Query 043543
Match_columns 381
No_of_seqs 150 out of 364
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 10:05:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043543.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043543hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wgla_ a.5.2.4 (A:) Toll-inte 48.6 2.2 0.00016 30.3 0.6 49 230-283 10-58 (59)
2 d1l5ia_ d.89.1.4 (A:) DNA-bind 37.2 16 0.0011 29.0 4.1 29 196-225 17-45 (118)
3 d1f54a_ a.39.1.5 (A:) Calmodul 36.9 15 0.0011 25.4 3.7 17 199-215 27-43 (77)
4 d2ihoa2 d.3.1.18 (A:156-293) A 27.6 2.2 0.00016 34.6 -2.7 35 11-45 31-70 (138)
5 d1wdcc_ a.39.1.5 (C:) Myosin R 26.1 17 0.0013 27.9 2.6 17 199-215 26-42 (152)
6 d2g7ja1 d.198.5.1 (A:1-112) Pu 26.1 12 0.00084 29.2 1.4 18 199-216 3-20 (112)
7 d1oqya2 a.5.2.1 (A:317-360) DN 22.3 6.3 0.00046 26.4 -0.7 26 200-225 1-30 (44)
8 d1jjcb2 a.6.1.1 (B:400-474) Do 22.0 23 0.0017 25.2 2.4 23 191-214 13-35 (75)
9 d1wrka1 a.39.1.5 (A:4-85) Trop 20.4 46 0.0033 23.4 3.8 19 196-215 31-49 (82)
10 d2a4ka1 c.2.1.2 (A:2-242) beta 18.8 1.7E+02 0.012 23.9 8.0 114 76-225 119-238 (241)
No 1
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.60 E-value=2.2 Score=30.31 Aligned_cols=49 Identities=24% Similarity=0.381 Sum_probs=33.3
Q ss_pred cccchHHHHhCCCcccccccCCHHHHHHHHhhhhhhhhhhheecccCceeeeCC
Q 043543 230 NTHLSELMYRFPNLVFKETLATKEELKAFANHASQTAALDYLISVESDVFIPSH 283 (381)
Q Consensus 230 ~~~l~~L~~~fP~l~tKe~L~~~~eL~~f~~~s~~~aAlDy~V~~~SDvFv~t~ 283 (381)
+..+.-|++|||++ +++.+- .-|. .+..+..+|+|=..-..-+.|-|+.
T Consensus 10 Ee~i~~LkeMFP~~-D~~vI~--~VL~--a~~G~vd~aid~LL~Msd~~~gp~s 58 (59)
T d1wgla_ 10 EEDLKAIQDMFPNM-DQEVIR--SVLE--AQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHHCSSS-CHHHHH--HHHT--TTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHHCCCC-CHHHHH--HHHH--HcCCCHHHHHHHHHhcCCCCcCCCC
Confidence 45688999999999 444431 1111 2456888999988887777776653
No 2
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=37.24 E-value=16 Score=29.01 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=22.6
Q ss_pred CCCCCHHHHHHHHHHhCCCCCcEEEEeecc
Q 043543 196 YCPLTPKEVGIFLQALGYPPSTIIYIAAGE 225 (381)
Q Consensus 196 ~CPLtPeEvgl~LralGf~~~T~IYlA~g~ 225 (381)
+|||||||+...|+.|--+.+. .||..++
T Consensus 17 ~C~l~ke~~l~~l~~l~~p~~~-~~i~v~r 45 (118)
T d1l5ia_ 17 KCDLTKENALSQITNLQTPTNK-LFIKICR 45 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSCE-EEEEEEE
T ss_pred CCCCCHHHHHHHHHHhcCCcce-eEEEEcc
Confidence 6999999999999998665444 5666554
No 3
>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=36.93 E-value=15 Score=25.43 Aligned_cols=17 Identities=24% Similarity=0.671 Sum_probs=14.5
Q ss_pred CCHHHHHHHHHHhCCCC
Q 043543 199 LTPKEVGIFLQALGYPP 215 (381)
Q Consensus 199 LtPeEvgl~LralGf~~ 215 (381)
++++|+..+|+.+|+..
T Consensus 27 I~~~el~~~l~~~g~~~ 43 (77)
T d1f54a_ 27 ISSSELATVMRSLGLSP 43 (77)
T ss_dssp EEHHHHHHHHHHHTCCC
T ss_pred EChHHHHHHHHHhCCCC
Confidence 88999999999988874
No 4
>d2ihoa2 d.3.1.18 (A:156-293) Agglutinin MOA {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]}
Probab=27.60 E-value=2.2 Score=34.59 Aligned_cols=35 Identities=26% Similarity=0.471 Sum_probs=28.6
Q ss_pred eEeccccCCCCccCCCC-----CCCCCcChHHHHHhccCC
Q 043543 11 TLVIPQLDKRSFWKDSS-----TFSDMFDEVHFIKTLRGD 45 (381)
Q Consensus 11 TLVlP~l~~~s~w~D~S-----~F~dIfD~d~Fi~~L~~d 45 (381)
-||+|...-++.|++|- .=+.|||-|.|--..+.-
T Consensus 31 YLVLp~~~~s~IWk~SGL~~t~~R~~I~D~DdFA~~~KaA 70 (138)
T d2ihoa2 31 YLVLPNATFTQIWKDSGLPGSKWREQIYDCDDFAIAMKAA 70 (138)
T ss_dssp EECCCHHHHHHHHHTTTCTTCCCBTTTBCHHHHHHHHHHH
T ss_pred EEEechHHHHHHHhccCCCCCcccccccccHHHHHHHHHH
Confidence 48999999999999862 457899999998766543
No 5
>d1wdcc_ a.39.1.5 (C:) Myosin Regulatory Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}
Probab=26.07 E-value=17 Score=27.88 Aligned_cols=17 Identities=24% Similarity=0.428 Sum_probs=15.4
Q ss_pred CCHHHHHHHHHHhCCCC
Q 043543 199 LTPKEVGIFLQALGYPP 215 (381)
Q Consensus 199 LtPeEvgl~LralGf~~ 215 (381)
++++|...+|++||+..
T Consensus 26 I~~~el~~~l~~lG~~~ 42 (152)
T d1wdcc_ 26 VDAFKLGDVCRCLGINP 42 (152)
T ss_dssp EEGGGHHHHHHHTTCCC
T ss_pred ECHHHHHHHHHHhccCc
Confidence 89999999999999874
No 6
>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC {Salmonella typhimurium [TaxId: 90371]}
Probab=26.06 E-value=12 Score=29.18 Aligned_cols=18 Identities=33% Similarity=0.588 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHhCCCCC
Q 043543 199 LTPKEVGIFLQALGYPPS 216 (381)
Q Consensus 199 LtPeEvgl~LralGf~~~ 216 (381)
|-|.||+.+|+..||..+
T Consensus 3 LRPDEVArVLe~aGF~~d 20 (112)
T d2g7ja1 3 LRPDEVARVLEKAGFTVD 20 (112)
T ss_dssp CCHHHHHHHHHHTTCEEE
T ss_pred cChHHHHHHHHHcCceEE
Confidence 679999999999999754
No 7
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.29 E-value=6.3 Score=26.40 Aligned_cols=26 Identities=42% Similarity=0.691 Sum_probs=18.7
Q ss_pred CHHHHHHH--HHHhCCCCCc--EEEEeecc
Q 043543 200 TPKEVGIF--LQALGYPPST--IIYIAAGE 225 (381)
Q Consensus 200 tPeEvgl~--LralGf~~~T--~IYlA~g~ 225 (381)
||+|..-+ |.+|||+++. ..|+|-.+
T Consensus 1 T~ee~~aIeRL~~LGF~r~~viqay~ACdK 30 (44)
T d1oqya2 1 TPQEKEAIERLKALGFPESLVIQAYFACEK 30 (44)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHHTSSSSS
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCc
Confidence 56665443 7799999987 46888766
No 8
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=22.03 E-value=23 Score=25.16 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=19.7
Q ss_pred hhcCCCCCCCHHHHHHHHHHhCCC
Q 043543 191 QRIGGYCPLTPKEVGIFLQALGYP 214 (381)
Q Consensus 191 ~R~~G~CPLtPeEvgl~LralGf~ 214 (381)
.+..|.. ++++|+..+|+.|||.
T Consensus 13 ~~~lG~~-i~~~~i~~~L~~Lg~~ 35 (75)
T d1jjcb2 13 NRLLGTS-YPEAEQIAILKRLGCR 35 (75)
T ss_dssp HHHHTCC-CCHHHHHHHHHHTTCE
T ss_pred HHHhCCC-CCHHHHHHHHHHcCCc
Confidence 3556766 9999999999999996
No 9
>d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}
Probab=20.37 E-value=46 Score=23.43 Aligned_cols=19 Identities=32% Similarity=0.578 Sum_probs=16.5
Q ss_pred CCCCCHHHHHHHHHHhCCCC
Q 043543 196 YCPLTPKEVGIFLQALGYPP 215 (381)
Q Consensus 196 ~CPLtPeEvgl~LralGf~~ 215 (381)
.| +++.|...+|++||++.
T Consensus 31 G~-I~~~el~~~l~~lg~~~ 49 (82)
T d1wrka1 31 GS-ISTKELGKVMRMLGQNP 49 (82)
T ss_dssp SS-BCHHHHHHHHHHTTCCC
T ss_pred Ce-EeHHHHHHHHHHcCCCC
Confidence 35 99999999999999875
No 10
>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}
Probab=18.81 E-value=1.7e+02 Score=23.91 Aligned_cols=114 Identities=18% Similarity=0.103 Sum_probs=69.9
Q ss_pred HHhHHHhhhccEEEEeecCCccccCCCChhHHHHhhhhhcccccccchHHHHHHHHHHHHHhcCCCeEEEeccc-hhhhH
Q 043543 76 EEMTQLFKEYQVIHVAKSDSRLANNDLPLDIQRLRCRALYYALRFSPPIEILGEKLVERLRSLGGRYIALHLRY-EKDML 154 (381)
Q Consensus 76 ~~ilp~l~k~~Vi~l~~~~~rla~~~lp~~iq~LRCr~nf~ALrF~p~I~~lg~~lV~Rlr~~g~pfiAlHLR~-E~Dml 154 (381)
+.++|.+++.+.|.+....+... .| . ...|.+= .--++.+...|..-+...|-+.-+++..+ +-+|+
T Consensus 119 k~~~~~~~~~~~i~~~ss~a~~~---~~-~------~~~Y~~s--K~al~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~ 186 (241)
T d2a4ka1 119 RKAGEVLEEGGSLVLTGSVAGLG---AF-G------LAHYAAG--KLGVVGLARTLALELARKGVRVNVLLPGLIQTPMT 186 (241)
T ss_dssp HHHHHHCCTTCEEEEECCCTTCC---HH-H------HHHHHHC--SSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGG
T ss_pred cccccccccccceeecccccccc---cc-C------ccccchh--hHHHHHHHHHHHHHHhHhCCEEeeeccCcCCCHHH
Confidence 88899999999888766544322 12 1 1235544 33578888899998988888888888866 33454
Q ss_pred hhhcCCCCCChhHHHHHHHHHhhccccccccCCchhhhcCCCCCCCHHHHHHHHH-----HhCCCCCcEEEEeecc
Q 043543 155 SFTGCTYGLTDAESKELTIMRENTNHWKVKKINSTEQRIGGYCPLTPKEVGIFLQ-----ALGYPPSTIIYIAAGE 225 (381)
Q Consensus 155 a~sgC~~g~~~~e~~eL~~~R~~~~~w~~k~i~~~~~R~~G~CPLtPeEvgl~Lr-----alGf~~~T~IYlA~g~ 225 (381)
. +..++. .+++... .+ -+.-.+|+||+-+.. .-.|=+-+.|++-+|.
T Consensus 187 ~------~~~~~~---~~~~~~~---------~p------~~r~~~p~dva~~v~fL~S~~s~~itG~~i~vDGG~ 238 (241)
T d2a4ka1 187 A------GLPPWA---WEQEVGA---------SP------LGRAGRPEEVAQAALFLLSEESAYITGQALYVDGGR 238 (241)
T ss_dssp T------TSCHHH---HHHHHHT---------ST------TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred H------hhhHhH---HHHHHhC---------CC------CCCCcCHHHHHHHHHHHhcchhCCCcCceEEeCCCc
Confidence 3 122222 2222210 00 011249999876554 3457777888888775
Done!