPAT--LPDTIQEMELSIN 251 (754)
T ss_pred ccCCCEEECCCCcccc--CChh--hhccccEEECcCC
Confidence 4577777777776542 1110 0135677777665
No 37
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.19 E-value=0.09 Score=46.68 Aligned_cols=59 Identities=20% Similarity=0.341 Sum_probs=45.9
Q ss_pred CCCCCCcEEEecccccC-hHHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCccEEEEE
Q 043541 36 VTLSSLRELGLFKCAAN-DEAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMVR 94 (301)
Q Consensus 36 ~~~~sLk~L~L~~c~i~-d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i~ 94 (301)
.++++++.|++.+|... |..+..+....|+|++|+|++|+.+..-. +..+++|+.|.+.
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 56899999999999865 58899999999999999999999764321 1224666666665
No 38
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=89.13 E-value=0.11 Score=47.49 Aligned_cols=102 Identities=22% Similarity=0.267 Sum_probs=50.6
Q ss_pred CcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEEcCCCCCccEEEEEee--C---CCceeEeecCceeEEEEc
Q 043541 41 LRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLEFLNLGKLSKFMVRNE--D---RLARVSICGPNVRLVDIS 115 (301)
Q Consensus 41 Lk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~i~~~~~Lk~L~i~~C--~---~l~~i~i~ap~L~~f~~~ 115 (301)
.+.+.+..|....-.+..+....-.|+.|++.++.-.......-+++||.|+++.= + ++.-....||+|.++..+
T Consensus 20 v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls 99 (260)
T KOG2739|consen 20 VDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLS 99 (260)
T ss_pred hhhhhcchhhhcCCCcccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeec
Confidence 44455555543333333344444556666666652222334455678888888743 1 222233345666666666
Q ss_pred CCCCC-C-c-cccccccccceEeecccccc
Q 043541 116 SLHAP-C-G-INVALCKNLKEFKLFKISIT 142 (301)
Q Consensus 116 g~~~~-~-~-i~~~~c~~Lk~L~L~~~~It 142 (301)
|..-. . + --+...++|++|.+..|.+|
T Consensus 100 ~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 100 GNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CCccccccccchhhhhcchhhhhcccCCcc
Confidence 65411 1 0 01233444555555555444
No 39
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=89.03 E-value=0.16 Score=46.47 Aligned_cols=85 Identities=16% Similarity=0.198 Sum_probs=61.1
Q ss_pred cceeeeecceecccCccccCCCCCCCCCCCcEEEecccccC-hHHHHHHHhcCCcccEEeeecCCCce---EEE-cCCCC
Q 043541 12 CSSRLVLSKYIPQTYCKLDSHTRNVTLSSLRELGLFKCAAN-DEAIRDIVAGCPLIECLKIIDCRGLK---SLE-FLNLG 86 (301)
Q Consensus 12 ~~~~~~~~~~~~~~~C~l~~~~~~~~~~sLk~L~L~~c~i~-d~~L~~Lis~Cp~LE~L~L~~C~~l~---~L~-i~~~~ 86 (301)
|.+-..==++++..+|.+.+-.+.-.+|+||+|.+...... ..++.-++..||+|.+|+++.- +++ ++. +..++
T Consensus 38 l~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELE 116 (260)
T ss_pred ccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhc
Confidence 33333333677888888887556667899999999887432 3678889999999999999883 333 221 23357
Q ss_pred CccEEEEEeeC
Q 043541 87 KLSKFMVRNED 97 (301)
Q Consensus 87 ~Lk~L~i~~C~ 97 (301)
+|++|+..+|.
T Consensus 117 nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 117 NLKSLDLFNCS 127 (260)
T ss_pred chhhhhcccCC
Confidence 78899999886
No 40
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=88.79 E-value=0.53 Score=49.92 Aligned_cols=69 Identities=16% Similarity=0.241 Sum_probs=37.9
Q ss_pred CccEEEEEeeCCCceeEeecCceeEEEEcCCC-CCCccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 87 KLSKFMVRNEDRLARVSICGPNVRLVDISSLH-APCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 87 ~Lk~L~i~~C~~l~~i~i~ap~L~~f~~~g~~-~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
+|+.|+++++ .++.+....++|+.|+..+.. ..+. ....+|+.|++.++.++ .+..-+.+++.|+.|++
T Consensus 383 ~L~~LdLs~N-~Lt~LP~l~s~L~~LdLS~N~LssIP---~l~~~L~~L~Ls~NqLt--~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 383 GLKELIVSGN-RLTSLPVLPSELKELMVSGNRLTSLP---MLPSGLLSLSVYRNQLT--RLPESLIHLSSETTVNL 452 (788)
T ss_pred ccceEEecCC-cccCCCCcccCCCEEEccCCcCCCCC---cchhhhhhhhhccCccc--ccChHHhhccCCCeEEC
Confidence 5777777654 233333233567777776654 1111 12346777777777665 23333445666776665
No 41
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=88.45 E-value=0.62 Score=41.59 Aligned_cols=116 Identities=19% Similarity=0.306 Sum_probs=55.4
Q ss_pred cEEEecccccChHHHHHHHhcCCcccEEeeecCCCceE-EEcCCCCCccEEEEEeeCCCceeEe----ecCceeEEEEcC
Q 043541 42 RELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKS-LEFLNLGKLSKFMVRNEDRLARVSI----CGPNVRLVDISS 116 (301)
Q Consensus 42 k~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~-L~i~~~~~Lk~L~i~~C~~l~~i~i----~ap~L~~f~~~g 116 (301)
+.+.|++-++. .+.++-..--....++|.+- .+.. ..++.+++|+.|.+.+= .+.+|.= -.|+|.++.+.+
T Consensus 22 ~e~~LR~lkip--~ienlg~~~d~~d~iDLtdN-dl~~l~~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 22 RELDLRGLKIP--VIENLGATLDQFDAIDLTDN-DLRKLDNLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ccccccccccc--chhhccccccccceeccccc-chhhcccCCCccccceEEecCC-cceeeccchhhhccccceEEecC
Confidence 34445554441 22223333445566667663 3333 34566677888887742 3333321 246666666655
Q ss_pred CC-CC-Ccc-ccccccccceEeecccccchHHH--HHHhccCCCccEEEe
Q 043541 117 LH-AP-CGI-NVALCKNLKEFKLFKISITNEWL--CNQFSELPFLEYVEI 161 (301)
Q Consensus 117 ~~-~~-~~i-~~~~c~~Lk~L~L~~~~It~~~l--~~L~~~cp~LE~L~L 161 (301)
.. .. .++ .+.+|++|++|.+.++.+++..- +.++...|.|+.|+.
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF 147 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDF 147 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeeh
Confidence 43 00 111 23455566666665555554332 122344455555544
No 42
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=87.97 E-value=1.4 Score=46.59 Aligned_cols=54 Identities=13% Similarity=0.209 Sum_probs=30.6
Q ss_pred CCccEEEEEeeCCCceeEe-ecCceeEEEEcCCC-CCCccccccccccceEeecccccc
Q 043541 86 GKLSKFMVRNEDRLARVSI-CGPNVRLVDISSLH-APCGINVALCKNLKEFKLFKISIT 142 (301)
Q Consensus 86 ~~Lk~L~i~~C~~l~~i~i-~ap~L~~f~~~g~~-~~~~i~~~~c~~Lk~L~L~~~~It 142 (301)
++|+.|++.+|. ++.+.- -.++|+.++..++. ..+.. .-.++|+.|++.++.++
T Consensus 325 ~sL~~L~Ls~N~-Lt~LP~~l~~sL~~L~Ls~N~L~~LP~--~lp~~L~~LdLs~N~Lt 380 (754)
T PRK15370 325 PGLKTLEAGENA-LTSLPASLPPELQVLDVSKNQITVLPE--TLPPTITTLDVSRNALT 380 (754)
T ss_pred ccceeccccCCc-cccCChhhcCcccEEECCCCCCCcCCh--hhcCCcCEEECCCCcCC
Confidence 457777776653 222211 12578888777654 11111 12357899999888755
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=86.97 E-value=0.16 Score=47.91 Aligned_cols=120 Identities=17% Similarity=0.180 Sum_probs=62.8
Q ss_pred CCCCCcEEEecccccC--hHHHHHHHhcCCcccEEeeecCCCceEE-EcCCCCCccEEEEEeeC--CCceeEeecCceeE
Q 043541 37 TLSSLRELGLFKCAAN--DEAIRDIVAGCPLIECLKIIDCRGLKSL-EFLNLGKLSKFMVRNED--RLARVSICGPNVRL 111 (301)
Q Consensus 37 ~~~sLk~L~L~~c~i~--d~~L~~Lis~Cp~LE~L~L~~C~~l~~L-~i~~~~~Lk~L~i~~C~--~l~~i~i~ap~L~~ 111 (301)
.|..|..++|++..|+ |+++. =-|.++.|++++ .++... ++..+++|+.|++++-. .+.-....-.|+.+
T Consensus 282 TWq~LtelDLS~N~I~~iDESvK----L~Pkir~L~lS~-N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVK----LAPKLRRLILSQ-NRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKT 356 (490)
T ss_pred hHhhhhhccccccchhhhhhhhh----hccceeEEeccc-cceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEee
Confidence 3788888888888774 34443 347788888877 344332 23345777788777421 00000112234555
Q ss_pred EEEcCCCCCCccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 112 VDISSLHAPCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 112 f~~~g~~~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
+...+..-..-.+++..=+|..|+++++.|-.-.=..-+.+.|.||.+.+
T Consensus 357 L~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L 406 (490)
T KOG1259|consen 357 LKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRL 406 (490)
T ss_pred eehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhh
Confidence 55544431100123334456666666666543222223456666666655
No 44
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.90 E-value=0.58 Score=26.48 Aligned_cols=22 Identities=27% Similarity=0.209 Sum_probs=16.8
Q ss_pred ccccceEeecccccchHHHHHH
Q 043541 128 CKNLKEFKLFKISITNEWLCNQ 149 (301)
Q Consensus 128 c~~Lk~L~L~~~~It~~~l~~L 149 (301)
|++|++|+++++.|++++...+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 5789999999999999988765
No 45
>PRK15386 type III secretion protein GogB; Provisional
Probab=86.24 E-value=0.66 Score=45.61 Aligned_cols=58 Identities=16% Similarity=0.143 Sum_probs=25.4
Q ss_pred CCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEEcCCCCCccEEEEEeeCCCc
Q 043541 38 LSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLA 100 (301)
Q Consensus 38 ~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~i~~~~~Lk~L~i~~C~~l~ 100 (301)
|+.++.|++++|.+.. +. .--++|++|.+.+|..+..+.-.-.++|++|++++|..+.
T Consensus 51 ~~~l~~L~Is~c~L~s--LP---~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~ 108 (426)
T PRK15386 51 ARASGRLYIKDCDIES--LP---VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEIS 108 (426)
T ss_pred hcCCCEEEeCCCCCcc--cC---CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccc
Confidence 4555555555553321 11 1112355555555555433320001345555665554443
No 46
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=85.08 E-value=0.37 Score=51.32 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=24.8
Q ss_pred CCCCCCcEEEecccccC---hHHHHHHHhcCCcccEEeeec
Q 043541 36 VTLSSLRELGLFKCAAN---DEAIRDIVAGCPLIECLKIID 73 (301)
Q Consensus 36 ~~~~sLk~L~L~~c~i~---d~~L~~Lis~Cp~LE~L~L~~ 73 (301)
.+++.||.|+|.+..+. +..++.+ +.||+|.|++
T Consensus 380 ~~~~hLKVLhLsyNrL~~fpas~~~kl----e~LeeL~LSG 416 (1081)
T KOG0618|consen 380 VNFKHLKVLHLSYNRLNSFPASKLRKL----EELEELNLSG 416 (1081)
T ss_pred ccccceeeeeecccccccCCHHHHhch----HHhHHHhccc
Confidence 67889999999988653 3555444 4588888887
No 47
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=83.73 E-value=0.03 Score=57.26 Aligned_cols=40 Identities=20% Similarity=0.032 Sum_probs=23.6
Q ss_pred cceeeeecceecccCccccC---------CCCCCCCCCCcEEEeccccc
Q 043541 12 CSSRLVLSKYIPQTYCKLDS---------HTRNVTLSSLRELGLFKCAA 51 (301)
Q Consensus 12 ~~~~~~~~~~~~~~~C~l~~---------~~~~~~~~sLk~L~L~~c~i 51 (301)
=.|-||=+.|+++..-.|.. +....++..|++|.|++...
T Consensus 137 ~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 137 NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPL 185 (1255)
T ss_pred ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChh
Confidence 34566766666665554443 12234567788888877754
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.65 E-value=0.92 Score=42.89 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=25.0
Q ss_pred CCCCCcEEEecccccCh-HHHHHHHhcCCcccEEeeec
Q 043541 37 TLSSLRELGLFKCAAND-EAIRDIVAGCPLIECLKIID 73 (301)
Q Consensus 37 ~~~sLk~L~L~~c~i~d-~~L~~Lis~Cp~LE~L~L~~ 73 (301)
.+..+|.++|.+..++| +.+.++..+-|.|+.|+|+.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~ 106 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSC 106 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccC
Confidence 35566667777776666 66777777777777777654
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=79.71 E-value=0.52 Score=45.08 Aligned_cols=36 Identities=14% Similarity=0.184 Sum_probs=20.2
Q ss_pred CCCCcEEEecccccCh---HHHHHHHhcCCcccEEeeec
Q 043541 38 LSSLRELGLFKCAAND---EAIRDIVAGCPLIECLKIID 73 (301)
Q Consensus 38 ~~sLk~L~L~~c~i~d---~~L~~Lis~Cp~LE~L~L~~ 73 (301)
-+.||++.-.+...-+ ..+......+|.||++.+.+
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~q 194 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQ 194 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEec
Confidence 4556666655555433 44455555566666666655
No 50
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=79.66 E-value=0.14 Score=54.48 Aligned_cols=123 Identities=16% Similarity=0.205 Sum_probs=82.6
Q ss_pred CCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE---EcCCCCCccEEEEEeeCCCceeEe---ecC
Q 043541 34 RNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL---EFLNLGKLSKFMVRNEDRLARVSI---CGP 107 (301)
Q Consensus 34 ~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L---~i~~~~~Lk~L~i~~C~~l~~i~i---~ap 107 (301)
+...++.|+.|+|.+...+|+.+. ++.+.++|+-|+|++- .+..+ .+.+++.|+.|++++= .++.+.. .++
T Consensus 354 ~e~~~~~Lq~LylanN~Ltd~c~p-~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~ 430 (1081)
T KOG0618|consen 354 EENNHAALQELYLANNHLTDSCFP-VLVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLG 430 (1081)
T ss_pred cchhhHHHHHHHHhcCcccccchh-hhccccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhh
Confidence 445688899999999988875554 5678899999999883 23222 2233445555666532 2333332 456
Q ss_pred ceeEEEEcCCC-CCCccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 108 NVRLVDISSLH-APCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 108 ~L~~f~~~g~~-~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
.|+++.-++.. ..++ .+...+.|+.++++.++++.-.+...... |+||.|++
T Consensus 431 ~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdl 483 (1081)
T KOG0618|consen 431 RLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDL 483 (1081)
T ss_pred hhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeec
Confidence 67777666655 2233 56677889999999998887777666554 89999998
No 51
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=78.75 E-value=1.6 Score=34.38 Aligned_cols=11 Identities=18% Similarity=0.519 Sum_probs=3.7
Q ss_pred cCCcccEEeee
Q 043541 62 GCPLIECLKII 72 (301)
Q Consensus 62 ~Cp~LE~L~L~ 72 (301)
+|..|+.+.+.
T Consensus 10 ~~~~l~~i~~~ 20 (129)
T PF13306_consen 10 NCSNLESITFP 20 (129)
T ss_dssp T-TT--EEEET
T ss_pred CCCCCCEEEEC
Confidence 44445554443
No 52
>PLN03150 hypothetical protein; Provisional
Probab=77.75 E-value=2.6 Score=43.62 Aligned_cols=55 Identities=11% Similarity=0.126 Sum_probs=33.6
Q ss_pred cCceeEEEEcCCCC--CCccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 106 GPNVRLVDISSLHA--PCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 106 ap~L~~f~~~g~~~--~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
.++|+.++..+... .....++.+++|+.|+|+++.++.. +...+.++++|+.|++
T Consensus 441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNL 497 (623)
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEEC
Confidence 45666666665541 2233467777888888887776542 2233456777777776
No 53
>PLN03150 hypothetical protein; Provisional
Probab=76.26 E-value=2.4 Score=43.90 Aligned_cols=59 Identities=14% Similarity=0.077 Sum_probs=25.6
Q ss_pred CCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCC--ceEEEcCCCCCccEEEEEee
Q 043541 37 TLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRG--LKSLEFLNLGKLSKFMVRNE 96 (301)
Q Consensus 37 ~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~--l~~L~i~~~~~Lk~L~i~~C 96 (301)
++++|+.|+|.++.+.. .+..-+.+++.|+.|+|+++.- .---.+.++++|+.|+++++
T Consensus 440 ~L~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 440 KLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500 (623)
T ss_pred CCCCCCEEECCCCcccC-cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC
Confidence 35555555555554431 1222234455555555555421 10012233455555555543
No 54
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=75.38 E-value=2 Score=46.31 Aligned_cols=106 Identities=13% Similarity=0.107 Sum_probs=59.5
Q ss_pred CCCCCCCCcEEEeccccc-ChHHHHHHHhcCCcccEEeeecCCCceEE--EcCCCCCccEEEEEeeCCCceeEeecC---
Q 043541 34 RNVTLSSLRELGLFKCAA-NDEAIRDIVAGCPLIECLKIIDCRGLKSL--EFLNLGKLSKFMVRNEDRLARVSICGP--- 107 (301)
Q Consensus 34 ~~~~~~sLk~L~L~~c~i-~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L--~i~~~~~Lk~L~i~~C~~l~~i~i~ap--- 107 (301)
+..+++.|++|-+.+... ....-..+..+-|.|.-|+|++|..+..| .|+++-+|+.|+++.. ++.++...-.
T Consensus 540 ~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk 618 (889)
T KOG4658|consen 540 GSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLK 618 (889)
T ss_pred CCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHH
Confidence 445677788888777642 12233334556788888888887776655 4566777777777754 2333322222
Q ss_pred ceeEEEEcCCC--CCCccccccccccceEeecccc
Q 043541 108 NVRLVDISSLH--APCGINVALCKNLKEFKLFKIS 140 (301)
Q Consensus 108 ~L~~f~~~g~~--~~~~i~~~~c~~Lk~L~L~~~~ 140 (301)
.|.+++..... ....-......+|++|.+....
T Consensus 619 ~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 619 KLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hhheeccccccccccccchhhhcccccEEEeeccc
Confidence 23333333221 1111223447788888885543
No 55
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.34 E-value=0.37 Score=45.09 Aligned_cols=74 Identities=23% Similarity=0.258 Sum_probs=36.9
Q ss_pred CccEEEEEeeCCCceeEee--cCceeEEEEcCCCCCCccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 87 KLSKFMVRNEDRLARVSIC--GPNVRLVDISSLHAPCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 87 ~Lk~L~i~~C~~l~~i~i~--ap~L~~f~~~g~~~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
+.|+|+.++| ++.+|.|+ -|.||-+..+-..-..-..+..|.+|+.|+|..+.|.+-.=...+.+.|+|.+|-+
T Consensus 20 ~vkKLNcwg~-~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGC-GLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCC-CccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 3444444444 34455542 35555555443321111135667777777776666554222223455666666555
No 56
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=73.45 E-value=4.2 Score=24.02 Aligned_cols=23 Identities=39% Similarity=0.484 Sum_probs=20.1
Q ss_pred CCCcEEEecccccChHHHHHHHh
Q 043541 39 SSLRELGLFKCAANDEAIRDIVA 61 (301)
Q Consensus 39 ~sLk~L~L~~c~i~d~~L~~Lis 61 (301)
++|+.|+|+++.+.|++...|+.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 57999999999999988888765
No 57
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=72.47 E-value=4.7 Score=38.33 Aligned_cols=106 Identities=12% Similarity=0.214 Sum_probs=65.1
Q ss_pred HHHHHHHhcCCcccEEeeecCCC------c----eEEEcCCCCCccEEEEEeeC--CCceeEeecCceeEEEEcCCC---
Q 043541 54 EAIRDIVAGCPLIECLKIIDCRG------L----KSLEFLNLGKLSKFMVRNED--RLARVSICGPNVRLVDISSLH--- 118 (301)
Q Consensus 54 ~~L~~Lis~Cp~LE~L~L~~C~~------l----~~L~i~~~~~Lk~L~i~~C~--~l~~i~i~ap~L~~f~~~g~~--- 118 (301)
-.+.+++..|..|..|....-.+ + -.++++..++|+.++++.|+ ++.++..--|-|+++..+...
T Consensus 172 ~d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~ 251 (490)
T KOG1259|consen 172 YDFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQD 251 (490)
T ss_pred cchHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccc
Confidence 45666777777888888776553 1 12234445789999999887 677777667888887654322
Q ss_pred ----CC------------------CccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 119 ----AP------------------CGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 119 ----~~------------------~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
.| ....+...+-|+.++|+++.|+. +..-..-.|.++.|++
T Consensus 252 ~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~--iDESvKL~Pkir~L~l 314 (490)
T KOG1259|consen 252 VPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQ--IDESVKLAPKLRRLIL 314 (490)
T ss_pred cccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhh--hhhhhhhccceeEEec
Confidence 00 11123345678888888887763 2222222466777766
No 58
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=71.17 E-value=0.43 Score=49.86 Aligned_cols=100 Identities=16% Similarity=0.146 Sum_probs=44.9
Q ss_pred CCCCcEEEeccccc--ChHHHHHHHhcCCcccEEeeecCCCceEEEcCCCCCccEEEEEe-eC-CCceeEeecCceeEEE
Q 043541 38 LSSLRELGLFKCAA--NDEAIRDIVAGCPLIECLKIIDCRGLKSLEFLNLGKLSKFMVRN-ED-RLARVSICGPNVRLVD 113 (301)
Q Consensus 38 ~~sLk~L~L~~c~i--~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~i~~~~~Lk~L~i~~-C~-~l~~i~i~ap~L~~f~ 113 (301)
|-.|.+-+...... .|++++-+ |.+|+|+|++-+-.+.-.+.-|++||+|+++. |- .+-.+...+-.|+.+.
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll----~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~ 238 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLL----PALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLN 238 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHH----HHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeee
Confidence 44444444444332 24555543 44777777652211111222356777777762 31 2223332222355555
Q ss_pred EcCCCCCCccccccccccceEeeccccc
Q 043541 114 ISSLHAPCGINVALCKNLKEFKLFKISI 141 (301)
Q Consensus 114 ~~g~~~~~~i~~~~c~~Lk~L~L~~~~I 141 (301)
++++....--++...++|..|+++++.+
T Consensus 239 lrnN~l~tL~gie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 239 LRNNALTTLRGIENLKSLYGLDLSYNLL 266 (1096)
T ss_pred ecccHHHhhhhHHhhhhhhccchhHhhh
Confidence 5554311112344555556666655443
No 59
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=65.72 E-value=4.5 Score=21.12 Aligned_cols=12 Identities=33% Similarity=0.335 Sum_probs=5.4
Q ss_pred CCcEEEeccccc
Q 043541 40 SLRELGLFKCAA 51 (301)
Q Consensus 40 sLk~L~L~~c~i 51 (301)
+||.|+|++|.+
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 456666666543
No 60
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=64.97 E-value=1.1 Score=39.25 Aligned_cols=56 Identities=20% Similarity=0.235 Sum_probs=39.6
Q ss_pred CCCCCCCCcEEEecccccCh--HHHHHHHhcCCcccEEeeecCCCceEE--EcCCCCCccEEEEE
Q 043541 34 RNVTLSSLRELGLFKCAAND--EAIRDIVAGCPLIECLKIIDCRGLKSL--EFLNLGKLSKFMVR 94 (301)
Q Consensus 34 ~~~~~~sLk~L~L~~c~i~d--~~L~~Lis~Cp~LE~L~L~~C~~l~~L--~i~~~~~Lk~L~i~ 94 (301)
+..++.....|.|++.+++. ..+.+|. +||.|++.+ ..++.| .++++++|+.|++.
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~----nlevln~~n-nqie~lp~~issl~klr~lnvg 87 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELK----NLEVLNLSN-NQIEELPTSISSLPKLRILNVG 87 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhh----hhhhhhccc-chhhhcChhhhhchhhhheecc
Confidence 55677888888998887642 4544443 488888876 345544 56788999998886
No 61
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=64.72 E-value=13 Score=25.09 Aligned_cols=36 Identities=11% Similarity=0.023 Sum_probs=26.9
Q ss_pred ccceEEEEEecccCccchhhHHHHHhccCCCccEEEEE
Q 043541 246 YENHVCLAVDSEYNTFSFAKLVDSLLWISPHAETLSIK 283 (301)
Q Consensus 246 ~lkhL~l~~~~~~~~~~~~~l~~~lL~~~P~letl~l~ 283 (301)
+||.+.++- +.+.+ +-.+++.++|+.||.||++.|+
T Consensus 15 ~Lk~v~~~~-f~g~~-~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 15 HLKFVEIKG-FRGEE-NELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred eeEEEEEEe-eeCcH-HHHHHHHHHHhhhhhhcEEEEE
Confidence 677777753 34433 3466788999999999999986
No 62
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=63.35 E-value=2.8 Score=40.80 Aligned_cols=119 Identities=19% Similarity=0.196 Sum_probs=54.7
Q ss_pred CCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE-E-cCCCCCccEEEEEeeCCCceeE-e-ecCceeEEE
Q 043541 38 LSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL-E-FLNLGKLSKFMVRNEDRLARVS-I-CGPNVRLVD 113 (301)
Q Consensus 38 ~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L-~-i~~~~~Lk~L~i~~C~~l~~i~-i-~ap~L~~f~ 113 (301)
+..++.++++...+.. +.+-+.....|+.|++.+ ..++.+ . +.++++|+.|++++= .++++. + ..+.|+.+.
T Consensus 71 l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSFN-KITKLEGLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhh--hhcccccccceeeeeccc-cchhhcccchhhhhcchheecccc-ccccccchhhccchhhhe
Confidence 4445555554444322 122233445566666655 233222 2 344566666666532 222222 1 234466666
Q ss_pred EcCCCCCCccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 114 ISSLHAPCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 114 ~~g~~~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
..|..-.-.-.+..+.+|+.+++.++.|++-.-.. ...+..++.+.+
T Consensus 147 l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l 193 (414)
T KOG0531|consen 147 LSGNLISDISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDL 193 (414)
T ss_pred eccCcchhccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhc
Confidence 65554111112344666777777776655432211 344555555554
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=62.59 E-value=8.3 Score=34.56 Aligned_cols=79 Identities=15% Similarity=0.198 Sum_probs=51.6
Q ss_pred CCCCCCcEEEecccccCh--HHHHHHHhcCCcccEEeeecCCCceE---E-EcCCCCCccEEEEEeeC-----CCceeEe
Q 043541 36 VTLSSLRELGLFKCAAND--EAIRDIVAGCPLIECLKIIDCRGLKS---L-EFLNLGKLSKFMVRNED-----RLARVSI 104 (301)
Q Consensus 36 ~~~~sLk~L~L~~c~i~d--~~L~~Lis~Cp~LE~L~L~~C~~l~~---L-~i~~~~~Lk~L~i~~C~-----~l~~i~i 104 (301)
-.++.|.+|.|.+..|++ ..+..+ .|+|..|.|.+- .++. + .+.+||+|+.|.+-+-. +-+.-.+
T Consensus 61 p~l~rL~tLll~nNrIt~I~p~L~~~---~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl 136 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRITRIDPDLDTF---LPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVL 136 (233)
T ss_pred CCccccceEEecCCcceeeccchhhh---ccccceEEecCc-chhhhhhcchhccCCccceeeecCCchhcccCceeEEE
Confidence 457889999999998864 665555 467778888762 2222 1 24568899988876422 2222223
Q ss_pred -ecCceeEEEEcCCC
Q 043541 105 -CGPNVRLVDISSLH 118 (301)
Q Consensus 105 -~ap~L~~f~~~g~~ 118 (301)
..|+|+.|++.+-.
T Consensus 137 ~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 137 YKLPSLRTLDFQKVT 151 (233)
T ss_pred EecCcceEeehhhhh
Confidence 57999999987644
No 64
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.73 E-value=6 Score=37.57 Aligned_cols=147 Identities=16% Similarity=0.067 Sum_probs=84.9
Q ss_pred eeeeecceecccCccccCC--CCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEEcC------CC
Q 043541 14 SRLVLSKYIPQTYCKLDSH--TRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLEFL------NL 85 (301)
Q Consensus 14 ~~~~~~~~~~~~~C~l~~~--~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~i~------~~ 85 (301)
|-||-=.+++++.=.+.++ +.+.-..+||+|.|.|-...-...+++...-|.+.+|.++. .+++.+.+. --
T Consensus 94 e~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~-N~~rq~n~Dd~c~e~~s 172 (418)
T KOG2982|consen 94 EQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSD-NSLRQLNLDDNCIEDWS 172 (418)
T ss_pred hcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhcc-chhhhhccccccccccc
Confidence 4556556666654444331 12234668888888888765577788888888888887766 233333221 01
Q ss_pred CCccEEEEEeeC-----CCceeEeecCceeEEEEcCCC-CC--CccccccccccceEeecccccchHHHHHHhccCCCcc
Q 043541 86 GKLSKFMVRNED-----RLARVSICGPNVRLVDISSLH-AP--CGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLE 157 (301)
Q Consensus 86 ~~Lk~L~i~~C~-----~l~~i~i~ap~L~~f~~~g~~-~~--~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE 157 (301)
+.+++++...|. ++.++..-.||+.++-.|.+. .. -.-.+.-.+.+.-|+|...+|.+=+-...+.++|.|.
T Consensus 173 ~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~ 252 (418)
T KOG2982|consen 173 TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLV 252 (418)
T ss_pred hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhh
Confidence 567777777774 333444457888877666553 11 1112334455555666666665544444455666665
Q ss_pred EEEe
Q 043541 158 YVEI 161 (301)
Q Consensus 158 ~L~L 161 (301)
.|.+
T Consensus 253 dlRv 256 (418)
T KOG2982|consen 253 DLRV 256 (418)
T ss_pred eeec
Confidence 5544
No 65
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=57.05 E-value=2.5 Score=40.44 Aligned_cols=78 Identities=23% Similarity=0.273 Sum_probs=35.0
Q ss_pred CCCCcEEEecccccChHHHHHHHhcC-CcccEEeeecCCCceEE--EcCCCCCccEEEEEeeC--CCceeEeecCceeEE
Q 043541 38 LSSLRELGLFKCAANDEAIRDIVAGC-PLIECLKIIDCRGLKSL--EFLNLGKLSKFMVRNED--RLARVSICGPNVRLV 112 (301)
Q Consensus 38 ~~sLk~L~L~~c~i~d~~L~~Lis~C-p~LE~L~L~~C~~l~~L--~i~~~~~Lk~L~i~~C~--~l~~i~i~ap~L~~f 112 (301)
.+.++.|.+.+..+++ +......- ++|+.|++++ ..++.+ .+..+++|+.|++..+. .+.......++|+.+
T Consensus 115 ~~~l~~L~l~~n~i~~--i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 115 LTNLTSLDLDNNNITD--IPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred ccceeEEecCCccccc--Cccccccchhhcccccccc-cchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 3455666666655543 11111112 3455555555 234444 34445566666665543 111111144555555
Q ss_pred EEcCCC
Q 043541 113 DISSLH 118 (301)
Q Consensus 113 ~~~g~~ 118 (301)
...+..
T Consensus 192 ~ls~N~ 197 (394)
T COG4886 192 DLSGNK 197 (394)
T ss_pred eccCCc
Confidence 554443
No 66
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=56.94 E-value=3.2 Score=43.09 Aligned_cols=101 Identities=19% Similarity=0.238 Sum_probs=62.1
Q ss_pred CCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE--EcCCCCCccEEEEEeeCCCceeEe-----ecCc
Q 043541 36 VTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL--EFLNLGKLSKFMVRNEDRLARVSI-----CGPN 108 (301)
Q Consensus 36 ~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L--~i~~~~~Lk~L~i~~C~~l~~i~i-----~ap~ 108 (301)
..+.+++.|.|..-... .+..=++.|..||+|++.+ ..+.++ .++.+|.|+++.++.- ++++-.| .-..
T Consensus 29 ~qMt~~~WLkLnrt~L~--~vPeEL~~lqkLEHLs~~H-N~L~~vhGELs~Lp~LRsv~~R~N-~LKnsGiP~diF~l~d 104 (1255)
T KOG0444|consen 29 EQMTQMTWLKLNRTKLE--QVPEELSRLQKLEHLSMAH-NQLISVHGELSDLPRLRSVIVRDN-NLKNSGIPTDIFRLKD 104 (1255)
T ss_pred HHhhheeEEEechhhhh--hChHHHHHHhhhhhhhhhh-hhhHhhhhhhccchhhHHHhhhcc-ccccCCCCchhccccc
Confidence 34778999999887653 3333445677899999987 344433 2455677877777642 2222111 2234
Q ss_pred eeEEEEcCCC-CCCccccccccccceEeecccc
Q 043541 109 VRLVDISSLH-APCGINVALCKNLKEFKLFKIS 140 (301)
Q Consensus 109 L~~f~~~g~~-~~~~i~~~~c~~Lk~L~L~~~~ 140 (301)
|..++.+... ..+.-++...+++-.|+|++++
T Consensus 105 Lt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~ 137 (1255)
T KOG0444|consen 105 LTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN 137 (1255)
T ss_pred ceeeecchhhhhhcchhhhhhcCcEEEEcccCc
Confidence 5566665554 3344466777888888888775
No 67
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=56.55 E-value=6.9 Score=37.39 Aligned_cols=116 Identities=18% Similarity=0.208 Sum_probs=62.1
Q ss_pred CCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEEcC--CCCCccEEEEEeeCCCceeEe--ecCc-eeEEEE
Q 043541 40 SLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLEFL--NLGKLSKFMVRNEDRLARVSI--CGPN-VRLVDI 114 (301)
Q Consensus 40 sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~i~--~~~~Lk~L~i~~C~~l~~i~i--~ap~-L~~f~~ 114 (301)
+|+.|++.+..+.+ +..-+..+|.|+.|+++++. +..+.-. ..++|+.|++++- .++++.- ..++ |+++..
T Consensus 141 nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~ 216 (394)
T COG4886 141 NLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDL 216 (394)
T ss_pred hcccccccccchhh--hhhhhhccccccccccCCch-hhhhhhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhh
Confidence 78888888886643 22346688999999998864 3222111 3466777777753 2333322 2333 666666
Q ss_pred cCCC-CCCccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 115 SSLH-APCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 115 ~g~~-~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
.+.. ......+....++..+.+.++.+.+. .....+.++++.|++
T Consensus 217 ~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~--~~~~~~l~~l~~L~~ 262 (394)
T COG4886 217 SNNSIIELLSSLSNLKNLSGLELSNNKLEDL--PESIGNLSNLETLDL 262 (394)
T ss_pred cCCcceecchhhhhcccccccccCCceeeec--cchhccccccceecc
Confidence 5552 12222344455555555444443321 223344555666665
No 68
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=37.22 E-value=66 Score=22.86 Aligned_cols=39 Identities=18% Similarity=0.049 Sum_probs=28.9
Q ss_pred ccceEEEEEecccCccchhhHHHHHhccCCCccEEEEEecC
Q 043541 246 YENHVCLAVDSEYNTFSFAKLVDSLLWISPHAETLSIKYND 286 (301)
Q Consensus 246 ~lkhL~l~~~~~~~~~~~~~l~~~lL~~~P~letl~l~~~~ 286 (301)
+||.+++.= +.-...-.+++.++|+.+|.||++.+...+
T Consensus 6 ~Lk~v~i~~--f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~ 44 (72)
T smart00579 6 SLEVLEIKG--YRGTEEEKELVKYFLENAPCLKKLTISVET 44 (72)
T ss_pred eEEEEEEEe--ccCcHHHHHHHHHHHhcchhheEEEEEeec
Confidence 466677753 333335567788999999999999998874
No 69
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=35.50 E-value=1.4 Score=43.25 Aligned_cols=104 Identities=16% Similarity=0.189 Sum_probs=0.0
Q ss_pred CCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE-EcCCCCCccEEEEEeeC---CCceeEeecCceeE
Q 043541 36 VTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL-EFLNLGKLSKFMVRNED---RLARVSICGPNVRL 111 (301)
Q Consensus 36 ~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L-~i~~~~~Lk~L~i~~C~---~l~~i~i~ap~L~~ 111 (301)
++|++|++|+...... ..+..=+.+-..||-|.|.+ .++..+ .+.||..|+.++++.-. --.+.--+-+++-.
T Consensus 180 i~m~~L~~ld~~~N~L--~tlP~~lg~l~~L~~LyL~~-Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~v 256 (565)
T KOG0472|consen 180 IAMKRLKHLDCNSNLL--ETLPPELGGLESLELLYLRR-NKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLV 256 (565)
T ss_pred HHHHHHHhcccchhhh--hcCChhhcchhhhHHHHhhh-cccccCCCCCccHHHHHHHhcccHHHhhHHHHhccccccee
Q ss_pred EEEcCCC-CCCccccccccccceEeecccccc
Q 043541 112 VDISSLH-APCGINVALCKNLKEFKLFKISIT 142 (301)
Q Consensus 112 f~~~g~~-~~~~i~~~~c~~Lk~L~L~~~~It 142 (301)
++.+... ..+...+.-.++|.+|+++.++|+
T Consensus 257 LDLRdNklke~Pde~clLrsL~rLDlSNN~is 288 (565)
T KOG0472|consen 257 LDLRDNKLKEVPDEICLLRSLERLDLSNNDIS 288 (565)
T ss_pred eeccccccccCchHHHHhhhhhhhcccCCccc
No 70
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=34.21 E-value=15 Score=39.82 Aligned_cols=66 Identities=20% Similarity=0.444 Sum_probs=45.5
Q ss_pred CCCCCCcEEEecccccChHHH---HHHHh--cCCcccEEeeecCCCceEEE--cCCCCCccEEEEEeeCCCcee
Q 043541 36 VTLSSLRELGLFKCAANDEAI---RDIVA--GCPLIECLKIIDCRGLKSLE--FLNLGKLSKFMVRNEDRLARV 102 (301)
Q Consensus 36 ~~~~sLk~L~L~~c~i~d~~L---~~Lis--~Cp~LE~L~L~~C~~l~~L~--i~~~~~Lk~L~i~~C~~l~~i 102 (301)
..+++|+.|.+.+|.+.+..+ ..... ++|++-.+.+.+|.+++.+. ... ++|+++.+..|..++++
T Consensus 714 ~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~-~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 714 GSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFA-PHLTSLSLVSCRLLEDI 786 (889)
T ss_pred ccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhcc-CcccEEEEecccccccC
Confidence 558999999999998764211 11111 46777788888888776654 332 78999999998765553
No 71
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=33.87 E-value=35 Score=30.99 Aligned_cols=54 Identities=20% Similarity=0.340 Sum_probs=40.0
Q ss_pred ceecccCccccCCCCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCC
Q 043541 20 KYIPQTYCKLDSHTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCR 75 (301)
Q Consensus 20 ~~~~~~~C~l~~~~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~ 75 (301)
+|-+++.|.+.- ...+|.+|+.=++++-...-..++..---|.++|-=.|..|.
T Consensus 154 kyA~ls~c~lsh--tNL~ca~lerADl~gsil~cA~L~~v~~lcaN~eGA~L~gcN 207 (302)
T KOG1665|consen 154 KYANLSNCNLSH--TNLQCAKLERADLEGSILHCAILREVEMLCANAEGASLKGCN 207 (302)
T ss_pred eehhhccccccc--cchhhhhhcccccccchhhhhhhhhhhheecccccccccCcC
Confidence 588889998873 455688888888887655446666666678888888888875
No 72
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=30.85 E-value=17 Score=38.57 Aligned_cols=98 Identities=16% Similarity=0.101 Sum_probs=58.7
Q ss_pred CCCCcEEEecccccChHHHHHHHhcCCcccEEeeecC--CCceEEEcCCCCCccEEEEEeeC--CCceeEeecCceeEEE
Q 043541 38 LSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDC--RGLKSLEFLNLGKLSKFMVRNED--RLARVSICGPNVRLVD 113 (301)
Q Consensus 38 ~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C--~~l~~L~i~~~~~Lk~L~i~~C~--~l~~i~i~ap~L~~f~ 113 (301)
+|.|+.|+|++.++++ ++ .+..||.|.+|||++- +.+-.+...||. |+.|.+++-. .+..|+ +-.+|+.++
T Consensus 186 l~ale~LnLshNk~~~--v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~gie-~LksL~~LD 260 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTK--VD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLRGIE-NLKSLYGLD 260 (1096)
T ss_pred HHHhhhhccchhhhhh--hH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhhhHH-hhhhhhccc
Confidence 6779999999998865 33 4568999999999872 123455666765 8888887532 111111 123455554
Q ss_pred EcCCC-CCC-c-cccccccccceEeecccc
Q 043541 114 ISSLH-APC-G-INVALCKNLKEFKLFKIS 140 (301)
Q Consensus 114 ~~g~~-~~~-~-i~~~~c~~Lk~L~L~~~~ 140 (301)
.+.+. ... . .-++...+|+.|.|.++.
T Consensus 261 lsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 261 LSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 43332 000 0 014556677888887765
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=29.39 E-value=33 Score=18.79 Aligned_cols=13 Identities=31% Similarity=0.317 Sum_probs=8.4
Q ss_pred ccceEeecccccc
Q 043541 130 NLKEFKLFKISIT 142 (301)
Q Consensus 130 ~Lk~L~L~~~~It 142 (301)
+|+.|++++|.++
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 4667777776654
No 74
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=26.05 E-value=11 Score=33.20 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=15.9
Q ss_pred ccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 124 NVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 124 ~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
.+.+.++|+.|++..+.+. .+...+..+|.||.|++
T Consensus 74 ~issl~klr~lnvgmnrl~--~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 74 SISSLPKLRILNVGMNRLN--ILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhchhhhheecchhhhh--cCccccCCCchhhhhhc
Confidence 3445555555555433210 11222445566665555
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=21.20 E-value=69 Score=17.90 Aligned_cols=14 Identities=36% Similarity=0.415 Sum_probs=9.6
Q ss_pred CCCcEEEecccccC
Q 043541 39 SSLRELGLFKCAAN 52 (301)
Q Consensus 39 ~sLk~L~L~~c~i~ 52 (301)
++|+.|+|.++.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 56777777777654
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=21.20 E-value=69 Score=17.90 Aligned_cols=14 Identities=36% Similarity=0.415 Sum_probs=9.6
Q ss_pred CCCcEEEecccccC
Q 043541 39 SSLRELGLFKCAAN 52 (301)
Q Consensus 39 ~sLk~L~L~~c~i~ 52 (301)
++|+.|+|.++.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 56777777777654
No 77
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=20.82 E-value=30 Score=33.66 Aligned_cols=100 Identities=19% Similarity=0.219 Sum_probs=48.0
Q ss_pred CCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE-EcCCCCCccEEEEEeeCCCceeEe--ecCceeEEE
Q 043541 37 TLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL-EFLNLGKLSKFMVRNEDRLARVSI--CGPNVRLVD 113 (301)
Q Consensus 37 ~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L-~i~~~~~Lk~L~i~~C~~l~~i~i--~ap~L~~f~ 113 (301)
.+.+|..|+|.+..+ ..+.+.+.++++|+.|++++ ..+..+ .+..++.|+.|++.+.. ++++.- ..++|+.++
T Consensus 93 ~~~~l~~l~l~~n~i--~~i~~~l~~~~~L~~L~ls~-N~I~~i~~l~~l~~L~~L~l~~N~-i~~~~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKI--EKIENLLSSLVNLQVLDLSF-NKITKLEGLSTLTLLKELNLSGNL-ISDISGLESLKSLKLLD 168 (414)
T ss_pred cccceeeeeccccch--hhcccchhhhhcchheeccc-cccccccchhhccchhhheeccCc-chhccCCccchhhhccc
Confidence 466677777776665 33344356677777777766 222222 12223446666665432 112111 134444444
Q ss_pred EcCCCC-CCccc-cccccccceEeecccc
Q 043541 114 ISSLHA-PCGIN-VALCKNLKEFKLFKIS 140 (301)
Q Consensus 114 ~~g~~~-~~~i~-~~~c~~Lk~L~L~~~~ 140 (301)
+.+..- ...-. ...+.+++.+.+..+.
T Consensus 169 l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 169 LSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred CCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 444331 11100 2455566666665554
Done!