BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043542
         (99 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2JYA|A Chain A, Nmr Solution Structure Of Protein Atu1810 From
          Agrobacterium Tumefaciens. Northeast Structural
          Genomics Consortium Target Atr23, Ontario Centre For
          Structural Proteomics Target Atc1776
          Length = 106

 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 4/88 (4%)

Query: 6  ARTASQQGSGKVGKWFINF-LSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARAFA 64
          A+TA Q G+ K   W + F     +  +P+MG+TS+ D    V    L F+++  A A+A
Sbjct: 12 AKTAMQSGTAKTNVWVLEFDAEVPRKIDPIMGYTSSSDMKQQVK---LTFETQEQAEAYA 68

Query: 65 EKHGWEYTVRKFHAPLLKPKSYGDNFKW 92
          ++ G EY V        K  SY DNF++
Sbjct: 69 QRKGIEYRVILPKEATRKVVSYTDNFRF 96


>pdb|2LJU|A Chain A, Solution Structure Of Putative Oxidoreductase From
           Ehrlichia Chaffeensis, Seattle Structural Genomics
           Center For Infectious Disease (Ssgcid)
          Length = 108

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 4/86 (4%)

Query: 6   ARTASQQGSGKVGKWFINFL-STQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARAFA 64
           A++  Q G  K+  W + F  S  ++  PLM WT + D    V    L F +   A A+A
Sbjct: 20  AKSTMQSGHSKLKAWKLEFEPSCTQYTEPLMNWTGSHDTKQQVC---LSFTTRELAIAYA 76

Query: 65  EKHGWEYTVRKFHAPLLKPKSYGDNF 90
             H  +YTV + +   + PKSY DNF
Sbjct: 77  VAHKIDYTVLQDNPRTIVPKSYADNF 102


>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
           With Doxepin
          Length = 452

 Score = 29.6 bits (65), Expect = 0.43,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 4/31 (12%)

Query: 7   RTASQQGSGKVGKWFINFLSTQKWENPLMGW 37
           RT ++  +  +G WF++FL    W  P++GW
Sbjct: 120 RTKTRASATILGAWFLSFL----WVIPILGW 146


>pdb|1DGJ|A Chain A, Crystal Structure Of The Aldehyde Oxidoreductase From
           Desulfovibrio Desulfuricans Atcc 27774
          Length = 907

 Score = 26.9 bits (58), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 8/40 (20%)

Query: 30  WENPLMGWTST---GDPYANVGEAGLCFDSEAAARAFAEK 66
           WE P++  +     GD  A V     C DSEA ARA AEK
Sbjct: 265 WERPILNDSKIFQYGDALAIV-----CADSEANARAAAEK 299


>pdb|1VCL|A Chain A, Crystal Structure Of Hemolytic Lectin Cel-iii
 pdb|1VCL|B Chain B, Crystal Structure Of Hemolytic Lectin Cel-iii
 pdb|2Z48|A Chain A, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
           With Galnac
 pdb|2Z48|B Chain B, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
           With Galnac
 pdb|2Z49|A Chain A, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
           With Methyl-Alpha-D-Galactopylanoside
 pdb|2Z49|B Chain B, Crystal Structure Of Hemolytic Lectin Cel-Iii Complexed
           With Methyl-Alpha-D-Galactopylanoside
          Length = 432

 Score = 25.8 bits (55), Expect = 5.7,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 7/40 (17%)

Query: 9   ASQQGSGKVGKWFINFLSTQK-------WENPLMGWTSTG 41
           +  QG+G VG W  + L  Q+       WE P   W   G
Sbjct: 258 SGDQGTGDVGTWQCDGLPDQRFKWVFDDWEVPTATWNMVG 297


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.132    0.440 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,572,047
Number of Sequences: 62578
Number of extensions: 131240
Number of successful extensions: 249
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 244
Number of HSP's gapped (non-prelim): 7
length of query: 99
length of database: 14,973,337
effective HSP length: 65
effective length of query: 34
effective length of database: 10,905,767
effective search space: 370796078
effective search space used: 370796078
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)