Query 043543
Match_columns 381
No_of_seqs 150 out of 364
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 06:03:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043543.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043543hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10250 O-FucT: GDP-fucose pr 100.0 2.3E-53 5E-58 413.7 -4.1 282 1-301 20-345 (351)
2 PF05830 NodZ: Nodulation prot 94.5 0.17 3.6E-06 51.0 8.4 158 85-290 122-290 (321)
3 KOG3849 GDP-fucose protein O-f 90.9 0.53 1.2E-05 47.1 6.2 176 84-300 184-369 (386)
4 KOG3705 Glycoprotein 6-alpha-L 67.5 35 0.00076 36.2 9.3 145 117-310 340-493 (580)
5 PF14771 DUF4476: Domain of un 63.0 3.8 8.3E-05 33.6 1.2 36 198-248 39-74 (95)
6 PLN02232 ubiquinone biosynthes 55.9 20 0.00043 31.9 4.6 98 113-225 49-152 (160)
7 PF00799 Gemini_AL1: Geminivir 47.1 21 0.00046 31.1 3.2 29 196-225 14-42 (114)
8 COG0859 RfaF ADP-heptose:LPS h 47.0 26 0.00056 34.9 4.3 71 202-292 198-268 (334)
9 PF10892 DUF2688: Protein of u 41.7 20 0.00043 28.0 1.9 16 195-211 42-57 (60)
10 PRK15451 tRNA cmo(5)U34 methyl 39.1 43 0.00092 31.8 4.3 27 194-220 204-230 (247)
11 PF02845 CUE: CUE domain; Int 37.7 14 0.00031 26.0 0.6 34 233-273 5-40 (42)
12 smart00874 B5 tRNA synthetase 34.8 33 0.00071 26.2 2.3 24 191-215 12-35 (71)
13 PF06180 CbiK: Cobalt chelatas 30.5 1.1E+02 0.0024 30.2 5.7 111 192-307 51-205 (262)
14 PRK10556 hypothetical protein; 27.7 37 0.0008 29.3 1.6 19 199-217 3-21 (111)
15 PF03484 B5: tRNA synthetase B 26.9 37 0.00081 26.4 1.4 25 191-216 12-36 (70)
16 PLN02746 hydroxymethylglutaryl 26.7 4.9E+02 0.011 26.8 9.7 51 159-215 248-306 (347)
17 PF09400 DUF2002: Protein of u 24.5 36 0.00077 29.6 0.9 19 199-217 3-21 (111)
18 PF00036 EF-hand_1: EF hand; 24.5 36 0.00079 22.3 0.8 26 309-335 3-28 (29)
19 PF13756 Stimulus_sens_1: Stim 23.2 96 0.0021 26.5 3.4 33 199-231 1-35 (112)
20 PF08924 DUF1906: Domain of un 22.3 95 0.0021 27.4 3.2 22 203-224 81-102 (136)
21 TIGR01354 cyt_deam_tetra cytid 22.1 98 0.0021 26.9 3.2 47 199-249 80-127 (127)
22 PRK05578 cytidine deaminase; V 21.3 95 0.0021 27.5 3.0 48 199-250 83-131 (131)
23 KOG0572 Glutamine phosphoribos 20.3 1.6E+02 0.0035 31.3 4.8 68 127-225 371-438 (474)
24 cd06418 GH25_BacA-like BacA is 20.0 1.1E+02 0.0024 29.0 3.4 23 203-225 93-115 (212)
No 1
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=100.00 E-value=2.3e-53 Score=413.70 Aligned_cols=282 Identities=40% Similarity=0.633 Sum_probs=194.9
Q ss_pred CEeeeecccceEeccccCCCCccCCCCC-----CCCCcChHHHHHhccCCeEEeccCChhhcCCcc--------------
Q 043543 1 MVAVAHIMNATLVIPQLDKRSFWKDSST-----FSDMFDEVHFIKTLRGDLRIAKELPKELESVPR-------------- 61 (381)
Q Consensus 1 aV~vAR~LNATLVlP~l~~~s~w~D~S~-----F~dIfD~d~Fi~~L~~dVrIvk~LP~~~~~~~~-------------- 61 (381)
||++|++||+|||||.+...+.|++.++ |+++||+++|++.++.+|.+.+.+|..+.....
T Consensus 20 a~~~A~~LnRTLVLPp~~~~~~~~~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~~~~~~~~~~~~~~~~~~~~~~~ 99 (351)
T PF10250_consen 20 AVVFAKALNRTLVLPPFIKHYHWKDQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLPKHWDEVFRLQYCWSPWESGSWD 99 (351)
T ss_dssp HHHHHHHHT-EEE--EEEEESSSS----EEEEEHHHHB-HHHHTTTS--EE-HHHHHHHHS-GGG-EEEESS-B------
T ss_pred HHHHHHHhCCEEEcCCccccccccccccccccChhhhccHHHHHHHhhCceehheeccchhccccchhhcccccccccch
Confidence 5789999999999999999999999988 999999999999999999999999876654211
Q ss_pred -----------------ccccccc-cccchhh-HHhHHHhhhc------cEEEEeecCCccccCCCChhHHHHhhhhhcc
Q 043543 62 -----------------ARKHFTS-WSGVGYY-EEMTQLFKEY------QVIHVAKSDSRLANNDLPLDIQRLRCRALYY 116 (381)
Q Consensus 62 -----------------~~~~p~~-~s~~~yy-~~ilp~l~k~------~Vi~l~~~~~rla~~~lp~~iq~LRCr~nf~ 116 (381)
....+.. |+...+| ++++|.+.++ +|+.|.++...+..+.++.++|+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~r-------- 171 (351)
T PF10250_consen 100 DNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNYLDRDLQR-------- 171 (351)
T ss_dssp --TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--GGGGGGGG--------
T ss_pred hhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccchhcccCccceE--------
Confidence 1112223 7888888 7799999987 99999999999998888999987
Q ss_pred cccccchHHHHHHHHHHHHHhcCCCeEEEeccchhhhHhhhcCCCCCChhHHHHHHHHHhhccccccccCCchhhhcCCC
Q 043543 117 ALRFSPPIEILGEKLVERLRSLGGRYIALHLRYEKDMLSFTGCTYGLTDAESKELTIMRENTNHWKVKKINSTEQRIGGY 196 (381)
Q Consensus 117 ALrF~p~I~~lg~~lV~Rlr~~g~pfiAlHLR~E~Dmla~sgC~~g~~~~e~~eL~~~R~~~~~w~~k~i~~~~~R~~G~ 196 (381)
+|+|+++|+++|++++++|...++||||+|||+|+|| +++|.+++ +...|+.+|. |..+.+++...+..+.
T Consensus 172 ~l~~~~~i~~~a~~~i~~~~~~~~~yiavHlR~~~D~--~~~C~~~~---~~~~~~~~~~----~~~~~~~~~~~~~~~~ 242 (351)
T PF10250_consen 172 YLRFSPEIRELADKFIKRLLAGGGPYIAVHLRRGKDW--FSACEFKG---ERHLLASPRC----WGKKSINPEKKRRNGC 242 (351)
T ss_dssp G--B-HHHHHHHHHHHHHH----SSEEEEEE--SHHH--HHHHCT-T-------TTTHHH----H-GGGTT-----HHHH
T ss_pred EEecCHHHHHHHHHHHHHhhcccCceEEEeecccCch--HhhcccCC---chHHHHHhHh----hccccccchhhhhcCC
Confidence 9999999999999999999955569999999999999 88999955 7777887775 2445577778899999
Q ss_pred CCCCHHHHHHHHHHhCCCCCcEEEEeeccccCCcccchHHHHhCCCcccccccCCHHHHHHHHhhhhhhhhhhheecccC
Q 043543 197 CPLTPKEVGIFLQALGYPPSTIIYIAAGEIYGGNTHLSELMYRFPNLVFKETLATKEELKAFANHASQTAALDYLISVES 276 (381)
Q Consensus 197 CPLtPeEvgl~LralGf~~~T~IYlA~g~iygg~~~l~~L~~~fP~l~tKe~L~~~~eL~~f~~~s~~~aAlDy~V~~~S 276 (381)
||++|++++.+++++|+.+.|.||||+++++||.+.|++|++.||++++|+++.+.+|+++|.+ .++|+||++||++|
T Consensus 243 ~p~~~~~~~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~vD~~i~~~s 320 (351)
T PF10250_consen 243 CPSTPQEAKQILRALGKNNTTVVYIATDEIYGGERRLDPLKNMFPNVVTKDDLLSHEELEPLND--DQLAMVDQEICSRS 320 (351)
T ss_dssp S--HHHHHHHHHHHHHHHT-SEEEEEESS-----------HHHHHHHHGGGT--EE--S-------S--HHHHHHHHHHS
T ss_pred CCChHHHHHHHHHHhccCCCCEEEEecCcccccchhHHHHHHHhhhhEeccccCCHHHhhhccc--cchhHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999966 99999999999999
Q ss_pred ceeeeCCCCchhHhHhHhhhhcCCC
Q 043543 277 DVFIPSHSGNMARAVEGHRRFLGHR 301 (381)
Q Consensus 277 DvFv~t~~Gnf~~~v~GhR~y~G~~ 301 (381)
|+||+|..++|+.+|+++|.|.|+.
T Consensus 321 ~~Figt~~Stfs~~i~~~R~~~g~~ 345 (351)
T PF10250_consen 321 DVFIGTCGSTFSSNIARERHYRGKP 345 (351)
T ss_dssp SEEEE-TT-HHHHHHHHHHHHSSSS
T ss_pred CEEEecCcchhHHHhhcccCcCCCC
Confidence 9999999999999999999999965
No 2
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=94.51 E-value=0.17 Score=51.04 Aligned_cols=158 Identities=16% Similarity=0.234 Sum_probs=80.8
Q ss_pred ccEEEEeecCCccccCCCChhHHHHhhhhhcccccccchHHHHHHHHHHHHHhcCCCeEEEeccch--hhhHhhhcCCCC
Q 043543 85 YQVIHVAKSDSRLANNDLPLDIQRLRCRALYYALRFSPPIEILGEKLVERLRSLGGRYIALHLRYE--KDMLSFTGCTYG 162 (381)
Q Consensus 85 ~~Vi~l~~~~~rla~~~lp~~iq~LRCr~nf~ALrF~p~I~~lg~~lV~Rlr~~g~pfiAlHLR~E--~Dmla~sgC~~g 162 (381)
.-||+..=..-+... +..|| -|..|+-+++|++..+.+...-= .|.+=|++|-|.= +|.+.+ +
T Consensus 122 ~~vv~d~c~~~~c~~-------~aeR~--if~slkpR~eIqarID~iy~ehf-~g~~~IGVHVRhGngeD~~~h-~---- 186 (321)
T PF05830_consen 122 NTVVCDACLMWRCDE-------EAERE--IFSSLKPRPEIQARIDAIYREHF-AGYSVIGVHVRHGNGEDIMDH-A---- 186 (321)
T ss_dssp SEEEE-S--TTSS-H-------HHHHH--HHHHS-B-HHHHHHHHHHHHHHT-TTSEEEEEEE-----------------
T ss_pred chhhhHhhcCCcchh-------HHHHH--HHHhCCCCHHHHHHHHHHHHHHc-CCCceEEEEEeccCCcchhcc-C----
Confidence 457776555555432 33333 59999999999999888776543 2446899999941 122222 1
Q ss_pred CChhHHHHHHHHHhhccccccccCCchhhhcCCCCCCCHHHH---HHHHHHhCCCCCcEEEEeeccccCCcccchHHHHh
Q 043543 163 LTDAESKELTIMRENTNHWKVKKINSTEQRIGGYCPLTPKEV---GIFLQALGYPPSTIIYIAAGEIYGGNTHLSELMYR 239 (381)
Q Consensus 163 ~~~~e~~eL~~~R~~~~~w~~k~i~~~~~R~~G~CPLtPeEv---gl~LralGf~~~T~IYlA~g~iygg~~~l~~L~~~ 239 (381)
+.|.... .+=..| ...++++-.+.++.|+||+-. ...++-+++.
T Consensus 187 ----------------~~~~D~e-------------~~L~~V~~ai~~ak~~~~~k~~~IFLATDS----aeVid~fr~~ 233 (321)
T PF05830_consen 187 ----------------PYWADEE-------------RALRQVCTAIDKAKALAPPKPVRIFLATDS----AEVIDQFRKK 233 (321)
T ss_dssp -------------------HHHH-------------HHHHHHHHHHHHHHTS--SS-EEEEEEES-----HHHHHHHHHH
T ss_pred ----------------ccccCch-------------HHHHHHHHHHHHHHhccCCCCeeEEEecCc----HHHHHHHHHH
Confidence 2232110 000111 122355556678999999988 6778999999
Q ss_pred CCCcccccccCCHHHHHHHHh-----hhhhhhhhhheecccCceee-eCCCCchhHh
Q 043543 240 FPNLVFKETLATKEELKAFAN-----HASQTAALDYLISVESDVFI-PSHSGNMARA 290 (381)
Q Consensus 240 fP~l~tKe~L~~~~eL~~f~~-----~s~~~aAlDy~V~~~SDvFv-~t~~Gnf~~~ 290 (381)
||.+++-++=..+..-.++-+ .+-..|-+|-+....+|+-| .+-.+.|++.
T Consensus 234 FPdiiti~k~F~~~~~g~Lhs~~~g~~gg~~ALIDM~LLSrCD~LIr~~ptS~Fsr~ 290 (321)
T PF05830_consen 234 FPDIITIPKQFPASQAGPLHSAAVGIEGGESALIDMYLLSRCDYLIRFPPTSAFSRY 290 (321)
T ss_dssp STTEE----------------HHHHHHHHHHHHHHHHHHTTSSEEEEESTT-GGGHH
T ss_pred CCCeEEcccccCCCCCCcCcccccccchHHHHHHHHHHHHhCCeEEEcCCCchhhhH
Confidence 999877655333222112211 23356889999999999999 5666666543
No 3
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.93 E-value=0.53 Score=47.10 Aligned_cols=176 Identities=17% Similarity=0.235 Sum_probs=101.8
Q ss_pred hccEEEEeecCCcc--ccCCCChhHHHHhhhhhcccccccchHHHHHHHHHHHHHhcCCCeEEEeccchhhhHhhhcCCC
Q 043543 84 EYQVIHVAKSDSRL--ANNDLPLDIQRLRCRALYYALRFSPPIEILGEKLVERLRSLGGRYIALHLRYEKDMLSFTGCTY 161 (381)
Q Consensus 84 k~~Vi~l~~~~~rl--a~~~lp~~iq~LRCr~nf~ALrF~p~I~~lg~~lV~Rlr~~g~pfiAlHLR~E~Dmla~sgC~~ 161 (381)
+|-|+.|++..... -.+. -.||| -||.+.+|.+.|.+.+.-=- -+||+++|||.-.||+-- |.+
T Consensus 184 eyPVLAf~gAPA~FPv~~e~--~~lQk--------Yl~WS~r~~e~~k~fI~a~L--~rpfvgiHLRng~DWvra--Ceh 249 (386)
T KOG3849|consen 184 EYPVLAFSGAPAPFPVKGEV--WSLQK--------YLRWSSRITEQAKKFISANL--ARPFVGIHLRNGADWVRA--CEH 249 (386)
T ss_pred cCceeeecCCCCCCcccccc--ccHHH--------HHHHHHHHHHHHHHHHHHhc--CcceeEEEeecCchHHHH--HHH
Confidence 67788887754321 1111 14776 37889999999988665421 259999999999999875 876
Q ss_pred CCChhHHHHHHHHHhhccccccccCCchhhhc-----CCCCCCCHHHHHHHHH-HhC-CCCCcEEEEeeccccCCcccch
Q 043543 162 GLTDAESKELTIMRENTNHWKVKKINSTEQRI-----GGYCPLTPKEVGIFLQ-ALG-YPPSTIIYIAAGEIYGGNTHLS 234 (381)
Q Consensus 162 g~~~~e~~eL~~~R~~~~~w~~k~i~~~~~R~-----~G~CPLtPeEvgl~Lr-alG-f~~~T~IYlA~g~iygg~~~l~ 234 (381)
--.... +|.--..---...+. ...|-=.-+++-.-++ ..| ...-..+|+|+-. +.-+.
T Consensus 250 ikd~~~-----------~hlfASpQClGy~~~~gaLt~e~C~Psk~~I~rqik~~v~si~dakSVfVAsDs----~hmi~ 314 (386)
T KOG3849|consen 250 IKDTTN-----------RHLFASPQCLGYGHHLGALTKEICSPSKQQILRQIKEKVGSIGDAKSVFVASDS----DHMID 314 (386)
T ss_pred hcccCC-----------CccccChhhccccccccccchhhhCccHHHHHHHHHHHHhhhcccceEEEeccc----hhhhH
Confidence 211000 111000000000111 2345444444422221 222 2234469999876 44344
Q ss_pred HHH-HhCCCcccccccCCHHHHHHHHhhhhhhhhhhheecccCceeeeCCCCchhHhHhHhhhhcCC
Q 043543 235 ELM-YRFPNLVFKETLATKEELKAFANHASQTAALDYLISVESDVFIPSHSGNMARAVEGHRRFLGH 300 (381)
Q Consensus 235 ~L~-~~fP~l~tKe~L~~~~eL~~f~~~s~~~aAlDy~V~~~SDvFv~t~~Gnf~~~v~GhR~y~G~ 300 (381)
-|. +++|-=..-..|-+ --+-+|..|.-+||-||+|--+.|+..|.-.|-..|+
T Consensus 315 Eln~aL~~~~i~vh~l~p------------dd~y~dLaIlGqadhFiGNCvSsfsafvKRERD~~Gr 369 (386)
T KOG3849|consen 315 ELNEALKPYEIEVHRLEP------------DDMYTDLAILGQADHFIGNCVSSFSAFVKRERDHAGR 369 (386)
T ss_pred HHHHhhcccceeEEecCc------------ccchhhhhhhcccchhhhhhHHHHHHHHhhhhcccCC
Confidence 444 44543222222211 2245788899999999999999999999999988883
No 4
>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=67.54 E-value=35 Score=36.22 Aligned_cols=145 Identities=24% Similarity=0.296 Sum_probs=86.6
Q ss_pred cccccchHHHHHHHHHHHHHhcC--CCeEEEeccchhhhHhhhcCCCCCChhHHHHHHHHHhhccccccccCCchhhhcC
Q 043543 117 ALRFSPPIEILGEKLVERLRSLG--GRYIALHLRYEKDMLSFTGCTYGLTDAESKELTIMRENTNHWKVKKINSTEQRIG 194 (381)
Q Consensus 117 ALrF~p~I~~lg~~lV~Rlr~~g--~pfiAlHLR~E~Dmla~sgC~~g~~~~e~~eL~~~R~~~~~w~~k~i~~~~~R~~ 194 (381)
-+||+|-.++ +|-+-|++.| .|-|+||.|-.. .-|+++---.|+.|=. |-
T Consensus 340 L~Rpqp~t~~---~l~~a~k~lg~~~PivGvhvRRTD---------KVGTEAAfH~~eEYM~----~v------------ 391 (580)
T KOG3705|consen 340 LMRPQPATQE---KLDKALKSLGLDKPIVGVHVRRTD---------KVGTEAAFHALEEYME----WV------------ 391 (580)
T ss_pred HhCCChhhHH---HHHHHHHhCCCCCceeeEEEEecc---------cccchhhhhhHHHHHH----HH------------
Confidence 4788887775 4555666654 699999998742 2233322223433332 21
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCcEEEEeeccccCCcccchHHHHhCCCcccccccCCHHHHHHHHh-------hhhhhhh
Q 043543 195 GYCPLTPKEVGIFLQALGYPPSTIIYIAAGEIYGGNTHLSELMYRFPNLVFKETLATKEELKAFAN-------HASQTAA 267 (381)
Q Consensus 195 G~CPLtPeEvgl~LralGf~~~T~IYlA~g~iygg~~~l~~L~~~fP~l~tKe~L~~~~eL~~f~~-------~s~~~aA 267 (381)
|+--.+|..=|=+-.-+||||+-+ -..+.--+.-|||. .+....|.+.-+. -|...--
T Consensus 392 -------E~~f~~le~rg~~~~rRiflAsDD----p~vv~EAk~kYPnY----e~igd~eia~~A~l~nRYTd~sL~GvI 456 (580)
T KOG3705|consen 392 -------EIWFKVLEKRGKPLERRIFLASDD----PTVVPEAKNKYPNY----EVIGDTEIAKTAQLNNRYTDASLMGVI 456 (580)
T ss_pred -------HHHHHHHHHhCCchhheEEEecCC----chhchHhhccCCCc----EEeccHHHHHHhhccccchhhhhhhee
Confidence 111223333344556689999998 44566778889997 4444445554432 2344556
Q ss_pred hhheecccCceeeeCCCCchhHhHhHhhhhcCCCceeccChhh
Q 043543 268 LDYLISVESDVFIPSHSGNMARAVEGHRRFLGHRKTITPDRRG 310 (381)
Q Consensus 268 lDy~V~~~SDvFv~t~~Gnf~~~v~GhR~y~G~~kti~Pdrk~ 310 (381)
+|..+.+.+|..|.|+++..-+. -+--.+|.-||...
T Consensus 457 lDIh~LS~~d~LVCTFSSQVCRv------aYEimQt~~pDa~~ 493 (580)
T KOG3705|consen 457 LDIHILSKVDYLVCTFSSQVCRV------AYEIMQTSGPDAGS 493 (580)
T ss_pred eeeeeecccceEEEechHHHHHH------HHHHHhccCCCccc
Confidence 79999999999999988855332 22234555666543
No 5
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=63.01 E-value=3.8 Score=33.57 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHhCCCCCcEEEEeeccccCCcccchHHHHhCCCcccccc
Q 043543 198 PLTPKEVGIFLQALGYPPSTIIYIAAGEIYGGNTHLSELMYRFPNLVFKET 248 (381)
Q Consensus 198 PLtPeEvgl~LralGf~~~T~IYlA~g~iygg~~~l~~L~~~fP~l~tKe~ 248 (381)
++|-.+++-+|+-..|+ +.+|+.|+-++|++++++.
T Consensus 39 ~~T~~Qv~~il~~f~fd---------------~~kl~~lk~l~p~i~D~~n 74 (95)
T PF14771_consen 39 CFTCAQVKQILSLFSFD---------------NDKLKALKLLYPYIVDPQN 74 (95)
T ss_pred ceeHHHHHHHHHHcCCC---------------HHHHHHHHHHhhhccCHHH
Confidence 39999999999999887 4569999999999999964
No 6
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=55.94 E-value=20 Score=31.88 Aligned_cols=98 Identities=12% Similarity=-0.000 Sum_probs=55.6
Q ss_pred hhcccccccchHHHHHHHHHHHHHhcCCCeEEEeccchhhhHhh----hcCCCCCChhHH--HHHHHHHhhccccccccC
Q 043543 113 ALYYALRFSPPIEILGEKLVERLRSLGGRYIALHLRYEKDMLSF----TGCTYGLTDAES--KELTIMRENTNHWKVKKI 186 (381)
Q Consensus 113 ~nf~ALrF~p~I~~lg~~lV~Rlr~~g~pfiAlHLR~E~Dmla~----sgC~~g~~~~e~--~eL~~~R~~~~~w~~k~i 186 (381)
++..+|++.++..+.-+.+.+.|+..| .++-++...+...+.. .-|.....+-.. ....+++|-
T Consensus 49 ~~~~~l~~~~d~~~~l~ei~rvLkpGG-~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl--------- 118 (160)
T PLN02232 49 TMGYGLRNVVDRLRAMKEMYRVLKPGS-RVSILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYL--------- 118 (160)
T ss_pred EecchhhcCCCHHHHHHHHHHHcCcCe-EEEEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhH---------
Confidence 344567777787777788888787655 8888877554322110 011110000000 000111110
Q ss_pred CchhhhcCCCCCCCHHHHHHHHHHhCCCCCcEEEEeecc
Q 043543 187 NSTEQRIGGYCPLTPKEVGIFLQALGYPPSTIIYIAAGE 225 (381)
Q Consensus 187 ~~~~~R~~G~CPLtPeEvgl~LralGf~~~T~IYlA~g~ 225 (381)
...... +++|+|...+|+..||.+-+.-+++.|-
T Consensus 119 ----~~si~~-f~~~~el~~ll~~aGF~~~~~~~~~~g~ 152 (160)
T PLN02232 119 ----KYSING-YLTGEELETLALEAGFSSACHYEISGGF 152 (160)
T ss_pred ----HHHHHH-CcCHHHHHHHHHHcCCCcceEEECcchH
Confidence 000122 4899999999999999998888888775
No 7
>PF00799 Gemini_AL1: Geminivirus Rep catalytic domain; InterPro: IPR022690 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity. The AL1 proteins encodes the replication initiator protein (Rep) of geminiviruses, which is a replicon-specific initiator enzyme and is an essential component of the replisome []. For geminivirus Rep protein, this N-terminal region is crucial for origin recognition and DNA cleavage and nucleotidyl transfer []. It is found in association with PF08283 from PFAM. ; GO: 0006260 DNA replication; PDB: 1L5I_A 1L2M_A.
Probab=47.08 E-value=21 Score=31.07 Aligned_cols=29 Identities=34% Similarity=0.346 Sum_probs=16.9
Q ss_pred CCCCCHHHHHHHHHHhCCCCCcEEEEeecc
Q 043543 196 YCPLTPKEVGIFLQALGYPPSTIIYIAAGE 225 (381)
Q Consensus 196 ~CPLtPeEvgl~LralGf~~~T~IYlA~g~ 225 (381)
.|||+|||+...|+++--+ ....||..++
T Consensus 14 qC~l~ke~~l~~L~~l~~~-~~~~yI~v~r 42 (114)
T PF00799_consen 14 QCSLTKEEALEQLKNLLTP-SNKKYIRVCR 42 (114)
T ss_dssp T----HHHHHHHHHH---S-S-EEEEEEEE
T ss_pred CCCCCHHHHHHHHHHhCCc-cCceEEEeec
Confidence 6999999999999999754 4677886654
No 8
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=47.01 E-value=26 Score=34.85 Aligned_cols=71 Identities=31% Similarity=0.382 Sum_probs=46.5
Q ss_pred HHHHHHHHHhCCCCCcEEEEeeccccCCcccchHHHHhCCCcccccccCCHHHHHHHHhhhhhhhhhhheecccCceeee
Q 043543 202 KEVGIFLQALGYPPSTIIYIAAGEIYGGNTHLSELMYRFPNLVFKETLATKEELKAFANHASQTAALDYLISVESDVFIP 281 (381)
Q Consensus 202 eEvgl~LralGf~~~T~IYlA~g~iygg~~~l~~L~~~fP~l~tKe~L~~~~eL~~f~~~s~~~aAlDy~V~~~SDvFv~ 281 (381)
.|++..|.+-| .+|.|.+|. .-.+..+.+.+..++.+. |+....|..+ +||- ..||.||+
T Consensus 198 ~~l~~~l~~~~----~~Vvl~g~~--~e~e~~~~i~~~~~~~~~---l~~k~sL~e~-------~~li----~~a~l~I~ 257 (334)
T COG0859 198 AELAELLIAKG----YQVVLFGGP--DEEERAEEIAKGLPNAVI---LAGKTSLEEL-------AALI----AGADLVIG 257 (334)
T ss_pred HHHHHHHHHCC----CEEEEecCh--HHHHHHHHHHHhcCCccc---cCCCCCHHHH-------HHHH----hcCCEEEc
Confidence 36778888888 789999887 334445678888887544 4443333333 2222 67999999
Q ss_pred CCCCchhHhHh
Q 043543 282 SHSGNMARAVE 292 (381)
Q Consensus 282 t~~Gnf~~~v~ 292 (381)
+.+|-|.=+-+
T Consensus 258 ~DSg~~HlAaA 268 (334)
T COG0859 258 NDSGPMHLAAA 268 (334)
T ss_pred cCChHHHHHHH
Confidence 99995543333
No 9
>PF10892 DUF2688: Protein of unknown function (DUF2688); InterPro: IPR024392 Members of this protein family are annotated as KleB, and may play a role in the regulation of transcription in plasmids.
Probab=41.69 E-value=20 Score=27.98 Aligned_cols=16 Identities=44% Similarity=0.713 Sum_probs=13.7
Q ss_pred CCCCCCHHHHHHHHHHh
Q 043543 195 GYCPLTPKEVGIFLQAL 211 (381)
Q Consensus 195 G~CPLtPeEvgl~Lral 211 (381)
|-| +||||-+.+++++
T Consensus 42 ~~C-itpEE~~~I~e~~ 57 (60)
T PF10892_consen 42 GDC-ITPEEDREILEAT 57 (60)
T ss_pred hcc-CCHHHHHHHHHHH
Confidence 567 9999999999875
No 10
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=39.10 E-value=43 Score=31.80 Aligned_cols=27 Identities=11% Similarity=0.090 Sum_probs=22.0
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCCcEEE
Q 043543 194 GGYCPLTPKEVGIFLQALGYPPSTIIY 220 (381)
Q Consensus 194 ~G~CPLtPeEvgl~LralGf~~~T~IY 220 (381)
+-..|+|++|...+|+.-||..-..+|
T Consensus 204 ~~~~~~~~~~~~~~L~~aGF~~v~~~~ 230 (247)
T PRK15451 204 NVMLTDSVETHKARLHKAGFEHSELWF 230 (247)
T ss_pred hhcccCCHHHHHHHHHHcCchhHHHHH
Confidence 456789999999999999999755444
No 11
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=37.73 E-value=14 Score=25.98 Aligned_cols=34 Identities=32% Similarity=0.533 Sum_probs=22.8
Q ss_pred chHHHHhCCCcccccccCCHHHHHHHH--hhhhhhhhhhheec
Q 043543 233 LSELMYRFPNLVFKETLATKEELKAFA--NHASQTAALDYLIS 273 (381)
Q Consensus 233 l~~L~~~fP~l~tKe~L~~~~eL~~f~--~~s~~~aAlDy~V~ 273 (381)
+.-|+++||++ +.+.+..-. +..+..+|+|.+.+
T Consensus 5 v~~L~~mFP~~-------~~~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 5 VQQLQEMFPDL-------DREVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp HHHHHHHSSSS--------HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHCCCC-------CHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 57799999998 333333332 35688899888764
No 12
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=34.79 E-value=33 Score=26.20 Aligned_cols=24 Identities=29% Similarity=0.510 Sum_probs=19.9
Q ss_pred hhcCCCCCCCHHHHHHHHHHhCCCC
Q 043543 191 QRIGGYCPLTPKEVGIFLQALGYPP 215 (381)
Q Consensus 191 ~R~~G~CPLtPeEvgl~LralGf~~ 215 (381)
.+..|.. ++++|+.-+|+.|||.-
T Consensus 12 ~~llG~~-i~~~ei~~~L~~lg~~~ 35 (71)
T smart00874 12 NRLLGLD-LSAEEIEEILKRLGFEV 35 (71)
T ss_pred HHHHCCC-CCHHHHHHHHHHCCCeE
Confidence 3556764 99999999999999974
No 13
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=30.46 E-value=1.1e+02 Score=30.16 Aligned_cols=111 Identities=21% Similarity=0.317 Sum_probs=62.4
Q ss_pred hcCCCCCCCHHHHHHHHHHhCCCCCcEEEEeeccccCCcccchHHHH-------hCCCcccccccCC-------HHHHHH
Q 043543 192 RIGGYCPLTPKEVGIFLQALGYPPSTIIYIAAGEIYGGNTHLSELMY-------RFPNLVFKETLAT-------KEELKA 257 (381)
Q Consensus 192 R~~G~CPLtPeEvgl~LralGf~~~T~IYlA~g~iygg~~~l~~L~~-------~fP~l~tKe~L~~-------~~eL~~ 257 (381)
+..|..-.+|.|+=-=|++-||. .|||-+-.|..|++. .-|++ .|.++.=-.-|++ .++.+.
T Consensus 51 ~~~g~~i~~~~eaL~~L~~~G~~---~V~VQplhiipG~Ey-~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~ 126 (262)
T PF06180_consen 51 ERDGIKIDSPEEALAKLADEGYT---EVVVQPLHIIPGEEY-EKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEA 126 (262)
T ss_dssp HCHT-----HHHHHHHHHHCT-----EEEEEE--SCSSHHH-HHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHH
T ss_pred hcCCCCcCCHHHHHHHHHHCCCC---EEEEeecceeCcHhH-HHHHHHHHHhhccCCeEEecccccccccccCChHHHHH
Confidence 33476789999999999999997 799999998888874 34443 3555433334444 555544
Q ss_pred HH-------------------hhhh------hhhhhhheeccc--CceeeeCCCC--chhHhHhHhhhhcCC-CceeccC
Q 043543 258 FA-------------------NHAS------QTAALDYLISVE--SDVFIPSHSG--NMARAVEGHRRFLGH-RKTITPD 307 (381)
Q Consensus 258 f~-------------------~~s~------~~aAlDy~V~~~--SDvFv~t~~G--nf~~~v~GhR~y~G~-~kti~Pd 307 (381)
+. +|++ .-++|+++.... -+|||+|-.| ++..++.--+. .|. +-++.|-
T Consensus 127 va~aL~~~~~~~~~~~a~vlmGHGt~h~an~~Y~~l~~~l~~~~~~~v~vgtvEG~P~~~~vi~~L~~-~g~k~V~L~Pl 205 (262)
T PF06180_consen 127 VAEALAEEFPKKRKDEAVVLMGHGTPHPANAAYSALQAMLKKHGYPNVFVGTVEGYPSLEDVIARLKK-KGIKKVHLIPL 205 (262)
T ss_dssp HHHHHHCCS-TT-TTEEEEEEE---SCHHHHHHHHHHHHHHCCT-TTEEEEETTSSSBHHHHHHHHHH-HT-SEEEEEEE
T ss_pred HHHHHHHhccccCCCCEEEEEeCCCCCCccHHHHHHHHHHHhCCCCeEEEEEeCCCCCHHHHHHHHHh-cCCCeEEEEec
Confidence 43 2322 345677777666 4799999998 77777664443 353 3455553
No 14
>PRK10556 hypothetical protein; Provisional
Probab=27.65 E-value=37 Score=29.33 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=16.9
Q ss_pred CCHHHHHHHHHHhCCCCCc
Q 043543 199 LTPKEVGIFLQALGYPPST 217 (381)
Q Consensus 199 LtPeEvgl~LralGf~~~T 217 (381)
|-|.||+.+|...||..|.
T Consensus 3 LRPDEVArVLe~aGF~~D~ 21 (111)
T PRK10556 3 LRPDEVARVLEKAGFTVDV 21 (111)
T ss_pred cChHHHHHHHHhcCceEEE
Confidence 6799999999999998664
No 15
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=26.91 E-value=37 Score=26.37 Aligned_cols=25 Identities=24% Similarity=0.495 Sum_probs=16.9
Q ss_pred hhcCCCCCCCHHHHHHHHHHhCCCCC
Q 043543 191 QRIGGYCPLTPKEVGIFLQALGYPPS 216 (381)
Q Consensus 191 ~R~~G~CPLtPeEvgl~LralGf~~~ 216 (381)
.+..|.. ++++|+.-+|+.|||.-+
T Consensus 12 ~~~lG~~-i~~~~i~~~L~~lg~~~~ 36 (70)
T PF03484_consen 12 NKLLGID-ISPEEIIKILKRLGFKVE 36 (70)
T ss_dssp HHHHTS----HHHHHHHHHHTT-EEE
T ss_pred HHHhCCC-CCHHHHHHHHHHCCCEEE
Confidence 3456765 999999999999999843
No 16
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=26.66 E-value=4.9e+02 Score=26.79 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=31.8
Q ss_pred CCCCCChhHHHHHHHHHhhccccccccCCchhhhcCCCCCCCH--------HHHHHHHHHhCCCC
Q 043543 159 CTYGLTDAESKELTIMRENTNHWKVKKINSTEQRIGGYCPLTP--------KEVGIFLQALGYPP 215 (381)
Q Consensus 159 C~~g~~~~e~~eL~~~R~~~~~w~~k~i~~~~~R~~G~CPLtP--------eEvgl~LralGf~~ 215 (381)
|....|-.=+..|.++..-..+...- +++ .|.||+-| ||+..+|+.+|++.
T Consensus 248 ~Hnd~GlA~AN~lAA~~aGa~~vd~s-v~G-----lGecPfa~graGN~atE~lv~~L~~~G~~t 306 (347)
T PLN02746 248 FHDTYGQALANILVSLQMGISTVDSS-VAG-----LGGCPYAKGASGNVATEDVVYMLNGLGVST 306 (347)
T ss_pred ECCCCChHHHHHHHHHHhCCCEEEEe-ccc-----ccCCCCCCCCCCChhHHHHHHHHHhcCCCC
Confidence 34444445556677766544333222 343 68899988 47888999888873
No 17
>PF09400 DUF2002: Protein of unknown function (DUF2002); InterPro: IPR018994 This entry represents a group of putative cytoplasmic proteins. The structure of these proteins form an antiparallel beta sheet and contain some alpha helical regions. ; PDB: 2G7J_A.
Probab=24.46 E-value=36 Score=29.65 Aligned_cols=19 Identities=32% Similarity=0.529 Sum_probs=14.4
Q ss_pred CCHHHHHHHHHHhCCCCCc
Q 043543 199 LTPKEVGIFLQALGYPPST 217 (381)
Q Consensus 199 LtPeEvgl~LralGf~~~T 217 (381)
|-|.||+.+|...||..|.
T Consensus 3 lrpdeva~vle~~gf~~d~ 21 (111)
T PF09400_consen 3 LRPDEVARVLEKAGFERDY 21 (111)
T ss_dssp --HHHHHHHHHHTT-EEEE
T ss_pred cChHHHHHHHHhcCceEEE
Confidence 6799999999999998654
No 18
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=24.45 E-value=36 Score=22.33 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=21.0
Q ss_pred hhHHHHhhhhcCCCCCCCchHHHHHHH
Q 043543 309 RGLVELFDKLKSGKLREGPSFSQRVQQ 335 (381)
Q Consensus 309 k~l~~l~~~~~~~~~~~w~~f~~~v~~ 335 (381)
+.+.+.||.-.+|.++ .+||...+++
T Consensus 3 ~~~F~~~D~d~dG~I~-~~Ef~~~~~~ 28 (29)
T PF00036_consen 3 KEAFREFDKDGDGKID-FEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHSTTSSSEEE-HHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCC-HHHHHHHHHh
Confidence 3566778888899996 9999988875
No 19
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=23.22 E-value=96 Score=26.52 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHhCCCCCcE--EEEeeccccCCcc
Q 043543 199 LTPKEVGIFLQALGYPPSTI--IYIAAGEIYGGNT 231 (381)
Q Consensus 199 LtPeEvgl~LralGf~~~T~--IYlA~g~iygg~~ 231 (381)
|+||.++-+|+-|.-+.+|+ ||=+.|.+-...+
T Consensus 1 l~pe~a~plLrrL~~Pt~~RARlyd~dG~Ll~DSr 35 (112)
T PF13756_consen 1 LNPERARPLLRRLISPTRTRARLYDPDGNLLADSR 35 (112)
T ss_pred CCHHHHHHHHHHhCCCCCceEEEECCCCCEEeecc
Confidence 68999999999999999885 6667777553333
No 20
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=22.30 E-value=95 Score=27.41 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=13.9
Q ss_pred HHHHHHHHhCCCCCcEEEEeec
Q 043543 203 EVGIFLQALGYPPSTIIYIAAG 224 (381)
Q Consensus 203 Evgl~LralGf~~~T~IYlA~g 224 (381)
+....-++||||..|.||.|.=
T Consensus 81 ~A~~~A~~lG~p~gt~IYfavD 102 (136)
T PF08924_consen 81 DAVAAARALGFPAGTPIYFAVD 102 (136)
T ss_dssp HHHHHHHHTT--SS-EEEEE--
T ss_pred HHHHHHHHcCCCCCCEEEEEee
Confidence 4455677999999999999976
No 21
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.
Probab=22.07 E-value=98 Score=26.93 Aligned_cols=47 Identities=19% Similarity=0.247 Sum_probs=34.2
Q ss_pred CCHHHH-HHHHHHhCCCCCcEEEEeeccccCCcccchHHHHhCCCccccccc
Q 043543 199 LTPKEV-GIFLQALGYPPSTIIYIAAGEIYGGNTHLSELMYRFPNLVFKETL 249 (381)
Q Consensus 199 LtPeEv-gl~LralGf~~~T~IYlA~g~iygg~~~l~~L~~~fP~l~tKe~L 249 (381)
++|--+ -.+|..++ +.++.|++...+ |......|+++.|.-+.++.|
T Consensus 80 ~sPCG~Crq~l~e~~-~~~~~v~~~~~~---~~~~~~~l~eLLP~~f~~~~l 127 (127)
T TIGR01354 80 VSPCGACRQVLAEFA-GPDTPIYMTNND---GTYKVYTVGELLPFGFGPSDL 127 (127)
T ss_pred cCccHHHHHHHHHhC-CCCcEEEEECCC---CCEEEEEHHHhCcCcCCcCcC
Confidence 455444 55788887 678999998877 444457899999988777654
No 22
>PRK05578 cytidine deaminase; Validated
Probab=21.34 E-value=95 Score=27.45 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=33.9
Q ss_pred CCHHHH-HHHHHHhCCCCCcEEEEeeccccCCcccchHHHHhCCCcccccccC
Q 043543 199 LTPKEV-GIFLQALGYPPSTIIYIAAGEIYGGNTHLSELMYRFPNLVFKETLA 250 (381)
Q Consensus 199 LtPeEv-gl~LralGf~~~T~IYlA~g~iygg~~~l~~L~~~fP~l~tKe~L~ 250 (381)
.+|==. -.+|..++ +.+|.||+...+ |......|+++.|.-+++++|+
T Consensus 83 ~sPCG~CRQ~l~e~~-~~~~~v~l~~~~---~~~~~~~l~eLLP~~f~~~~l~ 131 (131)
T PRK05578 83 LSPCGRCRQVLAEFG-GPDLLVTLVAKD---GPTGEMTLGELLPYAFTPDDLG 131 (131)
T ss_pred cCccHHHHHHHHHhC-CCCcEEEEEcCC---CCEEEEEHHHhCcCcCChhhcC
Confidence 445433 34666664 579999998776 3444578999999999888763
No 23
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=20.27 E-value=1.6e+02 Score=31.28 Aligned_cols=68 Identities=25% Similarity=0.503 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhcCCCeEEEeccchhhhHhhhcCCCCCChhHHHHHHHHHhhccccccccCCchhhhcCCCCCCCHHHHHH
Q 043543 127 LGEKLVERLRSLGGRYIALHLRYEKDMLSFTGCTYGLTDAESKELTIMRENTNHWKVKKINSTEQRIGGYCPLTPKEVGI 206 (381)
Q Consensus 127 lg~~lV~Rlr~~g~pfiAlHLR~E~Dmla~sgC~~g~~~~e~~eL~~~R~~~~~w~~k~i~~~~~R~~G~CPLtPeEvgl 206 (381)
....||+-||+.|-+ -+|+|.-.=++-|+ |.+|-.-...+||.+.+ +|.+|++.
T Consensus 371 Ts~~IVkmlreaGAk--eVh~riAsPpi~~p-c~yGIdipt~keLIA~~-----------------------~t~deiae 424 (474)
T KOG0572|consen 371 TSSPIVKMLREAGAK--EVHIRIASPPIKYP-CYYGIDIPTSKELIANK-----------------------LTVDEIAE 424 (474)
T ss_pred chHHHHHHHHHcCCc--EEEEEecCCccccc-ceeecCCCCHHHHHhcC-----------------------CCHHHHHH
Confidence 456788889988744 36999998999987 89887666778887776 88999887
Q ss_pred HHHHhCCCCCcEEEEeecc
Q 043543 207 FLQALGYPPSTIIYIAAGE 225 (381)
Q Consensus 207 ~LralGf~~~T~IYlA~g~ 225 (381)
++ ..|.-+|+.--.
T Consensus 425 ~i-----gadsv~ylsve~ 438 (474)
T KOG0572|consen 425 HI-----GADSVAYLSVEG 438 (474)
T ss_pred Hh-----CCCeeEEeeHHH
Confidence 65 446778886443
No 24
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=20.01 E-value=1.1e+02 Score=29.03 Aligned_cols=23 Identities=43% Similarity=0.702 Sum_probs=19.2
Q ss_pred HHHHHHHHhCCCCCcEEEEeecc
Q 043543 203 EVGIFLQALGYPPSTIIYIAAGE 225 (381)
Q Consensus 203 Evgl~LralGf~~~T~IYlA~g~ 225 (381)
+....-++||||..|.||+|.=.
T Consensus 93 ~A~~~A~~lG~p~gs~IYfavD~ 115 (212)
T cd06418 93 DAVAAARALGFPPGTIIYFAVDF 115 (212)
T ss_pred HHHHHHHHcCCCCCCEEEEEeec
Confidence 34556789999999999999877
Done!