Query 043541
Match_columns 301
No_of_seqs 227 out of 757
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 10:02:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043541.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043541hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ast_B S-phase kinase-associat 99.0 2.5E-10 8.5E-15 104.7 7.0 140 21-161 74-229 (336)
2 2p1m_B Transport inhibitor res 98.9 4.6E-09 1.6E-13 103.3 9.4 36 127-162 287-322 (594)
3 4fmz_A Internalin; leucine ric 98.8 3.4E-08 1.1E-12 90.9 12.1 133 20-161 47-184 (347)
4 2ast_B S-phase kinase-associat 98.8 1.4E-09 4.6E-14 99.7 2.6 143 17-161 93-254 (336)
5 3e4g_A ATP synthase subunit S, 98.8 1.3E-09 4.5E-14 93.2 1.0 103 36-157 58-170 (176)
6 2p1m_B Transport inhibitor res 98.7 1.3E-08 4.3E-13 100.2 7.9 122 37-161 312-463 (594)
7 3ogk_B Coronatine-insensitive 98.7 2.7E-08 9.2E-13 97.9 9.1 76 85-161 377-470 (592)
8 4fcg_A Uncharacterized protein 98.7 2.1E-08 7.3E-13 92.7 7.8 137 20-161 84-236 (328)
9 4fmz_A Internalin; leucine ric 98.6 1.3E-07 4.4E-12 86.9 10.3 142 13-161 62-206 (347)
10 3bz5_A Internalin-J, INLJ; leu 98.6 5.8E-08 2E-12 94.1 6.8 77 14-96 61-137 (457)
11 3ogk_B Coronatine-insensitive 98.6 4.3E-08 1.5E-12 96.4 5.6 125 36-161 339-495 (592)
12 1h6u_A Internalin H; cell adhe 98.6 3.9E-07 1.3E-11 83.3 11.3 133 20-161 44-180 (308)
13 3bz5_A Internalin-J, INLJ; leu 98.5 2.5E-07 8.6E-12 89.6 9.1 113 20-139 45-158 (457)
14 3e4g_A ATP synthase subunit S, 98.5 7.1E-08 2.4E-12 82.5 4.2 83 20-103 64-156 (176)
15 3v47_A TOLL-like receptor 5B a 98.5 1.6E-07 5.4E-12 89.4 6.8 121 20-142 33-167 (455)
16 4fcg_A Uncharacterized protein 98.5 2.7E-07 9.1E-12 85.3 7.5 142 16-161 103-260 (328)
17 1h6t_A Internalin B; cell adhe 98.4 9.5E-07 3.2E-11 80.2 10.6 133 20-161 49-185 (291)
18 2z66_A Variable lymphocyte rec 98.4 2.4E-07 8.2E-12 83.8 5.5 141 20-161 31-182 (306)
19 2id5_A Lingo-1, leucine rich r 98.4 2.2E-07 7.5E-12 89.4 5.4 255 20-285 35-330 (477)
20 4ezg_A Putative uncharacterize 98.4 4.9E-07 1.7E-11 77.0 6.8 117 36-161 41-166 (197)
21 2ell_A Acidic leucine-rich nuc 98.4 1.8E-07 6.2E-12 77.4 3.9 124 37-161 22-154 (168)
22 1o6v_A Internalin A; bacterial 98.3 2.6E-06 8.8E-11 82.0 11.8 77 17-97 68-145 (466)
23 2je0_A Acidic leucine-rich nuc 98.3 8.6E-08 2.9E-12 77.8 0.6 124 37-161 15-147 (149)
24 2z63_A TOLL-like receptor 4, v 98.3 3.2E-07 1.1E-11 89.6 4.7 185 20-212 307-525 (570)
25 1m9s_A Internalin B; cell inva 98.3 1.6E-06 5.5E-11 87.1 9.8 133 20-161 46-182 (605)
26 3zyi_A Leucine-rich repeat-con 98.3 1.3E-06 4.4E-11 83.7 8.4 136 20-161 78-225 (452)
27 3t6q_A CD180 antigen; protein- 98.3 4.8E-07 1.6E-11 89.4 5.3 137 21-161 258-407 (606)
28 1h6u_A Internalin H; cell adhe 98.3 1.8E-06 6.1E-11 78.9 8.6 139 14-161 60-202 (308)
29 2z80_A TOLL-like receptor 2, v 98.3 5.6E-06 1.9E-10 76.5 11.6 122 37-161 98-229 (353)
30 1xeu_A Internalin C; cellular 98.3 2.2E-06 7.6E-11 76.6 8.6 116 37-161 39-157 (263)
31 2xwt_C Thyrotropin receptor; s 98.3 2.1E-06 7.3E-11 74.9 8.1 121 38-161 30-163 (239)
32 4ezg_A Putative uncharacterize 98.2 6.4E-07 2.2E-11 76.3 4.5 133 20-161 47-188 (197)
33 3rgz_A Protein brassinosteroid 98.2 7.6E-07 2.6E-11 91.3 5.4 77 84-161 176-254 (768)
34 3o53_A Protein LRIM1, AGAP0063 98.2 3E-06 1E-10 77.4 8.9 117 37-161 56-176 (317)
35 3zyj_A Leucine-rich repeat-con 98.2 1.7E-06 5.7E-11 82.7 7.3 136 20-161 67-214 (440)
36 1o6v_A Internalin A; bacterial 98.2 3.6E-06 1.2E-10 80.9 9.6 135 19-161 201-338 (466)
37 1ozn_A Reticulon 4 receptor; N 98.2 9.8E-07 3.4E-11 79.1 5.1 121 38-161 31-160 (285)
38 3vq2_A TLR4, TOLL-like recepto 98.2 1.2E-06 4.1E-11 86.5 5.7 136 21-161 289-431 (606)
39 3rfs_A Internalin B, repeat mo 98.2 1.6E-06 5.5E-11 77.5 5.9 116 22-142 46-170 (272)
40 3rfs_A Internalin B, repeat mo 98.2 1.1E-06 3.8E-11 78.5 4.5 144 14-161 60-212 (272)
41 3o53_A Protein LRIM1, AGAP0063 98.1 7E-07 2.4E-11 81.7 2.8 36 125-160 233-268 (317)
42 1h6t_A Internalin B; cell adhe 98.1 5.2E-06 1.8E-10 75.2 8.3 139 15-161 66-207 (291)
43 3oja_A Leucine-rich immune mol 98.1 8.5E-06 2.9E-10 79.3 10.3 134 20-161 37-176 (487)
44 3o6n_A APL1; leucine-rich repe 98.1 8E-06 2.7E-10 76.4 9.6 140 14-161 114-255 (390)
45 2z63_A TOLL-like receptor 4, v 98.1 5.8E-06 2E-10 80.6 8.9 187 20-212 285-501 (570)
46 2z7x_B TOLL-like receptor 1, v 98.1 8E-06 2.7E-10 79.1 9.8 136 21-161 306-451 (520)
47 1a9n_A U2A', U2A'; complex (nu 98.1 5E-06 1.7E-10 69.4 6.8 123 35-161 15-147 (176)
48 3vq2_A TLR4, TOLL-like recepto 98.1 1.1E-06 3.7E-11 86.8 2.7 135 20-161 310-455 (606)
49 1z7x_W Ribonuclease inhibitor; 98.1 3.1E-06 1.1E-10 80.4 5.6 123 37-161 111-263 (461)
50 1z7x_W Ribonuclease inhibitor; 98.1 3.6E-06 1.2E-10 80.0 5.9 75 86-161 313-405 (461)
51 3v47_A TOLL-like receptor 5B a 98.1 3.9E-06 1.3E-10 79.7 6.1 197 14-212 100-402 (455)
52 2z62_A TOLL-like receptor 4, v 98.1 6.4E-06 2.2E-10 73.3 7.1 120 39-161 28-156 (276)
53 2z81_A CD282 antigen, TOLL-lik 98.1 1.5E-05 5.1E-10 77.6 10.3 135 20-161 337-480 (549)
54 2xwt_C Thyrotropin receptor; s 98.1 3.9E-06 1.3E-10 73.3 5.5 121 20-142 34-169 (239)
55 2ca6_A RAN GTPase-activating p 98.0 6E-06 2E-10 77.2 6.9 123 38-161 31-194 (386)
56 1ozn_A Reticulon 4 receptor; N 98.0 6.1E-06 2.1E-10 73.8 6.6 144 14-161 53-208 (285)
57 3o6n_A APL1; leucine-rich repe 98.0 5.6E-06 1.9E-10 77.5 6.5 34 126-161 292-325 (390)
58 2ca6_A RAN GTPase-activating p 98.0 1.5E-05 5E-10 74.6 9.3 124 37-161 92-251 (386)
59 1m9s_A Internalin B; cell inva 98.0 5.6E-06 1.9E-10 83.2 6.6 141 13-161 61-204 (605)
60 3t6q_A CD180 antigen; protein- 98.0 5.1E-06 1.7E-10 82.0 6.2 145 15-161 276-432 (606)
61 2ra8_A Uncharacterized protein 98.0 4.5E-06 1.5E-10 78.8 5.5 124 37-161 137-286 (362)
62 2id5_A Lingo-1, leucine rich r 98.0 5.1E-06 1.7E-10 79.7 5.9 76 19-96 106-186 (477)
63 1xeu_A Internalin C; cellular 98.0 7.2E-06 2.5E-10 73.3 5.8 131 20-161 44-179 (263)
64 2z80_A TOLL-like receptor 2, v 98.0 3.6E-06 1.2E-10 77.8 3.5 124 19-143 102-236 (353)
65 4glp_A Monocyte differentiatio 98.0 2.5E-06 8.6E-11 77.6 2.5 125 37-161 62-204 (310)
66 3oja_B Anopheles plasmodium-re 98.0 2.3E-05 7.8E-10 77.9 9.5 195 14-212 120-352 (597)
67 3zyi_A Leucine-rich repeat-con 97.9 7.5E-06 2.6E-10 78.4 5.8 145 14-161 96-249 (452)
68 3zyj_A Leucine-rich repeat-con 97.9 6.9E-06 2.4E-10 78.4 5.4 144 15-161 86-238 (440)
69 3j0a_A TOLL-like receptor 5; m 97.9 3.8E-05 1.3E-09 79.5 10.6 122 21-143 28-162 (844)
70 1wwl_A Monocyte differentiatio 97.9 6.1E-06 2.1E-10 75.2 4.0 159 37-198 93-286 (312)
71 3g06_A SSPH2 (leucine-rich rep 97.9 6.5E-05 2.2E-09 75.7 11.9 31 39-74 61-91 (622)
72 3rgz_A Protein brassinosteroid 97.9 1.5E-05 5.1E-10 81.7 7.3 124 37-161 221-350 (768)
73 1ziw_A TOLL-like receptor 3; i 97.9 7.8E-06 2.7E-10 81.9 4.5 37 125-161 401-437 (680)
74 3a79_B TLR6, VLRB.59, TOLL-lik 97.9 2.3E-05 7.9E-10 77.0 7.6 137 20-161 334-480 (562)
75 3goz_A Leucine-rich repeat-con 97.9 1.5E-05 5E-10 74.2 5.8 140 20-161 25-203 (362)
76 2z7x_B TOLL-like receptor 1, v 97.9 6.6E-05 2.2E-09 72.6 10.7 133 21-161 4-145 (520)
77 1wwl_A Monocyte differentiatio 97.9 6.8E-06 2.3E-10 74.9 3.5 156 41-198 65-265 (312)
78 3m19_A Variable lymphocyte rec 97.8 1.1E-05 3.6E-10 71.2 4.3 136 21-161 18-162 (251)
79 3oja_A Leucine-rich immune mol 97.8 5.9E-06 2E-10 80.5 2.8 135 21-161 103-244 (487)
80 2ra8_A Uncharacterized protein 97.8 2.1E-05 7.1E-10 74.2 6.3 110 36-161 190-314 (362)
81 3j0a_A TOLL-like receptor 5; m 97.8 4.6E-05 1.6E-09 78.9 9.4 36 125-161 286-321 (844)
82 2ell_A Acidic leucine-rich nuc 97.8 6.9E-06 2.4E-10 67.7 2.5 118 20-142 27-160 (168)
83 2o6q_A Variable lymphocyte rec 97.8 1.4E-05 4.6E-10 71.3 4.3 136 21-161 20-164 (270)
84 2o6q_A Variable lymphocyte rec 97.8 1.4E-05 4.7E-10 71.2 4.3 138 20-161 40-188 (270)
85 3oja_B Anopheles plasmodium-re 97.8 2.3E-05 7.9E-10 77.9 6.0 54 39-96 232-288 (597)
86 3un9_A NLR family member X1; l 97.8 4.4E-06 1.5E-10 78.9 0.7 35 127-161 181-218 (372)
87 2z66_A Variable lymphocyte rec 97.8 3.1E-06 1.1E-10 76.4 -0.3 143 14-161 49-206 (306)
88 2z81_A CD282 antigen, TOLL-lik 97.8 0.0001 3.4E-09 71.6 10.2 139 20-161 53-203 (549)
89 2z62_A TOLL-like receptor 4, v 97.7 2.7E-05 9.4E-10 69.2 5.5 122 20-143 31-163 (276)
90 3goz_A Leucine-rich repeat-con 97.7 1.6E-05 5.5E-10 73.9 3.7 141 19-161 53-232 (362)
91 4g8a_A TOLL-like receptor 4; l 97.7 2.3E-05 7.9E-10 76.8 4.7 119 40-161 53-180 (635)
92 1jl5_A Outer protein YOPM; leu 97.7 0.00032 1.1E-08 67.5 12.4 113 39-161 131-264 (454)
93 1ziw_A TOLL-like receptor 3; i 97.7 1.3E-05 4.3E-10 80.3 2.5 120 39-161 381-511 (680)
94 1ogq_A PGIP-2, polygalacturona 97.7 2.3E-05 7.7E-10 71.6 3.9 122 39-161 50-181 (313)
95 2o6s_A Variable lymphocyte rec 97.6 2.2E-05 7.4E-10 67.0 3.2 120 38-161 27-155 (208)
96 1xku_A Decorin; proteoglycan, 97.6 2.2E-05 7.7E-10 71.6 3.5 142 16-161 99-247 (330)
97 1xku_A Decorin; proteoglycan, 97.6 6E-05 2.1E-09 68.7 6.1 138 14-161 73-223 (330)
98 1p9a_G Platelet glycoprotein I 97.6 9.1E-05 3.1E-09 67.0 7.1 141 16-161 9-155 (290)
99 1p9a_G Platelet glycoprotein I 97.6 2.5E-05 8.5E-10 70.8 2.8 135 20-161 34-179 (290)
100 2v70_A SLIT-2, SLIT homolog 2 97.6 8.3E-05 2.8E-09 64.4 5.6 137 21-161 15-160 (220)
101 2o6s_A Variable lymphocyte rec 97.6 5.1E-05 1.7E-09 64.6 4.2 131 20-161 31-172 (208)
102 4glp_A Monocyte differentiatio 97.5 6.5E-05 2.2E-09 68.1 5.1 139 16-161 144-301 (310)
103 2je0_A Acidic leucine-rich nuc 97.5 1.8E-05 6.1E-10 63.9 0.8 113 20-137 20-148 (149)
104 1a9n_A U2A', U2A'; complex (nu 97.5 4.7E-05 1.6E-09 63.4 3.4 123 20-146 22-157 (176)
105 3g06_A SSPH2 (leucine-rich rep 97.5 0.00029 9.9E-09 71.0 9.7 67 86-161 201-268 (622)
106 3e6j_A Variable lymphocyte rec 97.5 4.9E-05 1.7E-09 66.3 3.3 120 38-161 39-166 (229)
107 1ogq_A PGIP-2, polygalacturona 97.5 3E-05 1E-09 70.7 1.9 143 15-161 99-251 (313)
108 4g8a_A TOLL-like receptor 4; l 97.5 0.00023 8E-09 69.6 8.1 120 20-142 55-186 (635)
109 3a79_B TLR6, VLRB.59, TOLL-lik 97.4 0.00019 6.5E-09 70.4 7.3 134 20-161 34-176 (562)
110 4ecn_A Leucine-rich repeat pro 97.4 0.00016 5.5E-09 75.6 6.9 145 13-161 487-651 (876)
111 1io0_A Tropomodulin; LRR prote 97.4 9E-05 3.1E-09 62.7 4.1 111 36-161 33-158 (185)
112 4eco_A Uncharacterized protein 97.4 0.00011 3.8E-09 73.7 5.3 143 15-161 247-409 (636)
113 3un9_A NLR family member X1; l 97.4 3.1E-05 1E-09 73.1 0.9 140 20-161 75-246 (372)
114 2xot_A Amphoterin-induced prot 97.4 0.00018 6.1E-09 66.9 6.1 102 39-142 39-149 (361)
115 1ds9_A Outer arm dynein; leuci 97.4 1.8E-05 6E-10 67.3 -0.8 34 38-74 47-80 (198)
116 3m19_A Variable lymphocyte rec 97.4 8.2E-05 2.8E-09 65.4 3.5 138 20-161 38-186 (251)
117 1jl5_A Outer protein YOPM; leu 97.4 0.00066 2.3E-08 65.3 10.0 76 64-142 131-208 (454)
118 2v9t_B SLIT homolog 2 protein 97.4 0.0002 6.8E-09 62.0 5.7 120 38-161 31-159 (220)
119 1dce_A Protein (RAB geranylger 97.3 0.00019 6.5E-09 71.4 5.6 116 41-161 443-567 (567)
120 1ds9_A Outer arm dynein; leuci 97.3 9.2E-06 3.1E-10 69.1 -3.5 121 39-161 23-147 (198)
121 4eco_A Uncharacterized protein 97.3 0.00033 1.1E-08 70.2 6.9 138 20-161 380-543 (636)
122 2ft3_A Biglycan; proteoglycan, 97.3 0.00039 1.3E-08 63.4 6.5 137 20-161 36-179 (332)
123 3e6j_A Variable lymphocyte rec 97.2 0.00023 7.9E-09 61.9 4.7 120 20-142 43-172 (229)
124 2ft3_A Biglycan; proteoglycan, 97.2 7.7E-05 2.6E-09 68.2 1.6 142 15-161 100-248 (332)
125 4ecn_A Leucine-rich repeat pro 97.2 0.00067 2.3E-08 71.0 8.1 52 108-161 729-783 (876)
126 4ay9_X Follicle-stimulating ho 97.1 0.00072 2.5E-08 62.4 6.7 77 21-97 34-115 (350)
127 2v70_A SLIT-2, SLIT homolog 2 97.0 0.00031 1.1E-08 60.7 3.1 121 19-142 34-166 (220)
128 4ay9_X Follicle-stimulating ho 97.0 0.0012 4.1E-08 60.9 6.9 156 38-198 29-214 (350)
129 3sb4_A Hypothetical leucine ri 96.9 0.00055 1.9E-08 62.5 4.0 33 127-161 224-257 (329)
130 2wfh_A SLIT homolog 2 protein 96.9 0.0008 2.7E-08 57.0 4.6 73 20-96 13-88 (193)
131 1w8a_A SLIT protein; signaling 96.9 0.00059 2E-08 57.6 3.6 120 20-142 11-139 (192)
132 2xot_A Amphoterin-induced prot 96.8 0.00076 2.6E-08 62.5 4.5 121 20-143 42-177 (361)
133 2v9t_B SLIT homolog 2 protein 96.8 0.00072 2.5E-08 58.4 3.9 120 20-142 35-165 (220)
134 3cvr_A Invasion plasmid antige 96.6 0.0023 7.7E-08 63.8 6.4 111 19-142 82-193 (571)
135 2o6r_A Variable lymphocyte rec 96.5 0.0026 8.9E-08 52.4 4.7 118 21-142 11-137 (177)
136 4fdw_A Leucine rich hypothetic 96.4 0.0023 7.9E-08 60.8 4.3 162 36-213 177-353 (401)
137 3sb4_A Hypothetical leucine ri 96.4 0.0076 2.6E-07 54.8 7.6 99 38-140 201-308 (329)
138 3cvr_A Invasion plasmid antige 96.1 0.019 6.5E-07 57.1 9.7 125 20-161 103-237 (571)
139 4b8c_D Glucose-repressible alc 96.1 0.0023 7.7E-08 65.4 2.8 105 35-143 220-330 (727)
140 4b8c_D Glucose-repressible alc 96.1 0.0017 5.7E-08 66.4 1.6 101 57-161 217-323 (727)
141 1io0_A Tropomodulin; LRR prote 95.6 0.0042 1.4E-07 52.2 2.0 111 20-145 39-167 (185)
142 2o6r_A Variable lymphocyte rec 95.4 0.0086 2.9E-07 49.2 3.1 51 41-96 9-62 (177)
143 1dce_A Protein (RAB geranylger 95.1 0.016 5.6E-07 57.4 4.8 71 87-161 442-515 (567)
144 3rw6_A Nuclear RNA export fact 95.0 0.015 5E-07 52.4 3.8 88 54-161 160-258 (267)
145 2wfh_A SLIT homolog 2 protein 95.0 0.0096 3.3E-07 50.2 2.3 101 20-141 34-138 (193)
146 4fs7_A Uncharacterized protein 94.2 0.048 1.7E-06 50.8 5.4 14 36-49 250-263 (394)
147 3g39_A Variable lymphocyte rec 93.9 0.036 1.2E-06 45.6 3.4 101 20-142 12-115 (170)
148 1w8a_A SLIT protein; signaling 93.8 0.041 1.4E-06 46.0 3.7 96 20-118 32-137 (192)
149 2r9u_A Variable lymphocyte rec 93.7 0.12 4E-06 42.6 6.2 101 20-142 15-118 (174)
150 4gt6_A Cell surface protein; l 91.8 0.27 9.2E-06 45.6 6.4 55 124-184 329-386 (394)
151 4fdw_A Leucine rich hypothetic 91.0 0.33 1.1E-05 45.7 6.3 143 34-190 198-359 (401)
152 2ifg_A High affinity nerve gro 90.4 0.3 1E-05 44.1 5.3 58 36-95 28-89 (347)
153 3g39_A Variable lymphocyte rec 89.0 0.17 5.7E-06 41.4 2.1 74 20-95 33-111 (170)
154 4gt6_A Cell surface protein; l 88.3 1 3.5E-05 41.6 7.3 97 83-185 262-366 (394)
155 4fs7_A Uncharacterized protein 88.1 0.6 2.1E-05 43.2 5.6 114 35-159 272-393 (394)
156 2r9u_A Variable lymphocyte rec 87.7 0.23 7.8E-06 40.9 2.1 74 20-95 36-114 (174)
157 4h09_A Hypothetical leucine ri 84.8 1.1 3.6E-05 41.0 5.3 94 84-183 238-340 (379)
158 2ifg_A High affinity nerve gro 84.7 0.6 2.1E-05 42.1 3.5 81 60-142 27-116 (347)
159 4h09_A Hypothetical leucine ri 84.3 1.4 4.8E-05 40.2 5.9 93 61-161 237-340 (379)
160 1pgv_A TMD-1, tropomodulin TMD 76.0 2.3 7.9E-05 36.2 4.0 21 129-149 98-118 (197)
161 3rw6_A Nuclear RNA export fact 55.9 6.6 0.00023 34.8 2.9 35 127-161 168-203 (267)
162 1pgv_A TMD-1, tropomodulin TMD 35.6 24 0.00083 29.7 3.1 108 37-161 39-164 (197)
163 2lz0_A Uncharacterized protein 27.7 30 0.001 25.7 2.1 13 125-137 39-51 (100)
No 1
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.03 E-value=2.5e-10 Score=104.67 Aligned_cols=140 Identities=11% Similarity=0.152 Sum_probs=107.9
Q ss_pred eecccCccccCC-CCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceE---EEcCCCCCccEEEEEee
Q 043541 21 YIPQTYCKLDSH-TRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKS---LEFLNLGKLSKFMVRNE 96 (301)
Q Consensus 21 ~~~~~~C~l~~~-~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~---L~i~~~~~Lk~L~i~~C 96 (301)
+++++++.+... ....++++|+.|+|.++.+.+.++...+.+|+.|++|+|++|. +.. -.+.++++|++|++++|
T Consensus 74 ~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 74 AFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp EEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTC
T ss_pred EEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc-cCHHHHHHHhcCCCCCEEECCCC
Confidence 444555554431 1235689999999999998888899999999999999999985 321 13456899999999999
Q ss_pred CCCcee-----EeecCceeEEEEcCC-CCC---Ccccccccc-ccceEeeccc--ccchHHHHHHhccCCCccEEEe
Q 043541 97 DRLARV-----SICGPNVRLVDISSL-HAP---CGINVALCK-NLKEFKLFKI--SITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 97 ~~l~~i-----~i~ap~L~~f~~~g~-~~~---~~i~~~~c~-~Lk~L~L~~~--~It~~~l~~L~~~cp~LE~L~L 161 (301)
..+++. .-..++|++++..++ ... ....+..++ +|++|++.++ .+++..+...+.++++|+.|++
T Consensus 153 ~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 153 SGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp BSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 766542 225799999999887 311 223467888 9999999999 6898889888899999999998
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.87 E-value=4.6e-09 Score=103.31 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=32.9
Q ss_pred cccccceEeecccccchHHHHHHhccCCCccEEEee
Q 043541 127 LCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEIF 162 (301)
Q Consensus 127 ~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L~ 162 (301)
.+++|++|++.++.+++..+..++.++++|+.|.+.
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~ 322 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVL 322 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCc
Confidence 678999999999999999999999999999999983
No 3
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.80 E-value=3.4e-08 Score=90.89 Aligned_cols=133 Identities=13% Similarity=0.096 Sum_probs=70.0
Q ss_pred ceecccCccccCCCCCCCCCCCcEEEecccccCh-HHHHHHHhcCCcccEEeeecCCCceEE-EcCCCCCccEEEEEeeC
Q 043541 20 KYIPQTYCKLDSHTRNVTLSSLRELGLFKCAAND-EAIRDIVAGCPLIECLKIIDCRGLKSL-EFLNLGKLSKFMVRNED 97 (301)
Q Consensus 20 ~~~~~~~C~l~~~~~~~~~~sLk~L~L~~c~i~d-~~L~~Lis~Cp~LE~L~L~~C~~l~~L-~i~~~~~Lk~L~i~~C~ 97 (301)
..+.++++.+..-.+...+++|++|+|.++.+.+ .. +.+++.|++|++++| .+..+ .+.++++|+.|+++++.
T Consensus 47 ~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~----~~~l~~L~~L~L~~n-~i~~~~~~~~l~~L~~L~l~~n~ 121 (347)
T 4fmz_A 47 TKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP----LSNLVKLTNLYIGTN-KITDISALQNLTNLRELYLNEDN 121 (347)
T ss_dssp SEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSS-CCCCCGGGTTCTTCSEEECTTSC
T ss_pred cEEEEeCCccccchhhhhcCCccEEEccCCccccchh----hhcCCcCCEEEccCC-cccCchHHcCCCcCCEEECcCCc
Confidence 4555666666542333457777777777777654 22 567777777777776 33222 24455666666666553
Q ss_pred CCceeE--eecCceeEEEEcCCC-CCCccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 98 RLARVS--ICGPNVRLVDISSLH-APCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 98 ~l~~i~--i~ap~L~~f~~~g~~-~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
++++. -..++|++++..++. ......+..+++|+.|++.++.+++..- +.+++.|+.|++
T Consensus 122 -i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~l 184 (347)
T 4fmz_A 122 -ISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP---IANLTDLYSLSL 184 (347)
T ss_dssp -CCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCSEEEC
T ss_pred -ccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh---hccCCCCCEEEc
Confidence 11111 134556666655543 1111124555555666555555332211 445555555555
No 4
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.80 E-value=1.4e-09 Score=99.73 Aligned_cols=143 Identities=14% Similarity=0.191 Sum_probs=105.7
Q ss_pred eecceecccCccccCC---CCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceE--E--EcCCCCCcc
Q 043541 17 VLSKYIPQTYCKLDSH---TRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKS--L--EFLNLGKLS 89 (301)
Q Consensus 17 ~~~~~~~~~~C~l~~~---~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~--L--~i~~~~~Lk 89 (301)
+==+++++++|.+... ....++++|++|+|.++.+.+.....+. +|+.|++|++++|..+.. + .+.++++|+
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~ 171 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence 4446788888886531 1235699999999999998877666654 599999999999975542 2 134589999
Q ss_pred EEEEEeeCCCceeE-----eecC-ceeEEEEcCCCC-----CCccccccccccceEeecccc-cchHHHHHHhccCCCcc
Q 043541 90 KFMVRNEDRLARVS-----ICGP-NVRLVDISSLHA-----PCGINVALCKNLKEFKLFKIS-ITNEWLCNQFSELPFLE 157 (301)
Q Consensus 90 ~L~i~~C~~l~~i~-----i~ap-~L~~f~~~g~~~-----~~~i~~~~c~~Lk~L~L~~~~-It~~~l~~L~~~cp~LE 157 (301)
.|++++|..+++.. -..| +|++++..++.. .....+..+++|+.|++.++. ++++.... +.+++.|+
T Consensus 172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-l~~l~~L~ 250 (336)
T 2ast_B 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFQLNYLQ 250 (336)
T ss_dssp EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG-GGGCTTCC
T ss_pred EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH-HhCCCCCC
Confidence 99999996555422 2468 999999988731 122345788999999999998 88776664 46779999
Q ss_pred EEEe
Q 043541 158 YVEI 161 (301)
Q Consensus 158 ~L~L 161 (301)
.|++
T Consensus 251 ~L~l 254 (336)
T 2ast_B 251 HLSL 254 (336)
T ss_dssp EEEC
T ss_pred EeeC
Confidence 8887
No 5
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.75 E-value=1.3e-09 Score=93.25 Aligned_cols=103 Identities=14% Similarity=0.181 Sum_probs=76.7
Q ss_pred CCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCc-----eEEEcC--CCCCccEEEEEeeCCCceeEeecCc
Q 043541 36 VTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGL-----KSLEFL--NLGKLSKFMVRNEDRLARVSICGPN 108 (301)
Q Consensus 36 ~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l-----~~L~i~--~~~~Lk~L~i~~C~~l~~i~i~ap~ 108 (301)
..-..|+.|+|++|.++|++++++ ++|+.|++|+|++|..+ +.+.-. .|++|++|++++|.++++-.+.
T Consensus 58 ~~~~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~--- 133 (176)
T 3e4g_A 58 LDKYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII--- 133 (176)
T ss_dssp TTCCCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH---
T ss_pred CCCceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH---
Confidence 344679999999999999999988 69999999999999865 333211 1357999999999888774432
Q ss_pred eeEEEEcCCCCCCccccccccccceEeecccc-cchHHH--HHHhccCCCcc
Q 043541 109 VRLVDISSLHAPCGINVALCKNLKEFKLFKIS-ITNEWL--CNQFSELPFLE 157 (301)
Q Consensus 109 L~~f~~~g~~~~~~i~~~~c~~Lk~L~L~~~~-It~~~l--~~L~~~cp~LE 157 (301)
.+..|++|++|++++|. ||+.+. ..+-...|.++
T Consensus 134 ---------------~L~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 134 ---------------ALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp ---------------HGGGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred ---------------HHhcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 24568899999998886 888663 34456677665
No 6
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.75 E-value=1.3e-08 Score=100.15 Aligned_cols=122 Identities=15% Similarity=0.230 Sum_probs=66.9
Q ss_pred CCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecC--------CCceEEE---c-CCCCCccEEEEEeeCCCceeEe
Q 043541 37 TLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDC--------RGLKSLE---F-LNLGKLSKFMVRNEDRLARVSI 104 (301)
Q Consensus 37 ~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C--------~~l~~L~---i-~~~~~Lk~L~i~~C~~l~~i~i 104 (301)
++++|++|.+.+| +.+.++..++.+|+.|++|++.+| ..+..-. + .+|++|+.|.+ +|.++++..+
T Consensus 312 ~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~ 389 (594)
T 2p1m_B 312 QCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNAAL 389 (594)
T ss_dssp TCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCHHHH
T ss_pred cCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH-hcCCcCHHHH
Confidence 4666666666666 445666666666666666666332 2211000 0 12567777733 4444433221
Q ss_pred -----ecCceeEEEEc--C---CC--CC------CccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 105 -----CGPNVRLVDIS--S---LH--AP------CGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 105 -----~ap~L~~f~~~--g---~~--~~------~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
.+|+|+.+... + +. .. +...+.+|++|++|++.+ .+++..+..+...+++|+.|++
T Consensus 390 ~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L 463 (594)
T 2p1m_B 390 ITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSV 463 (594)
T ss_dssp HHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeec
Confidence 35777777666 3 11 10 001145667777777755 6777766666666777777776
No 7
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.71 E-value=2.7e-08 Score=97.89 Aligned_cols=76 Identities=16% Similarity=0.134 Sum_probs=42.1
Q ss_pred CCCccEEEEEeeCCCceeE-----eecCceeEEEEcCCC-----CC------CccccccccccceEeecccc--cchHHH
Q 043541 85 LGKLSKFMVRNEDRLARVS-----ICGPNVRLVDISSLH-----AP------CGINVALCKNLKEFKLFKIS--ITNEWL 146 (301)
Q Consensus 85 ~~~Lk~L~i~~C~~l~~i~-----i~ap~L~~f~~~g~~-----~~------~~i~~~~c~~Lk~L~L~~~~--It~~~l 146 (301)
|++|++|++ .|.++++-. -.+|+|+++..++.. .. +...+.+|++|++|++.+|. +++..+
T Consensus 377 ~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~ 455 (592)
T 3ogk_B 377 CQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455 (592)
T ss_dssp CTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred CccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence 566666666 344333211 125667776664321 11 11124556777777776543 677777
Q ss_pred HHHhccCCCccEEEe
Q 043541 147 CNQFSELPFLEYVEI 161 (301)
Q Consensus 147 ~~L~~~cp~LE~L~L 161 (301)
..+...+++|+.|++
T Consensus 456 ~~~~~~~~~L~~L~L 470 (592)
T 3ogk_B 456 SYIGQYSPNVRWMLL 470 (592)
T ss_dssp HHHHHSCTTCCEEEE
T ss_pred HHHHHhCccceEeec
Confidence 666666777777776
No 8
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.71 E-value=2.1e-08 Score=92.71 Aligned_cols=137 Identities=18% Similarity=0.222 Sum_probs=94.5
Q ss_pred ceecccCccccC-CCCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE--EcCCCCCccEEEEEee
Q 043541 20 KYIPQTYCKLDS-HTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL--EFLNLGKLSKFMVRNE 96 (301)
Q Consensus 20 ~~~~~~~C~l~~-~~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L--~i~~~~~Lk~L~i~~C 96 (301)
.++.++++.+.. +....++++|++|+|.++.+.. +..-+.+++.|+.|+|+++. +..+ .+.++++|+.|++++|
T Consensus 84 ~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 84 VALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLME--LPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRAC 160 (328)
T ss_dssp CEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCC--CCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEEEEE
T ss_pred eEEEccCCCchhcChhhhhCCCCCEEECCCCCccc--hhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEECCCC
Confidence 356666666654 1234558899999999998762 33334678999999999873 4333 2456789999999998
Q ss_pred CCCceeEe------------ecCceeEEEEcCCC-CCCccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 97 DRLARVSI------------CGPNVRLVDISSLH-APCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 97 ~~l~~i~i------------~ap~L~~f~~~g~~-~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
..+..+.- ..++|+.++..+.. ..+...++.+++|+.|++.++.++. +...+.+++.|+.|++
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDL 236 (328)
T ss_dssp TTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEEEC
T ss_pred CCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc--CchhhccCCCCCEEEC
Confidence 74443321 26888888877665 2333457788899999998887663 2233667888888887
No 9
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.62 E-value=1.3e-07 Score=86.93 Aligned_cols=142 Identities=14% Similarity=0.111 Sum_probs=93.5
Q ss_pred ceeeeecceecccCccccCCCCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE-EcCCCCCccEE
Q 043541 13 SSRLVLSKYIPQTYCKLDSHTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL-EFLNLGKLSKF 91 (301)
Q Consensus 13 ~~~~~~~~~~~~~~C~l~~~~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L-~i~~~~~Lk~L 91 (301)
++.++==+++.+++|.+..-....++++|++|+|.++.+.+ +. -+.+++.|++|+++++. +..+ .+.++++|+.|
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~--~~-~~~~l~~L~~L~l~~n~-i~~~~~~~~l~~L~~L 137 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD--IS-ALQNLTNLRELYLNEDN-ISDISPLANLTKMYSL 137 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--CG-GGTTCTTCSEEECTTSC-CCCCGGGTTCTTCCEE
T ss_pred hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccC--ch-HHcCCCcCCEEECcCCc-ccCchhhccCCceeEE
Confidence 34455456788888877653335678999999999998765 11 26788999999998874 2222 15567888888
Q ss_pred EEEeeCCCceeEe--ecCceeEEEEcCCCCCCccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 92 MVRNEDRLARVSI--CGPNVRLVDISSLHAPCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 92 ~i~~C~~l~~i~i--~ap~L~~f~~~g~~~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
++++|..+..+.- ..++|+++...+........+..+++|+.|++.++.+++-.- +..++.|+.|.+
T Consensus 138 ~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l 206 (347)
T 4fmz_A 138 NLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP---LASLTSLHYFTA 206 (347)
T ss_dssp ECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG---GGGCTTCCEEEC
T ss_pred ECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc---ccCCCccceeec
Confidence 8888764443321 457788877776652211226677788888887776554221 556677777766
No 10
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.58 E-value=5.8e-08 Score=94.08 Aligned_cols=77 Identities=12% Similarity=-0.023 Sum_probs=43.3
Q ss_pred eeeeecceecccCccccCCCCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEEcCCCCCccEEEE
Q 043541 14 SRLVLSKYIPQTYCKLDSHTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLEFLNLGKLSKFMV 93 (301)
Q Consensus 14 ~~~~~~~~~~~~~C~l~~~~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~i~~~~~Lk~L~i 93 (301)
..++==+++.+++|.+..- ...++++|+.|+|+++.+.+-. +.+++.|++|+++++ .+..+.+.++++|+.|++
T Consensus 61 ~~l~~L~~L~Ls~n~l~~~-~~~~l~~L~~L~Ls~N~l~~~~----~~~l~~L~~L~L~~N-~l~~l~~~~l~~L~~L~l 134 (457)
T 3bz5_A 61 EKLTGLTKLICTSNNITTL-DLSQNTNLTYLACDSNKLTNLD----VTPLTKLTYLNCDTN-KLTKLDVSQNPLLTYLNC 134 (457)
T ss_dssp GGCTTCSEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEECCSS-CCSCCCCTTCTTCCEEEC
T ss_pred cccCCCCEEEccCCcCCeE-ccccCCCCCEEECcCCCCceee----cCCCCcCCEEECCCC-cCCeecCCCCCcCCEEEC
Confidence 3334445666677766542 2345777777777777665421 456677777777665 233333444555555555
Q ss_pred Eee
Q 043541 94 RNE 96 (301)
Q Consensus 94 ~~C 96 (301)
+++
T Consensus 135 ~~N 137 (457)
T 3bz5_A 135 ARN 137 (457)
T ss_dssp TTS
T ss_pred CCC
Confidence 544
No 11
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.56 E-value=4.3e-08 Score=96.39 Aligned_cols=125 Identities=15% Similarity=0.172 Sum_probs=92.4
Q ss_pred CCCCCCcEEEecc----------c-ccChHHHHHHHhcCCcccEEeeecCCCceEE---Ec-CCCCCccEEEEEe---eC
Q 043541 36 VTLSSLRELGLFK----------C-AANDEAIRDIVAGCPLIECLKIIDCRGLKSL---EF-LNLGKLSKFMVRN---ED 97 (301)
Q Consensus 36 ~~~~sLk~L~L~~----------c-~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L---~i-~~~~~Lk~L~i~~---C~ 97 (301)
.++++|++|.|.+ | .+++.++..++.+||.|++|++ .|.++..- .+ .+|++|+.|++.. |.
T Consensus 339 ~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n 417 (592)
T 3ogk_B 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREE 417 (592)
T ss_dssp HHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCS
T ss_pred HhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCc
Confidence 3589999999994 5 5677899999999999999999 55554221 11 2378999999985 44
Q ss_pred CCcee---------EeecCceeEEEEcCCC---CC--CccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 98 RLARV---------SICGPNVRLVDISSLH---AP--CGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 98 ~l~~i---------~i~ap~L~~f~~~g~~---~~--~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
.+++. .-.+++|++++...+. .. .......+++|+.|++.++.+++..+..++.+|++|+.|++
T Consensus 418 ~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l 495 (592)
T 3ogk_B 418 RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEM 495 (592)
T ss_dssp CCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEE
T ss_pred cccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeec
Confidence 66553 2247899999884322 11 11123458899999999999999999999999999998887
No 12
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.55 E-value=3.9e-07 Score=83.32 Aligned_cols=133 Identities=13% Similarity=0.100 Sum_probs=83.9
Q ss_pred ceecccCccccCCCCCCCCCCCcEEEecccccCh-HHHHHHHhcCCcccEEeeecCCCceEE-EcCCCCCccEEEEEeeC
Q 043541 20 KYIPQTYCKLDSHTRNVTLSSLRELGLFKCAAND-EAIRDIVAGCPLIECLKIIDCRGLKSL-EFLNLGKLSKFMVRNED 97 (301)
Q Consensus 20 ~~~~~~~C~l~~~~~~~~~~sLk~L~L~~c~i~d-~~L~~Lis~Cp~LE~L~L~~C~~l~~L-~i~~~~~Lk~L~i~~C~ 97 (301)
.++++++|.+..-.+...+++|+.|+|+++.+.+ .. +.+++.|++|+++++. +..+ .+.++++|+.|++++|.
T Consensus 44 ~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~----~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~ 118 (308)
T 1h6u_A 44 TTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP----LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLTSTQ 118 (308)
T ss_dssp CEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG----GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEECTTSC
T ss_pred CEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh----HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEECCCCC
Confidence 4566677766543344557888888888887765 22 6778888888888764 3322 24556778888887764
Q ss_pred CCceeE-e-ecCceeEEEEcCCCCCCccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 98 RLARVS-I-CGPNVRLVDISSLHAPCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 98 ~l~~i~-i-~ap~L~~f~~~g~~~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
++++. + ..++|+.++..+..-.....+..+++|+.|+++++.+++-. . +.+++.|+.|++
T Consensus 119 -l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l 180 (308)
T 1h6u_A 119 -ITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT--P-LANLSKLTTLKA 180 (308)
T ss_dssp -CCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEEC
T ss_pred -CCCchhhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCCh--h-hcCCCCCCEEEC
Confidence 22221 1 35677777777665211112667777888888777766421 1 566777777776
No 13
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.50 E-value=2.5e-07 Score=89.59 Aligned_cols=113 Identities=14% Similarity=0.131 Sum_probs=68.3
Q ss_pred ceecccCccccCCCCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEEcCCCCCccEEEEEeeCCC
Q 043541 20 KYIPQTYCKLDSHTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRL 99 (301)
Q Consensus 20 ~~~~~~~C~l~~~~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~i~~~~~Lk~L~i~~C~~l 99 (301)
.++.++++.+....+..++++|+.|+|+++.+.+-. +.+++.|++|+++++. +..+.+.++++|+.|+++++. +
T Consensus 45 ~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls~N~-l~~~~~~~l~~L~~L~L~~N~-l 118 (457)
T 3bz5_A 45 TSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSNK-LTNLDVTPLTKLTYLNCDTNK-L 118 (457)
T ss_dssp CEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSC-CSCCCCTTCTTCCEEECCSSC-C
T ss_pred CEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc----cccCCCCCEEECcCCC-CceeecCCCCcCCEEECCCCc-C
Confidence 456677776664333456788888888888775421 5677888888888763 444456677888888887763 3
Q ss_pred ceeEe-ecCceeEEEEcCCCCCCccccccccccceEeeccc
Q 043541 100 ARVSI-CGPNVRLVDISSLHAPCGINVALCKNLKEFKLFKI 139 (301)
Q Consensus 100 ~~i~i-~ap~L~~f~~~g~~~~~~i~~~~c~~Lk~L~L~~~ 139 (301)
+.+.+ ..++|+.++..+..-. .+.++.+++|+.|++.++
T Consensus 119 ~~l~~~~l~~L~~L~l~~N~l~-~l~l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 119 TKLDVSQNPLLTYLNCARNTLT-EIDVSHNTQLTELDCHLN 158 (457)
T ss_dssp SCCCCTTCTTCCEEECTTSCCS-CCCCTTCTTCCEEECTTC
T ss_pred CeecCCCCCcCCEEECCCCccc-eeccccCCcCCEEECCCC
Confidence 33333 3466666666554311 112444445555555444
No 14
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.49 E-value=7.1e-08 Score=82.45 Aligned_cols=83 Identities=14% Similarity=0.212 Sum_probs=66.8
Q ss_pred ceecccCccccCCCC---CCCCCCCcEEEecccc-cChHHHHHHHhc---CCcccEEeeecCCCceE--E-EcCCCCCcc
Q 043541 20 KYIPQTYCKLDSHTR---NVTLSSLRELGLFKCA-ANDEAIRDIVAG---CPLIECLKIIDCRGLKS--L-EFLNLGKLS 89 (301)
Q Consensus 20 ~~~~~~~C~l~~~~~---~~~~~sLk~L~L~~c~-i~d~~L~~Lis~---Cp~LE~L~L~~C~~l~~--L-~i~~~~~Lk 89 (301)
+++.+++|.+.. .+ ..++++|++|+|++|. ++|++++.+... |+.||+|+|++|..+.. + .+..|++|+
T Consensus 64 ~~LDLs~~~Itd-~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~ 142 (176)
T 3e4g_A 64 QAIDATDSCIMS-IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLK 142 (176)
T ss_dssp EEEEEESCCCCG-GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCC
T ss_pred eEEeCcCCCccH-HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCC
Confidence 577888898543 22 2579999999999995 889999999984 89999999999986521 1 235689999
Q ss_pred EEEEEeeCCCceeE
Q 043541 90 KFMVRNEDRLARVS 103 (301)
Q Consensus 90 ~L~i~~C~~l~~i~ 103 (301)
+|++++|.++++..
T Consensus 143 ~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 143 YLFLSDLPGVKEKE 156 (176)
T ss_dssp EEEEESCTTCCCHH
T ss_pred EEECCCCCCCCchH
Confidence 99999999887743
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.48 E-value=1.6e-07 Score=89.45 Aligned_cols=121 Identities=12% Similarity=0.100 Sum_probs=63.1
Q ss_pred ceecccCccccCC--CCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE---EcCCCCCccEEEEE
Q 043541 20 KYIPQTYCKLDSH--TRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL---EFLNLGKLSKFMVR 94 (301)
Q Consensus 20 ~~~~~~~C~l~~~--~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L---~i~~~~~Lk~L~i~ 94 (301)
.++.++++.+..- ....++++|++|+|.++.+....-...+.+++.|++|+|+++. +..+ .+.++++|+.|+++
T Consensus 33 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~ 111 (455)
T 3v47_A 33 NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAFNGLANLEVLTLT 111 (455)
T ss_dssp CEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTTTTTTCTTCCEEECT
T ss_pred CEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccChhhccCcccCCEEeCC
Confidence 4566666665431 2234577777777777755321112224567777777777753 3333 23445666666666
Q ss_pred eeCCCce--eE---e-ecCceeEEEEcCCC-CCC-ccc-cccccccceEeecccccc
Q 043541 95 NEDRLAR--VS---I-CGPNVRLVDISSLH-APC-GIN-VALCKNLKEFKLFKISIT 142 (301)
Q Consensus 95 ~C~~l~~--i~---i-~ap~L~~f~~~g~~-~~~-~i~-~~~c~~Lk~L~L~~~~It 142 (301)
+|. ++. .. + ..++|++++..+.. ... ... +.++++|+.|++.++.++
T Consensus 112 ~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 112 QCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TSC-CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCC-CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 653 111 00 1 24566666665554 111 111 455666666666665533
No 16
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.45 E-value=2.7e-07 Score=85.28 Aligned_cols=142 Identities=16% Similarity=0.142 Sum_probs=100.6
Q ss_pred eeecceecccCccccCC-CCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEE-----------cC
Q 043541 16 LVLSKYIPQTYCKLDSH-TRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE-----------FL 83 (301)
Q Consensus 16 ~~~~~~~~~~~C~l~~~-~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~-----------i~ 83 (301)
++-=+++.++++.+..- ....++++|+.|+|.++.+. .+..-+.+++.|+.|+|++|..+..+. +.
T Consensus 103 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~ 180 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180 (328)
T ss_dssp GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEE
T ss_pred CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhc
Confidence 33346778888877642 23456999999999999876 233346789999999999987543321 22
Q ss_pred CCCCccEEEEEeeCCCceeE--e-ecCceeEEEEcCCC-CCCccccccccccceEeecccccchHHHHHHhccCCCccEE
Q 043541 84 NLGKLSKFMVRNEDRLARVS--I-CGPNVRLVDISSLH-APCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYV 159 (301)
Q Consensus 84 ~~~~Lk~L~i~~C~~l~~i~--i-~ap~L~~f~~~g~~-~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L 159 (301)
++++|+.|+++++. ++.+. + ..++|+.++..+.. ......+..+++|+.|+++++.+.+. +...+.+++.|+.|
T Consensus 181 ~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L 258 (328)
T 4fcg_A 181 GLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRN-YPPIFGGRAPLKRL 258 (328)
T ss_dssp ESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCB-CCCCTTCCCCCCEE
T ss_pred cCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhh-hHHHhcCCCCCCEE
Confidence 47899999999884 33331 2 46899999998876 33334678899999999999875432 22345677888888
Q ss_pred Ee
Q 043541 160 EI 161 (301)
Q Consensus 160 ~L 161 (301)
++
T Consensus 259 ~L 260 (328)
T 4fcg_A 259 IL 260 (328)
T ss_dssp EC
T ss_pred EC
Confidence 77
No 17
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.44 E-value=9.5e-07 Score=80.18 Aligned_cols=133 Identities=14% Similarity=0.136 Sum_probs=79.1
Q ss_pred ceecccCccccCCCCCCCCCCCcEEEecccccCh-HHHHHHHhcCCcccEEeeecCCCceEE-EcCCCCCccEEEEEeeC
Q 043541 20 KYIPQTYCKLDSHTRNVTLSSLRELGLFKCAAND-EAIRDIVAGCPLIECLKIIDCRGLKSL-EFLNLGKLSKFMVRNED 97 (301)
Q Consensus 20 ~~~~~~~C~l~~~~~~~~~~sLk~L~L~~c~i~d-~~L~~Lis~Cp~LE~L~L~~C~~l~~L-~i~~~~~Lk~L~i~~C~ 97 (301)
.++.+++|.+..-.+...+++|+.|+|+++.+.+ .. +.+++.|+.|+++++. +..+ .+.++++|+.|+++++.
T Consensus 49 ~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~----l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n~ 123 (291)
T 1h6t_A 49 DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP----LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHNG 123 (291)
T ss_dssp CEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTTSC
T ss_pred cEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc----cccCCCCCEEECCCCc-CCCChhhccCCCCCEEECCCCc
Confidence 4566666666543334557778888888777754 22 6677778888877753 2221 24556777777777663
Q ss_pred CCceeE-e-ecCceeEEEEcCCCCCCccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 98 RLARVS-I-CGPNVRLVDISSLHAPCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 98 ~l~~i~-i-~ap~L~~f~~~g~~~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
++++. + ..++|+.++..+..-.....+..+++|+.|+++++.+++-.- +..++.|+.|++
T Consensus 124 -i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L 185 (291)
T 1h6t_A 124 -ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYL 185 (291)
T ss_dssp -CCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEEC
T ss_pred -CCCChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchh---hcCCCccCEEEC
Confidence 22221 1 346677777666541111245667777777777776554221 556677777666
No 18
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.40 E-value=2.4e-07 Score=83.85 Aligned_cols=141 Identities=20% Similarity=0.240 Sum_probs=73.9
Q ss_pred ceecccCccccCCC-C-CCCCCCCcEEEecccccChH-HHHHHHhcCCcccEEeeecCCCceEE--EcCCCCCccEEEEE
Q 043541 20 KYIPQTYCKLDSHT-R-NVTLSSLRELGLFKCAANDE-AIRDIVAGCPLIECLKIIDCRGLKSL--EFLNLGKLSKFMVR 94 (301)
Q Consensus 20 ~~~~~~~C~l~~~~-~-~~~~~sLk~L~L~~c~i~d~-~L~~Lis~Cp~LE~L~L~~C~~l~~L--~i~~~~~Lk~L~i~ 94 (301)
.++.++++.+..-. + ..++++|+.|+|.++.+.+. ....-..+++.|++|+++++ ++..+ .+.++++|+.|+++
T Consensus 31 ~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L~l~ 109 (306)
T 2z66_A 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQ 109 (306)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECT
T ss_pred CEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCEEECC
Confidence 34556666554311 1 24567777777777665421 11112235677777777765 33322 23456677777766
Q ss_pred eeC--CCce--eEeecCceeEEEEcCCCC--CCccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 95 NED--RLAR--VSICGPNVRLVDISSLHA--PCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 95 ~C~--~l~~--i~i~ap~L~~f~~~g~~~--~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
++. .+.. ..-..++|++++..+... .....+.++++|+.|++.++.+++..+...+..+++|+.|++
T Consensus 110 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 182 (306)
T 2z66_A 110 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182 (306)
T ss_dssp TSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred CCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEEC
Confidence 542 1111 111345666666665541 111235556677777777666655444444556666666666
No 19
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.39 E-value=2.2e-07 Score=89.36 Aligned_cols=255 Identities=15% Similarity=0.122 Sum_probs=131.9
Q ss_pred ceecccCccccCC--CCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCccEEEEE
Q 043541 20 KYIPQTYCKLDSH--TRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMVR 94 (301)
Q Consensus 20 ~~~~~~~C~l~~~--~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i~ 94 (301)
.++.++++.+..- ....++++|++|+|.++.+.+-. ..-..+++.|+.|+|+++ .+..+. +.++++|+.|+++
T Consensus 35 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE-PGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp SEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECT
T ss_pred cEEECCCCccceECHhHccCCCCCCEEECCCCccCEeC-hhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEECC
Confidence 3556666665431 12345777888888777665311 112356777888888775 233332 3456778888887
Q ss_pred eeCCCceeE----eecCceeEEEEcCCCC-C-CccccccccccceEeecccccchHHHHHHhccCCCccEEEe----eee
Q 043541 95 NEDRLARVS----ICGPNVRLVDISSLHA-P-CGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI----FRC 164 (301)
Q Consensus 95 ~C~~l~~i~----i~ap~L~~f~~~g~~~-~-~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L----~~~ 164 (301)
++. ++.+. -..++|+.+...+..- . ....+.++++|+.|++.++.+++-. ...+.++++|+.|++ +..
T Consensus 113 ~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 113 ENK-IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp TSC-CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC-HHHHTTCTTCCEEEEESCCCCE
T ss_pred CCc-cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC-hhHhcccCCCcEEeCCCCcCcE
Confidence 653 22221 1357788887776541 1 1224677888888888888765421 233567788888887 111
Q ss_pred c---------ccceEEeccCCCceeEEe---cCCCeeEEEEccceE--E---ecCCccccceEEEEeec-c----eeecC
Q 043541 165 M---------KIRKLLVRSCNTLDEFKL---DTPNLSVFDYEGDMV--S---FSSNALALSETSLFLTS-L----FLFAP 222 (301)
Q Consensus 165 l---------~I~~L~l~~C~~L~~i~i---~aPnL~sf~y~g~~~--~---~~~~~~~l~~~~l~~~~-~----~~~~~ 222 (301)
+ ++..|.+++|..++.+.- ..++|+++...+..+ + .+.+...++.+++.-.. . ..+.+
T Consensus 191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (477)
T 2id5_A 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270 (477)
T ss_dssp ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence 1 112566666554444321 223667777666543 2 13344455555553110 0 01111
Q ss_pred hHHHHhhhhcCCc----ccccCCCCCCccceEEEEEecccCccchhhHHHHHhccCCCccEEEEEec
Q 043541 223 LKNFLKAAIIPRE----LREILSPPLTYENHVCLAVDSEYNTFSFAKLVDSLLWISPHAETLSIKYN 285 (301)
Q Consensus 223 l~~~~~~~~i~~~----~~~~~~p~~~~lkhL~l~~~~~~~~~~~~~l~~~lL~~~P~letl~l~~~ 285 (301)
++. ++.+.+... ..+.....++.+++|.+.- +. ..++-...+..+|.|++|.+...
T Consensus 271 l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~----N~--l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 271 LLR-LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG----NQ--LTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp CTT-CCEEECCSSCCSEECTTTBTTCTTCCEEECCS----SC--CSCCCGGGBSCGGGCCEEECCSS
T ss_pred ccc-CCEEECCCCccceECHHHhcCcccCCEEECCC----Cc--CceeCHhHcCCCcccCEEEccCC
Confidence 111 111111110 0011233445677776642 11 22222234566789999988766
No 20
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.38 E-value=4.9e-07 Score=77.03 Aligned_cols=117 Identities=18% Similarity=0.214 Sum_probs=80.2
Q ss_pred CCCCCCcEEEecccccCh-HHHHHHHhcCCcccEEeeecCCCceEE-EcCCCCCccEEEEEeeCCCce--e-Ee-ecCce
Q 043541 36 VTLSSLRELGLFKCAAND-EAIRDIVAGCPLIECLKIIDCRGLKSL-EFLNLGKLSKFMVRNEDRLAR--V-SI-CGPNV 109 (301)
Q Consensus 36 ~~~~sLk~L~L~~c~i~d-~~L~~Lis~Cp~LE~L~L~~C~~l~~L-~i~~~~~Lk~L~i~~C~~l~~--i-~i-~ap~L 109 (301)
..+++|+.|++.++.+.+ .+ +..+++|++|++++| ++..+ .+.++++|+.|+++++. ++. . .+ ..++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~----l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTG----IEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKD-VTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTT----GGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTT-CBGGGSCCCTTCTTC
T ss_pred hhcCCccEEeccCCCccChHH----HhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCc-cCcccChhhcCCCCC
Confidence 347788888888887764 32 567888888888887 44433 45667888888888764 221 1 11 45788
Q ss_pred eEEEEcCCCCC--CccccccccccceEeecccc-cchHHHHHHhccCCCccEEEe
Q 043541 110 RLVDISSLHAP--CGINVALCKNLKEFKLFKIS-ITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 110 ~~f~~~g~~~~--~~i~~~~c~~Lk~L~L~~~~-It~~~l~~L~~~cp~LE~L~L 161 (301)
+.++..+..-. ....+..+++|+.|+++++. +++-. .+.+++.|+.|++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l 166 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNI 166 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEEC
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH---hhcCCCCCCEEEC
Confidence 88888776521 12246778889999998886 66532 4677888888877
No 21
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.38 E-value=1.8e-07 Score=77.38 Aligned_cols=124 Identities=27% Similarity=0.332 Sum_probs=90.2
Q ss_pred CCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE-EcCCCCCccEEEEEeeCC---CceeEeecCceeEE
Q 043541 37 TLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL-EFLNLGKLSKFMVRNEDR---LARVSICGPNVRLV 112 (301)
Q Consensus 37 ~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L-~i~~~~~Lk~L~i~~C~~---l~~i~i~ap~L~~f 112 (301)
..++|+.|+|.++.+.+..+...+.+++.|+.|++++|. +..+ .+.++++|+.|+++++.- +....-..++|+.+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 468899999999988744555556788999999999975 4433 345678999999998752 22222237889999
Q ss_pred EEcCCC-CCCc--cccccccccceEeecccccchHH--HHHHhccCCCccEEEe
Q 043541 113 DISSLH-APCG--INVALCKNLKEFKLFKISITNEW--LCNQFSELPFLEYVEI 161 (301)
Q Consensus 113 ~~~g~~-~~~~--i~~~~c~~Lk~L~L~~~~It~~~--l~~L~~~cp~LE~L~L 161 (301)
+..+.. .... ..+..+++|+.|++.++.+++.. ....+..++.|+.|++
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 154 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDG 154 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETT
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecC
Confidence 888776 2222 35778899999999999876532 2346778899998887
No 22
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.35 E-value=2.6e-06 Score=81.96 Aligned_cols=77 Identities=14% Similarity=0.149 Sum_probs=42.5
Q ss_pred eecceecccCccccCCCCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE-EcCCCCCccEEEEEe
Q 043541 17 VLSKYIPQTYCKLDSHTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL-EFLNLGKLSKFMVRN 95 (301)
Q Consensus 17 ~~~~~~~~~~C~l~~~~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L-~i~~~~~Lk~L~i~~ 95 (301)
+-=+++.+++|.+..-....++++|+.|+|.++.+.+.. . +.+++.|++|++++|. +..+ .+.++++|+.|++++
T Consensus 68 ~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~ 143 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT--P-LANLTNLTGLTLFNNQ-ITDIDPLKNLTNLNRLELSS 143 (466)
T ss_dssp TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEEEEE
T ss_pred cCCCEEECCCCccCCchhhhccccCCEEECCCCccccCh--h-hcCCCCCCEEECCCCC-CCCChHHcCCCCCCEEECCC
Confidence 333455666666554222345666666666666654311 1 5566777777776653 2222 145567777777776
Q ss_pred eC
Q 043541 96 ED 97 (301)
Q Consensus 96 C~ 97 (301)
|.
T Consensus 144 n~ 145 (466)
T 1o6v_A 144 NT 145 (466)
T ss_dssp EE
T ss_pred Cc
Confidence 63
No 23
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.32 E-value=8.6e-08 Score=77.82 Aligned_cols=124 Identities=27% Similarity=0.345 Sum_probs=80.7
Q ss_pred CCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE-EcCCCCCccEEEEEeeC--C-CceeEeecCceeEE
Q 043541 37 TLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL-EFLNLGKLSKFMVRNED--R-LARVSICGPNVRLV 112 (301)
Q Consensus 37 ~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L-~i~~~~~Lk~L~i~~C~--~-l~~i~i~ap~L~~f 112 (301)
..++|+.|++.++.+.+..+...+..++.|+.|+++++ .+..+ .+.++++|+.|+++++. + +....-..++|+.+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 35778888888887764444455677888888888876 34333 23456788888888764 1 22211136777777
Q ss_pred EEcCCC-CCCc--cccccccccceEeecccccchHH--HHHHhccCCCccEEEe
Q 043541 113 DISSLH-APCG--INVALCKNLKEFKLFKISITNEW--LCNQFSELPFLEYVEI 161 (301)
Q Consensus 113 ~~~g~~-~~~~--i~~~~c~~Lk~L~L~~~~It~~~--l~~L~~~cp~LE~L~L 161 (301)
+..+.. .... ..+.++++|+.|+++++.+++.. ....+..++.|+.|++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 777665 2211 35677888888888888776532 1345677888887764
No 24
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.31 E-value=3.2e-07 Score=89.56 Aligned_cols=185 Identities=14% Similarity=0.154 Sum_probs=101.5
Q ss_pred ceecccCccccCCCCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE-----EcCCCCCccEEEEE
Q 043541 20 KYIPQTYCKLDSHTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL-----EFLNLGKLSKFMVR 94 (301)
Q Consensus 20 ~~~~~~~C~l~~~~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L-----~i~~~~~Lk~L~i~ 94 (301)
+++.+++|.+.. -....+++|+.|++.++.+....-. ..+|.|++|+++++. +... .+.++++|+.|+++
T Consensus 307 ~~L~l~~n~~~~-l~~~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~ 381 (570)
T 2z63_A 307 QHLELVNCKFGQ-FPTLKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLS 381 (570)
T ss_dssp SEEEEESCBCSS-CCBCBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECC
T ss_pred cEEeeccCcccc-cCcccccccCEEeCcCCcccccccc---ccCCCCCEEeCcCCc-cCccccccccccccCccCEEECC
Confidence 356667777663 2234678888888888765431100 577888888887763 3222 23456778888777
Q ss_pred eeCCCcee---EeecCceeEEEEcCCC-CC--CccccccccccceEeecccccchHHHHHHhccCCCccEEEe----eee
Q 043541 95 NEDRLARV---SICGPNVRLVDISSLH-AP--CGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI----FRC 164 (301)
Q Consensus 95 ~C~~l~~i---~i~ap~L~~f~~~g~~-~~--~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L----~~~ 164 (301)
+|. +..+ .-..++|++++..+.. .. ....+.++++|+.|++.++.+++. ....+.++++|+.|++ +..
T Consensus 382 ~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~ 459 (570)
T 2z63_A 382 FNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLEVLKMAGNSFQE 459 (570)
T ss_dssp SCS-EEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEEC-CTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCc-cccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccccc-chhhhhcCCcCcEEECcCCcCcc
Confidence 664 2111 1245777777776654 11 112356677777777777765432 1233456777777776 110
Q ss_pred ccc----------ceEEeccCCCceeEE---e-cCCCeeEEEEccceE--Ee---cCCccccceEEE
Q 043541 165 MKI----------RKLLVRSCNTLDEFK---L-DTPNLSVFDYEGDMV--SF---SSNALALSETSL 212 (301)
Q Consensus 165 l~I----------~~L~l~~C~~L~~i~---i-~aPnL~sf~y~g~~~--~~---~~~~~~l~~~~l 212 (301)
-.+ ..|.+++|. ++.+. + ..|+|+.+...+..+ +. +.+.++++.+++
T Consensus 460 ~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 525 (570)
T 2z63_A 460 NFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWL 525 (570)
T ss_dssp GEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred ccchhhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEe
Confidence 001 145555542 22221 1 336777777777644 21 233345555554
No 25
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.31 E-value=1.6e-06 Score=87.15 Aligned_cols=133 Identities=14% Similarity=0.134 Sum_probs=75.3
Q ss_pred ceecccCccccCCCCCCCCCCCcEEEecccccCh-HHHHHHHhcCCcccEEeeecCCCceEE-EcCCCCCccEEEEEeeC
Q 043541 20 KYIPQTYCKLDSHTRNVTLSSLRELGLFKCAAND-EAIRDIVAGCPLIECLKIIDCRGLKSL-EFLNLGKLSKFMVRNED 97 (301)
Q Consensus 20 ~~~~~~~C~l~~~~~~~~~~sLk~L~L~~c~i~d-~~L~~Lis~Cp~LE~L~L~~C~~l~~L-~i~~~~~Lk~L~i~~C~ 97 (301)
+++.+++|.+..-....++++|+.|+|.++.+.+ .. +.+++.|+.|+|+++. +..+ .+.++++|+.|++++|.
T Consensus 46 ~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~ 120 (605)
T 1m9s_A 46 DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP----LTNLKNLGWLFLDENK-IKDLSSLKDLKKLKSLSLEHNG 120 (605)
T ss_dssp CCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG----GGGCTTCCEEECCSSC-CCCCTTSTTCTTCCEEECTTSC
T ss_pred CEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh----hccCCCCCEEECcCCC-CCCChhhccCCCCCEEEecCCC
Confidence 4566677776653344568888888888887764 22 6788888888888763 2222 23445666666666553
Q ss_pred CCceeE-e-ecCceeEEEEcCCCCCCccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 98 RLARVS-I-CGPNVRLVDISSLHAPCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 98 ~l~~i~-i-~ap~L~~f~~~g~~~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
+..+. + ..++|+.|+..++.......+..+++|+.|+|+++.+++-.- +..++.|+.|++
T Consensus 121 -l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~L 182 (605)
T 1m9s_A 121 -ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYL 182 (605)
T ss_dssp -CCCCGGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEEC
T ss_pred -CCCCccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEEC
Confidence 21211 1 345666666655441111234555666666666655443211 455556665555
No 26
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.30 E-value=1.3e-06 Score=83.74 Aligned_cols=136 Identities=20% Similarity=0.204 Sum_probs=75.5
Q ss_pred ceecccCccccCC--CCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCccEEEEE
Q 043541 20 KYIPQTYCKLDSH--TRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMVR 94 (301)
Q Consensus 20 ~~~~~~~C~l~~~--~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i~ 94 (301)
.++.++++.+..- ....++++|+.|+|.++.+.+-. ..-..+++.|+.|+|+++. +..+. +.++++|+.|+++
T Consensus 78 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 78 RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp SEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECC
T ss_pred cEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcC-hhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEECC
Confidence 5677777777541 22356889999999988775311 1234578888888888763 33321 2345667777766
Q ss_pred eeCCCceeEe----ecCceeEEEEcCCCCC--Cc-cccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 95 NEDRLARVSI----CGPNVRLVDISSLHAP--CG-INVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 95 ~C~~l~~i~i----~ap~L~~f~~~g~~~~--~~-i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
++. ++.+.- ..++|+.++..+.... .. ..+.++++|+.|+++++.+++- .-+..+++|+.|++
T Consensus 156 ~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~l~~L~~L~L 225 (452)
T 3zyi_A 156 NNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM---PNLTPLVGLEELEM 225 (452)
T ss_dssp SCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC---CCCTTCTTCCEEEC
T ss_pred CCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc---ccccccccccEEEC
Confidence 553 322221 2456666665543211 11 1245566666666666654431 11344555666655
No 27
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.29 E-value=4.8e-07 Score=89.40 Aligned_cols=137 Identities=15% Similarity=0.180 Sum_probs=62.7
Q ss_pred eecccCccccCCC--CCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceE---EEcCCCCCccEEEEEe
Q 043541 21 YIPQTYCKLDSHT--RNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKS---LEFLNLGKLSKFMVRN 95 (301)
Q Consensus 21 ~~~~~~C~l~~~~--~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~---L~i~~~~~Lk~L~i~~ 95 (301)
++.++++.+..-. ...++++|+.|+|.++.+.+ +..-+.+++.|++|+++++. +.. -.+.++++|+.|++++
T Consensus 258 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 258 SINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSC--CCSSCCSCTTCCEEECTTCC-CSBGGGGCGGGCTTCSEEECCS
T ss_pred EEEeecCccCccCHHHhccccCCCEEeccCCccCC--CChhhcccccCCEEECccCC-cCcCchhhhhccCcCCEEECCC
Confidence 4555555554311 12346667777766665542 11113456666666666653 211 1233455566666655
Q ss_pred eCCCceeEe----ecCceeEEEEcCCCCC-C---ccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 96 EDRLARVSI----CGPNVRLVDISSLHAP-C---GINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 96 C~~l~~i~i----~ap~L~~f~~~g~~~~-~---~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
+.....+.. ..++|+.++..+.... . ...+.++++|+.|++.++.+++. ....+.+++.|+.|++
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l 407 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL-KTEAFKECPQLELLDL 407 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEE-CTTTTTTCTTCSEEEC
T ss_pred CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcC-CHHHhcCCccCCeEEC
Confidence 532111111 2355555555444311 0 12344555555555555543321 1122344555555555
No 28
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.28 E-value=1.8e-06 Score=78.89 Aligned_cols=139 Identities=16% Similarity=0.166 Sum_probs=97.1
Q ss_pred eeeeecceecccCccccCCCCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE-EcCCCCCccEEE
Q 043541 14 SRLVLSKYIPQTYCKLDSHTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL-EFLNLGKLSKFM 92 (301)
Q Consensus 14 ~~~~~~~~~~~~~C~l~~~~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L-~i~~~~~Lk~L~ 92 (301)
..++-=+++.+++|.+..-....++++|+.|+|+++.+.+- . -+.+++.|++|+++++. +..+ .+.++++|+.|+
T Consensus 60 ~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~ 135 (308)
T 1h6u_A 60 QYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--S-AIAGLQSIKTLDLTSTQ-ITDVTPLAGLSNLQVLY 135 (308)
T ss_dssp GGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEEECTTSC-CCCCGGGTTCTTCCEEE
T ss_pred hccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--h-hhcCCCCCCEEECCCCC-CCCchhhcCCCCCCEEE
Confidence 34444567888888876533356789999999999988651 1 25678999999999874 3322 256778899999
Q ss_pred EEeeCCCceeE-e-ecCceeEEEEcCCC-CCCccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 93 VRNEDRLARVS-I-CGPNVRLVDISSLH-APCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 93 i~~C~~l~~i~-i-~ap~L~~f~~~g~~-~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
++++. ++.+. + ..++|+.++..+.. .... .+..+++|+.|++.++.+++-.- +..++.|+.|++
T Consensus 136 l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L 202 (308)
T 1h6u_A 136 LDLNQ-ITNISPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKISDISP---LASLPNLIEVHL 202 (308)
T ss_dssp CCSSC-CCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEEC
T ss_pred CCCCc-cCcCccccCCCCccEEEccCCcCCCCh-hhcCCCCCCEEECCCCccCcChh---hcCCCCCCEEEc
Confidence 98774 22221 2 46788888887765 2222 26788899999998887664221 577888888887
No 29
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.26 E-value=5.6e-06 Score=76.47 Aligned_cols=122 Identities=17% Similarity=0.121 Sum_probs=62.4
Q ss_pred CCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE----EcCCCCCccEEEEEeeCCCceeEe----ecCc
Q 043541 37 TLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL----EFLNLGKLSKFMVRNEDRLARVSI----CGPN 108 (301)
Q Consensus 37 ~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L----~i~~~~~Lk~L~i~~C~~l~~i~i----~ap~ 108 (301)
++++|++|+|+++.+.+ .......+++.|++|+++++. ++.+ .+.++++|+.|+++++..++.+.- ..++
T Consensus 98 ~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 175 (353)
T 2z80_A 98 SLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF 175 (353)
T ss_dssp TCTTCCEEECCSSCCSS-CCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred CCCCCCEEECCCCcCCc-CCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCC
Confidence 34555555555554432 111123445555555555542 2211 123456777777777654444421 2466
Q ss_pred eeEEEEcCCC-CC-CccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 109 VRLVDISSLH-AP-CGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 109 L~~f~~~g~~-~~-~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
|+.++..+.. .. ....+..+++|++|++.++.++.- -...+..+++|+.|++
T Consensus 176 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~L 229 (353)
T 2z80_A 176 LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL-LEIFVDVTSSVECLEL 229 (353)
T ss_dssp EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTH-HHHHHHHTTTEEEEEE
T ss_pred CCEEECCCCCcCccCHHHHhccccCCeecCCCCccccc-hhhhhhhcccccEEEC
Confidence 7777666554 11 122456667777777777765421 1223445677777776
No 30
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.26 E-value=2.2e-06 Score=76.65 Aligned_cols=116 Identities=13% Similarity=0.119 Sum_probs=60.8
Q ss_pred CCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEE-cCCCCCccEEEEEeeC--CCceeEeecCceeEEE
Q 043541 37 TLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE-FLNLGKLSKFMVRNED--RLARVSICGPNVRLVD 113 (301)
Q Consensus 37 ~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~-i~~~~~Lk~L~i~~C~--~l~~i~i~ap~L~~f~ 113 (301)
++++|+.|++.++.+.+ +. -+..++.|++|+|+++. +..+. +.++++|+.|+++++. .+..+. .++|+.++
T Consensus 39 ~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~-i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~--~~~L~~L~ 112 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQ-ISDLSPLKDLTKLEELSVNRNRLKNLNGIP--SACLSRLF 112 (263)
T ss_dssp HHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCSSCCSCCTTCC--CSSCCEEE
T ss_pred hcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCc-cCCChhhccCCCCCEEECCCCccCCcCccc--cCcccEEE
Confidence 45666666666666543 11 13456666666666652 22111 4555666666666553 221111 15666666
Q ss_pred EcCCCCCCccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 114 ISSLHAPCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 114 ~~g~~~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
..+..-.....+.++++|+.|+++++.+++-. .+..++.|+.|++
T Consensus 113 L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L 157 (263)
T 1xeu_A 113 LDNNELRDTDSLIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDL 157 (263)
T ss_dssp CCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG---GGGGCTTCCEEEC
T ss_pred ccCCccCCChhhcCcccccEEECCCCcCCCCh---HHccCCCCCEEEC
Confidence 65554111113556666777777666655421 3455666666665
No 31
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.26 E-value=2.1e-06 Score=74.93 Aligned_cols=121 Identities=17% Similarity=0.159 Sum_probs=81.0
Q ss_pred CCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCccEEEEEeeCCCceeEe----ecCcee
Q 043541 38 LSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDRLARVSI----CGPNVR 110 (301)
Q Consensus 38 ~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i~~C~~l~~i~i----~ap~L~ 110 (301)
.++|+.|+|.++.+.+-. .....+++.|+.|+++++..++.+. +.++++|+.|++++|..++.+.- ..++|+
T Consensus 30 ~~~l~~L~l~~n~l~~i~-~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIP-SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CTTCCEEEEESCCCSEEC-TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCcccEEEEeCCcceEEC-HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 347899999988775310 1124578899999999876566653 34678899999998777766542 457888
Q ss_pred EEEEcCCC-CCCccccccccccc---eEeeccc-ccchHHHHHHhccCCCcc-EEEe
Q 043541 111 LVDISSLH-APCGINVALCKNLK---EFKLFKI-SITNEWLCNQFSELPFLE-YVEI 161 (301)
Q Consensus 111 ~f~~~g~~-~~~~i~~~~c~~Lk---~L~L~~~-~It~~~l~~L~~~cp~LE-~L~L 161 (301)
+++..+.. ..+. .+..+++|+ .|++.++ .++.-. ...+.++++|+ .|++
T Consensus 109 ~L~l~~n~l~~lp-~~~~l~~L~~L~~L~l~~N~~l~~i~-~~~~~~l~~L~~~L~l 163 (239)
T 2xwt_C 109 FLGIFNTGLKMFP-DLTKVYSTDIFFILEITDNPYMTSIP-VNAFQGLCNETLTLKL 163 (239)
T ss_dssp EEEEEEECCCSCC-CCTTCCBCCSEEEEEEESCTTCCEEC-TTTTTTTBSSEEEEEC
T ss_pred EEeCCCCCCcccc-ccccccccccccEEECCCCcchhhcC-cccccchhcceeEEEc
Confidence 88887654 2222 266777777 8888887 554210 12245677788 7776
No 32
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.25 E-value=6.4e-07 Score=76.28 Aligned_cols=133 Identities=15% Similarity=0.171 Sum_probs=98.0
Q ss_pred ceecccCccccCCCCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCce---EEEcCCCCCccEEEEEee
Q 043541 20 KYIPQTYCKLDSHTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLK---SLEFLNLGKLSKFMVRNE 96 (301)
Q Consensus 20 ~~~~~~~C~l~~~~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~---~L~i~~~~~Lk~L~i~~C 96 (301)
.++.++++.+..-.+...+++|++|++.++.+.+-. -+.+++.|++|+++++. +. .-.+.++++|+.|++++|
T Consensus 47 ~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~---~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~Ls~n 122 (197)
T 4ezg_A 47 TYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN---PISGLSNLERLRIMGKD-VTSDKIPNLSGLTSLTLLDISHS 122 (197)
T ss_dssp CEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG---GGTTCTTCCEEEEECTT-CBGGGSCCCTTCTTCCEEECCSS
T ss_pred cEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch---hhhcCCCCCEEEeECCc-cCcccChhhcCCCCCCEEEecCC
Confidence 567778887764235567999999999999776521 35679999999999964 32 223567899999999987
Q ss_pred CCCce--eE-e-ecCceeEEEEcCCC--CCCccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 97 DRLAR--VS-I-CGPNVRLVDISSLH--APCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 97 ~~l~~--i~-i-~ap~L~~f~~~g~~--~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
. +++ .. + ..++|+.++..++. .... .+.++++|+.|++.++.|++-. .+..++.|+.|++
T Consensus 123 ~-i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L~l 188 (197)
T 4ezg_A 123 A-HDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYA 188 (197)
T ss_dssp B-CBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT---TGGGCSSCCEEEE
T ss_pred c-cCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH---HhccCCCCCEEEe
Confidence 5 222 11 1 46889999988774 2232 5788999999999999987622 4678899999987
No 33
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.23 E-value=7.6e-07 Score=91.33 Aligned_cols=77 Identities=16% Similarity=0.212 Sum_probs=38.5
Q ss_pred CCCCccEEEEEeeCCCceeE-eecCceeEEEEcCCCC-CCccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 84 NLGKLSKFMVRNEDRLARVS-ICGPNVRLVDISSLHA-PCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 84 ~~~~Lk~L~i~~C~~l~~i~-i~ap~L~~f~~~g~~~-~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
++++|+.|+++++.--..+. -..++|++++..+... .....++.+++|++|++.++.+++. +...+.+++.|+.|++
T Consensus 176 ~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L 254 (768)
T 3rgz_A 176 GCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD-FSRAISTCTELKLLNI 254 (768)
T ss_dssp CCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSC-HHHHTTTCSSCCEEEC
T ss_pred cCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCc-ccHHHhcCCCCCEEEC
Confidence 34555555555443100111 1345666666655541 1111256666777777776666532 2334456666666666
No 34
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.23 E-value=3e-06 Score=77.41 Aligned_cols=117 Identities=12% Similarity=0.107 Sum_probs=61.3
Q ss_pred CCCCCcEEEecccccCh-HHHHHHHhcCCcccEEeeecCCCceEEEcCCCCCccEEEEEeeCCCceeEe-ecCceeEEEE
Q 043541 37 TLSSLRELGLFKCAAND-EAIRDIVAGCPLIECLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLARVSI-CGPNVRLVDI 114 (301)
Q Consensus 37 ~~~sLk~L~L~~c~i~d-~~L~~Lis~Cp~LE~L~L~~C~~l~~L~i~~~~~Lk~L~i~~C~~l~~i~i-~ap~L~~f~~ 114 (301)
++++|+.|+|.++.+.+ .. +.+++.|++|+++++ .+..+. .+++|+.|+++++. ++.+.. ..++|++++.
T Consensus 56 ~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n-~l~~l~--~~~~L~~L~l~~n~-l~~~~~~~~~~L~~L~l 127 (317)
T 3o53_A 56 PFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNN-YVQELL--VGPSIETLHAANNN-ISRVSCSRGQGKKNIYL 127 (317)
T ss_dssp TCTTCCEEECTTSCCEEEEE----ETTCTTCCEEECCSS-EEEEEE--ECTTCCEEECCSSC-CSEEEECCCSSCEEEEC
T ss_pred CCCcCCEEECCCCcCCcchh----hhhcCCCCEEECcCC-cccccc--CCCCcCEEECCCCc-cCCcCccccCCCCEEEC
Confidence 34444555544444332 11 334444444444443 222222 12455555555432 222222 2466777777
Q ss_pred cCCC-CCC-ccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 115 SSLH-APC-GINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 115 ~g~~-~~~-~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
.+.. ... ...+.++++|+.|+++++.+++.....+...++.|+.|++
T Consensus 128 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (317)
T ss_dssp CSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred CCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEEC
Confidence 6654 111 2346677888888888887776544555566788888887
No 35
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.23 E-value=1.7e-06 Score=82.69 Aligned_cols=136 Identities=17% Similarity=0.211 Sum_probs=80.7
Q ss_pred ceecccCccccCC--CCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE---EcCCCCCccEEEEE
Q 043541 20 KYIPQTYCKLDSH--TRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL---EFLNLGKLSKFMVR 94 (301)
Q Consensus 20 ~~~~~~~C~l~~~--~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L---~i~~~~~Lk~L~i~ 94 (301)
+++.++++.+..- ....++++|+.|+|.++.+.+-. ..-..+++.|++|+|+++ .+..+ .+.++++|+.|+++
T Consensus 67 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE-IGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp SEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEEC-GGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECC
T ss_pred cEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccC-hhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceeeCC
Confidence 5677788877641 23466899999999999876411 123457899999999886 34333 13456677777777
Q ss_pred eeCCCceeEe----ecCceeEEEEcCCCCC--C-ccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 95 NEDRLARVSI----CGPNVRLVDISSLHAP--C-GINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 95 ~C~~l~~i~i----~ap~L~~f~~~g~~~~--~-~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
++. ++.+.- ..++|++++..+.... . ...+.++++|+.|++.++.+++- . -+..++.|+.|++
T Consensus 145 ~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L~L 214 (440)
T 3zyj_A 145 NNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--P-NLTPLIKLDELDL 214 (440)
T ss_dssp SCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC--C-CCTTCSSCCEEEC
T ss_pred CCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc--c-ccCCCcccCEEEC
Confidence 653 333221 2466777766653211 1 11355666777777776665421 1 1445666666666
No 36
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.22 E-value=3.6e-06 Score=80.93 Aligned_cols=135 Identities=16% Similarity=0.121 Sum_probs=89.8
Q ss_pred cceecccCccccCCCCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE-EcCCCCCccEEEEEeeC
Q 043541 19 SKYIPQTYCKLDSHTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL-EFLNLGKLSKFMVRNED 97 (301)
Q Consensus 19 ~~~~~~~~C~l~~~~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L-~i~~~~~Lk~L~i~~C~ 97 (301)
=+++.+++|.+........+++|+.|++.++.+.+- . -+..++.|+.|++++|. +..+ .+.++++|+.|+++++.
T Consensus 201 L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~ 276 (466)
T 1o6v_A 201 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--G-TLASLTNLTDLDLANNQ-ISNLAPLSGLTKLTELKLGANQ 276 (466)
T ss_dssp CSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSC
T ss_pred CCEEEecCCcccccccccccCCCCEEECCCCCcccc--h-hhhcCCCCCEEECCCCc-cccchhhhcCCCCCEEECCCCc
Confidence 356677777776522234589999999999987651 1 24578999999998874 2211 25667888888888774
Q ss_pred --CCceeEeecCceeEEEEcCCCCCCccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 98 --RLARVSICGPNVRLVDISSLHAPCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 98 --~l~~i~i~ap~L~~f~~~g~~~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
++.. .-..++|+.++..+........+..+++|+.|+++++.+++..- +..++.|+.|++
T Consensus 277 l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l 338 (466)
T 1o6v_A 277 ISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFF 338 (466)
T ss_dssp CCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEEC
T ss_pred cCcccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh---hccCccCCEeEC
Confidence 2222 11467788888877652211236778888888888887665321 567788888887
No 37
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.21 E-value=9.8e-07 Score=79.06 Aligned_cols=121 Identities=12% Similarity=0.050 Sum_probs=60.8
Q ss_pred CCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE---EcCCCCCccEEEEEeeCCCceeEe----ecCcee
Q 043541 38 LSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL---EFLNLGKLSKFMVRNEDRLARVSI----CGPNVR 110 (301)
Q Consensus 38 ~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L---~i~~~~~Lk~L~i~~C~~l~~i~i----~ap~L~ 110 (301)
.++|++|+|.++.+.+-. .....+++.|++|+++++ .+..+ .+.++++|+.|+++++..++.+.- ..++|+
T Consensus 31 ~~~l~~L~l~~n~i~~~~-~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~ 108 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVP-AASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108 (285)
T ss_dssp CTTCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred CCCceEEEeeCCcCCccC-HHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCC
Confidence 456666666666554311 112245666666666664 34333 234456666666666543433311 235666
Q ss_pred EEEEcCCC-CCC-ccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 111 LVDISSLH-APC-GINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 111 ~f~~~g~~-~~~-~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
+++..+.. ... ...+.++++|+.|++.++.++.- ....+.++++|+.|++
T Consensus 109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l 160 (285)
T 1ozn_A 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL-PDDTFRDLGNLTHLFL 160 (285)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEEC
T ss_pred EEECCCCcCCEECHhHhhCCcCCCEEECCCCccccc-CHhHhccCCCccEEEC
Confidence 66665543 111 12345566666666666654421 0112345566666665
No 38
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.19 E-value=1.2e-06 Score=86.54 Aligned_cols=136 Identities=15% Similarity=0.183 Sum_probs=74.5
Q ss_pred eecccCccccCCCCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEEcCCCCCccEEEEEeeCCCc
Q 043541 21 YIPQTYCKLDSHTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLEFLNLGKLSKFMVRNEDRLA 100 (301)
Q Consensus 21 ~~~~~~C~l~~~~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~i~~~~~Lk~L~i~~C~~l~ 100 (301)
++.++++.+..-....++++|++|++.++.+.+ +..+ +++.|++|+++++..+....+.++++|+.|+++++. ++
T Consensus 289 ~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~--lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~-l~ 363 (606)
T 3vq2_A 289 AMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQ--FPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNA-LS 363 (606)
T ss_dssp EEEEESCCCCCCCCCCTTCCCSEEEEESCCCSS--CCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSC-EE
T ss_pred EEEecCccchhhhhccccccCCEEEcccccCcc--cccC--CCCccceeeccCCcCccchhhccCCCCCEEECcCCc-cC
Confidence 344444544332223446677777777776632 2222 677777777777765555555566777777776653 22
Q ss_pred eeE------eecCceeEEEEcCCC-CCCccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 101 RVS------ICGPNVRLVDISSLH-APCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 101 ~i~------i~ap~L~~f~~~g~~-~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
.+. ...++|++++..+.. ......+.++++|+.|++.++.+++..-...+.+++.|+.|++
T Consensus 364 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 431 (606)
T 3vq2_A 364 FSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI 431 (606)
T ss_dssp EEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEEC
T ss_pred CCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEEC
Confidence 211 134666666665544 1112245566677777776666544322233455666666666
No 39
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.18 E-value=1.6e-06 Score=77.50 Aligned_cols=116 Identities=18% Similarity=0.160 Sum_probs=49.9
Q ss_pred ecccCccccCCCCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCccEEEEEeeCC
Q 043541 22 IPQTYCKLDSHTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDR 98 (301)
Q Consensus 22 ~~~~~C~l~~~~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i~~C~~ 98 (301)
+.++++.+..-.+..++++|+.|+|.++.+.+ +. -+.+++.|+.|+++++ ++..+. +.++++|+.|+++++.
T Consensus 46 L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~- 120 (272)
T 3rfs_A 46 IIANNSDIKSVQGIQYLPNVRYLALGGNKLHD--IS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQ- 120 (272)
T ss_dssp EECTTSCCCCCTTGGGCTTCCEEECTTSCCCC--CG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-
T ss_pred eeeCCCCcccccccccCCCCcEEECCCCCCCC--ch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCCc-
Confidence 33444444332223345556666665555543 11 2345555666665554 222221 2334555555555442
Q ss_pred CceeE---e-ecCceeEEEEcCCC-CCCc-cccccccccceEeecccccc
Q 043541 99 LARVS---I-CGPNVRLVDISSLH-APCG-INVALCKNLKEFKLFKISIT 142 (301)
Q Consensus 99 l~~i~---i-~ap~L~~f~~~g~~-~~~~-i~~~~c~~Lk~L~L~~~~It 142 (301)
++.+. + ..++|++++..+.. .... ..+.++++|+.|++.++.++
T Consensus 121 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (272)
T 3rfs_A 121 LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC
Confidence 11111 1 23445555554443 1111 11344555555555555443
No 40
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.17 E-value=1.1e-06 Score=78.54 Aligned_cols=144 Identities=18% Similarity=0.187 Sum_probs=101.2
Q ss_pred eeeeecceecccCccccCCCCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCccE
Q 043541 14 SRLVLSKYIPQTYCKLDSHTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSK 90 (301)
Q Consensus 14 ~~~~~~~~~~~~~C~l~~~~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~ 90 (301)
..+|==+++.++++.+.......++++|++|+|.++.+.+ .......+++.|++|+++++. +..+. +.++++|+.
T Consensus 60 ~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 137 (272)
T 3rfs_A 60 QYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTY 137 (272)
T ss_dssp GGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCE
T ss_pred ccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCc-cChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCE
Confidence 3445456788888888753344679999999999998763 112234678999999999974 44332 456789999
Q ss_pred EEEEeeCCCceeE---e-ecCceeEEEEcCCC-CCCc-cccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 91 FMVRNEDRLARVS---I-CGPNVRLVDISSLH-APCG-INVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 91 L~i~~C~~l~~i~---i-~ap~L~~f~~~g~~-~~~~-i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
|+++++. ++.+. + ..++|+.++..+.. .... ..+.++++|+.|++.++.+++ .....+.+++.|+.|++
T Consensus 138 L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l 212 (272)
T 3rfs_A 138 LNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWL 212 (272)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEEC
T ss_pred EECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc-cCHHHHhCCcCCCEEEc
Confidence 9999884 43332 1 46889999998875 2222 236788999999999998764 11234567788888877
No 41
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.15 E-value=7e-07 Score=81.67 Aligned_cols=36 Identities=22% Similarity=0.224 Sum_probs=16.1
Q ss_pred cccccccceEeecccccchHHHHHHhccCCCccEEE
Q 043541 125 VALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVE 160 (301)
Q Consensus 125 ~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~ 160 (301)
+..+++|+.|++.++.++.+.....+..++.|+.|.
T Consensus 233 ~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~ 268 (317)
T 3o53_A 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268 (317)
T ss_dssp CCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHH
T ss_pred hhcCCCCCEEEccCCCccCcCHHHHHhccccceEEE
Confidence 334444455555444444334444444444444443
No 42
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.13 E-value=5.2e-06 Score=75.23 Aligned_cols=139 Identities=14% Similarity=0.128 Sum_probs=101.6
Q ss_pred eeeecceecccCccccCCCCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE-EcCCCCCccEEEE
Q 043541 15 RLVLSKYIPQTYCKLDSHTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL-EFLNLGKLSKFMV 93 (301)
Q Consensus 15 ~~~~~~~~~~~~C~l~~~~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L-~i~~~~~Lk~L~i 93 (301)
.++==.++.+++|.+..-....++++|+.|+|.++.+.+ +.. +.+++.|++|+++++. +..+ .+.++++|+.|++
T Consensus 66 ~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~n~-i~~~~~l~~l~~L~~L~l 141 (291)
T 1h6t_A 66 YLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSLEHNG-ISDINGLVHLPQLESLYL 141 (291)
T ss_dssp GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEECTTSC-CCCCGGGGGCTTCCEEEC
T ss_pred cCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC--Chh-hccCCCCCEEECCCCc-CCCChhhcCCCCCCEEEc
Confidence 344446778888888753334679999999999998875 222 6789999999999974 4333 2456789999999
Q ss_pred EeeCCCceeE--eecCceeEEEEcCCCCCCccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 94 RNEDRLARVS--ICGPNVRLVDISSLHAPCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 94 ~~C~~l~~i~--i~ap~L~~f~~~g~~~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
+++. ++.+. -..++|+.++..+..-.-...+..+++|+.|+++++.+++- . -+..++.|+.|++
T Consensus 142 ~~n~-l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l--~-~l~~l~~L~~L~l 207 (291)
T 1h6t_A 142 GNNK-ITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL--R-ALAGLKNLDVLEL 207 (291)
T ss_dssp CSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBC--G-GGTTCTTCSEEEE
T ss_pred cCCc-CCcchhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCCC--h-hhccCCCCCEEEC
Confidence 9874 33332 14689999999887622112378899999999999988762 2 2678899999998
No 43
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.13 E-value=8.5e-06 Score=79.35 Aligned_cols=134 Identities=12% Similarity=0.090 Sum_probs=79.8
Q ss_pred ceecccCccccCCC--CCCCCCCCcEEEecccccCh-HHHHHHHhcCCcccEEeeecCCCceEEEcCCCCCccEEEEEee
Q 043541 20 KYIPQTYCKLDSHT--RNVTLSSLRELGLFKCAAND-EAIRDIVAGCPLIECLKIIDCRGLKSLEFLNLGKLSKFMVRNE 96 (301)
Q Consensus 20 ~~~~~~~C~l~~~~--~~~~~~sLk~L~L~~c~i~d-~~L~~Lis~Cp~LE~L~L~~C~~l~~L~i~~~~~Lk~L~i~~C 96 (301)
.++.++++.+.... ...++++|+.|+|.++.+.+ .. +.+++.|+.|+|+++ .+..+.. .++|+.|++++|
T Consensus 37 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N-~l~~l~~--~~~L~~L~L~~N 109 (487)
T 3oja_A 37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNN-YVQELLV--GPSIETLHAANN 109 (487)
T ss_dssp CEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE----CTTCTTCCEEECCSS-EEEEEEE--CTTCCEEECCSS
T ss_pred cEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc----cccCCCCCEEEecCC-cCCCCCC--CCCcCEEECcCC
Confidence 34555666554311 12356677777777666543 11 556667777777665 3443332 256777777665
Q ss_pred CCCceeEe-ecCceeEEEEcCCC-CC-CccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 97 DRLARVSI-CGPNVRLVDISSLH-AP-CGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 97 ~~l~~i~i-~ap~L~~f~~~g~~-~~-~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
. +..+.. ..++|+.++..+.. .. ....++++++|+.|+|+++.+++.....+..+++.|+.|++
T Consensus 110 ~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 110 N-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (487)
T ss_dssp C-CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred c-CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence 3 222222 34677888777665 22 23356778888888888888776544455556788888887
No 44
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.12 E-value=8e-06 Score=76.36 Aligned_cols=140 Identities=15% Similarity=0.092 Sum_probs=81.9
Q ss_pred eeeeecceecccCccccCCC-C-CCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEEcCCCCCccEE
Q 043541 14 SRLVLSKYIPQTYCKLDSHT-R-NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLEFLNLGKLSKF 91 (301)
Q Consensus 14 ~~~~~~~~~~~~~C~l~~~~-~-~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~i~~~~~Lk~L 91 (301)
..++-=+++.++++.+..-. + ..++++|++|+|.++.+.+-. ...+.+++.|++|+++++ .+..+.+..+++|+.+
T Consensus 114 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~L~~L 191 (390)
T 3o6n_A 114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHA 191 (390)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTSSCTTCCEEECCSS-CCSBCCGGGCTTCSEE
T ss_pred cCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC-hhhccCCCCCCEEECCCC-cCCcccccccccccee
Confidence 34444467888888877522 2 256899999999999875311 122467899999999986 4444455556777777
Q ss_pred EEEeeCCCceeEeecCceeEEEEcCCCCCCccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 92 MVRNEDRLARVSICGPNVRLVDISSLHAPCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 92 ~i~~C~~l~~i~i~ap~L~~f~~~g~~~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
+++++ .++.+. ..++|+.++..+..-. .+.....++|+.|++.++.+++. ..+.+++.|+.|++
T Consensus 192 ~l~~n-~l~~~~-~~~~L~~L~l~~n~l~-~~~~~~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L 255 (390)
T 3o6n_A 192 NVSYN-LLSTLA-IPIAVEELDASHNSIN-VVRGPVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDL 255 (390)
T ss_dssp ECCSS-CCSEEE-CCSSCSEEECCSSCCC-EEECCCCSSCCEEECCSSCCCCC---GGGGGCTTCSEEEC
T ss_pred ecccc-cccccC-CCCcceEEECCCCeee-eccccccccccEEECCCCCCccc---HHHcCCCCccEEEC
Confidence 77654 233322 1245555555544311 01112234566666666655542 23455566666665
No 45
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.12 E-value=5.8e-06 Score=80.59 Aligned_cols=187 Identities=12% Similarity=0.127 Sum_probs=116.8
Q ss_pred ceecccCccccCC-CCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEEcCCCCCccEEEEEeeCC
Q 043541 20 KYIPQTYCKLDSH-TRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLEFLNLGKLSKFMVRNEDR 98 (301)
Q Consensus 20 ~~~~~~~C~l~~~-~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~i~~~~~Lk~L~i~~C~~ 98 (301)
+++.+++|.+..- ....++ +|+.|++.++.+.+ +.. ..++.|+.|++.++.........++++|+.|+++++.
T Consensus 285 ~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~--l~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~- 358 (570)
T 2z63_A 285 SSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQ--FPT--LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG- 358 (570)
T ss_dssp SEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSS--CCB--CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSC-
T ss_pred cEEEecCccchhhhhhhccC-CccEEeeccCcccc--cCc--ccccccCEEeCcCCccccccccccCCCCCEEeCcCCc-
Confidence 4566667766541 223446 99999999998763 111 4789999999999875443333567899999998774
Q ss_pred CceeE------eecCceeEEEEcCCC-CCCccccccccccceEeecccccchHHHHHHhccCCCccEEEe----eeec--
Q 043541 99 LARVS------ICGPNVRLVDISSLH-APCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI----FRCM-- 165 (301)
Q Consensus 99 l~~i~------i~ap~L~~f~~~g~~-~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L----~~~l-- 165 (301)
++.+. ...++|++++..+.. ......+.++++|+.|++.++.+++..-...+.++++|+.|++ +...
T Consensus 359 l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 438 (570)
T 2z63_A 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438 (570)
T ss_dssp CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT
T ss_pred cCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch
Confidence 33332 146889999988765 2222237889999999999988765433345678899999998 1111
Q ss_pred -------ccceEEeccCCCc-eeEE---ecCCCeeEEEEccceE--E---ecCCccccceEEE
Q 043541 166 -------KIRKLLVRSCNTL-DEFK---LDTPNLSVFDYEGDMV--S---FSSNALALSETSL 212 (301)
Q Consensus 166 -------~I~~L~l~~C~~L-~~i~---i~aPnL~sf~y~g~~~--~---~~~~~~~l~~~~l 212 (301)
++..|.+++|.-- ..+. -..++|+.+...+..+ + .+...+.++.+++
T Consensus 439 ~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred hhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence 1115566555311 0111 1346777777776544 2 2233344555544
No 46
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.12 E-value=8e-06 Score=79.12 Aligned_cols=136 Identities=13% Similarity=0.061 Sum_probs=67.3
Q ss_pred eecccCccccCCCCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE-----EcCCCCCccEEEEEe
Q 043541 21 YIPQTYCKLDSHTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL-----EFLNLGKLSKFMVRN 95 (301)
Q Consensus 21 ~~~~~~C~l~~~~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L-----~i~~~~~Lk~L~i~~ 95 (301)
++.+++|.+.......++++|++|+|.++.+.+.... -+.+++.|++|+++++. +..+ .+.++++|+.|++++
T Consensus 306 ~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~ 383 (520)
T 2z7x_B 306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFE-NCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQ 383 (520)
T ss_dssp EEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTT-TCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCS
T ss_pred EEEcCCCccccccchhhCCcccEEEeECCccChhhhh-hhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCC
Confidence 4455555554311114566666666666665431111 22456666666666653 2211 134556666666665
Q ss_pred eCCCceeE----eecCceeEEEEcCCCCCCccccccc-cccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 96 EDRLARVS----ICGPNVRLVDISSLHAPCGINVALC-KNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 96 C~~l~~i~----i~ap~L~~f~~~g~~~~~~i~~~~c-~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
+.--..+. ...++|+.++..+..-. ....... ++|+.|+++++.++ .+...+.+++.|+.|++
T Consensus 384 N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~L 451 (520)
T 2z7x_B 384 NSVSYDEKKGDCSWTKSLLSLNMSSNILT-DTIFRCLPPRIKVLDLHSNKIK--SIPKQVVKLEALQELNV 451 (520)
T ss_dssp SCCBCCGGGCSCCCCTTCCEEECCSSCCC-GGGGGSCCTTCCEEECCSSCCC--CCCGGGGGCTTCCEEEC
T ss_pred CcCCcccccchhccCccCCEEECcCCCCC-cchhhhhcccCCEEECCCCccc--ccchhhhcCCCCCEEEC
Confidence 53111011 12356666666555311 0011111 56777777777665 33333336666766665
No 47
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.10 E-value=5e-06 Score=69.39 Aligned_cols=123 Identities=18% Similarity=0.250 Sum_probs=87.1
Q ss_pred CCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE-EcCCCCCccEEEEEeeCCCceeE----eecCce
Q 043541 35 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL-EFLNLGKLSKFMVRNEDRLARVS----ICGPNV 109 (301)
Q Consensus 35 ~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L-~i~~~~~Lk~L~i~~C~~l~~i~----i~ap~L 109 (301)
..++++|+.|+|.++.+.+ +..+....|.|+.|+++++ .+..+ .+.++++|+.|+++++. ++.+. -..|+|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCC-CCCcccccccCCCCCEEECCCCc-ccccCcchhhcCCCC
Confidence 3568889999999998763 3445556679999999986 45554 34567889999998764 44443 245888
Q ss_pred eEEEEcCCC-CCCcc--ccccccccceEeecccccchH--HHHHHhccCCCccEEEe
Q 043541 110 RLVDISSLH-APCGI--NVALCKNLKEFKLFKISITNE--WLCNQFSELPFLEYVEI 161 (301)
Q Consensus 110 ~~f~~~g~~-~~~~i--~~~~c~~Lk~L~L~~~~It~~--~l~~L~~~cp~LE~L~L 161 (301)
+.++..+.. ..... .+..+++|+.|++.++.+++. .-...+..+|.|+.|++
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCC
Confidence 888887765 22222 467888999999998886642 22335678889998887
No 48
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.08 E-value=1.1e-06 Score=86.82 Aligned_cols=135 Identities=13% Similarity=0.095 Sum_probs=66.3
Q ss_pred ceecccCccccCCCCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE-----EcCCCCCccEEEEE
Q 043541 20 KYIPQTYCKLDSHTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL-----EFLNLGKLSKFMVR 94 (301)
Q Consensus 20 ~~~~~~~C~l~~~~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L-----~i~~~~~Lk~L~i~ 94 (301)
+++.+++|.+..-. ..++++|+.|++.++...+.. -..+++.|+.|+++++ .+..+ .+.++++|+.|+++
T Consensus 310 ~~L~l~~n~l~~lp-~~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~ 384 (606)
T 3vq2_A 310 QSLSIIRCQLKQFP-TLDLPFLKSLTLTMNKGSISF---KKVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLS 384 (606)
T ss_dssp SEEEEESCCCSSCC-CCCCSSCCEEEEESCSSCEEC---CCCCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEECC
T ss_pred CEEEcccccCcccc-cCCCCccceeeccCCcCccch---hhccCCCCCEEECcCC-ccCCCcchhhhhccCCcccEeECC
Confidence 45666777764322 226777777777777433211 1235667777777665 23222 12345666666666
Q ss_pred eeCCCceeE---eecCceeEEEEcCCC-CC-Cc-cccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 95 NEDRLARVS---ICGPNVRLVDISSLH-AP-CG-INVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 95 ~C~~l~~i~---i~ap~L~~f~~~g~~-~~-~~-i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
+|. ++.+. -..++|+.++..+.. .. .. ..+.++++|+.|+++++.+++. ....+.++++|+.|++
T Consensus 385 ~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l 455 (606)
T 3vq2_A 385 FNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID-FDGIFLGLTSLNTLKM 455 (606)
T ss_dssp SCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEEC-CTTTTTTCTTCCEEEC
T ss_pred CCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCcc-chhhhcCCCCCCEEEC
Confidence 553 21111 124556666555543 11 11 1344555666666655554331 1122344555555555
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.07 E-value=3.1e-06 Score=80.42 Aligned_cols=123 Identities=20% Similarity=0.189 Sum_probs=61.7
Q ss_pred CCCCCcEEEecccccChHHHHHHHhc----CCcccEEeeecCCCceE-----E--EcCCCCCccEEEEEeeCCCceeEe-
Q 043541 37 TLSSLRELGLFKCAANDEAIRDIVAG----CPLIECLKIIDCRGLKS-----L--EFLNLGKLSKFMVRNEDRLARVSI- 104 (301)
Q Consensus 37 ~~~sLk~L~L~~c~i~d~~L~~Lis~----Cp~LE~L~L~~C~~l~~-----L--~i~~~~~Lk~L~i~~C~~l~~i~i- 104 (301)
++++|+.|+|+++.+.+.++..+..+ .+.|++|++++|. +.. + .+.++++|+.|+++++. +.+...
T Consensus 111 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~ 188 (461)
T 1z7x_W 111 TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNND-INEAGVR 188 (461)
T ss_dssp SCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHH
T ss_pred cCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHH
Confidence 45566666666665554444444332 3346666655552 110 0 01124667777776654 222111
Q ss_pred --------ecCceeEEEEcCCCCC------CccccccccccceEeecccccchHHHHHHh----ccCCCccEEEe
Q 043541 105 --------CGPNVRLVDISSLHAP------CGINVALCKNLKEFKLFKISITNEWLCNQF----SELPFLEYVEI 161 (301)
Q Consensus 105 --------~ap~L~~f~~~g~~~~------~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~----~~cp~LE~L~L 161 (301)
..++|++++..++.-. +...+..+++|++|+++++.+++..+..+. ..++.|+.|++
T Consensus 189 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L 263 (461)
T 1z7x_W 189 VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 263 (461)
T ss_dssp HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEEC
Confidence 1236666666655411 111234566777777777766665544332 34666776666
No 50
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.06 E-value=3.6e-06 Score=79.98 Aligned_cols=75 Identities=9% Similarity=0.046 Sum_probs=48.8
Q ss_pred CCccEEEEEeeCCCceeE--------eecCceeEEEEcCCCCC---Ccc---ccc-cccccceEeecccccchHHHHH--
Q 043541 86 GKLSKFMVRNEDRLARVS--------ICGPNVRLVDISSLHAP---CGI---NVA-LCKNLKEFKLFKISITNEWLCN-- 148 (301)
Q Consensus 86 ~~Lk~L~i~~C~~l~~i~--------i~ap~L~~f~~~g~~~~---~~i---~~~-~c~~Lk~L~L~~~~It~~~l~~-- 148 (301)
++|+.|++++|. +++.. -..++|+.++..+..-. ... .+. ..++|++|+++++.+++++...
T Consensus 313 ~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 391 (461)
T 1z7x_W 313 CQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA 391 (461)
T ss_dssp CCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred ccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHH
Confidence 467777777664 22211 12478888888776411 000 011 2569999999999999865544
Q ss_pred -HhccCCCccEEEe
Q 043541 149 -QFSELPFLEYVEI 161 (301)
Q Consensus 149 -L~~~cp~LE~L~L 161 (301)
.+..++.|+.|++
T Consensus 392 ~~l~~~~~L~~L~l 405 (461)
T 1z7x_W 392 ATLLANHSLRELDL 405 (461)
T ss_dssp HHHHHCCCCCEEEC
T ss_pred HHHHhCCCccEEEC
Confidence 4567999999988
No 51
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.06 E-value=3.9e-06 Score=79.74 Aligned_cols=197 Identities=14% Similarity=0.151 Sum_probs=110.7
Q ss_pred eeeeecceecccCccccC--CCC--CCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCC--C-----------
Q 043541 14 SRLVLSKYIPQTYCKLDS--HTR--NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCR--G----------- 76 (301)
Q Consensus 14 ~~~~~~~~~~~~~C~l~~--~~~--~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~--~----------- 76 (301)
..++-=+++.+++|.+.. ... ..++++|++|+|.++.+.+..-..++.+++.|++|+++++. +
T Consensus 100 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 179 (455)
T 3v47_A 100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG 179 (455)
T ss_dssp TTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTT
T ss_pred cCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccc
Confidence 334444677888888753 111 45688899999988887643333346778888888887753 1
Q ss_pred --ceEEEcC---------------------CCCCccEEEEEeeC----------------CCceeEee------------
Q 043541 77 --LKSLEFL---------------------NLGKLSKFMVRNED----------------RLARVSIC------------ 105 (301)
Q Consensus 77 --l~~L~i~---------------------~~~~Lk~L~i~~C~----------------~l~~i~i~------------ 105 (301)
++.+.++ .+++|+.|+++++. .++.+.+.
T Consensus 180 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 259 (455)
T 3v47_A 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT 259 (455)
T ss_dssp CEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCC
T ss_pred ccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchh
Confidence 1222221 12456666666552 11111111
Q ss_pred --------------cCceeEEEEcCCCCC--CccccccccccceEeecccccchHHHHHHhccCCCccEEEe----eeec
Q 043541 106 --------------GPNVRLVDISSLHAP--CGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI----FRCM 165 (301)
Q Consensus 106 --------------ap~L~~f~~~g~~~~--~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L----~~~l 165 (301)
.++|+.++..+.... ....+..+++|+.|++.++.+++. ....+.+++.|+.|++ +..+
T Consensus 260 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~ 338 (455)
T 3v47_A 260 NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI-DDNAFWGLTHLLKLNLSQNFLGSI 338 (455)
T ss_dssp SSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCEE
T ss_pred hhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc-ChhHhcCcccCCEEECCCCccCCc
Confidence 256777777665411 122467778888888888876632 1223456788888887 2221
Q ss_pred c---------cceEEeccCCCceeEE---e-cCCCeeEEEEccceE--Ee---cCCccccceEEE
Q 043541 166 K---------IRKLLVRSCNTLDEFK---L-DTPNLSVFDYEGDMV--SF---SSNALALSETSL 212 (301)
Q Consensus 166 ~---------I~~L~l~~C~~L~~i~---i-~aPnL~sf~y~g~~~--~~---~~~~~~l~~~~l 212 (301)
. +..|.++++. ++.+. + ..|+|+.+...++.+ +. +...+.++.+++
T Consensus 339 ~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 402 (455)
T 3v47_A 339 DSRMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWL 402 (455)
T ss_dssp CGGGGTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred ChhHhcCcccCCEEECCCCc-ccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEc
Confidence 1 1156666652 33331 1 346788888877654 22 233345665554
No 52
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.06 E-value=6.4e-06 Score=73.33 Aligned_cols=120 Identities=18% Similarity=0.245 Sum_probs=64.4
Q ss_pred CCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCccEEEEEeeCCCceeEe----ecCceeE
Q 043541 39 SSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDRLARVSI----CGPNVRL 111 (301)
Q Consensus 39 ~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i~~C~~l~~i~i----~ap~L~~ 111 (301)
++|++|+|+++.+.+-.. ....+++.|+.|+++++ .+..+. +.++++|+.|+++++. ++.+.. ..++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 104 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQK 104 (276)
T ss_dssp TTCCEEECTTCCCCEECT-TTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCE
T ss_pred CCccEEECCCCcccccCH-hHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccE
Confidence 347777777666543110 12345666777777665 344332 3445666666666543 222221 2456666
Q ss_pred EEEcCCC-CCC-ccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 112 VDISSLH-APC-GINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 112 f~~~g~~-~~~-~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
+...+.. ... ...+..+++|+.|++.++.+++-.+...+.++++|+.|++
T Consensus 105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~L 156 (276)
T 2z62_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156 (276)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred EECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEEC
Confidence 6665543 111 1235566677777777666554333344556667777766
No 53
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.06 E-value=1.5e-05 Score=77.56 Aligned_cols=135 Identities=14% Similarity=0.151 Sum_probs=78.2
Q ss_pred ceecccCccccCC-----CCCCCCCCCcEEEecccccCh-HHHHHHHhcCCcccEEeeecCCCceEE--EcCCCCCccEE
Q 043541 20 KYIPQTYCKLDSH-----TRNVTLSSLRELGLFKCAAND-EAIRDIVAGCPLIECLKIIDCRGLKSL--EFLNLGKLSKF 91 (301)
Q Consensus 20 ~~~~~~~C~l~~~-----~~~~~~~sLk~L~L~~c~i~d-~~L~~Lis~Cp~LE~L~L~~C~~l~~L--~i~~~~~Lk~L 91 (301)
+++.++++.+... ....++++|+.|+|+++.+.+ ........+++.|++|+++++ .+..+ .+.++++|+.|
T Consensus 337 ~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L 415 (549)
T 2z81_A 337 EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFL 415 (549)
T ss_dssp CEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEE
T ss_pred cEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC-CCccCChhhcccccccEE
Confidence 3555555555320 112346667777777766654 222344566777777777765 33322 12345677777
Q ss_pred EEEeeCCCceeEee-cCceeEEEEcCCCCCCccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 92 MVRNEDRLARVSIC-GPNVRLVDISSLHAPCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 92 ~i~~C~~l~~i~i~-ap~L~~f~~~g~~~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
+++++. ++.+.-. .++|++++..+.. ..-...++++|+.|+++++.++ .+.. ...+++|+.|++
T Consensus 416 ~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~--l~~~~~~l~~L~~L~Ls~N~l~--~ip~-~~~l~~L~~L~L 480 (549)
T 2z81_A 416 NLSSTG-IRVVKTCIPQTLEVLDVSNNN--LDSFSLFLPRLQELYISRNKLK--TLPD-ASLFPVLLVMKI 480 (549)
T ss_dssp ECTTSC-CSCCCTTSCTTCSEEECCSSC--CSCCCCCCTTCCEEECCSSCCS--SCCC-GGGCTTCCEEEC
T ss_pred ECCCCC-cccccchhcCCceEEECCCCC--hhhhcccCChhcEEECCCCccC--cCCC-cccCccCCEEec
Confidence 777664 3322211 2577888777664 1112357889999999999876 2222 245788888887
No 54
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.05 E-value=3.9e-06 Score=73.27 Aligned_cols=121 Identities=11% Similarity=0.043 Sum_probs=84.2
Q ss_pred ceecccCccccCC-C-CCCCCCCCcEEEecccc-cChHHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCccEEEE
Q 043541 20 KYIPQTYCKLDSH-T-RNVTLSSLRELGLFKCA-ANDEAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMV 93 (301)
Q Consensus 20 ~~~~~~~C~l~~~-~-~~~~~~sLk~L~L~~c~-i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i 93 (301)
+++.++++.+..- . ...++++|++|+|.++. +.+ .-..-..+++.|++|++++|..++.+. +.++++|+.|++
T Consensus 34 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~-i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l 112 (239)
T 2xwt_C 34 QTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ-LESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI 112 (239)
T ss_dssp CEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCE-ECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEE
T ss_pred cEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcce-eCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeC
Confidence 4666777776541 1 23569999999999996 543 001124689999999999988887764 346899999999
Q ss_pred EeeC--CCceeEeecCcee---EEEEcCC-C-CCCc-cccccccccc-eEeecccccc
Q 043541 94 RNED--RLARVSICGPNVR---LVDISSL-H-APCG-INVALCKNLK-EFKLFKISIT 142 (301)
Q Consensus 94 ~~C~--~l~~i~i~ap~L~---~f~~~g~-~-~~~~-i~~~~c~~Lk-~L~L~~~~It 142 (301)
+++. .+.+ .-..++|+ .++..+. . .... ..+.++++|+ .|++.++.++
T Consensus 113 ~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 113 FNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp EEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred CCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 9885 2222 11346666 8888876 3 2222 2377899999 9999988765
No 55
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.04 E-value=6e-06 Score=77.24 Aligned_cols=123 Identities=15% Similarity=0.098 Sum_probs=59.5
Q ss_pred CCCCcEEEecccccChHHHHHH---HhcCCcccEEeeecCC--Cc--------eEE--EcCCCCCccEEEEEeeCCCce-
Q 043541 38 LSSLRELGLFKCAANDEAIRDI---VAGCPLIECLKIIDCR--GL--------KSL--EFLNLGKLSKFMVRNEDRLAR- 101 (301)
Q Consensus 38 ~~sLk~L~L~~c~i~d~~L~~L---is~Cp~LE~L~L~~C~--~l--------~~L--~i~~~~~Lk~L~i~~C~~l~~- 101 (301)
+++|++|+|+++.+.+.+...+ +.+++.|+.|+|++|. .+ +.+ .+.++++|+.|+++++. +..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~ 109 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FGPT 109 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-CCTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc-CCHH
Confidence 5566666666666665444333 3356666666666652 11 000 11345566666666553 111
Q ss_pred ----e---EeecCceeEEEEcCCCCC------Cccccccc---------cccceEeecccccchHHHH---HHhccCCCc
Q 043541 102 ----V---SICGPNVRLVDISSLHAP------CGINVALC---------KNLKEFKLFKISITNEWLC---NQFSELPFL 156 (301)
Q Consensus 102 ----i---~i~ap~L~~f~~~g~~~~------~~i~~~~c---------~~Lk~L~L~~~~It~~~l~---~L~~~cp~L 156 (301)
+ --..++|+++...++... +.-.+..+ ++|++|++.++.+++..+. ..+..++.|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 1 013456666665554310 00011222 5666666666666554444 334456666
Q ss_pred cEEEe
Q 043541 157 EYVEI 161 (301)
Q Consensus 157 E~L~L 161 (301)
+.|.+
T Consensus 190 ~~L~L 194 (386)
T 2ca6_A 190 HTVKM 194 (386)
T ss_dssp CEEEC
T ss_pred CEEEC
Confidence 66655
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.04 E-value=6.1e-06 Score=73.84 Aligned_cols=144 Identities=15% Similarity=0.089 Sum_probs=95.8
Q ss_pred eeeeecceecccCccccCC--CCCCCCCCCcEEEecccc-cChHHHHHHHhcCCcccEEeeecCCCceEE---EcCCCCC
Q 043541 14 SRLVLSKYIPQTYCKLDSH--TRNVTLSSLRELGLFKCA-ANDEAIRDIVAGCPLIECLKIIDCRGLKSL---EFLNLGK 87 (301)
Q Consensus 14 ~~~~~~~~~~~~~C~l~~~--~~~~~~~sLk~L~L~~c~-i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L---~i~~~~~ 87 (301)
..++==+++.++++.+..- ....++++|++|+|.++. +.+- ......+++.|++|+++++. +..+ .+.++++
T Consensus 53 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~ 130 (285)
T 1ozn_A 53 RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAA 130 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTT
T ss_pred ccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc-CHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcC
Confidence 3344446777777766531 234568999999999996 5431 12234678999999999874 3332 2456789
Q ss_pred ccEEEEEeeCCCceeE---e-ecCceeEEEEcCCC-CCCc-cccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 88 LSKFMVRNEDRLARVS---I-CGPNVRLVDISSLH-APCG-INVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 88 Lk~L~i~~C~~l~~i~---i-~ap~L~~f~~~g~~-~~~~-i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
|+.|+++++. ++.+. + ..++|++++..+.. .... ..+.++++|+.|++.++.+++.. ...+.+++.|+.|++
T Consensus 131 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l 208 (285)
T 1ozn_A 131 LQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH-PHAFRDLGRLMTLYL 208 (285)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEEC
T ss_pred CCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccC-HhHccCcccccEeeC
Confidence 9999998774 33322 2 36789999988765 2222 23678899999999998876432 233466788888887
No 57
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.03 E-value=5.6e-06 Score=77.46 Aligned_cols=34 Identities=15% Similarity=0.111 Sum_probs=15.7
Q ss_pred ccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 126 ALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 126 ~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
..+++|+.|+++++.++. +...+..++.|+.|++
T Consensus 292 ~~l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~L 325 (390)
T 3o6n_A 292 QPIPTLKVLDLSHNHLLH--VERNQPQFDRLENLYL 325 (390)
T ss_dssp SCCTTCCEEECCSSCCCC--CGGGHHHHTTCSEEEC
T ss_pred CCCCCCCEEECCCCccee--cCccccccCcCCEEEC
Confidence 345556666665555431 1111233455555554
No 58
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.03 E-value=1.5e-05 Score=74.56 Aligned_cols=124 Identities=15% Similarity=0.116 Sum_probs=77.9
Q ss_pred CCCCCcEEEecccccChH---HHHHHHhcCCcccEEeeecCCC----ceEEE--cCCC---------CCccEEEEEeeCC
Q 043541 37 TLSSLRELGLFKCAANDE---AIRDIVAGCPLIECLKIIDCRG----LKSLE--FLNL---------GKLSKFMVRNEDR 98 (301)
Q Consensus 37 ~~~sLk~L~L~~c~i~d~---~L~~Lis~Cp~LE~L~L~~C~~----l~~L~--i~~~---------~~Lk~L~i~~C~~ 98 (301)
++++|++|+|+++.+.+. .+...+.+++.|++|+|++|.- ...+. +..+ ++|+.|++++|.
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~- 170 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR- 170 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-
T ss_pred hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-
Confidence 456666666666666542 3334455666777777766531 00110 1112 688888888774
Q ss_pred Cce--eE------eecCceeEEEEcCCCCC------C-ccccccccccceEeecccccchHHH---HHHhccCCCccEEE
Q 043541 99 LAR--VS------ICGPNVRLVDISSLHAP------C-GINVALCKNLKEFKLFKISITNEWL---CNQFSELPFLEYVE 160 (301)
Q Consensus 99 l~~--i~------i~ap~L~~f~~~g~~~~------~-~i~~~~c~~Lk~L~L~~~~It~~~l---~~L~~~cp~LE~L~ 160 (301)
+.+ +. -..++|+++...++.-. . ...+..+++|+.|+|+++.+++.+. ...+..++.|+.|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 221 11 14578999988876521 1 1146788999999999999987554 44568899999998
Q ss_pred e
Q 043541 161 I 161 (301)
Q Consensus 161 L 161 (301)
+
T Consensus 251 L 251 (386)
T 2ca6_A 251 L 251 (386)
T ss_dssp C
T ss_pred C
Confidence 8
No 59
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.02 E-value=5.6e-06 Score=83.20 Aligned_cols=141 Identities=14% Similarity=0.120 Sum_probs=102.8
Q ss_pred ceeeeecceecccCccccCCCCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE-EcCCCCCccEE
Q 043541 13 SSRLVLSKYIPQTYCKLDSHTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL-EFLNLGKLSKF 91 (301)
Q Consensus 13 ~~~~~~~~~~~~~~C~l~~~~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L-~i~~~~~Lk~L 91 (301)
++.+|-=+++.+++|.+..-....++++|+.|.|.++.+.+ +. -+.+++.|+.|+|+++. +..+ .+.++++|+.|
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L 136 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKSLSLEHNG-ISDINGLVHLPQLESL 136 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC--CT-TSTTCTTCCEEECTTSC-CCCCGGGGGCTTCSEE
T ss_pred HccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC--Ch-hhccCCCCCEEEecCCC-CCCCccccCCCccCEE
Confidence 34455556788888887753334679999999999998865 11 35689999999999874 3333 24568899999
Q ss_pred EEEeeCCCceeE--eecCceeEEEEcCCCCCCccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 92 MVRNEDRLARVS--ICGPNVRLVDISSLHAPCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 92 ~i~~C~~l~~i~--i~ap~L~~f~~~g~~~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
++++|. +..+. -..++|+.|+.+++...-...+..+++|+.|+|+++.|++- .-+..+++|+.|++
T Consensus 137 ~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l---~~l~~l~~L~~L~L 204 (605)
T 1m9s_A 137 YLGNNK-ITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLEL 204 (605)
T ss_dssp ECCSSC-CCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBC---GGGTTCTTCSEEEC
T ss_pred ECCCCc-cCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCC---hHHccCCCCCEEEc
Confidence 999874 33332 14689999999887622122378899999999999988762 23678899999998
No 60
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.02 E-value=5.1e-06 Score=82.00 Aligned_cols=145 Identities=16% Similarity=0.138 Sum_probs=94.1
Q ss_pred eeeecceecccCccccC-CCCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE---EcCCCCCccE
Q 043541 15 RLVLSKYIPQTYCKLDS-HTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL---EFLNLGKLSK 90 (301)
Q Consensus 15 ~~~~~~~~~~~~C~l~~-~~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L---~i~~~~~Lk~ 90 (301)
.++==+++.++++.+.. +....++++|++|+|.++.+.+. ...-+.+++.|++|+++++.-...+ .+.++++|+.
T Consensus 276 ~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 354 (606)
T 3t6q_A 276 CFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL-CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354 (606)
T ss_dssp TCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBG-GGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCE
T ss_pred cccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcC-chhhhhccCcCCEEECCCCCcccccchhhhhccCcCCE
Confidence 34444677888887764 22345689999999999987642 1234567899999999887532122 2456788888
Q ss_pred EEEEeeCCCceeE-----e-ecCceeEEEEcCCCC-C-CccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 91 FMVRNEDRLARVS-----I-CGPNVRLVDISSLHA-P-CGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 91 L~i~~C~~l~~i~-----i-~ap~L~~f~~~g~~~-~-~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
|+++++. ++.+. + ..++|++++..+... . ....+..+++|+.|++.++.+++......+.+++.|+.|++
T Consensus 355 L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 432 (606)
T 3t6q_A 355 LDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432 (606)
T ss_dssp EECCSSC-CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC
T ss_pred EECCCCc-cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEEC
Confidence 8888764 33322 1 357788888776641 1 12246677888888888877665433344566777887777
No 61
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.01 E-value=4.5e-06 Score=78.79 Aligned_cols=124 Identities=15% Similarity=0.079 Sum_probs=86.0
Q ss_pred CCCCCcEEEecccccC-------h-HHHHHHHhcCCcccEEeeecCCCceEEEcCCCCCccEEEEEeeCC----CceeEe
Q 043541 37 TLSSLRELGLFKCAAN-------D-EAIRDIVAGCPLIECLKIIDCRGLKSLEFLNLGKLSKFMVRNEDR----LARVSI 104 (301)
Q Consensus 37 ~~~sLk~L~L~~c~i~-------d-~~L~~Lis~Cp~LE~L~L~~C~~l~~L~i~~~~~Lk~L~i~~C~~----l~~i~i 104 (301)
++++||.|.+...... + ..+..++..+|.||+|.|+++.+++--.+. +++|++|.+..|.- ++.+..
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~ 215 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILG 215 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHH
Confidence 5899999999765321 1 247789999999999999998554322233 58999999997751 222222
Q ss_pred -ecCceeEEEEcCC------CC---CC--ccccccccccceEeecccccchHHHHHHh--ccCCCccEEEe
Q 043541 105 -CGPNVRLVDISSL------HA---PC--GINVALCKNLKEFKLFKISITNEWLCNQF--SELPFLEYVEI 161 (301)
Q Consensus 105 -~ap~L~~f~~~g~------~~---~~--~i~~~~c~~Lk~L~L~~~~It~~~l~~L~--~~cp~LE~L~L 161 (301)
..|+|++|..... .. .. .+....+++|+.|+|..|.++++....++ ..+|.|+.|++
T Consensus 216 ~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdL 286 (362)
T 2ra8_A 216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDI 286 (362)
T ss_dssp SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEEC
T ss_pred ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEEC
Confidence 5799999986321 10 11 11224689999999999999987765554 36788999888
No 62
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.01 E-value=5.1e-06 Score=79.74 Aligned_cols=76 Identities=17% Similarity=0.101 Sum_probs=38.2
Q ss_pred cceecccCccccCC--CCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE---EcCCCCCccEEEE
Q 043541 19 SKYIPQTYCKLDSH--TRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL---EFLNLGKLSKFMV 93 (301)
Q Consensus 19 ~~~~~~~~C~l~~~--~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L---~i~~~~~Lk~L~i 93 (301)
=+++.++++.+... ....++++|+.|+|.++.+.+-.. .-..+++.|++|+|+++. +..+ .+.++++|+.|++
T Consensus 106 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l 183 (477)
T 2id5_A 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH-RAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRL 183 (477)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT-TSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEE
T ss_pred CCEEECCCCccccCChhHccccccCCEEECCCCccceeCh-hhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeC
Confidence 34566666665431 123456777777777766543110 113456667777776652 2211 1233455555555
Q ss_pred Eee
Q 043541 94 RNE 96 (301)
Q Consensus 94 ~~C 96 (301)
+++
T Consensus 184 ~~n 186 (477)
T 2id5_A 184 RHL 186 (477)
T ss_dssp ESC
T ss_pred CCC
Confidence 543
No 63
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.97 E-value=7.2e-06 Score=73.27 Aligned_cols=131 Identities=18% Similarity=0.263 Sum_probs=98.5
Q ss_pred ceecccCccccCCCCCCCCCCCcEEEecccccCh-HHHHHHHhcCCcccEEeeecCCCceEE-EcCCCCCccEEEEEeeC
Q 043541 20 KYIPQTYCKLDSHTRNVTLSSLRELGLFKCAAND-EAIRDIVAGCPLIECLKIIDCRGLKSL-EFLNLGKLSKFMVRNED 97 (301)
Q Consensus 20 ~~~~~~~C~l~~~~~~~~~~sLk~L~L~~c~i~d-~~L~~Lis~Cp~LE~L~L~~C~~l~~L-~i~~~~~Lk~L~i~~C~ 97 (301)
+++.+++|.+..-.+..++++|+.|+|.++.+.+ .. +.+++.|+.|+++++. +..+ .+.+ ++|+.|+++++.
T Consensus 44 ~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~----l~~l~~L~~L~L~~N~-l~~l~~~~~-~~L~~L~L~~N~ 117 (263)
T 1xeu_A 44 QNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP----LKDLTKLEELSVNRNR-LKNLNGIPS-ACLSRLFLDNNE 117 (263)
T ss_dssp SEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG----GTTCSSCCEEECCSSC-CSCCTTCCC-SSCCEEECCSSC
T ss_pred cEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh----hccCCCCCEEECCCCc-cCCcCcccc-CcccEEEccCCc
Confidence 5677888877653444679999999999998875 32 7889999999999974 3332 1233 789999999874
Q ss_pred CCceeE-e-ecCceeEEEEcCCC-CCCccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 98 RLARVS-I-CGPNVRLVDISSLH-APCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 98 ~l~~i~-i-~ap~L~~f~~~g~~-~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
++.+. + ..++|+.++..+.. .... .+..+++|+.|+++++.+++. ..+..++.|+.|++
T Consensus 118 -l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l 179 (263)
T 1xeu_A 118 -LRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDL 179 (263)
T ss_dssp -CSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEE
T ss_pred -cCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeC
Confidence 33332 2 46889999998876 2222 578899999999999998775 55678899999988
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.95 E-value=3.6e-06 Score=77.82 Aligned_cols=124 Identities=15% Similarity=0.152 Sum_probs=79.4
Q ss_pred cceecccCccccCCCC--CCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE---EcCCCCCccEEEE
Q 043541 19 SKYIPQTYCKLDSHTR--NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL---EFLNLGKLSKFMV 93 (301)
Q Consensus 19 ~~~~~~~~C~l~~~~~--~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L---~i~~~~~Lk~L~i 93 (301)
=+++.++++.+..-.. ..++++|++|+|.++.+.+-.......+++.|+.|+++++..+..+ .+.++++|+.|++
T Consensus 102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 181 (353)
T 2z80_A 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181 (353)
T ss_dssp CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEEC
Confidence 3567777777764111 2468999999999997753111124567899999999998666655 3456788999999
Q ss_pred EeeCCCceeE---e-ecCceeEEEEcCCCCC-Cc-cccccccccceEeecccccch
Q 043541 94 RNEDRLARVS---I-CGPNVRLVDISSLHAP-CG-INVALCKNLKEFKLFKISITN 143 (301)
Q Consensus 94 ~~C~~l~~i~---i-~ap~L~~f~~~g~~~~-~~-i~~~~c~~Lk~L~L~~~~It~ 143 (301)
+++. ++.+. + ..++|++++..+.... .. ..+..+++|+.|++.++.+++
T Consensus 182 ~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 182 DASD-LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp EETT-CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTT
T ss_pred CCCC-cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccc
Confidence 8774 22221 1 3467777777665411 11 123446777777777776554
No 65
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.95 E-value=2.5e-06 Score=77.60 Aligned_cols=125 Identities=14% Similarity=0.094 Sum_probs=79.7
Q ss_pred CCCCCcEEEecccccChHHHHHHHh--cCCcccEEeeecCCC--ceEEEc--CCCCCccEEEEEeeCCCc------eeEe
Q 043541 37 TLSSLRELGLFKCAANDEAIRDIVA--GCPLIECLKIIDCRG--LKSLEF--LNLGKLSKFMVRNEDRLA------RVSI 104 (301)
Q Consensus 37 ~~~sLk~L~L~~c~i~d~~L~~Lis--~Cp~LE~L~L~~C~~--l~~L~i--~~~~~Lk~L~i~~C~~l~------~i~i 104 (301)
+...++.+.+.++.+.+..+..+.. +++.|++|+++++.- ...-.+ .++++|+.|+++++.--. ...+
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 3455889999999888755554432 456799999998752 211122 456788888888775111 0111
Q ss_pred -ecCceeEEEEcCCCC-CC-ccccccccccceEeecccccchH-HHHH--HhccCCCccEEEe
Q 043541 105 -CGPNVRLVDISSLHA-PC-GINVALCKNLKEFKLFKISITNE-WLCN--QFSELPFLEYVEI 161 (301)
Q Consensus 105 -~ap~L~~f~~~g~~~-~~-~i~~~~c~~Lk~L~L~~~~It~~-~l~~--L~~~cp~LE~L~L 161 (301)
..++|+++...+..- .. ...+.++++|+.|+++++.++.+ .+.. .+.++++|+.|++
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L 204 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLAL 204 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBC
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEEC
Confidence 467888888877651 11 23466788888888888875543 3322 2357788888887
No 66
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.95 E-value=2.3e-05 Score=77.90 Aligned_cols=195 Identities=12% Similarity=0.069 Sum_probs=103.2
Q ss_pred eeeeecceecccCccccCCC-C-CCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEEcCCCCCccEE
Q 043541 14 SRLVLSKYIPQTYCKLDSHT-R-NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLEFLNLGKLSKF 91 (301)
Q Consensus 14 ~~~~~~~~~~~~~C~l~~~~-~-~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~i~~~~~Lk~L 91 (301)
..+|-=+++.+++|.+..-. . ..++++|+.|+|.++.+.+. ....+.+++.|+.|+|+++ .+..+.+..+++|+.|
T Consensus 120 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~~L 197 (597)
T 3oja_B 120 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHA 197 (597)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCCEEECTTS-CCSBCCGGGCTTCSEE
T ss_pred cCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC-ChhhhhcCCcCcEEECcCC-CCCCcChhhhhhhhhh
Confidence 34454567888888876522 2 25689999999999987541 1123467899999999886 3333334445555555
Q ss_pred EEEeeC------------------CCceeEe-ecCceeEEEEcCCCCCCccccccccccceEeecccccchHHHHHHhcc
Q 043541 92 MVRNED------------------RLARVSI-CGPNVRLVDISSLHAPCGINVALCKNLKEFKLFKISITNEWLCNQFSE 152 (301)
Q Consensus 92 ~i~~C~------------------~l~~i~i-~ap~L~~f~~~g~~~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~ 152 (301)
+++++. .+..+.- ..++|+.+...+....-...+..+++|+.|+++++.+++. ....+.+
T Consensus 198 ~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~ 276 (597)
T 3oja_B 198 NVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKI-MYHPFVK 276 (597)
T ss_dssp ECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEE-ESGGGTT
T ss_pred hcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCC-CHHHhcC
Confidence 555431 1111111 1245555655554411122456667777777777665432 1122455
Q ss_pred CCCccEEEe----eeecc--------cceEEeccCCCceeEE---ecCCCeeEEEEccceE--EecCCccccceEEE
Q 043541 153 LPFLEYVEI----FRCMK--------IRKLLVRSCNTLDEFK---LDTPNLSVFDYEGDMV--SFSSNALALSETSL 212 (301)
Q Consensus 153 cp~LE~L~L----~~~l~--------I~~L~l~~C~~L~~i~---i~aPnL~sf~y~g~~~--~~~~~~~~l~~~~l 212 (301)
+++|+.|++ +..+. +..|.++++. ++.+. -..|+|..+...++.+ +.+...+.+..+++
T Consensus 277 l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l 352 (597)
T 3oja_B 277 MQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTL 352 (597)
T ss_dssp CSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEEC
T ss_pred ccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEe
Confidence 666777766 21111 1144554442 22111 1235666666666554 43444444555444
No 67
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.95 E-value=7.5e-06 Score=78.38 Aligned_cols=145 Identities=14% Similarity=0.060 Sum_probs=99.6
Q ss_pred eeeeecceecccCccccCC--CCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCc
Q 043541 14 SRLVLSKYIPQTYCKLDSH--TRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKL 88 (301)
Q Consensus 14 ~~~~~~~~~~~~~C~l~~~--~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~L 88 (301)
..++-=+++.++++.+..- ....++++|+.|+|.++.+.. .......+++.|++|+|+++ .+..+. +.++++|
T Consensus 96 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 173 (452)
T 3zyi_A 96 RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV-IPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSL 173 (452)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB-CCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTC
T ss_pred CCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc-cChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcc
Confidence 3344446777777776541 223568999999999998753 11123457899999999986 455552 4467889
Q ss_pred cEEEEEeeCCCceeEe----ecCceeEEEEcCCCCCCccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 89 SKFMVRNEDRLARVSI----CGPNVRLVDISSLHAPCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 89 k~L~i~~C~~l~~i~i----~ap~L~~f~~~g~~~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
+.|++++|..++.+.- ..++|+.++..+......-.+..+++|+.|+|+++.+++- ....+.+++.|+.|.+
T Consensus 174 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L 249 (452)
T 3zyi_A 174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEI-RPGSFHGLSSLKKLWV 249 (452)
T ss_dssp CEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEE-CGGGGTTCTTCCEEEC
T ss_pred cEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCccc-CcccccCccCCCEEEe
Confidence 9999998887776653 3578899988877522112467788999999988876542 1234567788888887
No 68
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.94 E-value=6.9e-06 Score=78.36 Aligned_cols=144 Identities=15% Similarity=0.115 Sum_probs=97.9
Q ss_pred eeeecceecccCccccCC--CCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCcc
Q 043541 15 RLVLSKYIPQTYCKLDSH--TRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLS 89 (301)
Q Consensus 15 ~~~~~~~~~~~~C~l~~~--~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk 89 (301)
.++-=+++.++++.+..- ....++++|++|+|.++.+.+ .....+.+++.|++|+|+++ .+..+. +.++++|+
T Consensus 86 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~ 163 (440)
T 3zyj_A 86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT-IPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLR 163 (440)
T ss_dssp SCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSS-CCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCC
T ss_pred CCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCe-eCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccC
Confidence 334346677788876541 123568999999999987753 11123467889999999886 455542 45678899
Q ss_pred EEEEEeeCCCceeEe----ecCceeEEEEcCCCCCCccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 90 KFMVRNEDRLARVSI----CGPNVRLVDISSLHAPCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 90 ~L~i~~C~~l~~i~i----~ap~L~~f~~~g~~~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
.|++++|..+..+.- ..++|++++..+..-...-.+..+++|+.|+|+++.+++- ....+.++++|+.|.+
T Consensus 164 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L 238 (440)
T 3zyj_A 164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAI-RPGSFQGLMHLQKLWM 238 (440)
T ss_dssp EEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEE-CTTTTTTCTTCCEEEC
T ss_pred EeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCcc-ChhhhccCccCCEEEC
Confidence 999998877666543 3578888888877522112467788899999988876642 1234567788888887
No 69
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.90 E-value=3.8e-05 Score=79.48 Aligned_cols=122 Identities=13% Similarity=0.019 Sum_probs=70.6
Q ss_pred eecccCccccC--CCCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE---EcCCCCCccEEEEEe
Q 043541 21 YIPQTYCKLDS--HTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL---EFLNLGKLSKFMVRN 95 (301)
Q Consensus 21 ~~~~~~C~l~~--~~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L---~i~~~~~Lk~L~i~~ 95 (301)
++.++++.+.. +....++++|+.|+|.++......-..-+.++++|+.|+|+++ .+..+ .+.++++|+.|++++
T Consensus 28 ~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~ 106 (844)
T 3j0a_A 28 RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYF 106 (844)
T ss_dssp EEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-CCCEECTTSSCSCSSCCCEECTT
T ss_pred EEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-cCcccCHhHccCCcccCEeeCcC
Confidence 45556665543 1233567788888887774321110122457777888888775 34444 344577788888877
Q ss_pred eCC----CceeEe-ecCceeEEEEcCCC-CCC--ccccccccccceEeecccccch
Q 043541 96 EDR----LARVSI-CGPNVRLVDISSLH-APC--GINVALCKNLKEFKLFKISITN 143 (301)
Q Consensus 96 C~~----l~~i~i-~ap~L~~f~~~g~~-~~~--~i~~~~c~~Lk~L~L~~~~It~ 143 (301)
|.- +....+ ..++|+.++..+.. ... ...++.+++|+.|++.++.+++
T Consensus 107 n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 107 CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 641 111112 45778887777665 111 1246777888888887776543
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.90 E-value=6.1e-06 Score=75.21 Aligned_cols=159 Identities=15% Similarity=0.126 Sum_probs=91.2
Q ss_pred CCCCCcEEEecccccChHHHHHH-HhcCCcccEEeeecCCCceEE--EcCC-----CCCccEEEEEeeCCCceeE---e-
Q 043541 37 TLSSLRELGLFKCAANDEAIRDI-VAGCPLIECLKIIDCRGLKSL--EFLN-----LGKLSKFMVRNEDRLARVS---I- 104 (301)
Q Consensus 37 ~~~sLk~L~L~~c~i~d~~L~~L-is~Cp~LE~L~L~~C~~l~~L--~i~~-----~~~Lk~L~i~~C~~l~~i~---i- 104 (301)
++++|++|+|.++.+.+.....+ ..+++.|++|+|+++. +... .+.+ .++|+.|+++++. ++.+. +
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhc
Confidence 47778888888777653222222 3667778888887753 2211 0111 2677888877664 22211 1
Q ss_pred ecCceeEEEEcCCCCC----C--ccccccccccceEeecccccch--HHHHHHhccCCCccEEEe----eeec-------
Q 043541 105 CGPNVRLVDISSLHAP----C--GINVALCKNLKEFKLFKISITN--EWLCNQFSELPFLEYVEI----FRCM------- 165 (301)
Q Consensus 105 ~ap~L~~f~~~g~~~~----~--~i~~~~c~~Lk~L~L~~~~It~--~~l~~L~~~cp~LE~L~L----~~~l------- 165 (301)
..++|+.++..+.... . ...+..+++|+.|+++++.++. .....++.+++.|+.|++ ++..
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence 4567777777766411 1 1123677888888888888773 344456677888888888 2211
Q ss_pred ---ccceEEeccCCCceeEEecC-CCeeEEEEccceE
Q 043541 166 ---KIRKLLVRSCNTLDEFKLDT-PNLSVFDYEGDMV 198 (301)
Q Consensus 166 ---~I~~L~l~~C~~L~~i~i~a-PnL~sf~y~g~~~ 198 (301)
++.+|.++++. ++.+.-.. ++|+.+...++.+
T Consensus 251 ~l~~L~~L~Ls~N~-l~~ip~~~~~~L~~L~Ls~N~l 286 (312)
T 1wwl_A 251 WPSQLNSLNLSFTG-LKQVPKGLPAKLSVLDLSYNRL 286 (312)
T ss_dssp CCTTCCEEECTTSC-CSSCCSSCCSEEEEEECCSSCC
T ss_pred hcCCCCEEECCCCc-cChhhhhccCCceEEECCCCCC
Confidence 11156666552 23222111 5777777777654
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.90 E-value=6.5e-05 Score=75.71 Aligned_cols=31 Identities=13% Similarity=0.104 Sum_probs=14.4
Q ss_pred CCCcEEEecccccChHHHHHHHhcCCcccEEeeecC
Q 043541 39 SSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDC 74 (301)
Q Consensus 39 ~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C 74 (301)
++|+.|+|.++.+.. + -..+++|+.|+|+++
T Consensus 61 ~~L~~L~L~~N~l~~--l---p~~l~~L~~L~Ls~N 91 (622)
T 3g06_A 61 AHITTLVIPDNNLTS--L---PALPPELRTLEVSGN 91 (622)
T ss_dssp TTCSEEEECSCCCSC--C---CCCCTTCCEEEECSC
T ss_pred CCCcEEEecCCCCCC--C---CCcCCCCCEEEcCCC
Confidence 455555555554432 1 113455555555554
No 72
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.90 E-value=1.5e-05 Score=81.70 Aligned_cols=124 Identities=15% Similarity=0.189 Sum_probs=66.0
Q ss_pred CCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEEcCCCCCccEEEEEeeCC---Cce-eEeecCceeEE
Q 043541 37 TLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLEFLNLGKLSKFMVRNEDR---LAR-VSICGPNVRLV 112 (301)
Q Consensus 37 ~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~i~~~~~Lk~L~i~~C~~---l~~-i~i~ap~L~~f 112 (301)
++++|++|+|.++.+.+. +..-+.+++.|+.|++++|.-........+++|+.|++++|.- +.+ +.-.+++|+++
T Consensus 221 ~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L 299 (768)
T 3rgz_A 221 DCSALQHLDISGNKLSGD-FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299 (768)
T ss_dssp TCCSCCEEECCSSCCCSC-HHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEE
T ss_pred cCCCCCEEECcCCcCCCc-ccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEE
Confidence 456666666666655421 2223355666666666665321111112356677777766531 111 11113677777
Q ss_pred EEcCCC--CCCccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 113 DISSLH--APCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 113 ~~~g~~--~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
+..+.. ......++.+++|++|++.++.+++..-...+.+++.|+.|++
T Consensus 300 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~L 350 (768)
T 3rgz_A 300 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350 (768)
T ss_dssp ECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEEC
T ss_pred ECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeC
Confidence 776654 1223346777788888887776553322233456677777776
No 73
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.87 E-value=7.8e-06 Score=81.89 Aligned_cols=37 Identities=14% Similarity=0.065 Sum_probs=20.0
Q ss_pred cccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 125 VALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 125 ~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
+.++++|+.|++.++.+++..-...+.++++|+.|++
T Consensus 401 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L 437 (680)
T 1ziw_A 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 437 (680)
T ss_dssp TTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEEC
T ss_pred hhCCCCCCEEeCCCCcCccccCcccccCcccccEEec
Confidence 4556667777776666543222223345556666555
No 74
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.86 E-value=2.3e-05 Score=76.98 Aligned_cols=137 Identities=15% Similarity=0.111 Sum_probs=85.7
Q ss_pred ceecccCccccCCCCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE-----EcCCCCCccEEEEE
Q 043541 20 KYIPQTYCKLDSHTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL-----EFLNLGKLSKFMVR 94 (301)
Q Consensus 20 ~~~~~~~C~l~~~~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L-----~i~~~~~Lk~L~i~ 94 (301)
+++.++++.+.......++++|+.|+|.++.+.+... .-+.+++.|+.|+++++ .++.+ .+.++++|+.|+++
T Consensus 334 ~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~ 411 (562)
T 3a79_B 334 KMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVF-QGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVS 411 (562)
T ss_dssp SEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTT-TTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECT
T ss_pred eEEEccCCCcccccCccCCCCceEEECCCCccccchh-hhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECC
Confidence 4667777777542212568888999988887764221 22367888888888886 34332 24567888888888
Q ss_pred eeCC---Cce-eEeecCceeEEEEcCCCCCCccccccc-cccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 95 NEDR---LAR-VSICGPNVRLVDISSLHAPCGINVALC-KNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 95 ~C~~---l~~-i~i~ap~L~~f~~~g~~~~~~i~~~~c-~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
++.- +.. .....++|+.++..+..-. ...+... ++|+.|+++++.++ .+..-+.+++.|+.|++
T Consensus 412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~~L~~L~L~~N~l~--~ip~~~~~l~~L~~L~L 480 (562)
T 3a79_B 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLT-GSVFRCLPPKVKVLDLHNNRIM--SIPKDVTHLQALQELNV 480 (562)
T ss_dssp TSCCBSCCSSCCCCCCTTCCEEECCSSCCC-GGGGSSCCTTCSEEECCSSCCC--CCCTTTTSSCCCSEEEC
T ss_pred CCcCCCccChhhhcCcccCCEEECCCCCCC-cchhhhhcCcCCEEECCCCcCc--ccChhhcCCCCCCEEEC
Confidence 7641 211 1123578888888776511 1112233 68899999888876 23332337788888877
No 75
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.86 E-value=1.5e-05 Score=74.20 Aligned_cols=140 Identities=11% Similarity=0.102 Sum_probs=79.6
Q ss_pred ceecccCccccCCC------CCCCCC-CCcEEEecccccCh---HHHHHHHhcC-CcccEEeeecCCCceEE-------E
Q 043541 20 KYIPQTYCKLDSHT------RNVTLS-SLRELGLFKCAAND---EAIRDIVAGC-PLIECLKIIDCRGLKSL-------E 81 (301)
Q Consensus 20 ~~~~~~~C~l~~~~------~~~~~~-sLk~L~L~~c~i~d---~~L~~Lis~C-p~LE~L~L~~C~~l~~L-------~ 81 (301)
.++.+++|.+.... ...+++ +|++|+|+++.+.+ ..+..++..+ +.|++|+|++|. +... .
T Consensus 25 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~ 103 (362)
T 3goz_A 25 TSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDELVKT 103 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHH
T ss_pred eEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHHHHHH
Confidence 46677777776421 113466 78888888887765 3444444444 788888888874 2111 0
Q ss_pred cCCC-CCccEEEEEeeCCCceeEee---------cCceeEEEEcCCCCC-Cc-----ccccccc-ccceEeecccccch-
Q 043541 82 FLNL-GKLSKFMVRNEDRLARVSIC---------GPNVRLVDISSLHAP-CG-----INVALCK-NLKEFKLFKISITN- 143 (301)
Q Consensus 82 i~~~-~~Lk~L~i~~C~~l~~i~i~---------ap~L~~f~~~g~~~~-~~-----i~~~~c~-~Lk~L~L~~~~It~- 143 (301)
+.++ ++|+.|++++|. +++.... ..+|++++..++.-. .. ..+...+ +|++|+|+++.+++
T Consensus 104 l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 182 (362)
T 3goz_A 104 LAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK 182 (362)
T ss_dssp HHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred HHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchh
Confidence 2233 578888887764 2222211 247777777765411 00 0122333 77788887777654
Q ss_pred --HHHHHHhccCC-CccEEEe
Q 043541 144 --EWLCNQFSELP-FLEYVEI 161 (301)
Q Consensus 144 --~~l~~L~~~cp-~LE~L~L 161 (301)
.++...+..++ .|+.|++
T Consensus 183 ~~~~l~~~l~~~~~~L~~L~L 203 (362)
T 3goz_A 183 NCAELAKFLASIPASVTSLDL 203 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEEC
T ss_pred hHHHHHHHHHhCCCCCCEEEC
Confidence 33444555564 7777776
No 76
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.85 E-value=6.6e-05 Score=72.64 Aligned_cols=133 Identities=13% Similarity=0.068 Sum_probs=93.5
Q ss_pred eecccCccccCCCCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE---EcCCCCCccEEEEEeeC
Q 043541 21 YIPQTYCKLDSHTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL---EFLNLGKLSKFMVRNED 97 (301)
Q Consensus 21 ~~~~~~C~l~~~~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L---~i~~~~~Lk~L~i~~C~ 97 (301)
++.++++.+..-.... .++|+.|+|+++.+.+-. ..-+.+++.|+.|+|+++ .+..+ .+.++++|+.|+++++.
T Consensus 4 ~l~ls~n~l~~ip~~~-~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKDL-SQKTTILNISQNYISELW-TSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp EEECTTSCCSSCCCSC-CTTCSEEECCSSCCCCCC-HHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred eEecCCCCcccccccc-cccccEEECCCCcccccC-hhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCc
Confidence 5667777766422222 388999999999876421 123467899999999997 45555 35678899999999773
Q ss_pred CCceeEe-ecCceeEEEEcCCC-CC--CccccccccccceEeecccccchHHHHHHhccCCCc--cEEEe
Q 043541 98 RLARVSI-CGPNVRLVDISSLH-AP--CGINVALCKNLKEFKLFKISITNEWLCNQFSELPFL--EYVEI 161 (301)
Q Consensus 98 ~l~~i~i-~ap~L~~f~~~g~~-~~--~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~L--E~L~L 161 (301)
++.+.- ..++|++++..+.. .. ....++++++|++|+++++.+++.. +..++.| +.|++
T Consensus 81 -l~~lp~~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~L~L~~L~l 145 (520)
T 2z7x_B 81 -LVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS----VLPIAHLNISKVLL 145 (520)
T ss_dssp -CCEEECCCCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGG----GGGGTTSCEEEEEE
T ss_pred -eeecCccccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhh----ccccccceeeEEEe
Confidence 444432 56889999988776 22 2346888999999999999888743 3445666 77776
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.85 E-value=6.8e-06 Score=74.88 Aligned_cols=156 Identities=15% Similarity=0.127 Sum_probs=97.9
Q ss_pred CcEEEecccccCh----HHH-HH--HHhcCCcccEEeeecCCCceEE--Ec--CCCCCccEEEEEeeCCCcee--Ee-e-
Q 043541 41 LRELGLFKCAAND----EAI-RD--IVAGCPLIECLKIIDCRGLKSL--EF--LNLGKLSKFMVRNEDRLARV--SI-C- 105 (301)
Q Consensus 41 Lk~L~L~~c~i~d----~~L-~~--Lis~Cp~LE~L~L~~C~~l~~L--~i--~~~~~Lk~L~i~~C~~l~~i--~i-~- 105 (301)
|+.|+|++..+.+ ..+ .. -..+.+.|++|+|+++.--..+ .+ .++++|+.|+++++. ++.+ .+ .
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHH
Confidence 7888888776632 111 11 1126899999999997521111 22 567899999999874 2222 11 1
Q ss_pred ----cCceeEEEEcCCC-CCCc-cccccccccceEeecccccchH-HHH-HH-hccCCCccEEEe----eeec-------
Q 043541 106 ----GPNVRLVDISSLH-APCG-INVALCKNLKEFKLFKISITNE-WLC-NQ-FSELPFLEYVEI----FRCM------- 165 (301)
Q Consensus 106 ----ap~L~~f~~~g~~-~~~~-i~~~~c~~Lk~L~L~~~~It~~-~l~-~L-~~~cp~LE~L~L----~~~l------- 165 (301)
.++|++++..+.. .... ..++++++|+.|+++++.+++. .+. .+ +.+++.|+.|++ ++.+
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence 2899999998776 2222 3577899999999999986654 232 33 378999999998 3311
Q ss_pred -----ccceEEeccCCCcee-E--E--ecCCCeeEEEEccceE
Q 043541 166 -----KIRKLLVRSCNTLDE-F--K--LDTPNLSVFDYEGDMV 198 (301)
Q Consensus 166 -----~I~~L~l~~C~~L~~-i--~--i~aPnL~sf~y~g~~~ 198 (301)
++..|.++++. ++. . . ...++|+.+...++.+
T Consensus 224 ~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~N~l 265 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSFTGL 265 (312)
T ss_dssp HHTTCCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEECTTSCC
T ss_pred HhcCCCCCEEECCCCc-CCcccchhhhhhcCCCCEEECCCCcc
Confidence 12267777653 222 1 1 1236788888777654
No 78
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.83 E-value=1.1e-05 Score=71.15 Aligned_cols=136 Identities=16% Similarity=0.144 Sum_probs=84.6
Q ss_pred eecccCccccCCCCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCccEEEEEeeC
Q 043541 21 YIPQTYCKLDSHTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMVRNED 97 (301)
Q Consensus 21 ~~~~~~C~l~~~~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i~~C~ 97 (301)
.+..++..+..-.... .++|+.|+|.++.+.+-. ...+.+++.|++|+|+++ .+..+. +.++++|+.|+++++.
T Consensus 18 ~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 18 EVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLS-DATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQ 94 (251)
T ss_dssp EEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEecCCCCccccCCCC-CCCCCEEEccCCCcCccC-HhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCCc
Confidence 3455555554311112 467889999888775411 112457888999999885 343332 3457788888888763
Q ss_pred CCceeE----eecCceeEEEEcCCC-CCCcc-ccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 98 RLARVS----ICGPNVRLVDISSLH-APCGI-NVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 98 ~l~~i~----i~ap~L~~f~~~g~~-~~~~i-~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
++.+. -..++|++++..+.. ..... .+.++++|+.|+|+++.++.- -...+.++++|+.|++
T Consensus 95 -l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L 162 (251)
T 3m19_A 95 -LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI-PAGAFDKLTNLQTLSL 162 (251)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEEC
T ss_pred -ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc-CHHHcCcCcCCCEEEC
Confidence 33322 135788888887765 22222 357788999999998876631 1123566788888887
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.83 E-value=5.9e-06 Score=80.48 Aligned_cols=135 Identities=9% Similarity=0.015 Sum_probs=70.7
Q ss_pred eecccCccccCCCCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEE---cC-CCCCccEEEEEee
Q 043541 21 YIPQTYCKLDSHTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE---FL-NLGKLSKFMVRNE 96 (301)
Q Consensus 21 ~~~~~~C~l~~~~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~-~~~~Lk~L~i~~C 96 (301)
++.+++|.+.. .....+++|+.|+|.++.+.+.. ..-+.+++.|+.|+|+++ .+.... +. ++++|+.|+++++
T Consensus 103 ~L~L~~N~l~~-~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 103 TLHAANNNISR-VSCSRGQGKKNIYLANNKITMLR-DLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp EEECCSSCCCC-EEECCCSSCEEEECCSSCCCSGG-GBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EEECcCCcCCC-CCccccCCCCEEECCCCCCCCCC-chhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCC
Confidence 44555555543 22234677777777777664311 112245667777777665 333321 11 3566777766655
Q ss_pred CCCceeE--eecCceeEEEEcCCC-CCCccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 97 DRLARVS--ICGPNVRLVDISSLH-APCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 97 ~~l~~i~--i~ap~L~~f~~~g~~-~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
. ++.+. ...++|++++..+.. ......+.++++|+.|+++++.+++ +...+..++.|+.|++
T Consensus 180 ~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~l 244 (487)
T 3oja_A 180 F-IYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDL 244 (487)
T ss_dssp C-CCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEEC
T ss_pred c-cccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc--cchhhccCCCCCEEEc
Confidence 3 22221 135666666666554 2222235566667777776666552 2222445566666665
No 80
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.82 E-value=2.1e-05 Score=74.21 Aligned_cols=110 Identities=13% Similarity=0.165 Sum_probs=62.0
Q ss_pred CCCCCCcEEEecccccChHHHHHHHh-cCCcccEEeeecCC-------Cce----EEEcCCCCCccEEEEEeeCCCceeE
Q 043541 36 VTLSSLRELGLFKCAANDEAIRDIVA-GCPLIECLKIIDCR-------GLK----SLEFLNLGKLSKFMVRNEDRLARVS 103 (301)
Q Consensus 36 ~~~~sLk~L~L~~c~i~d~~L~~Lis-~Cp~LE~L~L~~C~-------~l~----~L~i~~~~~Lk~L~i~~C~~l~~i~ 103 (301)
...++|++|.|..+.+.+++++.++. .+|+|++|+|+.+. +++ .+...++|+|+.|++.+|..-.+..
T Consensus 190 ~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~ 269 (362)
T 2ra8_A 190 KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVV 269 (362)
T ss_dssp CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHH
T ss_pred ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHH
Confidence 34677888888777777777777764 67888888775321 121 1122235777777777654111000
Q ss_pred eecCceeEEEEcCCCCCCccccccccccceEeecccccchHHHHHHh---ccCCCccEEEe
Q 043541 104 ICGPNVRLVDISSLHAPCGINVALCKNLKEFKLFKISITNEWLCNQF---SELPFLEYVEI 161 (301)
Q Consensus 104 i~ap~L~~f~~~g~~~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~---~~cp~LE~L~L 161 (301)
........+++|++|+|+.+.+++.+...+. .+++.|+.|++
T Consensus 270 ----------------~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L 314 (362)
T 2ra8_A 270 ----------------EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM 314 (362)
T ss_dssp ----------------HHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEEC
T ss_pred ----------------HHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEEC
Confidence 0000112356677777766667776555443 34666777666
No 81
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.82 E-value=4.6e-05 Score=78.88 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=17.3
Q ss_pred cccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 125 VALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 125 ~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
+..+++|+.|++.++.|+... ...+.++++|+.|++
T Consensus 286 ~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L 321 (844)
T 3j0a_A 286 FETLKDLKVLNLAYNKINKIA-DEAFYGLDNLQVLNL 321 (844)
T ss_dssp SSSCCCCCEEEEESCCCCEEC-TTTTTTCSSCCEEEE
T ss_pred hhcCCCCCEEECCCCcCCCCC-hHHhcCCCCCCEEEC
Confidence 344555555555555543211 112344556666655
No 82
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.81 E-value=6.9e-06 Score=67.71 Aligned_cols=118 Identities=14% Similarity=0.123 Sum_probs=83.1
Q ss_pred ceecccCcccc--C-CCCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceE-E--EcCCCCCccEEEE
Q 043541 20 KYIPQTYCKLD--S-HTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKS-L--EFLNLGKLSKFMV 93 (301)
Q Consensus 20 ~~~~~~~C~l~--~-~~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~-L--~i~~~~~Lk~L~i 93 (301)
+++.+++|.+. . +....++++|+.|+|.++.+.+- .-+.+++.|+.|+++++. +.. + .+.++++|+.|++
T Consensus 27 ~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 27 RELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp SEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCCEEEC
T ss_pred CEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCc-CchHHHHHHhhCCCCCEEec
Confidence 46777888876 2 12235689999999999987643 456788999999999874 322 2 1223789999999
Q ss_pred EeeCCCceeE-----eecCceeEEEEcCCC-CCCcc----ccccccccceEeecccccc
Q 043541 94 RNEDRLARVS-----ICGPNVRLVDISSLH-APCGI----NVALCKNLKEFKLFKISIT 142 (301)
Q Consensus 94 ~~C~~l~~i~-----i~ap~L~~f~~~g~~-~~~~i----~~~~c~~Lk~L~L~~~~It 142 (301)
+++. ++.+. -..++|+.++..+.. ..... .+..+++|+.|++.++.++
T Consensus 103 s~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 103 SGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp BSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred cCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 9884 33321 246889999998876 22222 5778999999999888643
No 83
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.79 E-value=1.4e-05 Score=71.25 Aligned_cols=136 Identities=15% Similarity=0.084 Sum_probs=81.2
Q ss_pred eecccCccccCCCCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCccEEEEEeeC
Q 043541 21 YIPQTYCKLDSHTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMVRNED 97 (301)
Q Consensus 21 ~~~~~~C~l~~~~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i~~C~ 97 (301)
++..++..+..-... -.++|++|+|+++.+.+-. .....+++.|++|+|+++ .+..+. +.++++|+.|+++++.
T Consensus 20 ~l~~~~~~l~~ip~~-~~~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 20 SVDCSSKKLTAIPSN-IPADTKKLDLQSNKLSSLP-SKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNK 96 (270)
T ss_dssp EEECTTSCCSSCCSC-CCTTCSEEECCSSCCSCCC-TTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSC
T ss_pred EEEccCCCCCccCCC-CCCCCCEEECcCCCCCeeC-HHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCc
Confidence 455555555431111 1356888888888765311 112456788888888875 343332 2446788888888663
Q ss_pred CCceeE----eecCceeEEEEcCCC-CCC-ccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 98 RLARVS----ICGPNVRLVDISSLH-APC-GINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 98 ~l~~i~----i~ap~L~~f~~~g~~-~~~-~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
++.+. -..++|+++...+.. ... ...+.++++|+.|++.++.++.-. ...+..+++|+.|++
T Consensus 97 -l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L 164 (270)
T 2o6q_A 97 -LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP-KGVFDKLTSLKELRL 164 (270)
T ss_dssp -CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEEC
T ss_pred -CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC-HhHccCCcccceeEe
Confidence 33322 135778888877665 222 123577888888888888765311 123466788888877
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.79 E-value=1.4e-05 Score=71.22 Aligned_cols=138 Identities=19% Similarity=0.169 Sum_probs=95.1
Q ss_pred ceecccCccccCCC--CCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCccEEEEE
Q 043541 20 KYIPQTYCKLDSHT--RNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMVR 94 (301)
Q Consensus 20 ~~~~~~~C~l~~~~--~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i~ 94 (301)
+++.++++.+..-. ...++++|++|+|.++.+.+ .......+++.|++|+|+++. +..+. +.++++|+.|+++
T Consensus 40 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp SEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-CCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECC
T ss_pred CEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-eChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECC
Confidence 56788888776522 23569999999999998753 111234678999999999863 44332 3457899999999
Q ss_pred eeCCCceeE----eecCceeEEEEcCCC-CCCcc-ccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 95 NEDRLARVS----ICGPNVRLVDISSLH-APCGI-NVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 95 ~C~~l~~i~----i~ap~L~~f~~~g~~-~~~~i-~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
++. ++.+. -..++|++++..+.. ..... .+.++++|+.|++.++.++.-. ...+.+++.|+.|++
T Consensus 118 ~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L 188 (270)
T 2o6q_A 118 RNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP-EGAFDKLTELKTLKL 188 (270)
T ss_dssp SSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEEC
T ss_pred CCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC-hhHhccCCCcCEEEC
Confidence 764 33322 145889999998775 22222 3678899999999998765411 123466788888887
No 85
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.77 E-value=2.3e-05 Score=77.88 Aligned_cols=54 Identities=17% Similarity=0.263 Sum_probs=22.5
Q ss_pred CCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE---EcCCCCCccEEEEEee
Q 043541 39 SSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL---EFLNLGKLSKFMVRNE 96 (301)
Q Consensus 39 ~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L---~i~~~~~Lk~L~i~~C 96 (301)
++|+.|+|.++.+++. ..+.+++.|+.|+|+++ .+..+ .+.++++|+.|+++++
T Consensus 232 ~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N 288 (597)
T 3oja_B 232 VELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNN 288 (597)
T ss_dssp SCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECTTS
T ss_pred CCCCEEECCCCCCCCC---hhhccCCCCCEEECCCC-ccCCCCHHHhcCccCCCEEECCCC
Confidence 3444444444444331 12334455555555543 22222 1233444555555443
No 86
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.77 E-value=4.4e-06 Score=78.90 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=16.5
Q ss_pred cccccceEeecccccchHHHHH---HhccCCCccEEEe
Q 043541 127 LCKNLKEFKLFKISITNEWLCN---QFSELPFLEYVEI 161 (301)
Q Consensus 127 ~c~~Lk~L~L~~~~It~~~l~~---L~~~cp~LE~L~L 161 (301)
.+++|++|+|+++.|++.+... .+...+.|+.|++
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~L 218 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNV 218 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEEC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEEC
Confidence 3445555555555555544322 2334445555544
No 87
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.76 E-value=3.1e-06 Score=76.43 Aligned_cols=143 Identities=15% Similarity=0.123 Sum_probs=93.2
Q ss_pred eeeeecceecccCccccCC----CCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE----EcCCC
Q 043541 14 SRLVLSKYIPQTYCKLDSH----TRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL----EFLNL 85 (301)
Q Consensus 14 ~~~~~~~~~~~~~C~l~~~----~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L----~i~~~ 85 (301)
..++==+++.++++.+... ....++++|+.|+|+++.+.+ +..-+.+++.|++|+++++. +..+ .+.++
T Consensus 49 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l 125 (306)
T 2z66_A 49 DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSL 125 (306)
T ss_dssp TTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEETCTTCCEEECTTSE-EESSTTTTTTTTC
T ss_pred hccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc--ChhhcCCCCCCCEEECCCCc-ccccccchhhhhc
Confidence 3344445677777776521 122458999999999997653 11115578999999998863 2222 23457
Q ss_pred CCccEEEEEeeCCCceeE---e-ecCceeEEEEcCCCC-C--CccccccccccceEeecccccchHHHHHHhccCCCccE
Q 043541 86 GKLSKFMVRNEDRLARVS---I-CGPNVRLVDISSLHA-P--CGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEY 158 (301)
Q Consensus 86 ~~Lk~L~i~~C~~l~~i~---i-~ap~L~~f~~~g~~~-~--~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~ 158 (301)
++|+.|+++++. ++.+. + ..++|+++...+... . ....+..+++|+.|+++++.+++.. ...+.+++.|+.
T Consensus 126 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~ 203 (306)
T 2z66_A 126 RNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS-PTAFNSLSSLQV 203 (306)
T ss_dssp TTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCE
T ss_pred cCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcC-HHHhcCCCCCCE
Confidence 889999998774 22211 1 357889988877651 1 2335778889999999998876421 233466788888
Q ss_pred EEe
Q 043541 159 VEI 161 (301)
Q Consensus 159 L~L 161 (301)
|++
T Consensus 204 L~L 206 (306)
T 2z66_A 204 LNM 206 (306)
T ss_dssp EEC
T ss_pred EEC
Confidence 887
No 88
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.76 E-value=0.0001 Score=71.64 Aligned_cols=139 Identities=14% Similarity=0.162 Sum_probs=70.2
Q ss_pred ceecccCccccCC--CCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE----EcCCCCCccEEEE
Q 043541 20 KYIPQTYCKLDSH--TRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL----EFLNLGKLSKFMV 93 (301)
Q Consensus 20 ~~~~~~~C~l~~~--~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L----~i~~~~~Lk~L~i 93 (301)
+++.++++.+... ....++++|++|+|+++.+.+. ....+.+++.|++|+++++. +..+ .+.++++|+.|++
T Consensus 53 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L 130 (549)
T 2z81_A 53 QVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRI 130 (549)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEE
T ss_pred cEEECCCCCcCccChhhccccccCCEEECCCCccCcc-CHHHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEEC
Confidence 3444444444321 1123455566666666555431 11123456666666666652 2211 2345677788888
Q ss_pred EeeCCCceeE---e-ecCceeEEEEcCCCCC--CccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 94 RNEDRLARVS---I-CGPNVRLVDISSLHAP--CGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 94 ~~C~~l~~i~---i-~ap~L~~f~~~g~~~~--~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
+++..+..+. + ..++|+.++..+.... ....++.+++|++|++..+.++.- -...+..++.|+.|++
T Consensus 131 ~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L 203 (549)
T 2z81_A 131 GNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL-LEIFADILSSVRYLEL 203 (549)
T ss_dssp EESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTH-HHHHHHSTTTBSEEEE
T ss_pred CCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccccc-chhhHhhcccccEEEc
Confidence 7775444442 1 3467777776655411 222455566677777766554321 1112344666776666
No 89
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.74 E-value=2.7e-05 Score=69.17 Aligned_cols=122 Identities=16% Similarity=0.198 Sum_probs=87.2
Q ss_pred ceecccCccccCCC--CCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCccEEEEE
Q 043541 20 KYIPQTYCKLDSHT--RNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMVR 94 (301)
Q Consensus 20 ~~~~~~~C~l~~~~--~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i~ 94 (301)
+++.++++.+..-. ...++++|+.|+|+++.+.+-. .....+++.|+.|+|+++ .+..+. +.++++|+.|+++
T Consensus 31 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp CEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECT
T ss_pred cEEECCCCcccccCHhHhccccCCcEEECCCCcCCccC-HHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEEECC
Confidence 56778888776411 3456899999999999876411 113467899999999986 455543 4568899999998
Q ss_pred eeC--CCceeEe-ecCceeEEEEcCCC-CC--CccccccccccceEeecccccch
Q 043541 95 NED--RLARVSI-CGPNVRLVDISSLH-AP--CGINVALCKNLKEFKLFKISITN 143 (301)
Q Consensus 95 ~C~--~l~~i~i-~ap~L~~f~~~g~~-~~--~~i~~~~c~~Lk~L~L~~~~It~ 143 (301)
++. .+....+ ..++|++++..+.. .. ....+.++++|+.|+++++.+++
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence 774 2322223 46899999998775 22 33467889999999999998664
No 90
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.72 E-value=1.6e-05 Score=73.89 Aligned_cols=141 Identities=14% Similarity=0.073 Sum_probs=92.7
Q ss_pred cceecccCccccCCCC--CCC-----CCCCcEEEecccccCh---HHHHHHHhcC-CcccEEeeecCCCceEEE------
Q 043541 19 SKYIPQTYCKLDSHTR--NVT-----LSSLRELGLFKCAAND---EAIRDIVAGC-PLIECLKIIDCRGLKSLE------ 81 (301)
Q Consensus 19 ~~~~~~~~C~l~~~~~--~~~-----~~sLk~L~L~~c~i~d---~~L~~Lis~C-p~LE~L~L~~C~~l~~L~------ 81 (301)
=+++.+++|.+..... ... +++|++|+|+++.+++ ..+...+..+ +.|++|+|+++. +....
T Consensus 53 L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~ 131 (362)
T 3goz_A 53 VTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQ 131 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHH
T ss_pred eeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHH
Confidence 3678899998875210 011 3899999999999875 5566666666 899999999975 32211
Q ss_pred -cCC-CCCccEEEEEeeCCCceeEe--------ec-CceeEEEEcCCCC-CCcc-----ccccc-cccceEeecccccch
Q 043541 82 -FLN-LGKLSKFMVRNEDRLARVSI--------CG-PNVRLVDISSLHA-PCGI-----NVALC-KNLKEFKLFKISITN 143 (301)
Q Consensus 82 -i~~-~~~Lk~L~i~~C~~l~~i~i--------~a-p~L~~f~~~g~~~-~~~i-----~~~~c-~~Lk~L~L~~~~It~ 143 (301)
+.+ +.+|+.|++++|. +++... .. ++|++++..++.- .... .+..+ ++|+.|+|+++.|++
T Consensus 132 ~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 132 AFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp HHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 222 3589999999874 222111 12 4899999888751 1110 23344 599999999999887
Q ss_pred HHHHH---Hhcc-CCCccEEEe
Q 043541 144 EWLCN---QFSE-LPFLEYVEI 161 (301)
Q Consensus 144 ~~l~~---L~~~-cp~LE~L~L 161 (301)
..... .+.. .+.|+.|++
T Consensus 211 ~~~~~l~~~l~~~~~~L~~L~L 232 (362)
T 3goz_A 211 KSYAELAYIFSSIPNHVVSLNL 232 (362)
T ss_dssp SCHHHHHHHHHHSCTTCCEEEC
T ss_pred hHHHHHHHHHhcCCCCceEEEC
Confidence 55443 3333 568999988
No 91
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.70 E-value=2.3e-05 Score=76.77 Aligned_cols=119 Identities=18% Similarity=0.242 Sum_probs=48.6
Q ss_pred CCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCccEEEEEeeCCCceeEe----ecCceeEE
Q 043541 40 SLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDRLARVSI----CGPNVRLV 112 (301)
Q Consensus 40 sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i~~C~~l~~i~i----~ap~L~~f 112 (301)
++++|+|++..++.- -..-..+++.|+.|+|++| +++.+. +.++++|++|+++++. ++.+.- ..++|+++
T Consensus 53 ~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 53 STKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp TCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEE
T ss_pred CCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEE
Confidence 455555555544320 0011234555555555554 333332 2334455555555432 333221 12445555
Q ss_pred EEcCCC-CCCc-cccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 113 DISSLH-APCG-INVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 113 ~~~g~~-~~~~-i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
+..+.. .... ..++++++|+.|++.++.++.-.....+.+++.|+.|++
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 180 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 180 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcc
Confidence 444432 1111 124444555555555544433222233344444555444
No 92
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.68 E-value=0.00032 Score=67.53 Aligned_cols=113 Identities=12% Similarity=0.108 Sum_probs=56.6
Q ss_pred CCCcEEEecccccChHHHHHHHhcCCcccEEeeecCC---------CceEE-----------EcCCCCCccEEEEEeeCC
Q 043541 39 SSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCR---------GLKSL-----------EFLNLGKLSKFMVRNEDR 98 (301)
Q Consensus 39 ~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~---------~l~~L-----------~i~~~~~Lk~L~i~~C~~ 98 (301)
++|++|+|.++.+.+ +.+ +.+++.|++|+++++. .++.| .+.++++|+.|+++++.
T Consensus 131 ~~L~~L~L~~n~l~~--lp~-~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~- 206 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK--LPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNS- 206 (454)
T ss_dssp TTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC-
T ss_pred CCCCEEECcCCCCCC--Ccc-cCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCc-
Confidence 466666666665543 112 4455666666665542 01112 12345556666666543
Q ss_pred CceeEeecCceeEEEEcCCC-CCCccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 99 LARVSICGPNVRLVDISSLH-APCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 99 l~~i~i~ap~L~~f~~~g~~-~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
++.+.-..++|+.++..+.. .... .++.+++|+.|+++++.+++ +....+.|+.|++
T Consensus 207 l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~-----l~~~~~~L~~L~l 264 (454)
T 1jl5_A 207 LKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKT-----LPDLPPSLEALNV 264 (454)
T ss_dssp CSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-----CCSCCTTCCEEEC
T ss_pred CCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCc-----ccccccccCEEEC
Confidence 22222223466666666554 2122 35666777777777766543 1112355666665
No 93
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.68 E-value=1.3e-05 Score=80.32 Aligned_cols=120 Identities=17% Similarity=0.135 Sum_probs=60.1
Q ss_pred CCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE---EcCCCCCccEEEEEeeCCCceeE----eecCceeE
Q 043541 39 SSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL---EFLNLGKLSKFMVRNEDRLARVS----ICGPNVRL 111 (301)
Q Consensus 39 ~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L---~i~~~~~Lk~L~i~~C~~l~~i~----i~ap~L~~ 111 (301)
++|+.|+|.++.+.+.. ..-..+++.|+.|+++++.--..+ .+.++++|+.|++++|. +..+. ...|+|+.
T Consensus 381 ~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~ 458 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIE-SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQR 458 (680)
T ss_dssp SCCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCE
T ss_pred CcCceEECCCCCCCeEC-hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeChhhhhcCccccc
Confidence 56777777777664311 112346777777777775321111 23456667777776653 11110 12456666
Q ss_pred EEEcCCCC----CCccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 112 VDISSLHA----PCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 112 f~~~g~~~----~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
+...+... .....+.++++|+.|++.++.++. .....+.+++.|+.|++
T Consensus 459 L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L 511 (680)
T 1ziw_A 459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDL 511 (680)
T ss_dssp EECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEEC
T ss_pred chhccccccccccCCcccccCCCCCEEECCCCCCCc-CChhhhccccccCEEeC
Confidence 66554431 112234555666666666655442 01122344555665555
No 94
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.67 E-value=2.3e-05 Score=71.58 Aligned_cols=122 Identities=13% Similarity=0.135 Sum_probs=72.0
Q ss_pred CCCcEEEecccccCh-HHHHHHHhcCCcccEEeeecCCCceE-E--EcCCCCCccEEEEEeeCCCceeE--e-ecCceeE
Q 043541 39 SSLRELGLFKCAAND-EAIRDIVAGCPLIECLKIIDCRGLKS-L--EFLNLGKLSKFMVRNEDRLARVS--I-CGPNVRL 111 (301)
Q Consensus 39 ~sLk~L~L~~c~i~d-~~L~~Lis~Cp~LE~L~L~~C~~l~~-L--~i~~~~~Lk~L~i~~C~~l~~i~--i-~ap~L~~ 111 (301)
.+++.|+|.++.+.+ ..+..-+.+++.|+.|+++++..+.. + .+.++++|+.|+++++.--..+. + ..++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 567888888876643 02223455678888888876444431 1 24456778888887764111111 1 3467777
Q ss_pred EEEcCCC-C-CCccccccccccceEeecccccchHHHHHHhccCC-CccEEEe
Q 043541 112 VDISSLH-A-PCGINVALCKNLKEFKLFKISITNEWLCNQFSELP-FLEYVEI 161 (301)
Q Consensus 112 f~~~g~~-~-~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp-~LE~L~L 161 (301)
++..+.. . .....+..+++|++|++.++.+++.. ...+..++ .|+.|++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~~L~~L~L 181 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI-PDSYGSFSKLFTSMTI 181 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEEC-CGGGGCCCTTCCEEEC
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcC-CHHHhhhhhcCcEEEC
Confidence 7776654 1 23335677788888888877765322 12234444 7777776
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.65 E-value=2.2e-05 Score=66.95 Aligned_cols=120 Identities=14% Similarity=0.137 Sum_probs=69.9
Q ss_pred CCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCccEEEEEeeCCCceeE----eecCcee
Q 043541 38 LSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDRLARVS----ICGPNVR 110 (301)
Q Consensus 38 ~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i~~C~~l~~i~----i~ap~L~ 110 (301)
.++|+.|+|.++.+.+ .......+++.|++|+++++ .++.+. +.++++|+.|+++++. ++.+. -..++|+
T Consensus 27 ~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~ 103 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLK 103 (208)
T ss_dssp CTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred CCCCcEEEcCCCccCc-CChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCC
Confidence 5567777777776643 11122356777777777775 343332 2446777777777653 22221 1346777
Q ss_pred EEEEcCCC-CCCc-cccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 111 LVDISSLH-APCG-INVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 111 ~f~~~g~~-~~~~-i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
.++..+.. .... ..+..+++|+.|++.++.+++ .....+..++.|+.|++
T Consensus 104 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l 155 (208)
T 2o6s_A 104 ELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWL 155 (208)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEEC
T ss_pred EEEcCCCcCcccCHhHhccCCcCCEEECCCCccce-eCHHHhccCCCccEEEe
Confidence 77776654 2221 125677788888888877653 11233456777777776
No 96
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.65 E-value=2.2e-05 Score=71.60 Aligned_cols=142 Identities=13% Similarity=0.151 Sum_probs=96.4
Q ss_pred eeecceecccCccccCCCCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCC----ceEEEcCCCCCccEE
Q 043541 16 LVLSKYIPQTYCKLDSHTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRG----LKSLEFLNLGKLSKF 91 (301)
Q Consensus 16 ~~~~~~~~~~~C~l~~~~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~----l~~L~i~~~~~Lk~L 91 (301)
++==+++.++++.+.. -...-+++|++|++.++.+.+- ......+++.|+.|+++++.- ...-.+.++++|+.|
T Consensus 99 l~~L~~L~Ls~n~l~~-l~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L 176 (330)
T 1xku_A 99 LVKLERLYLSKNQLKE-LPEKMPKTLQELRVHENEITKV-RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176 (330)
T ss_dssp CTTCCEEECCSSCCSB-CCSSCCTTCCEEECCSSCCCBB-CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred CCCCCEEECCCCcCCc-cChhhcccccEEECCCCccccc-CHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEE
Confidence 3444677788887764 2222358999999999987641 223457899999999998742 111134567899999
Q ss_pred EEEeeCCCceeEe-ecCceeEEEEcCCC-CCC-ccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 92 MVRNEDRLARVSI-CGPNVRLVDISSLH-APC-GINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 92 ~i~~C~~l~~i~i-~ap~L~~f~~~g~~-~~~-~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
+++++. ++.+.- ..++|+.++..+.. ... ...+.++++|+.|+++++.+++.. ...+..++.|+.|++
T Consensus 177 ~l~~n~-l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L 247 (330)
T 1xku_A 177 RIADTN-ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD-NGSLANTPHLRELHL 247 (330)
T ss_dssp ECCSSC-CCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC-TTTGGGSTTCCEEEC
T ss_pred ECCCCc-cccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC-hhhccCCCCCCEEEC
Confidence 998774 333221 13789999988765 212 235778899999999999876421 123567888998887
No 97
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.63 E-value=6e-05 Score=68.69 Aligned_cols=138 Identities=14% Similarity=0.090 Sum_probs=93.2
Q ss_pred eeeeecceecccCccccCC--CCCCCCCCCcEEEecccccCh--HHHHHHHhcCCcccEEeeecCCCceEE---EcCCCC
Q 043541 14 SRLVLSKYIPQTYCKLDSH--TRNVTLSSLRELGLFKCAAND--EAIRDIVAGCPLIECLKIIDCRGLKSL---EFLNLG 86 (301)
Q Consensus 14 ~~~~~~~~~~~~~C~l~~~--~~~~~~~sLk~L~L~~c~i~d--~~L~~Lis~Cp~LE~L~L~~C~~l~~L---~i~~~~ 86 (301)
..++==+++.+++|.+..- ....++++|++|+|.++.+.+ .. -.+.|++|+++++. +..+ .+.+++
T Consensus 73 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~------~~~~L~~L~l~~n~-l~~~~~~~~~~l~ 145 (330)
T 1xku_A 73 KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK------MPKTLQELRVHENE-ITKVRKSVFNGLN 145 (330)
T ss_dssp TTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS------CCTTCCEEECCSSC-CCBBCHHHHTTCT
T ss_pred ccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChh------hcccccEEECCCCc-ccccCHhHhcCCc
Confidence 3344446788888887642 234568999999999998753 21 23789999999873 4333 246789
Q ss_pred CccEEEEEeeCC----CceeEe-ecCceeEEEEcCCC-CCCccccccccccceEeecccccchHHHHHHhccCCCccEEE
Q 043541 87 KLSKFMVRNEDR----LARVSI-CGPNVRLVDISSLH-APCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVE 160 (301)
Q Consensus 87 ~Lk~L~i~~C~~----l~~i~i-~ap~L~~f~~~g~~-~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~ 160 (301)
+|+.|+++++.- +..-.+ ..++|+.+...+.. ..... ...++|+.|++.++.+++.. ...+.++++|+.|+
T Consensus 146 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~ 222 (330)
T 1xku_A 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--GLPPSLTELHLDGNKITKVD-AASLKGLNNLAKLG 222 (330)
T ss_dssp TCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS--SCCTTCSEEECTTSCCCEEC-TGGGTTCTTCCEEE
T ss_pred cccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc--cccccCCEEECCCCcCCccC-HHHhcCCCCCCEEE
Confidence 999999997742 111111 35889999988765 22221 22379999999999876521 23456789999998
Q ss_pred e
Q 043541 161 I 161 (301)
Q Consensus 161 L 161 (301)
+
T Consensus 223 L 223 (330)
T 1xku_A 223 L 223 (330)
T ss_dssp C
T ss_pred C
Confidence 8
No 98
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.62 E-value=9.1e-05 Score=66.98 Aligned_cols=141 Identities=13% Similarity=0.045 Sum_probs=89.0
Q ss_pred eeecceecccCccccCCCCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEEc-CCCCCccEEEEE
Q 043541 16 LVLSKYIPQTYCKLDSHTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLEF-LNLGKLSKFMVR 94 (301)
Q Consensus 16 ~~~~~~~~~~~C~l~~~~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~i-~~~~~Lk~L~i~ 94 (301)
++=-+.+..++..+..-... -.++++.|+|.++.+.+-. ...+.+++.|+.|+|+++ .+..+.. .++++|+.|+++
T Consensus 9 l~~l~~l~~~~~~l~~ip~~-~~~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls 85 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPD-LPKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRA-ELTKLQVDGTLPVLGTLDLS 85 (290)
T ss_dssp STTCCEEECTTSCCSSCCSC-CCTTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTS-CCCEEECCSCCTTCCEEECC
T ss_pred cCCccEEECCCCCCCcCCCC-CCCCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCC-ccCcccCCCCCCcCCEEECC
Confidence 33335566666666541111 2478999999998875411 123457889999999886 4544432 457889999988
Q ss_pred eeCCCceeE---eecCceeEEEEcCCC-CCCc-cccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 95 NEDRLARVS---ICGPNVRLVDISSLH-APCG-INVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 95 ~C~~l~~i~---i~ap~L~~f~~~g~~-~~~~-i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
++. ++.+. -..++|+.++..+.. .... ..+.++++|+.|++.++.++.- -...+...+.|+.|++
T Consensus 86 ~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 86 HNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSL 155 (290)
T ss_dssp SSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEEC
T ss_pred CCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc-ChhhcccccCCCEEEC
Confidence 763 33222 245788888887765 2222 2467888899999988876531 1233456778888877
No 99
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.59 E-value=2.5e-05 Score=70.76 Aligned_cols=135 Identities=13% Similarity=0.103 Sum_probs=94.5
Q ss_pred ceecccCccccCC--CCCCCCCCCcEEEecccccCh-HHHHHHHhcCCcccEEeeecCCCceEE--EcCCCCCccEEEEE
Q 043541 20 KYIPQTYCKLDSH--TRNVTLSSLRELGLFKCAAND-EAIRDIVAGCPLIECLKIIDCRGLKSL--EFLNLGKLSKFMVR 94 (301)
Q Consensus 20 ~~~~~~~C~l~~~--~~~~~~~sLk~L~L~~c~i~d-~~L~~Lis~Cp~LE~L~L~~C~~l~~L--~i~~~~~Lk~L~i~ 94 (301)
.++.++++.+..- ....++++|+.|+|.++.+.+ .. ...++.|+.|+++++ .+..+ .+.++++|+.|+++
T Consensus 34 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV----DGTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp CEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC----CSCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECC
T ss_pred CEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC----CCCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECC
Confidence 4677778777541 234669999999999998865 11 168999999999986 44333 24567899999999
Q ss_pred eeCCCceeE---e-ecCceeEEEEcCCC-CCCc-cccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 95 NEDRLARVS---I-CGPNVRLVDISSLH-APCG-INVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 95 ~C~~l~~i~---i-~ap~L~~f~~~g~~-~~~~-i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
++. ++.+. + ..++|+.+...+.. .... -.+.++++|+.|+++++.++. .-...+.++++|+.|++
T Consensus 109 ~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~L 179 (290)
T 1p9a_G 109 FNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLL 179 (290)
T ss_dssp SSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC-CCTTTTTTCTTCCEEEC
T ss_pred CCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc-cCHHHhcCcCCCCEEEC
Confidence 763 33332 1 35789999998875 2222 235778999999999998762 11234567888998887
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.55 E-value=8.3e-05 Score=64.44 Aligned_cols=137 Identities=13% Similarity=0.118 Sum_probs=73.8
Q ss_pred eecccCccccCCCCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCccEEEEEeeC
Q 043541 21 YIPQTYCKLDSHTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMVRNED 97 (301)
Q Consensus 21 ~~~~~~C~l~~~~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i~~C~ 97 (301)
.+.+++..+..-.. .-.+.++.|+|.+..+..-.-.....+++.|+.|+|+++ .+..+. +.++++|+.|+++++.
T Consensus 15 ~l~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 15 TVDCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp EEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeEeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCc
Confidence 55566555543111 124567888888887753211123467888888888875 455542 4567778888887653
Q ss_pred CCceeE---e-ecCceeEEEEcCCC-CCC-ccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 98 RLARVS---I-CGPNVRLVDISSLH-APC-GINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 98 ~l~~i~---i-~ap~L~~f~~~g~~-~~~-~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
++.+. + ..++|++++..+.. ... ...+.++++|+.|+|.++.++.-. ...+..++.|+.|++
T Consensus 93 -l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 93 -LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA-PGAFDTLHSLSTLNL 160 (220)
T ss_dssp -CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC-TTTTTTCTTCCEEEC
T ss_pred -cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC-HHHhcCCCCCCEEEe
Confidence 22221 1 24556666655544 111 123455566666666666544210 122334555555554
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.55 E-value=5.1e-05 Score=64.60 Aligned_cols=131 Identities=15% Similarity=0.105 Sum_probs=83.7
Q ss_pred ceecccCccccCCCC--CCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCccEEEEE
Q 043541 20 KYIPQTYCKLDSHTR--NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMVR 94 (301)
Q Consensus 20 ~~~~~~~C~l~~~~~--~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i~ 94 (301)
+++.++++.+..-.. ..++++|++|+|.++.+.+ .......+++.|+.|+|+++ ++..+. +.++++|+.|+++
T Consensus 31 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEcCCCccCcCChhhhcccccCcEEECCCCccCc-cChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEEEcC
Confidence 567777777664221 2468889999998887653 11123457888999998886 343332 3457888888888
Q ss_pred eeCCCceeE----eecCceeEEEEcCCC-CCCc-cccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 95 NEDRLARVS----ICGPNVRLVDISSLH-APCG-INVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 95 ~C~~l~~i~----i~ap~L~~f~~~g~~-~~~~-i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
++. ++.+. -..++|+.++..+.. .... ..+..+++|+.|++.++.++ ..|+.|+.|.+
T Consensus 109 ~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~L~~ 172 (208)
T 2o6s_A 109 TNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSE 172 (208)
T ss_dssp SSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC--------CCTTTTHHHHH
T ss_pred CCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee--------cCCCCHHHHHH
Confidence 763 33322 135788888887764 2222 23667888899988887654 34566666654
No 102
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.55 E-value=6.5e-05 Score=68.13 Aligned_cols=139 Identities=12% Similarity=0.125 Sum_probs=91.6
Q ss_pred eeecceecccCccccCCC--CCCCCCCCcEEEecccccCh-HHHHH--HHhcCCcccEEeeecCCCceEEE------cCC
Q 043541 16 LVLSKYIPQTYCKLDSHT--RNVTLSSLRELGLFKCAAND-EAIRD--IVAGCPLIECLKIIDCRGLKSLE------FLN 84 (301)
Q Consensus 16 ~~~~~~~~~~~C~l~~~~--~~~~~~sLk~L~L~~c~i~d-~~L~~--Lis~Cp~LE~L~L~~C~~l~~L~------i~~ 84 (301)
+|==+++.+++|.+.... ...++++|++|+|+++.+.. .++.. ...++|.|++|+|++| +++.+. +.+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhc
Confidence 444467888888885422 22468999999999998653 33332 2357889999999997 443221 234
Q ss_pred CCCccEEEEEeeCCCcee-----Eee--cCceeEEEEcCCC-CCCccccccccccceEeecccccchHHHHHHhccCCCc
Q 043541 85 LGKLSKFMVRNEDRLARV-----SIC--GPNVRLVDISSLH-APCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFL 156 (301)
Q Consensus 85 ~~~Lk~L~i~~C~~l~~i-----~i~--ap~L~~f~~~g~~-~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~L 156 (301)
+++|+.|+++++. ++.+ .-. .++|++++..+.. ......+ +++|+.|+++++.+++- ..+..++.|
T Consensus 223 l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--~~~L~~L~Ls~N~l~~~---~~~~~l~~L 296 (310)
T 4glp_A 223 GVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL--PAKLRVLDLSSNRLNRA---PQPDELPEV 296 (310)
T ss_dssp TCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC--CSCCSCEECCSCCCCSC---CCTTSCCCC
T ss_pred CCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCCCCCchhhhh--cCCCCEEECCCCcCCCC---chhhhCCCc
Confidence 6889999998764 2222 111 2689999988765 2222222 37999999999987742 114667888
Q ss_pred cEEEe
Q 043541 157 EYVEI 161 (301)
Q Consensus 157 E~L~L 161 (301)
+.|++
T Consensus 297 ~~L~L 301 (310)
T 4glp_A 297 DNLTL 301 (310)
T ss_dssp SCEEC
T ss_pred cEEEC
Confidence 88876
No 103
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.52 E-value=1.8e-05 Score=63.85 Aligned_cols=113 Identities=12% Similarity=0.077 Sum_probs=77.6
Q ss_pred ceecccCcccc--C-CCCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceE-E--EcCCCCCccEEEE
Q 043541 20 KYIPQTYCKLD--S-HTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKS-L--EFLNLGKLSKFMV 93 (301)
Q Consensus 20 ~~~~~~~C~l~--~-~~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~-L--~i~~~~~Lk~L~i 93 (301)
+.+.+++|.+. . +....++++|+.|+|.++.+.+- .-+.+++.|+.|+++++. +.. + .+.++++|+.|++
T Consensus 20 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 20 KELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp SEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSC-CCSCTHHHHHHCTTCCEEEC
T ss_pred eEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCc-ccchHHHHhhhCCCCCEEEC
Confidence 46677888776 2 22335689999999999987643 456778999999998874 322 1 1223788999999
Q ss_pred EeeCCCceeE-----eecCceeEEEEcCCC-CCCc----cccccccccceEeec
Q 043541 94 RNEDRLARVS-----ICGPNVRLVDISSLH-APCG----INVALCKNLKEFKLF 137 (301)
Q Consensus 94 ~~C~~l~~i~-----i~ap~L~~f~~~g~~-~~~~----i~~~~c~~Lk~L~L~ 137 (301)
+++. ++++. -..++|++++..+.. .... ..+..+++|+.|+++
T Consensus 96 s~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 8775 33321 246889999998875 2222 247788999998775
No 104
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.52 E-value=4.7e-05 Score=63.37 Aligned_cols=123 Identities=8% Similarity=0.053 Sum_probs=86.5
Q ss_pred ceecccCccccCCCCCCC-CCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCccEEEEEe
Q 043541 20 KYIPQTYCKLDSHTRNVT-LSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMVRN 95 (301)
Q Consensus 20 ~~~~~~~C~l~~~~~~~~-~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i~~ 95 (301)
+.+.+++|.+..-..... .++|+.|+|+++.+.+ + .-+.+++.|+.|+++++ .+..+. +.++++|+.|++++
T Consensus 22 ~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~--~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~ 97 (176)
T 1a9n_A 22 RELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK--L-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTN 97 (176)
T ss_dssp EEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE--E-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCS
T ss_pred eEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCc--c-cccccCCCCCEEECCCC-cccccCcchhhcCCCCCEEECCC
Confidence 567778887765323333 4499999999998865 2 34567899999999996 565553 25679999999998
Q ss_pred eC--CCcee-Ee-ecCceeEEEEcCCC-CCCcc----ccccccccceEeecccccchHHH
Q 043541 96 ED--RLARV-SI-CGPNVRLVDISSLH-APCGI----NVALCKNLKEFKLFKISITNEWL 146 (301)
Q Consensus 96 C~--~l~~i-~i-~ap~L~~f~~~g~~-~~~~i----~~~~c~~Lk~L~L~~~~It~~~l 146 (301)
+. .+..+ .+ ..++|+.++..+.. ..... .+..+++|+.|++..+.+.+...
T Consensus 98 N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~~~ 157 (176)
T 1a9n_A 98 NSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQE 157 (176)
T ss_dssp CCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHHHH
T ss_pred CcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHHHHH
Confidence 74 22221 11 56899999998876 22222 27789999999999887665443
No 105
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.51 E-value=0.00029 Score=70.95 Aligned_cols=67 Identities=16% Similarity=0.088 Sum_probs=37.3
Q ss_pred CCccEEEEEeeCCCceeEeecCceeEEEEcCCC-CCCccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 86 GKLSKFMVRNEDRLARVSICGPNVRLVDISSLH-APCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 86 ~~Lk~L~i~~C~~l~~i~i~ap~L~~f~~~g~~-~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
++|+.|++.++. ++.+.-..++|++++..++. ..+. ..+++|+.|+++++.++. +...+++|+.|++
T Consensus 201 ~~L~~L~L~~N~-l~~l~~~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~-----lp~~~~~L~~L~L 268 (622)
T 3g06_A 201 SELYKLWAYNNR-LTSLPALPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTS-----LPMLPSGLLSLSV 268 (622)
T ss_dssp TTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-----CCCCCTTCCEEEC
T ss_pred chhhEEECcCCc-ccccCCCCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCc-----CCcccccCcEEeC
Confidence 345555555442 22222223667777776654 1111 456788888888877652 2125677887777
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.49 E-value=4.9e-05 Score=66.26 Aligned_cols=120 Identities=12% Similarity=0.045 Sum_probs=66.5
Q ss_pred CCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCccEEEEEeeCCCceeEe----ecCcee
Q 043541 38 LSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDRLARVSI----CGPNVR 110 (301)
Q Consensus 38 ~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i~~C~~l~~i~i----~ap~L~ 110 (301)
.++|+.|+|.++.+..- ......+++.|+.|+|+++ ++..+. +.++++|+.|+++++. ++.+.- ..++|+
T Consensus 39 ~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~ 115 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKL-EPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLK 115 (229)
T ss_dssp CTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred CCCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCc-CCccChhHhCcchhhC
Confidence 57899999999887531 1123457788999999886 344442 3457788888888653 333221 234555
Q ss_pred EEEEcCCC-CCCccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 111 LVDISSLH-APCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 111 ~f~~~g~~-~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
.++..+.. ..+...+.++++|+.|+++++.++.- -...+..++.|+.|.+
T Consensus 116 ~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 116 ELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSI-PHGAFDRLSSLTHAYL 166 (229)
T ss_dssp EEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEEC
T ss_pred eEeccCCcccccCcccccCCCCCEEECCCCcCCcc-CHHHHhCCCCCCEEEe
Confidence 55555443 22222345555566666655554310 0122334455555544
No 107
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.48 E-value=3e-05 Score=70.72 Aligned_cols=143 Identities=13% Similarity=0.162 Sum_probs=93.2
Q ss_pred eeeecceecccCccccC--CCCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCce-EE--EcCCCC-Cc
Q 043541 15 RLVLSKYIPQTYCKLDS--HTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLK-SL--EFLNLG-KL 88 (301)
Q Consensus 15 ~~~~~~~~~~~~C~l~~--~~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~-~L--~i~~~~-~L 88 (301)
.++-=+++.++++.+.. +....++++|++|+|.++.+.+ .+..-+.+++.|++|+++++. +. .+ .+.+++ +|
T Consensus 99 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~~L 176 (313)
T 1ogq_A 99 KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG-TLPPSISSLPNLVGITFDGNR-ISGAIPDSYGSFSKLF 176 (313)
T ss_dssp GCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES-CCCGGGGGCTTCCEEECCSSC-CEEECCGGGGCCCTTC
T ss_pred cCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCC-cCChHHhcCCCCCeEECcCCc-ccCcCCHHHhhhhhcC
Confidence 33444677888888752 2234569999999999998753 112234678999999999974 33 22 344566 89
Q ss_pred cEEEEEeeCCCcee--EeecCceeEEEEcCCC--CCCccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 89 SKFMVRNEDRLARV--SICGPNVRLVDISSLH--APCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 89 k~L~i~~C~~l~~i--~i~ap~L~~f~~~g~~--~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
+.|+++++.--..+ .+...+|+.++..+.. ......+..+++|+.|++.++.++...- .+..++.|+.|++
T Consensus 177 ~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L~L 251 (313)
T 1ogq_A 177 TSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG--KVGLSKNLNGLDL 251 (313)
T ss_dssp CEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG--GCCCCTTCCEEEC
T ss_pred cEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC--cccccCCCCEEEC
Confidence 99999876410011 1122238888887765 1223457788999999999988763211 1566788888887
No 108
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.46 E-value=0.00023 Score=69.56 Aligned_cols=120 Identities=17% Similarity=0.217 Sum_probs=85.9
Q ss_pred ceecccCccccC-C-CCCCCCCCCcEEEecccccChHHH-HHHHhcCCcccEEeeecCCCceEEE---cCCCCCccEEEE
Q 043541 20 KYIPQTYCKLDS-H-TRNVTLSSLRELGLFKCAANDEAI-RDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMV 93 (301)
Q Consensus 20 ~~~~~~~C~l~~-~-~~~~~~~sLk~L~L~~c~i~d~~L-~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i 93 (301)
+++.+++-.+.. + ....++++|+.|+|+++.+.. + .....++++|++|+|+++ .++.+. +.++++|+.|++
T Consensus 55 ~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~--i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE--ECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEEC
T ss_pred CEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC--cChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEEC
Confidence 466677666543 1 234679999999999998753 1 112467899999999997 577664 467899999999
Q ss_pred EeeC--CCceeEe-ecCceeEEEEcCCC-CC--CccccccccccceEeecccccc
Q 043541 94 RNED--RLARVSI-CGPNVRLVDISSLH-AP--CGINVALCKNLKEFKLFKISIT 142 (301)
Q Consensus 94 ~~C~--~l~~i~i-~ap~L~~f~~~g~~-~~--~~i~~~~c~~Lk~L~L~~~~It 142 (301)
+++. .+....+ ..++|++++..+.. .. ....+..+++|+.|++.++.++
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 9874 3333223 46899999988765 22 2335678899999999998754
No 109
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.45 E-value=0.00019 Score=70.38 Aligned_cols=134 Identities=14% Similarity=0.113 Sum_probs=96.0
Q ss_pred ceecccCccccCCCCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCccEEEEEee
Q 043541 20 KYIPQTYCKLDSHTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMVRNE 96 (301)
Q Consensus 20 ~~~~~~~C~l~~~~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i~~C 96 (301)
.++.++++.+..-.... .++|++|+|.++.+.+-. ..-+.+++.|+.|+|+++ .+..+. +.++++|+.|+++++
T Consensus 34 ~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELR-MPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCC-GGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccC-hhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCC
Confidence 67888888887522222 589999999999886411 123468899999999997 566553 456789999999977
Q ss_pred CCCceeEe-ecCceeEEEEcCCC-CCC--ccccccccccceEeecccccchHHHHHHhccCCCc--cEEEe
Q 043541 97 DRLARVSI-CGPNVRLVDISSLH-APC--GINVALCKNLKEFKLFKISITNEWLCNQFSELPFL--EYVEI 161 (301)
Q Consensus 97 ~~l~~i~i-~ap~L~~f~~~g~~-~~~--~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~L--E~L~L 161 (301)
. ++++.- ..++|++++..+.. ... ...++++++|+.|+++++.++...+. +++.| +.|++
T Consensus 111 ~-l~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~----~l~~L~L~~L~L 176 (562)
T 3a79_B 111 R-LQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLL----PVAHLHLSCILL 176 (562)
T ss_dssp C-CCEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTG----GGTTSCEEEEEE
T ss_pred c-CCccCccccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchh----hhhhceeeEEEe
Confidence 4 443321 57889999998876 222 24688999999999999988875443 33445 77776
No 110
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.43 E-value=0.00016 Score=75.65 Aligned_cols=145 Identities=10% Similarity=0.074 Sum_probs=93.7
Q ss_pred ceeeeecceecccCccccC--CCCCCCCCCCcEEEecccc-cCh----HHHHHHH---hcCCcccEEeeecCCCceEE--
Q 043541 13 SSRLVLSKYIPQTYCKLDS--HTRNVTLSSLRELGLFKCA-AND----EAIRDIV---AGCPLIECLKIIDCRGLKSL-- 80 (301)
Q Consensus 13 ~~~~~~~~~~~~~~C~l~~--~~~~~~~~sLk~L~L~~c~-i~d----~~L~~Li---s~Cp~LE~L~L~~C~~l~~L-- 80 (301)
++.++==+++.+++|.+.. +....++++|+.|+|.++. +.. .++..+. .++|.|+.|+|+++. +..+
T Consensus 487 f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~ 565 (876)
T 4ecn_A 487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPA 565 (876)
T ss_dssp GGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCC
T ss_pred hccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCC
Confidence 3455555678888887654 1223568999999999997 654 4444443 566799999998874 3333
Q ss_pred --EcCCCCCccEEEEEeeCCCceeE-e-ecCceeEEEEcCCC-CCCccccccccc-cceEeecccccchHHHHHHhccC-
Q 043541 81 --EFLNLGKLSKFMVRNEDRLARVS-I-CGPNVRLVDISSLH-APCGINVALCKN-LKEFKLFKISITNEWLCNQFSEL- 153 (301)
Q Consensus 81 --~i~~~~~Lk~L~i~~C~~l~~i~-i-~ap~L~~f~~~g~~-~~~~i~~~~c~~-Lk~L~L~~~~It~~~l~~L~~~c- 153 (301)
.+.++++|+.|+++++. ++.+. + ..++|+.++..+.. ..+...+..+++ |+.|+++++.++ .+...+...
T Consensus 566 ~~~l~~L~~L~~L~Ls~N~-l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~--~lp~~~~~~~ 642 (876)
T 4ecn_A 566 SASLQKMVKLGLLDCVHNK-VRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK--YIPNIFNAKS 642 (876)
T ss_dssp HHHHTTCTTCCEEECTTSC-CCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC--SCCSCCCTTC
T ss_pred hhhhhcCCCCCEEECCCCC-cccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC--cCchhhhccc
Confidence 24567889999888764 22332 2 35778888887765 323335677777 888888888766 233333333
Q ss_pred -CCccEEEe
Q 043541 154 -PFLEYVEI 161 (301)
Q Consensus 154 -p~LE~L~L 161 (301)
+.|+.|++
T Consensus 643 ~~~L~~L~L 651 (876)
T 4ecn_A 643 VYVMGSVDF 651 (876)
T ss_dssp SSCEEEEEC
T ss_pred cCCCCEEEC
Confidence 23666666
No 111
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.43 E-value=9e-05 Score=62.72 Aligned_cols=111 Identities=13% Similarity=0.058 Sum_probs=67.4
Q ss_pred CCCCCCcEEEeccc-ccChHHHHHH---HhcCCcccEEeeecCC----CceEE--EcCCCCCccEEEEEeeCCCceeEee
Q 043541 36 VTLSSLRELGLFKC-AANDEAIRDI---VAGCPLIECLKIIDCR----GLKSL--EFLNLGKLSKFMVRNEDRLARVSIC 105 (301)
Q Consensus 36 ~~~~sLk~L~L~~c-~i~d~~L~~L---is~Cp~LE~L~L~~C~----~l~~L--~i~~~~~Lk~L~i~~C~~l~~i~i~ 105 (301)
.+.++|++|+|.++ .+.+++.+.+ +..++.|++|+|+++. |...+ .+...++|++|++++|. +.+-...
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~ 111 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGIL 111 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHH
Confidence 34778888888888 8887555544 4457888888888875 11111 11123677777777653 2110000
Q ss_pred cCceeEEEEcCCCCCCccccccccccceEee--cccccchHHHH---HHhccCCCccEEEe
Q 043541 106 GPNVRLVDISSLHAPCGINVALCKNLKEFKL--FKISITNEWLC---NQFSELPFLEYVEI 161 (301)
Q Consensus 106 ap~L~~f~~~g~~~~~~i~~~~c~~Lk~L~L--~~~~It~~~l~---~L~~~cp~LE~L~L 161 (301)
.+.-.+...++|++|+| .++.|++++.. ..+...+.|+.|++
T Consensus 112 --------------~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L 158 (185)
T 1io0_A 112 --------------ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGY 158 (185)
T ss_dssp --------------HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred --------------HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEec
Confidence 00112455667888888 77778887644 44566777887776
No 112
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.42 E-value=0.00011 Score=73.67 Aligned_cols=143 Identities=10% Similarity=0.114 Sum_probs=92.8
Q ss_pred eeeecceecccCccccC--CCCCCCCCCCcEEEecccc-cCh----HHHHHH--HhcCCcccEEeeecCCCceEE----E
Q 043541 15 RLVLSKYIPQTYCKLDS--HTRNVTLSSLRELGLFKCA-AND----EAIRDI--VAGCPLIECLKIIDCRGLKSL----E 81 (301)
Q Consensus 15 ~~~~~~~~~~~~C~l~~--~~~~~~~~sLk~L~L~~c~-i~d----~~L~~L--is~Cp~LE~L~L~~C~~l~~L----~ 81 (301)
.++==+++.+++|.+.. +....++++|+.|+|.++. ++. .++..+ ..+++.|++|+++++. +..+ .
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~ 325 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETS 325 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhh
Confidence 44445688888887654 2234579999999999998 664 333333 2356899999999874 3333 2
Q ss_pred cCCCCCccEEEEEeeCCCc-eeE-e-ecCceeEEEEcCCC-CCCccccccccc-cceEeecccccchHHHHHHhcc--CC
Q 043541 82 FLNLGKLSKFMVRNEDRLA-RVS-I-CGPNVRLVDISSLH-APCGINVALCKN-LKEFKLFKISITNEWLCNQFSE--LP 154 (301)
Q Consensus 82 i~~~~~Lk~L~i~~C~~l~-~i~-i-~ap~L~~f~~~g~~-~~~~i~~~~c~~-Lk~L~L~~~~It~~~l~~L~~~--cp 154 (301)
+.++++|+.|+++++. ++ .+. + ..++|+.++..+.. ......+.++++ |+.|+++++.++ .+...+.. ++
T Consensus 326 l~~l~~L~~L~L~~N~-l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~--~lp~~~~~~~l~ 402 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQ-LEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK--YIPNIFDAKSVS 402 (636)
T ss_dssp HTTCTTCCEEECCSCC-CEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS--SCCSCCCTTCSS
T ss_pred hccCCCCCEEeCcCCc-CccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc--ccchhhhhcccC
Confidence 5567889999998774 22 222 2 35678888877664 223334677777 888888888766 23332222 33
Q ss_pred CccEEEe
Q 043541 155 FLEYVEI 161 (301)
Q Consensus 155 ~LE~L~L 161 (301)
+|+.|++
T Consensus 403 ~L~~L~L 409 (636)
T 4eco_A 403 VMSAIDF 409 (636)
T ss_dssp CEEEEEC
T ss_pred ccCEEEC
Confidence 6777766
No 113
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.40 E-value=3.1e-05 Score=73.07 Aligned_cols=140 Identities=13% Similarity=0.140 Sum_probs=90.1
Q ss_pred ceecccCccccCCC-------CCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCc-----eEEE--c-CC
Q 043541 20 KYIPQTYCKLDSHT-------RNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGL-----KSLE--F-LN 84 (301)
Q Consensus 20 ~~~~~~~C~l~~~~-------~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l-----~~L~--i-~~ 84 (301)
+++++++|.+.... -..+.++|+.|+|+++.+++.++..++..++.|++|+|++|. + +.+. + ..
T Consensus 75 ~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~L~~~ 153 (372)
T 3un9_A 75 RQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDLLLHD 153 (372)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHHHHST
T ss_pred CEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHHHHhc
Confidence 35666666664310 001246788888888887777777777777778888888763 2 1110 1 23
Q ss_pred CCCccEEEEEeeCCCceeE--------eecCceeEEEEcCCCCC------CccccccccccceEeecccccchHHHHHH-
Q 043541 85 LGKLSKFMVRNEDRLARVS--------ICGPNVRLVDISSLHAP------CGINVALCKNLKEFKLFKISITNEWLCNQ- 149 (301)
Q Consensus 85 ~~~Lk~L~i~~C~~l~~i~--------i~ap~L~~f~~~g~~~~------~~i~~~~c~~Lk~L~L~~~~It~~~l~~L- 149 (301)
+++|+.|++++|. +++.. -..++|++++..++.-. +...+..+++|+.|+|++|.|++.....+
T Consensus 154 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~ 232 (372)
T 3un9_A 154 QCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA 232 (372)
T ss_dssp TCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred CCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence 4778999988874 32211 13578888888776511 11124566789999999988888765544
Q ss_pred --hccCCCccEEEe
Q 043541 150 --FSELPFLEYVEI 161 (301)
Q Consensus 150 --~~~cp~LE~L~L 161 (301)
+..++.|+.|++
T Consensus 233 ~~L~~~~~L~~L~L 246 (372)
T 3un9_A 233 RAAREHPSLELLHL 246 (372)
T ss_dssp HHHHHCSSCCEEEC
T ss_pred HHHHhCCCCCEEec
Confidence 456788888887
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.40 E-value=0.00018 Score=66.89 Aligned_cols=102 Identities=12% Similarity=0.024 Sum_probs=48.4
Q ss_pred CCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCccEEEEEeeCCCceeEe----ecCceeE
Q 043541 39 SSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDRLARVSI----CGPNVRL 111 (301)
Q Consensus 39 ~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i~~C~~l~~i~i----~ap~L~~ 111 (301)
+.++.|+|++..+.+-.-..+..+++.|+.|+|+++ .+..+. +.++++|+.|+++++. ++.+.- ..++|+.
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~ 116 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEV 116 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCE
Confidence 346666666665543111111125666666666664 344432 3445566666666542 333221 2355555
Q ss_pred EEEcCCCC-CC-ccccccccccceEeecccccc
Q 043541 112 VDISSLHA-PC-GINVALCKNLKEFKLFKISIT 142 (301)
Q Consensus 112 f~~~g~~~-~~-~i~~~~c~~Lk~L~L~~~~It 142 (301)
|+..+..- .. ...+.++++|+.|+|+++.++
T Consensus 117 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred EECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence 55554431 11 113455556666666555543
No 115
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.39 E-value=1.8e-05 Score=67.29 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=15.7
Q ss_pred CCCCcEEEecccccChHHHHHHHhcCCcccEEeeecC
Q 043541 38 LSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDC 74 (301)
Q Consensus 38 ~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C 74 (301)
+++|+.|+|.++.+.+ +. -+.+++.|+.|+++++
T Consensus 47 l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n 80 (198)
T 1ds9_A 47 LKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRN 80 (198)
T ss_dssp TTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEE
T ss_pred CCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCC
Confidence 4555555555554433 11 2233445555555543
No 116
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.39 E-value=8.2e-05 Score=65.39 Aligned_cols=138 Identities=14% Similarity=0.126 Sum_probs=73.4
Q ss_pred ceecccCccccCCC--CCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCccEEEEE
Q 043541 20 KYIPQTYCKLDSHT--RNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMVR 94 (301)
Q Consensus 20 ~~~~~~~C~l~~~~--~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i~ 94 (301)
+++.++++.+..-. ...++++|+.|+|.++.+.+. ......+++.|+.|+|+++ .+..+. +.++++|+.|+++
T Consensus 38 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLG 115 (251)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCC-cccccChhHhcccCCCCEEEcC
Confidence 35566666655411 124567777777777766431 1112345677777777765 333221 2345677777777
Q ss_pred eeCCCceeEe----ecCceeEEEEcCCC-CCCcc-ccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 95 NEDRLARVSI----CGPNVRLVDISSLH-APCGI-NVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 95 ~C~~l~~i~i----~ap~L~~f~~~g~~-~~~~i-~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
++. ++.+.- ..++|+.++..+.. ..... .+.++++|+.|+|+++.++.- ....+.+++.|+.|++
T Consensus 116 ~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l 186 (251)
T 3m19_A 116 GNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV-PHGAFDRLGKLQTITL 186 (251)
T ss_dssp SSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEEC
T ss_pred CCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc-CHHHHhCCCCCCEEEe
Confidence 652 322221 24667777766654 22221 355667777777777665421 1122344556666555
No 117
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.38 E-value=0.00066 Score=65.34 Aligned_cols=76 Identities=20% Similarity=0.225 Sum_probs=42.4
Q ss_pred CcccEEeeecCCCceEE-EcCCCCCccEEEEEeeCCCceeEeecCceeEEEEcCCC-CCCccccccccccceEeeccccc
Q 043541 64 PLIECLKIIDCRGLKSL-EFLNLGKLSKFMVRNEDRLARVSICGPNVRLVDISSLH-APCGINVALCKNLKEFKLFKISI 141 (301)
Q Consensus 64 p~LE~L~L~~C~~l~~L-~i~~~~~Lk~L~i~~C~~l~~i~i~ap~L~~f~~~g~~-~~~~i~~~~c~~Lk~L~L~~~~I 141 (301)
+.|++|+++++. +..+ .+.++++|+.|+++++. ++.+.-..++|++++..+.. .... .++++++|+.|++.++.+
T Consensus 131 ~~L~~L~L~~n~-l~~lp~~~~l~~L~~L~l~~N~-l~~lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l 207 (454)
T 1jl5_A 131 PLLEYLGVSNNQ-LEKLPELQNSSFLKIIDVDNNS-LKKLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSL 207 (454)
T ss_dssp TTCCEEECCSSC-CSSCCCCTTCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCC
T ss_pred CCCCEEECcCCC-CCCCcccCCCCCCCEEECCCCc-CcccCCCcccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcC
Confidence 466666666642 2111 24456778888877663 33332234577777776654 2222 456666666666666654
Q ss_pred c
Q 043541 142 T 142 (301)
Q Consensus 142 t 142 (301)
+
T Consensus 208 ~ 208 (454)
T 1jl5_A 208 K 208 (454)
T ss_dssp S
T ss_pred C
Confidence 4
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.37 E-value=0.0002 Score=61.98 Aligned_cols=120 Identities=11% Similarity=0.104 Sum_probs=66.1
Q ss_pred CCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE---EcCCCCCccEEEEEeeCCCceeEe----ecCcee
Q 043541 38 LSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL---EFLNLGKLSKFMVRNEDRLARVSI----CGPNVR 110 (301)
Q Consensus 38 ~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L---~i~~~~~Lk~L~i~~C~~l~~i~i----~ap~L~ 110 (301)
.++|+.|+|.+..+.+- ......+++.|+.|+|+++ .+..+ .+.++++|+.|+++++. ++.+.- ..++|+
T Consensus 31 ~~~l~~L~l~~n~i~~i-~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~ 107 (220)
T 2v9t_B 31 PETITEIRLEQNTIKVI-PPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQ 107 (220)
T ss_dssp CTTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred CcCCCEEECCCCcCCCc-CHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHccCCCCCC
Confidence 36899999999877531 0113456788999999886 45554 34567788888888653 322221 235555
Q ss_pred EEEEcCCC-CCC-ccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 111 LVDISSLH-APC-GINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 111 ~f~~~g~~-~~~-~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
.++..+.. ... ...+.++++|+.|+|+++.++.-. ...+..++.|+.|++
T Consensus 108 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 108 LLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA-KGTFSPLRAIQTMHL 159 (220)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEEC
T ss_pred EEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC-HHHHhCCCCCCEEEe
Confidence 55555443 111 123445556666666655543211 112333445555544
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.32 E-value=0.00019 Score=71.39 Aligned_cols=116 Identities=16% Similarity=0.145 Sum_probs=64.4
Q ss_pred CcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE--EcCCCCCccEEEEEeeCCCceeE-e-ecCceeEEEEcC
Q 043541 41 LRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL--EFLNLGKLSKFMVRNEDRLARVS-I-CGPNVRLVDISS 116 (301)
Q Consensus 41 Lk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L--~i~~~~~Lk~L~i~~C~~l~~i~-i-~ap~L~~f~~~g 116 (301)
|+.|+|.++.+++ +.. +.+++.|+.|+|+++ .+..+ .+.++++|+.|+++++. ++.+. + ..++|+.++..+
T Consensus 443 L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNA-LENVDGVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSS--CCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCC--CcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCC-CCCCcccCCCCCCcEEECCC
Confidence 5566666555532 222 445555666666554 23222 23345556666665442 11111 1 245566666555
Q ss_pred CC-CCC--ccccccccccceEeecccccchH--HHHHHhccCCCccEEEe
Q 043541 117 LH-APC--GINVALCKNLKEFKLFKISITNE--WLCNQFSELPFLEYVEI 161 (301)
Q Consensus 117 ~~-~~~--~i~~~~c~~Lk~L~L~~~~It~~--~l~~L~~~cp~LE~L~L 161 (301)
.. ... ...++++++|+.|+|+++.+++. ....+...+|+|+.|++
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 44 222 34577889999999999887653 34455666888888763
No 120
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.32 E-value=9.2e-06 Score=69.06 Aligned_cols=121 Identities=12% Similarity=0.110 Sum_probs=76.5
Q ss_pred CCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE-EcCCCCCccEEEEEeeC--CCceeEeecCceeEEEEc
Q 043541 39 SSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL-EFLNLGKLSKFMVRNED--RLARVSICGPNVRLVDIS 115 (301)
Q Consensus 39 ~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L-~i~~~~~Lk~L~i~~C~--~l~~i~i~ap~L~~f~~~ 115 (301)
-.|+...+.+..-.=+.+..-+.+++.|+.|+++++. +..+ .+.++++|+.|+++++. .+....-..++|+.++..
T Consensus 23 l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp TTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEE
T ss_pred cchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-CccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECc
Confidence 3445555554411102233355678899999998863 3222 44557889999999874 222211134788888887
Q ss_pred CCC-CCCccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 116 SLH-APCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 116 g~~-~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
+.. .... .+..+++|+.|++.++.+++-.....+..++.|+.|++
T Consensus 102 ~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l 147 (198)
T 1ds9_A 102 YNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLL 147 (198)
T ss_dssp EEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEE
T ss_pred CCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEe
Confidence 664 2222 46778899999999988876333345677888998887
No 121
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.28 E-value=0.00033 Score=70.16 Aligned_cols=138 Identities=10% Similarity=0.009 Sum_probs=74.7
Q ss_pred ceecccCccccCCCCC---CCCCCCcEEEecccccChHHHHHHH------hcCCcccEEeeecCCCceEEE---cCCCCC
Q 043541 20 KYIPQTYCKLDSHTRN---VTLSSLRELGLFKCAANDEAIRDIV------AGCPLIECLKIIDCRGLKSLE---FLNLGK 87 (301)
Q Consensus 20 ~~~~~~~C~l~~~~~~---~~~~sLk~L~L~~c~i~d~~L~~Li------s~Cp~LE~L~L~~C~~l~~L~---i~~~~~ 87 (301)
+++.++++.+..-... ..+++|+.|+|.++.+.+..-..+. ..++.|+.|+|+++. +..+. ..++++
T Consensus 380 ~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~ 458 (636)
T 4eco_A 380 ENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSP 458 (636)
T ss_dssp CEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHHHHTTCC
T ss_pred cEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcCCHHHHccCCC
Confidence 4566666665531111 1234677777777766431111111 045577777777753 33221 123567
Q ss_pred ccEEEEEeeCCCceeEee----c-------CceeEEEEcCCC-CCCccccc--cccccceEeecccccchHHHHHHhccC
Q 043541 88 LSKFMVRNEDRLARVSIC----G-------PNVRLVDISSLH-APCGINVA--LCKNLKEFKLFKISITNEWLCNQFSEL 153 (301)
Q Consensus 88 Lk~L~i~~C~~l~~i~i~----a-------p~L~~f~~~g~~-~~~~i~~~--~c~~Lk~L~L~~~~It~~~l~~L~~~c 153 (301)
|+.|+++++. ++.+... . ++|+.++..+.. ..+...+. .+++|+.|+++++.++. +...+.++
T Consensus 459 L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~--ip~~~~~l 535 (636)
T 4eco_A 459 LSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK--FPTQPLNS 535 (636)
T ss_dssp CSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGC
T ss_pred CCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC--cChhhhcC
Confidence 7777777653 2222211 1 167777776654 22233343 67778888887777664 44445567
Q ss_pred CCccEEEe
Q 043541 154 PFLEYVEI 161 (301)
Q Consensus 154 p~LE~L~L 161 (301)
+.|+.|++
T Consensus 536 ~~L~~L~L 543 (636)
T 4eco_A 536 STLKGFGI 543 (636)
T ss_dssp SSCCEEEC
T ss_pred CCCCEEEC
Confidence 77777776
No 122
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.25 E-value=0.00039 Score=63.35 Aligned_cols=137 Identities=15% Similarity=0.162 Sum_probs=88.9
Q ss_pred ceecccCccccCCCCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE---EcCCCCCccEEEEEee
Q 043541 20 KYIPQTYCKLDSHTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL---EFLNLGKLSKFMVRNE 96 (301)
Q Consensus 20 ~~~~~~~C~l~~~~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L---~i~~~~~Lk~L~i~~C 96 (301)
..+..+++.+..-.. .-.++|+.|+|+++.+.+-. ..-+.+++.|++|+++++ ++..+ .+.++++|+.|+++++
T Consensus 36 ~~l~~~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 36 RVVQCSDLGLKAVPK-EISPDTTLLDLQNNDISELR-KDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp TEEECCSSCCSSCCS-CCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSS
T ss_pred CEEECCCCCccccCC-CCCCCCeEEECCCCcCCccC-HhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCC
Confidence 456666666654122 22578999999999876411 112468899999999987 45555 3566889999999876
Q ss_pred CCCceeEee-cCceeEEEEcCCC-CCCc-cccccccccceEeecccccchHHH-HHHhccCCCccEEEe
Q 043541 97 DRLARVSIC-GPNVRLVDISSLH-APCG-INVALCKNLKEFKLFKISITNEWL-CNQFSELPFLEYVEI 161 (301)
Q Consensus 97 ~~l~~i~i~-ap~L~~f~~~g~~-~~~~-i~~~~c~~Lk~L~L~~~~It~~~l-~~L~~~cp~LE~L~L 161 (301)
. ++++.-. .++|++++..+.. .... ..+.++++|+.|++.++.+++... ...+... .|+.|++
T Consensus 113 ~-l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l 179 (332)
T 2ft3_A 113 H-LVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRI 179 (332)
T ss_dssp C-CCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBC
T ss_pred c-CCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEEC
Confidence 4 3333221 2789999888765 2222 236788999999999888765322 2223333 6666665
No 123
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.24 E-value=0.00023 Score=61.87 Aligned_cols=120 Identities=13% Similarity=0.036 Sum_probs=85.6
Q ss_pred ceecccCccccCC--CCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCccEEEEE
Q 043541 20 KYIPQTYCKLDSH--TRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMVR 94 (301)
Q Consensus 20 ~~~~~~~C~l~~~--~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i~ 94 (301)
+++.++++.+..- ....++++|+.|+|.++.+.. .......+++.|+.|+|+++ .+..+. +.++++|+.|+++
T Consensus 43 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~-i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls 120 (229)
T 3e6j_A 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELFMC 120 (229)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC-cChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeEecc
Confidence 5677888887752 123579999999999998753 11123467899999999996 555442 3567899999998
Q ss_pred eeCCCceeE---eecCceeEEEEcCCC-CCCc-cccccccccceEeecccccc
Q 043541 95 NEDRLARVS---ICGPNVRLVDISSLH-APCG-INVALCKNLKEFKLFKISIT 142 (301)
Q Consensus 95 ~C~~l~~i~---i~ap~L~~f~~~g~~-~~~~-i~~~~c~~Lk~L~L~~~~It 142 (301)
++. ++.+. -..++|+.++..+.. .... ..+..+++|+.|++.++.++
T Consensus 121 ~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 121 CNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 764 33332 246889999998875 2222 24778899999999988755
No 124
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.24 E-value=7.7e-05 Score=68.16 Aligned_cols=142 Identities=15% Similarity=0.097 Sum_probs=91.2
Q ss_pred eeeecceecccCccccCCCCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCC----ceEEEcCCCCCccE
Q 043541 15 RLVLSKYIPQTYCKLDSHTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRG----LKSLEFLNLGKLSK 90 (301)
Q Consensus 15 ~~~~~~~~~~~~C~l~~~~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~----l~~L~i~~~~~Lk~ 90 (301)
.++-=+++.++++.+..-. ..-+++|++|++.++.+.+ .......+++.|+.|+++++.- ...-.+.++ +|+.
T Consensus 100 ~l~~L~~L~L~~n~l~~l~-~~~~~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~ 176 (332)
T 2ft3_A 100 PLRKLQKLYISKNHLVEIP-PNLPSSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNY 176 (332)
T ss_dssp TCTTCCEEECCSSCCCSCC-SSCCTTCCEEECCSSCCCC-CCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSC
T ss_pred CcCCCCEEECCCCcCCccC-ccccccCCEEECCCCccCc-cCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCE
Confidence 3444467788888776422 2224899999999998763 1112356899999999998642 111122333 7888
Q ss_pred EEEEeeCCCceeEee-cCceeEEEEcCCC-CCCc-cccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 91 FMVRNEDRLARVSIC-GPNVRLVDISSLH-APCG-INVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 91 L~i~~C~~l~~i~i~-ap~L~~f~~~g~~-~~~~-i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
|+++++. ++.+... .++|+.++..+.. .... ..+.++++|+.|++.++.+++-. ...+..++.|+.|++
T Consensus 177 L~l~~n~-l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L 248 (332)
T 2ft3_A 177 LRISEAK-LTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE-NGSLSFLPTLRELHL 248 (332)
T ss_dssp CBCCSSB-CSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC-TTGGGGCTTCCEEEC
T ss_pred EECcCCC-CCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC-hhHhhCCCCCCEEEC
Confidence 8888764 2222211 2678888877765 2222 35778899999999998766421 123567888998887
No 125
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.18 E-value=0.00067 Score=70.96 Aligned_cols=52 Identities=10% Similarity=-0.002 Sum_probs=24.7
Q ss_pred ceeEEEEcCCC-CCCccccc--cccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 108 NVRLVDISSLH-APCGINVA--LCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 108 ~L~~f~~~g~~-~~~~i~~~--~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
+|+.++..++. ......+. .+++|+.|+|+++.++. +..-+.++++|+.|++
T Consensus 729 ~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~--lp~~l~~L~~L~~L~L 783 (876)
T 4ecn_A 729 LLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS--FPTQPLNSSQLKAFGI 783 (876)
T ss_dssp GCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCTTCCEEEC
T ss_pred CccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc--cchhhhcCCCCCEEEC
Confidence 45555554443 11222232 45556666666555543 2223345555555554
No 126
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.10 E-value=0.00072 Score=62.37 Aligned_cols=77 Identities=16% Similarity=0.229 Sum_probs=39.4
Q ss_pred eecccCccccC-CCC-CCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCccEEEEEe
Q 043541 21 YIPQTYCKLDS-HTR-NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMVRN 95 (301)
Q Consensus 21 ~~~~~~C~l~~-~~~-~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i~~ 95 (301)
++.+++..+.. +.+ ..++++|++|+|.++.+.+..-.....+++.+.++....+..+..+. +.++++|+.|++++
T Consensus 34 ~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~ 113 (350)
T 4ay9_X 34 ELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN 113 (350)
T ss_dssp EEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEE
T ss_pred EEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccc
Confidence 44555554443 112 24566666666666654320000122345555555555555555552 34567777777776
Q ss_pred eC
Q 043541 96 ED 97 (301)
Q Consensus 96 C~ 97 (301)
+.
T Consensus 114 n~ 115 (350)
T 4ay9_X 114 TG 115 (350)
T ss_dssp EC
T ss_pred cc
Confidence 63
No 127
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.01 E-value=0.00031 Score=60.73 Aligned_cols=121 Identities=16% Similarity=0.202 Sum_probs=85.5
Q ss_pred cceecccCccccCC--CC-CCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE---EcCCCCCccEEE
Q 043541 19 SKYIPQTYCKLDSH--TR-NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL---EFLNLGKLSKFM 92 (301)
Q Consensus 19 ~~~~~~~~C~l~~~--~~-~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L---~i~~~~~Lk~L~ 92 (301)
-+++.+++..+..- .+ ..++++|+.|+|.++.+.+-. ..-..+++.|+.|+|+++. +..+ .+.++++|+.|+
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNR-LENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-CCCCCGGGGTTCSSCCEEE
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCc-cCccCHhHhcCCcCCCEEE
Confidence 46788888887652 12 357999999999999876410 1134678999999999863 4333 255789999999
Q ss_pred EEeeCCCceeE---e-ecCceeEEEEcCCC-CCC-ccccccccccceEeecccccc
Q 043541 93 VRNEDRLARVS---I-CGPNVRLVDISSLH-APC-GINVALCKNLKEFKLFKISIT 142 (301)
Q Consensus 93 i~~C~~l~~i~---i-~ap~L~~f~~~g~~-~~~-~i~~~~c~~Lk~L~L~~~~It 142 (301)
++++. ++.+. + ..++|+.++..+.. ... ...+..+++|+.|++.++.++
T Consensus 112 Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 112 LRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 99764 32221 1 45889999998775 222 335778999999999988754
No 128
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.97 E-value=0.0012 Score=60.90 Aligned_cols=156 Identities=16% Similarity=0.140 Sum_probs=93.1
Q ss_pred CCCCcEEEecccccChHHHH-HHHhcCCcccEEeeecCCCceEEE---cCCCCCccEEEEEeeCCCceeEe----ecCce
Q 043541 38 LSSLRELGLFKCAANDEAIR-DIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDRLARVSI----CGPNV 109 (301)
Q Consensus 38 ~~sLk~L~L~~c~i~d~~L~-~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i~~C~~l~~i~i----~ap~L 109 (301)
.+++++|+|.+..++. +. ....++++|++|+|+++.-++.+. +.++++|+.+.+..+.+++.+.- ..++|
T Consensus 29 ~~~l~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L 106 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL 106 (350)
T ss_dssp CTTCSEEEEESCCCSE--ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTC
T ss_pred CCCCCEEEccCCcCCC--cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccc
Confidence 4689999999998753 21 124688999999999986556553 35678888888888888877642 45889
Q ss_pred eEEEEcCCC-CCC-ccccccccccceEeecccc-cc---hHHHHHHhccCCCccEEEe----eeecc--------cceEE
Q 043541 110 RLVDISSLH-APC-GINVALCKNLKEFKLFKIS-IT---NEWLCNQFSELPFLEYVEI----FRCMK--------IRKLL 171 (301)
Q Consensus 110 ~~f~~~g~~-~~~-~i~~~~c~~Lk~L~L~~~~-It---~~~l~~L~~~cp~LE~L~L----~~~l~--------I~~L~ 171 (301)
+++...+.. ... ...+....++..+.+.++. ++ ..++.. ....++.|.+ ++.+. +..+.
T Consensus 107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~---~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~ 183 (350)
T 4ay9_X 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG---LSFESVILWLNKNGIQEIHNSAFNGTQLDELN 183 (350)
T ss_dssp CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTT---SBSSCEEEECCSSCCCEECTTSSTTEEEEEEE
T ss_pred ccccccccccccCCchhhcccchhhhhhhccccccccccccchhh---cchhhhhhccccccccCCChhhccccchhHHh
Confidence 998887654 111 1223344556666665432 32 222211 1234556655 22211 11555
Q ss_pred eccCCCceeEEecC----CCeeEEEEccceE
Q 043541 172 VRSCNTLDEFKLDT----PNLSVFDYEGDMV 198 (301)
Q Consensus 172 l~~C~~L~~i~i~a----PnL~sf~y~g~~~ 198 (301)
+.++..++.+.-++ ++|+.++.++..+
T Consensus 184 l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l 214 (350)
T 4ay9_X 184 LSDNNNLEELPNDVFHGASGPVILDISRTRI 214 (350)
T ss_dssp CTTCTTCCCCCTTTTTTEECCSEEECTTSCC
T ss_pred hccCCcccCCCHHHhccCcccchhhcCCCCc
Confidence 55665666554322 4566666666543
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.91 E-value=0.00055 Score=62.54 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=21.8
Q ss_pred cccccceEeecccccchHHH-HHHhccCCCccEEEe
Q 043541 127 LCKNLKEFKLFKISITNEWL-CNQFSELPFLEYVEI 161 (301)
Q Consensus 127 ~c~~Lk~L~L~~~~It~~~l-~~L~~~cp~LE~L~L 161 (301)
.|++|+++++.++.|+. + ...+.+|.+|+.+.+
T Consensus 224 ~~~~L~~l~L~~n~i~~--I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATT--IPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp HCTTCCEEECTTBCCCE--ECTTTTTTCTTCCEEEC
T ss_pred hcCCCeEEECCCCCcce--ecHhhhhCCCCCCEEEC
Confidence 37788888888765331 1 123567888888887
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=96.89 E-value=0.0008 Score=57.05 Aligned_cols=73 Identities=11% Similarity=0.122 Sum_probs=49.0
Q ss_pred ceecccCccccCCCCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCccEEEEEee
Q 043541 20 KYIPQTYCKLDSHTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMVRNE 96 (301)
Q Consensus 20 ~~~~~~~C~l~~~~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i~~C 96 (301)
.++..++..+..-... -.++|+.|+|.+..+.. +..-+.+++.|+.|+|+++ .+..+. +.++++|+.|++++.
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCch--hHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC
Confidence 4566666665541211 25789999999998763 2234578899999999885 444432 456778888888765
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=96.87 E-value=0.00059 Score=57.60 Aligned_cols=120 Identities=11% Similarity=0.080 Sum_probs=72.6
Q ss_pred ceecccCccccCCCCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE---EcCCCCCccEEEEEee
Q 043541 20 KYIPQTYCKLDSHTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL---EFLNLGKLSKFMVRNE 96 (301)
Q Consensus 20 ~~~~~~~C~l~~~~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L---~i~~~~~Lk~L~i~~C 96 (301)
.++.+++..+..-... -.++|+.|+|.+..+.+-.-.....+.+.|+.|+|+++ .+..+ .+.++++|+.|++++.
T Consensus 11 ~~l~~s~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRD-IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccC-CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCC
Confidence 5667777766542221 24589999999998754111123567889999999886 44433 3456788999998865
Q ss_pred CCCceeEe----ecCceeEEEEcCCCCC-C-ccccccccccceEeecccccc
Q 043541 97 DRLARVSI----CGPNVRLVDISSLHAP-C-GINVALCKNLKEFKLFKISIT 142 (301)
Q Consensus 97 ~~l~~i~i----~ap~L~~f~~~g~~~~-~-~i~~~~c~~Lk~L~L~~~~It 142 (301)
. ++.+.- ..++|++++..+..-. . ...+...++|+.|++.++.++
T Consensus 89 ~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 K-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp C-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred c-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 3 333321 2366666666655411 1 223555666777777666533
No 132
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=96.85 E-value=0.00076 Score=62.55 Aligned_cols=121 Identities=15% Similarity=0.172 Sum_probs=81.1
Q ss_pred ceecccCccccCC-CC-CC-CCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCccEEEE
Q 043541 20 KYIPQTYCKLDSH-TR-NV-TLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMV 93 (301)
Q Consensus 20 ~~~~~~~C~l~~~-~~-~~-~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i 93 (301)
+++.+++..+..- .. .. ++++|+.|+|.++.+.+-. .....+++.|++|+|+++ .+..+. +.++++|+.|++
T Consensus 42 ~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 42 ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp SEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEEC
T ss_pred CEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC-hhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCEEEC
Confidence 4667777766541 12 22 7899999999999876411 113457899999999996 466653 456789999999
Q ss_pred EeeCCCceeE---e-ecCceeEEEEcCCC-CCCccc-c---ccccccceEeecccccch
Q 043541 94 RNEDRLARVS---I-CGPNVRLVDISSLH-APCGIN-V---ALCKNLKEFKLFKISITN 143 (301)
Q Consensus 94 ~~C~~l~~i~---i-~ap~L~~f~~~g~~-~~~~i~-~---~~c~~Lk~L~L~~~~It~ 143 (301)
+++. ++.+. + ..++|+.++..+.. ..+... + ..+++|+.|+|+++.++.
T Consensus 120 ~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 120 YNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CSSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CCCc-ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 8764 33332 1 35789999888765 222222 2 568899999999887553
No 133
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=96.84 E-value=0.00072 Score=58.39 Aligned_cols=120 Identities=12% Similarity=0.116 Sum_probs=82.5
Q ss_pred ceecccCccccCC-C-CCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCccEEEEE
Q 043541 20 KYIPQTYCKLDSH-T-RNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMVR 94 (301)
Q Consensus 20 ~~~~~~~C~l~~~-~-~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i~ 94 (301)
..+.+++..+..- . ...++++|+.|+|.++.+..- ...-..+++.|+.|+|+++ .+..+. +.++++|+.|+++
T Consensus 35 ~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp CEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEEECC
Confidence 4566666666541 1 235689999999999987631 1122467899999999986 454442 3567899999999
Q ss_pred eeCCCceeE---e-ecCceeEEEEcCCC-CCCc-cccccccccceEeecccccc
Q 043541 95 NEDRLARVS---I-CGPNVRLVDISSLH-APCG-INVALCKNLKEFKLFKISIT 142 (301)
Q Consensus 95 ~C~~l~~i~---i-~ap~L~~f~~~g~~-~~~~-i~~~~c~~Lk~L~L~~~~It 142 (301)
++. ++.+. + ..++|+.++..+.. .... ..+..+++|+.|++.++.++
T Consensus 113 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 113 ANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 764 33332 1 35889999998876 2222 23678899999999988643
No 134
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.65 E-value=0.0023 Score=63.82 Aligned_cols=111 Identities=12% Similarity=0.058 Sum_probs=73.3
Q ss_pred cceecccCccccCCCCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEEcCCCCCccEEEEEeeCC
Q 043541 19 SKYIPQTYCKLDSHTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLEFLNLGKLSKFMVRNEDR 98 (301)
Q Consensus 19 ~~~~~~~~C~l~~~~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~i~~~~~Lk~L~i~~C~~ 98 (301)
=+++.++++.+..- +..+++|+.|+|.++.++. +.. +. ..|+.|+|+++. +..+.- .+++|+.|+++++.
T Consensus 82 L~~L~Ls~N~l~~i--p~~l~~L~~L~Ls~N~l~~--ip~-l~--~~L~~L~Ls~N~-l~~lp~-~l~~L~~L~Ls~N~- 151 (571)
T 3cvr_A 82 ITVLEITQNALISL--PELPASLEYLDACDNRLST--LPE-LP--ASLKHLDVDNNQ-LTMLPE-LPALLEYINADNNQ- 151 (571)
T ss_dssp CSEEECCSSCCSCC--CCCCTTCCEEECCSSCCSC--CCC-CC--TTCCEEECCSSC-CSCCCC-CCTTCCEEECCSSC-
T ss_pred CCEEECcCCCCccc--ccccCCCCEEEccCCCCCC--cch-hh--cCCCEEECCCCc-CCCCCC-cCccccEEeCCCCc-
Confidence 35677777777641 2458899999999987754 222 22 289999998863 333322 46788999888764
Q ss_pred CceeEeecCceeEEEEcCCC-CCCccccccccccceEeecccccc
Q 043541 99 LARVSICGPNVRLVDISSLH-APCGINVALCKNLKEFKLFKISIT 142 (301)
Q Consensus 99 l~~i~i~ap~L~~f~~~g~~-~~~~i~~~~c~~Lk~L~L~~~~It 142 (301)
++.+.-..++|+.++..++. ..+.. +. ++|+.|+|+++.|+
T Consensus 152 l~~lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 152 LTMLPELPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp CSCCCCCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS
T ss_pred cCcCCCcCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC
Confidence 33333245788888887775 22222 33 78999999888766
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=96.47 E-value=0.0026 Score=52.44 Aligned_cols=118 Identities=14% Similarity=0.059 Sum_probs=70.1
Q ss_pred eecccCccccCCCCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCccEEEEEeeC
Q 043541 21 YIPQTYCKLDSHTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMVRNED 97 (301)
Q Consensus 21 ~~~~~~C~l~~~~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i~~C~ 97 (301)
.+..++..+..-. ..-.++|+.|+|.++.+.+ .......+++.|+.|+++++ .+..+. +.++++|+.|+++++.
T Consensus 11 ~l~~~~~~l~~~p-~~~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 11 EIRCNSKGLTSVP-TGIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp EEECCSSCCSSCC-TTCCTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCCccCC-CCCCCCCcEEEeCCCcccE-eCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCC
Confidence 4455555544311 2235789999999987753 11123467889999999886 444432 3457888888888763
Q ss_pred CCceeEe----ecCceeEEEEcCCC-CCCcc-ccccccccceEeecccccc
Q 043541 98 RLARVSI----CGPNVRLVDISSLH-APCGI-NVALCKNLKEFKLFKISIT 142 (301)
Q Consensus 98 ~l~~i~i----~ap~L~~f~~~g~~-~~~~i-~~~~c~~Lk~L~L~~~~It 142 (301)
++.+.- ..++|++++..+.. ..... .+..+++|+.|++.++.++
T Consensus 88 -l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 88 -LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred -ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 322221 24667777766554 22221 2456677777777776644
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.37 E-value=0.0023 Score=60.75 Aligned_cols=162 Identities=14% Similarity=0.175 Sum_probs=79.9
Q ss_pred CCCCCCcEEEecccccCh---HHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCccEEEEEeeCCCceeEee---c
Q 043541 36 VTLSSLRELGLFKCAAND---EAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDRLARVSIC---G 106 (301)
Q Consensus 36 ~~~~sLk~L~L~~c~i~d---~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i~~C~~l~~i~i~---a 106 (301)
.+|++|+.+.|.+..+.. .++ .|..|+++.|.. +++.+. ..+|++|+.+.+.. +++.+.-. .
T Consensus 177 ~~c~~L~~l~l~~n~l~~I~~~aF-----~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~ 247 (401)
T 4fdw_A 177 YYCYNLKKADLSKTKITKLPASTF-----VYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE 247 (401)
T ss_dssp TTCTTCCEEECTTSCCSEECTTTT-----TTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT
T ss_pred hCcccCCeeecCCCcceEechhhE-----eecccCEEEeCC--chheehhhHhhCCCCCCEEecCC--CccCcccccccc
Confidence 345555555555433221 211 145555555542 344442 33566777777653 34443322 1
Q ss_pred CceeEEEEcCCCCCC-ccccccccccceEeecccccchHH---H-HHHhccCCCccEEEeeeecc-cceEEeccCCCcee
Q 043541 107 PNVRLVDISSLHAPC-GINVALCKNLKEFKLFKISITNEW---L-CNQFSELPFLEYVEIFRCMK-IRKLLVRSCNTLDE 180 (301)
Q Consensus 107 p~L~~f~~~g~~~~~-~i~~~~c~~Lk~L~L~~~~It~~~---l-~~L~~~cp~LE~L~L~~~l~-I~~L~l~~C~~L~~ 180 (301)
.+|+.+.+....... .-.|.+|++|+.+.+.+..++.+. + ...+.+|++|+.+.+-..++ |..=-..+|.+|+.
T Consensus 248 ~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~ 327 (401)
T 4fdw_A 248 SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQ 327 (401)
T ss_dssp CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCE
T ss_pred CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccE
Confidence 456666653332111 224778888888888665433111 1 23456788888887722111 11112345666777
Q ss_pred EEecCCCeeEEEEccceEEecCCccccceEEEE
Q 043541 181 FKLDTPNLSVFDYEGDMVSFSSNALALSETSLF 213 (301)
Q Consensus 181 i~i~aPnL~sf~y~g~~~~~~~~~~~l~~~~l~ 213 (301)
+.+.. |+.++. . -.|.+. .++++.+.
T Consensus 328 l~lp~-~l~~I~---~--~aF~~~-~L~~l~l~ 353 (401)
T 4fdw_A 328 LTIPA-NVTQIN---F--SAFNNT-GIKEVKVE 353 (401)
T ss_dssp EEECT-TCCEEC---T--TSSSSS-CCCEEEEC
T ss_pred EEECc-cccEEc---H--HhCCCC-CCCEEEEc
Confidence 76633 443332 1 134454 66666664
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.36 E-value=0.0076 Score=54.83 Aligned_cols=99 Identities=12% Similarity=0.060 Sum_probs=58.3
Q ss_pred CCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCccEEEEEeeCCCceeEe----ecCcee
Q 043541 38 LSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDRLARVSI----CGPNVR 110 (301)
Q Consensus 38 ~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i~~C~~l~~i~i----~ap~L~ 110 (301)
..+++.+.+.+. +.......+...|+.|++++|.++ +++.+. ..+|.+|+.+++.+ +++.|.- ++++|+
T Consensus 201 ~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~--ni~~I~~~aF~~~~~L~ 276 (329)
T 3sb4_A 201 PRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPH--NLKTIGQRVFSNCGRLA 276 (329)
T ss_dssp GGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCC
T ss_pred ccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCc--ccceehHHHhhCChhcc
Confidence 444556666554 334666677778999999999874 465553 45688888888874 3555432 234555
Q ss_pred -EEEEcCCCCCC-ccccccccccceEeecccc
Q 043541 111 -LVDISSLHAPC-GINVALCKNLKEFKLFKIS 140 (301)
Q Consensus 111 -~f~~~g~~~~~-~i~~~~c~~Lk~L~L~~~~ 140 (301)
.+.+....... .-.|.+|.+|+.+.+....
T Consensus 277 ~~l~l~~~l~~I~~~aF~~c~~L~~l~l~~n~ 308 (329)
T 3sb4_A 277 GTLELPASVTAIEFGAFMGCDNLRYVLATGDK 308 (329)
T ss_dssp EEEEECTTCCEECTTTTTTCTTEEEEEECSSC
T ss_pred EEEEEcccceEEchhhhhCCccCCEEEeCCCc
Confidence 55554322111 1235566666666664443
No 138
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.13 E-value=0.019 Score=57.10 Aligned_cols=125 Identities=17% Similarity=0.134 Sum_probs=80.3
Q ss_pred ceecccCccccCCCCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEEcCCCCCccEEEEEeeC--
Q 043541 20 KYIPQTYCKLDSHTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLEFLNLGKLSKFMVRNED-- 97 (301)
Q Consensus 20 ~~~~~~~C~l~~~~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~i~~~~~Lk~L~i~~C~-- 97 (301)
+++.++++.+..-.. -..+|+.|+|.++.++. +.. .++.|+.|+|+++. +..+.- .+++|+.|+++++.
T Consensus 103 ~~L~Ls~N~l~~ip~--l~~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~-l~~lp~-~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 103 EYLDACDNRLSTLPE--LPASLKHLDVDNNQLTM--LPE---LPALLEYINADNNQ-LTMLPE-LPTSLEVLSVRNNQLT 173 (571)
T ss_dssp CEEECCSSCCSCCCC--CCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSC-CSCCCC-CCTTCCEEECCSSCCS
T ss_pred CEEEccCCCCCCcch--hhcCCCEEECCCCcCCC--CCC---cCccccEEeCCCCc-cCcCCC-cCCCcCEEECCCCCCC
Confidence 466777777654111 12289999999998764 222 68899999998863 433322 45789999998774
Q ss_pred CCceeEeecCceeEEEEcCCC-CCCcccccccccc-------ceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 98 RLARVSICGPNVRLVDISSLH-APCGINVALCKNL-------KEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 98 ~l~~i~i~ap~L~~f~~~g~~-~~~~i~~~~c~~L-------k~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
.+.. +. ++|+.++..++. ..+.. +.. +| +.|+|.++.|+. +..-+..+++|+.|++
T Consensus 174 ~lp~--l~-~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~L 237 (571)
T 3cvr_A 174 FLPE--LP-ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITH--IPENILSLDPTCTIIL 237 (571)
T ss_dssp CCCC--CC-TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCC--CCGGGGGSCTTEEEEC
T ss_pred Ccch--hh-CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCccee--cCHHHhcCCCCCEEEe
Confidence 3333 22 889998888775 22222 322 67 999999888762 3333445888888887
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.10 E-value=0.0023 Score=65.42 Aligned_cols=105 Identities=12% Similarity=0.059 Sum_probs=71.0
Q ss_pred CCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEE--EcCCCCCccEEEEEeeCCCceeE--e-ecCce
Q 043541 35 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSL--EFLNLGKLSKFMVRNEDRLARVS--I-CGPNV 109 (301)
Q Consensus 35 ~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L--~i~~~~~Lk~L~i~~C~~l~~i~--i-~ap~L 109 (301)
..++++|+.|+|.++.+.+ +..-+.+++.|+.|+|+++ .+..+ .+.++++|+.|+++++. ++.+. + ..++|
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L 295 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQL 295 (727)
T ss_dssp --CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTC
T ss_pred hccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCC
Confidence 3457889999998887753 1112337888999999886 34433 24567888888888764 33321 1 35788
Q ss_pred eEEEEcCCC-CCCccccccccccceEeecccccch
Q 043541 110 RLVDISSLH-APCGINVALCKNLKEFKLFKISITN 143 (301)
Q Consensus 110 ~~f~~~g~~-~~~~i~~~~c~~Lk~L~L~~~~It~ 143 (301)
++|+..++. ..+...++.+++|+.|+|+++.++.
T Consensus 296 ~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 296 KYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp SEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred CEEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence 888887765 3334457888999999999887664
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.06 E-value=0.0017 Score=66.44 Aligned_cols=101 Identities=20% Similarity=0.325 Sum_probs=71.1
Q ss_pred HHHHhcCCcccEEeeecCCCceEE--EcCCCCCccEEEEEeeCCCceeE--e-ecCceeEEEEcCCC-CCCccccccccc
Q 043541 57 RDIVAGCPLIECLKIIDCRGLKSL--EFLNLGKLSKFMVRNEDRLARVS--I-CGPNVRLVDISSLH-APCGINVALCKN 130 (301)
Q Consensus 57 ~~Lis~Cp~LE~L~L~~C~~l~~L--~i~~~~~Lk~L~i~~C~~l~~i~--i-~ap~L~~f~~~g~~-~~~~i~~~~c~~ 130 (301)
.....+.+.|+.|+|+++. +..+ .+.++++|+.|+++++. ++.+. + ..++|+.|+..+.. ..+...++++++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp -----CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred hhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence 4456778899999999874 3333 23457899999998774 33332 2 46889999998876 334456788999
Q ss_pred cceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 131 LKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 131 Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
|+.|+|.++.++ .+..-+.++++|+.|++
T Consensus 295 L~~L~L~~N~l~--~lp~~~~~l~~L~~L~L 323 (727)
T 4b8c_D 295 LKYFYFFDNMVT--TLPWEFGNLCNLQFLGV 323 (727)
T ss_dssp CSEEECCSSCCC--CCCSSTTSCTTCCCEEC
T ss_pred CCEEECCCCCCC--ccChhhhcCCCccEEeC
Confidence 999999999876 33334678899999998
No 141
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.59 E-value=0.0042 Score=52.23 Aligned_cols=111 Identities=9% Similarity=0.056 Sum_probs=70.4
Q ss_pred ceecccCc-cccCC------CCCCCCCCCcEEEecccccChHHHHH---HHhcCCcccEEeeecCC----CceEE--EcC
Q 043541 20 KYIPQTYC-KLDSH------TRNVTLSSLRELGLFKCAANDEAIRD---IVAGCPLIECLKIIDCR----GLKSL--EFL 83 (301)
Q Consensus 20 ~~~~~~~C-~l~~~------~~~~~~~sLk~L~L~~c~i~d~~L~~---Lis~Cp~LE~L~L~~C~----~l~~L--~i~ 83 (301)
..+.+++| .+... ......++|++|+|+++.+.|++... .+..++.|++|+|+++. |...+ .+.
T Consensus 39 ~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~ 118 (185)
T 1io0_A 39 EEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQ 118 (185)
T ss_dssp CEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGG
T ss_pred CEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHH
Confidence 35667777 66531 01134689999999999999865544 45677899999999975 22212 123
Q ss_pred CCCCccEEEE--EeeCCCceeEeecCceeEEEEcCCCCCCccccccccccceEeecccccchHH
Q 043541 84 NLGKLSKFMV--RNEDRLARVSICGPNVRLVDISSLHAPCGINVALCKNLKEFKLFKISITNEW 145 (301)
Q Consensus 84 ~~~~Lk~L~i--~~C~~l~~i~i~ap~L~~f~~~g~~~~~~i~~~~c~~Lk~L~L~~~~It~~~ 145 (301)
..++|++|++ +++ .+.+-... .+.-.+...++|++|+|+++.|++++
T Consensus 119 ~n~~L~~L~L~~~~N-~i~~~g~~--------------~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 119 SNTSLIELRIDNQSQ-PLGNNVEM--------------EIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp GCSSCCEEECCCCSS-CCCHHHHH--------------HHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred hCCCceEEEecCCCC-CCCHHHHH--------------HHHHHHHhCCCcCEEeccCCCCChHH
Confidence 3467888888 433 23221100 00112455678999999999988775
No 142
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=95.37 E-value=0.0086 Score=49.24 Aligned_cols=51 Identities=18% Similarity=0.101 Sum_probs=29.4
Q ss_pred CcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCccEEEEEee
Q 043541 41 LRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMVRNE 96 (301)
Q Consensus 41 Lk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i~~C 96 (301)
.+.+++.+..+.+-. ..-.+.|++|+++++ ++..+. +.++++|+.|+++++
T Consensus 9 ~~~l~~~~~~l~~~p----~~~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n 62 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVP----TGIPSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQN 62 (177)
T ss_dssp TTEEECCSSCCSSCC----TTCCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS
T ss_pred CCEEEecCCCCccCC----CCCCCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCC
Confidence 355666655543200 112367888888885 344332 345677888888765
No 143
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=95.14 E-value=0.016 Score=57.39 Aligned_cols=71 Identities=15% Similarity=0.110 Sum_probs=41.6
Q ss_pred CccEEEEEeeC--CCceeEeecCceeEEEEcCCC-CCCccccccccccceEeecccccchHHHHHHhccCCCccEEEe
Q 043541 87 KLSKFMVRNED--RLARVSICGPNVRLVDISSLH-APCGINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 87 ~Lk~L~i~~C~--~l~~i~i~ap~L~~f~~~g~~-~~~~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L~L 161 (301)
+|+.|+++++. ++.. .-..++|+.++..+.. ..++..++++++|+.|+|+++.++. +. -+.++++|+.|++
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEEC
Confidence 45556665542 2222 1134567777776654 2233456777778888887777664 33 4566777777776
No 144
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.03 E-value=0.015 Score=52.44 Aligned_cols=88 Identities=16% Similarity=0.151 Sum_probs=53.7
Q ss_pred HHHHHHHhcCCcccEEeeecCCCceEEE-c----CCCCCccEEEEEeeCCCceeEeecCceeEEEEcCCCCCCccccccc
Q 043541 54 EAIRDIVAGCPLIECLKIIDCRGLKSLE-F----LNLGKLSKFMVRNEDRLARVSICGPNVRLVDISSLHAPCGINVALC 128 (301)
Q Consensus 54 ~~L~~Lis~Cp~LE~L~L~~C~~l~~L~-i----~~~~~Lk~L~i~~C~~l~~i~i~ap~L~~f~~~g~~~~~~i~~~~c 128 (301)
..++....++|.|+.|+|++. .+..+. + ..+++|+.|++++- .++.+. .. ..+.+.
T Consensus 160 ~~l~i~~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~----------------~l-~~l~~l 220 (267)
T 3rw6_A 160 ATLRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER----------------EL-DKIKGL 220 (267)
T ss_dssp HHHHHHHHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG----------------GG-GGGTTS
T ss_pred HHHHHHHhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCch----------------hh-hhcccC
Confidence 444555578999999999884 343321 1 13566777766532 111110 00 012233
Q ss_pred cccceEeecccccch------HHHHHHhccCCCccEEEe
Q 043541 129 KNLKEFKLFKISITN------EWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 129 ~~Lk~L~L~~~~It~------~~l~~L~~~cp~LE~L~L 161 (301)
+|+.|.|.++.+++ +.....+..+|.|+.|+-
T Consensus 221 -~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 221 -KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp -CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred -CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 89999999988764 344567888999998873
No 145
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=94.99 E-value=0.0096 Score=50.22 Aligned_cols=101 Identities=10% Similarity=0.017 Sum_probs=65.1
Q ss_pred ceecccCccccCC-CCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCccEEEEEe
Q 043541 20 KYIPQTYCKLDSH-TRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMVRN 95 (301)
Q Consensus 20 ~~~~~~~C~l~~~-~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i~~ 95 (301)
+++.+++..+..- ....++++|+.|+|.++.+.+- ......+.+.|++|+|++. .+..+. +.++++|+.|++++
T Consensus 34 ~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L~~ 111 (193)
T 2wfh_A 34 TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLSLHG 111 (193)
T ss_dssp CEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEe-CHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEECCC
Confidence 4566666666541 2335689999999999988641 1123457899999999986 454442 44567888888875
Q ss_pred eCCCceeEeecCceeEEEEcCCCCCCccccccccccceEeeccccc
Q 043541 96 EDRLARVSICGPNVRLVDISSLHAPCGINVALCKNLKEFKLFKISI 141 (301)
Q Consensus 96 C~~l~~i~i~ap~L~~f~~~g~~~~~~i~~~~c~~Lk~L~L~~~~I 141 (301)
.. ++.+. .-.+..+++|+.|++.++.+
T Consensus 112 N~-l~~~~------------------~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 112 ND-ISVVP------------------EGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp SC-CCBCC------------------TTTTTTCTTCCEEECCSSCE
T ss_pred CC-CCeeC------------------hhhhhcCccccEEEeCCCCe
Confidence 42 22111 01255678889999887764
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.24 E-value=0.048 Score=50.78 Aligned_cols=14 Identities=7% Similarity=0.128 Sum_probs=9.2
Q ss_pred CCCCCCcEEEeccc
Q 043541 36 VTLSSLRELGLFKC 49 (301)
Q Consensus 36 ~~~~sLk~L~L~~c 49 (301)
.++.+|+.+.+..-
T Consensus 250 ~~~~~l~~~~~~~~ 263 (394)
T 4fs7_A 250 YGCTDLESISIQNN 263 (394)
T ss_dssp TTCSSCCEEEECCT
T ss_pred cccccceeEEcCCC
Confidence 45777777777543
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=93.95 E-value=0.036 Score=45.57 Aligned_cols=101 Identities=14% Similarity=0.123 Sum_probs=59.4
Q ss_pred ceecccCccccCCCCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCccEEEEEee
Q 043541 20 KYIPQTYCKLDSHTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMVRNE 96 (301)
Q Consensus 20 ~~~~~~~C~l~~~~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i~~C 96 (301)
..+.+++..+..-.... .++|+.|+|.+..+..- ......+.+.|+.|+|++. .+..+. +.++++|+.|++++.
T Consensus 12 ~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~-~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKL-EPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCcc-ChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC
Confidence 35566666655412222 57888999988877531 0122456778888888875 444432 234566777766643
Q ss_pred CCCceeEeecCceeEEEEcCCCCCCccccccccccceEeecccccc
Q 043541 97 DRLARVSICGPNVRLVDISSLHAPCGINVALCKNLKEFKLFKISIT 142 (301)
Q Consensus 97 ~~l~~i~i~ap~L~~f~~~g~~~~~~i~~~~c~~Lk~L~L~~~~It 142 (301)
. ++.+. ...+..+++|+.|+|.++.++
T Consensus 89 ~-l~~~~------------------~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 Q-LKSIP------------------RGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp C-CCCCC------------------TTTTTTCTTCCEEECCSSCBC
T ss_pred c-cCEeC------------------HHHhcCCCCCCEEEeCCCCCC
Confidence 1 21110 113667889999999888654
No 148
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=93.83 E-value=0.041 Score=46.01 Aligned_cols=96 Identities=16% Similarity=0.160 Sum_probs=66.6
Q ss_pred ceecccCccccCCCC---CCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCccEEEE
Q 043541 20 KYIPQTYCKLDSHTR---NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMV 93 (301)
Q Consensus 20 ~~~~~~~C~l~~~~~---~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i 93 (301)
+++.+++..+..-.. ..++++|++|+|+++.+.+- ...-..+.+.|+.|+|++. .+..+. +.++++|+.|++
T Consensus 32 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEEC
T ss_pred CEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCEEEC
Confidence 466777777654221 35699999999999988641 1123457899999999996 565553 456789999999
Q ss_pred EeeCCCceeE---e-ecCceeEEEEcCCC
Q 043541 94 RNEDRLARVS---I-CGPNVRLVDISSLH 118 (301)
Q Consensus 94 ~~C~~l~~i~---i-~ap~L~~f~~~g~~ 118 (301)
++.. ++.+. + ..++|+.++..+..
T Consensus 110 ~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 110 YDNQ-ISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CSSC-CCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCCc-CCeeCHHHhhcCCCCCEEEeCCCC
Confidence 9763 33321 1 35789999887764
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=93.68 E-value=0.12 Score=42.65 Aligned_cols=101 Identities=13% Similarity=0.113 Sum_probs=57.4
Q ss_pred ceecccCccccCCCCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCccEEEEEee
Q 043541 20 KYIPQTYCKLDSHTRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMVRNE 96 (301)
Q Consensus 20 ~~~~~~~C~l~~~~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i~~C 96 (301)
..+.+++..+..-.... .++|+.|+|.+..+.+ .......+.+.|+.|+|++. .+..+. +.++++|+.|++++.
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITK-LEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccc-cCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC
Confidence 45666666664312222 4788888888887653 11123456777888888775 444432 234566666666643
Q ss_pred CCCceeEeecCceeEEEEcCCCCCCccccccccccceEeecccccc
Q 043541 97 DRLARVSICGPNVRLVDISSLHAPCGINVALCKNLKEFKLFKISIT 142 (301)
Q Consensus 97 ~~l~~i~i~ap~L~~f~~~g~~~~~~i~~~~c~~Lk~L~L~~~~It 142 (301)
. ++.+. ...+.++++|+.|+|.++.++
T Consensus 92 ~-l~~l~------------------~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 H-LKSIP------------------RGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp C-CCCCC------------------TTTTTTCTTCSEEECCSSCBC
T ss_pred c-cceeC------------------HHHhccccCCCEEEeCCCCcc
Confidence 1 21110 012566778888888877644
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=91.75 E-value=0.27 Score=45.62 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=26.1
Q ss_pred ccccccccceEeeccc-c-cchHHHHHHhccCCCccEEEeeeec-ccceEEeccCCCceeEEec
Q 043541 124 NVALCKNLKEFKLFKI-S-ITNEWLCNQFSELPFLEYVEIFRCM-KIRKLLVRSCNTLDEFKLD 184 (301)
Q Consensus 124 ~~~~c~~Lk~L~L~~~-~-It~~~l~~L~~~cp~LE~L~L~~~l-~I~~L~l~~C~~L~~i~i~ 184 (301)
.|.+|.+|+++.+... . |.+.+ +.+|.+|+.+.+-... .+. ....|..|+.+.+.
T Consensus 329 aF~~C~~L~~i~ip~sv~~I~~~a----F~~C~~L~~i~~~~~~~~~~--~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 329 AFAGCEQLERIAIPSSVTKIPESA----FSNCTALNNIEYSGSRSQWN--AISTDSGLQNLPVA 386 (394)
T ss_dssp TTTTCTTCCEEEECTTCCBCCGGG----GTTCTTCCEEEESSCHHHHH--TCBCCCCC------
T ss_pred HhhCCCCCCEEEECcccCEEhHhH----hhCCCCCCEEEECCceeehh--hhhccCCCCEEEeC
Confidence 3667777777777432 2 44433 5567777777762111 110 12445566655543
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=91.05 E-value=0.33 Score=45.70 Aligned_cols=143 Identities=10% Similarity=0.134 Sum_probs=88.3
Q ss_pred CCCCCCCCcEEEeccc-c-cChHHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCccEEEEEeeCCCceeEe----
Q 043541 34 RNVTLSSLRELGLFKC-A-ANDEAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDRLARVSI---- 104 (301)
Q Consensus 34 ~~~~~~sLk~L~L~~c-~-i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i~~C~~l~~i~i---- 104 (301)
++..+.+|+.+.|..- . +.+.+ ..+|+.|+++++.. +++.+. ..+ .+|+.+.+.+ +++.+.-
T Consensus 198 ~aF~~~~L~~l~lp~~l~~I~~~a----F~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~ 268 (401)
T 4fdw_A 198 STFVYAGIEEVLLPVTLKEIGSQA----FLKTSQLKTIEIPE--NVSTIGQEAFRE-SGITTVKLPN--GVTNIASRAFY 268 (401)
T ss_dssp TTTTTCCCSEEECCTTCCEECTTT----TTTCTTCCCEECCT--TCCEECTTTTTT-CCCSEEEEET--TCCEECTTTTT
T ss_pred hhEeecccCEEEeCCchheehhhH----hhCCCCCCEEecCC--CccCcccccccc-CCccEEEeCC--CccEEChhHhh
Confidence 3444678999988643 1 12232 45899999999976 566653 233 5788888853 4555542
Q ss_pred ecCceeEEEEcCCCCC------C-ccccccccccceEeeccc-c-cchHHHHHHhccCCCccEEEeeeecc-cceEEecc
Q 043541 105 CGPNVRLVDISSLHAP------C-GINVALCKNLKEFKLFKI-S-ITNEWLCNQFSELPFLEYVEIFRCMK-IRKLLVRS 174 (301)
Q Consensus 105 ~ap~L~~f~~~g~~~~------~-~i~~~~c~~Lk~L~L~~~-~-It~~~l~~L~~~cp~LE~L~L~~~l~-I~~L~l~~ 174 (301)
++++|+++.+.+.... . .-.|.+|.+|+.+.+... . |.+. .+.+|.+|+.+.+-..++ |..=-..+
T Consensus 269 ~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~----aF~~c~~L~~l~lp~~l~~I~~~aF~~ 344 (401)
T 4fdw_A 269 YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQG----LLGGNRKVTQLTIPANVTQINFSAFNN 344 (401)
T ss_dssp TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTT----TTTTCCSCCEEEECTTCCEECTTSSSS
T ss_pred CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhh----hhcCCCCccEEEECccccEEcHHhCCC
Confidence 4678888887665421 1 224889999999999743 1 4443 357799999998822211 11112345
Q ss_pred CCCceeEEecCCCeeE
Q 043541 175 CNTLDEFKLDTPNLSV 190 (301)
Q Consensus 175 C~~L~~i~i~aPnL~s 190 (301)
| +|+.+.+.+.++..
T Consensus 345 ~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 345 T-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp S-CCCEEEECCSSCCB
T ss_pred C-CCCEEEEcCCCCcc
Confidence 6 67777776644433
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=90.40 E-value=0.3 Score=44.09 Aligned_cols=58 Identities=19% Similarity=0.157 Sum_probs=33.0
Q ss_pred CCCCCCcEEEecc-cccChHHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCccEEEEEe
Q 043541 36 VTLSSLRELGLFK-CAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMVRN 95 (301)
Q Consensus 36 ~~~~sLk~L~L~~-c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i~~ 95 (301)
.++++|+.|+|.+ ..+.. .....+.+.+.|+.|+|++. .+..+. +.++++|+.|++++
T Consensus 28 ~~~~~L~~L~l~~~n~l~~-~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 28 PGAENLTELYIENQQHLQH-LELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CSCSCCSEEECCSCSSCCE-ECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS
T ss_pred CCCCCeeEEEccCCCCCCC-cChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC
Confidence 3466677777775 55532 00112346677777777774 455542 34456666666664
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=89.02 E-value=0.17 Score=41.42 Aligned_cols=74 Identities=19% Similarity=0.123 Sum_probs=51.8
Q ss_pred ceecccCccccCC-C-CCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCccEEEEE
Q 043541 20 KYIPQTYCKLDSH-T-RNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMVR 94 (301)
Q Consensus 20 ~~~~~~~C~l~~~-~-~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i~ 94 (301)
+++.+++..+..- . ...++++|++|+|.+..+.. .......+.+.|+.|+|++. .++.+. +.++++|+.|+++
T Consensus 33 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc-cChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEEeC
Confidence 5677888877652 1 23569999999999998763 11123467899999999985 454442 3456788888887
Q ss_pred e
Q 043541 95 N 95 (301)
Q Consensus 95 ~ 95 (301)
+
T Consensus 111 ~ 111 (170)
T 3g39_A 111 N 111 (170)
T ss_dssp S
T ss_pred C
Confidence 4
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=88.26 E-value=1 Score=41.61 Aligned_cols=97 Identities=18% Similarity=0.242 Sum_probs=54.3
Q ss_pred CCCCCccEEEEEeeCCCceeEe----ecCceeEEEEcCCCCCC-ccccccccccceEeeccc-c-cchHHHHHHhccCCC
Q 043541 83 LNLGKLSKFMVRNEDRLARVSI----CGPNVRLVDISSLHAPC-GINVALCKNLKEFKLFKI-S-ITNEWLCNQFSELPF 155 (301)
Q Consensus 83 ~~~~~Lk~L~i~~C~~l~~i~i----~ap~L~~f~~~g~~~~~-~i~~~~c~~Lk~L~L~~~-~-It~~~l~~L~~~cp~ 155 (301)
.+|.+|+++.+.. .+..+.- ++++|+.+.+....... .-.|.+|.+|+++.+... . |.+. .+.+|.+
T Consensus 262 ~~c~~L~~i~lp~--~~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~----aF~~C~~ 335 (394)
T 4gt6_A 262 DSCAYLASVKMPD--SVVSIGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQILDD----AFAGCEQ 335 (394)
T ss_dssp TTCSSCCEEECCT--TCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTT----TTTTCTT
T ss_pred eecccccEEeccc--ccceecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCCcccEehHh----HhhCCCC
Confidence 3566777776642 2222221 34566666654333111 224788999999998543 2 5554 3567999
Q ss_pred ccEEEeeeec-ccceEEeccCCCceeEEecC
Q 043541 156 LEYVEIFRCM-KIRKLLVRSCNTLDEFKLDT 185 (301)
Q Consensus 156 LE~L~L~~~l-~I~~L~l~~C~~L~~i~i~a 185 (301)
|+.+.+-..+ .|..--..+|.+|+.+.+..
T Consensus 336 L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 336 LERIAIPSSVTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp CCEEEECTTCCBCCGGGGTTCTTCCEEEESS
T ss_pred CCEEEECcccCEEhHhHhhCCCCCCEEEECC
Confidence 9999883221 12122245667777666543
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=88.08 E-value=0.6 Score=43.19 Aligned_cols=114 Identities=14% Similarity=0.181 Sum_probs=72.2
Q ss_pred CCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCccEEEEEeeCCCceeEe----ecC
Q 043541 35 NVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDRLARVSI----CGP 107 (301)
Q Consensus 35 ~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i~~C~~l~~i~i----~ap 107 (301)
..++++++........+.+.+ ..+|..|+++.+.. +++.+. ..+|.+|+++++.+ +++.|.- +|.
T Consensus 272 F~~~~~l~~~~~~~~~i~~~~----F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~ 343 (394)
T 4fs7_A 272 FYNCSGLKKVIYGSVIVPEKT----FYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCT 343 (394)
T ss_dssp TTTCTTCCEEEECSSEECTTT----TTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCT
T ss_pred cccccccceeccCceeecccc----cccccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCC
Confidence 356888888888776654432 46888999988854 455552 44677788777752 4555432 356
Q ss_pred ceeEEEEcCCCCCC-ccccccccccceEeecccccchHHHHHHhccCCCccEE
Q 043541 108 NVRLVDISSLHAPC-GINVALCKNLKEFKLFKISITNEWLCNQFSELPFLEYV 159 (301)
Q Consensus 108 ~L~~f~~~g~~~~~-~i~~~~c~~Lk~L~L~~~~It~~~l~~L~~~cp~LE~L 159 (301)
+|+++.+....... .-.|.+|.+|+++.+.... +. +..-+.+|+.|+.+
T Consensus 344 ~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~~~-~~--~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 344 SLSNINFPLSLRKIGANAFQGCINLKKVELPKRL-EQ--YRYDFEDTTKFKWI 393 (394)
T ss_dssp TCCEECCCTTCCEECTTTBTTCTTCCEEEEEGGG-GG--GGGGBCTTCEEEEE
T ss_pred CCCEEEECccccEehHHHhhCCCCCCEEEECCCC-EE--hhheecCCCCCcEE
Confidence 67776664332111 1248899999999996532 21 12347889888865
No 156
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=87.68 E-value=0.23 Score=40.86 Aligned_cols=74 Identities=18% Similarity=0.124 Sum_probs=51.3
Q ss_pred ceecccCccccCC--CCCCCCCCCcEEEecccccChHHHHHHHhcCCcccEEeeecCCCceEEE---cCCCCCccEEEEE
Q 043541 20 KYIPQTYCKLDSH--TRNVTLSSLRELGLFKCAANDEAIRDIVAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMVR 94 (301)
Q Consensus 20 ~~~~~~~C~l~~~--~~~~~~~sLk~L~L~~c~i~d~~L~~Lis~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i~ 94 (301)
+++.+++..+..- ....++++|+.|+|.+..+.. .......+.+.|+.|+|++. .++.+. +.++++|+.|+++
T Consensus 36 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECC
T ss_pred cEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEEECCCC-ccceeCHHHhccccCCCEEEeC
Confidence 4677888877652 123579999999999998764 11123467899999999985 454442 3456788888887
Q ss_pred e
Q 043541 95 N 95 (301)
Q Consensus 95 ~ 95 (301)
+
T Consensus 114 ~ 114 (174)
T 2r9u_A 114 N 114 (174)
T ss_dssp S
T ss_pred C
Confidence 4
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=84.79 E-value=1.1 Score=41.01 Aligned_cols=94 Identities=12% Similarity=0.221 Sum_probs=47.1
Q ss_pred CCCCccEEEEEeeCCCceeEe----ecCceeEEEEcCCCCCC-ccccccccccceEeecccc---cchHHHHHHhccCCC
Q 043541 84 NLGKLSKFMVRNEDRLARVSI----CGPNVRLVDISSLHAPC-GINVALCKNLKEFKLFKIS---ITNEWLCNQFSELPF 155 (301)
Q Consensus 84 ~~~~Lk~L~i~~C~~l~~i~i----~ap~L~~f~~~g~~~~~-~i~~~~c~~Lk~L~L~~~~---It~~~l~~L~~~cp~ 155 (301)
+|.+|+.+.+.. +++.+.- ++.+|+.+.+....... .-.+.+|.+|+++.+.... |.+. .+.+|.+
T Consensus 238 ~~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~----aF~~c~~ 311 (379)
T 4h09_A 238 GMKALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPR----VFMDCVK 311 (379)
T ss_dssp TCSSCCEEEECT--TCCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECTT----TTTTCTT
T ss_pred CCccceEEEcCC--CccEeCccccceeehhccccccccceeccccccccccccccccccccccceehhh----hhcCCCC
Confidence 355566555542 2333321 23455555554332111 1236778888888876543 3333 3466778
Q ss_pred ccEEEeeeecc-cceEEeccCCCceeEEe
Q 043541 156 LEYVEIFRCMK-IRKLLVRSCNTLDEFKL 183 (301)
Q Consensus 156 LE~L~L~~~l~-I~~L~l~~C~~L~~i~i 183 (301)
|+.+.+-..++ |..--..+|.+|+.+.+
T Consensus 312 L~~i~lp~~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 312 LSSVTLPTALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp CCEEECCTTCCEECTTTTTTCTTCCCCCC
T ss_pred CCEEEcCccccEEHHHHhhCCCCCCEEEE
Confidence 88777722111 11112345667776665
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=84.70 E-value=0.6 Score=42.09 Aligned_cols=81 Identities=21% Similarity=0.234 Sum_probs=57.1
Q ss_pred HhcCCcccEEeeecCCCceEEE---cCCCCCccEEEEEeeCCCceeEe----ecCceeEEEEcCCC-CCCccc-cccccc
Q 043541 60 VAGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDRLARVSI----CGPNVRLVDISSLH-APCGIN-VALCKN 130 (301)
Q Consensus 60 is~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i~~C~~l~~i~i----~ap~L~~f~~~g~~-~~~~i~-~~~c~~ 130 (301)
+...++|++|+|++...+..+. +.++++|+.|++++. +++.+.- ..++|+.|+..+.. ...... +... +
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~-~ 104 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-S 104 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-C
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccC-C
Confidence 6677889999999766777764 567899999999976 4554431 35788898888765 222222 2333 3
Q ss_pred cceEeecccccc
Q 043541 131 LKEFKLFKISIT 142 (301)
Q Consensus 131 Lk~L~L~~~~It 142 (301)
|+.|+|.++.++
T Consensus 105 L~~l~l~~N~~~ 116 (347)
T 2ifg_A 105 LQELVLSGNPLH 116 (347)
T ss_dssp CCEEECCSSCCC
T ss_pred ceEEEeeCCCcc
Confidence 899999887755
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=84.27 E-value=1.4 Score=40.17 Aligned_cols=93 Identities=15% Similarity=0.133 Sum_probs=54.8
Q ss_pred hcCCcccEEeeecCCCceEEE---cCCCCCccEEEEEeeCCCceeEe----ecCceeEEEEcCCC-CCC-cccccccccc
Q 043541 61 AGCPLIECLKIIDCRGLKSLE---FLNLGKLSKFMVRNEDRLARVSI----CGPNVRLVDISSLH-APC-GINVALCKNL 131 (301)
Q Consensus 61 s~Cp~LE~L~L~~C~~l~~L~---i~~~~~Lk~L~i~~C~~l~~i~i----~ap~L~~f~~~g~~-~~~-~i~~~~c~~L 131 (301)
.+|..|+++.+.. +++.+. ..+|.+|+.+.+.. +++.+.- ++++|+++.+.+.. ... .-.|.+|.+|
T Consensus 237 ~~~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 237 YGMKALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTCSSCCEEEECT--TCCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred cCCccceEEEcCC--CccEeCccccceeehhccccccc--cceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 4566666666643 344332 23467777777653 3444332 34667776664431 111 2247889999
Q ss_pred ceEeecc-cc-cchHHHHHHhccCCCccEEEe
Q 043541 132 KEFKLFK-IS-ITNEWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 132 k~L~L~~-~~-It~~~l~~L~~~cp~LE~L~L 161 (301)
+++.+.. .. |.+.+ +.+|.+|+.+.+
T Consensus 313 ~~i~lp~~l~~I~~~a----F~~C~~L~~i~i 340 (379)
T 4h09_A 313 SSVTLPTALKTIQVYA----FKNCKALSTISY 340 (379)
T ss_dssp CEEECCTTCCEECTTT----TTTCTTCCCCCC
T ss_pred CEEEcCccccEEHHHH----hhCCCCCCEEEE
Confidence 9999854 32 55443 567899988877
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=76.02 E-value=2.3 Score=36.25 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=12.5
Q ss_pred cccceEeecccccchHHHHHH
Q 043541 129 KNLKEFKLFKISITNEWLCNQ 149 (301)
Q Consensus 129 ~~Lk~L~L~~~~It~~~l~~L 149 (301)
+.|++|+|+++.|++++...+
T Consensus 98 ~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 98 PSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp SSCCEEECCSSBCCHHHHHHH
T ss_pred CccCeEecCCCcCCHHHHHHH
Confidence 456666666666666555544
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=55.88 E-value=6.6 Score=34.84 Aligned_cols=35 Identities=11% Similarity=0.150 Sum_probs=18.0
Q ss_pred cccccceEeecccccch-HHHHHHhccCCCccEEEe
Q 043541 127 LCKNLKEFKLFKISITN-EWLCNQFSELPFLEYVEI 161 (301)
Q Consensus 127 ~c~~Lk~L~L~~~~It~-~~l~~L~~~cp~LE~L~L 161 (301)
.+++|+.|+|+++.|++ +.+..++..+++|+.|++
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~L 203 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNL 203 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEEC
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEEC
Confidence 44556666665555443 223334445555665555
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=35.57 E-value=24 Score=29.73 Aligned_cols=108 Identities=18% Similarity=0.169 Sum_probs=62.0
Q ss_pred CCCCCcEEEeccc-ccChHHHHHHH---hcCCcccEEeeecCC----Cc----eEEEcCCCCCccEEEEEeeCCCceeEe
Q 043541 37 TLSSLRELGLFKC-AANDEAIRDIV---AGCPLIECLKIIDCR----GL----KSLEFLNLGKLSKFMVRNEDRLARVSI 104 (301)
Q Consensus 37 ~~~sLk~L~L~~c-~i~d~~L~~Li---s~Cp~LE~L~L~~C~----~l----~~L~i~~~~~Lk~L~i~~C~~l~~i~i 104 (301)
+-+.|+.|+|.+. .+.|++.+.++ ..-..|++|+|++|. |. +.|.. + .+|++|++++.. +.+-..
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~-N-~tL~~L~L~~N~-Ig~~Ga 115 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIET-S-PSLRVLNVESNF-LTPELL 115 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHH-C-SSCCEEECCSSB-CCHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhc-C-CccCeEecCCCc-CCHHHH
Confidence 4578999999986 88886655544 345689999999875 11 22222 2 689999998653 211100
Q ss_pred ecCceeEEEEcCCCCCCccccccccccceEeeccc---ccchHH---HHHHhccCCCccEEEe
Q 043541 105 CGPNVRLVDISSLHAPCGINVALCKNLKEFKLFKI---SITNEW---LCNQFSELPFLEYVEI 161 (301)
Q Consensus 105 ~ap~L~~f~~~g~~~~~~i~~~~c~~Lk~L~L~~~---~It~~~---l~~L~~~cp~LE~L~L 161 (301)
.+ +--.+..-..|+.|+|+.+ .++++. +...+..-+.|+.|++
T Consensus 116 ~a--------------la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l 164 (197)
T 1pgv_A 116 AR--------------LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGI 164 (197)
T ss_dssp HH--------------HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred HH--------------HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEec
Confidence 00 0001222234777777643 456543 3444455566666665
No 163
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=27.66 E-value=30 Score=25.66 Aligned_cols=13 Identities=23% Similarity=0.416 Sum_probs=5.9
Q ss_pred cccccccceEeec
Q 043541 125 VALCKNLKEFKLF 137 (301)
Q Consensus 125 ~~~c~~Lk~L~L~ 137 (301)
|.+|.+|+.+.+.
T Consensus 39 F~~C~~L~~i~~~ 51 (100)
T 2lz0_A 39 FSGCTALEKLILT 51 (100)
T ss_dssp STTCTTCCCEEEC
T ss_pred HhccCCccEEEEc
Confidence 3444444444443
Done!