Query 043543
Match_columns 381
No_of_seqs 150 out of 364
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 10:04:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043543.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043543hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 99.3 4.5E-12 1.5E-16 126.5 12.8 166 116-301 217-382 (408)
2 3zy2_A Putative GDP-fucose pro 98.6 6.1E-08 2.1E-12 96.3 6.9 169 84-299 165-348 (362)
3 2de0_X Alpha-(1,6)-fucosyltran 96.8 0.0034 1.2E-07 65.3 9.6 145 118-299 274-421 (526)
4 2hhc_A NODZ, nodulation fucosy 95.1 0.053 1.8E-06 51.9 8.2 144 112-292 142-294 (330)
5 1wgl_A TOLL-interacting protei 50.5 4.3 0.00015 30.3 0.6 46 230-282 10-57 (59)
6 1p3q_Q VPS9P, vacuolar protein 50.2 5.5 0.00019 29.5 1.2 37 232-273 15-51 (54)
7 3zy2_A Putative GDP-fucose pro 36.4 2.9 9.9E-05 41.7 -2.9 44 2-51 31-77 (362)
8 1l2m_A REP protein; A+B fold, 30.0 52 0.0018 27.7 4.2 30 195-225 16-45 (118)
9 1s6c_A KV4 potassium channel-i 28.3 11 0.00036 31.2 -0.4 49 283-337 69-122 (183)
10 2dhy_A CUE domain-containing p 27.7 15 0.00051 28.1 0.4 42 230-276 19-60 (67)
11 2g7j_A Putative cytoplasmic pr 25.6 25 0.00085 29.7 1.4 19 199-217 3-21 (124)
12 3if4_A Integron cassette prote 24.6 66 0.0023 26.9 3.7 43 64-108 69-111 (119)
13 2eqr_A N-COR1, N-COR, nuclear 23.1 51 0.0018 23.9 2.6 18 194-211 10-27 (61)
14 3l32_A Phosphoprotein; antipar 22.8 31 0.0011 24.5 1.2 23 117-139 2-24 (45)
15 3dd4_A KV channel-interacting 22.2 32 0.0011 30.1 1.6 117 197-336 45-167 (229)
16 2vsw_A Dual specificity protei 22.1 38 0.0013 27.9 1.9 47 204-260 100-148 (153)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.35 E-value=4.5e-12 Score=126.50 Aligned_cols=166 Identities=16% Similarity=0.157 Sum_probs=108.2
Q ss_pred ccccccchHHHHHHHHHHHHHhcCCCeEEEeccchhhhHhhhcCCCCCChhHHHHHHHHHhhccccccccCCchhhhcCC
Q 043543 116 YALRFSPPIEILGEKLVERLRSLGGRYIALHLRYEKDMLSFTGCTYGLTDAESKELTIMRENTNHWKVKKINSTEQRIGG 195 (381)
Q Consensus 116 ~ALrF~p~I~~lg~~lV~Rlr~~g~pfiAlHLR~E~Dmla~sgC~~g~~~~e~~eL~~~R~~~~~w~~k~i~~~~~R~~G 195 (381)
..|+|++.|.++|+..++..-. .+|+++|+|...|+... |.......- --+.--||+..+.. .-...
T Consensus 217 r~l~~s~~l~~~a~~fi~~~L~--~~~~~~h~r~~~dw~~~--~~~~~~~~~------~~y~~~H~Rr~d~~---~~~~~ 283 (408)
T 4ap5_A 217 RSMVFARHLREVGDEFRSRHLN--STDDADRIPFQEDWMKM--KVKLGSALG------GPYLGVHLRRKDFI---WGHRQ 283 (408)
T ss_dssp HTCCBCHHHHHHHHHHHHHHHC--CCTTTTTCCCCSSGGGC--CCCTTCBCC------EEEEEEEECCTTTT---TTTCS
T ss_pred HHhhhhHHHHHHHHHHHHHHhC--cccceeecccchhHhhh--hcccccccC------CCccccccccccch---hhhhc
Confidence 4799999999999998886553 48888999888888764 443211000 00111233322110 00122
Q ss_pred CCCCCHHHHHHHHHHhCCCCCcEEEEeeccccCCcccchHHHHhCCCcccccccCCHHHHHHHHhhhhhhhhhhheeccc
Q 043543 196 YCPLTPKEVGIFLQALGYPPSTIIYIAAGEIYGGNTHLSELMYRFPNLVFKETLATKEELKAFANHASQTAALDYLISVE 275 (381)
Q Consensus 196 ~CPLtPeEvgl~LralGf~~~T~IYlA~g~iygg~~~l~~L~~~fP~l~tKe~L~~~~eL~~f~~~s~~~aAlDy~V~~~ 275 (381)
.+|-.++-+..+.+.+.=-+-+.||||+-+ .++.+..|++.+|.++.-.. ..+++..+ .....|.||-+||.+
T Consensus 284 ~~ps~~~~~~~i~~~~~~~~~~~VyiATD~---~~~~~~~l~~~~~~~~~~~~--~~~~~~~~--~d~~~a~idq~Ic~~ 356 (408)
T 4ap5_A 284 DVPSLEGAVRKIRSLMKTHRLDKVFVATDA---VRKEYEELKKLLPEMVRFEP--TWEELELY--KDGGVAIIDQWICAH 356 (408)
T ss_dssp SSCCHHHHHHHHHHHHHHHTCSCEEEEECC---CHHHHHHHHHHCTTEECCCC--CHHHHHHH--HHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHhcCCCEEEEeCCC---chhHHHHHHHhCCCcEEecC--cchhhhcc--CcchhhHHHHHHHHh
Confidence 334333333333333322244579999865 24446789999998754322 34566666 345779999999999
Q ss_pred CceeeeCCCCchhHhHhHhhhhcCCC
Q 043543 276 SDVFIPSHSGNMARAVEGHRRFLGHR 301 (381)
Q Consensus 276 SDvFv~t~~Gnf~~~v~GhR~y~G~~ 301 (381)
||+||+|..++|+..|.-.|.+.|+.
T Consensus 357 a~~FiGt~~StfS~~I~~eR~~~G~~ 382 (408)
T 4ap5_A 357 ARFFIGTSVSTFSFRIHEEREILGLD 382 (408)
T ss_dssp EEEEEBCTTCHHHHHHHHHHHHHTBC
T ss_pred CCeeEeCCcCchhHHHHHHHHhcCCC
Confidence 99999999999999999999999976
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=98.57 E-value=6.1e-08 Score=96.32 Aligned_cols=169 Identities=17% Similarity=0.293 Sum_probs=110.1
Q ss_pred hccEEEEeecCCcc-c-cCCCChhHHHHhhhhhcccccccchHHHHHHHHHHHHHhcCCCeEEEeccchhhhHhhhcCCC
Q 043543 84 EYQVIHVAKSDSRL-A-NNDLPLDIQRLRCRALYYALRFSPPIEILGEKLVERLRSLGGRYIALHLRYEKDMLSFTGCTY 161 (381)
Q Consensus 84 k~~Vi~l~~~~~rl-a-~~~lp~~iq~LRCr~nf~ALrF~p~I~~lg~~lV~Rlr~~g~pfiAlHLR~E~Dmla~sgC~~ 161 (381)
+|-|+.|++.-..- . .++ -.||| -|+++++|.+.|++.++.--. +||||+|||-=.|+.-. |.+
T Consensus 165 ~~pVlAf~gaPa~FPv~~e~--r~Lqk--------Ym~WS~~i~~~a~~fI~~~L~--rpyVgIHLR~G~DW~~a--C~h 230 (362)
T 3zy2_A 165 EYPVLAFSSAPAPFPSKGKV--WSIQK--------YLRWSSRITEQAKKFISANLA--KPFVAVHLRNDADWVRV--CEH 230 (362)
T ss_dssp TCSEEEESSCSSCSSCCGGG--GGGGG--------GCCBCHHHHHHHHHHHHHHCC--SSEEEEEECCCHHHHHH--HHT
T ss_pred cCceEeecCCCCCCCcChhh--HhHHH--------hccccHHHHHHHHHHHHHhcC--CCeEEEEEecCCcHHHH--Hhh
Confidence 67899998864321 1 011 24555 589999999999998877332 59999999999999877 886
Q ss_pred CCChhHHHHHHHHHhhccccccccCCch---hhhcCC-----CCCCCHHH----HHHHHHHhCCCCCcEEEEeeccccCC
Q 043543 162 GLTDAESKELTIMRENTNHWKVKKINST---EQRIGG-----YCPLTPKE----VGIFLQALGYPPSTIIYIAAGEIYGG 229 (381)
Q Consensus 162 g~~~~e~~eL~~~R~~~~~w~~k~i~~~---~~R~~G-----~CPLtPeE----vgl~LralGf~~~T~IYlA~g~iygg 229 (381)
--..+ .++... ++. -....| .|==+-++ +..+++.++ -..||||+-.
T Consensus 231 lk~~~-----------~~~lfa---SPQC~Gy~~~~~~lt~emClPSle~I~rqIk~~vk~~~---lksVFIATDa---- 289 (362)
T 3zy2_A 231 IDTTT-----------NRPLFA---SEQCLGEGHHLGTLTKEICSPSKQQILEQIVEKVGSIG---AKSVFVASDK---- 289 (362)
T ss_dssp CCTTT-----------CCCCTT---THHHHCGGGTTCCCCHHHHSCCHHHHHHHHHHHHHHHT---CSEEEEEESS----
T ss_pred hcccc-----------Cccccc---CCcccCCcccCcccchhccCCCHHHHHHHHHHHHHhcC---CcEEEEecCC----
Confidence 21100 011100 000 001112 23112333 444555554 4589999965
Q ss_pred cccchHHHHhCCCcccc-cccCCHHHHHHHHhhhhhhhhhhheecccCceeeeCCCCchhHhHhHhhhhcC
Q 043543 230 NTHLSELMYRFPNLVFK-ETLATKEELKAFANHASQTAALDYLISVESDVFIPSHSGNMARAVEGHRRFLG 299 (381)
Q Consensus 230 ~~~l~~L~~~fP~l~tK-e~L~~~~eL~~f~~~s~~~aAlDy~V~~~SDvFv~t~~Gnf~~~v~GhR~y~G 299 (381)
+..++-|+++|+....+ .++ .++ .|+||-+||.+||+||+|..++|+..|.-.|.-.|
T Consensus 290 ~~~~~ELk~~L~~~~v~vv~~-~pe-----------~a~ID~~I~~~A~~FIGN~~SSFSa~I~rERdi~G 348 (362)
T 3zy2_A 290 DHMIDEINEALKPYEIEAHRQ-EPD-----------DMYTSLAIMGRADLFVGNCVSTFSHIVKRERDHAG 348 (362)
T ss_dssp CCCHHHHHHHHGGGTCCEECC-SSC-----------CHHHHHHHHHHSSEEEECTTCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhhccCceEEEe-CCc-----------hhHHHHHHHHhCCEeecCccccccHHHHHHHHhcC
Confidence 44578899888742111 111 111 79999999999999999999999999999999988
No 3
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=96.83 E-value=0.0034 Score=65.28 Aligned_cols=145 Identities=16% Similarity=0.198 Sum_probs=88.6
Q ss_pred ccccchHHHHHHHHHHHHHhcCCCeEEEeccchhhhHhhhcCCCCCChhHHHHHHHHHhhccccccccCCchhhhcCCCC
Q 043543 118 LRFSPPIEILGEKLVERLRSLGGRYIALHLRYEKDMLSFTGCTYGLTDAESKELTIMRENTNHWKVKKINSTEQRIGGYC 197 (381)
Q Consensus 118 LrF~p~I~~lg~~lV~Rlr~~g~pfiAlHLR~E~Dmla~sgC~~g~~~~e~~eL~~~R~~~~~w~~k~i~~~~~R~~G~C 197 (381)
+|++++|++..+.+.+.+.- ++|.|+||.|-= |-+.. ....-+-+ +-+..+. .|
T Consensus 274 ~rP~~~i~~~I~~~~~~l~~-~~piVGVHIRrG-Dk~~~---E~~~~~~~-~Y~~~v~----~~---------------- 327 (526)
T 2de0_X 274 IRPQPWLEKEIEEATKKLGF-KHPVIGVHVRRT-DKVGT---EAAFHPIE-EYMVHVE----EH---------------- 327 (526)
T ss_dssp TCBCHHHHHHHHHHHHHHTC-CSSEEEEEECCC---------CCCSCSHH-HHHHHHH----HH----------------
T ss_pred cCCCHHHHHHHHHHHHHhCC-CCCEEEEEEeCC-CCCcc---ccccCCHH-HHHHHHH----HH----------------
Confidence 89999999999998888754 459999999963 33221 11111100 0011110 01
Q ss_pred CCCHHHHHHHHHHhCCCCCcEEEEeeccccCCcccchHHHHhCCCc--ccccccC-CHHHHHHHHhhhhhhhhhhheecc
Q 043543 198 PLTPKEVGIFLQALGYPPSTIIYIAAGEIYGGNTHLSELMYRFPNL--VFKETLA-TKEELKAFANHASQTAALDYLISV 274 (381)
Q Consensus 198 PLtPeEvgl~LralGf~~~T~IYlA~g~iygg~~~l~~L~~~fP~l--~tKe~L~-~~~eL~~f~~~s~~~aAlDy~V~~ 274 (381)
-..|+....+..+.||||+-+ ...++-+++.||+. ++-.... +...-..+...+...+.+|.++.+
T Consensus 328 -------~~~l~~~~~~~~~~ifLATDD----p~v~~e~k~~~p~~~~~~d~~~~~~a~~~~R~s~~~l~~~l~DL~lLs 396 (526)
T 2de0_X 328 -------FQLLARRMQVDKKRVYLATDD----PSLLKEAKTKYPNYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLS 396 (526)
T ss_dssp -------HHHHHTTSCCSSCEEEEEESC----HHHHHHHHHHCTTSEEECCCCSSCSSGGGGGTCCTHHHHHHHHHHHHH
T ss_pred -------HHHHHhhcCCCCCeEEEEcCC----HHHHHHHHHhCCCCEEecCcccccccCccccccHHHHHHHHHHHHHHh
Confidence 011233346788999999988 55567788889985 3221111 111111111123467889999999
Q ss_pred cCceeeeCCCCchhHhHhHhhhhcC
Q 043543 275 ESDVFIPSHSGNMARAVEGHRRFLG 299 (381)
Q Consensus 275 ~SDvFv~t~~Gnf~~~v~GhR~y~G 299 (381)
++|+||+|.++||++++...+.-.+
T Consensus 397 ~cd~~Vgt~sS~~srla~~l~~~~~ 421 (526)
T 2de0_X 397 QADFLVCTFSSQVCRVAYEIMQTLH 421 (526)
T ss_dssp HSSEEEECTTSHHHHHHHHHHTTSS
T ss_pred cCCeeecCCCCHHHHHHHHHhcCcC
Confidence 9999999999999999888775444
No 4
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=95.14 E-value=0.053 Score=51.85 Aligned_cols=144 Identities=14% Similarity=0.176 Sum_probs=77.9
Q ss_pred hhhcccccccchHHHHHHHHHHHHHhcCCCeEEEeccchhhhHhhhcCCCCCChhHHHHHHHHHhhccccccccCCchhh
Q 043543 112 RALYYALRFSPPIEILGEKLVERLRSLGGRYIALHLRYEKDMLSFTGCTYGLTDAESKELTIMRENTNHWKVKKINSTEQ 191 (381)
Q Consensus 112 r~nf~ALrF~p~I~~lg~~lV~Rlr~~g~pfiAlHLR~E~Dmla~sgC~~g~~~~e~~eL~~~R~~~~~w~~k~i~~~~~ 191 (381)
...|.-|+++++|++..+.+.+.+-. +.++|++|.|.=.+. ..|.++. .|.+.
T Consensus 142 ~~i~~yl~p~~~i~~~i~~~~~~~~~-~~~~VGVHIRrgD~~---~~~~~~~----------------~~~~~------- 194 (330)
T 2hhc_A 142 RLIFRNIKLRSEIRARIDALYEEHFS-GHSIIGVHVRHGNGE---DIMEHAP----------------YWADS------- 194 (330)
T ss_dssp HHHHHHSCBCHHHHHHHHHHHHHHTT-TSEEEEEEECC-------------------------------CHHH-------
T ss_pred HHHHhcCCccHHHHHHHHHHHHHhcc-CCceEEEEEecCCCC---cccccCc----------------chHHH-------
Confidence 34457889999999999888765423 359999999964321 1233211 01100
Q ss_pred hcCCCCCCCHHHHHHHHHHh-C-CC-CCcEEEEeeccccCCcccchHHHHhCCCccccc-ccCCH--HHHH-HHH-hhhh
Q 043543 192 RIGGYCPLTPKEVGIFLQAL-G-YP-PSTIIYIAAGEIYGGNTHLSELMYRFPNLVFKE-TLATK--EELK-AFA-NHAS 263 (381)
Q Consensus 192 R~~G~CPLtPeEvgl~Lral-G-f~-~~T~IYlA~g~iygg~~~l~~L~~~fP~l~tKe-~L~~~--~eL~-~f~-~~s~ 263 (381)
.|| -++.-.-++.+ . .+ .++.||||+-+. ..++-|++.||++.+-. .+... ..+. +.. ..+.
T Consensus 195 ----~~~--l~~~~~~i~~~~~~~~~~~~~vfvaSDd~----~~~~~lk~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 264 (330)
T 2hhc_A 195 ----ELA--LHQVCMAIRKAKALSYPKPVKVFLCTDSA----QVLDQVSGLFPDVFAVPKRFQADRAGPLHSAEMGIEGG 264 (330)
T ss_dssp ----HHH--HHHHHHHHHHHHTSCCSSCEEEEEEESCH----HHHHHHHHHSTTEECCCC-----------CHHHHHHHH
T ss_pred ----hHH--HHHHHHHHHHHHhccCcCceEEEEEeCCH----HHHHHHHHHcCCcccccceeecccccccccCchhhccc
Confidence 011 11111111111 1 22 468999999883 34778999999853321 11100 0000 000 1235
Q ss_pred hhhhhhheecccCceee-eCCCCchhHhHh
Q 043543 264 QTAALDYLISVESDVFI-PSHSGNMARAVE 292 (381)
Q Consensus 264 ~~aAlDy~V~~~SDvFv-~t~~Gnf~~~v~ 292 (381)
..+.+|.+..+.+|.+| .+..++|+...+
T Consensus 265 ~~~~~Dm~LLS~cd~~I~~~~~STFs~~aa 294 (330)
T 2hhc_A 265 ASALIDMYLLARCATVIRFPPTSAFTRYAR 294 (330)
T ss_dssp HHHHHHHHHHTTCSEEEEESTTCGGGHHHH
T ss_pred hHHHHHHHHHHcCCeeEECCCCCCHHHHHH
Confidence 67889999999999999 544777876555
No 5
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=50.46 E-value=4.3 Score=30.26 Aligned_cols=46 Identities=22% Similarity=0.388 Sum_probs=32.5
Q ss_pred cccchHHHHhCCCcccccccCCHHHHHHHH--hhhhhhhhhhheecccCceeeeC
Q 043543 230 NTHLSELMYRFPNLVFKETLATKEELKAFA--NHASQTAALDYLISVESDVFIPS 282 (381)
Q Consensus 230 ~~~l~~L~~~fP~l~tKe~L~~~~eL~~f~--~~s~~~aAlDy~V~~~SDvFv~t 282 (381)
+..++-|++|||++ +++. ++... +..+..+|||-......+-|=|+
T Consensus 10 ee~l~~L~emFP~l-d~~~------I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 10 EEDLKAIQDMFPNM-DQEV------IRSVLEAQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp HHHHHHHHHHCSSS-CHHH------HHHHHTTTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HHHHHHHHHHCCCC-CHHH------HHHHHHHcCCCHHHHHHHHHcCcCCCCCCC
Confidence 56688999999998 4433 33332 34579999999888877766554
No 6
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=50.22 E-value=5.5 Score=29.46 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=21.3
Q ss_pred cchHHHHhCCCcccccccCCHHHHHHHHhhhhhhhhhhheec
Q 043543 232 HLSELMYRFPNLVFKETLATKEELKAFANHASQTAALDYLIS 273 (381)
Q Consensus 232 ~l~~L~~~fP~l~tKe~L~~~~eL~~f~~~s~~~aAlDy~V~ 273 (381)
.+..|++|||++ +++.+- +-| ..+.+...+|||-...
T Consensus 15 ~~~~L~~MFP~l-D~evI~--~Vl--~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 15 TLNTLQNMFPDM-DPSLIE--DVC--IAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHSTTS-CHHHHH--HHH--HHSCC--CGGGC----
T ss_pred HHHHHHHHcccC-CHHHHH--HHH--HHcCCCHHHHHHHHHh
Confidence 478899999999 666551 122 2456788888887654
No 7
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=36.41 E-value=2.9 Score=41.70 Aligned_cols=44 Identities=23% Similarity=0.353 Sum_probs=30.9
Q ss_pred EeeeecccceEeccccCCCCccCCCC---CCCCCcChHHHHHhccCCeEEecc
Q 043543 2 VAVAHIMNATLVIPQLDKRSFWKDSS---TFSDMFDEVHFIKTLRGDLRIAKE 51 (381)
Q Consensus 2 V~vAR~LNATLVlP~l~~~s~w~D~S---~F~dIfD~d~Fi~~L~~dVrIvk~ 51 (381)
.+.|+.||.|||||-+-. |-+-.+ .|++-|+++. |+..-|||.-
T Consensus 31 LafAk~lnRTLvlPpwi~--y~~~~~~~vpf~~yF~v~~----l~~yhrvi~m 77 (362)
T 3zy2_A 31 LAFAKALDRTLVLPNFIE--FKHPETKMIPFEFLFQVGT----VAKYTRVVTM 77 (362)
T ss_dssp HHHHHHHTCEEECCCEEE--CSSSSCEEECHHHHBCHHH----HTTTSCEECH
T ss_pred HHHHHhhCceEecCcccc--ccCCcccccchhheeecch----hhhhceeeeH
Confidence 357999999999998753 222224 5889999875 5556677754
No 8
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB: 1l5i_A
Probab=29.99 E-value=52 Score=27.72 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=22.9
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCcEEEEeecc
Q 043543 195 GYCPLTPKEVGIFLQALGYPPSTIIYIAAGE 225 (381)
Q Consensus 195 G~CPLtPeEvgl~LralGf~~~T~IYlA~g~ 225 (381)
=.|||++||+...|+.|--+. ...||...+
T Consensus 16 p~c~l~Ke~~l~~l~~l~~p~-~~~yi~i~r 45 (118)
T 1l2m_A 16 PKCDLTKENALSQITNLQTPT-NKLFIKICR 45 (118)
T ss_dssp TTCCCCHHHHHHHHHHCCCSS-CEEEEEEEE
T ss_pred CCCCCCHHHHHHHHHhhcCCc-ceeeeeehh
Confidence 379999999999999987554 356665554
No 9
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=28.26 E-value=11 Score=31.22 Aligned_cols=49 Identities=20% Similarity=0.247 Sum_probs=28.4
Q ss_pred CCC--chhHhHhHhhhhcCCCceeccChhhHH---HHhhhhcCCCCCCCchHHHHHHHHH
Q 043543 283 HSG--NMARAVEGHRRFLGHRKTITPDRRGLV---ELFDKLKSGKLREGPSFSQRVQQIH 337 (381)
Q Consensus 283 ~~G--nf~~~v~GhR~y~G~~kti~Pdrk~l~---~l~~~~~~~~~~~w~~f~~~v~~~h 337 (381)
.+| ++.-.+...+.... .+....+. ..||.-.+|.++ +++|...+..++
T Consensus 69 ~~g~i~~~Ef~~~~~~~~~-----~~~~~~~~~~f~~~D~d~~G~i~-~~e~~~~~~~~~ 122 (183)
T 1s6c_A 69 QTGSVKFEDFVTALSILLR-----GTVHEKLRWTFNLYDINKDGYIN-KEEMMDIVKAIY 122 (183)
T ss_dssp CSSCEEHHHHHHHHHHHHH-----CCHHHHHHHHHHHHCTTCSSCEE-HHHHHHHHHHHH
T ss_pred CCCcEeHHHHHHHHHHHcC-----CCHHHHHHHHHHHhCCCCCCeEc-HHHHHHHHHHHH
Confidence 455 55555555443321 12233444 445555588996 999999887753
No 10
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.73 E-value=15 Score=28.08 Aligned_cols=42 Identities=24% Similarity=0.404 Sum_probs=26.5
Q ss_pred cccchHHHHhCCCcccccccCCHHHHHHHHhhhhhhhhhhheecccC
Q 043543 230 NTHLSELMYRFPNLVFKETLATKEELKAFANHASQTAALDYLISVES 276 (381)
Q Consensus 230 ~~~l~~L~~~fP~l~tKe~L~~~~eL~~f~~~s~~~aAlDy~V~~~S 276 (381)
+..++-|++|||++ +++.+ ..-|. .+..+..+|||-+.....
T Consensus 19 ~~~v~~L~~MFP~l-D~~vI--~~vL~--a~~G~vd~aId~LL~ms~ 60 (67)
T 2dhy_A 19 NQAMDDFKTMFPNM-DYDII--ECVLR--ANSGAVDATIDQLLQMNL 60 (67)
T ss_dssp HHHHHHHHHHCSSS-CHHHH--HHHHH--HHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCC-CHHHH--HHHHH--HcCCCHHHHHHHHHhcCC
Confidence 34578899999998 44444 12222 234578888887665443
No 11
>2g7j_A Putative cytoplasmic protein; STR72, autostructure, structural genomics, PSI, protein STRU initiative; NMR {Salmonella typhimurium} SCOP: d.198.5.1
Probab=25.56 E-value=25 Score=29.68 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHhCCCCCc
Q 043543 199 LTPKEVGIFLQALGYPPST 217 (381)
Q Consensus 199 LtPeEvgl~LralGf~~~T 217 (381)
|-|.||+.+|...||..|.
T Consensus 3 LRPDEVArVLEk~GF~~D~ 21 (124)
T 2g7j_A 3 LRPDEVARVLEKAGFTVDV 21 (124)
T ss_dssp CCHHHHHHHHHHTTCEEEE
T ss_pred cChHHHHHHHHHcCceEEE
Confidence 6799999999999998653
No 12
>3if4_A Integron cassette protein HFX_CASS5; integron cassette protein mobIle metagenome structural genomics PSI-2 protein structure initiative midwest center for structural genomics; HET: MSE; 2.18A {Unidentified}
Probab=24.57 E-value=66 Score=26.89 Aligned_cols=43 Identities=19% Similarity=0.277 Sum_probs=31.2
Q ss_pred ccccccccchhhHHhHHHhhhccEEEEeecCCccccCCCChhHHH
Q 043543 64 KHFTSWSGVGYYEEMTQLFKEYQVIHVAKSDSRLANNDLPLDIQR 108 (381)
Q Consensus 64 ~~p~~~s~~~yy~~ilp~l~k~~Vi~l~~~~~rla~~~lp~~iq~ 108 (381)
-.|.-|+-.+|+++|+-.-.+.|+=-....+-+-. | +|+++..
T Consensus 69 P~PREWsy~~W~~qI~~aA~~qg~~Lvl~~~T~Wv-N-I~~~Lk~ 111 (119)
T 3if4_A 69 PVPREWSYAQWLQQIFAAASEQGVKLVLGPNTRWV-N-VPNELRA 111 (119)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTTCEEECCTTCEEE-S-CCHHHHH
T ss_pred CCCccccHHHHHHHHHHHHHhcCceEEecCCceEE-e-CCHHHHH
Confidence 45788999999999999999977655544455544 3 6877654
No 13
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.07 E-value=51 Score=23.95 Aligned_cols=18 Identities=22% Similarity=0.080 Sum_probs=16.6
Q ss_pred CCCCCCCHHHHHHHHHHh
Q 043543 194 GGYCPLTPKEVGIFLQAL 211 (381)
Q Consensus 194 ~G~CPLtPeEvgl~Lral 211 (381)
....|.|++|..+|++++
T Consensus 10 ~~~~~WT~eE~~~F~~~~ 27 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKF 27 (61)
T ss_dssp SCCCSCCHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHH
Confidence 677899999999999998
No 14
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=22.79 E-value=31 Score=24.53 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=19.1
Q ss_pred cccccchHHHHHHHHHHHHHhcC
Q 043543 117 ALRFSPPIEILGEKLVERLRSLG 139 (381)
Q Consensus 117 ALrF~p~I~~lg~~lV~Rlr~~g 139 (381)
|+-|+.=+.++|.++|.||++-.
T Consensus 2 ~vpfQs~LD~vG~qiVrkmKtGe 24 (45)
T 3l32_A 2 NLLFQSYLDNVGVQIVRQMRSGE 24 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CccHHHHHHHHHHHHHHHHHccc
Confidence 45577789999999999999854
No 15
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Probab=22.23 E-value=32 Score=30.14 Aligned_cols=117 Identities=16% Similarity=0.262 Sum_probs=64.6
Q ss_pred CCCCHHHHHHHHHHhCCCCCcEEEEeeccccCCcccchHHHHhCCCcccccccCCHHHHHHHHhh----hhhhhhhhhee
Q 043543 197 CPLTPKEVGIFLQALGYPPSTIIYIAAGEIYGGNTHLSELMYRFPNLVFKETLATKEELKAFANH----ASQTAALDYLI 272 (381)
Q Consensus 197 CPLtPeEvgl~LralGf~~~T~IYlA~g~iygg~~~l~~L~~~fP~l~tKe~L~~~~eL~~f~~~----s~~~aAlDy~V 272 (381)
++++|+++..+.+..+|+. ..+..|.+.|-. .++...++.+|+..+... .....-++-+.
T Consensus 45 ~~~~~~~l~~l~~~~~~s~---------------~ei~~l~~~F~~-~d~~G~Is~~ef~~~l~~~~~~~~~~~~~~~lf 108 (229)
T 3dd4_A 45 VRHRPEALELLEAQSKFTK---------------KELQILYRGFKN-ECPSGVVNEETFKEIYSQFFPQGDSTTYAHFLF 108 (229)
T ss_dssp STTHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHT-TCCSCCCCHHHHHHHHHHHSCSSSHHHHHHHHH
T ss_pred ccCCHHHHHHHHHhcCCCH---------------HHHHHHHHHHHh-hCCCCCcCHHHHHHHHHHHCCCCCcHHHHHHHH
Confidence 4477888777777766642 235566666644 366667778887776432 11111111111
Q ss_pred cccCceeeeCCCC--chhHhHhHhhhhcCCCceeccChhhHHHHhhhhcCCCCCCCchHHHHHHHH
Q 043543 273 SVESDVFIPSHSG--NMARAVEGHRRFLGHRKTITPDRRGLVELFDKLKSGKLREGPSFSQRVQQI 336 (381)
Q Consensus 273 ~~~SDvFv~t~~G--nf~~~v~GhR~y~G~~kti~Pdrk~l~~l~~~~~~~~~~~w~~f~~~v~~~ 336 (381)
. .|=.+.+| +|.-.+.+-..+.... ..-.=+.+-..||.-.+|.++ .++|...++.+
T Consensus 109 ~----~~D~d~~G~I~~~Ef~~~l~~~~~~~--~~~~l~~~F~~~D~d~dG~Is-~~E~~~~l~~~ 167 (229)
T 3dd4_A 109 N----AFDTDHNGAVSFEDFIKGLSILLRGT--VQEKLNWAFNLYDINKDGYIT-KEEMLDIMKAI 167 (229)
T ss_dssp H----TTCSSCCSSCCHHHHHHHHHHHHHSC--HHHHHHHHHHHHCTTCSSCCB-HHHHHHHHHHH
T ss_pred H----HcCCCCCCeEeHHHHHHHHHHHcCCC--hHHHHHHHHHHhCCCCCCeEC-HHHHHHHHHHH
Confidence 1 12234566 6676666655443110 001113344556666689996 99999988775
No 16
>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A
Probab=22.14 E-value=38 Score=27.91 Aligned_cols=47 Identities=19% Similarity=0.301 Sum_probs=22.2
Q ss_pred HHHHHHHh--CCCCCcEEEEeeccccCCcccchHHHHhCCCcccccccCCHHHHHHHHh
Q 043543 204 VGIFLQAL--GYPPSTIIYIAAGEIYGGNTHLSELMYRFPNLVFKETLATKEELKAFAN 260 (381)
Q Consensus 204 vgl~Lral--Gf~~~T~IYlA~g~iygg~~~l~~L~~~fP~l~tKe~L~~~~eL~~f~~ 260 (381)
+..+|+.| ||+ .||+-.|- +..|++.||.+.+......+.++..|..
T Consensus 100 ~~~~L~~l~~G~~---~v~~L~GG-------~~~W~~~~~~~~~~~~~~~p~~~~~~~~ 148 (153)
T 2vsw_A 100 LTVLLGKLEKSFN---SVHLLAGG-------FAEFSRCFPGLCEGKSTLVPTCISQPAH 148 (153)
T ss_dssp HHHHHHHHHHHCS---CEEEETTH-------HHHHHHHCGGGEEC--------------
T ss_pred HHHHHHHHHhCCC---cEEEEeCh-------HHHHHHhChhhhcCCCCcCCCCCCCccc
Confidence 46777766 884 45554444 5678888888877666656666666654
Done!