BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043544
(619 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JBM|A Chain A, Qprtase Structure From Human
pdb|2JBM|B Chain B, Qprtase Structure From Human
pdb|2JBM|C Chain C, Qprtase Structure From Human
pdb|2JBM|D Chain D, Qprtase Structure From Human
pdb|2JBM|E Chain E, Qprtase Structure From Human
pdb|2JBM|F Chain F, Qprtase Structure From Human
pdb|2JBM|G Chain G, Qprtase Structure From Human
pdb|2JBM|H Chain H, Qprtase Structure From Human
pdb|2JBM|I Chain I, Qprtase Structure From Human
pdb|2JBM|J Chain J, Qprtase Structure From Human
pdb|2JBM|K Chain K, Qprtase Structure From Human
pdb|2JBM|L Chain L, Qprtase Structure From Human
Length = 299
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 151 LPPVNYSAVVDLRLRRDAPAENYLSLMNNNRTETVHFWDK 190
LPPV +A+VD LR D P NY +L++ W K
Sbjct: 12 LPPVTLAALVDSWLREDCPGLNYAALVSGAGPSQAALWAK 51
>pdb|3LAR|A Chain A, Crystal Structure Of Human Quinolinate
Phosphoribosyltransferase
pdb|3LAR|B Chain B, Crystal Structure Of Human Quinolinate
Phosphoribosyltransferase
pdb|3LAR|C Chain C, Crystal Structure Of Human Quinolinate
Phosphoribosyltransferase
pdb|3LAR|D Chain D, Crystal Structure Of Human Quinolinate
Phosphoribosyltransferase
pdb|3LAR|E Chain E, Crystal Structure Of Human Quinolinate
Phosphoribosyltransferase
pdb|3LAR|F Chain F, Crystal Structure Of Human Quinolinate
Phosphoribosyltransferase
Length = 305
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 151 LPPVNYSAVVDLRLRRDAPAENYLSLMNNNRTETVHFWDK 190
LPPV +A+VD LR D P NY +L++ W K
Sbjct: 10 LPPVTLAALVDSWLREDCPGLNYAALVSGAGPSQAALWAK 49
>pdb|3BTZ|A Chain A, Crystal Structure Of Human Abh2 Cross-Linked To Dsdna
Length = 202
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 14/91 (15%)
Query: 432 RDHRLGLLGENSLRSLVANFS-SSKTVAEIRTSCHSFGPSGLSSHPAQGVTVGYT----- 485
RDH G+ G+ L+ + S + E R C P P V+ G +
Sbjct: 86 RDHVSGVTGQTFNFVLINRYKDGSDHIGEHRDDCRELAPGS----PIASVSFGASRDFVF 141
Query: 486 ----CRLQSPERHKSIVRPDLLNSSLLNVVH 512
R +SP R ++VR L + SLL + H
Sbjct: 142 RHKDSRGKSPSRRVAVVRLPLAHGSLLMMNH 172
>pdb|3BTX|A Chain A, X-Ray Structure Of Human Abh2 Bound To Dsdna Through
Active Site Cross-Linking
Length = 204
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 14/91 (15%)
Query: 432 RDHRLGLLGENSLRSLVANFS-SSKTVAEIRTSCHSFGPSGLSSHPAQGVTVGYT----- 485
RDH G+ G+ L+ + S + E R C P P V+ G +
Sbjct: 88 RDHVSGVTGQTFNFVLINRYKDGSDHIGEHRDDCRELAPGS----PIASVSFGASRDFVF 143
Query: 486 ----CRLQSPERHKSIVRPDLLNSSLLNVVH 512
R +SP R ++VR L + SLL + H
Sbjct: 144 RHKDSRGKSPSRRVAVVRLPLAHGSLLMMNH 174
>pdb|3BU0|A Chain A, Crystal Structure Of Human Abh2 Cross-Linked To Dsdna With
Cofactors
Length = 203
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 14/91 (15%)
Query: 432 RDHRLGLLGENSLRSLVANFS-SSKTVAEIRTSCHSFGPSGLSSHPAQGVTVGYT----- 485
RDH G+ G+ L+ + S + E R C P P V+ G +
Sbjct: 87 RDHVSGVTGQTFNFVLINRYKDGSDHIGEHRDDCRELAPGS----PIASVSFGASRDFVF 142
Query: 486 ----CRLQSPERHKSIVRPDLLNSSLLNVVH 512
R +SP R ++VR L + SLL + H
Sbjct: 143 RHKDSRGKSPSRRVAVVRLPLAHGSLLMMNH 173
>pdb|3H8O|A Chain A, Structure Determination Of Dna Methylation Lesions N1-mea
And N3-mec In Duplex Dna Using A Cross-linked Host-guest
System
pdb|3H8R|A Chain A, Structure Determination Of Dna Methylation Lesions N1-Mea
And N3-Mec In Duplex Dna Using A Cross-Linked Host-Guest
System
pdb|3H8X|A Chain A, Structure Determination Of Dna Methylation Lesions N1-Mea
And N3-Mec In Duplex Dna Using A Cross-Linked Host-Guest
System
Length = 209
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 14/91 (15%)
Query: 432 RDHRLGLLGENSLRSLVANFS-SSKTVAEIRTSCHSFGPSGLSSHPAQGVTVGYT----- 485
RDH G+ G+ L+ + S + E R C P P V+ G +
Sbjct: 90 RDHVSGVTGQTFNFVLINRYKDGSDHIGEHRDDCRELAPGS----PIASVSFGASRDFVF 145
Query: 486 ----CRLQSPERHKSIVRPDLLNSSLLNVVH 512
R +SP R ++VR L + SLL + H
Sbjct: 146 RHKDSRGKSPSRRVAVVRLPLAHGSLLMMNH 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,825,720
Number of Sequences: 62578
Number of extensions: 698192
Number of successful extensions: 1144
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1142
Number of HSP's gapped (non-prelim): 10
length of query: 619
length of database: 14,973,337
effective HSP length: 105
effective length of query: 514
effective length of database: 8,402,647
effective search space: 4318960558
effective search space used: 4318960558
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)