Query 043542
Match_columns 99
No_of_seqs 101 out of 356
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 10:03:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043542.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043542hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lju_A Putative oxidoreductase 100.0 1.2E-54 4E-59 300.9 10.7 92 1-95 15-107 (108)
2 2jya_A AGR_C_3324P, uncharacte 100.0 1.4E-54 4.8E-59 299.7 6.8 92 1-95 7-99 (106)
3 4b0z_A RPN12, 26S proteasome r 88.9 0.19 6.5E-06 36.9 2.1 22 51-72 199-220 (229)
4 3t5v_A Nuclear mRNA export pro 85.2 0.43 1.5E-05 37.1 2.3 22 51-72 233-254 (316)
5 4b4t_T 26S proteasome regulato 84.3 0.37 1.3E-05 36.5 1.6 21 51-71 208-228 (274)
6 2hpu_A NOSL protein; alpha bet 81.8 1 3.6E-05 32.3 3.0 53 17-69 69-132 (175)
7 1ng7_A Poliovirus 3A-N, genome 76.0 1.3 4.6E-05 27.2 1.8 14 58-71 32-45 (60)
8 2yzh_A Probable thiol peroxida 68.6 6.1 0.00021 26.0 3.9 39 50-90 83-123 (171)
9 3bsu_A Ribonuclease H1, RNAse 57.7 5.8 0.0002 23.2 1.9 16 51-66 35-50 (53)
10 1qhk_A RNAse HI, protein (ribo 55.0 6.6 0.00023 22.4 1.8 14 51-64 33-46 (47)
11 2fiu_A Conserved hypothetical 54.2 9.5 0.00032 24.4 2.7 15 51-65 58-72 (99)
12 3jtn_A YPBH, adapter protein M 53.9 8.7 0.0003 24.2 2.4 17 51-67 4-20 (91)
13 3jtp_A Adapter protein MECA 1; 52.7 9.5 0.00032 24.4 2.5 18 51-69 10-27 (98)
14 2hw0_A Replicase; alpha+beta, 51.9 16 0.00056 24.4 3.7 23 56-78 88-111 (115)
15 3lo3_A Uncharacterized conserv 48.8 13 0.00046 23.4 2.7 15 51-65 57-71 (94)
16 4dgh_A Sulfate permease family 48.3 9.2 0.00031 24.5 1.9 15 53-67 111-125 (130)
17 3syx_A Sprouty-related, EVH1 d 48.0 9.8 0.00034 26.3 2.1 45 17-67 66-115 (130)
18 2nz2_A Argininosuccinate synth 47.9 7.1 0.00024 31.1 1.5 33 53-90 154-186 (413)
19 2ebb_A Pterin-4-alpha-carbinol 47.7 12 0.00041 24.3 2.4 31 33-66 14-44 (101)
20 1qc6_A EVH1 domain from ENA/VA 46.4 12 0.00041 25.1 2.3 18 51-68 89-106 (130)
21 1vjq_A Designed protein; struc 43.7 29 0.00097 20.6 3.6 26 51-76 44-69 (79)
22 1usm_A DCOH, hepatocyte nuclea 43.4 15 0.00052 22.7 2.3 31 35-67 1-31 (80)
23 1snn_A DHBP synthase, 3,4-dihy 43.1 15 0.00053 27.5 2.7 20 55-74 194-213 (227)
24 1xod_A Spred1; sprouty, EVH1, 43.1 14 0.00049 24.6 2.3 17 51-67 92-108 (118)
25 1egx_A VAsp, vasodilator-stimu 41.9 15 0.00052 24.3 2.3 17 51-67 90-106 (115)
26 2gjf_A Designed protein; proca 41.8 46 0.0016 19.6 4.3 25 51-75 52-76 (78)
27 1rz4_A Eukaryotic translation 41.6 8 0.00028 28.5 0.9 38 52-89 162-204 (226)
28 1evh_A WH1 domain, protein (ME 41.2 16 0.00055 24.0 2.3 17 51-67 88-104 (112)
29 3hh1_A Tetrapyrrole methylase 41.1 22 0.00076 22.7 2.9 23 53-75 93-115 (117)
30 1mwp_A Amyloid A4 protein; hep 40.8 16 0.00056 24.1 2.2 23 51-73 33-55 (96)
31 4g2e_A Peroxiredoxin; redox pr 40.7 23 0.0008 23.1 3.1 26 51-76 69-94 (157)
32 2kln_A Probable sulphate-trans 40.6 9.7 0.00033 24.4 1.1 16 52-67 109-124 (130)
33 2p6w_A VP54, putative glycosyl 40.6 13 0.00045 27.9 1.9 20 56-75 25-44 (213)
34 3ewt_E Tumor necrosis factor r 40.3 17 0.00057 18.6 1.7 14 56-69 12-25 (25)
35 3jst_A Putative pterin-4-alpha 40.2 22 0.00075 22.7 2.8 31 32-66 16-48 (97)
36 3pxi_a Adapter protein MECA 1; 39.8 13 0.00046 24.4 1.7 18 51-69 23-40 (111)
37 3p3d_A Nucleoporin 53; structu 39.4 14 0.00048 25.6 1.8 21 51-71 66-86 (132)
38 3eyt_A Uncharacterized protein 38.7 25 0.00086 22.0 2.9 24 55-78 78-101 (158)
39 4dgf_A Sulfate transporter sul 38.1 16 0.00056 23.5 1.9 15 53-67 114-128 (135)
40 1ddw_A GLGF-domain protein hom 38.0 19 0.00066 24.1 2.3 17 51-67 87-103 (120)
41 1mwq_A Hypothetical protein HI 36.8 19 0.00064 22.4 2.0 26 51-76 65-97 (101)
42 2a4v_A Peroxiredoxin DOT5; yea 36.7 30 0.001 22.1 3.1 27 50-76 72-98 (159)
43 3drn_A Peroxiredoxin, bacterio 36.3 33 0.0011 22.0 3.2 27 51-77 68-94 (161)
44 2jp2_A Spred-2, sprouty-relate 36.2 26 0.00088 23.7 2.7 17 51-67 101-117 (126)
45 2jpc_A SSRB; DNA binding prote 36.2 12 0.00039 20.7 0.8 19 51-69 40-58 (61)
46 2qbu_A Precorrin-2 methyltrans 35.9 35 0.0012 23.8 3.5 32 37-76 99-130 (232)
47 4fle_A Esterase; structural ge 35.8 9.8 0.00033 24.9 0.5 34 34-79 8-42 (202)
48 1psq_A Probable thiol peroxida 35.3 32 0.0011 22.2 3.0 27 50-76 78-105 (163)
49 3gkn_A Bacterioferritin comigr 35.1 25 0.00086 22.4 2.5 26 51-76 74-99 (163)
50 2v6u_A Pterin-4A-carbinolamine 34.8 23 0.00077 23.0 2.2 33 32-66 19-51 (104)
51 1vl2_A Argininosuccinate synth 34.7 9 0.00031 31.0 0.2 32 54-90 164-195 (421)
52 2w5f_A Endo-1,4-beta-xylanase 34.3 22 0.00076 28.9 2.5 22 51-72 242-263 (540)
53 1xvw_A Hypothetical protein RV 34.1 28 0.00097 22.0 2.6 28 50-77 74-101 (160)
54 3mio_A DHBP synthase, 3,4-dihy 34.0 25 0.00085 26.0 2.5 20 54-73 175-194 (206)
55 1tp9_A Peroxiredoxin, PRX D (t 33.1 39 0.0013 21.9 3.2 28 50-77 75-104 (162)
56 2d73_A Alpha-glucosidase SUSB; 32.7 22 0.00076 30.9 2.4 23 52-74 368-390 (738)
57 4gqc_A Thiol peroxidase, perox 32.5 37 0.0013 22.4 3.1 27 51-77 72-98 (164)
58 1gqe_A Release factor 2, RF2; 32.4 24 0.00081 28.2 2.3 17 61-77 153-169 (365)
59 2e0n_A Precorrin-2 C20-methylt 32.4 36 0.0012 24.4 3.2 32 38-77 102-133 (259)
60 3dhx_A Methionine import ATP-b 32.3 36 0.0012 21.7 2.8 19 57-75 78-96 (106)
61 3llo_A Prestin; STAS domain, c 32.2 10 0.00036 24.5 0.2 16 52-67 126-141 (143)
62 2zib_A Type II antifreeze prot 31.9 26 0.00089 22.2 2.1 38 31-71 8-45 (133)
63 1tif_A IF3-N, translation init 31.6 39 0.0013 21.3 2.8 28 51-78 25-52 (78)
64 2wfc_A Peroxiredoxin 5, PRDX5; 31.5 39 0.0013 22.5 3.1 28 50-77 71-100 (167)
65 3ktm_A Amyloid beta A4 protein 31.1 25 0.00087 25.9 2.1 23 51-73 44-66 (191)
66 1tks_A 3,4-dihydroxy-2-butanon 30.8 29 0.00099 25.6 2.4 19 55-73 176-194 (204)
67 3ndc_A Precorrin-4 C(11)-methy 30.6 41 0.0014 24.5 3.3 32 38-77 82-113 (264)
68 3tbi_A RNA polymerase-associat 30.3 22 0.00077 24.3 1.6 16 57-72 59-74 (115)
69 3d5a_X RF1, peptide chain rele 30.1 27 0.00092 27.8 2.3 17 61-77 132-148 (354)
70 3p7x_A Probable thiol peroxida 30.1 46 0.0016 21.5 3.2 27 51-77 82-109 (166)
71 1zbt_A RF-1, peptide chain rel 30.0 27 0.00092 28.0 2.3 17 61-77 150-166 (371)
72 1k4i_A 3,4-dihydroxy-2-butanon 29.0 34 0.0012 25.8 2.6 21 54-74 193-213 (233)
73 2ihr_1 Peptide chain release f 29.0 26 0.00088 28.0 2.0 17 61-77 141-157 (365)
74 1i2h_A PSD-ZIP45(homer-1C/VESL 28.7 32 0.0011 24.6 2.3 17 51-67 92-108 (168)
75 1rq0_A RF-1, peptide chain rel 28.6 30 0.001 27.4 2.3 17 61-77 113-129 (342)
76 2z6r_A Diphthine synthase; met 28.5 38 0.0013 24.4 2.7 31 38-76 83-113 (265)
77 4e16_A Precorrin-4 C(11)-methy 28.2 47 0.0016 23.9 3.2 33 37-77 82-114 (253)
78 4eo3_A Bacterioferritin comigr 28.2 27 0.00092 26.3 1.9 36 51-87 59-94 (322)
79 1x60_A Sporulation-specific N- 27.9 53 0.0018 19.2 2.9 22 53-74 52-76 (79)
80 2cqy_A Propionyl-COA carboxyla 27.8 58 0.002 19.2 3.1 25 53-77 30-54 (108)
81 4a56_A PULS, pullulanase secre 27.7 28 0.00097 22.7 1.7 13 59-71 38-50 (93)
82 3raz_A Thioredoxin-related pro 27.6 42 0.0014 21.0 2.5 27 50-76 61-87 (151)
83 3keb_A Probable thiol peroxida 27.6 38 0.0013 24.6 2.6 40 50-89 86-126 (224)
84 3a24_A Alpha-galactosidase; gl 27.5 31 0.0011 29.4 2.3 25 52-76 306-330 (641)
85 1t0f_A Transposon TN7 transpos 26.9 46 0.0016 24.7 3.0 22 56-77 148-169 (276)
86 3ixr_A Bacterioferritin comigr 26.7 42 0.0014 22.2 2.5 26 51-76 90-115 (179)
87 2hiq_A Hypothetical protein YD 26.7 27 0.00091 23.7 1.5 29 37-67 48-76 (113)
88 1ta3_B Endo-1,4-beta-xylanase; 26.3 29 0.001 26.0 1.8 26 51-76 59-84 (303)
89 3ced_A Methionine import ATP-b 26.2 51 0.0017 20.7 2.7 24 51-74 67-95 (98)
90 2b3t_B RF-1, peptide chain rel 26.0 25 0.00086 28.0 1.4 17 61-77 136-152 (360)
91 2uwf_A Endoxylanase, alkaline 25.8 24 0.00082 27.2 1.3 26 51-76 62-87 (356)
92 1r85_A Endo-1,4-beta-xylanase; 25.7 31 0.0011 26.9 1.9 26 51-76 72-97 (379)
93 1i1w_A Endo-1,4-beta-xylanase; 25.7 30 0.001 25.8 1.8 26 51-76 60-85 (303)
94 1va0_A Uroporphyrin-III C-meth 25.7 64 0.0022 22.7 3.5 30 39-76 82-111 (239)
95 1je8_A Nitrate/nitrite respons 25.6 30 0.001 20.6 1.5 20 51-70 63-82 (82)
96 1v0l_A Endo-1,4-beta-xylanase 25.6 30 0.001 26.1 1.8 26 51-76 58-83 (313)
97 3sol_A Type II secretion pathw 25.6 33 0.0011 22.5 1.8 14 59-72 38-51 (94)
98 2qrr_A Methionine import ATP-b 25.0 55 0.0019 20.4 2.7 18 57-74 80-97 (101)
99 3ayv_A Putative uncharacterize 24.8 55 0.0019 22.5 2.9 23 51-73 6-28 (254)
100 1s4d_A Uroporphyrin-III C-meth 24.7 52 0.0018 24.1 2.9 31 39-77 99-129 (280)
101 3cui_A EXO-beta-1,4-glucanase; 24.6 32 0.0011 25.6 1.7 25 51-75 57-81 (315)
102 3ro8_A Endo-1,4-beta-xylanase; 24.5 27 0.00091 27.0 1.3 22 51-72 58-79 (341)
103 3ulq_B Transcriptional regulat 24.5 17 0.00058 22.5 0.1 19 51-69 71-89 (90)
104 1ve2_A Uroporphyrin-III C-meth 24.4 71 0.0024 22.4 3.5 31 39-77 85-115 (235)
105 1s7i_A Hypothetical protein PA 24.4 31 0.001 22.9 1.4 17 51-67 89-105 (124)
106 2ek1_A RNA-binding protein 12; 24.4 62 0.0021 18.8 2.8 21 51-71 61-82 (95)
107 1k92_A Argininosuccinate synth 23.9 37 0.0013 27.6 2.1 19 55-73 166-184 (455)
108 3op6_A Uncharacterized protein 23.9 52 0.0018 21.8 2.6 20 56-75 3-22 (152)
109 2b9s_B DNA topoisomerase I-lik 23.8 21 0.00071 22.0 0.4 19 54-72 22-40 (62)
110 1hji_B NUN-protein; bacterioph 23.6 45 0.0016 16.9 1.7 12 57-68 15-26 (26)
111 2dep_A Xylanase B, thermostabl 23.5 35 0.0012 26.2 1.8 25 51-75 59-83 (356)
112 1g57_A DHBP synthase, 3,4-dihy 23.2 51 0.0018 24.4 2.6 20 54-73 182-201 (217)
113 4a8x_A RNA-binding protein wit 23.1 70 0.0024 18.1 2.8 21 50-70 50-71 (88)
114 1wde_A Probable diphthine synt 23.0 63 0.0021 23.8 3.1 32 37-76 88-119 (294)
115 3klo_A Transcriptional regulat 23.0 43 0.0015 22.5 2.0 20 51-70 201-220 (225)
116 1xyz_A 1,4-beta-D-xylan-xylano 22.9 36 0.0012 25.9 1.8 25 51-75 83-107 (347)
117 4dkx_A RAS-related protein RAB 22.8 53 0.0018 22.9 2.5 18 55-72 136-153 (216)
118 4f8x_A Endo-1,4-beta-xylanase; 22.5 35 0.0012 26.3 1.6 23 51-73 61-83 (335)
119 1n82_A Xylanase, intra-cellula 22.4 38 0.0013 25.6 1.8 25 51-75 58-82 (331)
120 3ebr_A Uncharacterized RMLC-li 22.4 46 0.0016 22.8 2.1 18 54-71 134-151 (159)
121 3fz4_A Putative arsenate reduc 22.2 61 0.0021 20.9 2.6 20 57-76 16-35 (120)
122 1w32_A Endo-1,4-beta-xylanase 22.2 41 0.0014 25.8 1.9 23 52-74 58-80 (348)
123 1p4w_A RCSB; solution structur 22.1 35 0.0012 21.5 1.3 19 51-69 76-94 (99)
124 2qsw_A Methionine import ATP-b 22.0 62 0.0021 20.1 2.5 19 56-74 79-97 (100)
125 1nq6_A XYS1; glycoside hydrola 21.9 32 0.0011 25.4 1.3 23 51-73 57-79 (302)
126 3md1_A Nuclear and cytoplasmic 21.9 79 0.0027 17.7 2.8 21 51-71 47-68 (83)
127 1rw1_A Conserved hypothetical 21.6 78 0.0027 19.9 3.0 20 57-76 13-32 (114)
128 3ulh_A THO complex subunit 4; 21.5 75 0.0026 18.9 2.8 20 51-70 74-94 (107)
129 2d1z_A Endo-1,4-beta-D-xylanas 21.4 40 0.0014 26.2 1.8 26 51-76 58-83 (436)
130 2kok_A Arsenate reductase; bru 21.1 79 0.0027 20.1 2.9 21 56-76 17-37 (120)
131 3bs9_A Nucleolysin TIA-1 isofo 21.1 81 0.0028 17.9 2.8 19 51-69 52-71 (87)
132 1fse_A GERE; helix-turn-helix 20.9 42 0.0014 18.7 1.4 19 51-69 53-71 (74)
133 2cpe_A RNA-binding protein EWS 20.8 82 0.0028 19.0 2.9 22 50-71 68-90 (113)
134 2afp_A Protein (SEA raven type 20.8 81 0.0028 19.2 2.9 35 35-72 9-43 (129)
135 1a04_A Nitrate/nitrite respons 20.8 39 0.0013 22.4 1.4 19 51-69 196-214 (215)
136 3niy_A Endo-1,4-beta-xylanase; 20.5 53 0.0018 25.3 2.3 23 51-73 78-100 (341)
137 2k89_A PLA2P, PLAP, phospholip 20.5 53 0.0018 20.9 1.9 20 51-70 32-55 (80)
138 3l78_A Regulatory protein SPX; 20.4 72 0.0025 20.4 2.6 20 57-76 13-32 (120)
139 3g12_A Putative lactoylglutath 20.3 79 0.0027 19.5 2.8 27 51-77 71-97 (128)
140 2pwj_A Mitochondrial peroxired 20.3 85 0.0029 20.7 3.1 27 51-77 84-112 (171)
141 3emz_A Xylanase, endo-1,4-beta 20.3 32 0.0011 26.4 1.0 24 51-74 57-80 (331)
142 3u7b_A Endo-1,4-beta-xylanase; 20.3 32 0.0011 26.3 1.0 23 51-73 59-81 (327)
143 1nu4_A U1A RNA binding domain; 20.3 84 0.0029 18.3 2.8 21 51-71 55-76 (97)
144 3uma_A Hypothetical peroxiredo 20.1 82 0.0028 21.4 3.0 27 51-77 97-125 (184)
145 1ur1_A Endoxylanase; hydrolase 20.1 38 0.0013 26.4 1.4 25 51-75 81-105 (378)
No 1
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=100.00 E-value=1.2e-54 Score=300.93 Aligned_cols=92 Identities=32% Similarity=0.550 Sum_probs=89.5
Q ss_pred CCccCCCCCCCCCCCCCCCcEEEecCC-CCCCCCCcCcCCCCCcccccCCceeecCCHHHHHHHHHHhCCcEEEeecCCC
Q 043542 1 SSFTHARTASQQGSGKVGKWFINFLST-QKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARAFAEKHGWEYTVRKFHAP 79 (99)
Q Consensus 1 rIy~p~k~a~QSG~~~~~~W~lefe~~-~~~~dPLMGWtss~D~~sqv~~~~l~F~ske~Ai~yaek~G~~y~V~~p~~~ 79 (99)
|||+|+|+|||||++++++|+|||++. ++|+|||||||||+||++|| +|+|+|+|+||+|||+|||+|+|++|+.+
T Consensus 15 rIy~Pak~amQSG~~~t~~W~lefe~~~~r~~nPLMGWtsS~D~~~qv---~L~F~skE~AiayAek~G~~y~V~ep~~~ 91 (108)
T 2lju_A 15 RIYKPAKSTMQSGHSKLKAWKLEFEPSCTQYTEPLMNWTGSHDTKQQV---CLSFTTRELAIAYAVAHKIDYTVLQDNPR 91 (108)
T ss_dssp EEECCCCCCSSSSCCSCCCEEEEECCCSSCCCCCCCCCSSSCCCCCCS---CEEESSHHHHHHHHHHTTCEEEEECSSCC
T ss_pred EEeCCCCCccccCCCCCCceEEEEecCCCCccCCCccccCCCCccccc---eEecCCHHHHHHHHHHcCCEEEEecCCcc
Confidence 799999999999999999999999996 69999999999999999999 99999999999999999999999999999
Q ss_pred CCCCccccccCCCCCC
Q 043542 80 LLKPKSYGDNFKWKGP 95 (99)
Q Consensus 80 ~~~~ksYadNF~~~~~ 95 (99)
++++|+|||||+|+.+
T Consensus 92 ~~r~ksYadNF~~~r~ 107 (108)
T 2lju_A 92 TIVPKSYADNFTKPRD 107 (108)
T ss_dssp CCCCCCCCCCCCCCCC
T ss_pred cCCcCchHHHCCccCC
Confidence 9999999999999865
No 2
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=100.00 E-value=1.4e-54 Score=299.73 Aligned_cols=92 Identities=33% Similarity=0.553 Sum_probs=74.7
Q ss_pred CCccCCCCCCCCCCCCCCCcEEEecCC-CCCCCCCcCcCCCCCcccccCCceeecCCHHHHHHHHHHhCCcEEEeecCCC
Q 043542 1 SSFTHARTASQQGSGKVGKWFINFLST-QKWENPLMGWTSTGDPYANVGEAGLCFDSEAAARAFAEKHGWEYTVRKFHAP 79 (99)
Q Consensus 1 rIy~p~k~a~QSG~~~~~~W~lefe~~-~~~~dPLMGWtss~D~~sqv~~~~l~F~ske~Ai~yaek~G~~y~V~~p~~~ 79 (99)
|||+|+|+|||||++++++|+|||++. ++|+|||||||||+||++|| +|+|+|+|+||+|||+|||+|+|++|+.+
T Consensus 7 rIy~Pak~amQSG~~~t~~W~lefe~~~~rw~nPLMGWtsS~D~~~qv---~L~F~skE~AiayAek~G~~y~V~ep~~~ 83 (106)
T 2jya_A 7 KIYRPAKTAMQSGTAKTNVWVLEFDAEVPRKIDPIMGYTSSSDMKQQV---KLTFETQEQAEAYAQRKGIEYRVILPKEA 83 (106)
T ss_dssp EEECCSSCCCTTTTCCSCCEEEEEEEECCSCCCTTTCSCSCCCSEEEE---EEEESSHHHHHHHHHHHTCEEEECCCTTC
T ss_pred EEeCCCCCccccCCCCCCceEEEEecCCCCccCCCcCcCCCCCccccc---eEecCCHHHHHHHHHHcCCEEEEeCCCcC
Confidence 799999999999999999999999996 79999999999999999998 99999999999999999999999999999
Q ss_pred CCCCccccccCCCCCC
Q 043542 80 LLKPKSYGDNFKWKGP 95 (99)
Q Consensus 80 ~~~~ksYadNF~~~~~ 95 (99)
++++|+|||||+|+.+
T Consensus 84 ~~r~ksYadNF~~~r~ 99 (106)
T 2jya_A 84 TRKVVSYTDNFRFNRT 99 (106)
T ss_dssp ----------------
T ss_pred cCCcCchHHhCCcCCC
Confidence 9999999999999865
No 3
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=88.94 E-value=0.19 Score=36.91 Aligned_cols=22 Identities=23% Similarity=0.564 Sum_probs=20.0
Q ss_pred eeecCCHHHHHHHHHHhCCcEE
Q 043542 51 GLCFDSEAAARAFAEKHGWEYT 72 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~~y~ 72 (99)
.|.|+|.++++.||+++||...
T Consensus 199 ~L~f~s~~e~~~f~~~~gw~i~ 220 (229)
T 4b0z_A 199 LLYLENTKETEKLAEERGWDIR 220 (229)
T ss_dssp HTTCSSHHHHHHHHHHHTCEEE
T ss_pred HhCCCCHHHHHHHHHHcCCEEe
Confidence 5889999999999999999764
No 4
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=85.17 E-value=0.43 Score=37.09 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=20.7
Q ss_pred eeecCCHHHHHHHHHHhCCcEE
Q 043542 51 GLCFDSEAAARAFAEKHGWEYT 72 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~~y~ 72 (99)
.|.|+|.|+|++||+.+||.+.
T Consensus 233 ~L~Fds~ee~~~F~~~~gl~~~ 254 (316)
T 3t5v_A 233 MLLFNNRQEIIEFCNYYSIEII 254 (316)
T ss_dssp HTTCSSHHHHHHHHHHTTCCEE
T ss_pred HhCCCCHHHHHHHHHHCCCeEe
Confidence 4889999999999999999996
No 5
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.35 E-value=0.37 Score=36.52 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=19.4
Q ss_pred eeecCCHHHHHHHHHHhCCcE
Q 043542 51 GLCFDSEAAARAFAEKHGWEY 71 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~~y 71 (99)
.|.|+|.+++++||+++||..
T Consensus 208 ~L~F~s~~e~~~F~~~~gW~~ 228 (274)
T 4b4t_T 208 LLFFNNEKETEKFALERNWPI 228 (274)
T ss_dssp HHTCCSHHHHHHHHHHTTCCC
T ss_pred HhCCCCHHHHHHHHHHcCCEE
Confidence 588999999999999999975
No 6
>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR {Achromobacter cycloclastes} SCOP: d.357.1.1 PDB: 2hq3_A
Probab=81.76 E-value=1 Score=32.28 Aligned_cols=53 Identities=21% Similarity=0.386 Sum_probs=33.5
Q ss_pred CCCcEEEecC-CCCCCCCCcC-cCC--------CCCcccccC-CceeecCCHHHHHHHHHHhCC
Q 043542 17 VGKWFINFLS-TQKWENPLMG-WTS--------TGDPYANVG-EAGLCFDSEAAARAFAEKHGW 69 (99)
Q Consensus 17 ~~~W~lefe~-~~~~~dPLMG-Wts--------s~D~~sqv~-~~~l~F~ske~Ai~yaek~G~ 69 (99)
...||-+|.. ...|+.|--+ |.. .+|-..-++ ..-+-|.++++|.+|++++|=
T Consensus 69 ~aiyV~D~~t~~~~w~~p~~~~wIdA~~A~YVvgS~~~gpMG~~~l~pFa~k~dAe~Fa~~~GG 132 (175)
T 2hpu_A 69 LVIYVNDMGAAGATWDQPGDGNWIAADKAFYVVGSARRGGMGAPEAVPFSSRDEAAAFVLAEGG 132 (175)
T ss_dssp EEEEEEESCTTSSCTTCSCCCEEECGGGSEEEEESSSSCSSSCCCEEEESCHHHHHHHHHHTEE
T ss_pred eEEEEEcCcccccccccCCCCceEECCeeEEEeCCCCCCCCCCCcccCcCCHHHHHHHHHHcCC
Confidence 3568999987 3556555221 421 123222222 236899999999999999994
No 7
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=75.99 E-value=1.3 Score=27.21 Aligned_cols=14 Identities=36% Similarity=0.817 Sum_probs=12.5
Q ss_pred HHHHHHHHHhCCcE
Q 043542 58 AAARAFAEKHGWEY 71 (99)
Q Consensus 58 e~Ai~yaek~G~~y 71 (99)
++-+.||+++||-.
T Consensus 32 ~eV~~YC~~kGwIi 45 (60)
T 1ng7_A 32 QEVRDYCEKKGWIV 45 (60)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHCCcee
Confidence 77899999999975
No 8
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}
Probab=68.63 E-value=6.1 Score=25.98 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=29.6
Q ss_pred ceeecCCHHHHHHHHHHhCC-cEEEeec-CCCCCCCccccccC
Q 043542 50 AGLCFDSEAAARAFAEKHGW-EYTVRKF-HAPLLKPKSYGDNF 90 (99)
Q Consensus 50 ~~l~F~ske~Ai~yaek~G~-~y~V~~p-~~~~~~~ksYadNF 90 (99)
.-+..++.++..+|++++|+ .|.+... ..... +.|+-..
T Consensus 83 v~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~--~~~gv~~ 123 (171)
T 2yzh_A 83 TVVSMDLPFAQKRFCESFNIQNVTVASDFRYRDM--EKYGVLI 123 (171)
T ss_dssp EEEESSCHHHHHHHHHHTTCCSSEEEECTTTCGG--GGGTCBB
T ss_pred EEEeCCCHHHHHHHHHHcCCCCeEEeecCccCcH--HHhCCEe
Confidence 36778999999999999999 8988765 43334 7777543
No 9
>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens}
Probab=57.73 E-value=5.8 Score=23.15 Aligned_cols=16 Identities=38% Similarity=0.320 Sum_probs=13.6
Q ss_pred eeecCCHHHHHHHHHH
Q 043542 51 GLCFDSEAAARAFAEK 66 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek 66 (99)
.-+|.|+++|.+|.+.
T Consensus 35 yK~F~t~~eA~~~l~~ 50 (53)
T 3bsu_A 35 FKKFATEDEAWAFVRK 50 (53)
T ss_dssp EEEESSHHHHHHHHHC
T ss_pred cCCCCCHHHHHHHHHh
Confidence 4579999999999864
No 10
>1qhk_A RNAse HI, protein (ribonuclease HI); ribonuclease HI N-terminal domain, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.100.1.2
Probab=54.97 E-value=6.6 Score=22.36 Aligned_cols=14 Identities=29% Similarity=0.278 Sum_probs=12.1
Q ss_pred eeecCCHHHHHHHH
Q 043542 51 GLCFDSEAAARAFA 64 (99)
Q Consensus 51 ~l~F~ske~Ai~ya 64 (99)
.-+|.|+++|.+|.
T Consensus 33 yK~F~t~~eA~~~l 46 (47)
T 1qhk_A 33 YKKFNSYEQAKSFL 46 (47)
T ss_dssp CEEESCHHHHHHHH
T ss_pred cCCCCCHHHHHHHh
Confidence 45799999999985
No 11
>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta barrels, structural genomics, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.58.4.16
Probab=54.15 E-value=9.5 Score=24.37 Aligned_cols=15 Identities=20% Similarity=-0.004 Sum_probs=13.5
Q ss_pred eeecCCHHHHHHHHH
Q 043542 51 GLCFDSEAAARAFAE 65 (99)
Q Consensus 51 ~l~F~ske~Ai~yae 65 (99)
-+.|+|+|+|.++..
T Consensus 58 iieFpS~~aa~~~~~ 72 (99)
T 2fiu_A 58 VIEFPSVQHAIDCYN 72 (99)
T ss_dssp EEEESSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHc
Confidence 789999999999875
No 12
>3jtn_A YPBH, adapter protein MECA 2; adaptor protein, competence, sporulation, protein binding; 2.09A {Bacillus subtilis} PDB: 3jto_A
Probab=53.86 E-value=8.7 Score=24.18 Aligned_cols=17 Identities=18% Similarity=0.002 Sum_probs=15.7
Q ss_pred eeecCCHHHHHHHHHHh
Q 043542 51 GLCFDSEAAARAFAEKH 67 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~ 67 (99)
.++|++.|+.|++|+..
T Consensus 4 i~~F~~~edvI~~a~~l 20 (91)
T 3jtn_A 4 IYQFHSFEDIIQLSESL 20 (91)
T ss_dssp EEEESSHHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHc
Confidence 68999999999999975
No 13
>3jtp_A Adapter protein MECA 1; MECA;adaptor protein;degradation TAG, competence, sporulation, protein binding; 2.17A {Bacillus subtilis} PDB: 2y1r_I* 3pxg_a
Probab=52.69 E-value=9.5 Score=24.43 Aligned_cols=18 Identities=11% Similarity=0.019 Sum_probs=16.0
Q ss_pred eeecCCHHHHHHHHHHhCC
Q 043542 51 GLCFDSEAAARAFAEKHGW 69 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~ 69 (99)
.+.|++.|+.|++|+ .+.
T Consensus 10 i~~F~d~edvI~~a~-~~~ 27 (98)
T 3jtp_A 10 VLRFGDFEDVISLSK-LNV 27 (98)
T ss_dssp EEEESSHHHHHHHHH-TTC
T ss_pred EEEcCCHHHHHHHhC-CCC
Confidence 689999999999999 654
No 14
>2hw0_A Replicase; alpha+beta, hydrolase, replication; NMR {Porcine circovirus 2}
Probab=51.90 E-value=16 Score=24.38 Aligned_cols=23 Identities=9% Similarity=0.176 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHhCCc-EEEeecCC
Q 043542 56 SEAAARAFAEKHGWE-YTVRKFHA 78 (99)
Q Consensus 56 ske~Ai~yaek~G~~-y~V~~p~~ 78 (99)
|.++|++||.|-|=- ++.-+|..
T Consensus 88 s~~q~~~Yc~Keg~~i~e~G~~~~ 111 (115)
T 2hw0_A 88 TDQQNKEYCSKEGNLLMECGAPRS 111 (115)
T ss_dssp CHHHHHHHHHTTSCEEEEEECCCC
T ss_pred CHHHHHHHhccCCcEEEEeccccc
Confidence 779999999999933 35555553
No 15
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=48.85 E-value=13 Score=23.41 Aligned_cols=15 Identities=27% Similarity=0.162 Sum_probs=13.6
Q ss_pred eeecCCHHHHHHHHH
Q 043542 51 GLCFDSEAAARAFAE 65 (99)
Q Consensus 51 ~l~F~ske~Ai~yae 65 (99)
-+.|+|.|+|.++..
T Consensus 57 iieFps~~aa~a~y~ 71 (94)
T 3lo3_A 57 ILEFPSREDAYNWYH 71 (94)
T ss_dssp EEEESSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHC
Confidence 899999999999864
No 16
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=48.30 E-value=9.2 Score=24.50 Aligned_cols=15 Identities=13% Similarity=-0.017 Sum_probs=13.4
Q ss_pred ecCCHHHHHHHHHHh
Q 043542 53 CFDSEAAARAFAEKH 67 (99)
Q Consensus 53 ~F~ske~Ai~yaek~ 67 (99)
.|+|.++||+.|+.+
T Consensus 111 i~~s~~~Al~~~~~~ 125 (130)
T 4dgh_A 111 VYPVFEGALSAALTE 125 (130)
T ss_dssp EESSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHH
Confidence 699999999999864
No 17
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens}
Probab=48.02 E-value=9.8 Score=26.33 Aligned_cols=45 Identities=27% Similarity=0.316 Sum_probs=27.9
Q ss_pred CCCcEEEecCCC-----CCCCCCcCcCCCCCcccccCCceeecCCHHHHHHHHHHh
Q 043542 17 VGKWFINFLSTQ-----KWENPLMGWTSTGDPYANVGEAGLCFDSEAAARAFAEKH 67 (99)
Q Consensus 17 ~~~W~lefe~~~-----~~~dPLMGWtss~D~~sqv~~~~l~F~ske~Ai~yaek~ 67 (99)
.+.++|++.-.. +-...+--|.-+ | ++- -|.|.|+|+|-+|++..
T Consensus 66 d~~vvinc~I~~~l~Ynkatp~FHqWrd~-~---~~y--GL~F~S~~dA~~F~~~~ 115 (130)
T 3syx_A 66 DKMVVLECMLKKDLIYNKVTPTFHHWKID-D---KKF--GLTFQSPADARAFDRGI 115 (130)
T ss_dssp TCCEEEEEECCTTCEEEEEETTEEEEEET-T---EEE--EEEESSHHHHHHHHHHH
T ss_pred CCeEEEeeeecCCceEEeccccccccccc-C---eEe--ecccCCHHHHHHHHHHH
Confidence 456777765321 111334456543 2 442 79999999999999853
No 18
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=47.91 E-value=7.1 Score=31.14 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=22.7
Q ss_pred ecCCHHHHHHHHHHhCCcEEEeecCCCCCCCccccccC
Q 043542 53 CFDSEAAARAFAEKHGWEYTVRKFHAPLLKPKSYGDNF 90 (99)
Q Consensus 53 ~F~ske~Ai~yaek~G~~y~V~~p~~~~~~~ksYadNF 90 (99)
.|.+|++-++||+++|+++.+. |. .+-|+..||
T Consensus 154 ~~~sK~EI~~yA~~~Gip~~~~-~~----~~~S~d~n~ 186 (413)
T 2nz2_A 154 RFKGRNDLMEYAKQHGIPIPVT-PK----NPWSMDENL 186 (413)
T ss_dssp TCC-CHHHHHHHHHTTCCCCSS-CC----CSSCEEECS
T ss_pred cCCCHHHHHHHHHHcCCCeecC-CC----CCCCCChhh
Confidence 4669999999999999998632 21 234555665
No 19
>2ebb_A Pterin-4-alpha-carbinolamine dehydratase; coenzyme biosyntheses, GK1984, structural genomics, NPPSFA; 1.60A {Geobacillus kaustophilus}
Probab=47.67 E-value=12 Score=24.26 Aligned_cols=31 Identities=13% Similarity=0.234 Sum_probs=23.7
Q ss_pred CCcCcCCCCCcccccCCceeecCCHHHHHHHHHH
Q 043542 33 PLMGWTSTGDPYANVGEAGLCFDSEAAARAFAEK 66 (99)
Q Consensus 33 PLMGWtss~D~~sqv~~~~l~F~ske~Ai~yaek 66 (99)
.|-||+-.++. .+. ....|++-.+|++|..+
T Consensus 14 ~l~gW~~~~~~--~i~-r~f~F~~f~~a~~F~~~ 44 (101)
T 2ebb_A 14 KADGWKLADER--WIV-KKYRFQDYLQGIEFVRR 44 (101)
T ss_dssp TSTTCEEETTT--EEE-EEEECSSHHHHHHHHHH
T ss_pred cCCCCeECCCC--CEE-EEEEeCCHHHHHHHHHH
Confidence 57799888877 232 27899999999998655
No 20
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=46.43 E-value=12 Score=25.13 Aligned_cols=18 Identities=33% Similarity=0.456 Sum_probs=16.0
Q ss_pred eeecCCHHHHHHHHHHhC
Q 043542 51 GLCFDSEAAARAFAEKHG 68 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G 68 (99)
-|.|.|.|||-+|.++.-
T Consensus 89 GL~F~se~eA~~F~~~~~ 106 (130)
T 1qc6_A 89 GLNFASKEEATTFSNAML 106 (130)
T ss_dssp EEEESCHHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHHHH
Confidence 899999999999988753
No 21
>1vjq_A Designed protein; structural genomics, engineered protein, PSI, protein struct initiative, structural genomics of pathogenic protozoa CONS SGPP; 2.10A {} SCOP: k.43.1.1
Probab=43.66 E-value=29 Score=20.60 Aligned_cols=26 Identities=15% Similarity=-0.055 Sum_probs=23.5
Q ss_pred eeecCCHHHHHHHHHHhCCcEEEeec
Q 043542 51 GLCFDSEAAARAFAEKHGWEYTVRKF 76 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~~y~V~~p 76 (99)
.+.....++-.++-+++|+.|+|.-.
T Consensus 44 ~V~p~~~~~f~~~L~~~~i~~~v~i~ 69 (79)
T 1vjq_A 44 LIPSDMVEWFLEMLKAKGIPFTVYVE 69 (79)
T ss_dssp EECGGGHHHHHHHHHHTTCCEEEEEE
T ss_pred EECHHHHHHHHHHHHHCCCcEEEEeh
Confidence 78899999999999999999998754
No 22
>1usm_A DCOH, hepatocyte nuclear factor 1-alpha; transcriptional stimulator, dimerization cofactor, dehydratase, 4A-carbinolamine dehydratase; 1.2A {Thermus thermophilus} SCOP: d.74.1.1 PDB: 1uso_A
Probab=43.41 E-value=15 Score=22.65 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=20.1
Q ss_pred cCcCCCCCcccccCCceeecCCHHHHHHHHHHh
Q 043542 35 MGWTSTGDPYANVGEAGLCFDSEAAARAFAEKH 67 (99)
Q Consensus 35 MGWtss~D~~sqv~~~~l~F~ske~Ai~yaek~ 67 (99)
+||+-.+++. .|. ....|++-.+|++|..+-
T Consensus 1 ~gW~~~~~~~-~i~-r~f~F~~f~~a~~F~~~V 31 (80)
T 1usm_A 1 MDWEERENLK-RLV-KTFAFPNFREALDFANRV 31 (80)
T ss_dssp CCCEEC---C-CEE-EEEECSSHHHHHHHHHHH
T ss_pred CCCeEeCCcc-EEE-EEEEeCCHHHHHHHHHHH
Confidence 5888777742 232 378999999999986553
No 23
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=43.13 E-value=15 Score=27.53 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHHhCCcEEEe
Q 043542 55 DSEAAARAFAEKHGWEYTVR 74 (99)
Q Consensus 55 ~ske~Ai~yaek~G~~y~V~ 74 (99)
..++++++||++||+.+.-.
T Consensus 194 ar~~~l~~fA~~h~l~~iti 213 (227)
T 1snn_A 194 MSKNETKRYAEKHNLIYLSG 213 (227)
T ss_dssp CCHHHHHHHHHHHTCCEEEH
T ss_pred CCHHHHHHHHHHcCCcEEEH
Confidence 57899999999999998644
No 24
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Probab=43.09 E-value=14 Score=24.61 Aligned_cols=17 Identities=53% Similarity=0.688 Sum_probs=15.5
Q ss_pred eeecCCHHHHHHHHHHh
Q 043542 51 GLCFDSEAAARAFAEKH 67 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~ 67 (99)
-|.|.|.+||-+|+++.
T Consensus 92 GL~F~se~eA~~F~~~v 108 (118)
T 1xod_A 92 GLTFQSPADARAFDRGI 108 (118)
T ss_dssp EEEESSHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHHH
Confidence 79999999999999864
No 25
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=41.95 E-value=15 Score=24.30 Aligned_cols=17 Identities=41% Similarity=0.542 Sum_probs=15.4
Q ss_pred eeecCCHHHHHHHHHHh
Q 043542 51 GLCFDSEAAARAFAEKH 67 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~ 67 (99)
-|.|.|.+||-+|++..
T Consensus 90 GLnF~se~eA~~F~~~v 106 (115)
T 1egx_A 90 GLNFGSKEDAAQFAAGM 106 (115)
T ss_dssp EEEESSHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHHH
Confidence 79999999999998863
No 26
>2gjf_A Designed protein; procarboxypeptidase, de novo protein; NMR {}
Probab=41.81 E-value=46 Score=19.63 Aligned_cols=25 Identities=16% Similarity=-0.005 Sum_probs=23.0
Q ss_pred eeecCCHHHHHHHHHHhCCcEEEee
Q 043542 51 GLCFDSEAAARAFAEKHGWEYTVRK 75 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~~y~V~~ 75 (99)
.+.....++-.++-+++|+.|+|.-
T Consensus 52 ~V~p~~~~~f~~~L~~~~I~y~Vli 76 (78)
T 2gjf_A 52 LIPSDMVEWFLEMLKAKGIPFTVYV 76 (78)
T ss_dssp EECTTSHHHHHHHHHHHTCCEEEEE
T ss_pred EECHHHHHHHHHHHHHCCCcEEEEe
Confidence 7889999999999999999999864
No 27
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=41.62 E-value=8 Score=28.46 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=24.6
Q ss_pred eecCCHHHHHHHHHHhCCcEE-----EeecCCCCCCCcccccc
Q 043542 52 LCFDSEAAARAFAEKHGWEYT-----VRKFHAPLLKPKSYGDN 89 (99)
Q Consensus 52 l~F~ske~Ai~yaek~G~~y~-----V~~p~~~~~~~ksYadN 89 (99)
|-|.|-++...||+++||..+ +...+....++|...++
T Consensus 162 Lg~~s~~el~~fi~~~GW~vd~~g~I~~~n~e~~~k~~~~~E~ 204 (226)
T 1rz4_A 162 LGDLSDSQLKVWMSKYGWSADESGQIFICSQEESIKPKNIVEK 204 (226)
T ss_dssp TTSCCHHHHHHHHHHHTCEECC--CEECCCHHHHTSCCCSSCC
T ss_pred HcCCCHHHHHHHHHHCCCEECCCccEEeCCCcccccceeeeec
Confidence 346789999999999999873 11112223455555554
No 28
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=41.16 E-value=16 Score=24.04 Aligned_cols=17 Identities=41% Similarity=0.583 Sum_probs=15.4
Q ss_pred eeecCCHHHHHHHHHHh
Q 043542 51 GLCFDSEAAARAFAEKH 67 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~ 67 (99)
-|.|.|.+||-+|++..
T Consensus 88 GLnF~se~eA~~F~~~v 104 (112)
T 1evh_A 88 GLNFGSKEDANVFASAM 104 (112)
T ss_dssp EEEESSHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHHH
Confidence 89999999999998763
No 29
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=41.13 E-value=22 Score=22.71 Aligned_cols=23 Identities=13% Similarity=-0.029 Sum_probs=19.5
Q ss_pred ecCCHHHHHHHHHHhCCcEEEee
Q 043542 53 CFDSEAAARAFAEKHGWEYTVRK 75 (99)
Q Consensus 53 ~F~ske~Ai~yaek~G~~y~V~~ 75 (99)
-|++-.+-++.|++.|++++|..
T Consensus 93 i~~~~~~l~~~~~~~gi~v~viP 115 (117)
T 3hh1_A 93 ISDPGYTMASAAHAAGLPVVPVP 115 (117)
T ss_dssp GGSTTHHHHHHHHHTTCCEEEEC
T ss_pred EeccHHHHHHHHHHCCCcEEEeC
Confidence 37888888999999999998863
No 30
>1mwp_A Amyloid A4 protein; heparin binding, sugar binding protein; 1.80A {Homo sapiens} SCOP: d.170.2.1
Probab=40.75 E-value=16 Score=24.12 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=18.9
Q ss_pred eeecCCHHHHHHHHHHhCCcEEE
Q 043542 51 GLCFDSEAAARAFAEKHGWEYTV 73 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~~y~V 73 (99)
.-.+.++++.++||++.--+.+|
T Consensus 33 ~~C~~~k~eIL~YCrkvYP~l~I 55 (96)
T 1mwp_A 33 KTCIDTKEGILQYCQEVYPELQI 55 (96)
T ss_dssp CBCCCSHHHHHHHHHHHSTTSCE
T ss_pred ccccCChHHHHHHHHHHCCCCcc
Confidence 45888999999999998766554
No 31
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=40.69 E-value=23 Score=23.06 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=22.8
Q ss_pred eeecCCHHHHHHHHHHhCCcEEEeec
Q 043542 51 GLCFDSEAAARAFAEKHGWEYTVRKF 76 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~~y~V~~p 76 (99)
.++.++.++..+|++++|++|.+...
T Consensus 69 ~vs~d~~~~~~~~~~~~~~~~p~l~D 94 (157)
T 4g2e_A 69 GISVDPPFSNKAFKEHNKLNFTILSD 94 (157)
T ss_dssp EEESSCHHHHHHHHHHTTCCSEEEEC
T ss_pred eecccchhHHHHHHHHcCCcEEEEEc
Confidence 56789999999999999999987754
No 32
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=40.65 E-value=9.7 Score=24.40 Aligned_cols=16 Identities=13% Similarity=0.000 Sum_probs=14.0
Q ss_pred eecCCHHHHHHHHHHh
Q 043542 52 LCFDSEAAARAFAEKH 67 (99)
Q Consensus 52 l~F~ske~Ai~yaek~ 67 (99)
-.|+|.++|++.|++.
T Consensus 109 ~i~~t~~~Al~~~~~~ 124 (130)
T 2kln_A 109 HIFMTLPTAVQAFRRR 124 (130)
T ss_dssp EEESCHHHHHHHHTTC
T ss_pred eeECCHHHHHHHHHhh
Confidence 3699999999999875
No 33
>2p6w_A VP54, putative glycosyltransferase (mannosyltransferase in glycosylating the PBCV-1 major...; HET: FLC; 1.60A {Paramecium bursaria chlorella virus 1} PDB: 2p72_A* 2p73_A*
Probab=40.61 E-value=13 Score=27.85 Aligned_cols=20 Identities=10% Similarity=0.451 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHhCCcEEEee
Q 043542 56 SEAAARAFAEKHGWEYTVRK 75 (99)
Q Consensus 56 ske~Ai~yaek~G~~y~V~~ 75 (99)
|.+-=++||++||++..+..
T Consensus 25 siKNK~DYArrHGYelfy~d 44 (213)
T 2p6w_A 25 TKELVEEYCSIHGYNFYYEE 44 (213)
T ss_dssp HHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHHHHcCCeEEEee
Confidence 45556789999999999863
No 34
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=40.34 E-value=17 Score=18.58 Aligned_cols=14 Identities=21% Similarity=0.449 Sum_probs=11.6
Q ss_pred CHHHHHHHHHHhCC.
Q 043542 56 SEAAARAFAEKHGW. 69 (99)
Q Consensus 56 ske~Ai~yaek~G~. 69 (99)
+..+...|+++||+
T Consensus 12 ~~~~Vk~fvR~~gi. 25 (25)
T 3ewt_E 12 TLSQVKGFVRKNGVx 26 (26)
T ss_pred hHHHHHHHHHHcCC.
Confidence 45788999999985
No 35
>3jst_A Putative pterin-4-alpha-carbinolamine dehydratase; lyase, structural genomics, seattle structural genomics CENT infectious disease, ssgcid; 2.10A {Brucella melitensis} SCOP: d.74.1.0
Probab=40.23 E-value=22 Score=22.75 Aligned_cols=31 Identities=19% Similarity=0.389 Sum_probs=22.9
Q ss_pred CCCcCcCCCCC--cccccCCceeecCCHHHHHHHHHH
Q 043542 32 NPLMGWTSTGD--PYANVGEAGLCFDSEAAARAFAEK 66 (99)
Q Consensus 32 dPLMGWtss~D--~~sqv~~~~l~F~ske~Ai~yaek 66 (99)
..|-||+-..+ -+.. ..+|++-.+|++|..+
T Consensus 16 ~~l~gW~~~~~~~~l~r----~f~f~~f~~a~~f~~~ 48 (97)
T 3jst_A 16 RALDGWQKVDGREAITR----SFKFKDFSTAFGFMAQ 48 (97)
T ss_dssp HTSTTCEECTTSSCEEE----EEECSSHHHHHHHHHH
T ss_pred hcCCCCeEeCCCCeEEE----EEEeCCHHHHHHHHHH
Confidence 35789987744 3433 7899999999998655
No 36
>3pxi_a Adapter protein MECA 1; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=39.77 E-value=13 Score=24.38 Aligned_cols=18 Identities=11% Similarity=0.019 Sum_probs=16.0
Q ss_pred eeecCCHHHHHHHHHHhCC
Q 043542 51 GLCFDSEAAARAFAEKHGW 69 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~ 69 (99)
.+.|++.|+.|++|+ .+.
T Consensus 23 i~~F~dfEdvI~~A~-~~~ 40 (111)
T 3pxi_a 23 VLRFGDFEDVISLSK-LNV 40 (111)
T ss_dssp EEEESSTHHHHHHHT-SCC
T ss_pred EEEcCCHHHHHHHHc-CCC
Confidence 799999999999999 544
No 37
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=39.39 E-value=14 Score=25.65 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=19.0
Q ss_pred eeecCCHHHHHHHHHHhCCcE
Q 043542 51 GLCFDSEAAARAFAEKHGWEY 71 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~~y 71 (99)
+|+|+|+.+|..-+.++|--+
T Consensus 66 kItYds~~~A~rAL~~NG~ii 86 (132)
T 3p3d_A 66 KITYDNPASAVDALLENGAVF 86 (132)
T ss_dssp EEEBSSHHHHHHHHTTTTCEE
T ss_pred EEEcCCHHHHHHHHHhCCeEe
Confidence 899999999999999999543
No 38
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=38.73 E-value=25 Score=22.04 Aligned_cols=24 Identities=13% Similarity=0.123 Sum_probs=20.1
Q ss_pred CCHHHHHHHHHHhCCcEEEeecCC
Q 043542 55 DSEAAARAFAEKHGWEYTVRKFHA 78 (99)
Q Consensus 55 ~ske~Ai~yaek~G~~y~V~~p~~ 78 (99)
++.++..+|++++|+.|.+.....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~d~~ 101 (158)
T 3eyt_A 78 MTPISLKAFLHEYRIKFPVGVDQP 101 (158)
T ss_dssp SCHHHHHHHHHHTTCCSCEEEECC
T ss_pred CCHHHHHHHHHHcCCCceEEEcCc
Confidence 599999999999999988765443
No 39
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=38.10 E-value=16 Score=23.53 Aligned_cols=15 Identities=33% Similarity=0.344 Sum_probs=13.3
Q ss_pred ecCCHHHHHHHHHHh
Q 043542 53 CFDSEAAARAFAEKH 67 (99)
Q Consensus 53 ~F~ske~Ai~yaek~ 67 (99)
.|+|.++||+.|+.+
T Consensus 114 i~~t~~~Al~~~~~~ 128 (135)
T 4dgf_A 114 VFDHIDKALAYAKLL 128 (135)
T ss_dssp BCSSHHHHHHHHHHH
T ss_pred eeCCHHHHHHHHHHH
Confidence 699999999999864
No 40
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=37.98 E-value=19 Score=24.11 Aligned_cols=17 Identities=53% Similarity=0.679 Sum_probs=15.2
Q ss_pred eeecCCHHHHHHHHHHh
Q 043542 51 GLCFDSEAAARAFAEKH 67 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~ 67 (99)
-|.|.|.++|-+|++..
T Consensus 87 GLnF~s~~eA~~F~~~~ 103 (120)
T 1ddw_A 87 GLGFSSEHHLSKFAEKF 103 (120)
T ss_dssp EEECSSHHHHHHHHHHH
T ss_pred EeccCCHHHHHHHHHHH
Confidence 79999999999998753
No 41
>1mwq_A Hypothetical protein HI0828; YCII_HAEIN, structural genomic structure 2 function project, S2F, unknown function; HET: MSE 1PE; 0.99A {Haemophilus influenzae} SCOP: d.58.4.7
Probab=36.79 E-value=19 Score=22.37 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=20.4
Q ss_pred eeecCCHHHHHHHHHH-----hCC--cEEEeec
Q 043542 51 GLCFDSEAAARAFAEK-----HGW--EYTVRKF 76 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek-----~G~--~y~V~~p 76 (99)
-+.++|+|+|+++|++ +|+ .|+|.+-
T Consensus 65 i~~a~s~eea~~~~~~dP~~~~G~~~~~eVrp~ 97 (101)
T 1mwq_A 65 IAQFENLQAAKDWAAQDPYVEAGVYADVIVKPF 97 (101)
T ss_dssp EEECSSHHHHHHHHHTCHHHHTTCEEEEEEEEE
T ss_pred EEEeCCHHHHHHHHHhCChhhcCCcceEEEEEe
Confidence 5789999999999975 465 5777654
No 42
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=36.72 E-value=30 Score=22.11 Aligned_cols=27 Identities=26% Similarity=0.349 Sum_probs=23.6
Q ss_pred ceeecCCHHHHHHHHHHhCCcEEEeec
Q 043542 50 AGLCFDSEAAARAFAEKHGWEYTVRKF 76 (99)
Q Consensus 50 ~~l~F~ske~Ai~yaek~G~~y~V~~p 76 (99)
.-+..++.++.-+|++++|+.|.+...
T Consensus 72 v~is~d~~~~~~~~~~~~~~~~~~l~D 98 (159)
T 2a4v_A 72 FGLSADSVTSQKKFQSKQNLPYHLLSD 98 (159)
T ss_dssp EEEESCCHHHHHHHHHHHTCSSEEEEC
T ss_pred EEEeCCCHHHHHHHHHHhCCCceEEEC
Confidence 367889999999999999999988765
No 43
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=36.28 E-value=33 Score=22.05 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=23.9
Q ss_pred eeecCCHHHHHHHHHHhCCcEEEeecC
Q 043542 51 GLCFDSEAAARAFAEKHGWEYTVRKFH 77 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~~y~V~~p~ 77 (99)
.+..++.++..+|++++|+.|.+....
T Consensus 68 ~vs~d~~~~~~~~~~~~~~~~~~~~d~ 94 (161)
T 3drn_A 68 GVSSDDINSHKRFKEKYKLPFILVSDP 94 (161)
T ss_dssp EEESCCHHHHHHHHHHTTCCSEEEECT
T ss_pred EEeCCCHHHHHHHHHHhCCCceEEECC
Confidence 678899999999999999999987753
No 44
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=36.22 E-value=26 Score=23.70 Aligned_cols=17 Identities=53% Similarity=0.692 Sum_probs=15.5
Q ss_pred eeecCCHHHHHHHHHHh
Q 043542 51 GLCFDSEAAARAFAEKH 67 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~ 67 (99)
-|.|.|.+||-+|+++.
T Consensus 101 GLnF~se~eA~~F~~~v 117 (126)
T 2jp2_A 101 GLTFQSPADARAFDRGV 117 (126)
T ss_dssp EEEESSHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHHH
Confidence 89999999999998864
No 45
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=36.18 E-value=12 Score=20.69 Aligned_cols=19 Identities=11% Similarity=-0.036 Sum_probs=16.8
Q ss_pred eeecCCHHHHHHHHHHhCC
Q 043542 51 GLCFDSEAAARAFAEKHGW 69 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~ 69 (99)
+|...++.+++.+|.++|+
T Consensus 40 kl~~~~~~~l~~~~~~~g~ 58 (61)
T 2jpc_A 40 KLQVHKVTELLNCARRMRL 58 (61)
T ss_dssp HHTCSSHHHHHHHHHCSCC
T ss_pred HHCCCCHHHHHHHHHHcCC
Confidence 5677899999999999996
No 46
>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=35.90 E-value=35 Score=23.79 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=25.2
Q ss_pred cCCCCCcccccCCceeecCCHHHHHHHHHHhCCcEEEeec
Q 043542 37 WTSTGDPYANVGEAGLCFDSEAAARAFAEKHGWEYTVRKF 76 (99)
Q Consensus 37 Wtss~D~~sqv~~~~l~F~ske~Ai~yaek~G~~y~V~~p 76 (99)
--++|||. .|++-..-+..|.++|++++|..-
T Consensus 99 ~l~~GDP~--------i~~~~~~l~~~~~~~gi~v~viPG 130 (232)
T 2qbu_A 99 FITLGDPS--------IYSTFSYLQQRIEDMGFKTEMVPG 130 (232)
T ss_dssp EEESBCTT--------BSCSHHHHHHHHHHTTCCEEEECC
T ss_pred EEeCCCCc--------cchhHHHHHHHHHHCCCcEEEeCC
Confidence 34568874 578888889999999999999853
No 47
>4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp}
Probab=35.84 E-value=9.8 Score=24.87 Aligned_cols=34 Identities=15% Similarity=0.279 Sum_probs=22.8
Q ss_pred CcCcCCCCCcccccCCceeecCCHHH-HHHHHHHhCCcEEEeecCCC
Q 043542 34 LMGWTSTGDPYANVGEAGLCFDSEAA-ARAFAEKHGWEYTVRKFHAP 79 (99)
Q Consensus 34 LMGWtss~D~~sqv~~~~l~F~ske~-Ai~yaek~G~~y~V~~p~~~ 79 (99)
|.||.||.+.. +-. -.+||+++|..|.|..|.-+
T Consensus 8 lHGf~ss~~s~------------k~~~l~~~~~~~~~~~~v~~pdl~ 42 (202)
T 4fle_A 8 IHGFNSSPSSA------------KATTFKSWLQQHHPHIEMQIPQLP 42 (202)
T ss_dssp ECCTTCCTTCH------------HHHHHHHHHHHHCTTSEEECCCCC
T ss_pred eCCCCCCCCcc------------HHHHHHHHHHHcCCCcEEEEeCCC
Confidence 56898876521 111 23688999999999887643
No 48
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10
Probab=35.33 E-value=32 Score=22.24 Aligned_cols=27 Identities=11% Similarity=0.096 Sum_probs=22.9
Q ss_pred ceeecCCHHHHHHHHHHhCC-cEEEeec
Q 043542 50 AGLCFDSEAAARAFAEKHGW-EYTVRKF 76 (99)
Q Consensus 50 ~~l~F~ske~Ai~yaek~G~-~y~V~~p 76 (99)
.-+..++.++..+|++++|+ .|.+...
T Consensus 78 v~is~d~~~~~~~~~~~~~~~~~~~l~D 105 (163)
T 1psq_A 78 LTVSMDLPFAQKRWCGAEGLDNAIMLSD 105 (163)
T ss_dssp EEEESSCHHHHHHHHHHHTCTTSEEEEC
T ss_pred EEEECCCHHHHHHHHHhcCCCCcEEecC
Confidence 36778999999999999999 8987665
No 49
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=35.14 E-value=25 Score=22.39 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=22.9
Q ss_pred eeecCCHHHHHHHHHHhCCcEEEeec
Q 043542 51 GLCFDSEAAARAFAEKHGWEYTVRKF 76 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~~y~V~~p 76 (99)
-+..++.++..+|++++|+.|.+...
T Consensus 74 ~vs~d~~~~~~~~~~~~~~~~~~~~d 99 (163)
T 3gkn_A 74 GVSRDSVKSHDNFCAKQGFAFPLVSD 99 (163)
T ss_dssp EEESSCHHHHHHHHHHHCCSSCEEEC
T ss_pred EEeCCCHHHHHHHHHHhCCCceEEEC
Confidence 56789999999999999999988764
No 50
>2v6u_A Pterin-4A-carbinolamine dehydratase; lyase, enzyme; 1.6A {Toxoplasma gondii} PDB: 2v6s_A 2v6t_A*
Probab=34.84 E-value=23 Score=23.00 Aligned_cols=33 Identities=15% Similarity=0.282 Sum_probs=24.2
Q ss_pred CCCcCcCCCCCcccccCCceeecCCHHHHHHHHHH
Q 043542 32 NPLMGWTSTGDPYANVGEAGLCFDSEAAARAFAEK 66 (99)
Q Consensus 32 dPLMGWtss~D~~sqv~~~~l~F~ske~Ai~yaek 66 (99)
..|-||+-.+|+. .|. ....|.+-.+|++|..+
T Consensus 19 ~~l~gW~~~~~~~-~i~-r~f~F~~f~~a~~F~~~ 51 (104)
T 2v6u_A 19 KTVPQWHLTDGHL-SIK-RKFQFSDFNEAWGFMSR 51 (104)
T ss_dssp TTSTTSEECGGGC-CEE-EEEECSSHHHHHHHHHH
T ss_pred hcCCCCeEeCCcC-eEE-EEEEeCCHHHHHHHHHH
Confidence 4678998877742 232 37899999999988654
No 51
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=34.68 E-value=9 Score=30.96 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=20.7
Q ss_pred cCCHHHHHHHHHHhCCcEEEeecCCCCCCCccccccC
Q 043542 54 FDSEAAARAFAEKHGWEYTVRKFHAPLLKPKSYGDNF 90 (99)
Q Consensus 54 F~ske~Ai~yaek~G~~y~V~~p~~~~~~~ksYadNF 90 (99)
|-||++-++||+++|+++.. ..-+|-|-..||
T Consensus 164 ~lsK~Eir~~A~e~Glp~~~-----t~~kp~S~d~nl 195 (421)
T 1vl2_A 164 FKGRTDLINYAMEKGIPIKV-----SKKRPYSEDENL 195 (421)
T ss_dssp TC--CHHHHHHHHHTCCCCS-----SCCCSSEEEECS
T ss_pred cCCHHHHHHHHHHcCCCccc-----CCCCCCcCCCCe
Confidence 36999999999999998742 222444555555
No 52
>2w5f_A Endo-1,4-beta-xylanase Y; cellulosome, glycosidase, xylan degradation, hydrolase; HET: XYP; 1.90A {Clostridium thermocellum} PDB: 2wze_A* 2wys_A*
Probab=34.25 E-value=22 Score=28.85 Aligned_cols=22 Identities=9% Similarity=0.193 Sum_probs=20.1
Q ss_pred eeecCCHHHHHHHHHHhCCcEE
Q 043542 51 GLCFDSEAAARAFAEKHGWEYT 72 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~~y~ 72 (99)
++.|...++.|+||++||+...
T Consensus 242 ~~~f~~aD~~v~~A~~ngi~vr 263 (540)
T 2w5f_A 242 RVSLNRAASILNFCAQNNIAVR 263 (540)
T ss_dssp EECCTTTHHHHHHHHHTTCEEE
T ss_pred eechhHHHHHHHHHHHCCCEEE
Confidence 4789999999999999999975
No 53
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=34.11 E-value=28 Score=21.99 Aligned_cols=28 Identities=7% Similarity=0.262 Sum_probs=23.9
Q ss_pred ceeecCCHHHHHHHHHHhCCcEEEeecC
Q 043542 50 AGLCFDSEAAARAFAEKHGWEYTVRKFH 77 (99)
Q Consensus 50 ~~l~F~ske~Ai~yaek~G~~y~V~~p~ 77 (99)
..+..++.+++.+|++++|+.|.+....
T Consensus 74 v~is~d~~~~~~~~~~~~~~~~~~~~d~ 101 (160)
T 1xvw_A 74 LAISVGPPPTHKIWATQSGFTFPLLSDF 101 (160)
T ss_dssp EEEESCCHHHHHHHHHHHTCCSCEEECT
T ss_pred EEEeCCCHHHHHHHHHhcCCCceEEecC
Confidence 3677899999999999999999877653
No 54
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=34.03 E-value=25 Score=25.98 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=16.7
Q ss_pred cCCHHHHHHHHHHhCCcEEE
Q 043542 54 FDSEAAARAFAEKHGWEYTV 73 (99)
Q Consensus 54 F~ske~Ai~yaek~G~~y~V 73 (99)
-..++++++||++||+.+.-
T Consensus 175 mar~~~l~~fA~~h~l~~it 194 (206)
T 3mio_A 175 MAHTDELRVFADEHGLALIT 194 (206)
T ss_dssp BCCHHHHHHHHHHHTCEEEE
T ss_pred cCCHHHHHHHHHHcCCcEEE
Confidence 35689999999999998763
No 55
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=33.10 E-value=39 Score=21.92 Aligned_cols=28 Identities=7% Similarity=-0.064 Sum_probs=23.6
Q ss_pred ceeecCCHHHHHHHHHHhCC--cEEEeecC
Q 043542 50 AGLCFDSEAAARAFAEKHGW--EYTVRKFH 77 (99)
Q Consensus 50 ~~l~F~ske~Ai~yaek~G~--~y~V~~p~ 77 (99)
.-+..++.++.-+|++++|+ .|.+....
T Consensus 75 v~Is~d~~~~~~~~~~~~~~~~~~~~l~D~ 104 (162)
T 1tp9_A 75 LCISVNDPFVMKAWAKSYPENKHVKFLADG 104 (162)
T ss_dssp EEEESSCHHHHHHHHHTCTTCSSEEEEECT
T ss_pred EEEECCCHHHHHHHHHhcCCCCCeEEEECC
Confidence 36788999999999999999 89877653
No 56
>2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel; 1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB: 2zq0_A* 2jke_A* 2jka_A* 2jkp_A*
Probab=32.70 E-value=22 Score=30.88 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=20.3
Q ss_pred eecCCHHHHHHHHHHhCCcEEEe
Q 043542 52 LCFDSEAAARAFAEKHGWEYTVR 74 (99)
Q Consensus 52 l~F~ske~Ai~yaek~G~~y~V~ 74 (99)
+..++-..=|+||.+|||+|.+.
T Consensus 368 ~nte~~K~YIDFAA~~G~eyvLv 390 (738)
T 2d73_A 368 ANTANVKRYIDFAAAHGFDAVLV 390 (738)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE
Confidence 46677788899999999999998
No 57
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=32.46 E-value=37 Score=22.39 Aligned_cols=27 Identities=11% Similarity=0.205 Sum_probs=23.2
Q ss_pred eeecCCHHHHHHHHHHhCCcEEEeecC
Q 043542 51 GLCFDSEAAARAFAEKHGWEYTVRKFH 77 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~~y~V~~p~ 77 (99)
-++-++.++.-+|++++|+.|.|....
T Consensus 72 ~is~d~~~~~~~~~~~~~~~fp~l~D~ 98 (164)
T 4gqc_A 72 AISVDSPWCLKKFKDENRLAFNLLSDY 98 (164)
T ss_dssp EEESSCHHHHHHHHHHTTCCSEEEECT
T ss_pred EecCCCHHHHHHHHHhcCcccceeecC
Confidence 567899999999999999999886543
No 58
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=32.43 E-value=24 Score=28.20 Aligned_cols=17 Identities=18% Similarity=0.290 Sum_probs=14.5
Q ss_pred HHHHHHhCCcEEEeecC
Q 043542 61 RAFAEKHGWEYTVRKFH 77 (99)
Q Consensus 61 i~yaek~G~~y~V~~p~ 77 (99)
..||+++||.++|.+-.
T Consensus 153 ~r~Ae~~g~k~evl~~~ 169 (365)
T 1gqe_A 153 LRWAESRGFKTEIIEES 169 (365)
T ss_dssp HHHHHHTTCEEEEEEEE
T ss_pred HHHHHHCCCeEEEEecC
Confidence 47899999999998754
No 59
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S-adenosylmethi transferase; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A*
Probab=32.37 E-value=36 Score=24.38 Aligned_cols=32 Identities=19% Similarity=0.212 Sum_probs=25.2
Q ss_pred CCCCCcccccCCceeecCCHHHHHHHHHHhCCcEEEeecC
Q 043542 38 TSTGDPYANVGEAGLCFDSEAAARAFAEKHGWEYTVRKFH 77 (99)
Q Consensus 38 tss~D~~sqv~~~~l~F~ske~Ai~yaek~G~~y~V~~p~ 77 (99)
-++|||. .|++-..-+..|.+.|++++|..--
T Consensus 102 l~~GDP~--------~~~~~~~l~~~l~~~gi~v~viPGi 133 (259)
T 2e0n_A 102 VSVGDGG--------FYSTASAIIERARRDGLDCSMTPGI 133 (259)
T ss_dssp EESBCTT--------BSCTHHHHHHHHHTTTCCEEEECCC
T ss_pred EeCCCCc--------ccccHHHHHHHHHHCCCCEEEeCCh
Confidence 3468874 5788888889999999999998543
No 60
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=32.34 E-value=36 Score=21.67 Aligned_cols=19 Identities=26% Similarity=0.211 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhCCcEEEee
Q 043542 57 EAAARAFAEKHGWEYTVRK 75 (99)
Q Consensus 57 ke~Ai~yaek~G~~y~V~~ 75 (99)
.++|++|.+++|+.++|..
T Consensus 78 ~~~ai~~L~~~~v~vEvl~ 96 (106)
T 3dhx_A 78 TQAAIAWLQEHHVKVEVLG 96 (106)
T ss_dssp HHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHCCCEEEEee
Confidence 5789999999999998764
No 61
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=32.22 E-value=10 Score=24.50 Aligned_cols=16 Identities=25% Similarity=0.086 Sum_probs=13.5
Q ss_pred eecCCHHHHHHHHHHh
Q 043542 52 LCFDSEAAARAFAEKH 67 (99)
Q Consensus 52 l~F~ske~Ai~yaek~ 67 (99)
-.|+|.++||+.|+.+
T Consensus 126 ~if~s~~~Al~~~~~~ 141 (143)
T 3llo_A 126 LLFHSIHDAVLGSQVR 141 (143)
T ss_dssp GEESSHHHHHHHTSSC
T ss_pred eEECcHHHHHHHHHhc
Confidence 3699999999998754
No 62
>2zib_A Type II antifreeze protein; thermal hysteresis, lectin; 1.34A {Brachyopsis rostratus}
Probab=31.87 E-value=26 Score=22.17 Aligned_cols=38 Identities=18% Similarity=0.039 Sum_probs=25.8
Q ss_pred CCCCcCcCCCCCcccccCCceeecCCHHHHHHHHHHhCCcE
Q 043542 31 ENPLMGWTSTGDPYANVGEAGLCFDSEAAARAFAEKHGWEY 71 (99)
Q Consensus 31 ~dPLMGWtss~D~~sqv~~~~l~F~ske~Ai~yaek~G~~y 71 (99)
..|..||..-++--=.+ .-.-.|-++|..+|+.+|=..
T Consensus 8 ~~~~~~~~~~~~~CY~~---~~~~~~w~~A~~~C~~~g~~L 45 (133)
T 2zib_A 8 LVCPAGWTLHGQRCFYS---EATAMTWDLAEANCVNKGGHL 45 (133)
T ss_dssp CCCCTTCEEETTEEEEE---EEEEECHHHHHHHHHHTTSEE
T ss_pred eeCCCCEEEeCCEEEEE---ECCccCHHHHHHHHHHCCCEE
Confidence 46788888887753333 112257799999999988543
No 63
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=31.63 E-value=39 Score=21.28 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=23.5
Q ss_pred eeecCCHHHHHHHHHHhCCcEEEeecCC
Q 043542 51 GLCFDSEAAARAFAEKHGWEYTVRKFHA 78 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~~y~V~~p~~ 78 (99)
.|-.=+..+|+.-|++.|++.....|..
T Consensus 25 ~lGv~~~~eAl~~A~e~~LDLVevsp~a 52 (78)
T 1tif_A 25 QLGIKSKQEALEIAARRNLDLVLVAPNA 52 (78)
T ss_dssp EEEEEEHHHHHHHHHHTTCEEEEEETTS
T ss_pred CCCcccHHHHHHHHHHcCCCEEEECCCC
Confidence 3455688999999999999999888864
No 64
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=31.54 E-value=39 Score=22.48 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=23.5
Q ss_pred ceeecCCHHHHHHHHHHhCCc--EEEeecC
Q 043542 50 AGLCFDSEAAARAFAEKHGWE--YTVRKFH 77 (99)
Q Consensus 50 ~~l~F~ske~Ai~yaek~G~~--y~V~~p~ 77 (99)
.-+..++.+++.+|++++|+. |.+....
T Consensus 71 v~Is~d~~~~~~~~~~~~~~~~~fp~l~D~ 100 (167)
T 2wfc_A 71 ACMAVNDSFVMDAWGKAHGADDKVQMLADP 100 (167)
T ss_dssp EEEESSCHHHHHHHHHHTTCTTTSEEEECT
T ss_pred EEEeCCCHHHHHHHHHhcCCCcceEEEECC
Confidence 367889999999999999998 8877653
No 65
>3ktm_A Amyloid beta A4 protein; protein structure, alzheimer disease, amyloidosis, apoptosis, cell adhesion, copper, disease mutation, disulfi endocytosis; 2.70A {Homo sapiens} PDB: 1owt_A 2fkl_A
Probab=31.11 E-value=25 Score=25.88 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=19.1
Q ss_pred eeecCCHHHHHHHHHHhCCcEEE
Q 043542 51 GLCFDSEAAARAFAEKHGWEYTV 73 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~~y~V 73 (99)
+-.|.++++.+.||++.--+.+|
T Consensus 44 ~~C~~~k~eIL~YCrkvYPel~I 66 (191)
T 3ktm_A 44 KTCIDTKEGILQYCQEVYPELQI 66 (191)
T ss_dssp CBCCCSHHHHHHHHHHHCTTSCE
T ss_pred cccccChHHHHHHHHHHCCCccc
Confidence 56899999999999999655554
No 66
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=30.81 E-value=29 Score=25.62 Aligned_cols=19 Identities=21% Similarity=0.207 Sum_probs=16.3
Q ss_pred CCHHHHHHHHHHhCCcEEE
Q 043542 55 DSEAAARAFAEKHGWEYTV 73 (99)
Q Consensus 55 ~ske~Ai~yaek~G~~y~V 73 (99)
..++++++||++||+++.-
T Consensus 176 ar~~~l~~fA~~h~l~iit 194 (204)
T 1tks_A 176 MRLDDCIQFGKKHGIKIIN 194 (204)
T ss_dssp CBHHHHHHHHHHHTCCEEE
T ss_pred CCHHHHHHHHHHcCCcEEE
Confidence 5689999999999998753
No 67
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A {Rhodobacter capsulatus} PDB: 3nei_A
Probab=30.61 E-value=41 Score=24.53 Aligned_cols=32 Identities=13% Similarity=0.020 Sum_probs=24.4
Q ss_pred CCCCCcccccCCceeecCCHHHHHHHHHHhCCcEEEeecC
Q 043542 38 TSTGDPYANVGEAGLCFDSEAAARAFAEKHGWEYTVRKFH 77 (99)
Q Consensus 38 tss~D~~sqv~~~~l~F~ske~Ai~yaek~G~~y~V~~p~ 77 (99)
-++|||. -|+.--+-+..|.+.|++++|..--
T Consensus 82 L~~GDP~--------iyg~~~~l~~~l~~~gi~veviPGi 113 (264)
T 3ndc_A 82 LHSGDLS--------IWSAMGEQLRRLRALNIPYDVTPGV 113 (264)
T ss_dssp EESBCTT--------SSCSHHHHHHHHHHTTCCEEEECCC
T ss_pred EeCCCCc--------cccHHHHHHHHHHhCCCCEEEeCCH
Confidence 3567774 5777777888889999999988543
No 68
>3tbi_A RNA polymerase-associated protein GP33; transcription accessory protein, transcription; 3.00A {Enterobacteria phage T4}
Probab=30.29 E-value=22 Score=24.27 Aligned_cols=16 Identities=31% Similarity=0.254 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhCCcEE
Q 043542 57 EAAARAFAEKHGWEYT 72 (99)
Q Consensus 57 ke~Ai~yaek~G~~y~ 72 (99)
.|+++.||+.++|++.
T Consensus 59 LEA~~~w~EEnsIe~~ 74 (115)
T 3tbi_A 59 LEATTAFLEENSIPET 74 (115)
T ss_dssp HHHHHHHHHHHTCCGG
T ss_pred HHHHHHHHHHcCCCHH
Confidence 5889999999999753
No 69
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=30.13 E-value=27 Score=27.79 Aligned_cols=17 Identities=41% Similarity=0.526 Sum_probs=14.7
Q ss_pred HHHHHHhCCcEEEeecC
Q 043542 61 RAFAEKHGWEYTVRKFH 77 (99)
Q Consensus 61 i~yaek~G~~y~V~~p~ 77 (99)
..||+++||+++|.+-.
T Consensus 132 ~r~ae~~g~k~ev~~~~ 148 (354)
T 3d5a_X 132 LRFAEEMGFETEVLDSH 148 (354)
T ss_dssp HHHHHHHTCEEEEEEEE
T ss_pred HHHHHHcCCeEEEEeCC
Confidence 57999999999998754
No 70
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0
Probab=30.07 E-value=46 Score=21.47 Aligned_cols=27 Identities=15% Similarity=0.144 Sum_probs=23.1
Q ss_pred eeecCCHHHHHHHHHHhCC-cEEEeecC
Q 043542 51 GLCFDSEAAARAFAEKHGW-EYTVRKFH 77 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~-~y~V~~p~ 77 (99)
-+..++.++..+||+++|+ .|.+....
T Consensus 82 ~is~d~~~~~~~~~~~~~~~~~~~l~D~ 109 (166)
T 3p7x_A 82 TISADLPFAQKRWCASAGLDNVITLSDH 109 (166)
T ss_dssp EEESSCHHHHHHHHHHHTCSSCEEEECT
T ss_pred EEECCCHHHHHHHHHHcCCCceEEccCC
Confidence 5678999999999999999 88877644
No 71
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=30.05 E-value=27 Score=27.99 Aligned_cols=17 Identities=29% Similarity=0.816 Sum_probs=14.7
Q ss_pred HHHHHHhCCcEEEeecC
Q 043542 61 RAFAEKHGWEYTVRKFH 77 (99)
Q Consensus 61 i~yaek~G~~y~V~~p~ 77 (99)
..||+++||+++|.+-.
T Consensus 150 ~r~Ae~~g~kvevl~~~ 166 (371)
T 1zbt_A 150 QKYAENQGWKFEVMEAS 166 (371)
T ss_dssp HHHHHHHTCEEEEEEEE
T ss_pred HHHHHHcCCeEEEEecC
Confidence 57999999999998754
No 72
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Probab=29.00 E-value=34 Score=25.78 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=17.4
Q ss_pred cCCHHHHHHHHHHhCCcEEEe
Q 043542 54 FDSEAAARAFAEKHGWEYTVR 74 (99)
Q Consensus 54 F~ske~Ai~yaek~G~~y~V~ 74 (99)
-..++++++||++||+++.-.
T Consensus 193 mar~~~l~~fA~~h~L~iitI 213 (233)
T 1k4i_A 193 MLRGDECVAFARRWGLKVCTI 213 (233)
T ss_dssp ECCHHHHHHHHHHTTCEEEEH
T ss_pred cCCHHHHHHHHHHcCCcEEEH
Confidence 357899999999999987643
No 73
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Probab=28.99 E-value=26 Score=28.01 Aligned_cols=17 Identities=29% Similarity=0.597 Sum_probs=14.6
Q ss_pred HHHHHHhCCcEEEeecC
Q 043542 61 RAFAEKHGWEYTVRKFH 77 (99)
Q Consensus 61 i~yaek~G~~y~V~~p~ 77 (99)
..||+++||+++|.+-.
T Consensus 141 ~r~Ae~~g~k~evl~~~ 157 (365)
T 2ihr_1 141 TRFAERQGFQVEVVDLT 157 (365)
T ss_dssp HHHHHTTTCEEEEEEEE
T ss_pred HHHHHHcCCeEEEEecC
Confidence 57999999999998754
No 74
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=28.65 E-value=32 Score=24.59 Aligned_cols=17 Identities=53% Similarity=0.679 Sum_probs=15.2
Q ss_pred eeecCCHHHHHHHHHHh
Q 043542 51 GLCFDSEAAARAFAEKH 67 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~ 67 (99)
-|.|.|.++|-+|++..
T Consensus 92 GLnF~Se~eA~~F~~~~ 108 (168)
T 1i2h_A 92 GLGFSSEHHLSKFAEKF 108 (168)
T ss_dssp EEEESSHHHHHHHHHHH
T ss_pred EeccCCHHHHHHHHHHH
Confidence 79999999999998764
No 75
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A
Probab=28.65 E-value=30 Score=27.45 Aligned_cols=17 Identities=35% Similarity=0.905 Sum_probs=14.7
Q ss_pred HHHHHHhCCcEEEeecC
Q 043542 61 RAFAEKHGWEYTVRKFH 77 (99)
Q Consensus 61 i~yaek~G~~y~V~~p~ 77 (99)
..||+++||+++|.+-.
T Consensus 113 ~r~ae~~g~kvevl~~~ 129 (342)
T 1rq0_A 113 TRYAERKGWNLEVAEIH 129 (342)
T ss_dssp HHHHHHHTCEEEEEEEE
T ss_pred HHHHHHcCCeEEEEecC
Confidence 57999999999998754
No 76
>2z6r_A Diphthine synthase; methyltransferase, S-adenosyl-L-methionine, transferase; HET: SAH MES; 1.50A {Pyrococcus horikoshii} PDB: 2dek_A* 1wng_A* 1vce_A* 2ed3_A* 2e4r_A* 2owg_A* 2ek3_A* 2pcm_A* 2p5c_A* 2hut_A* 2emr_A* 2el3_A* 2el0_A* 2ejk_A* 2eld_A* 2el2_A* 2eka_A* 2eh5_A* 2pcg_A* 2el1_A* ...
Probab=28.51 E-value=38 Score=24.39 Aligned_cols=31 Identities=29% Similarity=0.316 Sum_probs=24.2
Q ss_pred CCCCCcccccCCceeecCCHHHHHHHHHHhCCcEEEeec
Q 043542 38 TSTGDPYANVGEAGLCFDSEAAARAFAEKHGWEYTVRKF 76 (99)
Q Consensus 38 tss~D~~sqv~~~~l~F~ske~Ai~yaek~G~~y~V~~p 76 (99)
-++|||+ .|.+--.-+..|.++|++++|..-
T Consensus 83 l~~GDP~--------i~~~~~~l~~~l~~~gi~veviPG 113 (265)
T 2z6r_A 83 LTPGDPL--------VATTHAELRIRAKRAGVESYVIHA 113 (265)
T ss_dssp EESBCTT--------SSSSTHHHHHHHHHTTCCEEEECC
T ss_pred EECCCCc--------CCCCHHHHHHHHHHCCCcEEEECC
Confidence 3468875 477777888899999999999853
No 77
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.49A {Clostridium difficile}
Probab=28.24 E-value=47 Score=23.92 Aligned_cols=33 Identities=18% Similarity=0.041 Sum_probs=25.1
Q ss_pred cCCCCCcccccCCceeecCCHHHHHHHHHHhCCcEEEeecC
Q 043542 37 WTSTGDPYANVGEAGLCFDSEAAARAFAEKHGWEYTVRKFH 77 (99)
Q Consensus 37 Wtss~D~~sqv~~~~l~F~ske~Ai~yaek~G~~y~V~~p~ 77 (99)
.-++|||. -|+.--+-+..|.+.|++++|..--
T Consensus 82 ~l~~GDP~--------i~~~~~~l~~~l~~~gi~veviPGi 114 (253)
T 4e16_A 82 RLQTGDFS--------IYGSIREQVEDLNKLNIDYDCTPGV 114 (253)
T ss_dssp EEESBCTT--------TTCCHHHHHHHHHHHTCCEEEECCC
T ss_pred EEeCCCCc--------cccCHHHHHHHHHHCCCCEEEECCH
Confidence 34577874 5777777888999999999988643
No 78
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=28.18 E-value=27 Score=26.33 Aligned_cols=36 Identities=22% Similarity=0.228 Sum_probs=27.3
Q ss_pred eeecCCHHHHHHHHHHhCCcEEEeecCCCCCCCcccc
Q 043542 51 GLCFDSEAAARAFAEKHGWEYTVRKFHAPLLKPKSYG 87 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~~y~V~~p~~~~~~~ksYa 87 (99)
-++-++.++.-+||+++|++|.|..... ....+.||
T Consensus 59 gis~D~~~~~~~f~~~~~l~fp~l~D~~-~~v~~~yg 94 (322)
T 4eo3_A 59 GISRDSVEALKRFKEKNDLKVTLLSDPE-GILHEFFN 94 (322)
T ss_dssp EEESCCHHHHHHHHHHHTCCSEEEECTT-CHHHHHTT
T ss_pred EEeCCCHHHHHHHHHhhCCceEEEEcCc-hHHHHhcC
Confidence 5788999999999999999999876543 22334454
No 79
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=27.90 E-value=53 Score=19.16 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=15.4
Q ss_pred ecCCHHHHHHHHHHh---CCcEEEe
Q 043542 53 CFDSEAAARAFAEKH---GWEYTVR 74 (99)
Q Consensus 53 ~F~ske~Ai~yaek~---G~~y~V~ 74 (99)
-|.|+++|.+.|++. |++..|.
T Consensus 52 pf~~~~~A~~~~~~L~~~g~~~~iv 76 (79)
T 1x60_A 52 AFSSKDNADTLAARAKNAGFDAIVI 76 (79)
T ss_dssp EESSHHHHHHHHHHHHHHTSCCEEE
T ss_pred CcCCHHHHHHHHHHHHHcCCceEEE
Confidence 488888888888753 6665554
No 80
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.76 E-value=58 Score=19.23 Aligned_cols=25 Identities=12% Similarity=0.189 Sum_probs=20.2
Q ss_pred ecCCHHHHHHHHHHhCCcEEEeecC
Q 043542 53 CFDSEAAARAFAEKHGWEYTVRKFH 77 (99)
Q Consensus 53 ~F~ske~Ai~yaek~G~~y~V~~p~ 77 (99)
.+.+.+++.+++++.|+++.|-...
T Consensus 30 ~~~~~~~~~~~~~~~~~P~vvKp~~ 54 (108)
T 2cqy_A 30 VVKDAEEAVRIAREIGYPVMIKASA 54 (108)
T ss_dssp CBSSHHHHHHHHHHHCSSEEEEETT
T ss_pred ccCCHHHHHHHHHhcCCCEEEEECC
Confidence 5678999999999999998665543
No 81
>4a56_A PULS, pullulanase secretion protein PULS; protein transport, T2SS; 1.24A {Klebsiella oxytoca}
Probab=27.74 E-value=28 Score=22.74 Aligned_cols=13 Identities=38% Similarity=0.695 Sum_probs=12.0
Q ss_pred HHHHHHHHhCCcE
Q 043542 59 AARAFAEKHGWEY 71 (99)
Q Consensus 59 ~Ai~yaek~G~~y 71 (99)
.||.||+.+||+-
T Consensus 38 ~a~~~A~~~~Wd~ 50 (93)
T 4a56_A 38 AAINVGKKRGWAN 50 (93)
T ss_dssp HHHHHHHHHTCCC
T ss_pred HHHHHHHHcCCCh
Confidence 7999999999986
No 82
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=27.64 E-value=42 Score=21.01 Aligned_cols=27 Identities=15% Similarity=0.459 Sum_probs=23.1
Q ss_pred ceeecCCHHHHHHHHHHhCCcEEEeec
Q 043542 50 AGLCFDSEAAARAFAEKHGWEYTVRKF 76 (99)
Q Consensus 50 ~~l~F~ske~Ai~yaek~G~~y~V~~p 76 (99)
..+..++.++..+|++++|+.|.+...
T Consensus 61 v~v~~d~~~~~~~~~~~~~~~~~~~~~ 87 (151)
T 3raz_A 61 VGIALDTSDNIGNFLKQTPVSYPIWRY 87 (151)
T ss_dssp EEEESSCHHHHHHHHHHSCCSSCEEEE
T ss_pred EEEECCChHHHHHHHHHcCCCCceEec
Confidence 367889999999999999999887653
No 83
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}
Probab=27.58 E-value=38 Score=24.65 Aligned_cols=40 Identities=18% Similarity=0.087 Sum_probs=28.4
Q ss_pred ceeecCCHHHHHHHHHHhCC-cEEEeecCCCCCCCcccccc
Q 043542 50 AGLCFDSEAAARAFAEKHGW-EYTVRKFHAPLLKPKSYGDN 89 (99)
Q Consensus 50 ~~l~F~ske~Ai~yaek~G~-~y~V~~p~~~~~~~ksYadN 89 (99)
.-++.++.++.-+||+++|+ .|.+..........+.||-.
T Consensus 86 vgIS~Ds~~~~~~f~~~~gl~~fplLsD~~~~~vak~yGv~ 126 (224)
T 3keb_A 86 IVITVDSPSSLARARHEHGLPNIALLSTLRGRDFHKRYGVL 126 (224)
T ss_dssp EEEESSCHHHHHHHHHHHCCTTCEEEESTTCTTHHHHTTCB
T ss_pred EEEECCCHHHHHHHHHHcCCCCceEEEcCCchHHHHHhCCc
Confidence 36788999999999999999 68877754212234455543
No 84
>3a24_A Alpha-galactosidase; glycoside hydrolase family 97, retaining glycosidase; HET: MES; 2.30A {Bacteroides thetaiotaomicron}
Probab=27.45 E-value=31 Score=29.36 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=21.7
Q ss_pred eecCCHHHHHHHHHHhCCcEEEeec
Q 043542 52 LCFDSEAAARAFAEKHGWEYTVRKF 76 (99)
Q Consensus 52 l~F~ske~Ai~yaek~G~~y~V~~p 76 (99)
+..++-..=|+||.++||+|.+...
T Consensus 306 ~n~~~~k~yIDfAa~~G~~yvlvD~ 330 (641)
T 3a24_A 306 VNNPTYKAYIDFASANGIEYVILDE 330 (641)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEECT
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEec
Confidence 4777888999999999999999843
No 85
>1t0f_A Transposon TN7 transposition protein TNSA; protein-protein complex, mixed alpha-beta, DNA binding protein; 1.85A {Escherichia coli} SCOP: a.4.5.27 c.52.1.16 PDB: 1f1z_A
Probab=26.87 E-value=46 Score=24.75 Aligned_cols=22 Identities=5% Similarity=0.006 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHhCCcEEEeecC
Q 043542 56 SEAAARAFAEKHGWEYTVRKFH 77 (99)
Q Consensus 56 ske~Ai~yaek~G~~y~V~~p~ 77 (99)
-.|.+-.||+.+||+|.|....
T Consensus 148 k~eier~y~~~~Gi~~~IvTe~ 169 (276)
T 1t0f_A 148 KLELERRYWQQKQIPWFIFTDK 169 (276)
T ss_dssp HHHHHHHHHHHHTCCEEEECGG
T ss_pred HHHHHHHHHHHcCCEEEEECcc
Confidence 3466789999999999998654
No 86
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=26.68 E-value=42 Score=22.24 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=23.0
Q ss_pred eeecCCHHHHHHHHHHhCCcEEEeec
Q 043542 51 GLCFDSEAAARAFAEKHGWEYTVRKF 76 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~~y~V~~p 76 (99)
-+..++.++..+|++++|+.|.+...
T Consensus 90 ~Vs~D~~~~~~~~~~~~~~~f~~l~D 115 (179)
T 3ixr_A 90 GVSRDSVKSHDSFCAKQGFTFPLVSD 115 (179)
T ss_dssp EEESCCHHHHHHHHHHHTCCSCEEEC
T ss_pred EEcCCCHHHHHHHHHHcCCceEEEEC
Confidence 57789999999999999999987764
No 87
>2hiq_A Hypothetical protein YDHR; hypothetical protein JW1657, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: d.58.4.12 PDB: 1wd6_A
Probab=26.66 E-value=27 Score=23.65 Aligned_cols=29 Identities=34% Similarity=0.529 Sum_probs=22.1
Q ss_pred cCCCCCcccccCCceeecCCHHHHHHHHHHh
Q 043542 37 WTSTGDPYANVGEAGLCFDSEAAARAFAEKH 67 (99)
Q Consensus 37 Wtss~D~~sqv~~~~l~F~ske~Ai~yaek~ 67 (99)
||-+-|+.. .++ ..-|+|+++|.+|.+.|
T Consensus 48 Wte~e~t~~-aGG-iYLFes~~~AeaY~~~h 76 (113)
T 2hiq_A 48 WTESEKNHE-AGG-IYLFTDEKSALAYLEKH 76 (113)
T ss_dssp EEEETTTTE-EEE-EEEESSHHHHHHHHHHH
T ss_pred EEEcCCCCe-eeE-EEEeCCHHHHHHHHHHH
Confidence 777777642 233 56799999999999886
No 88
>1ta3_B Endo-1,4-beta-xylanase; beta alpha barrel (XIP-I), beta alpha barrel (xylanase), HYD inhibitor-hydrolase complex; HET: NAG; 1.70A {Emericella nidulans} SCOP: c.1.8.3
Probab=26.28 E-value=29 Score=26.05 Aligned_cols=26 Identities=8% Similarity=0.130 Sum_probs=22.4
Q ss_pred eeecCCHHHHHHHHHHhCCcEEEeec
Q 043542 51 GLCFDSEAAARAFAEKHGWEYTVRKF 76 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~~y~V~~p 76 (99)
+..|...++.|+||++||+......+
T Consensus 59 ~~~f~~~D~~v~~a~~~gi~v~ghtl 84 (303)
T 1ta3_B 59 NFGWSGADYLVDYATQHNKKVRGHTL 84 (303)
T ss_dssp BCCCHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ccCchHHHHHHHHHHHCCCEEEEeec
Confidence 57899999999999999999875544
No 89
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=26.18 E-value=51 Score=20.72 Aligned_cols=24 Identities=8% Similarity=-0.216 Sum_probs=19.1
Q ss_pred eeecCC-----HHHHHHHHHHhCCcEEEe
Q 043542 51 GLCFDS-----EAAARAFAEKHGWEYTVR 74 (99)
Q Consensus 51 ~l~F~s-----ke~Ai~yaek~G~~y~V~ 74 (99)
.|.+.- .++|++|.+++|+.++|.
T Consensus 67 ~v~l~G~~~~~~~~ai~~L~~~~v~vEvl 95 (98)
T 3ced_A 67 VLHIPYISSVDFGKFEKELIERQVKMEVL 95 (98)
T ss_dssp EEEESCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEeCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 555543 578999999999999886
No 90
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1
Probab=26.04 E-value=25 Score=28.02 Aligned_cols=17 Identities=18% Similarity=0.431 Sum_probs=14.5
Q ss_pred HHHHHHhCCcEEEeecC
Q 043542 61 RAFAEKHGWEYTVRKFH 77 (99)
Q Consensus 61 i~yaek~G~~y~V~~p~ 77 (99)
..||+++||+++|.+-.
T Consensus 136 ~r~ae~~g~k~ev~~~~ 152 (360)
T 2b3t_B 136 SRYAEARRWRVEIMSAS 152 (360)
T ss_dssp HHHHHHTTCCCCEEEEE
T ss_pred HHHHHHcCCeEEEEecC
Confidence 47999999999998754
No 91
>2uwf_A Endoxylanase, alkaline active endoxylanase; hydrolase, xylan degradation, xylanase structure, glycosidase, alkaliphilic; 2.10A {Bacillus halodurans} PDB: 2f8q_A 2fgl_A*
Probab=25.78 E-value=24 Score=27.24 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=22.2
Q ss_pred eeecCCHHHHHHHHHHhCCcEEEeec
Q 043542 51 GLCFDSEAAARAFAEKHGWEYTVRKF 76 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~~y~V~~p 76 (99)
+..|...+..|+||++||+......+
T Consensus 62 ~~~f~~~D~~v~~a~~~gi~v~ghtl 87 (356)
T 2uwf_A 62 EWNWEGADKIVEFARKHNMELRFHTL 87 (356)
T ss_dssp BCCCHHHHHHHHHHHHHTCEEEECCS
T ss_pred ccCchHHHHHHHHHHHCCCEEEEeec
Confidence 57899999999999999999875543
No 92
>1r85_A Endo-1,4-beta-xylanase; hydrolase; HET: GOL; 1.45A {Geobacillus stearothermophilus} SCOP: c.1.8.3 PDB: 1hiz_A* 1r87_A* 3mmd_A* 1r86_A
Probab=25.69 E-value=31 Score=26.95 Aligned_cols=26 Identities=15% Similarity=0.341 Sum_probs=23.1
Q ss_pred eeecCCHHHHHHHHHHhCCcEEEeec
Q 043542 51 GLCFDSEAAARAFAEKHGWEYTVRKF 76 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~~y~V~~p 76 (99)
+..|...+..|+||++||+......+
T Consensus 72 ~~~f~~~D~~v~~a~~~gi~vrghtl 97 (379)
T 1r85_A 72 KFNFEQADRIVKFAKANGMDIRFHTL 97 (379)
T ss_dssp BCCCHHHHHHHHHHHHTTCEEEEECS
T ss_pred ccCchhHHHHHHHHHHCCCEEEEecc
Confidence 67899999999999999999887665
No 93
>1i1w_A Endo-1,4-beta-xylanase; xylan degradation, hydrolase, glycosidase, enzyme, ultra HIG resolution, cryo temperature, 1; HET: PCA; 0.89A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1i1x_A* 2bnj_A* 1gok_A 1gom_A 1goo_A 1goq_A* 1gor_A* 1k6a_A 3o2l_A 3nyd_A* 1tux_A 1b31_A 1b30_A 1b3v_A* 1b3w_A* 1b3x_A* 1b3y_A* 1b3z_A* 1bg4_A
Probab=25.67 E-value=30 Score=25.83 Aligned_cols=26 Identities=12% Similarity=0.142 Sum_probs=22.2
Q ss_pred eeecCCHHHHHHHHHHhCCcEEEeec
Q 043542 51 GLCFDSEAAARAFAEKHGWEYTVRKF 76 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~~y~V~~p 76 (99)
+..|...++.|++|++||+......+
T Consensus 60 ~~~f~~~D~~v~~a~~~gi~v~ghtl 85 (303)
T 1i1w_A 60 NFNFAGADYLVNWAQQNGKLIRGHTL 85 (303)
T ss_dssp BCCCHHHHHHHHHHHHHTCEEEEEEE
T ss_pred ccChhhHHHHHHHHHHCCCEEEEeec
Confidence 57899999999999999999875543
No 94
>1va0_A Uroporphyrin-III C-methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.97A {Thermus thermophilus} SCOP: c.90.1.1 PDB: 1v9a_A
Probab=25.66 E-value=64 Score=22.68 Aligned_cols=30 Identities=27% Similarity=0.342 Sum_probs=23.9
Q ss_pred CCCCcccccCCceeecCCHHHHHHHHHHhCCcEEEeec
Q 043542 39 STGDPYANVGEAGLCFDSEAAARAFAEKHGWEYTVRKF 76 (99)
Q Consensus 39 ss~D~~sqv~~~~l~F~ske~Ai~yaek~G~~y~V~~p 76 (99)
.+|||+ -|++--.-+..|.++|++++|..-
T Consensus 82 ~~GDP~--------i~~~~~~l~~~l~~~gi~v~viPG 111 (239)
T 1va0_A 82 KGGDPM--------VFGRGGEEVLFLLRHGVPVEVVPG 111 (239)
T ss_dssp ESBCTT--------SSSSHHHHHHHHHHTTCCEEEECC
T ss_pred eCCCCc--------cccCHHHHHHHHHHCCCcEEEECC
Confidence 567764 577888888899999999999853
No 95
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=25.65 E-value=30 Score=20.64 Aligned_cols=20 Identities=10% Similarity=0.091 Sum_probs=16.8
Q ss_pred eeecCCHHHHHHHHHHhCCc
Q 043542 51 GLCFDSEAAARAFAEKHGWE 70 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~~ 70 (99)
+|.-.++.+++.+|.++||.
T Consensus 63 kL~~~~~~~l~~~a~~~gl~ 82 (82)
T 1je8_A 63 KMKLKSRVEAAVWVHQERIF 82 (82)
T ss_dssp HTTCSSHHHHHHHHHHTTCC
T ss_pred HHcCCCHHHHHHHHHHcCCC
Confidence 46677899999999999973
No 96
>1v0l_A Endo-1,4-beta-xylanase A; glycoside hydrolase family 10, xylan degradation, isofagomine, hydrolase; 0.98A {Streptomyces lividans} SCOP: c.1.8.3 PDB: 1e0x_A 1e0w_A* 1od8_A 1v0k_A 1v0m_A 1v0n_A 1e0v_A* 1xas_A 2g3i_A 2g3j_A* 2g4f_A 1v6y_A
Probab=25.64 E-value=30 Score=26.12 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=22.1
Q ss_pred eeecCCHHHHHHHHHHhCCcEEEeec
Q 043542 51 GLCFDSEAAARAFAEKHGWEYTVRKF 76 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~~y~V~~p 76 (99)
+..|...+..|+||++||+......+
T Consensus 58 ~~~f~~~D~~v~~a~~~gi~v~ghtl 83 (313)
T 1v0l_A 58 QFNFSSADRVYNWAVQNGKQVRGHTL 83 (313)
T ss_dssp BCCCHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ccCchHHHHHHHHHHHCCCEEEEEee
Confidence 57899999999999999999865443
No 97
>3sol_A Type II secretion pathway related protein; general secretory pathway, protein transport, pilotin; 1.90A {Escherichia coli}
Probab=25.58 E-value=33 Score=22.46 Aligned_cols=14 Identities=29% Similarity=0.518 Sum_probs=12.3
Q ss_pred HHHHHHHHhCCcEE
Q 043542 59 AARAFAEKHGWEYT 72 (99)
Q Consensus 59 ~Ai~yaek~G~~y~ 72 (99)
.||.||+.+||+-.
T Consensus 38 ~a~~~A~~~gWD~~ 51 (94)
T 3sol_A 38 VANRIAIGKGWQSL 51 (94)
T ss_dssp HHHHHHHHTTCCSC
T ss_pred HHHHHHHHcCCChh
Confidence 79999999999854
No 98
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=24.97 E-value=55 Score=20.36 Aligned_cols=18 Identities=17% Similarity=0.222 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhCCcEEEe
Q 043542 57 EAAARAFAEKHGWEYTVR 74 (99)
Q Consensus 57 ke~Ai~yaek~G~~y~V~ 74 (99)
.++|++|.+.+|+.++|.
T Consensus 80 ~~~ai~~L~~~~v~vEvl 97 (101)
T 2qrr_A 80 DSAAIEYLRENNVKVEVL 97 (101)
T ss_dssp HHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHcCCEEEEe
Confidence 478999999999999886
No 99
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=24.85 E-value=55 Score=22.48 Aligned_cols=23 Identities=13% Similarity=0.052 Sum_probs=20.4
Q ss_pred eeecCCHHHHHHHHHHhCCcEEE
Q 043542 51 GLCFDSEAAARAFAEKHGWEYTV 73 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~~y~V 73 (99)
.+.+.+.+++++.|.+.|+++++
T Consensus 6 ~~p~~~l~~~l~~~~~~G~~vEl 28 (254)
T 3ayv_A 6 AFPLSRAEEALPRLQALGLGAEV 28 (254)
T ss_dssp EEEGGGHHHHHHHHHHHTCEEEE
T ss_pred cCCHHHHHHHHHHHHhcCCCEEE
Confidence 67788999999999999999665
No 100
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrin methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP: c.90.1.1
Probab=24.74 E-value=52 Score=24.10 Aligned_cols=31 Identities=16% Similarity=0.255 Sum_probs=24.1
Q ss_pred CCCCcccccCCceeecCCHHHHHHHHHHhCCcEEEeecC
Q 043542 39 STGDPYANVGEAGLCFDSEAAARAFAEKHGWEYTVRKFH 77 (99)
Q Consensus 39 ss~D~~sqv~~~~l~F~ske~Ai~yaek~G~~y~V~~p~ 77 (99)
++|||+ -|+.--.-+.+|.++|++++|..--
T Consensus 99 ~~GDP~--------i~g~g~~l~~~l~~~gi~veviPGi 129 (280)
T 1s4d_A 99 KGGDPF--------VFGRGGEEALTLVEHQVPFRIVPGI 129 (280)
T ss_dssp ESBCTT--------SSSSHHHHHHHHHTTTCCEEEECCC
T ss_pred cCCCCc--------cccCHHHHHHHHHHCCCCEEEEcCc
Confidence 457764 4777777889999999999998643
No 101
>3cui_A EXO-beta-1,4-glucanase; CEX, xylanase, isofagomine inhibitor, TIM barrel, cellulose degradation, glycosidase, hydrolase; HET: X4S; 1.50A {Cellulomonas fimi} PDB: 3cug_A* 3cuh_A* 3cuf_A* 3cuj_A* 1fh9_A* 1fh7_A 1fh8_A 1exp_A* 1fhd_A* 1j01_A* 2exo_A 2xyl_A 2his_A*
Probab=24.56 E-value=32 Score=25.62 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=21.3
Q ss_pred eeecCCHHHHHHHHHHhCCcEEEee
Q 043542 51 GLCFDSEAAARAFAEKHGWEYTVRK 75 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~~y~V~~ 75 (99)
+..|...++.|+||+++|+......
T Consensus 57 ~~~~~~~D~~~~~a~~~gi~v~ght 81 (315)
T 3cui_A 57 SFSFGAGDRVASYAADTGKELYGHT 81 (315)
T ss_dssp BCCCHHHHHHHHHHHHHTCEEEEEE
T ss_pred cCChHHHHHHHHHHHHCCCEEEEEe
Confidence 5689999999999999999976543
No 102
>3ro8_A Endo-1,4-beta-xylanase; glycosyl hydrolase family 10, GH10, (beta/alpha)8 fold, XYLA hydrolase; 1.34A {Paenibacillus SP} PDB: 3rdk_A 4e4p_A
Probab=24.50 E-value=27 Score=27.04 Aligned_cols=22 Identities=14% Similarity=0.138 Sum_probs=20.1
Q ss_pred eeecCCHHHHHHHHHHhCCcEE
Q 043542 51 GLCFDSEAAARAFAEKHGWEYT 72 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~~y~ 72 (99)
+..|...+..|+||++||+...
T Consensus 58 ~~~f~~aD~~v~~a~~ngi~vr 79 (341)
T 3ro8_A 58 NFTFTAADAMIDKVLAEGMKMH 79 (341)
T ss_dssp BCCCHHHHHHHHHHHHTTCEEE
T ss_pred ccchHHHHHHHHHHHhCCCEEE
Confidence 5789999999999999999886
No 103
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=24.48 E-value=17 Score=22.55 Aligned_cols=19 Identities=26% Similarity=0.226 Sum_probs=14.1
Q ss_pred eeecCCHHHHHHHHHHhCC
Q 043542 51 GLCFDSEAAARAFAEKHGW 69 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~ 69 (99)
+|...|+.++|.+|.++||
T Consensus 71 Klgv~~r~~lv~~a~~~gl 89 (90)
T 3ulq_B 71 KLNVGSRTEAVLIAKSDGV 89 (90)
T ss_dssp HTTCSSHHHHHHHHTC---
T ss_pred HHCCCCHHHHHHHHHHcCC
Confidence 5677899999999999986
No 104
>1ve2_A Uroporphyrin-III C-methyltransferase; heme, biosynthesis, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: c.90.1.1
Probab=24.43 E-value=71 Score=22.41 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=24.3
Q ss_pred CCCCcccccCCceeecCCHHHHHHHHHHhCCcEEEeecC
Q 043542 39 STGDPYANVGEAGLCFDSEAAARAFAEKHGWEYTVRKFH 77 (99)
Q Consensus 39 ss~D~~sqv~~~~l~F~ske~Ai~yaek~G~~y~V~~p~ 77 (99)
.+|||. -|++--.-+..|.++|++++|..--
T Consensus 85 ~~GDP~--------i~~~~~~l~~~l~~~gi~v~viPGi 115 (235)
T 1ve2_A 85 KGGDPM--------VFGRGGEEALALRRAGIPFEVVPGV 115 (235)
T ss_dssp ESBCTT--------SSTTHHHHHHHHHHHTCCEEEECCC
T ss_pred cCCCCC--------cccCHHHHHHHHHHCCCCEEEECCH
Confidence 567764 5788888888899999999998643
No 105
>1s7i_A Hypothetical protein PA1349; structural genomics, protein structure initiative, pseudomon aeruginosa, MCSG, PSI; 1.80A {Pseudomonas aeruginosa} SCOP: d.58.4.9
Probab=24.41 E-value=31 Score=22.87 Aligned_cols=17 Identities=18% Similarity=-0.107 Sum_probs=15.4
Q ss_pred eeecCCHHHHHHHHHHh
Q 043542 51 GLCFDSEAAARAFAEKH 67 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~ 67 (99)
.|..+|+|+|++.|++.
T Consensus 89 iie~~s~deA~e~A~~~ 105 (124)
T 1s7i_A 89 LIEARDLNQALQIAAKI 105 (124)
T ss_dssp EEEESSHHHHHHHHTTC
T ss_pred EEEeCCHHHHHHHHHhC
Confidence 57899999999999875
No 106
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=24.39 E-value=62 Score=18.79 Aligned_cols=21 Identities=19% Similarity=0.153 Sum_probs=16.5
Q ss_pred eeecCCHHHHHHHHHH-hCCcE
Q 043542 51 GLCFDSEAAARAFAEK-HGWEY 71 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek-~G~~y 71 (99)
-+.|.+.|+|.+-.+. +|..+
T Consensus 61 fV~f~~~~~a~~Ai~~l~g~~~ 82 (95)
T 2ek1_A 61 MVAFESRDEATAAVIDLNDRPI 82 (95)
T ss_dssp EEEESSHHHHHHHHHHHTTCEE
T ss_pred EEEECCHHHHHHHHHHhCCCeE
Confidence 5789999999988875 66543
No 107
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=23.91 E-value=37 Score=27.57 Aligned_cols=19 Identities=16% Similarity=0.413 Sum_probs=17.4
Q ss_pred CCHHHHHHHHHHhCCcEEE
Q 043542 55 DSEAAARAFAEKHGWEYTV 73 (99)
Q Consensus 55 ~ske~Ai~yaek~G~~y~V 73 (99)
-||++-++||+++|++|..
T Consensus 166 lsK~EI~~yA~~~GIp~~~ 184 (455)
T 1k92_A 166 GGRHEMSEFMIACGFDYKM 184 (455)
T ss_dssp SSHHHHHHHHHHTTCCCCC
T ss_pred CCHHHHHHHHHHcCCCccc
Confidence 6999999999999999864
No 108
>3op6_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 2.00A {Legionella pneumophila subsp}
Probab=23.87 E-value=52 Score=21.81 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHhCCcEEEee
Q 043542 56 SEAAARAFAEKHGWEYTVRK 75 (99)
Q Consensus 56 ske~Ai~yaek~G~~y~V~~ 75 (99)
+.+.+.+|.+++|++|++.+
T Consensus 3 ~~~~v~~~L~~~~i~~~~~~ 22 (152)
T 3op6_A 3 PVKKLKQFLDSHKIKYLSIA 22 (152)
T ss_dssp HHHHHHHHHHHTTCCEEEEE
T ss_pred cHHHHHHHHHHcCCceEEEE
Confidence 35789999999999999765
No 109
>2b9s_B DNA topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani}
Probab=23.78 E-value=21 Score=21.98 Aligned_cols=19 Identities=5% Similarity=0.051 Sum_probs=14.1
Q ss_pred cCCHHHHHHHHHHhCCcEE
Q 043542 54 FDSEAAARAFAEKHGWEYT 72 (99)
Q Consensus 54 F~ske~Ai~yaek~G~~y~ 72 (99)
.-+.-=.|++|++++++.+
T Consensus 22 YlDPRItvaWcKr~~VPie 40 (62)
T 2b9s_B 22 YIDPRIICSWAKAQDVPIN 40 (62)
T ss_dssp TSCHHHHHHHHHHTTCCGG
T ss_pred ccCchhhhhhhhhcCCCHH
Confidence 3344557999999998765
No 110
>1hji_B NUN-protein; bacteriophage HK022, termination, peptide-RNA-complex, peptide-RNA-recognition; NMR {Bacteriophage HK022} SCOP: j.9.5.1
Probab=23.62 E-value=45 Score=16.89 Aligned_cols=12 Identities=33% Similarity=0.291 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhC
Q 043542 57 EAAARAFAEKHG 68 (99)
Q Consensus 57 ke~Ai~yaek~G 68 (99)
-|.-|+||-++|
T Consensus 15 wekriayalkng 26 (26)
T 1hji_B 15 WEKRIAYALKNG 26 (26)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHhcC
Confidence 467799999887
No 111
>2dep_A Xylanase B, thermostable celloxylanase; glycosidase, xylan degradation, family 10, structural genomics, NPPSFA; 1.80A {Clostridium stercorarium}
Probab=23.48 E-value=35 Score=26.21 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=21.8
Q ss_pred eeecCCHHHHHHHHHHhCCcEEEee
Q 043542 51 GLCFDSEAAARAFAEKHGWEYTVRK 75 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~~y~V~~ 75 (99)
+..|...+..|+||+++|+......
T Consensus 59 ~~~f~~~D~~v~~a~~~gi~v~ght 83 (356)
T 2dep_A 59 NFQWADADRIVQFAKENGMELRFHT 83 (356)
T ss_dssp BCCCHHHHHHHHHHHHTTCEEEEEE
T ss_pred ccCchHHHHHHHHHHHCCCEEEEee
Confidence 5789999999999999999987544
No 112
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Probab=23.17 E-value=51 Score=24.40 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=16.4
Q ss_pred cCCHHHHHHHHHHhCCcEEE
Q 043542 54 FDSEAAARAFAEKHGWEYTV 73 (99)
Q Consensus 54 F~ske~Ai~yaek~G~~y~V 73 (99)
-..++++++||++||+...-
T Consensus 182 mar~~~l~~fA~~h~l~~it 201 (217)
T 1g57_A 182 MARAPECIEFANKHNMALVT 201 (217)
T ss_dssp BCCHHHHHHHHHHTTCEEEE
T ss_pred ccCHHHHHHHHHHcCCCEEE
Confidence 35789999999999997753
No 113
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=23.09 E-value=70 Score=18.14 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=16.6
Q ss_pred ceeecCCHHHHHHHHHH-hCCc
Q 043542 50 AGLCFDSEAAARAFAEK-HGWE 70 (99)
Q Consensus 50 ~~l~F~ske~Ai~yaek-~G~~ 70 (99)
.-+.|.+.++|.+-++. +|..
T Consensus 50 afV~f~~~~~a~~A~~~l~g~~ 71 (88)
T 4a8x_A 50 AYVEFENPDEAEKALKHMDGGQ 71 (88)
T ss_dssp EEEEESSHHHHHHHHHHHTTCE
T ss_pred EEEEEecHHHHHHHHHHcCCCe
Confidence 36799999999988875 6654
No 114
>1wde_A Probable diphthine synthase; structural genomics, conserved hypothetical protein, riken S genomics/proteomics initiative, RSGI, transferase; 2.00A {Aeropyrum pernix} SCOP: c.90.1.1
Probab=23.04 E-value=63 Score=23.82 Aligned_cols=32 Identities=19% Similarity=0.107 Sum_probs=24.9
Q ss_pred cCCCCCcccccCCceeecCCHHHHHHHHHHhCCcEEEeec
Q 043542 37 WTSTGDPYANVGEAGLCFDSEAAARAFAEKHGWEYTVRKF 76 (99)
Q Consensus 37 Wtss~D~~sqv~~~~l~F~ske~Ai~yaek~G~~y~V~~p 76 (99)
--++|||+ .|.+--.=+..|.++|++++|..-
T Consensus 88 ~L~~GDP~--------v~g~~~~l~~~l~~~gi~veviPG 119 (294)
T 1wde_A 88 VVTAGDPM--------VATTHSSLAAEALEAGVAVRYIPG 119 (294)
T ss_dssp EEESBCTT--------SSSSHHHHHHHHHHTTCEEEEECC
T ss_pred EEeCCCCc--------cccCHHHHHHHHHHCCCCEEEECC
Confidence 34568885 477777778899999999999854
No 115
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=22.99 E-value=43 Score=22.52 Aligned_cols=20 Identities=10% Similarity=-0.074 Sum_probs=17.8
Q ss_pred eeecCCHHHHHHHHHHhCCc
Q 043542 51 GLCFDSEAAARAFAEKHGWE 70 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~~ 70 (99)
+|...++-+++.||.++|+-
T Consensus 201 KL~~~~~~~l~~~a~~~~~~ 220 (225)
T 3klo_A 201 KINAKNRLQALIWAKNNIGI 220 (225)
T ss_dssp TSCCSSHHHHHHHHHHHCCC
T ss_pred HhCCCCHHHHHHHHHHhccc
Confidence 67889999999999999864
No 116
>1xyz_A 1,4-beta-D-xylan-xylanohydrolase; glycosyl hydrolase, xylanase, family F/10 of glycosyl hydrolases, glycosyltransferase; 1.40A {Clostridium thermocellum} SCOP: c.1.8.3
Probab=22.94 E-value=36 Score=25.95 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=21.3
Q ss_pred eeecCCHHHHHHHHHHhCCcEEEee
Q 043542 51 GLCFDSEAAARAFAEKHGWEYTVRK 75 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~~y~V~~ 75 (99)
+..|...++.|+||++||+......
T Consensus 83 ~~~f~~~D~~v~~a~~~gi~v~ght 107 (347)
T 1xyz_A 83 VFDFSKGDQLLAFAERNGMQMRGHT 107 (347)
T ss_dssp BCCCHHHHHHHHHHHHTTCEEEEEE
T ss_pred cCChHHHHHHHHHHHHCCCEEEEEe
Confidence 5679999999999999999986443
No 117
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=22.80 E-value=53 Score=22.92 Aligned_cols=18 Identities=11% Similarity=-0.056 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHhCCcEE
Q 043542 55 DSEAAARAFAEKHGWEYT 72 (99)
Q Consensus 55 ~ske~Ai~yaek~G~~y~ 72 (99)
-+.++|..||+++|+.|.
T Consensus 136 V~~~e~~~~a~~~~~~~~ 153 (216)
T 4dkx_A 136 VSIEEGERKAKELNVMFI 153 (216)
T ss_dssp SCHHHHHHHHHHHTCEEE
T ss_pred ccHHHHhhHHHHhCCeeE
Confidence 378999999999999875
No 118
>4f8x_A Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET: NAG BMA; 1.47A {Penicillium canescens}
Probab=22.48 E-value=35 Score=26.34 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=20.7
Q ss_pred eeecCCHHHHHHHHHHhCCcEEE
Q 043542 51 GLCFDSEAAARAFAEKHGWEYTV 73 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~~y~V 73 (99)
+..|...+..|+||++||+...-
T Consensus 61 ~~~f~~aD~~v~~a~~~gi~vrG 83 (335)
T 4f8x_A 61 VFNFTEGEQFLEVAERFGSKVRC 83 (335)
T ss_dssp EECCHHHHHHHHHHHHTTCEEEE
T ss_pred ccCcchhHHHHHHHHHCCCEEEE
Confidence 67899999999999999998764
No 119
>1n82_A Xylanase, intra-cellular xylanase; hydrolase; 1.45A {Geobacillus stearothermophilus} SCOP: c.1.8.3 PDB: 3mua_A* 2q8x_A* 3msd_A* 3msg_A* 3mui_A* 3ms8_A
Probab=22.45 E-value=38 Score=25.58 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=21.6
Q ss_pred eeecCCHHHHHHHHHHhCCcEEEee
Q 043542 51 GLCFDSEAAARAFAEKHGWEYTVRK 75 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~~y~V~~ 75 (99)
+..|...+..|+||++||+......
T Consensus 58 ~~~f~~~D~~v~~a~~~gi~v~ght 82 (331)
T 1n82_A 58 KFTFQEADRIVDFACSHRMAVRGHT 82 (331)
T ss_dssp BCCCHHHHHHHHHHHHTTCEEEEEE
T ss_pred ccChHHHHHHHHHHHHCCCEEEEEe
Confidence 5789999999999999999986543
No 120
>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}
Probab=22.40 E-value=46 Score=22.76 Aligned_cols=18 Identities=17% Similarity=0.110 Sum_probs=14.3
Q ss_pred cCCHHHHHHHHHHhCCcE
Q 043542 54 FDSEAAARAFAEKHGWEY 71 (99)
Q Consensus 54 F~ske~Ai~yaek~G~~y 71 (99)
|.-.+...+||+++|+.-
T Consensus 134 ~~~~~~~~~~~~~~g~~~ 151 (159)
T 3ebr_A 134 KTSMDRYLNYCKAHGIRP 151 (159)
T ss_dssp HHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHcCCCc
Confidence 455678889999999863
No 121
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=22.25 E-value=61 Score=20.95 Aligned_cols=20 Identities=20% Similarity=0.400 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhCCcEEEeec
Q 043542 57 EAAARAFAEKHGWEYTVRKF 76 (99)
Q Consensus 57 ke~Ai~yaek~G~~y~V~~p 76 (99)
--.|.++.+.+|++|++..-
T Consensus 16 c~ka~~~L~~~gi~~~~~di 35 (120)
T 3fz4_A 16 CRRAKAELDDLAWDYDAIDI 35 (120)
T ss_dssp HHHHHHHHHHHTCCEEEEET
T ss_pred HHHHHHHHHHcCCceEEEEe
Confidence 46799999999999997754
No 122
>1w32_A Endo-1,4-beta-xylanase A precursor; mutant, calcium ION, thermostable, glycosyle hydrolase, family 10, error prone PCR, hydrolase; 1.2A {Cellvibrio japonicus} SCOP: c.1.8.3 PDB: 1w2p_A 1w2v_A 1w3h_A 1clx_A 1e5n_A* 1xys_A
Probab=22.15 E-value=41 Score=25.78 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=20.3
Q ss_pred eecCCHHHHHHHHHHhCCcEEEe
Q 043542 52 LCFDSEAAARAFAEKHGWEYTVR 74 (99)
Q Consensus 52 l~F~ske~Ai~yaek~G~~y~V~ 74 (99)
..|...++.|+||++||+.....
T Consensus 58 ~~f~~~D~~v~~a~~~gi~v~gh 80 (348)
T 1w32_A 58 FSFTNSDRLVSWAAQNGQTVHGH 80 (348)
T ss_dssp ECCHHHHHHHHHHHHTTCEEEEE
T ss_pred CCchHHHHHHHHHHHCCCEEEEE
Confidence 57899999999999999998744
No 123
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=22.13 E-value=35 Score=21.53 Aligned_cols=19 Identities=16% Similarity=0.157 Sum_probs=16.8
Q ss_pred eeecCCHHHHHHHHHHhCC
Q 043542 51 GLCFDSEAAARAFAEKHGW 69 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~ 69 (99)
+|...++.++|.+|.++||
T Consensus 76 KLgv~~r~elv~~a~~~gl 94 (99)
T 1p4w_A 76 KLGVDNDIALLNYLSSVSM 94 (99)
T ss_dssp HHTCSSHHHHHHHHHHHTC
T ss_pred HHCCCCHHHHHHHHHHcCC
Confidence 5667899999999999997
No 124
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=21.95 E-value=62 Score=20.07 Aligned_cols=19 Identities=26% Similarity=-0.108 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHhCCcEEEe
Q 043542 56 SEAAARAFAEKHGWEYTVR 74 (99)
Q Consensus 56 ske~Ai~yaek~G~~y~V~ 74 (99)
..++|++|.+.+|+.++|.
T Consensus 79 ~~~~ai~~L~~~~v~vEvl 97 (100)
T 2qsw_A 79 NILAAIEGLRKLRVETEVI 97 (100)
T ss_dssp HHHHHHHHHHHTTCEEEES
T ss_pred HHHHHHHHHHHcCCEEEEc
Confidence 3678999999999998876
No 125
>1nq6_A XYS1; glycoside hydrolase family 10, xylanase, xylan degradation,, hydrolase; 1.78A {Streptomyces halstedii} SCOP: c.1.8.3
Probab=21.93 E-value=32 Score=25.38 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=20.4
Q ss_pred eeecCCHHHHHHHHHHhCCcEEE
Q 043542 51 GLCFDSEAAARAFAEKHGWEYTV 73 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~~y~V 73 (99)
+..|...++.|++|++||+....
T Consensus 57 ~~~~~~~D~~v~~a~~~gi~v~g 79 (302)
T 1nq6_A 57 SFSFSAADRIVSHAQSKGMKVRG 79 (302)
T ss_dssp BCCCHHHHHHHHHHHHHTCEEEE
T ss_pred cCCcHHHHHHHHHHHHCCCEEEE
Confidence 56888999999999999999863
No 126
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=21.92 E-value=79 Score=17.74 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=16.7
Q ss_pred eeecCCHHHHHHHHHH-hCCcE
Q 043542 51 GLCFDSEAAARAFAEK-HGWEY 71 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek-~G~~y 71 (99)
-+.|.+.++|.+-.+. +|..+
T Consensus 47 fV~f~~~~~a~~a~~~l~g~~~ 68 (83)
T 3md1_A 47 FVSFTSQDDAQNAMDSMQGQDL 68 (83)
T ss_dssp EEEESCHHHHHHHHHHHTTCEE
T ss_pred EEEECCHHHHHHHHHHhcCCee
Confidence 6789999999988875 66543
No 127
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=21.64 E-value=78 Score=19.92 Aligned_cols=20 Identities=20% Similarity=0.461 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhCCcEEEeec
Q 043542 57 EAAARAFAEKHGWEYTVRKF 76 (99)
Q Consensus 57 ke~Ai~yaek~G~~y~V~~p 76 (99)
=..|.++.+.+|++|++..-
T Consensus 13 C~kak~~L~~~gi~~~~~di 32 (114)
T 1rw1_A 13 MKKARTWLDEHKVAYDFHDY 32 (114)
T ss_dssp HHHHHHHHHHTTCCEEEEEH
T ss_pred HHHHHHHHHHCCCceEEEee
Confidence 35799999999999987653
No 128
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=21.46 E-value=75 Score=18.92 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=16.1
Q ss_pred eeecCCHHHHHHHHHH-hCCc
Q 043542 51 GLCFDSEAAARAFAEK-HGWE 70 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek-~G~~ 70 (99)
-+.|.+.|+|.+-.+. +|..
T Consensus 74 fV~f~~~~~a~~A~~~l~g~~ 94 (107)
T 3ulh_A 74 DVHFERKADALKAMKQYNGVP 94 (107)
T ss_dssp EEEESSHHHHHHHHHHHTTCE
T ss_pred EEEECCHHHHHHHHHHhCCCE
Confidence 5789999999988775 6654
No 129
>2d1z_A Endo-1,4-beta-D-xylanase; TIM-barrel, retaining enzyme, catalytic-site mutant, chemica hydrolase; 1.60A {Streptomyces olivaceoviridis} PDB: 2d20_A* 2d22_A 2d23_A 2d24_A* 1xyf_A 1isw_A* 1isx_A* 1isy_A* 1isv_A* 1it0_A* 1v6u_A* 1v6v_A* 1v6w_A* 1v6x_A* 1isz_A
Probab=21.42 E-value=40 Score=26.19 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=22.2
Q ss_pred eeecCCHHHHHHHHHHhCCcEEEeec
Q 043542 51 GLCFDSEAAARAFAEKHGWEYTVRKF 76 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~~y~V~~p 76 (99)
+..|...++.|+||++||+......+
T Consensus 58 ~~~f~~~D~~~~~a~~~gi~v~ghtl 83 (436)
T 2d1z_A 58 QFNFSAGDRVYNWAVQNGKQVRGHTL 83 (436)
T ss_dssp BCCCHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ccChHHHHHHHHHHHHCCCEEEEEEE
Confidence 57899999999999999999865544
No 130
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}
Probab=21.10 E-value=79 Score=20.09 Aligned_cols=21 Identities=33% Similarity=0.661 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHhCCcEEEeec
Q 043542 56 SEAAARAFAEKHGWEYTVRKF 76 (99)
Q Consensus 56 ske~Ai~yaek~G~~y~V~~p 76 (99)
+=..|.++.+.+|++|++..-
T Consensus 17 ~C~ka~~~L~~~gi~y~~~di 37 (120)
T 2kok_A 17 TMKKARIWLEDHGIDYTFHDY 37 (120)
T ss_dssp HHHHHHHHHHHHTCCEEEEEH
T ss_pred HHHHHHHHHHHcCCcEEEEee
Confidence 347899999999999987653
No 131
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=21.09 E-value=81 Score=17.87 Aligned_cols=19 Identities=16% Similarity=0.046 Sum_probs=15.6
Q ss_pred eeecCCHHHHHHHHHH-hCC
Q 043542 51 GLCFDSEAAARAFAEK-HGW 69 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek-~G~ 69 (99)
-+.|.|.++|..-.+. +|.
T Consensus 52 fV~f~~~~~A~~A~~~l~g~ 71 (87)
T 3bs9_A 52 FVSFFNKWDAENAIQQMGGQ 71 (87)
T ss_dssp EEEESSHHHHHHHHHHHTTC
T ss_pred EEEECCHHHHHHHHHHcCCC
Confidence 5789999999988875 664
No 132
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=20.89 E-value=42 Score=18.72 Aligned_cols=19 Identities=16% Similarity=-0.006 Sum_probs=16.1
Q ss_pred eeecCCHHHHHHHHHHhCC
Q 043542 51 GLCFDSEAAARAFAEKHGW 69 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~ 69 (99)
+|.-.++.+++.+|.++|+
T Consensus 53 kl~~~~~~~~~~~~~~~g~ 71 (74)
T 1fse_A 53 KLGVKGRSQAVVELLRMGE 71 (74)
T ss_dssp HHTCSSHHHHHHHHHHTTS
T ss_pred HHCCCCHHHHHHHHHHhCC
Confidence 4566789999999999996
No 133
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.82 E-value=82 Score=19.00 Aligned_cols=22 Identities=23% Similarity=0.435 Sum_probs=17.0
Q ss_pred ceeecCCHHHHHHHHHH-hCCcE
Q 043542 50 AGLCFDSEAAARAFAEK-HGWEY 71 (99)
Q Consensus 50 ~~l~F~ske~Ai~yaek-~G~~y 71 (99)
.-+.|.+.|+|..-.+. +|..+
T Consensus 68 afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 68 ATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp EEEEBSSHHHHHHHHHHHTTCEE
T ss_pred EEEEECCHHHHHHHHHHcCCCcc
Confidence 36899999999988875 66543
No 134
>2afp_A Protein (SEA raven type II antifreeze protein); recombinant SEA raven protein, solution backbone fold, C- type lectin; NMR {Hemitripterus americanus} SCOP: d.169.1.1
Probab=20.79 E-value=81 Score=19.20 Aligned_cols=35 Identities=23% Similarity=0.193 Sum_probs=21.5
Q ss_pred cCcCCCCCcccccCCceeecCCHHHHHHHHHHhCCcEE
Q 043542 35 MGWTSTGDPYANVGEAGLCFDSEAAARAFAEKHGWEYT 72 (99)
Q Consensus 35 MGWtss~D~~sqv~~~~l~F~ske~Ai~yaek~G~~y~ 72 (99)
.||+.-++.--.+. ..-.|-++|..+|+.+|=...
T Consensus 9 ~gw~~~~~~CY~~~---~~~~~w~~A~~~C~~~g~~La 43 (129)
T 2afp_A 9 AGWQPLGDRCIYYE---TTAMTWALAETNCMKLGGHLA 43 (129)
T ss_dssp SSSCCCSSSEECCC---CSCCCHHHHHHHHHHHSCEEC
T ss_pred cCcEEcCCEEEEEE---CCcCCHHHHHHHHHHcCCEEC
Confidence 46776665422221 112578899999999885443
No 135
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=20.79 E-value=39 Score=22.39 Aligned_cols=19 Identities=11% Similarity=0.163 Sum_probs=16.5
Q ss_pred eeecCCHHHHHHHHHHhCC
Q 043542 51 GLCFDSEAAARAFAEKHGW 69 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~ 69 (99)
+|...++-+|+.+|.++|+
T Consensus 196 Kl~~~~r~~l~~~a~~~g~ 214 (215)
T 1a04_A 196 KMKLKSRVEAAVWVHQERI 214 (215)
T ss_dssp HHTCCSHHHHHHHHHHHTC
T ss_pred HcCCCCHHHHHHHHHHcCC
Confidence 5667899999999999986
No 136
>3niy_A Endo-1,4-beta-xylanase; TIM-barrel, hydrolase; 1.58A {Thermotoga petrophila rku-1} SCOP: c.1.8.3 PDB: 3nj3_A* 1vbr_A* 1vbu_A
Probab=20.51 E-value=53 Score=25.29 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=20.8
Q ss_pred eeecCCHHHHHHHHHHhCCcEEE
Q 043542 51 GLCFDSEAAARAFAEKHGWEYTV 73 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~~y~V 73 (99)
+..|...+..|+||+++|+....
T Consensus 78 ~~~f~~~D~~v~~a~~~gi~vrg 100 (341)
T 3niy_A 78 RYNFTPAEKHVEFAEENNMIVHG 100 (341)
T ss_dssp EEECHHHHHHHHHHHHTTCEEEE
T ss_pred ccChHHHHHHHHHHHHCCCeEEe
Confidence 67899999999999999999864
No 137
>2k89_A PLA2P, PLAP, phospholipase A-2-activating protein; ubiquitin binding, WD repeat, protein binding; NMR {Homo sapiens} PDB: 2k8a_A 2k8b_B 2k8c_B
Probab=20.46 E-value=53 Score=20.88 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=15.0
Q ss_pred eeecCC----HHHHHHHHHHhCCc
Q 043542 51 GLCFDS----EAAARAFAEKHGWE 70 (99)
Q Consensus 51 ~l~F~s----ke~Ai~yaek~G~~ 70 (99)
.|-|.- -++|-.||++|+++
T Consensus 32 kLpyN~~dnP~~aAqkFi~~n~Lp 55 (80)
T 2k89_A 32 KLPYNTSDDPWLTAYNFLQKNDLN 55 (80)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTCC
T ss_pred ccCccCCCCHHHHHHHHHHHcCCC
Confidence 455543 46899999999986
No 138
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=20.37 E-value=72 Score=20.43 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhCCcEEEeec
Q 043542 57 EAAARAFAEKHGWEYTVRKF 76 (99)
Q Consensus 57 ke~Ai~yaek~G~~y~V~~p 76 (99)
-..|.++.+.+|++|++.+-
T Consensus 13 c~ka~~~L~~~gi~~~~~di 32 (120)
T 3l78_A 13 CRKARAWLNRHDVVFQEHNI 32 (120)
T ss_dssp HHHHHHHHHHTTCCEEEEET
T ss_pred HHHHHHHHHHcCCCeEEEec
Confidence 35789999999999998764
No 139
>3g12_A Putative lactoylglutathione lyase; glyoxalase, bleomycin resistance, PSI-2, NYSGXRC, structural genomics; 2.58A {Bdellovibrio bacteriovorus HD100}
Probab=20.32 E-value=79 Score=19.46 Aligned_cols=27 Identities=7% Similarity=-0.146 Sum_probs=22.4
Q ss_pred eeecCCHHHHHHHHHHhCCcEEEeecC
Q 043542 51 GLCFDSEAAARAFAEKHGWEYTVRKFH 77 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~~y~V~~p~ 77 (99)
.+.-++.+++++-+++.|..+.+.+|.
T Consensus 71 ~f~v~dvd~~~~~l~~~G~~~~~~~p~ 97 (128)
T 3g12_A 71 GFQITDLEKTVQELVKIPGAMCILDPT 97 (128)
T ss_dssp EEEESCHHHHHHHHTTSTTCEEEEEEE
T ss_pred EEEeCCHHHHHHHHHHCCCceeccCce
Confidence 677789999999999999996555554
No 140
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}
Probab=20.32 E-value=85 Score=20.73 Aligned_cols=27 Identities=15% Similarity=0.033 Sum_probs=22.3
Q ss_pred eeecCCHHHHHHHHHHhCC--cEEEeecC
Q 043542 51 GLCFDSEAAARAFAEKHGW--EYTVRKFH 77 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~--~y~V~~p~ 77 (99)
-+..++.+++.+|++++|+ .|.+....
T Consensus 84 ~Is~d~~~~~~~~~~~~~~~~~fp~l~D~ 112 (171)
T 2pwj_A 84 CVAINDPYTVNAWAEKIQAKDAIEFYGDF 112 (171)
T ss_dssp EEESSCHHHHHHHHHHTTCTTTSEEEECT
T ss_pred EEeCCCHHHHHHHHHHhCCCCceEEEECC
Confidence 5778999999999999996 68876543
No 141
>3emz_A Xylanase, endo-1,4-beta-xylanase; (alpha/beta)8 barrel, GH10 enzyme complex, hydrolase; HET: HXH; 2.08A {Bacillus SP} SCOP: c.1.8.3 PDB: 3emq_A* 3emc_A*
Probab=20.30 E-value=32 Score=26.43 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=21.2
Q ss_pred eeecCCHHHHHHHHHHhCCcEEEe
Q 043542 51 GLCFDSEAAARAFAEKHGWEYTVR 74 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~~y~V~ 74 (99)
+..|...++.|+||++||+.....
T Consensus 57 ~~~f~~~D~~v~~a~~~gi~vrgH 80 (331)
T 3emz_A 57 EYTFEAADEIVDFAVARGIGVRGH 80 (331)
T ss_dssp BCCCHHHHHHHHHHHTTTCEEEEC
T ss_pred ccChhHHHHHHHHHHHCCCEEeee
Confidence 568999999999999999998754
No 142
>3u7b_A Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET: NAG BMA MAN; 1.94A {Fusarium oxysporum}
Probab=20.29 E-value=32 Score=26.34 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.4
Q ss_pred eeecCCHHHHHHHHHHhCCcEEE
Q 043542 51 GLCFDSEAAARAFAEKHGWEYTV 73 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~~y~V 73 (99)
+..|...+..|+||++||+...-
T Consensus 59 ~~~f~~~D~~v~~a~~~gi~vrG 81 (327)
T 3u7b_A 59 QFNWGPADQHAAAATSRGYELRC 81 (327)
T ss_dssp BCCCHHHHHHHHHHHTTTCEEEE
T ss_pred ccChHHHHHHHHHHHHCCCEEEE
Confidence 56899999999999999999864
No 143
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=20.27 E-value=84 Score=18.25 Aligned_cols=21 Identities=14% Similarity=0.294 Sum_probs=16.6
Q ss_pred eeecCCHHHHHHHHHH-hCCcE
Q 043542 51 GLCFDSEAAARAFAEK-HGWEY 71 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek-~G~~y 71 (99)
-+.|.+.++|..-.+. +|..+
T Consensus 55 fV~f~~~~~A~~A~~~l~g~~~ 76 (97)
T 1nu4_A 55 FVIFKEVSSATNALRSMQGFPF 76 (97)
T ss_dssp EEEESSHHHHHHHHHHHTTCEE
T ss_pred EEEeCCHHHHHHHHHHhCCCEE
Confidence 5789999999988875 67543
No 144
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}
Probab=20.08 E-value=82 Score=21.44 Aligned_cols=27 Identities=11% Similarity=-0.027 Sum_probs=23.3
Q ss_pred eeecCCHHHHHHHHHHhCCc--EEEeecC
Q 043542 51 GLCFDSEAAARAFAEKHGWE--YTVRKFH 77 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~~--y~V~~p~ 77 (99)
-+.-++.++..+|++++|+. |.+....
T Consensus 97 ~Is~d~~~~~~~f~~~~~~~~~fp~l~D~ 125 (184)
T 3uma_A 97 VVAVNDLHVMGAWATHSGGMGKIHFLSDW 125 (184)
T ss_dssp EEESSCHHHHHHHHHHHTCTTTSEEEECT
T ss_pred EEECCCHHHHHHHHHHhCCCCceEEEEcC
Confidence 57789999999999999999 8877654
No 145
>1ur1_A Endoxylanase; hydrolase, family 10, glycoside hydrolase, hemicellulose, xylan degradation; HET: XYS AHR; 1.43A {Cellvibrio mixtus} SCOP: c.1.8.3 PDB: 1uqy_A* 1uqz_A* 1ur2_A* 2cnc_A*
Probab=20.05 E-value=38 Score=26.42 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=21.6
Q ss_pred eeecCCHHHHHHHHHHhCCcEEEee
Q 043542 51 GLCFDSEAAARAFAEKHGWEYTVRK 75 (99)
Q Consensus 51 ~l~F~ske~Ai~yaek~G~~y~V~~ 75 (99)
+..|...+..|+||++||+......
T Consensus 81 ~~~f~~~D~~v~~a~~~gi~vrgHt 105 (378)
T 1ur1_A 81 QWNWKDADAFVAFGTKHNLHMVGHT 105 (378)
T ss_dssp CBCCHHHHHHHHHHHHTTCEEEEEE
T ss_pred ccCchHHHHHHHHHHHCCCEEEeec
Confidence 5789999999999999999986443
Done!