BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043542
(99 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FJW4|NDUS4_ARATH NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Arabidopsis thaliana GN=FRO1 PE=2 SV=1
Length = 154
Score = 149 bits (377), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 68/95 (71%), Positives = 82/95 (86%)
Query: 3 FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARA 62
++ ARTA+Q GSGK+GKW INF+ST KWENPLMGWTSTGDPYANVG++ L FDSE AA++
Sbjct: 57 YSPARTATQSGSGKLGKWKINFVSTLKWENPLMGWTSTGDPYANVGDSALAFDSEEAAKS 116
Query: 63 FAEKHGWEYTVRKFHAPLLKPKSYGDNFKWKGPPK 97
FAE+HGW+Y V+K + PLLK KSY DNFKWKG P+
Sbjct: 117 FAERHGWDYKVKKPNTPLLKVKSYSDNFKWKGNPQ 151
>sp|Q5XIF3|NDUS4_RAT NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Rattus norvegicus GN=Ndufs4 PE=1 SV=1
Length = 175
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 3 FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARA 62
F AR Q G KW + F + ++WENPLMGW ST DP +N+ L F ++ A A
Sbjct: 80 FVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNM---VLTFSAKEDAVA 136
Query: 63 FAEKHGWEYTVRKFHAPLLKPKSYGDNFKW 92
FAEKHGW Y V P K KSYG NF W
Sbjct: 137 FAEKHGWSYDVEGRKVPKPKSKSYGANFSW 166
>sp|Q02375|NDUS4_BOVIN NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Bos taurus GN=NDUFS4 PE=1 SV=1
Length = 175
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 3 FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARA 62
F AR Q G KW + F + ++WENPLMGW ST DP +N+ L F ++ A A
Sbjct: 80 FVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNL---VLTFSTKEDAVA 136
Query: 63 FAEKHGWEYTVRKFHAPLLKPKSYGDNFKW 92
FAEK+GW Y V + P K KSYG NF W
Sbjct: 137 FAEKNGWSYDVEERKVPKPKSKSYGANFSW 166
>sp|Q66XS7|NDUS4_GECJA NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Gecko japonicus GN=NDUFS4 PE=2 SV=1
Length = 175
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Query: 3 FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARA 62
F AR Q G KW + F + ++WENPLMGW+ST DP +N+ L F ++ A A
Sbjct: 80 FVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWSSTADPLSNL---VLTFSTKEDAVA 136
Query: 63 FAEKHGWEYTVRKFHAPLLKPKSYGDNFKW 92
FAEK+GW + V + P K KSYG NF W
Sbjct: 137 FAEKNGWSFDVEERKVPKPKSKSYGANFSW 166
>sp|P0CB96|NDUS4_PONPY NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Pongo pygmaeus GN=NDUFS4 PE=2 SV=1
Length = 175
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 3 FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARA 62
F AR Q G KW + F + ++WENPLMGW ST DP +N+ L F ++ A +
Sbjct: 80 FVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNM---VLTFRTKEDAVS 136
Query: 63 FAEKHGWEYTVRKFHAPLLKPKSYGDNFKW 92
FAEK+GW Y V + P K KSYG NF W
Sbjct: 137 FAEKNGWSYDVEERKVPKPKSKSYGANFSW 166
>sp|P0CB95|NDUS4_PONAB NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Pongo abelii GN=NDUFS4 PE=2 SV=1
Length = 175
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 3 FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARA 62
F AR Q G KW + F + ++WENPLMGW ST DP +N+ L F ++ A +
Sbjct: 80 FVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNM---VLTFRTKEDAVS 136
Query: 63 FAEKHGWEYTVRKFHAPLLKPKSYGDNFKW 92
FAEK+GW Y V + P K KSYG NF W
Sbjct: 137 FAEKNGWSYDVEERKVPKPKSKSYGANFSW 166
>sp|O43181|NDUS4_HUMAN NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Homo sapiens GN=NDUFS4 PE=1 SV=1
Length = 175
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 3 FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARA 62
F AR Q G KW + F + ++WENPLMGW ST DP +N+ L F ++ A +
Sbjct: 80 FVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNM---VLTFSTKEDAVS 136
Query: 63 FAEKHGWEYTVRKFHAPLLKPKSYGDNFKW 92
FAEK+GW Y + + P K KSYG NF W
Sbjct: 137 FAEKNGWSYDIEERKVPKPKSKSYGANFSW 166
>sp|Q0MQH0|NDUS4_GORGO NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS4 PE=2
SV=1
Length = 175
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 3 FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARA 62
F AR Q G KW + F + ++WENPLMGW ST DP +N+ L F ++ A +
Sbjct: 80 FVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNM---VLTFSTKEDAVS 136
Query: 63 FAEKHGWEYTVRKFHAPLLKPKSYGDNFKW 92
FAEK+GW Y + + P K KSYG NF W
Sbjct: 137 FAEKNGWSYDIEERKVPKPKSKSYGANFSW 166
>sp|Q0MQH1|NDUS4_PANTR NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Pan troglodytes GN=NDUFS4 PE=2 SV=1
Length = 175
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 3 FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARA 62
F AR Q G KW + F + ++WENPLMGW ST DP +N+ L ++ A +
Sbjct: 80 FVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNM---VLTXSTKEDAVS 136
Query: 63 FAEKHGWEYTVRKFHAPLLKPKSYGDNFKW 92
FAEK+GW Y + + P K KSYG NF W
Sbjct: 137 FAEKNGWSYDIEERKVPKPKSKSYGANFSW 166
>sp|Q9CXZ1|NDUS4_MOUSE NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Mus musculus GN=Ndufs4 PE=1 SV=3
Length = 175
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 3 FTHARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARA 62
F AR Q G KW + F + ++WENPLMGW ST DP +N+ L F ++ A A
Sbjct: 80 FVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNM---VLTFSAKEDAIA 136
Query: 63 FAEKHGWEYTVRKFHAPLLKPKSYGDNFKW 92
FAEK+GW Y V + P K KSYG NF W
Sbjct: 137 FAEKNGWSYDVEEKKVPKPKSKSYGANFSW 166
>sp|Q8T1V6|NDUS4_DICDI NADH dehydrogenase [ubiquinone] iron-sulfur protein 4,
mitochondrial OS=Dictyostelium discoideum GN=ndufs4 PE=3
SV=2
Length = 190
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 6 ARTASQQGSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARAFAE 65
+R Q G+ + KW I KW + LMGW ++ D + + L F+SE A A+ +
Sbjct: 92 SRNTMQTGTLRTKKWVIELPFNPKWNDRLMGWWASKDT---LNQLNLRFNSETDAVAYCK 148
Query: 66 KHGWEYTVRKFHAPLLKPKSYGDNFKWKG 94
+ G Y + + L K K YG F+++G
Sbjct: 149 EIGLNYNIVEEDVTLRKKKKYGHRFRYRG 177
>sp|P25711|NDUS4_NEUCR NADH-ubiquinone oxidoreductase 21 kDa subunit, mitochondrial
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=nuo-21 PE=1 SV=2
Length = 218
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 29 KWENPLMGWTSTGDPYANVGEAGLCFDSEAAARAFAEKHGWEYTVRKFHAPLLKPKSYGD 88
+WEN LMGW S+GD V L F ++ A FAEK G+EY V++ + PK+Y +
Sbjct: 147 RWENELMGWQSSGD---FVQGTHLTFRTKEEAIQFAEKQGYEYFVQEPNQRHFTPKAYAN 203
Query: 89 NFKW 92
NF +
Sbjct: 204 NFLY 207
>sp|A4SH20|YIDC_PROVI Membrane protein insertase YidC OS=Prosthecochloris vibrioformis
(strain DSM 265) GN=yidC PE=3 SV=1
Length = 580
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 13 GSGKVGKWFINFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARAFAEK---HGW 69
GS K G F N+L++ K E P+ G ++ D ++ L +D A +A EK GW
Sbjct: 278 GSKKAGNEFENYLASLKMEVPVSG--ASLDNSFSLYMGPLDYDIVRAQKAELEKIMDFGW 335
Query: 70 EYTVRKFHAPLLKP 83
++ R F ++ P
Sbjct: 336 DWLTRPFAEYIILP 349
>sp|C5CPD2|ATKC_VARPS Potassium-transporting ATPase C chain OS=Variovorax paradoxus
(strain S110) GN=kdpC PE=3 SV=1
Length = 193
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 22 INFLSTQKWENPLMGWTSTGDPYANVGEAGLCFDSEAAAR 61
+N L + PL GW G+P NV L D+ AAAR
Sbjct: 156 VNALVASHTQAPLWGWL--GEPRVNVLALNLALDASAAAR 193
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,520,475
Number of Sequences: 539616
Number of extensions: 1539980
Number of successful extensions: 2515
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2492
Number of HSP's gapped (non-prelim): 14
length of query: 99
length of database: 191,569,459
effective HSP length: 68
effective length of query: 31
effective length of database: 154,875,571
effective search space: 4801142701
effective search space used: 4801142701
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)