Query 043544
Match_columns 619
No_of_seqs 241 out of 945
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 06:04:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043544.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043544hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01697 Glyco_transf_92: Glyc 99.9 9.1E-27 2E-31 237.5 17.5 203 334-542 2-238 (285)
2 PF13704 Glyco_tranf_2_4: Glyc 99.8 2.6E-18 5.5E-23 149.5 9.6 95 344-448 1-97 (97)
3 cd02511 Beta4Glucosyltransfera 99.5 1.3E-13 2.7E-18 137.4 16.5 189 337-567 2-192 (229)
4 PF00535 Glycos_transf_2: Glyc 98.7 4.3E-07 9.2E-12 82.3 13.4 103 338-450 1-105 (169)
5 cd04196 GT_2_like_d Subfamily 98.4 4.1E-06 8.9E-11 80.4 13.6 92 338-432 1-95 (214)
6 cd06439 CESA_like_1 CESA_like_ 98.4 1.1E-05 2.5E-10 80.2 16.3 117 332-464 26-146 (251)
7 COG0463 WcaA Glycosyltransfera 98.4 3.1E-06 6.8E-11 75.5 10.7 94 335-431 3-98 (291)
8 PRK10063 putative glycosyl tra 98.3 1.2E-05 2.7E-10 82.0 14.8 92 336-432 2-98 (248)
9 PRK10073 putative glycosyl tra 98.3 7.2E-06 1.6E-10 87.2 12.9 94 335-432 6-101 (328)
10 cd06433 GT_2_WfgS_like WfgS an 98.3 1.7E-05 3.8E-10 74.6 13.7 88 339-432 2-91 (202)
11 cd06427 CESA_like_2 CESA_like_ 98.2 1.7E-05 3.7E-10 79.3 13.5 91 336-428 2-97 (241)
12 cd04195 GT2_AmsE_like GT2_AmsE 98.2 2.4E-05 5.2E-10 75.0 13.4 87 339-428 2-93 (201)
13 PRK11204 N-glycosyltransferase 98.2 1.9E-05 4E-10 85.8 13.8 114 335-461 54-169 (420)
14 cd06423 CESA_like CESA_like is 98.1 4.4E-05 9.6E-10 68.9 13.2 87 340-428 2-91 (180)
15 TIGR03111 glyc2_xrt_Gpos1 puta 98.1 2.4E-05 5.1E-10 86.4 13.6 112 335-459 49-164 (439)
16 cd06442 DPM1_like DPM1_like re 98.1 1.4E-05 3.1E-10 77.6 10.4 87 340-428 2-91 (224)
17 PLN02726 dolichyl-phosphate be 98.1 2.6E-05 5.7E-10 78.3 12.3 94 333-428 7-106 (243)
18 cd04179 DPM_DPG-synthase_like 98.1 1.5E-05 3.3E-10 75.0 9.4 87 340-428 2-92 (185)
19 cd06421 CESA_CelA_like CESA_Ce 98.1 6.9E-05 1.5E-09 73.2 14.3 112 336-461 2-119 (234)
20 cd04185 GT_2_like_b Subfamily 98.1 2.2E-05 4.8E-10 75.5 10.7 88 340-428 2-92 (202)
21 cd06437 CESA_CaSu_A2 Cellulose 98.1 6.8E-05 1.5E-09 74.2 14.2 93 336-432 2-103 (232)
22 cd06434 GT2_HAS Hyaluronan syn 98.1 5.4E-05 1.2E-09 74.3 13.3 110 337-462 2-112 (235)
23 TIGR03469 HonB hopene-associat 98.1 3.1E-05 6.7E-10 83.9 12.6 108 334-452 39-159 (384)
24 cd04188 DPG_synthase DPG_synth 98.1 2E-05 4.4E-10 76.8 10.0 88 339-428 1-95 (211)
25 cd02525 Succinoglycan_BP_ExoA 98.0 3.7E-05 8.1E-10 75.5 11.5 92 337-432 2-97 (249)
26 cd04186 GT_2_like_c Subfamily 98.0 6.5E-05 1.4E-09 68.7 12.2 84 340-428 2-87 (166)
27 cd04192 GT_2_like_e Subfamily 98.0 3.6E-05 7.8E-10 74.6 10.7 100 340-452 2-108 (229)
28 PRK14583 hmsR N-glycosyltransf 98.0 7.6E-05 1.7E-09 82.4 14.2 115 335-462 75-191 (444)
29 cd04184 GT2_RfbC_Mx_like Myxoc 98.0 8.1E-05 1.8E-09 71.2 12.6 91 336-428 2-96 (202)
30 PTZ00260 dolichyl-phosphate be 98.0 6.5E-05 1.4E-09 80.3 12.9 94 333-428 68-175 (333)
31 cd02510 pp-GalNAc-T pp-GalNAc- 98.0 6.1E-05 1.3E-09 78.1 11.9 93 338-433 1-100 (299)
32 cd06436 GlcNAc-1-P_transferase 98.0 0.00011 2.4E-09 71.1 12.7 113 340-465 2-127 (191)
33 cd06435 CESA_NdvC_like NdvC_li 98.0 8.8E-05 1.9E-09 73.2 12.1 112 338-461 1-118 (236)
34 PRK10714 undecaprenyl phosphat 97.9 7.6E-05 1.6E-09 79.4 12.0 105 335-452 6-116 (325)
35 cd06913 beta3GnTL1_like Beta 1 97.9 6.8E-05 1.5E-09 73.5 10.7 90 340-432 2-100 (219)
36 cd06438 EpsO_like EpsO protein 97.9 8.9E-05 1.9E-09 70.9 10.7 99 340-452 2-107 (183)
37 cd02520 Glucosylceramide_synth 97.9 0.00015 3.3E-09 70.2 11.8 110 337-460 3-119 (196)
38 PRK10018 putative glycosyl tra 97.8 0.00022 4.8E-09 74.5 13.2 93 335-432 5-101 (279)
39 cd04187 DPM1_like_bac Bacteria 97.8 0.00012 2.6E-09 69.3 9.4 87 340-428 2-93 (181)
40 cd02526 GT2_RfbF_like RfbF is 97.8 0.00027 5.9E-09 69.4 12.1 85 340-428 2-88 (237)
41 PRK13915 putative glucosyl-3-p 97.8 0.00023 5E-09 75.3 11.9 91 333-427 29-127 (306)
42 KOG4735 Extracellular protein 97.7 4.3E-05 9.4E-10 84.8 5.5 194 333-537 194-408 (472)
43 TIGR03472 HpnI hopanoid biosyn 97.6 0.00059 1.3E-08 73.6 12.8 113 335-461 41-160 (373)
44 cd06420 GT2_Chondriotin_Pol_N 97.6 0.00064 1.4E-08 63.9 10.7 87 340-428 2-92 (182)
45 cd00761 Glyco_tranf_GTA_type G 97.4 0.0014 3.1E-08 57.6 10.8 87 340-428 2-90 (156)
46 PF13641 Glyco_tranf_2_3: Glyc 97.4 0.0005 1.1E-08 67.3 8.4 114 337-464 3-123 (228)
47 cd02522 GT_2_like_a GT_2_like_ 97.3 0.0011 2.5E-08 64.2 8.9 82 337-428 1-85 (221)
48 TIGR01556 rhamnosyltran L-rham 97.2 0.0022 4.9E-08 65.7 11.1 81 343-428 2-86 (281)
49 PRK11498 bcsA cellulose syntha 97.2 0.0032 7E-08 75.1 12.8 116 335-468 260-381 (852)
50 TIGR03030 CelA cellulose synth 96.8 0.012 2.5E-07 69.4 12.9 114 335-463 131-265 (713)
51 COG1216 Predicted glycosyltran 96.7 0.016 3.5E-07 60.7 12.1 115 335-462 3-120 (305)
52 COG1215 Glycosyltransferases, 96.5 0.031 6.6E-07 60.5 12.5 105 335-453 54-164 (439)
53 PRK14716 bacteriophage N4 adso 96.2 0.03 6.5E-07 63.5 11.2 96 334-429 65-172 (504)
54 PF06306 CgtA: Beta-1,4-N-acet 96.2 0.016 3.5E-07 61.7 8.1 98 331-429 83-189 (347)
55 PRK05454 glucosyltransferase M 96.0 0.065 1.4E-06 63.1 12.7 124 333-468 122-262 (691)
56 cd04190 Chitin_synth_C C-termi 95.9 0.054 1.2E-06 54.8 10.1 96 340-466 2-113 (244)
57 cd04191 Glucan_BSP_ModH Glucan 95.6 0.14 3.1E-06 52.9 11.9 120 338-469 2-138 (254)
58 KOG4735 Extracellular protein 93.9 0.62 1.3E-05 52.0 12.6 221 184-463 10-258 (472)
59 PF10111 Glyco_tranf_2_2: Glyc 93.9 0.45 9.7E-06 49.5 10.6 87 339-428 2-101 (281)
60 KOG2978 Dolichol-phosphate man 93.6 0.31 6.6E-06 49.0 8.2 103 338-453 6-115 (238)
61 cd02514 GT13_GLCNAC-TI GT13_GL 91.6 1.7 3.6E-05 47.3 11.3 113 337-462 2-136 (334)
62 KOG2977 Glycosyltransferase [G 91.5 0.9 1.9E-05 48.2 8.9 96 332-433 64-175 (323)
63 PRK11234 nfrB bacteriophage N4 90.0 1.6 3.6E-05 51.9 10.3 95 335-429 63-169 (727)
64 PF03452 Anp1: Anp1; InterPro 80.6 23 0.00049 37.6 12.0 109 332-450 22-167 (269)
65 PF11735 CAP59_mtransfer: Cryp 75.1 8.1 0.00018 40.2 6.8 48 335-384 2-56 (241)
66 PF04724 Glyco_transf_17: Glyc 73.0 70 0.0015 35.2 13.7 117 335-468 79-219 (356)
67 PRK15489 nfrB bacteriophage N4 64.4 43 0.00093 40.1 10.5 94 336-429 72-177 (703)
68 PF02485 Branch: Core-2/I-Bran 61.6 91 0.002 31.4 11.1 105 337-452 1-116 (244)
69 PF03314 DUF273: Protein of un 57.8 11 0.00023 38.7 3.5 39 403-450 28-67 (222)
70 PRK14503 mannosyl-3-phosphogly 54.4 70 0.0015 35.5 9.1 41 414-466 159-204 (393)
71 TIGR02460 osmo_MPGsynth mannos 53.4 76 0.0016 35.0 9.2 41 414-466 158-203 (381)
72 cd04181 NTP_transferase NTP_tr 50.0 63 0.0014 31.2 7.5 78 349-428 31-108 (217)
73 cd02515 Glyco_transf_6 Glycosy 48.9 63 0.0014 34.3 7.6 98 333-433 32-141 (271)
74 PRK14502 bifunctional mannosyl 40.3 1.4E+02 0.003 35.8 9.4 117 335-466 55-208 (694)
75 COG2943 MdoH Membrane glycosyl 38.8 1.7E+02 0.0037 34.2 9.4 116 333-461 142-275 (736)
76 PF09488 Osmo_MPGsynth: Mannos 37.7 1.3E+02 0.0028 33.4 8.0 117 336-466 51-203 (381)
77 KOG2882 p-Nitrophenyl phosphat 35.4 1.3E+02 0.0028 32.6 7.4 55 334-389 23-81 (306)
78 cd04194 GT8_A4GalT_like A4GalT 34.2 2.9E+02 0.0063 27.8 9.7 67 363-429 31-109 (248)
79 cd06915 NTP_transferase_WcbM_l 32.4 1.8E+02 0.0039 28.1 7.6 69 358-428 40-108 (223)
80 PF12804 NTP_transf_3: MobA-li 32.3 3.7E+02 0.0081 24.7 9.5 87 349-452 26-112 (160)
81 KOG0460 Mitochondrial translat 32.3 1.3E+02 0.0029 33.4 7.0 26 348-373 156-181 (449)
82 cd02540 GT2_GlmU_N_bac N-termi 31.5 1.6E+02 0.0035 28.9 7.1 89 349-452 28-116 (229)
83 PF13344 Hydrolase_6: Haloacid 30.9 1.1E+02 0.0023 27.3 5.2 40 350-390 19-58 (101)
84 cd04182 GT_2_like_f GT_2_like_ 29.8 1.9E+02 0.0041 27.0 7.1 90 348-452 26-117 (186)
85 PF08357 SEFIR: SEFIR domain; 25.6 76 0.0017 29.5 3.5 60 365-424 4-67 (150)
86 cd03174 DRE_TIM_metallolyase D 25.3 2.5E+02 0.0054 28.4 7.5 54 332-385 128-186 (265)
87 cd01175 IPT_COE IPT domain of 25.1 2.6E+02 0.0056 24.9 6.3 48 206-275 21-68 (85)
88 TIGR03202 pucB xanthine dehydr 23.2 5.4E+02 0.012 24.6 9.1 93 348-452 26-122 (190)
89 cd02517 CMP-KDO-Synthetase CMP 22.8 4.5E+02 0.0097 26.1 8.7 88 348-452 26-116 (239)
90 cd06422 NTP_transferase_like_1 22.1 3.8E+02 0.0083 26.2 7.9 76 350-428 33-109 (221)
91 cd03174 DRE_TIM_metallolyase D 22.0 5.4E+02 0.012 25.9 9.2 88 339-433 69-176 (265)
No 1
>PF01697 Glyco_transf_92: Glycosyltransferase family 92; InterPro: IPR008166 This entry represents a region approximately 300 residues long that is of unknown function. The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues.
Probab=99.94 E-value=9.1e-27 Score=237.55 Aligned_cols=203 Identities=35% Similarity=0.642 Sum_probs=151.2
Q ss_pred ceEEEEEEeecchHH--HHHHHHHHHHhcCccEEEEEEcCCCccHHHHHHHHhcCCccEEEeeCC---------------
Q 043544 334 KFELCVCTMLWNQAS--LIREWIMYHAWLGVERWFIYDNNSDDGIQKVIEELNLENYNVSRHNWP--------------- 396 (619)
Q Consensus 334 k~~L~VctIvkNEA~--~L~EWIeyH~alGVD~f~IYDNgStD~T~eIL~~y~~~G~~Vt~~~Wp--------------- 396 (619)
++.+|+.++.+||++ .|.|||+||+++|+++|+||++++++++.++|+.|.+.|. |++++||
T Consensus 2 ~~~vCv~pl~~~~~~~~~l~e~ie~~~~~G~~~~~~Y~~~~~~~~~~vL~~Y~~~g~-v~~~~w~~~~~~~~~~~~~~~~ 80 (285)
T PF01697_consen 2 DFVVCVSPLFGNEDDWLQLIEWIEYHRLLGVDHFYFYDNSSSPSVRKVLKEYERSGY-VEVIPWPLRPKFPDFPSPFPDP 80 (285)
T ss_pred cEEEEccchhcccccHHHHHHHHHHHHHhCCCEEEEEEccCCHHHHHhHHHHhhcCe-EEEEEcccccccCCcccchhhh
Confidence 467888889999954 9999999999999999999999999999999999999998 9999997
Q ss_pred ----CcchHHHHHHHHHHHccCCCcEEEEeeCCceeecCCCcccCCcccchHHHHHHhcCCCCceeEEEE--EE---EEe
Q 043544 397 ----WIKTQEAGFSHCALTARNECKWVGFFDVDEFFYFPRDHRLGLLGENSLRSLVANFSSSKTVAEIRT--SC---HSF 467 (619)
Q Consensus 397 ----~~~~Q~~A~n~Cl~r~~~~adWVlFlDaDEFL~~P~~~g~~~p~~~sL~dlL~~~~~~p~vgaI~v--~w---~~F 467 (619)
+...|..+++||++|++..++||+|+|+||||+ |... .....++.++++.... ..++++.+ .| ..+
T Consensus 81 ~~~~~~~~q~~a~~DCl~r~~~~~~~v~f~DiDE~lv-P~~~---~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~ 155 (285)
T PF01697_consen 81 NSSVERRGQIAAYNDCLLRYRYRAKWVAFIDIDEFLV-PTNA---PTYPEEFEDLLREFPN-ISAGAYSFRNSWFYKYEF 155 (285)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhceEEEEeccccEEE-eccc---cchhhHHHHHHhhccc-cceEEEEEeEEEEEeccc
Confidence 124689999999999999999999999999995 6652 0111478888888764 23454443 22 235
Q ss_pred CCCCCccCCCCCeEEeeEeecCCC--------CCceEEEeCCccccccccceeeEEecCCeeEeeeCCceeEEEeeccCC
Q 043544 468 GPSGLSSHPAQGVTVGYTCRLQSP--------ERHKSIVRPDLLNSSLLNVVHHFRLKAGYRYLNMPENIAVINHYKYQV 539 (619)
Q Consensus 468 G~sG~~~~P~~gV~~~yt~Rl~~~--------~r~KsIVRp~~V~~slin~VHh~~l~~G~~~~~l~~~~a~InHY~yrS 539 (619)
++++....|.+++...+.++.... .+.|+||||+.+..+++|.+.++....|.....++...+.|+||+..+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~IvrP~~v~~~~~H~~~~~~~~~~~~~~~v~~~~~~i~HYr~~~ 235 (285)
T PF01697_consen 156 GPSFYESSPSQLVSSLYFKRFRKTGVKKTRPGHRSKSIVRPEKVNSMGIHHPWKFYNSSGYKILHVPPEIALINHYRDKS 235 (285)
T ss_pred CccccccchHHhhhcceeeeecccccccccccccceeecChhHeEEEecccceeecCCCCceEEEeCcceEEEeccccCc
Confidence 555544444444443333333211 136999999999998644333322223666778899999999999988
Q ss_pred hHH
Q 043544 540 WET 542 (619)
Q Consensus 540 ~ee 542 (619)
+.+
T Consensus 236 ~~~ 238 (285)
T PF01697_consen 236 WPE 238 (285)
T ss_pred ccc
Confidence 443
No 2
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=99.76 E-value=2.6e-18 Score=149.48 Aligned_cols=95 Identities=32% Similarity=0.532 Sum_probs=74.2
Q ss_pred cchHHHHHHHHHHHHhcCccEEEEEEcCCCccHHHHHHHHhcCCccEEEeeCCCc--chHHHHHHHHHHHccCCCcEEEE
Q 043544 344 WNQASLIREWIMYHAWLGVERWFIYDNNSDDGIQKVIEELNLENYNVSRHNWPWI--KTQEAGFSHCALTARNECKWVGF 421 (619)
Q Consensus 344 kNEA~~L~EWIeyH~alGVD~f~IYDNgStD~T~eIL~~y~~~G~~Vt~~~Wp~~--~~Q~~A~n~Cl~r~~~~adWVlF 421 (619)
|||+.+|++||+||+.+|+++|+||||+|+|+|.++|+.+.+.+ |.....|.. ..|....+.|+.+ ....+|+++
T Consensus 1 rne~~~L~~wl~~~~~lG~d~i~i~d~~s~D~t~~~l~~~~~v~--i~~~~~~~~~~~~~~~~~~~~~~~-~~~~dWvl~ 77 (97)
T PF13704_consen 1 RNEADYLPEWLAHHLALGVDHIYIYDDGSTDGTREILRALPGVG--IIRWVDPYRDERRQRAWRNALIER-AFDADWVLF 77 (97)
T ss_pred CChHHHHHHHHHHHHHcCCCEEEEEECCCCccHHHHHHhCCCcE--EEEeCCCccchHHHHHHHHHHHHh-CCCCCEEEE
Confidence 79999999999999999999999999999999999999995433 333333432 3555555555554 457899999
Q ss_pred eeCCceeecCCCcccCCcccchHHHHH
Q 043544 422 FDVDEFFYFPRDHRLGLLGENSLRSLV 448 (619)
Q Consensus 422 lDaDEFL~~P~~~g~~~p~~~sL~dlL 448 (619)
+|+|||++.|... .+|+++|
T Consensus 78 ~D~DEfl~~~~~~-------~~l~~~L 97 (97)
T PF13704_consen 78 LDADEFLVPPPGR-------RSLRDFL 97 (97)
T ss_pred EeeeEEEecCCCC-------CCHHHhC
Confidence 9999999866643 3788875
No 3
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=99.55 E-value=1.3e-13 Score=137.41 Aligned_cols=189 Identities=22% Similarity=0.223 Sum_probs=117.8
Q ss_pred EEEEEeecchHHHHHHHHHHHHhcCccEEEEEEcCCCccHHHHHHHHhcCCccEEEeeCCCcchHHHHHHHHHHHccCCC
Q 043544 337 LCVCTMLWNQASLIREWIMYHAWLGVERWFIYDNNSDDGIQKVIEELNLENYNVSRHNWPWIKTQEAGFSHCALTARNEC 416 (619)
Q Consensus 337 L~VctIvkNEA~~L~EWIeyH~alGVD~f~IYDNgStD~T~eIL~~y~~~G~~Vt~~~Wp~~~~Q~~A~n~Cl~r~~~~a 416 (619)
|+++++++||+..|.++|++-..+ .++|+|+||+|+|+|.+|++.+ |..+....|.+...|. |.++.. ..+
T Consensus 2 isvii~~~Ne~~~l~~~l~sl~~~-~~eiivvD~gStD~t~~i~~~~---~~~v~~~~~~g~~~~~---n~~~~~--a~~ 72 (229)
T cd02511 2 LSVVIITKNEERNIERCLESVKWA-VDEIIVVDSGSTDRTVEIAKEY---GAKVYQRWWDGFGAQR---NFALEL--ATN 72 (229)
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcc-cCEEEEEeCCCCccHHHHHHHc---CCEEEECCCCChHHHH---HHHHHh--CCC
Confidence 788999999999999999985432 3899999999999999999976 5545444444554443 445543 457
Q ss_pred cEEEEeeCCceeecCCCcccCCcccchHHHHHHhcCCCCceeEEEEEEEE--eCCCCCccCCCCCeEEeeEeecCCCCCc
Q 043544 417 KWVGFFDVDEFFYFPRDHRLGLLGENSLRSLVANFSSSKTVAEIRTSCHS--FGPSGLSSHPAQGVTVGYTCRLQSPERH 494 (619)
Q Consensus 417 dWVlFlDaDEFL~~P~~~g~~~p~~~sL~dlL~~~~~~p~vgaI~v~w~~--FG~sG~~~~P~~gV~~~yt~Rl~~~~r~ 494 (619)
+||+++|+||++ .|... ..+.+.+++.+ . ..+.+.... .|. .... .++...+..|+.. +.
T Consensus 73 d~vl~lDaD~~~-~~~~~-------~~l~~~~~~~~---~-~~~~~~~~~~~~~~--~~~~--~~~~~~~~~rl~~--~~ 134 (229)
T cd02511 73 DWVLSLDADERL-TPELA-------DEILALLATDD---Y-DGYYVPRRNFFLGR--WIRH--GGWYPDRQLRLFR--RG 134 (229)
T ss_pred CEEEEEeCCcCc-CHHHH-------HHHHHHHhCCC---C-cEEEEEEEEEEcCe--eeec--CCCCCCceEEEEE--CC
Confidence 899999999999 46543 34555555432 1 223332222 232 1111 2222333333321 11
Q ss_pred eEEEeCCccccccccceeeEEecCCeeEeeeCCceeEEEeeccCChHHHHHHHhchhhhhhHhhHHHHhcCCC
Q 043544 495 KSIVRPDLLNSSLLNVVHHFRLKAGYRYLNMPENIAVINHYKYQVWETFRAKFFRRVATYVVDWQENQNTGSK 567 (619)
Q Consensus 495 KsIVRp~~V~~slin~VHh~~l~~G~~~~~l~~~~a~InHY~yrS~eeFl~K~~Rg~atYv~dW~~~~n~~gk 567 (619)
+..+... .+|+.....+.. ... ..+.+.||.+++++++..|..| |...++++....+|
T Consensus 135 ~~~~~~~--------~vhe~~~~~~~~-~~~--~~~~~~H~~~~~~~~~~~K~~r----y~~~~a~~~~~~~~ 192 (229)
T cd02511 135 KARFEDG--------RVHEQVVVDGGV-GIV--LKGDILHYGYKSLEEFLEKHNR----YSSLEAKDLAAKGK 192 (229)
T ss_pred CeEECCC--------cccceEEeCCCe-eec--CCCceeCCCCCCHHHHHHHHHH----HHHHHHHHHHHcCC
Confidence 2122211 245543323211 110 3467999999999999999999 99999887777766
No 4
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=98.67 E-value=4.3e-07 Score=82.33 Aligned_cols=103 Identities=17% Similarity=0.127 Sum_probs=77.0
Q ss_pred EEEEeecchHHHHHHHHHHHHhc--CccEEEEEEcCCCccHHHHHHHHhcCCccEEEeeCCCcchHHHHHHHHHHHccCC
Q 043544 338 CVCTMLWNQASLIREWIMYHAWL--GVERWFIYDNNSDDGIQKVIEELNLENYNVSRHNWPWIKTQEAGFSHCALTARNE 415 (619)
Q Consensus 338 ~VctIvkNEA~~L~EWIeyH~al--GVD~f~IYDNgStD~T~eIL~~y~~~G~~Vt~~~Wp~~~~Q~~A~n~Cl~r~~~~ 415 (619)
+|++.++|++++|.++|+..+.+ ...+++|+||+|+|++.++++++.+.+..++++..+.......+++.++..+ .
T Consensus 1 Svvip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~~~~~i~~i~~~~n~g~~~~~n~~~~~a--~ 78 (169)
T PF00535_consen 1 SVVIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAESDPNIRYIRNPENLGFSAARNRGIKHA--K 78 (169)
T ss_dssp EEEEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHCCSTTEEEEEHCCCSHHHHHHHHHHHH----
T ss_pred CEEEEeeCCHHHHHHHHHHHhhccCCCEEEEEecccccccccccccccccccccccccccccccccccccccccccc--c
Confidence 57788899999999999987765 5678999999999999999999976455577777665556667788888764 4
Q ss_pred CcEEEEeeCCceeecCCCcccCCcccchHHHHHHh
Q 043544 416 CKWVGFFDVDEFFYFPRDHRLGLLGENSLRSLVAN 450 (619)
Q Consensus 416 adWVlFlDaDEFL~~P~~~g~~~p~~~sL~dlL~~ 450 (619)
.+|++++|.|.++ .|..- ..+.+.+++
T Consensus 79 ~~~i~~ld~D~~~-~~~~l-------~~l~~~~~~ 105 (169)
T PF00535_consen 79 GEYILFLDDDDII-SPDWL-------EELVEALEK 105 (169)
T ss_dssp SSEEEEEETTEEE--TTHH-------HHHHHHHHH
T ss_pred eeEEEEeCCCceE-cHHHH-------HHHHHHHHh
Confidence 5699999999999 35432 355555555
No 5
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.42 E-value=4.1e-06 Score=80.38 Aligned_cols=92 Identities=18% Similarity=0.203 Sum_probs=66.7
Q ss_pred EEEEeecchHHHHHHHHHHHHhcC--ccEEEEEEcCCCccHHHHHHHHhcCC-ccEEEeeCCCcchHHHHHHHHHHHccC
Q 043544 338 CVCTMLWNQASLIREWIMYHAWLG--VERWFIYDNNSDDGIQKVIEELNLEN-YNVSRHNWPWIKTQEAGFSHCALTARN 414 (619)
Q Consensus 338 ~VctIvkNEA~~L~EWIeyH~alG--VD~f~IYDNgStD~T~eIL~~y~~~G-~~Vt~~~Wp~~~~Q~~A~n~Cl~r~~~ 414 (619)
+|++.++|++++|.++|+.-..+- --+++|.|++|+|+|.++++.+.+.. ..+..+.-+.......+++.++.. .
T Consensus 1 sIvIp~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~~--~ 78 (214)
T cd04196 1 AVLMATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQA--A 78 (214)
T ss_pred CEEEEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHHHHh--C
Confidence 356778999999999999876542 24899999999999999999997543 123433333333444555566554 5
Q ss_pred CCcEEEEeeCCceeecCC
Q 043544 415 ECKWVGFFDVDEFFYFPR 432 (619)
Q Consensus 415 ~adWVlFlDaDEFL~~P~ 432 (619)
+++||+|+|.|..+ .|.
T Consensus 79 ~g~~v~~ld~Dd~~-~~~ 95 (214)
T cd04196 79 DGDYVFFCDQDDIW-LPD 95 (214)
T ss_pred CCCEEEEECCCccc-Chh
Confidence 68999999999998 353
No 6
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=98.39 E-value=1.1e-05 Score=80.17 Aligned_cols=117 Identities=18% Similarity=0.211 Sum_probs=80.7
Q ss_pred CCceEEEEEEeecchHHHHHHHHHHHHhc-Cc---cEEEEEEcCCCccHHHHHHHHhcCCccEEEeeCCCcchHHHHHHH
Q 043544 332 GGKFELCVCTMLWNQASLIREWIMYHAWL-GV---ERWFIYDNNSDDGIQKVIEELNLENYNVSRHNWPWIKTQEAGFSH 407 (619)
Q Consensus 332 ~kk~~L~VctIvkNEA~~L~EWIeyH~al-GV---D~f~IYDNgStD~T~eIL~~y~~~G~~Vt~~~Wp~~~~Q~~A~n~ 407 (619)
.....++++..++||+..|.++|+.-..+ .. -+++|.|++|+|++.++++.+.+. .+..+.-+.......+.+.
T Consensus 26 ~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~--~v~~i~~~~~~g~~~a~n~ 103 (251)
T cd06439 26 AYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADK--GVKLLRFPERRGKAAALNR 103 (251)
T ss_pred CCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhC--cEEEEEcCCCCChHHHHHH
Confidence 34456889989999999999999875543 22 279999999999999999999654 2444433322233455666
Q ss_pred HHHHccCCCcEEEEeeCCceeecCCCcccCCcccchHHHHHHhcCCCCceeEEEEEE
Q 043544 408 CALTARNECKWVGFFDVDEFFYFPRDHRLGLLGENSLRSLVANFSSSKTVAEIRTSC 464 (619)
Q Consensus 408 Cl~r~~~~adWVlFlDaDEFL~~P~~~g~~~p~~~sL~dlL~~~~~~p~vgaI~v~w 464 (619)
++... ..|||+|+|+|.++. |. .|..+++.+.+ +.++.+.-..
T Consensus 104 gi~~a--~~d~i~~lD~D~~~~-~~----------~l~~l~~~~~~-~~~~~v~~~~ 146 (251)
T cd06439 104 ALALA--TGEIVVFTDANALLD-PD----------ALRLLVRHFAD-PSVGAVSGEL 146 (251)
T ss_pred HHHHc--CCCEEEEEccccCcC-HH----------HHHHHHHHhcC-CCccEEEeEE
Confidence 66654 459999999999993 43 46666666543 3455444333
No 7
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.37 E-value=3.1e-06 Score=75.50 Aligned_cols=94 Identities=18% Similarity=0.127 Sum_probs=70.8
Q ss_pred eEEEEEEeecchHHHHHHHHHHHHhcCc--cEEEEEEcCCCccHHHHHHHHhcCCccEEEeeCCCcchHHHHHHHHHHHc
Q 043544 335 FELCVCTMLWNQASLIREWIMYHAWLGV--ERWFIYDNNSDDGIQKVIEELNLENYNVSRHNWPWIKTQEAGFSHCALTA 412 (619)
Q Consensus 335 ~~L~VctIvkNEA~~L~EWIeyH~alGV--D~f~IYDNgStD~T~eIL~~y~~~G~~Vt~~~Wp~~~~Q~~A~n~Cl~r~ 412 (619)
..++|++.++|++++|.+.|++-..+.. .+++|.|++|+|+|.++++.+......+.....+....+..+++.++...
T Consensus 3 ~~~siiip~~n~~~~l~~~l~s~~~q~~~~~eiivvddgs~d~t~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 82 (291)
T COG0463 3 PKVSVVIPTYNEEEYLPEALESLLNQTYKDFEIIVVDDGSTDGTTEIAIEYGAKDVRVIRLINERNGGLGAARNAGLEYA 82 (291)
T ss_pred ccEEEEEeccchhhhHHHHHHHHHhhhhcceEEEEEeCCCCCChHHHHHHHhhhcceEEEeecccCCChHHHHHhhHHhc
Confidence 5678888899999999999998765532 25999999999999999999975421133333344455566777777654
Q ss_pred cCCCcEEEEeeCCceeecC
Q 043544 413 RNECKWVGFFDVDEFFYFP 431 (619)
Q Consensus 413 ~~~adWVlFlDaDEFL~~P 431 (619)
.. +|++++|+|+. ..+
T Consensus 83 ~~--~~~~~~d~d~~-~~~ 98 (291)
T COG0463 83 RG--DYIVFLDADDQ-HPP 98 (291)
T ss_pred cC--CEEEEEccCCC-CCH
Confidence 43 99999999999 733
No 8
>PRK10063 putative glycosyl transferase; Provisional
Probab=98.31 E-value=1.2e-05 Score=82.05 Aligned_cols=92 Identities=20% Similarity=0.245 Sum_probs=68.5
Q ss_pred EEEEEEeecchHHHHHHHHHHHHhc----Cc-cEEEEEEcCCCccHHHHHHHHhcCCccEEEeeCCCcchHHHHHHHHHH
Q 043544 336 ELCVCTMLWNQASLIREWIMYHAWL----GV-ERWFIYDNNSDDGIQKVIEELNLENYNVSRHNWPWIKTQEAGFSHCAL 410 (619)
Q Consensus 336 ~L~VctIvkNEA~~L~EWIeyH~al----GV-D~f~IYDNgStD~T~eIL~~y~~~G~~Vt~~~Wp~~~~Q~~A~n~Cl~ 410 (619)
.++|++.++|++++|.++|+.-..+ +. -+++|.|++|+|+|.++++.+.+.. .+..+.-+ ....-.|.|..+.
T Consensus 2 ~vSVIi~~yN~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~~~~~-~i~~i~~~-~~G~~~A~N~Gi~ 79 (248)
T PRK10063 2 LLSVITVAFRNLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENLNGIF-NLRFVSEP-DNGIYDAMNKGIA 79 (248)
T ss_pred eEEEEEEeCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHhcccC-CEEEEECC-CCCHHHHHHHHHH
Confidence 5789999999999999999986432 22 3799999999999999999985321 24444323 2244466777776
Q ss_pred HccCCCcEEEEeeCCceeecCC
Q 043544 411 TARNECKWVGFFDVDEFFYFPR 432 (619)
Q Consensus 411 r~~~~adWVlFlDaDEFL~~P~ 432 (619)
. ...+||+|+|+|+++. |.
T Consensus 80 ~--a~g~~v~~ld~DD~~~-~~ 98 (248)
T PRK10063 80 M--AQGRFALFLNSGDIFH-QD 98 (248)
T ss_pred H--cCCCEEEEEeCCcccC-cC
Confidence 5 3579999999999994 53
No 9
>PRK10073 putative glycosyl transferase; Provisional
Probab=98.29 E-value=7.2e-06 Score=87.24 Aligned_cols=94 Identities=15% Similarity=0.139 Sum_probs=73.4
Q ss_pred eEEEEEEeecchHHHHHHHHHHHHhcC--ccEEEEEEcCCCccHHHHHHHHhcCCccEEEeeCCCcchHHHHHHHHHHHc
Q 043544 335 FELCVCTMLWNQASLIREWIMYHAWLG--VERWFIYDNNSDDGIQKVIEELNLENYNVSRHNWPWIKTQEAGFSHCALTA 412 (619)
Q Consensus 335 ~~L~VctIvkNEA~~L~EWIeyH~alG--VD~f~IYDNgStD~T~eIL~~y~~~G~~Vt~~~Wp~~~~Q~~A~n~Cl~r~ 412 (619)
..++|++-++|++++|.++|+.-..+- --+++|.|+||+|++.++++.+.+....|.++.-+ ...+..+.|.++..
T Consensus 6 p~vSVIIP~yN~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~~~~~~~i~vi~~~-n~G~~~arN~gl~~- 83 (328)
T PRK10073 6 PKLSIIIPLYNAGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYAENYPHVRLLHQA-NAGVSVARNTGLAV- 83 (328)
T ss_pred CeEEEEEeccCCHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHHHhhCCCEEEEECC-CCChHHHHHHHHHh-
Confidence 358888889999999999999876553 23799999999999999999997644346555433 44566777788776
Q ss_pred cCCCcEEEEeeCCceeecCC
Q 043544 413 RNECKWVGFFDVDEFFYFPR 432 (619)
Q Consensus 413 ~~~adWVlFlDaDEFL~~P~ 432 (619)
...+||+|+|.|.++ .|.
T Consensus 84 -a~g~yi~flD~DD~~-~p~ 101 (328)
T PRK10073 84 -ATGKYVAFPDADDVV-YPT 101 (328)
T ss_pred -CCCCEEEEECCCCcc-Chh
Confidence 467999999999998 354
No 10
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.27 E-value=1.7e-05 Score=74.64 Aligned_cols=88 Identities=18% Similarity=0.175 Sum_probs=64.1
Q ss_pred EEEeecchHHHHHHHHHHHHhcCcc--EEEEEEcCCCccHHHHHHHHhcCCccEEEeeCCCcchHHHHHHHHHHHccCCC
Q 043544 339 VCTMLWNQASLIREWIMYHAWLGVE--RWFIYDNNSDDGIQKVIEELNLENYNVSRHNWPWIKTQEAGFSHCALTARNEC 416 (619)
Q Consensus 339 VctIvkNEA~~L~EWIeyH~alGVD--~f~IYDNgStD~T~eIL~~y~~~G~~Vt~~~Wp~~~~Q~~A~n~Cl~r~~~~a 416 (619)
+++.++|++++|.++|+.-..+... +++|.||+|+|++.++++.+.... +.... .....-..+.+.++.. ..+
T Consensus 2 ivi~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~~~~--~~~~~-~~~~g~~~a~n~~~~~--a~~ 76 (202)
T cd06433 2 IITPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYEDKI--TYWIS-EPDKGIYDAMNKGIAL--ATG 76 (202)
T ss_pred EEEeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhHhhc--EEEEe-cCCcCHHHHHHHHHHH--cCC
Confidence 5677899999999999987665444 799999999999999999986542 22221 1122223556666665 357
Q ss_pred cEEEEeeCCceeecCC
Q 043544 417 KWVGFFDVDEFFYFPR 432 (619)
Q Consensus 417 dWVlFlDaDEFL~~P~ 432 (619)
+||+++|.|.++. |.
T Consensus 77 ~~v~~ld~D~~~~-~~ 91 (202)
T cd06433 77 DIIGFLNSDDTLL-PG 91 (202)
T ss_pred CEEEEeCCCcccC-ch
Confidence 9999999999994 53
No 11
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=98.23 E-value=1.7e-05 Score=79.28 Aligned_cols=91 Identities=12% Similarity=0.105 Sum_probs=67.1
Q ss_pred EEEEEEeecchHHHHHHHHHHHHhcCcc----EEEEEEcCCCccHHHHHHHHhcCC-ccEEEeeCCCcchHHHHHHHHHH
Q 043544 336 ELCVCTMLWNQASLIREWIMYHAWLGVE----RWFIYDNNSDDGIQKVIEELNLEN-YNVSRHNWPWIKTQEAGFSHCAL 410 (619)
Q Consensus 336 ~L~VctIvkNEA~~L~EWIeyH~alGVD----~f~IYDNgStD~T~eIL~~y~~~G-~~Vt~~~Wp~~~~Q~~A~n~Cl~ 410 (619)
.++|++-++||++.|.+.|+.-..+-.. +|+|+|++|+|+|.++++.+.... ..+....-.....+..+.|.++.
T Consensus 2 ~vsIiIp~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~~~~~~i~~~~~~~~~G~~~a~n~g~~ 81 (241)
T cd06427 2 VYTILVPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRLPSIFRVVVVPPSQPRTKPKACNYALA 81 (241)
T ss_pred eEEEEEecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhccCCCeeEEEecCCCCCchHHHHHHHHH
Confidence 4788888899999999999986654322 588899999999999999985321 22322222223455677877777
Q ss_pred HccCCCcEEEEeeCCcee
Q 043544 411 TARNECKWVGFFDVDEFF 428 (619)
Q Consensus 411 r~~~~adWVlFlDaDEFL 428 (619)
. ...|||+|+|+|-.+
T Consensus 82 ~--a~gd~i~~~DaD~~~ 97 (241)
T cd06427 82 F--ARGEYVVIYDAEDAP 97 (241)
T ss_pred h--cCCCEEEEEcCCCCC
Confidence 5 457999999999998
No 12
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=98.21 E-value=2.4e-05 Score=74.97 Aligned_cols=87 Identities=11% Similarity=0.139 Sum_probs=64.1
Q ss_pred EEEeecchH--HHHHHHHHHHHhc--CccEEEEEEcCC-CccHHHHHHHHhcCCccEEEeeCCCcchHHHHHHHHHHHcc
Q 043544 339 VCTMLWNQA--SLIREWIMYHAWL--GVERWFIYDNNS-DDGIQKVIEELNLENYNVSRHNWPWIKTQEAGFSHCALTAR 413 (619)
Q Consensus 339 VctIvkNEA--~~L~EWIeyH~al--GVD~f~IYDNgS-tD~T~eIL~~y~~~G~~Vt~~~Wp~~~~Q~~A~n~Cl~r~~ 413 (619)
|++.++|++ .+|.++|++-..+ .-.+++|+|++| +|+|.++++.+.+.. ++..+.-+....--.+.|.++..
T Consensus 2 viip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~-~i~~i~~~~n~G~~~a~N~g~~~-- 78 (201)
T cd04195 2 VLMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKL-PLKVVPLEKNRGLGKALNEGLKH-- 78 (201)
T ss_pred EEEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcC-CeEEEEcCccccHHHHHHHHHHh--
Confidence 556668875 5999999987665 346788888888 788999999986533 25544434333445667888775
Q ss_pred CCCcEEEEeeCCcee
Q 043544 414 NECKWVGFFDVDEFF 428 (619)
Q Consensus 414 ~~adWVlFlDaDEFL 428 (619)
...+|++|+|.|..+
T Consensus 79 a~gd~i~~lD~Dd~~ 93 (201)
T cd04195 79 CTYDWVARMDTDDIS 93 (201)
T ss_pred cCCCEEEEeCCcccc
Confidence 468999999999987
No 13
>PRK11204 N-glycosyltransferase; Provisional
Probab=98.19 E-value=1.9e-05 Score=85.76 Aligned_cols=114 Identities=12% Similarity=0.130 Sum_probs=81.4
Q ss_pred eEEEEEEeecchHHHHHHHHHHHHhcC--ccEEEEEEcCCCccHHHHHHHHhcCCccEEEeeCCCcchHHHHHHHHHHHc
Q 043544 335 FELCVCTMLWNQASLIREWIMYHAWLG--VERWFIYDNNSDDGIQKVIEELNLENYNVSRHNWPWIKTQEAGFSHCALTA 412 (619)
Q Consensus 335 ~~L~VctIvkNEA~~L~EWIeyH~alG--VD~f~IYDNgStD~T~eIL~~y~~~G~~Vt~~~Wp~~~~Q~~A~n~Cl~r~ 412 (619)
..++|+.-++||++.|.++|+.-..+. -.+++|.|++|+|+|.++++++.+...+++.+..+....-..+.|.++..
T Consensus 54 p~vsViIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~~v~~i~~~~n~Gka~aln~g~~~- 132 (420)
T PRK11204 54 PGVSILVPCYNEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQIPRLRVIHLAENQGKANALNTGAAA- 132 (420)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhCCcEEEEEcCCCCCHHHHHHHHHHH-
Confidence 357888888999999999999855543 23899999999999999999987554346555533333444667777765
Q ss_pred cCCCcEEEEeeCCceeecCCCcccCCcccchHHHHHHhcCCCCceeEEE
Q 043544 413 RNECKWVGFFDVDEFFYFPRDHRLGLLGENSLRSLVANFSSSKTVAEIR 461 (619)
Q Consensus 413 ~~~adWVlFlDaDEFL~~P~~~g~~~p~~~sL~dlL~~~~~~p~vgaI~ 461 (619)
.+.||++++|+|..+ .|+ .|..+++.+...+.++.+.
T Consensus 133 -a~~d~i~~lDaD~~~-~~d----------~L~~l~~~~~~~~~v~~v~ 169 (420)
T PRK11204 133 -ARSEYLVCIDGDALL-DPD----------AAAYMVEHFLHNPRVGAVT 169 (420)
T ss_pred -cCCCEEEEECCCCCC-Chh----------HHHHHHHHHHhCCCeEEEE
Confidence 468999999999977 342 4566666553335566654
No 14
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=98.15 E-value=4.4e-05 Score=68.86 Aligned_cols=87 Identities=17% Similarity=0.088 Sum_probs=61.7
Q ss_pred EEeecchHHHHHHHHHHHHhcC--ccEEEEEEcCCCccHHHHHHHHhcCC-ccEEEeeCCCcchHHHHHHHHHHHccCCC
Q 043544 340 CTMLWNQASLIREWIMYHAWLG--VERWFIYDNNSDDGIQKVIEELNLEN-YNVSRHNWPWIKTQEAGFSHCALTARNEC 416 (619)
Q Consensus 340 ctIvkNEA~~L~EWIeyH~alG--VD~f~IYDNgStD~T~eIL~~y~~~G-~~Vt~~~Wp~~~~Q~~A~n~Cl~r~~~~a 416 (619)
++.++|+++.|.++|+....+. -.+++|.|++|+|++.++++.+...+ ..+..+..+.......+.+..+... ..
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~--~~ 79 (180)
T cd06423 2 IVPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHA--KG 79 (180)
T ss_pred eecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhc--CC
Confidence 4557999999999999877654 56899999999999999999986543 1133222222222224444554442 78
Q ss_pred cEEEEeeCCcee
Q 043544 417 KWVGFFDVDEFF 428 (619)
Q Consensus 417 dWVlFlDaDEFL 428 (619)
+|++|+|.|..+
T Consensus 80 ~~i~~~D~D~~~ 91 (180)
T cd06423 80 DIVVVLDADTIL 91 (180)
T ss_pred CEEEEECCCCCc
Confidence 999999999988
No 15
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=98.14 E-value=2.4e-05 Score=86.37 Aligned_cols=112 Identities=13% Similarity=0.112 Sum_probs=78.4
Q ss_pred eEEEEEEeecchHHHHHHHHHHHHhcCc--c--EEEEEEcCCCccHHHHHHHHhcCCccEEEeeCCCcchHHHHHHHHHH
Q 043544 335 FELCVCTMLWNQASLIREWIMYHAWLGV--E--RWFIYDNNSDDGIQKVIEELNLENYNVSRHNWPWIKTQEAGFSHCAL 410 (619)
Q Consensus 335 ~~L~VctIvkNEA~~L~EWIeyH~alGV--D--~f~IYDNgStD~T~eIL~~y~~~G~~Vt~~~Wp~~~~Q~~A~n~Cl~ 410 (619)
..++|+.-++||++.|.++|+.-..+-. + +++|.||+|+|+|.++++++.+....+..+.-+..+....|.|.++.
T Consensus 49 P~vsVIIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~~v~v~~~~~~~Gka~AlN~gl~ 128 (439)
T TIGR03111 49 PDITIIIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQNEFPGLSLRYMNSDQGKAKALNAAIY 128 (439)
T ss_pred CCEEEEEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHHhCCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4578888889999999999998655422 2 68999999999999999988654333433222223444567777776
Q ss_pred HccCCCcEEEEeeCCceeecCCCcccCCcccchHHHHHHhcCCCCceeE
Q 043544 411 TARNECKWVGFFDVDEFFYFPRDHRLGLLGENSLRSLVANFSSSKTVAE 459 (619)
Q Consensus 411 r~~~~adWVlFlDaDEFL~~P~~~g~~~p~~~sL~dlL~~~~~~p~vga 459 (619)
. ...+||+++|+|..+ .|+ .|..+++.+.+.+.++.
T Consensus 129 ~--s~g~~v~~~DaD~~~-~~d----------~L~~l~~~f~~~~~v~~ 164 (439)
T TIGR03111 129 N--SIGKYIIHIDSDGKL-HKD----------AIKNMVTRFENNPDIHA 164 (439)
T ss_pred H--ccCCEEEEECCCCCc-ChH----------HHHHHHHHHHhCCCeEE
Confidence 6 457999999999998 343 45666665543344544
No 16
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=98.14 E-value=1.4e-05 Score=77.63 Aligned_cols=87 Identities=21% Similarity=0.118 Sum_probs=66.6
Q ss_pred EEeecchHHHHHHHHHHHHhc---CccEEEEEEcCCCccHHHHHHHHhcCCccEEEeeCCCcchHHHHHHHHHHHccCCC
Q 043544 340 CTMLWNQASLIREWIMYHAWL---GVERWFIYDNNSDDGIQKVIEELNLENYNVSRHNWPWIKTQEAGFSHCALTARNEC 416 (619)
Q Consensus 340 ctIvkNEA~~L~EWIeyH~al---GVD~f~IYDNgStD~T~eIL~~y~~~G~~Vt~~~Wp~~~~Q~~A~n~Cl~r~~~~a 416 (619)
++.++||++.|..+|+.-..+ ...+++|+||+|+|++.++++.+.+....+..+..........+.+.++..+. .
T Consensus 2 iIp~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~~~~~i~~~~~~~n~G~~~a~n~g~~~a~--g 79 (224)
T cd06442 2 IIPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAKEYPRVRLIVRPGKRGLGSAYIEGFKAAR--G 79 (224)
T ss_pred eEeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHHhCCceEEEecCCCCChHHHHHHHHHHcC--C
Confidence 456799999999999875443 34689999999999999999998755433555555555555567778877644 5
Q ss_pred cEEEEeeCCcee
Q 043544 417 KWVGFFDVDEFF 428 (619)
Q Consensus 417 dWVlFlDaDEFL 428 (619)
+||+|+|.|..+
T Consensus 80 d~i~~lD~D~~~ 91 (224)
T cd06442 80 DVIVVMDADLSH 91 (224)
T ss_pred CEEEEEECCCCC
Confidence 999999999887
No 17
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=98.12 E-value=2.6e-05 Score=78.30 Aligned_cols=94 Identities=17% Similarity=0.142 Sum_probs=66.9
Q ss_pred CceEEEEEEeecchHHHHHHHHHHHHh-c---CccEEEEEEcCCCccHHHHHHHHhcC-C-ccEEEeeCCCcchHHHHHH
Q 043544 333 GKFELCVCTMLWNQASLIREWIMYHAW-L---GVERWFIYDNNSDDGIQKVIEELNLE-N-YNVSRHNWPWIKTQEAGFS 406 (619)
Q Consensus 333 kk~~L~VctIvkNEA~~L~EWIeyH~a-l---GVD~f~IYDNgStD~T~eIL~~y~~~-G-~~Vt~~~Wp~~~~Q~~A~n 406 (619)
....++|++-++||+..|.+.++.-.. + .--+|+|.|++|+|+|.++++++.+. + ..+..+..+.....-.+++
T Consensus 7 ~~~~vsVvIp~yne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a~n 86 (243)
T PLN02726 7 GAMKYSIIVPTYNERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTAYI 86 (243)
T ss_pred CCceEEEEEccCCchhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHH
Confidence 345688888899999999887764322 1 12389999999999999999998543 1 1244444343333345677
Q ss_pred HHHHHccCCCcEEEEeeCCcee
Q 043544 407 HCALTARNECKWVGFFDVDEFF 428 (619)
Q Consensus 407 ~Cl~r~~~~adWVlFlDaDEFL 428 (619)
.++.. ...+|++|+|+|-.+
T Consensus 87 ~g~~~--a~g~~i~~lD~D~~~ 106 (243)
T PLN02726 87 HGLKH--ASGDFVVIMDADLSH 106 (243)
T ss_pred HHHHH--cCCCEEEEEcCCCCC
Confidence 77765 458999999999886
No 18
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=98.10 E-value=1.5e-05 Score=75.03 Aligned_cols=87 Identities=18% Similarity=0.059 Sum_probs=66.4
Q ss_pred EEeecchHHHHHHHHHHHHhc----CccEEEEEEcCCCccHHHHHHHHhcCCccEEEeeCCCcchHHHHHHHHHHHccCC
Q 043544 340 CTMLWNQASLIREWIMYHAWL----GVERWFIYDNNSDDGIQKVIEELNLENYNVSRHNWPWIKTQEAGFSHCALTARNE 415 (619)
Q Consensus 340 ctIvkNEA~~L~EWIeyH~al----GVD~f~IYDNgStD~T~eIL~~y~~~G~~Vt~~~Wp~~~~Q~~A~n~Cl~r~~~~ 415 (619)
++.++|+++.|.++|++...+ ...+++|.||+|+|++.++++.+......+..+..+.......+++..+..+.
T Consensus 2 ii~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~~~~~~~~~~~~n~G~~~a~n~g~~~a~-- 79 (185)
T cd04179 2 VIPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAARVPRVRVIRLSRNFGKGAAVRAGFKAAR-- 79 (185)
T ss_pred eecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHhCCCeEEEEccCCCCccHHHHHHHHHhc--
Confidence 466799999999999987665 36899999999999999999998755433444444433334466777776644
Q ss_pred CcEEEEeeCCcee
Q 043544 416 CKWVGFFDVDEFF 428 (619)
Q Consensus 416 adWVlFlDaDEFL 428 (619)
.||++|+|.|..+
T Consensus 80 gd~i~~lD~D~~~ 92 (185)
T cd04179 80 GDIVVTMDADLQH 92 (185)
T ss_pred CCEEEEEeCCCCC
Confidence 5999999999987
No 19
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=98.09 E-value=6.9e-05 Score=73.20 Aligned_cols=112 Identities=16% Similarity=0.246 Sum_probs=75.4
Q ss_pred EEEEEEeecchH-HHHHHHHHHHHhcCc-c---EEEEEEcCCCccHHHHHHHHhcCCccEEEeeCCC-cchHHHHHHHHH
Q 043544 336 ELCVCTMLWNQA-SLIREWIMYHAWLGV-E---RWFIYDNNSDDGIQKVIEELNLENYNVSRHNWPW-IKTQEAGFSHCA 409 (619)
Q Consensus 336 ~L~VctIvkNEA-~~L~EWIeyH~alGV-D---~f~IYDNgStD~T~eIL~~y~~~G~~Vt~~~Wp~-~~~Q~~A~n~Cl 409 (619)
.+++++.++||. ..|+++|+.-..+-. + +++|.||+|+|++.++++.+...- .+..+.-+. .+....+++.++
T Consensus 2 ~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~n~~~ 80 (234)
T cd06421 2 TVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGVEY-GYRYLTRPDNRHAKAGNLNNAL 80 (234)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhccc-CceEEEeCCCCCCcHHHHHHHH
Confidence 367888889985 689999998766532 2 799999999999999999985321 222222221 123334567777
Q ss_pred HHccCCCcEEEEeeCCceeecCCCcccCCcccchHHHHHHhcCCCCceeEEE
Q 043544 410 LTARNECKWVGFFDVDEFFYFPRDHRLGLLGENSLRSLVANFSSSKTVAEIR 461 (619)
Q Consensus 410 ~r~~~~adWVlFlDaDEFL~~P~~~g~~~p~~~sL~dlL~~~~~~p~vgaI~ 461 (619)
.. ..++|++|+|.|.++ .|. .|..+++.+.+.+.++.+.
T Consensus 81 ~~--a~~d~i~~lD~D~~~-~~~----------~l~~l~~~~~~~~~~~~v~ 119 (234)
T cd06421 81 AH--TTGDFVAILDADHVP-TPD----------FLRRTLGYFLDDPKVALVQ 119 (234)
T ss_pred Hh--CCCCEEEEEccccCc-Ccc----------HHHHHHHHHhcCCCeEEEe
Confidence 65 368999999999998 353 4566666554324455443
No 20
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.09 E-value=2.2e-05 Score=75.54 Aligned_cols=88 Identities=19% Similarity=0.229 Sum_probs=63.9
Q ss_pred EEeecchHHHHHHHHHHHHhc--CccEEEEEEcCCCccHHHHHHHHhcCCccEEEeeCCCcchHHHHHHHHHHHc-cCCC
Q 043544 340 CTMLWNQASLIREWIMYHAWL--GVERWFIYDNNSDDGIQKVIEELNLENYNVSRHNWPWIKTQEAGFSHCALTA-RNEC 416 (619)
Q Consensus 340 ctIvkNEA~~L~EWIeyH~al--GVD~f~IYDNgStD~T~eIL~~y~~~G~~Vt~~~Wp~~~~Q~~A~n~Cl~r~-~~~a 416 (619)
++.++|+++.|.++|+.-..+ .-.+++|+||+|+|+|.++++.+...- +++.+..+.......+++.++... ...+
T Consensus 2 iI~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~~~~-~i~~~~~~~n~g~~~~~n~~~~~a~~~~~ 80 (202)
T cd04185 2 VVVTYNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLGDLD-NIVYLRLPENLGGAGGFYEGVRRAYELGY 80 (202)
T ss_pred EEEeeCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhcCCC-ceEEEECccccchhhHHHHHHHHHhccCC
Confidence 456799999999999987654 235899999999999999999986432 244444443333334455555433 3578
Q ss_pred cEEEEeeCCcee
Q 043544 417 KWVGFFDVDEFF 428 (619)
Q Consensus 417 dWVlFlDaDEFL 428 (619)
||++|+|.|..+
T Consensus 81 d~v~~ld~D~~~ 92 (202)
T cd04185 81 DWIWLMDDDAIP 92 (202)
T ss_pred CEEEEeCCCCCc
Confidence 999999999998
No 21
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=98.08 E-value=6.8e-05 Score=74.18 Aligned_cols=93 Identities=15% Similarity=0.150 Sum_probs=63.9
Q ss_pred EEEEEEeecchHHHHHHHHHHHHhcCc----cEEEEEEcCCCccHHHHHHHHhc----CCccEEEeeCCC-cchHHHHHH
Q 043544 336 ELCVCTMLWNQASLIREWIMYHAWLGV----ERWFIYDNNSDDGIQKVIEELNL----ENYNVSRHNWPW-IKTQEAGFS 406 (619)
Q Consensus 336 ~L~VctIvkNEA~~L~EWIeyH~alGV----D~f~IYDNgStD~T~eIL~~y~~----~G~~Vt~~~Wp~-~~~Q~~A~n 406 (619)
.++|++.++||+++|.++|+.-..+-. -+|+|.|| |+|+|.++++++.. .+.++..+.... .+....+.|
T Consensus 2 ~vSViIp~yNe~~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G~k~~a~n 80 (232)
T cd06437 2 MVTVQLPVFNEKYVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREIVEEYAAQGVNIKHVRRADRTGYKAGALA 80 (232)
T ss_pred ceEEEEecCCcHHHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHHHHHHhhcCCceEEEECCCCCCCchHHHH
Confidence 378888899999999999998655421 25778886 99999999887642 244454443221 222223455
Q ss_pred HHHHHccCCCcEEEEeeCCceeecCC
Q 043544 407 HCALTARNECKWVGFFDVDEFFYFPR 432 (619)
Q Consensus 407 ~Cl~r~~~~adWVlFlDaDEFL~~P~ 432 (619)
..+.. ...+||+|+|+|-.+ .|.
T Consensus 81 ~g~~~--a~~~~i~~~DaD~~~-~~~ 103 (232)
T cd06437 81 EGMKV--AKGEYVAIFDADFVP-PPD 103 (232)
T ss_pred HHHHh--CCCCEEEEEcCCCCC-ChH
Confidence 55554 368999999999998 343
No 22
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=98.08 E-value=5.4e-05 Score=74.33 Aligned_cols=110 Identities=11% Similarity=0.122 Sum_probs=78.4
Q ss_pred EEEEEeecchH-HHHHHHHHHHHhcCccEEEEEEcCCCccHHHHHHHHhcCCccEEEeeCCCcchHHHHHHHHHHHccCC
Q 043544 337 LCVCTMLWNQA-SLIREWIMYHAWLGVERWFIYDNNSDDGIQKVIEELNLENYNVSRHNWPWIKTQEAGFSHCALTARNE 415 (619)
Q Consensus 337 L~VctIvkNEA-~~L~EWIeyH~alGVD~f~IYDNgStD~T~eIL~~y~~~G~~Vt~~~Wp~~~~Q~~A~n~Cl~r~~~~ 415 (619)
++|++.++||+ +.|.++|+.-..+.-.+|+|.|++|+|++.+++........ +..+. ........+.+.++... .
T Consensus 2 isVvIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~~~~~~-~~v~~-~~~~g~~~a~n~g~~~a--~ 77 (235)
T cd06434 2 VTVIIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTVKYGG-IFVIT-VPHPGKRRALAEGIRHV--T 77 (235)
T ss_pred eEEEEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhhccCCc-EEEEe-cCCCChHHHHHHHHHHh--C
Confidence 67788889999 99999999877666679999999999999998855433221 33332 22233456677777653 6
Q ss_pred CcEEEEeeCCceeecCCCcccCCcccchHHHHHHhcCCCCceeEEEE
Q 043544 416 CKWVGFFDVDEFFYFPRDHRLGLLGENSLRSLVANFSSSKTVAEIRT 462 (619)
Q Consensus 416 adWVlFlDaDEFL~~P~~~g~~~p~~~sL~dlL~~~~~~p~vgaI~v 462 (619)
+|||+|+|+|..+. |. .|..+++.+. .+.++.+.-
T Consensus 78 ~d~v~~lD~D~~~~-~~----------~l~~l~~~~~-~~~v~~v~~ 112 (235)
T cd06434 78 TDIVVLLDSDTVWP-PN----------ALPEMLKPFE-DPKVGGVGT 112 (235)
T ss_pred CCEEEEECCCceeC-hh----------HHHHHHHhcc-CCCEeEEcC
Confidence 89999999999993 43 4677777665 355666543
No 23
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=98.08 E-value=3.1e-05 Score=83.90 Aligned_cols=108 Identities=18% Similarity=0.091 Sum_probs=74.2
Q ss_pred ceEEEEEEeecchHHHHHHHHHHHHhcC---ccEEEEEEcCCCccHHHHHHHHhcCCc---cEEEeeC---C-CcchHHH
Q 043544 334 KFELCVCTMLWNQASLIREWIMYHAWLG---VERWFIYDNNSDDGIQKVIEELNLENY---NVSRHNW---P-WIKTQEA 403 (619)
Q Consensus 334 k~~L~VctIvkNEA~~L~EWIeyH~alG---VD~f~IYDNgStD~T~eIL~~y~~~G~---~Vt~~~W---p-~~~~Q~~ 403 (619)
...++|++.++||++.|.++|+.-..+- .-+|+|+||+|+|+|.++++++.+... .++.+.- | +......
T Consensus 39 ~p~VSVIIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~ 118 (384)
T TIGR03469 39 WPAVVAVVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLW 118 (384)
T ss_pred CCCEEEEEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHH
Confidence 3458888889999999999999866552 248999999999999999999864211 2444331 1 2233344
Q ss_pred HHHHHHHHccC---CCcEEEEeeCCceeecCCCcccCCcccchHHHHHHhcC
Q 043544 404 GFSHCALTARN---ECKWVGFFDVDEFFYFPRDHRLGLLGENSLRSLVANFS 452 (619)
Q Consensus 404 A~n~Cl~r~~~---~adWVlFlDaDEFL~~P~~~g~~~p~~~sL~dlL~~~~ 452 (619)
+.+..+..++. .+||++|+|+|-.+ .|+ .|..+++...
T Consensus 119 A~n~g~~~A~~~~~~gd~llflDaD~~~-~p~----------~l~~lv~~~~ 159 (384)
T TIGR03469 119 AVSQGIAAARTLAPPADYLLLTDADIAH-GPD----------NLARLVARAR 159 (384)
T ss_pred HHHHHHHHHhccCCCCCEEEEECCCCCC-Chh----------HHHHHHHHHH
Confidence 56665554331 28999999999887 343 4566665543
No 24
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=98.07 E-value=2e-05 Score=76.79 Aligned_cols=88 Identities=16% Similarity=0.109 Sum_probs=63.1
Q ss_pred EEEeecchHHHHHHHHHHHHhc------CccEEEEEEcCCCccHHHHHHHHhcC-CccEEEeeCCCcchHHHHHHHHHHH
Q 043544 339 VCTMLWNQASLIREWIMYHAWL------GVERWFIYDNNSDDGIQKVIEELNLE-NYNVSRHNWPWIKTQEAGFSHCALT 411 (619)
Q Consensus 339 VctIvkNEA~~L~EWIeyH~al------GVD~f~IYDNgStD~T~eIL~~y~~~-G~~Vt~~~Wp~~~~Q~~A~n~Cl~r 411 (619)
|++.++||+++|.++|+.-... ...+++|+|++|+|+|.++++.+.+. +..+..+.-+.......+++.++..
T Consensus 1 iiip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~~i~~i~~~~n~G~~~a~~~g~~~ 80 (211)
T cd04188 1 VVIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKNPALIRVLTLPKNRGKGGAVRAGMLA 80 (211)
T ss_pred CEEcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhCCCcEEEEEcccCCCcHHHHHHHHHH
Confidence 3556799999999999875443 34589999999999999999998643 2223444333223344566666655
Q ss_pred ccCCCcEEEEeeCCcee
Q 043544 412 ARNECKWVGFFDVDEFF 428 (619)
Q Consensus 412 ~~~~adWVlFlDaDEFL 428 (619)
+ ..+||+++|+|..+
T Consensus 81 a--~gd~i~~ld~D~~~ 95 (211)
T cd04188 81 A--RGDYILFADADLAT 95 (211)
T ss_pred h--cCCEEEEEeCCCCC
Confidence 3 46999999999988
No 25
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=98.05 E-value=3.7e-05 Score=75.51 Aligned_cols=92 Identities=14% Similarity=0.166 Sum_probs=69.7
Q ss_pred EEEEEeecchHHHHHHHHHHHHhcCc----cEEEEEEcCCCccHHHHHHHHhcCCccEEEeeCCCcchHHHHHHHHHHHc
Q 043544 337 LCVCTMLWNQASLIREWIMYHAWLGV----ERWFIYDNNSDDGIQKVIEELNLENYNVSRHNWPWIKTQEAGFSHCALTA 412 (619)
Q Consensus 337 L~VctIvkNEA~~L~EWIeyH~alGV----D~f~IYDNgStD~T~eIL~~y~~~G~~Vt~~~Wp~~~~Q~~A~n~Cl~r~ 412 (619)
++|++.++|+++.|.+.|+....+.. -+++|.||+|+|++.++++.+.+....+.++.-+. .....+.|.++..+
T Consensus 2 ~sIiip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~~~~v~~i~~~~-~~~~~a~N~g~~~a 80 (249)
T cd02525 2 VSIIIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAKDPRIRLIDNPK-RIQSAGLNIGIRNS 80 (249)
T ss_pred EEEEEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhcCCeEEEEeCCC-CCchHHHHHHHHHh
Confidence 57777889999999999998766543 37999999999999999999975443355443332 22345677777764
Q ss_pred cCCCcEEEEeeCCceeecCC
Q 043544 413 RNECKWVGFFDVDEFFYFPR 432 (619)
Q Consensus 413 ~~~adWVlFlDaDEFL~~P~ 432 (619)
..||++|+|.|..+ .|.
T Consensus 81 --~~d~v~~lD~D~~~-~~~ 97 (249)
T cd02525 81 --RGDIIIRVDAHAVY-PKD 97 (249)
T ss_pred --CCCEEEEECCCccC-CHH
Confidence 68999999999987 343
No 26
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.04 E-value=6.5e-05 Score=68.67 Aligned_cols=84 Identities=17% Similarity=0.065 Sum_probs=64.6
Q ss_pred EEeecchHHHHHHHHHHHHhc--CccEEEEEEcCCCccHHHHHHHHhcCCccEEEeeCCCcchHHHHHHHHHHHccCCCc
Q 043544 340 CTMLWNQASLIREWIMYHAWL--GVERWFIYDNNSDDGIQKVIEELNLENYNVSRHNWPWIKTQEAGFSHCALTARNECK 417 (619)
Q Consensus 340 ctIvkNEA~~L~EWIeyH~al--GVD~f~IYDNgStD~T~eIL~~y~~~G~~Vt~~~Wp~~~~Q~~A~n~Cl~r~~~~ad 417 (619)
++.++|+...|.+.|+.-..+ ...+++|+|++|+|++.++++.+.. +++.+.-+.......+.+.++... .++
T Consensus 2 ii~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~---~~~~~~~~~~~g~~~a~n~~~~~~--~~~ 76 (166)
T cd04186 2 IIVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFP---EVRLIRNGENLGFGAGNNQGIREA--KGD 76 (166)
T ss_pred EEEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCC---CeEEEecCCCcChHHHhhHHHhhC--CCC
Confidence 456799999999999986554 4568999999999999999988743 355544444444456677777664 689
Q ss_pred EEEEeeCCcee
Q 043544 418 WVGFFDVDEFF 428 (619)
Q Consensus 418 WVlFlDaDEFL 428 (619)
|++|+|.|..+
T Consensus 77 ~i~~~D~D~~~ 87 (166)
T cd04186 77 YVLLLNPDTVV 87 (166)
T ss_pred EEEEECCCcEE
Confidence 99999999987
No 27
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.02 E-value=3.6e-05 Score=74.62 Aligned_cols=100 Identities=17% Similarity=0.176 Sum_probs=70.1
Q ss_pred EEeecchHHHHHHHHHHHHhc--Cc--cEEEEEEcCCCccHHHHHH-HHhcCCccEEEeeCC--CcchHHHHHHHHHHHc
Q 043544 340 CTMLWNQASLIREWIMYHAWL--GV--ERWFIYDNNSDDGIQKVIE-ELNLENYNVSRHNWP--WIKTQEAGFSHCALTA 412 (619)
Q Consensus 340 ctIvkNEA~~L~EWIeyH~al--GV--D~f~IYDNgStD~T~eIL~-~y~~~G~~Vt~~~Wp--~~~~Q~~A~n~Cl~r~ 412 (619)
++.++||...|.++|+.-..+ .. -+|+|.|++|+|++.++++ .....+..+..+..+ .......+++.++.+
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~a~n~g~~~- 80 (229)
T cd04192 2 VIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQLKILNNSRVSISGKKNALTTAIKA- 80 (229)
T ss_pred EEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHhCCCcceEEeeccCcccchhHHHHHHHHHH-
Confidence 456799999999999986544 22 4799999999999999998 322233345554443 233445677777765
Q ss_pred cCCCcEEEEeeCCceeecCCCcccCCcccchHHHHHHhcC
Q 043544 413 RNECKWVGFFDVDEFFYFPRDHRLGLLGENSLRSLVANFS 452 (619)
Q Consensus 413 ~~~adWVlFlDaDEFL~~P~~~g~~~p~~~sL~dlL~~~~ 452 (619)
..+|||+|+|.|..+ .|. .|..+++.+.
T Consensus 81 -~~~d~i~~~D~D~~~-~~~----------~l~~l~~~~~ 108 (229)
T cd04192 81 -AKGDWIVTTDADCVV-PSN----------WLLTFVAFIQ 108 (229)
T ss_pred -hcCCEEEEECCCccc-CHH----------HHHHHHHHhh
Confidence 457999999999987 343 4666666443
No 28
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=98.01 E-value=7.6e-05 Score=82.36 Aligned_cols=115 Identities=13% Similarity=0.088 Sum_probs=79.8
Q ss_pred eEEEEEEeecchHHHHHHHHHHHHhcC--ccEEEEEEcCCCccHHHHHHHHhcCCccEEEeeCCCcchHHHHHHHHHHHc
Q 043544 335 FELCVCTMLWNQASLIREWIMYHAWLG--VERWFIYDNNSDDGIQKVIEELNLENYNVSRHNWPWIKTQEAGFSHCALTA 412 (619)
Q Consensus 335 ~~L~VctIvkNEA~~L~EWIeyH~alG--VD~f~IYDNgStD~T~eIL~~y~~~G~~Vt~~~Wp~~~~Q~~A~n~Cl~r~ 412 (619)
..+++..-++||+..|.++|+.-..+. --+++|.|++|+|+|.++++++.++..++..+.-+..+....+.|..+..
T Consensus 75 p~vsViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~~v~vv~~~~n~Gka~AlN~gl~~- 153 (444)
T PRK14583 75 PLVSILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAEDPRLRVIHLAHNQGKAIALRMGAAA- 153 (444)
T ss_pred CcEEEEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhCCCEEEEEeCCCCCHHHHHHHHHHh-
Confidence 357888888999999999999855442 23799999999999999999886543335444322223344566776654
Q ss_pred cCCCcEEEEeeCCceeecCCCcccCCcccchHHHHHHhcCCCCceeEEEE
Q 043544 413 RNECKWVGFFDVDEFFYFPRDHRLGLLGENSLRSLVANFSSSKTVAEIRT 462 (619)
Q Consensus 413 ~~~adWVlFlDaDEFL~~P~~~g~~~p~~~sL~dlL~~~~~~p~vgaI~v 462 (619)
.++||++++|+|..+ .|+ .|..+++.+.+.+.++.+.-
T Consensus 154 -a~~d~iv~lDAD~~~-~~d----------~L~~lv~~~~~~~~~g~v~g 191 (444)
T PRK14583 154 -ARSEYLVCIDGDALL-DKN----------AVPYLVAPLIANPRTGAVTG 191 (444)
T ss_pred -CCCCEEEEECCCCCc-CHH----------HHHHHHHHHHhCCCeEEEEc
Confidence 468999999999987 232 55666655433345776643
No 29
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=98.00 E-value=8.1e-05 Score=71.22 Aligned_cols=91 Identities=14% Similarity=0.107 Sum_probs=64.2
Q ss_pred EEEEEEeecchH-HHHHHHHHHHHhcC--ccEEEEEEcCCCcc-HHHHHHHHhcCCccEEEeeCCCcchHHHHHHHHHHH
Q 043544 336 ELCVCTMLWNQA-SLIREWIMYHAWLG--VERWFIYDNNSDDG-IQKVIEELNLENYNVSRHNWPWIKTQEAGFSHCALT 411 (619)
Q Consensus 336 ~L~VctIvkNEA-~~L~EWIeyH~alG--VD~f~IYDNgStD~-T~eIL~~y~~~G~~Vt~~~Wp~~~~Q~~A~n~Cl~r 411 (619)
.+++++.++||. +.|.++|+.-..+- .-+++|+|++|+|+ +.++++.+......++.+.-+....-..++|.++..
T Consensus 2 ~vsiii~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~ 81 (202)
T cd04184 2 LISIVMPVYNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQDPRIKVVFREENGGISAATNSALEL 81 (202)
T ss_pred eEEEEEecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhcCCCEEEEEcccCCCHHHHHHHHHHh
Confidence 478888889999 99999999865442 23899999999986 567777775433335444333222333556666665
Q ss_pred ccCCCcEEEEeeCCcee
Q 043544 412 ARNECKWVGFFDVDEFF 428 (619)
Q Consensus 412 ~~~~adWVlFlDaDEFL 428 (619)
..++|++|+|.|..+
T Consensus 82 --a~~d~i~~ld~D~~~ 96 (202)
T cd04184 82 --ATGEFVALLDHDDEL 96 (202)
T ss_pred --hcCCEEEEECCCCcC
Confidence 357999999999987
No 30
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=97.99 E-value=6.5e-05 Score=80.28 Aligned_cols=94 Identities=14% Similarity=0.117 Sum_probs=68.7
Q ss_pred CceEEEEEEeecchHHHHHHHHHHHHhc----------CccEEEEEEcCCCccHHHHHHHHhcCC----ccEEEeeCCCc
Q 043544 333 GKFELCVCTMLWNQASLIREWIMYHAWL----------GVERWFIYDNNSDDGIQKVIEELNLEN----YNVSRHNWPWI 398 (619)
Q Consensus 333 kk~~L~VctIvkNEA~~L~EWIeyH~al----------GVD~f~IYDNgStD~T~eIL~~y~~~G----~~Vt~~~Wp~~ 398 (619)
....++++.-++||++.|.+.|+.-... +--+++|+||||+|+|.++++.+.+.. ..+..+.-+..
T Consensus 68 ~~~~isVVIP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~N 147 (333)
T PTZ00260 68 SDVDLSIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLRN 147 (333)
T ss_pred CCeEEEEEEeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCCC
Confidence 4567899999999999999988753221 245899999999999999999986431 12444444444
Q ss_pred chHHHHHHHHHHHccCCCcEEEEeeCCcee
Q 043544 399 KTQEAGFSHCALTARNECKWVGFFDVDEFF 428 (619)
Q Consensus 399 ~~Q~~A~n~Cl~r~~~~adWVlFlDaDEFL 428 (619)
..+..|++..+.. ...+||+++|+|-..
T Consensus 148 ~G~~~A~~~Gi~~--a~gd~I~~~DaD~~~ 175 (333)
T PTZ00260 148 KGKGGAVRIGMLA--SRGKYILMVDADGAT 175 (333)
T ss_pred CChHHHHHHHHHH--ccCCEEEEEeCCCCC
Confidence 4455556665554 357999999999987
No 31
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=97.97 E-value=6.1e-05 Score=78.09 Aligned_cols=93 Identities=14% Similarity=-0.083 Sum_probs=66.9
Q ss_pred EEEEeecchH-HHHHHHHHHHHhc--C--ccEEEEEEcCCCccHHHHHHHHh--cCCccEEEeeCCCcchHHHHHHHHHH
Q 043544 338 CVCTMLWNQA-SLIREWIMYHAWL--G--VERWFIYDNNSDDGIQKVIEELN--LENYNVSRHNWPWIKTQEAGFSHCAL 410 (619)
Q Consensus 338 ~VctIvkNEA-~~L~EWIeyH~al--G--VD~f~IYDNgStD~T~eIL~~y~--~~G~~Vt~~~Wp~~~~Q~~A~n~Cl~ 410 (619)
+|++.++||+ +.|.++|++-... . ..+++|+||+|+|++.+++.... +....|+++.-+....-..+.|.++.
T Consensus 1 SIIIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~ 80 (299)
T cd02510 1 SVIIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAGAR 80 (299)
T ss_pred CEEEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3677789999 9999999985543 1 13899999999999999886521 22223666555544445567777776
Q ss_pred HccCCCcEEEEeeCCceeecCCC
Q 043544 411 TARNECKWVGFFDVDEFFYFPRD 433 (619)
Q Consensus 411 r~~~~adWVlFlDaDEFL~~P~~ 433 (619)
. ...+||+|+|.|-.+ .|..
T Consensus 81 ~--A~gd~i~fLD~D~~~-~~~w 100 (299)
T cd02510 81 A--ATGDVLVFLDSHCEV-NVGW 100 (299)
T ss_pred H--ccCCEEEEEeCCccc-CccH
Confidence 6 458999999999988 4544
No 32
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=97.96 E-value=0.00011 Score=71.14 Aligned_cols=113 Identities=17% Similarity=0.172 Sum_probs=70.4
Q ss_pred EEeecchHHHHHHHHHHHHhcC-ccEEEEEEcCCCccHHHHHHHHhcCCccEEEe--eCCC-cchHHHHHHHHHHHcc--
Q 043544 340 CTMLWNQASLIREWIMYHAWLG-VERWFIYDNNSDDGIQKVIEELNLENYNVSRH--NWPW-IKTQEAGFSHCALTAR-- 413 (619)
Q Consensus 340 ctIvkNEA~~L~EWIeyH~alG-VD~f~IYDNgStD~T~eIL~~y~~~G~~Vt~~--~Wp~-~~~Q~~A~n~Cl~r~~-- 413 (619)
++.++||++.|.++|+.-..+. -.+|+|+|++|+|+|.++++ +......+..+ .++. .+.-..+.|..+....
T Consensus 2 iIp~~Ne~~~l~~~l~sl~~~~~~~eIivvdd~S~D~t~~~~~-~~~~~~~v~~i~~~~~~~~~Gk~~aln~g~~~~~~~ 80 (191)
T cd06436 2 LVPCLNEEAVIQRTLASLLRNKPNFLVLVIDDASDDDTAGIVR-LAITDSRVHLLRRHLPNARTGKGDALNAAYDQIRQI 80 (191)
T ss_pred EEeccccHHHHHHHHHHHHhCCCCeEEEEEECCCCcCHHHHHh-heecCCcEEEEeccCCcCCCCHHHHHHHHHHHHhhh
Confidence 4567999999999999865542 34799999999999999998 43222224333 2222 1222345555554432
Q ss_pred -------CCCcEEEEeeCCceeecCCCcccCCcccchHHHHHHhcCCCCceeEEEEEEE
Q 043544 414 -------NECKWVGFFDVDEFFYFPRDHRLGLLGENSLRSLVANFSSSKTVAEIRTSCH 465 (619)
Q Consensus 414 -------~~adWVlFlDaDEFL~~P~~~g~~~p~~~sL~dlL~~~~~~p~vgaI~v~w~ 465 (619)
...+||+++|+|..+ .|. .|..++..+. .|.++.+...+.
T Consensus 81 ~~~~g~~~~~d~v~~~DaD~~~-~~~----------~l~~~~~~~~-~~~v~~v~~~~~ 127 (191)
T cd06436 81 LIEEGADPERVIIAVIDADGRL-DPN----------ALEAVAPYFS-DPRVAGTQSRVR 127 (191)
T ss_pred ccccccCCCccEEEEECCCCCc-CHh----------HHHHHHHhhc-CCceEEEeeeEE
Confidence 135899999999998 343 3444443333 245666554443
No 33
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=97.95 E-value=8.8e-05 Score=73.16 Aligned_cols=112 Identities=15% Similarity=0.140 Sum_probs=73.7
Q ss_pred EEEEeecchH-HHHHHHHHHHHhcC--ccEEEEEEcCCCccHH-HHHHHHhc-CCccEEEeeCC-CcchHHHHHHHHHHH
Q 043544 338 CVCTMLWNQA-SLIREWIMYHAWLG--VERWFIYDNNSDDGIQ-KVIEELNL-ENYNVSRHNWP-WIKTQEAGFSHCALT 411 (619)
Q Consensus 338 ~VctIvkNEA-~~L~EWIeyH~alG--VD~f~IYDNgStD~T~-eIL~~y~~-~G~~Vt~~~Wp-~~~~Q~~A~n~Cl~r 411 (619)
+|++-++||+ .+|.++|+.-..+. .-+++|+||+|+|++. ++++.+.+ .+.++..+.-. ..+.+..+.|.++..
T Consensus 1 siiip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~~~~G~~~~a~n~g~~~ 80 (236)
T cd06435 1 SIHVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLPGAKAGALNYALER 80 (236)
T ss_pred CeeEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcCCCCCCchHHHHHHHHh
Confidence 3566779997 79999999876654 3489999999999874 55555432 13234333221 123344567788776
Q ss_pred ccCCCcEEEEeeCCceeecCCCcccCCcccchHHHHHHhcCCCCceeEEE
Q 043544 412 ARNECKWVGFFDVDEFFYFPRDHRLGLLGENSLRSLVANFSSSKTVAEIR 461 (619)
Q Consensus 412 ~~~~adWVlFlDaDEFL~~P~~~g~~~p~~~sL~dlL~~~~~~p~vgaI~ 461 (619)
....+|||+|+|+|-.+ .|. .|..++..+.+ +.++.+.
T Consensus 81 a~~~~d~i~~lD~D~~~-~~~----------~l~~l~~~~~~-~~~~~v~ 118 (236)
T cd06435 81 TAPDAEIIAVIDADYQV-EPD----------WLKRLVPIFDD-PRVGFVQ 118 (236)
T ss_pred cCCCCCEEEEEcCCCCc-CHH----------HHHHHHHHhcC-CCeeEEe
Confidence 65568999999999766 232 56777766653 4566553
No 34
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=97.93 E-value=7.6e-05 Score=79.43 Aligned_cols=105 Identities=16% Similarity=0.107 Sum_probs=73.1
Q ss_pred eEEEEEEeecchHHHHHHHHHHHHh----cCc-cEEEEEEcCCCccHHHHHHHHhcC-CccEEEeeCCCcchHHHHHHHH
Q 043544 335 FELCVCTMLWNQASLIREWIMYHAW----LGV-ERWFIYDNNSDDGIQKVIEELNLE-NYNVSRHNWPWIKTQEAGFSHC 408 (619)
Q Consensus 335 ~~L~VctIvkNEA~~L~EWIeyH~a----lGV-D~f~IYDNgStD~T~eIL~~y~~~-G~~Vt~~~Wp~~~~Q~~A~n~C 408 (619)
..++++.-++||++.|.+.++.-.. .+. -+|+|.|++|+|+|.++++++.+. +.++..+.......+..|++..
T Consensus 6 ~~vSVVIP~yNE~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~~~~~~v~~i~~~~n~G~~~A~~~G 85 (325)
T PRK10714 6 KKVSVVIPVYNEQESLPELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQAPDSHIVAILLNRNYGQHSAIMAG 85 (325)
T ss_pred CeEEEEEcccCchhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHhhcCCcEEEEEeCCCCCHHHHHHHH
Confidence 4589999999999999998874321 222 389999999999999999988643 4445443333333444556655
Q ss_pred HHHccCCCcEEEEeeCCceeecCCCcccCCcccchHHHHHHhcC
Q 043544 409 ALTARNECKWVGFFDVDEFFYFPRDHRLGLLGENSLRSLVANFS 452 (619)
Q Consensus 409 l~r~~~~adWVlFlDaDEFL~~P~~~g~~~p~~~sL~dlL~~~~ 452 (619)
+.. ..+||++++|+|... .|+ .|.++++...
T Consensus 86 ~~~--A~gd~vv~~DaD~q~-~p~----------~i~~l~~~~~ 116 (325)
T PRK10714 86 FSH--VTGDLIITLDADLQN-PPE----------EIPRLVAKAD 116 (325)
T ss_pred HHh--CCCCEEEEECCCCCC-CHH----------HHHHHHHHHH
Confidence 554 368999999999987 343 4566666543
No 35
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=97.92 E-value=6.8e-05 Score=73.49 Aligned_cols=90 Identities=14% Similarity=0.166 Sum_probs=63.4
Q ss_pred EEeecchHHHHHHHHHHHHhc--C-ccEEEEEEcCCCccHHHHHHHHhcC--CccEEEee----CCCcchHHHHHHHHHH
Q 043544 340 CTMLWNQASLIREWIMYHAWL--G-VERWFIYDNNSDDGIQKVIEELNLE--NYNVSRHN----WPWIKTQEAGFSHCAL 410 (619)
Q Consensus 340 ctIvkNEA~~L~EWIeyH~al--G-VD~f~IYDNgStD~T~eIL~~y~~~--G~~Vt~~~----Wp~~~~Q~~A~n~Cl~ 410 (619)
++.++|++++|.++|++-..+ . --+++|.|++|+|+|.++++++.+. ...+..+. .+.......+.|.++.
T Consensus 2 iIp~yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N~g~~ 81 (219)
T cd06913 2 ILPVHNGEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKNQAIA 81 (219)
T ss_pred EEeecCcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEecccCCCCccHHHHHHHHHH
Confidence 456799999999999987554 2 1389999999999999999997532 11132221 1222334456677776
Q ss_pred HccCCCcEEEEeeCCceeecCC
Q 043544 411 TARNECKWVGFFDVDEFFYFPR 432 (619)
Q Consensus 411 r~~~~adWVlFlDaDEFL~~P~ 432 (619)
. ...+|++|+|.|..+ .|.
T Consensus 82 ~--a~gd~i~~lD~D~~~-~~~ 100 (219)
T cd06913 82 Q--SSGRYLCFLDSDDVM-MPQ 100 (219)
T ss_pred h--cCCCEEEEECCCccC-Chh
Confidence 5 467999999999998 354
No 36
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=97.90 E-value=8.9e-05 Score=70.91 Aligned_cols=99 Identities=18% Similarity=0.164 Sum_probs=66.3
Q ss_pred EEeecchHHHHHHHHHHHHhcCc----cEEEEEEcCCCccHHHHHHHHhcCCccEEEeeCCCcchHHHHHHHHHHHc---
Q 043544 340 CTMLWNQASLIREWIMYHAWLGV----ERWFIYDNNSDDGIQKVIEELNLENYNVSRHNWPWIKTQEAGFSHCALTA--- 412 (619)
Q Consensus 340 ctIvkNEA~~L~EWIeyH~alGV----D~f~IYDNgStD~T~eIL~~y~~~G~~Vt~~~Wp~~~~Q~~A~n~Cl~r~--- 412 (619)
++-++||+..|.++|+.-..+.. -+|+|+|++|+|+|.++++.+. ..+....-+....+-.+.+..+...
T Consensus 2 vIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~~~---~~~~~~~~~~~~gk~~aln~g~~~a~~~ 78 (183)
T cd06438 2 LIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARAAG---ATVLERHDPERRGKGYALDFGFRHLLNL 78 (183)
T ss_pred EEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHHcC---CeEEEeCCCCCCCHHHHHHHHHHHHHhc
Confidence 45579999999999998665433 3689999999999999998873 2232221121223334555544433
Q ss_pred cCCCcEEEEeeCCceeecCCCcccCCcccchHHHHHHhcC
Q 043544 413 RNECKWVGFFDVDEFFYFPRDHRLGLLGENSLRSLVANFS 452 (619)
Q Consensus 413 ~~~adWVlFlDaDEFL~~P~~~g~~~p~~~sL~dlL~~~~ 452 (619)
....+|++++|+|-.+ .|. .|..+++.+.
T Consensus 79 ~~~~d~v~~~DaD~~~-~p~----------~l~~l~~~~~ 107 (183)
T cd06438 79 ADDPDAVVVFDADNLV-DPN----------ALEELNARFA 107 (183)
T ss_pred CCCCCEEEEEcCCCCC-Chh----------HHHHHHHHHh
Confidence 2468999999999998 343 4555555553
No 37
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=97.87 E-value=0.00015 Score=70.23 Aligned_cols=110 Identities=14% Similarity=0.012 Sum_probs=72.2
Q ss_pred EEEEEeecchHHHHHHHHHHHHhc--CccEEEEEEcCCCccHHHHHHHHhcCC--ccEEEeeCC---CcchHHHHHHHHH
Q 043544 337 LCVCTMLWNQASLIREWIMYHAWL--GVERWFIYDNNSDDGIQKVIEELNLEN--YNVSRHNWP---WIKTQEAGFSHCA 409 (619)
Q Consensus 337 L~VctIvkNEA~~L~EWIeyH~al--GVD~f~IYDNgStD~T~eIL~~y~~~G--~~Vt~~~Wp---~~~~Q~~A~n~Cl 409 (619)
++|++-++||+..|.++|+.-..+ .--+++|+|++|+|+|.++++.+...- ..+..+.-+ +......+++..+
T Consensus 3 vsviip~~n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~g~ 82 (196)
T cd02520 3 VSILKPLCGVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNNLIKGY 82 (196)
T ss_pred eEEEEecCCCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCCHhHHHHHHHH
Confidence 678888899999999999986543 224899999999999999999885431 223332211 2222233444444
Q ss_pred HHccCCCcEEEEeeCCceeecCCCcccCCcccchHHHHHHhcCCCCceeEE
Q 043544 410 LTARNECKWVGFFDVDEFFYFPRDHRLGLLGENSLRSLVANFSSSKTVAEI 460 (619)
Q Consensus 410 ~r~~~~adWVlFlDaDEFL~~P~~~g~~~p~~~sL~dlL~~~~~~p~vgaI 460 (619)
.. ..++|++|+|+|..+ .|. .|..+++.+.+ +.++.+
T Consensus 83 ~~--a~~d~i~~~D~D~~~-~~~----------~l~~l~~~~~~-~~~~~v 119 (196)
T cd02520 83 EE--ARYDILVISDSDISV-PPD----------YLRRMVAPLMD-PGVGLV 119 (196)
T ss_pred Hh--CCCCEEEEECCCceE-Chh----------HHHHHHHHhhC-CCCCeE
Confidence 43 458999999999876 343 45666665432 345443
No 38
>PRK10018 putative glycosyl transferase; Provisional
Probab=97.83 E-value=0.00022 Score=74.52 Aligned_cols=93 Identities=12% Similarity=0.079 Sum_probs=67.5
Q ss_pred eEEEEEEeecchHHHHHHHHHHHHhcCcc--EEEEEEcCCCccHHHHHHHHhc--CCccEEEeeCCCcchHHHHHHHHHH
Q 043544 335 FELCVCTMLWNQASLIREWIMYHAWLGVE--RWFIYDNNSDDGIQKVIEELNL--ENYNVSRHNWPWIKTQEAGFSHCAL 410 (619)
Q Consensus 335 ~~L~VctIvkNEA~~L~EWIeyH~alGVD--~f~IYDNgStD~T~eIL~~y~~--~G~~Vt~~~Wp~~~~Q~~A~n~Cl~ 410 (619)
..++|++.++|++++|.++|+.-..+-.. +++|.|++|+| .++++.+.+ ....|.++.-+.......+.|.++.
T Consensus 5 p~VSVIip~yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~--~~~~~~~~~~~~~~ri~~i~~~~n~G~~~a~N~gi~ 82 (279)
T PRK10018 5 PLISIYMPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTS--WEQLQQYVTALNDPRITYIHNDINSGACAVRNQAIM 82 (279)
T ss_pred CEEEEEEEeCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCC--HHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986655333 89999999984 334444432 1223665555555566677788876
Q ss_pred HccCCCcEEEEeeCCceeecCC
Q 043544 411 TARNECKWVGFFDVDEFFYFPR 432 (619)
Q Consensus 411 r~~~~adWVlFlDaDEFL~~P~ 432 (619)
. ...+||+|+|+|..+ .|.
T Consensus 83 ~--a~g~~I~~lDaDD~~-~p~ 101 (279)
T PRK10018 83 L--AQGEYITGIDDDDEW-TPN 101 (279)
T ss_pred H--cCCCEEEEECCCCCC-Ccc
Confidence 5 468999999999999 454
No 39
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=97.78 E-value=0.00012 Score=69.34 Aligned_cols=87 Identities=15% Similarity=-0.001 Sum_probs=60.3
Q ss_pred EEeecchHHHHHHHHHHHHhc-----CccEEEEEEcCCCccHHHHHHHHhcCCccEEEeeCCCcchHHHHHHHHHHHccC
Q 043544 340 CTMLWNQASLIREWIMYHAWL-----GVERWFIYDNNSDDGIQKVIEELNLENYNVSRHNWPWIKTQEAGFSHCALTARN 414 (619)
Q Consensus 340 ctIvkNEA~~L~EWIeyH~al-----GVD~f~IYDNgStD~T~eIL~~y~~~G~~Vt~~~Wp~~~~Q~~A~n~Cl~r~~~ 414 (619)
++.++||+..|.+.|+....+ .-.+++|.|++|+|++.++++.+.+...+++.+.-.....--.+++..+.. .
T Consensus 2 iIp~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~i~~i~~~~n~G~~~a~n~g~~~--a 79 (181)
T cd04187 2 VVPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELAARDPRVKVIRLSRNFGQQAALLAGLDH--A 79 (181)
T ss_pred EEeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHhhCCCEEEEEecCCCCcHHHHHHHHHh--c
Confidence 456799999998887754321 234899999999999999999987554345444322221223455555554 3
Q ss_pred CCcEEEEeeCCcee
Q 043544 415 ECKWVGFFDVDEFF 428 (619)
Q Consensus 415 ~adWVlFlDaDEFL 428 (619)
..+|++++|.|..+
T Consensus 80 ~~d~i~~~D~D~~~ 93 (181)
T cd04187 80 RGDAVITMDADLQD 93 (181)
T ss_pred CCCEEEEEeCCCCC
Confidence 46999999999998
No 40
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=97.77 E-value=0.00027 Score=69.44 Aligned_cols=85 Identities=19% Similarity=0.163 Sum_probs=60.8
Q ss_pred EEeecchH-HHHHHHHHHHHhcCccEEEEEEcCCCccHHHHHHHHhcCCccEEEeeCCCcchHHHHHHHHHHHccC-CCc
Q 043544 340 CTMLWNQA-SLIREWIMYHAWLGVERWFIYDNNSDDGIQKVIEELNLENYNVSRHNWPWIKTQEAGFSHCALTARN-ECK 417 (619)
Q Consensus 340 ctIvkNEA-~~L~EWIeyH~alGVD~f~IYDNgStD~T~eIL~~y~~~G~~Vt~~~Wp~~~~Q~~A~n~Cl~r~~~-~ad 417 (619)
++.++||+ ..|.++|+.-..+ ..+|+|.||+|+|.+..+++. ...+ ++.+.-+....--.++|.++..+.. ++|
T Consensus 2 vI~~yn~~~~~l~~~l~sl~~q-~~~iivvDn~s~~~~~~~~~~-~~~~--i~~i~~~~n~G~~~a~N~g~~~a~~~~~d 77 (237)
T cd02526 2 VVVTYNPDLSKLKELLAALAEQ-VDKVVVVDNSSGNDIELRLRL-NSEK--IELIHLGENLGIAKALNIGIKAALENGAD 77 (237)
T ss_pred EEEEecCCHHHHHHHHHHHhcc-CCEEEEEeCCCCccHHHHhhc-cCCc--EEEEECCCceehHHhhhHHHHHHHhCCCC
Confidence 34579998 9999999987666 678999999998887766554 2223 4444433323334566677665443 689
Q ss_pred EEEEeeCCcee
Q 043544 418 WVGFFDVDEFF 428 (619)
Q Consensus 418 WVlFlDaDEFL 428 (619)
|++|+|.|..+
T Consensus 78 ~v~~lD~D~~~ 88 (237)
T cd02526 78 YVLLFDQDSVP 88 (237)
T ss_pred EEEEECCCCCc
Confidence 99999999998
No 41
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=97.75 E-value=0.00023 Score=75.32 Aligned_cols=91 Identities=16% Similarity=0.103 Sum_probs=62.4
Q ss_pred CceEEEEEEeecchHHHHHHHHHHHHhc----CccEEEEEEcCCCccHHHHHHHHhcCCccEEEee-C---CCcchHHHH
Q 043544 333 GKFELCVCTMLWNQASLIREWIMYHAWL----GVERWFIYDNNSDDGIQKVIEELNLENYNVSRHN-W---PWIKTQEAG 404 (619)
Q Consensus 333 kk~~L~VctIvkNEA~~L~EWIeyH~al----GVD~f~IYDNgStD~T~eIL~~y~~~G~~Vt~~~-W---p~~~~Q~~A 404 (619)
....++|++-++||++.|.++|+.-..+ ..++|+|.|++|+|+|.++++.+...- +.... . +....--.+
T Consensus 29 ~~~~vSVVIPayNee~~I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~~ia~~~~~~v--~~~~~~~~~~~~n~Gkg~A 106 (306)
T PRK13915 29 AGRTVSVVLPALNEEETVGKVVDSIRPLLMEPLVDELIVIDSGSTDATAERAAAAGARV--VSREEILPELPPRPGKGEA 106 (306)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHHHHHHhccCCCcEEEEEeCCCccHHHHHHHHhcchh--hcchhhhhccccCCCHHHH
Confidence 3456888888999999999999875532 357999999999999999999873211 11100 0 111111234
Q ss_pred HHHHHHHccCCCcEEEEeeCCce
Q 043544 405 FSHCALTARNECKWVGFFDVDEF 427 (619)
Q Consensus 405 ~n~Cl~r~~~~adWVlFlDaDEF 427 (619)
.+..+.. ...|||+|+|+|-.
T Consensus 107 ~~~g~~~--a~gd~vv~lDaD~~ 127 (306)
T PRK13915 107 LWRSLAA--TTGDIVVFVDADLI 127 (306)
T ss_pred HHHHHHh--cCCCEEEEEeCccc
Confidence 4455443 46799999999987
No 42
>KOG4735 consensus Extracellular protein with conserved cysteines [Function unknown]
Probab=97.69 E-value=4.3e-05 Score=84.80 Aligned_cols=194 Identities=14% Similarity=0.095 Sum_probs=118.4
Q ss_pred CceEEEEEEeecchHHHHHHHHHHHHhcCc-cEEEEEE-cCCCccHHHHHHHHhcCCccEEEee-----CCC-cchHHHH
Q 043544 333 GKFELCVCTMLWNQASLIREWIMYHAWLGV-ERWFIYD-NNSDDGIQKVIEELNLENYNVSRHN-----WPW-IKTQEAG 404 (619)
Q Consensus 333 kk~~L~VctIvkNEA~~L~EWIeyH~alGV-D~f~IYD-NgStD~T~eIL~~y~~~G~~Vt~~~-----Wp~-~~~Q~~A 404 (619)
++..+|+-.+..+|.+.|.-|+++++.+|+ |.+.||+ .+.++..++.++.|.+.|- ++.+. |.. ...|...
T Consensus 194 p~~~vc~~~~~g~~~d~L~~~~E~~k~~g~~~~~di~~~~~~~~Y~~e~l~~y~~~~~-v~~~~~~~~~~~~~~~~~~~~ 272 (472)
T KOG4735|consen 194 PNLNVELRNQAGAETDCLLQYKEAAKFIGFFDLDDILIPRNANTYDEEFLREYVGSGN-IEVIFYQKREHRTVKTWELLQ 272 (472)
T ss_pred cccceEecccchhhhhHHHHHHHHHHHhccccHhheeeeccCchHHHHHHHHhhcCCC-eeEEEeeeeeeeeeecccccc
Confidence 336677778999999999999999999999 8888884 5556688899999998875 55443 332 2356688
Q ss_pred HHHHHHHccCCCcEEEEeeCCceeecCCCcccCCcccchHHHHHHhcCCCCceeE--EEEEEEE-eCCCCCcc------C
Q 043544 405 FSHCALTARNECKWVGFFDVDEFFYFPRDHRLGLLGENSLRSLVANFSSSKTVAE--IRTSCHS-FGPSGLSS------H 475 (619)
Q Consensus 405 ~n~Cl~r~~~~adWVlFlDaDEFL~~P~~~g~~~p~~~sL~dlL~~~~~~p~vga--I~v~w~~-FG~sG~~~------~ 475 (619)
+++|..|.+..++|.+++|+||.+.+..... .++..++..... +..+. ....|.. ++...... .
T Consensus 273 ~~dC~~r~~~~s~~~~~~dide~~~~~~p~~------~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~ 345 (472)
T KOG4735|consen 273 FNDCSLRSLFSSKWSANTDIDEGKVVVRPER------LNSTWIHRSINN-PKKAELLFVSSNVIIHKQLPAKFENGWLQL 345 (472)
T ss_pred cccccHHHHhhcceecccccccceeeccccc------cceeeeeecccC-CccceeEeeecceeEEeeccccccCccccc
Confidence 9999999999999999999999986654421 133444444322 22222 2223443 22111111 1
Q ss_pred CCCCeEEeeEee--cCCCCC-ceEEEeCCccccccccceeeEE-ecCCeeEeeeCCceeEEEeecc
Q 043544 476 PAQGVTVGYTCR--LQSPER-HKSIVRPDLLNSSLLNVVHHFR-LKAGYRYLNMPENIAVINHYKY 537 (619)
Q Consensus 476 P~~gV~~~yt~R--l~~~~r-~KsIVRp~~V~~slin~VHh~~-l~~G~~~~~l~~~~a~InHY~y 537 (619)
+....+..|... ...+.. .|+|.++..+..+ .+|... ..+|.....+....+.+.||+.
T Consensus 346 ~~~~~~~~~~~ts~~~~~~~~~K~i~~~~~v~~~---~~h~~~~~~~~~~~~~~~~~i~~~~~yr~ 408 (472)
T KOG4735|consen 346 PEEMEFLKYNETSQPINPSDNLKCIDRDEKVRML---TIHEISKLLPGLPKTDVYTPIVFKCYYRS 408 (472)
T ss_pred ceeccceeccCcccccCcccccHHHHHHHHHHHh---cchHHHHHhcCCCcccccHHHHHHHhhhh
Confidence 111111222222 112333 7999999987555 345432 2344433334445566666654
No 43
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=97.62 E-value=0.00059 Score=73.64 Aligned_cols=113 Identities=13% Similarity=0.069 Sum_probs=73.7
Q ss_pred eEEEEEEeecchHHHHHHHHHHHHhcCc--cEEEEEEcCCCccHHHHHHHHhcC--CccEEEeeCCC-cc-hHH-HHHHH
Q 043544 335 FELCVCTMLWNQASLIREWIMYHAWLGV--ERWFIYDNNSDDGIQKVIEELNLE--NYNVSRHNWPW-IK-TQE-AGFSH 407 (619)
Q Consensus 335 ~~L~VctIvkNEA~~L~EWIeyH~alGV--D~f~IYDNgStD~T~eIL~~y~~~--G~~Vt~~~Wp~-~~-~Q~-~A~n~ 407 (619)
..++|+.-++||++.|.|+|+.-..+-. -+|+|.|++|+|.+.++++++.+. +..|..+.-+. .+ ..+ .+...
T Consensus 41 p~VSViiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G~~~K~~~l~~ 120 (373)
T TIGR03472 41 PPVSVLKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARRHGPNRKVSNLIN 120 (373)
T ss_pred CCeEEEEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCCCChHHHHHHH
Confidence 3477777789999999999998766532 478889999999999999988653 22343332211 11 111 12222
Q ss_pred HHHHccCCCcEEEEeeCCceeecCCCcccCCcccchHHHHHHhcCCCCceeEEE
Q 043544 408 CALTARNECKWVGFFDVDEFFYFPRDHRLGLLGENSLRSLVANFSSSKTVAEIR 461 (619)
Q Consensus 408 Cl~r~~~~adWVlFlDaDEFL~~P~~~g~~~p~~~sL~dlL~~~~~~p~vgaI~ 461 (619)
.+. ..++||++|+|+|-.+ .|+ .|..+++.+.+ +.++.+.
T Consensus 121 ~~~--~a~ge~i~~~DaD~~~-~p~----------~L~~lv~~~~~-~~v~~V~ 160 (373)
T TIGR03472 121 MLP--HARHDILVIADSDISV-GPD----------YLRQVVAPLAD-PDVGLVT 160 (373)
T ss_pred HHH--hccCCEEEEECCCCCc-Chh----------HHHHHHHHhcC-CCcceEe
Confidence 222 2468999999999776 232 56777766643 4565544
No 44
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=97.56 E-value=0.00064 Score=63.93 Aligned_cols=87 Identities=11% Similarity=0.002 Sum_probs=60.1
Q ss_pred EEeecchHHHHHHHHHHHHhc--CccEEEEEEcCCCccHHHHHHHHhcC-CccEEEeeCCCcc-hHHHHHHHHHHHccCC
Q 043544 340 CTMLWNQASLIREWIMYHAWL--GVERWFIYDNNSDDGIQKVIEELNLE-NYNVSRHNWPWIK-TQEAGFSHCALTARNE 415 (619)
Q Consensus 340 ctIvkNEA~~L~EWIeyH~al--GVD~f~IYDNgStD~T~eIL~~y~~~-G~~Vt~~~Wp~~~-~Q~~A~n~Cl~r~~~~ 415 (619)
++.++|+...|.++|+.-..+ .-.+++|+|++|+|++.++++.+.+. ...+..+.-+..+ .-..+.|.++.. ..
T Consensus 2 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~--a~ 79 (182)
T cd06420 2 IITTYNRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAA--AK 79 (182)
T ss_pred EEeecCChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHH--hc
Confidence 456799999999999986553 34589999999999999999988642 2223222111111 112345666654 45
Q ss_pred CcEEEEeeCCcee
Q 043544 416 CKWVGFFDVDEFF 428 (619)
Q Consensus 416 adWVlFlDaDEFL 428 (619)
.+|++|+|+|..+
T Consensus 80 g~~i~~lD~D~~~ 92 (182)
T cd06420 80 GDYLIFIDGDCIP 92 (182)
T ss_pred CCEEEEEcCCccc
Confidence 7999999999977
No 45
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=97.44 E-value=0.0014 Score=57.57 Aligned_cols=87 Identities=16% Similarity=0.143 Sum_probs=61.8
Q ss_pred EEeecchHHHHHHHHHHHHhcC--ccEEEEEEcCCCccHHHHHHHHhcCCccEEEeeCCCcchHHHHHHHHHHHccCCCc
Q 043544 340 CTMLWNQASLIREWIMYHAWLG--VERWFIYDNNSDDGIQKVIEELNLENYNVSRHNWPWIKTQEAGFSHCALTARNECK 417 (619)
Q Consensus 340 ctIvkNEA~~L~EWIeyH~alG--VD~f~IYDNgStD~T~eIL~~y~~~G~~Vt~~~Wp~~~~Q~~A~n~Cl~r~~~~ad 417 (619)
++.++|+...|.+.|+.-...+ ..+++|+||+++|.+.+.+..+.+....+....-+.......+.+.++... ..+
T Consensus 2 ii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~d 79 (156)
T cd00761 2 IIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKKDPRVIRVINEENQGLAAARNAGLKAA--RGE 79 (156)
T ss_pred EEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhcCCCeEEEEecCCCChHHHHHHHHHHh--cCC
Confidence 4567899999999999877666 789999999999999999998864322122222222223334444444432 689
Q ss_pred EEEEeeCCcee
Q 043544 418 WVGFFDVDEFF 428 (619)
Q Consensus 418 WVlFlDaDEFL 428 (619)
|++++|.|..+
T Consensus 80 ~v~~~d~D~~~ 90 (156)
T cd00761 80 YILFLDADDLL 90 (156)
T ss_pred EEEEECCCCcc
Confidence 99999999888
No 46
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=97.42 E-value=0.0005 Score=67.29 Aligned_cols=114 Identities=18% Similarity=0.232 Sum_probs=66.3
Q ss_pred EEEEEeecchHHHHHHHHHHHHhc--CccEEEEEEcCCCccHHHHHHHHhcC--CccEEEeeCCC-cc--hHHHHHHHHH
Q 043544 337 LCVCTMLWNQASLIREWIMYHAWL--GVERWFIYDNNSDDGIQKVIEELNLE--NYNVSRHNWPW-IK--TQEAGFSHCA 409 (619)
Q Consensus 337 L~VctIvkNEA~~L~EWIeyH~al--GVD~f~IYDNgStD~T~eIL~~y~~~--G~~Vt~~~Wp~-~~--~Q~~A~n~Cl 409 (619)
|+|++.++||...|.+.|+....+ .--+++|.||+++|++.++++.+.+. +..++.+.-+. .+ .-..+.++++
T Consensus 3 v~Vvip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~n~~~ 82 (228)
T PF13641_consen 3 VSVVIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNPGPGGKARALNEAL 82 (228)
T ss_dssp EEEE--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHHHHHHH
T ss_pred EEEEEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcchHHHHHHHHH
Confidence 678888999999999999986543 34578899999999988887766432 11244433222 11 2235667777
Q ss_pred HHccCCCcEEEEeeCCceeecCCCcccCCcccchHHHHHHhcCCCCceeEEEEEE
Q 043544 410 LTARNECKWVGFFDVDEFFYFPRDHRLGLLGENSLRSLVANFSSSKTVAEIRTSC 464 (619)
Q Consensus 410 ~r~~~~adWVlFlDaDEFL~~P~~~g~~~p~~~sL~dlL~~~~~~p~vgaI~v~w 464 (619)
... .++|++|+|.|..+ .|. .|..+++.+. .+.++.+....
T Consensus 83 ~~~--~~d~i~~lD~D~~~-~p~----------~l~~~~~~~~-~~~~~~v~~~~ 123 (228)
T PF13641_consen 83 AAA--RGDYILFLDDDTVL-DPD----------WLERLLAAFA-DPGVGAVGGPV 123 (228)
T ss_dssp HH-----SEEEEE-SSEEE--CH----------HHHHHHHHHH-BSS--EEEEEE
T ss_pred Hhc--CCCEEEEECCCcEE-CHH----------HHHHHHHHHH-hCCCCeEeeeE
Confidence 763 48999999999998 353 4566666552 24577666443
No 47
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=97.27 E-value=0.0011 Score=64.18 Aligned_cols=82 Identities=17% Similarity=0.132 Sum_probs=59.1
Q ss_pred EEEEEeecchHHHHHHHHHHHHhc--CccEEEEEEcCCCccHHHHHHHHhcCCccEEEee-CCCcchHHHHHHHHHHHcc
Q 043544 337 LCVCTMLWNQASLIREWIMYHAWL--GVERWFIYDNNSDDGIQKVIEELNLENYNVSRHN-WPWIKTQEAGFSHCALTAR 413 (619)
Q Consensus 337 L~VctIvkNEA~~L~EWIeyH~al--GVD~f~IYDNgStD~T~eIL~~y~~~G~~Vt~~~-Wp~~~~Q~~A~n~Cl~r~~ 413 (619)
+++++.++|+++.|.++|+....+ --.+++|+||+|+|++.++++.. + +.... -++. -.+.|.++..+
T Consensus 1 vsvii~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~~~---~--~~~~~~~~g~---~~a~n~g~~~a- 71 (221)
T cd02522 1 LSIIIPTLNEAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIARSA---G--VVVISSPKGR---ARQMNAGAAAA- 71 (221)
T ss_pred CEEEEEccCcHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHhcC---C--eEEEeCCcCH---HHHHHHHHHhc-
Confidence 467777899999999999986543 23579999999999999998872 3 32222 2222 23455555543
Q ss_pred CCCcEEEEeeCCcee
Q 043544 414 NECKWVGFFDVDEFF 428 (619)
Q Consensus 414 ~~adWVlFlDaDEFL 428 (619)
.++||+++|.|..+
T Consensus 72 -~~~~i~~~D~D~~~ 85 (221)
T cd02522 72 -RGDWLLFLHADTRL 85 (221)
T ss_pred -cCCEEEEEcCCCCC
Confidence 47999999999887
No 48
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=97.25 E-value=0.0022 Score=65.66 Aligned_cols=81 Identities=14% Similarity=0.032 Sum_probs=54.1
Q ss_pred ecch-HHHHHHHHHHHHhcCccEEEEEEcCCCcc--HHHHHHHHhcCCccEEEeeCCCcchHHHHHHHHHHHc-cCCCcE
Q 043544 343 LWNQ-ASLIREWIMYHAWLGVERWFIYDNNSDDG--IQKVIEELNLENYNVSRHNWPWIKTQEAGFSHCALTA-RNECKW 418 (619)
Q Consensus 343 vkNE-A~~L~EWIeyH~alGVD~f~IYDNgStD~--T~eIL~~y~~~G~~Vt~~~Wp~~~~Q~~A~n~Cl~r~-~~~adW 418 (619)
++|. ...|.++|+.-.. ..++++|+||+|+|+ +.++++.+ .+|+++.-+....-..|+|..+..+ ...+||
T Consensus 2 tyn~~~~~l~~~l~sl~~-q~~~iiVVDN~S~~~~~~~~~~~~~----~~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~ 76 (281)
T TIGR01556 2 TFNPDLEHLGELITSLPK-QVDRIIAVDNSPHSDQPLKNARLRG----QKIALIHLGDNQGIAGAQNQGLDASFRRGVQG 76 (281)
T ss_pred ccCccHHHHHHHHHHHHh-cCCEEEEEECcCCCcHhHHHHhccC----CCeEEEECCCCcchHHHHHHHHHHHHHCCCCE
Confidence 5784 7899999987554 478999999998754 44443332 2366655444333344555554432 246899
Q ss_pred EEEeeCCcee
Q 043544 419 VGFFDVDEFF 428 (619)
Q Consensus 419 VlFlDaDEFL 428 (619)
|+++|.|..+
T Consensus 77 i~~lD~D~~~ 86 (281)
T TIGR01556 77 VLLLDQDSRP 86 (281)
T ss_pred EEEECCCCCC
Confidence 9999999988
No 49
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=97.17 E-value=0.0032 Score=75.15 Aligned_cols=116 Identities=15% Similarity=0.214 Sum_probs=75.1
Q ss_pred eEEEEEEeecchHH-HHHHHHHHHHhcC--cc--EEEEEEcCCCccHHHHHHHHhcCCccEEEeeCCCcc-hHHHHHHHH
Q 043544 335 FELCVCTMLWNQAS-LIREWIMYHAWLG--VE--RWFIYDNNSDDGIQKVIEELNLENYNVSRHNWPWIK-TQEAGFSHC 408 (619)
Q Consensus 335 ~~L~VctIvkNEA~-~L~EWIeyH~alG--VD--~f~IYDNgStD~T~eIL~~y~~~G~~Vt~~~Wp~~~-~Q~~A~n~C 408 (619)
..++|++-++||+. .+.+.|..-..+- -| +|+|.||+|+|++.++++++ |+ .++.-+... .-..+.|++
T Consensus 260 P~VsViIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~~~---~v--~yI~R~~n~~gKAGnLN~a 334 (852)
T PRK11498 260 PTVDIFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQEV---GV--KYIARPTHEHAKAGNINNA 334 (852)
T ss_pred CcEEEEEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHHHC---Cc--EEEEeCCCCcchHHHHHHH
Confidence 36778878899975 5567776533321 12 79999999999999999986 43 333223222 222457888
Q ss_pred HHHccCCCcEEEEeeCCceeecCCCcccCCcccchHHHHHHhcCCCCceeEEEEEEEEeC
Q 043544 409 ALTARNECKWVGFFDVDEFFYFPRDHRLGLLGENSLRSLVANFSSSKTVAEIRTSCHSFG 468 (619)
Q Consensus 409 l~r~~~~adWVlFlDaDEFL~~P~~~g~~~p~~~sL~dlL~~~~~~p~vgaI~v~w~~FG 468 (619)
+.. .+.|||+++|+|-.+. |+ .|+..+..+.+.|.++.+..+...++
T Consensus 335 L~~--a~GEyIavlDAD~ip~-pd----------fL~~~V~~f~~dP~VglVQtp~~f~n 381 (852)
T PRK11498 335 LKY--AKGEFVAIFDCDHVPT-RS----------FLQMTMGWFLKDKKLAMMQTPHHFFS 381 (852)
T ss_pred HHh--CCCCEEEEECCCCCCC-hH----------HHHHHHHHHHhCCCeEEEEcceeccC
Confidence 876 4679999999999862 32 55655554333356877765544443
No 50
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=96.79 E-value=0.012 Score=69.40 Aligned_cols=114 Identities=15% Similarity=0.157 Sum_probs=71.6
Q ss_pred eEEEEEEeecchHHHH-HHHHHHHHhcCc--c--EEEEEEcCCCccH--------------HHHHHHHhc-CCccEEEee
Q 043544 335 FELCVCTMLWNQASLI-REWIMYHAWLGV--E--RWFIYDNNSDDGI--------------QKVIEELNL-ENYNVSRHN 394 (619)
Q Consensus 335 ~~L~VctIvkNEA~~L-~EWIeyH~alGV--D--~f~IYDNgStD~T--------------~eIL~~y~~-~G~~Vt~~~ 394 (619)
..++|+.-++||+..+ .+.|+.-..+-- | +|+|.|++|+|+| .+.++++.+ .| +.++.
T Consensus 131 P~VsViIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~~--v~yi~ 208 (713)
T TIGR03030 131 PTVDVFIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKLG--VNYIT 208 (713)
T ss_pred CeeEEEEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHcC--cEEEE
Confidence 4688888889997655 568877544321 2 7999999999986 344444432 24 33332
Q ss_pred CCCc-chHHHHHHHHHHHccCCCcEEEEeeCCceeecCCCcccCCcccchHHHHHHhcCCCCceeEEEEE
Q 043544 395 WPWI-KTQEAGFSHCALTARNECKWVGFFDVDEFFYFPRDHRLGLLGENSLRSLVANFSSSKTVAEIRTS 463 (619)
Q Consensus 395 Wp~~-~~Q~~A~n~Cl~r~~~~adWVlFlDaDEFL~~P~~~g~~~p~~~sL~dlL~~~~~~p~vgaI~v~ 463 (619)
-+.. +.-..+.|+++.+ .+.|||+++|+|-.+. |+ .|...+..+.+.+.++.+..+
T Consensus 209 r~~n~~~KAgnLN~al~~--a~gd~Il~lDAD~v~~-pd----------~L~~~v~~f~~dp~v~~Vqtp 265 (713)
T TIGR03030 209 RPRNVHAKAGNINNALKH--TDGELILIFDADHVPT-RD----------FLQRTVGWFVEDPKLFLVQTP 265 (713)
T ss_pred CCCCCCCChHHHHHHHHh--cCCCEEEEECCCCCcC-hh----------HHHHHHHHHHhCCCEEEEeCC
Confidence 2221 1212457788766 4579999999999983 42 566666655333567766544
No 51
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=96.71 E-value=0.016 Score=60.72 Aligned_cols=115 Identities=15% Similarity=0.082 Sum_probs=73.7
Q ss_pred eEEEEEEeecchHHHHHHHHHHHHhcCcc--EEEEEEcCCCccHHHHHHHHhcCCccEEEeeCCCcchHHHHHHHHHHHc
Q 043544 335 FELCVCTMLWNQASLIREWIMYHAWLGVE--RWFIYDNNSDDGIQKVIEELNLENYNVSRHNWPWIKTQEAGFSHCALTA 412 (619)
Q Consensus 335 ~~L~VctIvkNEA~~L~EWIeyH~alGVD--~f~IYDNgStD~T~eIL~~y~~~G~~Vt~~~Wp~~~~Q~~A~n~Cl~r~ 412 (619)
..+++++.++|-.+++.+||+....+... ++++.||+|+|++.+.++... ..+|..+.-+....=..++|.-+..+
T Consensus 3 ~~i~~iiv~yn~~~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~~--~~~v~~i~~~~NlG~agg~n~g~~~a 80 (305)
T COG1216 3 PKISIIIVTYNRGEDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKARF--FPNVRLIENGENLGFAGGFNRGIKYA 80 (305)
T ss_pred cceEEEEEecCCHHHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhhc--CCcEEEEEcCCCccchhhhhHHHHHH
Confidence 46788888899999999999988776443 344579999999999999862 11355554443222223444444333
Q ss_pred cCC-CcEEEEeeCCceeecCCCcccCCcccchHHHHHHhcCCCCceeEEEE
Q 043544 413 RNE-CKWVGFFDVDEFFYFPRDHRLGLLGENSLRSLVANFSSSKTVAEIRT 462 (619)
Q Consensus 413 ~~~-adWVlFlDaDEFL~~P~~~g~~~p~~~sL~dlL~~~~~~p~vgaI~v 462 (619)
... .+|+++++-|.++ +.. .|.++++..+..+.++.+..
T Consensus 81 ~~~~~~~~l~LN~D~~~---~~~--------~l~~ll~~~~~~~~~~~~~~ 120 (305)
T COG1216 81 LAKGDDYVLLLNPDTVV---EPD--------LLEELLKAAEEDPAAGVVGP 120 (305)
T ss_pred hcCCCcEEEEEcCCeee---Chh--------HHHHHHHHHHhCCCCeEeee
Confidence 233 3399999999444 222 66777776655444544433
No 52
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.46 E-value=0.031 Score=60.49 Aligned_cols=105 Identities=21% Similarity=0.240 Sum_probs=74.5
Q ss_pred eEEEEEEeecchHH-HHHHHHHHHHhcCcc--EEEEEEcCCCccHHHHHHHHhcCC-ccEEEeeCC-C-cchHHHHHHHH
Q 043544 335 FELCVCTMLWNQAS-LIREWIMYHAWLGVE--RWFIYDNNSDDGIQKVIEELNLEN-YNVSRHNWP-W-IKTQEAGFSHC 408 (619)
Q Consensus 335 ~~L~VctIvkNEA~-~L~EWIeyH~alGVD--~f~IYDNgStD~T~eIL~~y~~~G-~~Vt~~~Wp-~-~~~Q~~A~n~C 408 (619)
..+++..-++||+. .+.++++....+-.. +++++|++++|++.++++++.++- .++... .+ . .+.=..+.+..
T Consensus 54 p~vsviiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~gK~~al~~~ 132 (439)
T COG1215 54 PKVSVIIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELGAEYGPNFRVI-YPEKKNGGKAGALNNG 132 (439)
T ss_pred CceEEEEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHHhhcCcceEEE-eccccCccchHHHHHH
Confidence 56777777899988 999999997765333 899999999999999999997542 123222 22 1 11112456666
Q ss_pred HHHccCCCcEEEEeeCCceeecCCCcccCCcccchHHHHHHhcCC
Q 043544 409 ALTARNECKWVGFFDVDEFFYFPRDHRLGLLGENSLRSLVANFSS 453 (619)
Q Consensus 409 l~r~~~~adWVlFlDaDEFL~~P~~~g~~~p~~~sL~dlL~~~~~ 453 (619)
+... ..|+|+++|+|=.+. | +.|..++..+.+
T Consensus 133 l~~~--~~d~V~~~DaD~~~~-~----------d~l~~~~~~f~~ 164 (439)
T COG1215 133 LKRA--KGDVVVILDADTVPE-P----------DALRELVSPFED 164 (439)
T ss_pred Hhhc--CCCEEEEEcCCCCCC-h----------hHHHHHHhhhcC
Confidence 6653 499999999998872 3 267888877765
No 53
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=96.22 E-value=0.03 Score=63.54 Aligned_cols=96 Identities=13% Similarity=0.133 Sum_probs=64.0
Q ss_pred ceEEEEEEeecchHHHHHHHHHHHH-hcCcc--EEEEEEcCCCccHHHHHHHHhcCCccEEEeeCC--CcchHHHHHHHH
Q 043544 334 KFELCVCTMLWNQASLIREWIMYHA-WLGVE--RWFIYDNNSDDGIQKVIEELNLENYNVSRHNWP--WIKTQEAGFSHC 408 (619)
Q Consensus 334 k~~L~VctIvkNEA~~L~EWIeyH~-alGVD--~f~IYDNgStD~T~eIL~~y~~~G~~Vt~~~Wp--~~~~Q~~A~n~C 408 (619)
...++|..-.+||++.|.+.|++-. .+--+ +|+|.|.+|+|+|.++++++.+...++..+.-+ +...--.+.|..
T Consensus 65 ~p~vaIlIPA~NE~~vI~~~l~s~L~~ldY~~~eIiVv~d~ndd~T~~~v~~l~~~~p~v~~vv~~~~gp~~Ka~aLN~~ 144 (504)
T PRK14716 65 EKRIAIFVPAWREADVIGRMLEHNLATLDYENYRIFVGTYPNDPATLREVDRLAARYPRVHLVIVPHDGPTSKADCLNWI 144 (504)
T ss_pred CCceEEEEeccCchhHHHHHHHHHHHcCCCCCeEEEEEECCCChhHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHH
Confidence 3456777778999999999999742 23212 689999999999999999887554334332222 222222355554
Q ss_pred HHHc-------cCCCcEEEEeeCCceee
Q 043544 409 ALTA-------RNECKWVGFFDVDEFFY 429 (619)
Q Consensus 409 l~r~-------~~~adWVlFlDaDEFL~ 429 (619)
+... ...+|+++++|+|-.+.
T Consensus 145 l~~~~~~e~~~G~~~d~vvi~DAD~~v~ 172 (504)
T PRK14716 145 YQAIFAFERERGIRFAIIVLHDAEDVIH 172 (504)
T ss_pred HHHHHHhhhhcCCCcCEEEEEcCCCCcC
Confidence 4321 13469999999999983
No 54
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=96.18 E-value=0.016 Score=61.71 Aligned_cols=98 Identities=16% Similarity=0.166 Sum_probs=68.7
Q ss_pred CCCceEEEEEEeecchHHHHHHHHHHHHhcCccEEEEEEcCCCccHHHHHHHHhcCCccEEEeeCCCc------c---hH
Q 043544 331 GGGKFELCVCTMLWNQASLIREWIMYHAWLGVERWFIYDNNSDDGIQKVIEELNLENYNVSRHNWPWI------K---TQ 401 (619)
Q Consensus 331 ~~kk~~L~VctIvkNEA~~L~EWIeyH~alGVD~f~IYDNgStD~T~eIL~~y~~~G~~Vt~~~Wp~~------~---~Q 401 (619)
.+.+...++.+-+|||+.+|.++|+++.- -+|+.+|--|+|+|+|.||+.++.+.-.......+|-. . .+
T Consensus 83 ~~~pl~~~~~iRvKnE~~tl~~si~S~Lp-ai~~gVI~yNdc~D~t~Eiil~fckkyP~fip~~Ypy~v~~~n~~~~~n~ 161 (347)
T PF06306_consen 83 PKSPLNPWAFIRVKNEAMTLAESIESILP-AIDEGVIGYNDCTDGTEEIILEFCKKYPSFIPIKYPYEVIIKNPKSEENS 161 (347)
T ss_pred CCCCCCcceEEEEcchhhhHHHHHHHHHH-HHhccEEEeecCCCCHHHHHHHHHHhCcccccccCcchhhccCCchhhhh
Confidence 35567788999999999999999999764 47999999999999999999999754322111112210 1 22
Q ss_pred HHHHHHHHHHccCCCcEEEEeeCCceee
Q 043544 402 EAGFSHCALTARNECKWVGFFDVDEFFY 429 (619)
Q Consensus 402 ~~A~n~Cl~r~~~~adWVlFlDaDEFL~ 429 (619)
...|.+...-.....+|++=+|+|-...
T Consensus 162 l~~YYNy~ls~ipk~~w~iKID~DhIy~ 189 (347)
T PF06306_consen 162 LYNYYNYVLSFIPKNEWAIKIDADHIYD 189 (347)
T ss_pred hhhhhhhhhcccccceEEEEeccceeec
Confidence 2223333333335689999999999884
No 55
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=95.99 E-value=0.065 Score=63.08 Aligned_cols=124 Identities=15% Similarity=0.139 Sum_probs=76.7
Q ss_pred CceEEEEEEeecchHH-----HHHHHHHHHHhcCc-c--EEEEEEcCCCccHHH--------HHHHHhcCCccEEEeeCC
Q 043544 333 GKFELCVCTMLWNQAS-----LIREWIMYHAWLGV-E--RWFIYDNNSDDGIQK--------VIEELNLENYNVSRHNWP 396 (619)
Q Consensus 333 kk~~L~VctIvkNEA~-----~L~EWIeyH~alGV-D--~f~IYDNgStD~T~e--------IL~~y~~~G~~Vt~~~Wp 396 (619)
....++|+.-++||+. .|++.+++-...+- + +|+|.|++++|++.. +.+++.. +.+|.+..=+
T Consensus 122 ~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~-~~~i~yr~R~ 200 (691)
T PRK05454 122 PEARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAELGG-EGRIFYRRRR 200 (691)
T ss_pred CCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcCC-CCcEEEEECC
Confidence 3456777777899974 57777775444433 2 689999999988643 2333321 2234443212
Q ss_pred CcchHH-HHHHHHHHHccCCCcEEEEeeCCceeecCCCcccCCcccchHHHHHHhcCCCCceeEEEEEEEEeC
Q 043544 397 WIKTQE-AGFSHCALTARNECKWVGFFDVDEFFYFPRDHRLGLLGENSLRSLVANFSSSKTVAEIRTSCHSFG 468 (619)
Q Consensus 397 ~~~~Q~-~A~n~Cl~r~~~~adWVlFlDaDEFL~~P~~~g~~~p~~~sL~dlL~~~~~~p~vgaI~v~w~~FG 468 (619)
....-+ ...++.+.+....+|||+.+|+|-.+. + + .|..++..++..|.+|.+..+...++
T Consensus 201 ~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~-~--d--------~L~~lv~~m~~dP~vGlVQt~~~~~n 262 (691)
T PRK05454 201 RNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMS-G--D--------TLVRLVRLMEANPRAGLIQTLPVAVG 262 (691)
T ss_pred cCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCC-H--H--------HHHHHHHHHhhCcCEEEEeCCccCcC
Confidence 111112 345666676667889999999999883 3 2 67777776654467888775554433
No 56
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=95.86 E-value=0.054 Score=54.77 Aligned_cols=96 Identities=11% Similarity=0.106 Sum_probs=61.4
Q ss_pred EEeecchH-HHHHHHHHHHHhcCcc------------EEEEEEcCCCccHHHHHHHHhcCCccEEEeeCCCcchHHHHH-
Q 043544 340 CTMLWNQA-SLIREWIMYHAWLGVE------------RWFIYDNNSDDGIQKVIEELNLENYNVSRHNWPWIKTQEAGF- 405 (619)
Q Consensus 340 ctIvkNEA-~~L~EWIeyH~alGVD------------~f~IYDNgStD~T~eIL~~y~~~G~~Vt~~~Wp~~~~Q~~A~- 405 (619)
++-++||+ ++|.+.|+.-..+-.. +++|.|+||+| .+.|- ...|...+
T Consensus 2 ~ip~yNE~~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~d---------~~~gk---------~~~~~~~~~ 63 (244)
T cd04190 2 CVTMYNEDEEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAIK---------KNRGK---------RDSQLWFFN 63 (244)
T ss_pred EEeeecCCHHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCccc---------ccCcc---------hHHHHHHHH
Confidence 45579996 8999999987666555 78899999999 11221 11233222
Q ss_pred --HHHHHHccCCCcEEEEeeCCceeecCCCcccCCcccchHHHHHHhcCCCCceeEEEEEEEE
Q 043544 406 --SHCALTARNECKWVGFFDVDEFFYFPRDHRLGLLGENSLRSLVANFSSSKTVAEIRTSCHS 466 (619)
Q Consensus 406 --n~Cl~r~~~~adWVlFlDaDEFL~~P~~~g~~~p~~~sL~dlL~~~~~~p~vgaI~v~w~~ 466 (619)
+..+ .....|||+++|+|=.+. |. .|..+++.+...|.++++.-....
T Consensus 64 ~~~~~~--~~a~~e~i~~~DaD~~~~-~~----------~l~~l~~~~~~~p~vg~v~g~~~~ 113 (244)
T cd04190 64 YFCRVL--FPDDPEFILLVDADTKFD-PD----------SIVQLYKAMDKDPEIGGVCGEIHP 113 (244)
T ss_pred HHHHHh--hcCCCCEEEEECCCCcCC-Hh----------HHHHHHHHHHhCCCEEEEEeeeEE
Confidence 2222 235789999999999983 43 456666555333567766554443
No 57
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=95.57 E-value=0.14 Score=52.90 Aligned_cols=120 Identities=13% Similarity=0.141 Sum_probs=70.2
Q ss_pred EEEEeecchHHH-HHHHHHHHHh----cC---ccEEEEEEcCCCccHHH--------HHHHHhcCCccEEEeeCCCc-ch
Q 043544 338 CVCTMLWNQASL-IREWIMYHAW----LG---VERWFIYDNNSDDGIQK--------VIEELNLENYNVSRHNWPWI-KT 400 (619)
Q Consensus 338 ~VctIvkNEA~~-L~EWIeyH~a----lG---VD~f~IYDNgStD~T~e--------IL~~y~~~G~~Vt~~~Wp~~-~~ 400 (619)
+|..-++||... |.+.|+.... ++ -=+|+|.|+++++.... +.+++.+ +.+|.++.-+.. +.
T Consensus 2 SIliP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI~vldD~~d~~~~~~~~~~~~~l~~~~~~-~~~v~~~~r~~~~g~ 80 (254)
T cd04191 2 AIVMPVYNEDPARVFAGLRAMYESLAKTGLADHFDFFILSDTRDPDIWLAEEAAWLDLCEELGA-QGRIYYRRRRENTGR 80 (254)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEEEEECCCCChHHHHHHHHHHHHHHHHhCC-CCcEEEEEcCCCCCc
Confidence 566667999665 7888875321 23 23688888887765431 3333432 444544332221 22
Q ss_pred HHHHHHHHHHHccCCCcEEEEeeCCceeecCCCcccCCcccchHHHHHHhcCCCCceeEEEEEEEEeCC
Q 043544 401 QEAGFSHCALTARNECKWVGFFDVDEFFYFPRDHRLGLLGENSLRSLVANFSSSKTVAEIRTSCHSFGP 469 (619)
Q Consensus 401 Q~~A~n~Cl~r~~~~adWVlFlDaDEFL~~P~~~g~~~p~~~sL~dlL~~~~~~p~vgaI~v~w~~FG~ 469 (619)
=..+++..+......+++|+++|+|-.+ .|. .|..++..+...|.++.+..++..++.
T Consensus 81 Kag~l~~~~~~~~~~~~~i~~~DaD~~~-~p~----------~l~~~v~~~~~~~~vg~vq~~~~~~n~ 138 (254)
T cd04191 81 KAGNIADFCRRWGSRYDYMVVLDADSLM-SGD----------TIVRLVRRMEANPRAGIIQTAPKLIGA 138 (254)
T ss_pred cHHHHHHHHHHhCCCCCEEEEEeCCCCC-CHH----------HHHHHHHHHHhCCCEEEEeCCceeECC
Confidence 1133445554433578999999999998 343 566666665433678888766665543
No 58
>KOG4735 consensus Extracellular protein with conserved cysteines [Function unknown]
Probab=93.94 E-value=0.62 Score=52.00 Aligned_cols=221 Identities=19% Similarity=0.309 Sum_probs=133.4
Q ss_pred cccccceeee---eeeecCCcEEEEEeeccCCCCCCCCCceeEEEeecCcCCCCCceeEEehhhhc-ccceeecCCCccc
Q 043544 184 TVHFWDKMAY---AAVLDGKTAVVFVKGLNLRPHRESDHTLFRCQFGLGHWEKDEGFAFVTEAVAA-AQEVVRCLLPRSI 259 (619)
Q Consensus 184 ~~~~w~~~~y---~a~~~~~~~vvf~kg~n~r~~~~~~~~~~~c~~~~~~~~~~~~~~~~t~~~~~-~qev~rC~~p~~~ 259 (619)
..+...-.+| .+.++|++++.+++.+|.+....-++.. =..|.. ++.-..+.+.+. ....+.|..-+..
T Consensus 10 ~~~~~i~~~~~~~~s~slg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~t~~~~~~~~~~~~~~~~~c~~~~~~ 82 (472)
T KOG4735|consen 10 FTHAFILSAYYYPTSKSLGENAVALVMTMNLRTVPNLKNEI--NLIGSN-----STSSTVTDAPSTTHEPSDSCSYVTIF 82 (472)
T ss_pred ccceEEEEeEecccccccCcceeeeeeecccccccccceeE--EEEEec-----ccceEEeccccceecccchhhhhHHH
Confidence 3445555555 5678999999999999999875555522 334433 222222444444 4678899998888
Q ss_pred cCCCCcccceEEEEEEccCccccCCCCcccccccccccccccCccccccCCccccCce-eEeccCCcccccCCCCceEEE
Q 043544 260 SKNPNKAKGIRVAVVNVNDKALDDRKPVTSVAGIRNSRYHIQGKNQRLSRDYVSMPSV-ARIHNSKSHKQRKGGGKFELC 338 (619)
Q Consensus 260 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~Psv-a~~~~~~~~~~~~~~kk~~L~ 338 (619)
++.....+.-+..+.+. | ..+.+|.. |++.+ + ..+.
T Consensus 83 ~~~~~~~~~~~~~~~s~-------------------------~-------~~~~i~~~~a~~~~---------~--~~vv 119 (472)
T KOG4735|consen 83 AQANLLPNLKKLELESE-------------------------G-------NLTEIPFKSARYSA---------P--KPVV 119 (472)
T ss_pred HhhhccCccceEEEeec-------------------------C-------CceEeeecccccCC---------C--CcEE
Confidence 77443333344555552 1 01233322 33333 1 2223
Q ss_pred EEEee-cchHHHHHHHHHH-H--HhcCccEEEEEEcCCCccHHHHHHHHhcCC-ccEEEeeCCC----------------
Q 043544 339 VCTML-WNQASLIREWIMY-H--AWLGVERWFIYDNNSDDGIQKVIEELNLEN-YNVSRHNWPW---------------- 397 (619)
Q Consensus 339 VctIv-kNEA~~L~EWIey-H--~alGVD~f~IYDNgStD~T~eIL~~y~~~G-~~Vt~~~Wp~---------------- 397 (619)
+|+-- +--.+ ...|+.. | ...|.-++.+|-..+...+-+++..|...| + ++...|..
T Consensus 120 ~~~sp~~v~~~-w~d~~~~~~~~~~~~s~~~~~~~vs~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~ep~~~ 197 (472)
T KOG4735|consen 120 VCISPQFVYEQ-WQDFLRQEHVSKRFGATHLHLYVVSCPESYFALLKEYEKLGNY-VTLPPWLPLKFRNTDEPYHEPNLN 197 (472)
T ss_pred EEecchHHHhh-HHhhhhheehhhhcCCeeEEEEEEEehHHHHHHHHHHHhcCCc-cccCCCcccccCCCCCCccCcccc
Confidence 33211 11111 2222221 1 245788999999999999999999999888 4 34444432
Q ss_pred --cchHHHHHHHHHHHccCCCcEEEEeeCCceeecCCCcccCCcccchHHHHHHhcCCCCceeEEEEE
Q 043544 398 --IKTQEAGFSHCALTARNECKWVGFFDVDEFFYFPRDHRLGLLGENSLRSLVANFSSSKTVAEIRTS 463 (619)
Q Consensus 398 --~~~Q~~A~n~Cl~r~~~~adWVlFlDaDEFL~~P~~~g~~~p~~~sL~dlL~~~~~~p~vgaI~v~ 463 (619)
.+.|..+..+|++++++.++++++.|.|.++ +|.... +-..+++..+...+.+..+.+.
T Consensus 198 vc~~~~~g~~~d~L~~~~E~~k~~g~~~~~di~-~~~~~~------~Y~~e~l~~y~~~~~v~~~~~~ 258 (472)
T KOG4735|consen 198 VELRNQAGAETDCLLQYKEAAKFIGFFDLDDIL-IPRNAN------TYDEEFLREYVGSGNIEVIFYQ 258 (472)
T ss_pred eEecccchhhhhHHHHHHHHHHHhccccHhhee-eeccCc------hHHHHHHHHhhcCCCeeEEEee
Confidence 1367788999999999999999999999999 466551 2455667666554455555543
No 59
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=93.87 E-value=0.45 Score=49.49 Aligned_cols=87 Identities=11% Similarity=0.065 Sum_probs=54.0
Q ss_pred EEEeecchH------HHHHHHHHHHHh---cCccEEEEEEcCCCccHHHHHHHHhcC-CccEEEeeCCCc---chHHHHH
Q 043544 339 VCTMLWNQA------SLIREWIMYHAW---LGVERWFIYDNNSDDGIQKVIEELNLE-NYNVSRHNWPWI---KTQEAGF 405 (619)
Q Consensus 339 VctIvkNEA------~~L~EWIeyH~a---lGVD~f~IYDNgStD~T~eIL~~y~~~-G~~Vt~~~Wp~~---~~Q~~A~ 405 (619)
|++-++|.. +.|..+|+.-.. -.--+|+|.|++|.+.+.+.|+.+.+. +. +.++.-+.. -.+..+.
T Consensus 2 iIIPv~~~~~~~~i~~~l~~~l~~l~~~~~~~~~eiIvvd~~s~~~~~~~l~~~~~~~~~-~~~i~~~~~~~~f~~a~ar 80 (281)
T PF10111_consen 2 IIIPVRNRSERPDILERLRNCLESLSQFQSDPDFEIIVVDDGSSDEFDEELKKLCEKNGF-IRYIRHEDNGEPFSRAKAR 80 (281)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCchhHHHHHHHHHhccCc-eEEEEcCCCCCCcCHHHHH
Confidence 344456654 345445554332 123379999999999886767766543 33 323322221 2555666
Q ss_pred HHHHHHccCCCcEEEEeeCCcee
Q 043544 406 SHCALTARNECKWVGFFDVDEFF 428 (619)
Q Consensus 406 n~Cl~r~~~~adWVlFlDaDEFL 428 (619)
|..+.. ..++||+|+|+|=++
T Consensus 81 N~g~~~--A~~d~l~flD~D~i~ 101 (281)
T PF10111_consen 81 NIGAKY--ARGDYLIFLDADCIP 101 (281)
T ss_pred HHHHHH--cCCCEEEEEcCCeee
Confidence 766665 479999999999888
No 60
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=93.60 E-value=0.31 Score=48.95 Aligned_cols=103 Identities=16% Similarity=0.149 Sum_probs=65.2
Q ss_pred EEEEeecchHHHHH--HHHH--HHHhcCcc-EEEEEEcCCCccHHHHHHHHhc--CCccEEEeeCCCcchHHHHHHHHHH
Q 043544 338 CVCTMLWNQASLIR--EWIM--YHAWLGVE-RWFIYDNNSDDGIQKVIEELNL--ENYNVSRHNWPWIKTQEAGFSHCAL 410 (619)
Q Consensus 338 ~VctIvkNEA~~L~--EWIe--yH~alGVD-~f~IYDNgStD~T~eIL~~y~~--~G~~Vt~~~Wp~~~~Q~~A~n~Cl~ 410 (619)
++..-++||-..|+ -|+- |-...|.+ +++|.|++|.|+|.++++.|+. .+.+|-..+--..-.--.||-|.+.
T Consensus 6 svilPtYnEk~Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~d~i~l~pR~~klGLgtAy~hgl~ 85 (238)
T KOG2978|consen 6 SVILPTYNEKENLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYGEDNILLKPRTKKLGLGTAYIHGLK 85 (238)
T ss_pred eEEeccccCCCCCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhCCCcEEEEeccCcccchHHHHhhhh
Confidence 55556699966553 3332 33445666 5999999999999999999752 2344543321111112245666666
Q ss_pred HccCCCcEEEEeeCCceeecCCCcccCCcccchHHHHHHhcCC
Q 043544 411 TARNECKWVGFFDVDEFFYFPRDHRLGLLGENSLRSLVANFSS 453 (619)
Q Consensus 411 r~~~~adWVlFlDaDEFL~~P~~~g~~~p~~~sL~dlL~~~~~ 453 (619)
. +..+++..+|+|== ... ..|.++++...+
T Consensus 86 ~--a~g~fiviMDaDls---HhP--------k~ipe~i~lq~~ 115 (238)
T KOG2978|consen 86 H--ATGDFIVIMDADLS---HHP--------KFIPEFIRLQKE 115 (238)
T ss_pred h--ccCCeEEEEeCccC---CCc--------hhHHHHHHHhhc
Confidence 5 46899999999932 222 378898887653
No 61
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=91.58 E-value=1.7 Score=47.25 Aligned_cols=113 Identities=10% Similarity=0.086 Sum_probs=71.7
Q ss_pred EEEEEeecchHHHHHHHHHHHHhc--Cc--cEEEEEEcCCCccHHHHHHHHhcCCccEEEeeCCCcchH-----------
Q 043544 337 LCVCTMLWNQASLIREWIMYHAWL--GV--ERWFIYDNNSDDGIQKVIEELNLENYNVSRHNWPWIKTQ----------- 401 (619)
Q Consensus 337 L~VctIvkNEA~~L~EWIeyH~al--GV--D~f~IYDNgStD~T~eIL~~y~~~G~~Vt~~~Wp~~~~Q----------- 401 (619)
+.|+.+++|-.++|.+.|+.-..+ ++ .++||+++|+++++.++++.+. .+ |+.+..+.....
T Consensus 2 ~PVlv~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~~~-~~--i~~i~~~~~~~~~~~~~~~~~~y 78 (334)
T cd02514 2 IPVLVIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKSFG-DG--VTHIQHPPISIKNVNPPHKFQGY 78 (334)
T ss_pred cCEEEEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHhhc-cc--cEEEEcccccccccCcccccchh
Confidence 357788899999999999986554 43 4799999999998999998883 12 333333322111
Q ss_pred ---H----HHHHHHHHHccCCCcEEEEeeCCceeecCCCcccCCcccchHHHHHHhcCCCCceeEEEE
Q 043544 402 ---E----AGFSHCALTARNECKWVGFFDVDEFFYFPRDHRLGLLGENSLRSLVANFSSSKTVAEIRT 462 (619)
Q Consensus 402 ---~----~A~n~Cl~r~~~~adWVlFlDaDEFL~~P~~~g~~~p~~~sL~dlL~~~~~~p~vgaI~v 462 (619)
. .|.+..... ..++.++++|-|=.+ .|.-- .-+.+.|.-+...+.+.+|+-
T Consensus 79 ~~ia~hyk~aln~vF~~--~~~~~vIILEDDl~~-sPdFf-------~yf~~~l~~y~~D~~v~~ISa 136 (334)
T cd02514 79 YRIARHYKWALTQTFNL--FGYSFVIILEDDLDI-APDFF-------SYFQATLPLLEEDPSLWCISA 136 (334)
T ss_pred hHHHHHHHHHHHHHHHh--cCCCEEEEECCCCcc-CHhHH-------HHHHHHHHHHhcCCCEEEEEe
Confidence 0 134444433 368999999999888 46522 123344444443345777654
No 62
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=91.54 E-value=0.9 Score=48.23 Aligned_cols=96 Identities=18% Similarity=0.128 Sum_probs=64.1
Q ss_pred CCceEEEEEEeecchH----HHHHHHHHHHHh--cC----ccEEEEEEcCCCccHHHHHHHHh-cCCc-cEEEe---eCC
Q 043544 332 GGKFELCVCTMLWNQA----SLIREWIMYHAW--LG----VERWFIYDNNSDDGIQKVIEELN-LENY-NVSRH---NWP 396 (619)
Q Consensus 332 ~kk~~L~VctIvkNEA----~~L~EWIeyH~a--lG----VD~f~IYDNgStD~T~eIL~~y~-~~G~-~Vt~~---~Wp 396 (619)
..++.|+|+.-.+||. ..|.|++.|-.. .. -.+++|.|+||+|+|.+++-+|. +.|. ++.+. ...
T Consensus 64 ~~~~~lsVIVpaynE~~ri~~mldeav~~le~ry~~~~~F~~eiiVvddgs~d~T~~~a~k~s~K~~~d~irV~~l~~nr 143 (323)
T KOG2977|consen 64 PEKMYLSVIVPAYNEEGRIGAMLDEAVDYLEKRYLSDKSFTYEIIVVDDGSTDSTVEVALKFSRKLGDDNIRVIKLKKNR 143 (323)
T ss_pred hhhceeEEEEecCCcccchHHHHHHHHHHHHHHhccCCCCceeEEEeCCCCchhHHHHHHHHHHHcCcceEEEeehhccC
Confidence 4557999999999995 466888888632 33 56899999999999999988886 4553 23222 122
Q ss_pred Ccc-hHHHHHHHHHHHccCCCcEEEEeeCCceeecCCC
Q 043544 397 WIK-TQEAGFSHCALTARNECKWVGFFDVDEFFYFPRD 433 (619)
Q Consensus 397 ~~~-~Q~~A~n~Cl~r~~~~adWVlFlDaDEFL~~P~~ 433 (619)
+.+ +=..++.+. ..+.++|.|+|--=-++..
T Consensus 144 gKGgAvR~g~l~~------rG~~ilfadAdGaTkf~d~ 175 (323)
T KOG2977|consen 144 GKGGAVRKGMLSS------RGQKILFADADGATKFADL 175 (323)
T ss_pred CCCcceehhhHhc------cCceEEEEcCCCCccCCCH
Confidence 222 222333333 5789999999976544443
No 63
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=90.00 E-value=1.6 Score=51.87 Aligned_cols=95 Identities=14% Similarity=0.111 Sum_probs=60.5
Q ss_pred eEEEEEEeecchHHHHHHHHHHHH-hcCc--cEEEEEEcCCCccHHHHHHHHhcCCccEEEe--eCCCcchHHHHHHHHH
Q 043544 335 FELCVCTMLWNQASLIREWIMYHA-WLGV--ERWFIYDNNSDDGIQKVIEELNLENYNVSRH--NWPWIKTQEAGFSHCA 409 (619)
Q Consensus 335 ~~L~VctIvkNEA~~L~EWIeyH~-alGV--D~f~IYDNgStD~T~eIL~~y~~~G~~Vt~~--~Wp~~~~Q~~A~n~Cl 409 (619)
..++|..-++||+..|.+.|++-. .+-- =+|++.++.+||+|.++++++.+.-.++..+ .-++...=-.+.|..+
T Consensus 63 ~~vsIlVPa~nE~~vi~~~i~~ll~~ldYP~~eI~vi~~~nD~~T~~~~~~l~~~~p~~~~v~~~~~g~~gKa~aLN~~l 142 (727)
T PRK11234 63 KPLAIMVPAWNETGVIGNMAELAATTLDYENYHIFVGTYPNDPATQADVDAVCARFPNVHKVVCARPGPTSKADCLNNVL 142 (727)
T ss_pred CCEEEEEecCcchhhHHHHHHHHHHhCCCCCeEEEEEecCCChhHHHHHHHHHHHCCCcEEEEeCCCCCCCHHHHHHHHH
Confidence 445666667999999999999743 2321 2677777788889999999986442223322 2233222224566655
Q ss_pred HHc-------cCCCcEEEEeeCCceee
Q 043544 410 LTA-------RNECKWVGFFDVDEFFY 429 (619)
Q Consensus 410 ~r~-------~~~adWVlFlDaDEFL~ 429 (619)
... +.+++.++++|+|-.+.
T Consensus 143 ~~~~~~e~~~~~~~~vvvi~DAD~~v~ 169 (727)
T PRK11234 143 DAITQFERSANFAFAGFILHDAEDVIS 169 (727)
T ss_pred HHHHhhhcccCCcccEEEEEcCCCCCC
Confidence 432 33567788899999983
No 64
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=80.55 E-value=23 Score=37.60 Aligned_cols=109 Identities=18% Similarity=0.197 Sum_probs=65.6
Q ss_pred CCceEEEEEEeecchHHHHHHHHHHHHhcCccE----EEEEEcCCC--ccHHHHHHHHhcC----C-----c-cEEEeeC
Q 043544 332 GGKFELCVCTMLWNQASLIREWIMYHAWLGVER----WFIYDNNSD--DGIQKVIEELNLE----N-----Y-NVSRHNW 395 (619)
Q Consensus 332 ~kk~~L~VctIvkNEA~~L~EWIeyH~alGVD~----f~IYDNgSt--D~T~eIL~~y~~~----G-----~-~Vt~~~W 395 (619)
+.+-.+-|++-++|-+.++.++...-..+--.| +=+..+.++ |++.++|+.+.+. + + .|+...-
T Consensus 22 ~~~e~VLILtplrna~~~l~~y~~~L~~L~YP~~lIsLgfLv~d~~e~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~~ 101 (269)
T PF03452_consen 22 RNKESVLILTPLRNAASFLPDYFDNLLSLTYPHELISLGFLVSDSSEFDNTLKILEAALKKLQSHGPESKRFRSITILRK 101 (269)
T ss_pred ccCCeEEEEEecCCchHHHHHHHHHHHhCCCCchheEEEEEcCCCchhHHHHHHHHHHHHHHhccCcccCCcceEEEEcC
Confidence 455667777778999999999998765554443 225566666 8888887755311 1 1 2443322
Q ss_pred CC-------------cchHH---H----HHHHHHHHccC-CCcEEEEeeCCceeecCCCcccCCcccchHHHHHHh
Q 043544 396 PW-------------IKTQE---A----GFSHCALTARN-ECKWVGFFDVDEFFYFPRDHRLGLLGENSLRSLVAN 450 (619)
Q Consensus 396 p~-------------~~~Q~---~----A~n~Cl~r~~~-~adWVlFlDaDEFL~~P~~~g~~~p~~~sL~dlL~~ 450 (619)
+. ...|. . +-|..+..... ..+||+++|+|=..+ |.. -|+++++.
T Consensus 102 df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN~LL~~aL~p~~swVlWlDaDIv~~-P~~---------lI~dli~~ 167 (269)
T PF03452_consen 102 DFGQQLSQDRSERHAFEVQRPRRRAMARARNFLLSSALGPWHSWVLWLDADIVET-PPT---------LIQDLIAH 167 (269)
T ss_pred CCcccccCchhhccchhhHHHHHHHHHHHHHHHHHhhcCCcccEEEEEecCcccC-ChH---------HHHHHHhC
Confidence 11 12343 1 12222333333 899999999998863 532 57777774
No 65
>PF11735 CAP59_mtransfer: Cryptococcal mannosyltransferase 1 ; InterPro: IPR021047 The capsule of pathogenic fungi is a complex polysaccharide whose formation is determined by a number of enzymes including, most importantly, alpha-1,3-mannosyltransferase 1 [, ]. It is responsible for addition of mannose residues in an alpha-1,3 linkage to a polymannosly precursor.
Probab=75.07 E-value=8.1 Score=40.17 Aligned_cols=48 Identities=23% Similarity=0.482 Sum_probs=34.1
Q ss_pred eEEEEEEeecchHHHHHH-----HHHHHHhcCccEEE--EEEcCCCccHHHHHHHHh
Q 043544 335 FELCVCTMLWNQASLIRE-----WIMYHAWLGVERWF--IYDNNSDDGIQKVIEELN 384 (619)
Q Consensus 335 ~~L~VctIvkNEA~~L~E-----WIeyH~alGVD~f~--IYDNgStD~T~eIL~~y~ 384 (619)
+.|++-. +|.++.|.. .|+--..+|-++++ ||.|+|.|+|.++|+.|.
T Consensus 2 ~fIA~~l--~~~~~iL~~~~~~~ll~li~~LGp~nv~vSIyE~~S~D~T~~~L~~L~ 56 (241)
T PF11735_consen 2 YFIAANL--YNNEDILPSLWGDALLELIRFLGPENVFVSIYESGSWDGTKEALRALD 56 (241)
T ss_pred EEEEEEc--ccCHhHHHHHHHHHHHHHHHHhCcCeEEEEEEeCCCCccHHHHHHHHH
Confidence 4444433 455555653 33444567999988 999999999999999885
No 66
>PF04724 Glyco_transf_17: Glycosyltransferase family 17; InterPro: IPR006813 This family represents beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (2.4.1.144 from EC). This enzyme transfers the bisecting GlcNAc to the core mannose of complex N-glycans. The addition of this residue is regulated during development and has functional consequences for receptor signalling, cell adhesion, and tumour progression [, ].; GO: 0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0016020 membrane
Probab=72.99 E-value=70 Score=35.21 Aligned_cols=117 Identities=15% Similarity=0.134 Sum_probs=62.4
Q ss_pred eEEEEEEeecchHHHHHHHHHHHHhc-CccEEEEEEcCCCc----------cHHHHHHHHhcCCccEEEe---eCCCc--
Q 043544 335 FELCVCTMLWNQASLIREWIMYHAWL-GVERWFIYDNNSDD----------GIQKVIEELNLENYNVSRH---NWPWI-- 398 (619)
Q Consensus 335 ~~L~VctIvkNEA~~L~EWIeyH~al-GVD~f~IYDNgStD----------~T~eIL~~y~~~G~~Vt~~---~Wp~~-- 398 (619)
-.|-=|.++.||.+.|+ |..+.+. =||.|+|+..+.|- ...+-++.+.. + |.++ ..+..
T Consensus 79 RrV~D~~~f~~ElDlLe--iRl~eL~~vVD~FVIvEs~~Tf~G~~KpL~f~~~~~~f~~~~~-K--Iiy~~l~~~~~~g~ 153 (356)
T PF04724_consen 79 RRVYDCFLFNNELDLLE--IRLNELYDVVDYFVIVESNRTFTGKPKPLYFAENKERFAFFHD-K--IIYVTLDDPPEKGR 153 (356)
T ss_pred CeEEEEEEeCChHHHHH--HHHHHhhCcceEEEEEEECCCcCCCCCCccHHHHHHHHHhhhc-c--eEEEEecCcCCCCC
Confidence 34555566778877663 2223222 59999999988762 12233344332 2 3222 12211
Q ss_pred -------chHHHHHHHHH-HHccCCCcEEEEeeCCceeecCCCcccCCcccchHHHHHHhcCCCCceeEEEEEEEEeC
Q 043544 399 -------KTQEAGFSHCA-LTARNECKWVGFFDVDEFFYFPRDHRLGLLGENSLRSLVANFSSSKTVAEIRTSCHSFG 468 (619)
Q Consensus 399 -------~~Q~~A~n~Cl-~r~~~~adWVlFlDaDEFL~~P~~~g~~~p~~~sL~dlL~~~~~~p~vgaI~v~w~~FG 468 (619)
..|..++..-+ .......|-+++-|+||+.. |. +| .+|+..++.+..-.+.+.|..||
T Consensus 154 ~~~w~~E~~qR~~l~~l~~~~~~~~dDliivSDvDEIP~-p~----------~l-~~Lr~cd~~p~~l~l~lr~y~Ys 219 (356)
T PF04724_consen 154 KDPWDRENYQRNALNGLLRLAGIQDDDLIIVSDVDEIPS-PE----------TL-KFLRWCDGFPEPLHLRLRFYYYS 219 (356)
T ss_pred CchhHHHHHHHHHHHHHhhhcCCCCCCEEEEcCcccccC-HH----------HH-HHHHhcCCCCCeeEEEeeceEEE
Confidence 23444442211 12456789999999999873 42 33 55666554343434555555443
No 67
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=64.41 E-value=43 Score=40.10 Aligned_cols=94 Identities=15% Similarity=0.127 Sum_probs=56.4
Q ss_pred EEEEEEeecchHHHHHHHHHHH-HhcCcc--EEEEEEcCCCccHHHHHHHHhcCCccEEEeeCCCcc--hHHHHHHHHHH
Q 043544 336 ELCVCTMLWNQASLIREWIMYH-AWLGVE--RWFIYDNNSDDGIQKVIEELNLENYNVSRHNWPWIK--TQEAGFSHCAL 410 (619)
Q Consensus 336 ~L~VctIvkNEA~~L~EWIeyH-~alGVD--~f~IYDNgStD~T~eIL~~y~~~G~~Vt~~~Wp~~~--~Q~~A~n~Cl~ 410 (619)
.++|..-.+||+..|.+.|++- ..+--. +|+|..-..|++|.++++++...-..++.+.-|..+ .--.+.|..+.
T Consensus 72 ~vsIlVPa~nE~~VI~~~v~~ll~~ldYp~~~I~v~~~~nD~~T~~~~~~~~~~~p~~~~v~~~~~gp~gKa~ALN~~l~ 151 (703)
T PRK15489 72 PLAIMVPAWKEYDVIAKMIENMLATLDYRRYVIFVGTYPNDAETITEVERMRRRYKRLVRVEVPHDGPTCKADCLNWIIQ 151 (703)
T ss_pred ceEEEEeCCCcHHHHHHHHHHHHhcCCCCCeEEEEEecCCCccHHHHHHHHhccCCcEEEEEcCCCCCCCHHHHHHHHHH
Confidence 5566666799999999999984 233222 455532233448999999886432235544444332 22245555443
Q ss_pred Hc-------cCCCcEEEEeeCCceee
Q 043544 411 TA-------RNECKWVGFFDVDEFFY 429 (619)
Q Consensus 411 r~-------~~~adWVlFlDaDEFL~ 429 (619)
.. +...+-|+.+|+|..+.
T Consensus 152 ~~~~~e~~~~~~fa~vvi~DAEd~~~ 177 (703)
T PRK15489 152 AIFRYEAGHGIEFAGVILHDSEDVLH 177 (703)
T ss_pred HHHhhhhhccCccceEEEEcCCCCCC
Confidence 21 22344589999999984
No 68
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=61.56 E-value=91 Score=31.39 Aligned_cols=105 Identities=10% Similarity=0.101 Sum_probs=56.4
Q ss_pred EEEEEee-cchHHHHHHHHHHHHhcCccEEEE-EEcCCCccHHHHHHHHhcCCccEEEe------eCCCcchHHHHHHHH
Q 043544 337 LCVCTML-WNQASLIREWIMYHAWLGVERWFI-YDNNSDDGIQKVIEELNLENYNVSRH------NWPWIKTQEAGFSHC 408 (619)
Q Consensus 337 L~VctIv-kNEA~~L~EWIeyH~alGVD~f~I-YDNgStD~T~eIL~~y~~~G~~Vt~~------~Wp~~~~Q~~A~n~C 408 (619)
||-..++ +|..+.+..++..-. -.-..|+| +|..+.+...+-++.+.+...+|..+ .|.+. .|..|.-.|
T Consensus 1 iAylil~h~~~~~~~~~l~~~l~-~~~~~f~iHiD~k~~~~~~~~~~~~~~~~~nv~~v~~r~~v~WG~~-S~v~A~l~l 78 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLLY-HPDNDFYIHIDKKSPDYFYEEIKKLISCFPNVHFVPKRVDVRWGGF-SLVEATLNL 78 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH---TTSEEEEEE-TTS-HHHHHHHHHHHCT-TTEEE-SS-----TTSH-HHHHHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHhc-CCCCEEEEEEcCCCChHHHHHHHHhcccCCceeecccccccccCCc-cHHHHHHHH
Confidence 3445666 668888888887533 23455655 56665666666566554333345433 35443 344443344
Q ss_pred HHH---ccCCCcEEEEeeCCceeecCCCcccCCcccchHHHHHHhcC
Q 043544 409 ALT---ARNECKWVGFFDVDEFFYFPRDHRLGLLGENSLRSLVANFS 452 (619)
Q Consensus 409 l~r---~~~~adWVlFlDaDEFL~~P~~~g~~~p~~~sL~dlL~~~~ 452 (619)
+.. .....+|+.++-.+.+. +.... .|.++|+...
T Consensus 79 l~~al~~~~~~~y~~llSg~D~P-l~s~~--------~i~~~l~~~~ 116 (244)
T PF02485_consen 79 LREALKRDGDWDYFILLSGQDYP-LKSNE--------EIHEFLESNN 116 (244)
T ss_dssp HHHHHHH-S---EEEEEETTEEE-SS-HH--------HHHHHHHHTT
T ss_pred HHHHHhcCCCCcEEEEccccccc-ccchH--------HHHHHHHhcC
Confidence 322 12378999999999999 45554 7999998874
No 69
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=57.78 E-value=11 Score=38.74 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=29.2
Q ss_pred HHHHHHHH-HccCCCcEEEEeeCCceeecCCCcccCCcccchHHHHHHh
Q 043544 403 AGFSHCAL-TARNECKWVGFFDVDEFFYFPRDHRLGLLGENSLRSLVAN 450 (619)
Q Consensus 403 ~A~n~Cl~-r~~~~adWVlFlDaDEFL~~P~~~g~~~p~~~sL~dlL~~ 450 (619)
.--.||+. ....+++||+|+|+|=-+.-|.. .|.++|..
T Consensus 28 fFrRHCvva~~L~~~~~vlflDaDigVvNp~~---------~iEefid~ 67 (222)
T PF03314_consen 28 FFRRHCVVAKILPEYDWVLFLDADIGVVNPNR---------RIEEFIDE 67 (222)
T ss_pred HHHHHHHHHHHhccCCEEEEEcCCceeecCcc---------cHHHhcCC
Confidence 33457874 45678999999999999965544 58999853
No 70
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=54.38 E-value=70 Score=35.47 Aligned_cols=41 Identities=20% Similarity=0.466 Sum_probs=27.6
Q ss_pred CCCcEEEEeeCCceeecCCCcccCCcccchHHHHHHhcCC-----CCceeEEEEEEEE
Q 043544 414 NECKWVGFFDVDEFFYFPRDHRLGLLGENSLRSLVANFSS-----SKTVAEIRTSCHS 466 (619)
Q Consensus 414 ~~adWVlFlDaDEFL~~P~~~g~~~p~~~sL~dlL~~~~~-----~p~vgaI~v~w~~ 466 (619)
...+||.|+|+|-|+ |. +..++...+.. ...+.-+++.|..
T Consensus 159 ~g~~YVGFiDADNyi--PG----------aV~EYvk~yAAGf~ma~spytMVRi~W~~ 204 (393)
T PRK14503 159 LGARYVGFVDADNYI--PG----------AVNEYVKIYAAGFLMAESPYTMVRIHWRY 204 (393)
T ss_pred hCCCeEeEeecccCC--Cc----------hHHHHHHHHHhhhcccCCCCceEEEEecC
Confidence 478999999999998 64 34555554321 1235567888875
No 71
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=53.42 E-value=76 Score=35.03 Aligned_cols=41 Identities=22% Similarity=0.519 Sum_probs=27.6
Q ss_pred CCCcEEEEeeCCceeecCCCcccCCcccchHHHHHHhcCC-----CCceeEEEEEEEE
Q 043544 414 NECKWVGFFDVDEFFYFPRDHRLGLLGENSLRSLVANFSS-----SKTVAEIRTSCHS 466 (619)
Q Consensus 414 ~~adWVlFlDaDEFL~~P~~~g~~~p~~~sL~dlL~~~~~-----~p~vgaI~v~w~~ 466 (619)
...+||.|+|+|-|+ |. +..++...+.. ...+.-+++.|..
T Consensus 158 ~g~~YVGFiDaDNyi--PG----------aV~EYvk~yAaGf~ma~spy~MVRi~W~~ 203 (381)
T TIGR02460 158 IGAEYVGFVDADNYF--PG----------AVNEYVKIYAAGFLMATSPYSMVRIHWRY 203 (381)
T ss_pred hCCceEeEeecccCC--Cc----------hHHHHHHHHHhhhcccCCCCeeEEEEecC
Confidence 478999999999998 64 34555554321 1235567888875
No 72
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=49.98 E-value=63 Score=31.24 Aligned_cols=78 Identities=8% Similarity=-0.086 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhcCccEEEEEEcCCCccHHHHHHHHhcCCccEEEeeCCCcchHHHHHHHHHHHccCCCcEEEEeeCCcee
Q 043544 349 LIREWIMYHAWLGVERWFIYDNNSDDGIQKVIEELNLENYNVSRHNWPWIKTQEAGFSHCALTARNECKWVGFFDVDEFF 428 (619)
Q Consensus 349 ~L~EWIeyH~alGVD~f~IYDNgStD~T~eIL~~y~~~G~~Vt~~~Wp~~~~Q~~A~n~Cl~r~~~~adWVlFlDaDEFL 428 (619)
.|.-.|+.-...|+++++|..+...+.+.+.+......|..+....-+....+..++..++... ..+.++++++|-++
T Consensus 31 li~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~--~~~~~lv~~~D~~~ 108 (217)
T cd04181 31 ILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDGSKFGVNIEYVVQEEPLGTAGAVRNAEDFL--GDDDFLVVNGDVLT 108 (217)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcChhhcCceEEEEeCCCCCccHHHHHHhhhhc--CCCCEEEEECCeec
Confidence 3444444444569999999988755555554443322244454433222233344444444332 46889999999865
No 73
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=48.93 E-value=63 Score=34.34 Aligned_cols=98 Identities=15% Similarity=0.297 Sum_probs=51.6
Q ss_pred CceEEEEEE-eecchHHHHHHHHHH---HHhcCccE-EEEEEcCCCccHHHH-HHHHhcCCccEEE----eeCCCcchHH
Q 043544 333 GKFELCVCT-MLWNQASLIREWIMY---HAWLGVER-WFIYDNNSDDGIQKV-IEELNLENYNVSR----HNWPWIKTQE 402 (619)
Q Consensus 333 kk~~L~Vct-IvkNEA~~L~EWIey---H~alGVD~-f~IYDNgStD~T~eI-L~~y~~~G~~Vt~----~~Wp~~~~Q~ 402 (619)
.+.+|++.. .++.-..++..|+++ |...|.+. +||+.+... ....+ |.+.. .+.|.. ..||...-..
T Consensus 32 ~n~tIgl~vfatGkY~~f~~~F~~SAEk~Fm~g~~v~YyVFTD~~~-~~p~v~lg~~r--~~~V~~v~~~~~W~~~sl~R 108 (271)
T cd02515 32 QNITIGLTVFAVGKYTEFLERFLESAEKHFMVGYRVIYYIFTDKPA-AVPEVELGPGR--RLTVLKIAEESRWQDISMRR 108 (271)
T ss_pred cCCEEEEEEEEeccHHHHHHHHHHHHHHhccCCCeeEEEEEeCCcc-cCcccccCCCc--eeEEEEeccccCCcHHHHHH
Confidence 345555553 346666799999986 44457774 445554322 11111 11110 112221 2466543222
Q ss_pred -HHH-HHHHHHccCCCcEEEEeeCCceeecCCC
Q 043544 403 -AGF-SHCALTARNECKWVGFFDVDEFFYFPRD 433 (619)
Q Consensus 403 -~A~-n~Cl~r~~~~adWVlFlDaDEFL~~P~~ 433 (619)
..+ .++..+...++|+++|+|+|=.+.-+-+
T Consensus 109 m~~~~~~~~~~~~~e~DYlF~~dvd~~F~~~ig 141 (271)
T cd02515 109 MKTLADHIADRIGHEVDYLFCMDVDMVFQGPFG 141 (271)
T ss_pred HHHHHHHHHHhhcccCCEEEEeeCCceEeecCC
Confidence 223 2333445678999999999988864444
No 74
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=40.31 E-value=1.4e+02 Score=35.85 Aligned_cols=117 Identities=15% Similarity=0.235 Sum_probs=61.1
Q ss_pred eEEEEEEeecchHHHHHHHHHHHHhcCccEEEEEEcCCC----ccH---HHHHHHHhc----CCccEEEeeCCCc-----
Q 043544 335 FELCVCTMLWNQASLIREWIMYHAWLGVERWFIYDNNSD----DGI---QKVIEELNL----ENYNVSRHNWPWI----- 398 (619)
Q Consensus 335 ~~L~VctIvkNEA~~L~EWIeyH~alGVD~f~IYDNgSt----D~T---~eIL~~y~~----~G~~Vt~~~Wp~~----- 398 (619)
..++++.-+|||.-.|.|=+-. .+=-|-.+|.-+||+ |.. .++++.+.+ .++ +-.+.-|+.
T Consensus 55 ~~~aivvp~k~e~~~~~~gvl~--~ip~~c~ii~vsns~r~~~d~~~~e~~~~~~~~~~~~~~~~-~vhq~dp~~a~a~~ 131 (694)
T PRK14502 55 KKMAIVLPIKDEDLKVFEGVLS--GIPHDCLMIVISNSSKQEVDNFKNEKDIVNRFCRITHRQAI-VVHQKNPELANAIA 131 (694)
T ss_pred hCcEEEEEcCCCchhHHhhHhh--cCCCCCeEEEEeCCCCCchHHHHHHHHHHHHHHHhhcCceE-EEEcCCHHHHHHHH
Confidence 3467777789998777776643 333344555555553 322 344554432 222 212222321
Q ss_pred ----------------chHHHHHHHHHHHccCCCcEEEEeeCCceeecCCCcccCCcccchHHHHHHhcCC-----CCce
Q 043544 399 ----------------KTQEAGFSHCALTARNECKWVGFFDVDEFFYFPRDHRLGLLGENSLRSLVANFSS-----SKTV 457 (619)
Q Consensus 399 ----------------~~Q~~A~n~Cl~r~~~~adWVlFlDaDEFL~~P~~~g~~~p~~~sL~dlL~~~~~-----~p~v 457 (619)
+.-+.++-=.++......+||.|+|+|-|+ |. +..+|...+.. ...+
T Consensus 132 ~~g~~~~~~~~~~vr~gk~egm~~g~~la~~~g~~yvgfidadny~--pg----------~v~ey~~~yaag~~~~~~~~ 199 (694)
T PRK14502 132 DAGYPELLGEDGLIRSGKAEGMILGIILTMFSGRDYVGFIDTDNYI--PG----------AVWEYAKHFATGFNLAQSPY 199 (694)
T ss_pred HcCChhhhCCCCceecCcchHHHHHHHHHHhcCCceEeEeeccCCC--Cc----------hHHHHHHHHHhhhcccCCCC
Confidence 111111111122224578999999999998 64 44555554421 1235
Q ss_pred eEEEEEEEE
Q 043544 458 AEIRTSCHS 466 (619)
Q Consensus 458 gaI~v~w~~ 466 (619)
.-+++.|..
T Consensus 200 ~mvri~w~~ 208 (694)
T PRK14502 200 SMVRILWKY 208 (694)
T ss_pred eeEEEEecC
Confidence 567888875
No 75
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=38.79 E-value=1.7e+02 Score=34.23 Aligned_cols=116 Identities=15% Similarity=0.169 Sum_probs=61.4
Q ss_pred CceEEEEEEeecchH-HH----HHHHHHHHHhcC----ccEEEEEEcCCCc-------cHHHHHHHHhcCCccEEEeeCC
Q 043544 333 GKFELCVCTMLWNQA-SL----IREWIMYHAWLG----VERWFIYDNNSDD-------GIQKVIEELNLENYNVSRHNWP 396 (619)
Q Consensus 333 kk~~L~VctIvkNEA-~~----L~EWIeyH~alG----VD~f~IYDNgStD-------~T~eIL~~y~~~G~~Vt~~~Wp 396 (619)
+.+.-++..-++||. .. |+.--++-+.-| +|-|++-|++..| ...++.++....| +|-+ .+.
T Consensus 142 ~~hrTAilmPiynEd~~rVfAgLrA~~eSla~Tg~~~~FD~FVLSDs~dpdialAEq~a~~~l~~e~~g~~-~ifY-RrR 219 (736)
T COG2943 142 DLHRTAILMPIYNEDVNRVFAGLRATYESLAATGHAEHFDFFVLSDSRDPDIALAEQKAWAELCRELGGEG-NIFY-RRR 219 (736)
T ss_pred cccceeEEeeccccCHHHHHHHHHHHHHHHHhhCCcccceEEEEcCCCCchhhhhHHHHHHHHHHHhCCCC-ceee-ehH
Confidence 334456667779993 22 233333332223 4444444443322 1233445543333 3432 232
Q ss_pred C--cchHHHHHHHHHHHccCCCcEEEEeeCCceeecCCCcccCCcccchHHHHHHhcCCCCceeEEE
Q 043544 397 W--IKTQEAGFSHCALTARNECKWVGFFDVDEFFYFPRDHRLGLLGENSLRSLVANFSSSKTVAEIR 461 (619)
Q Consensus 397 ~--~~~Q~~A~n~Cl~r~~~~adWVlFlDaDEFL~~P~~~g~~~p~~~sL~dlL~~~~~~p~vgaI~ 461 (619)
. .+.-...+.|...|....+++|+.+|+|-... + . .+..+.+..+..|++|-|.
T Consensus 220 r~n~~RKaGNIaDfcrRwG~~Y~~MlVLDADSvMt-g--d--------~lvrLv~~ME~~P~aGlIQ 275 (736)
T COG2943 220 RRNVKRKAGNIADFCRRWGSAYSYMLVLDADSVMT-G--D--------CLVRLVRLMEANPDAGLIQ 275 (736)
T ss_pred hhhhcccccCHHHHHHHhCcccceEEEeecccccC-c--h--------HHHHHHHHHhhCCCCceee
Confidence 2 12222346677888999999999999999873 2 2 4555555555445676554
No 76
>PF09488 Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth); InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus (Rhodothermus obamensis), this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm; PDB: 2WVM_A 2WVL_A 2WVK_A 2ZU7_B 2ZU9_B 2ZU8_A.
Probab=37.66 E-value=1.3e+02 Score=33.43 Aligned_cols=117 Identities=15% Similarity=0.244 Sum_probs=51.0
Q ss_pred EEEEEEeecchHHHHHHHHHHHHhcCccEEE-EEEcCCC---ccH---HHHHHHHhcCC-ccE-EEe-eCCCc-------
Q 043544 336 ELCVCTMLWNQASLIREWIMYHAWLGVERWF-IYDNNSD---DGI---QKVIEELNLEN-YNV-SRH-NWPWI------- 398 (619)
Q Consensus 336 ~L~VctIvkNEA~~L~EWIeyH~alGVD~f~-IYDNgSt---D~T---~eIL~~y~~~G-~~V-t~~-~Wp~~------- 398 (619)
.++++.-+|||.-.|.|=+-. .+=.+=.+ |+.|.+. |.. .++|+.+-+.. -.+ ..| .-|+.
T Consensus 51 ~maIVVP~KnE~l~lleGVL~--gIPh~C~IIvVSNS~r~~~d~f~~E~d~l~~f~~~t~r~~~~vHQkDp~lA~Af~~a 128 (381)
T PF09488_consen 51 KMAIVVPCKNEKLKLLEGVLS--GIPHDCLIIVVSNSSREPVDRFKMEVDLLKHFCRLTRRQIIIVHQKDPGLAEAFKEA 128 (381)
T ss_dssp TEEEEEEESS--HHHHHHHHH--CS-TTSEEEEEE---CSSSCHHHHHHHHHHHHHHHCT--EEEEETT-HHHHHHHHHT
T ss_pred CcEEEEECCCCchhhhhhhhh--cCCCCCeEEEEECCCCCCccHHHHHHHHHHHHHHhhcCceEEEecCCHHHHHHHHHc
Confidence 467777789998778776644 33333344 4555444 432 45566553211 111 222 11210
Q ss_pred --------------chHHHHHHHHHHHccCCCcEEEEeeCCceeecCCCcccCCcccchHHHHHHhcCC-----CCceeE
Q 043544 399 --------------KTQEAGFSHCALTARNECKWVGFFDVDEFFYFPRDHRLGLLGENSLRSLVANFSS-----SKTVAE 459 (619)
Q Consensus 399 --------------~~Q~~A~n~Cl~r~~~~adWVlFlDaDEFL~~P~~~g~~~p~~~sL~dlL~~~~~-----~p~vga 459 (619)
+.-+.++-=-+.......+||.|+|+|-|+ |. ++.++...+.. ...+.-
T Consensus 129 Gy~~il~~~g~VR~GKgEGMiiGillAk~~g~~YVGFvDADNyi--PG----------aV~EYvk~yAAGf~ms~spytM 196 (381)
T PF09488_consen 129 GYPEILDEDGLVRNGKGEGMIIGILLAKAPGKRYVGFVDADNYI--PG----------AVNEYVKDYAAGFAMSESPYTM 196 (381)
T ss_dssp T--TTB-TTSSB-SSHHHHHHHHHHHHHHTT-SEEEE--TTBS---HH----------HHHHHHHHHHHHHHC-SSSCEE
T ss_pred CcHHHhCCCCceecCchHHHHHHHHHHHhcCCceEeEeeccCCC--cc----------hHHHHHHHHHhhhcccCCCceE
Confidence 111211111122223578999999999998 53 45555554311 124667
Q ss_pred EEEEEEE
Q 043544 460 IRTSCHS 466 (619)
Q Consensus 460 I~v~w~~ 466 (619)
+++.|+.
T Consensus 197 VRi~W~~ 203 (381)
T PF09488_consen 197 VRIHWRS 203 (381)
T ss_dssp EEEE---
T ss_pred EEEEecC
Confidence 8899985
No 77
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=35.37 E-value=1.3e+02 Score=32.63 Aligned_cols=55 Identities=20% Similarity=0.301 Sum_probs=42.2
Q ss_pred ceEEEEE-EeecchHHHH---HHHHHHHHhcCccEEEEEEcCCCccHHHHHHHHhcCCcc
Q 043544 334 KFELCVC-TMLWNQASLI---REWIMYHAWLGVERWFIYDNNSDDGIQKVIEELNLENYN 389 (619)
Q Consensus 334 k~~L~Vc-tIvkNEA~~L---~EWIeyH~alGVD~f~IYDNgStD~T~eIL~~y~~~G~~ 389 (619)
...|+-| ...+...+.| .||+++-+.+| ..+++..|+|+-.-.+.+++....|++
T Consensus 23 DtfifDcDGVlW~g~~~ipGs~e~l~~L~~~g-K~i~fvTNNStksr~~y~kK~~~lG~~ 81 (306)
T KOG2882|consen 23 DTFIFDCDGVLWLGEKPIPGSPEALNLLKSLG-KQIIFVTNNSTKSREQYMKKFAKLGFN 81 (306)
T ss_pred CEEEEcCCcceeecCCCCCChHHHHHHHHHcC-CcEEEEeCCCcchHHHHHHHHHHhCcc
Confidence 3455555 2334444444 89999999999 999999999999888888988888974
No 78
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=34.21 E-value=2.9e+02 Score=27.80 Aligned_cols=67 Identities=15% Similarity=0.138 Sum_probs=40.0
Q ss_pred cEEEEEEcCCCccHHHHHHHHhcC-CccEEEeeC--CCcc-h---H----HHHHHH-HHHHccCCCcEEEEeeCCceee
Q 043544 363 ERWFIYDNNSDDGIQKVIEELNLE-NYNVSRHNW--PWIK-T---Q----EAGFSH-CALTARNECKWVGFFDVDEFFY 429 (619)
Q Consensus 363 D~f~IYDNgStD~T~eIL~~y~~~-G~~Vt~~~W--p~~~-~---Q----~~A~n~-Cl~r~~~~adWVlFlDaDEFL~ 429 (619)
-+|+|+.++.++...+.|+.+... +..|+.+.. +... . + ..+|.. .+...-.+.+.|+++|+|-++.
T Consensus 31 ~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~y~rl~l~~ll~~~~rvlylD~D~lv~ 109 (248)
T cd04194 31 YDFYILNDDISEENKKKLKELLKKYNSSIEFIKIDNDDFKFFPATTDHISYATYYRLLIPDLLPDYDKVLYLDADIIVL 109 (248)
T ss_pred eEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEcCHHHHhcCCcccccccHHHHHHHHHHHHhcccCEEEEEeCCEEec
Confidence 378888888888888888887542 444544432 2110 0 1 122222 2222334699999999999984
No 79
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=32.37 E-value=1.8e+02 Score=28.05 Aligned_cols=69 Identities=10% Similarity=0.008 Sum_probs=34.9
Q ss_pred HhcCccEEEEEEcCCCccHHHHHHHHhcCCccEEEeeCCCcchHHHHHHHHHHHccCCCcEEEEeeCCcee
Q 043544 358 AWLGVERWFIYDNNSDDGIQKVIEELNLENYNVSRHNWPWIKTQEAGFSHCALTARNECKWVGFFDVDEFF 428 (619)
Q Consensus 358 ~alGVD~f~IYDNgStD~T~eIL~~y~~~G~~Vt~~~Wp~~~~Q~~A~n~Cl~r~~~~adWVlFlDaDEFL 428 (619)
...|+++++|..+...+.+.+.+.....-|..+....-........++..++.. . ..++++++.+|.++
T Consensus 40 ~~~g~~~v~vv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~a~~~-~-~~~~~lv~~~D~~~ 108 (223)
T cd06915 40 ARQGISRIVLSVGYLAEQIEEYFGDGYRGGIRIYYVIEPEPLGTGGAIKNALPK-L-PEDQFLVLNGDTYF 108 (223)
T ss_pred HHCCCCEEEEEcccCHHHHHHHHcCccccCceEEEEECCCCCcchHHHHHHHhh-c-CCCCEEEEECCccc
Confidence 345999999987655454444444221113323221111111112333333332 2 35899999999865
No 80
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=32.35 E-value=3.7e+02 Score=24.69 Aligned_cols=87 Identities=17% Similarity=0.114 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcCccEEEEEEcCCCccHHHHHHHHhcCCccEEEeeCCCcchHHHHHHHHHHHccCCCcEEEEeeCCcee
Q 043544 349 LIREWIMYHAWLGVERWFIYDNNSDDGIQKVIEELNLENYNVSRHNWPWIKTQEAGFSHCALTARNECKWVGFFDVDEFF 428 (619)
Q Consensus 349 ~L~EWIeyH~alGVD~f~IYDNgStD~T~eIL~~y~~~G~~Vt~~~Wp~~~~Q~~A~n~Cl~r~~~~adWVlFlDaDEFL 428 (619)
.|.--|+--...|+++|+|..+. + ++.+.+...++.+.... .+......++..++.... ..+|++++-+|=-+
T Consensus 26 li~~~l~~l~~~~~~~Ivvv~~~--~---~~~~~~~~~~~~~v~~~-~~~~G~~~sl~~a~~~~~-~~~~vlv~~~D~p~ 98 (160)
T PF12804_consen 26 LIERVLEALREAGVDDIVVVTGE--E---EIYEYLERYGIKVVVDP-EPGQGPLASLLAALSQLP-SSEPVLVLPCDQPF 98 (160)
T ss_dssp HHHHHHHHHHHHTESEEEEEEST--H---HHHHHHTTTTSEEEE-S-TSSCSHHHHHHHHHHTST-TSSEEEEEETTETT
T ss_pred HHHHHHHHhhccCCceEEEecCh--H---HHHHHHhccCceEEEec-cccCChHHHHHHHHHhcc-cCCCcEEEeCCccc
Confidence 34444444455689999999987 3 34444444454332221 122444555555554422 78999999999854
Q ss_pred ecCCCcccCCcccchHHHHHHhcC
Q 043544 429 YFPRDHRLGLLGENSLRSLVANFS 452 (619)
Q Consensus 429 ~~P~~~g~~~p~~~sL~dlL~~~~ 452 (619)
..+ +.|..+++...
T Consensus 99 ~~~----------~~l~~l~~~~~ 112 (160)
T PF12804_consen 99 LSP----------ELLRRLLEALE 112 (160)
T ss_dssp S-H----------HHHHHHHHHHH
T ss_pred cCH----------HHHHHHHHHHh
Confidence 222 25666666643
No 81
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=32.25 E-value=1.3e+02 Score=33.37 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhcCccEEEEEEcCCC
Q 043544 348 SLIREWIMYHAWLGVERWFIYDNNSD 373 (619)
Q Consensus 348 ~~L~EWIeyH~alGVD~f~IYDNgSt 373 (619)
+.-+|-|-.-+.+||++|+||-|--|
T Consensus 156 PQTrEHlLLArQVGV~~ivvfiNKvD 181 (449)
T KOG0460|consen 156 PQTREHLLLARQVGVKHIVVFINKVD 181 (449)
T ss_pred cchHHHHHHHHHcCCceEEEEEeccc
Confidence 45567676667789999999999875
No 82
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=31.45 E-value=1.6e+02 Score=28.85 Aligned_cols=89 Identities=11% Similarity=0.035 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhcCccEEEEEEcCCCccHHHHHHHHhcCCccEEEeeCCCcchHHHHHHHHHHHccCCCcEEEEeeCCcee
Q 043544 349 LIREWIMYHAWLGVERWFIYDNNSDDGIQKVIEELNLENYNVSRHNWPWIKTQEAGFSHCALTARNECKWVGFFDVDEFF 428 (619)
Q Consensus 349 ~L~EWIeyH~alGVD~f~IYDNgStD~T~eIL~~y~~~G~~Vt~~~Wp~~~~Q~~A~n~Cl~r~~~~adWVlFlDaDEFL 428 (619)
.|...|+.-...|+++++|..+...+...+.+.. .++ +...-+....+..++.+|+.......+.++++++|.-+
T Consensus 28 li~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~---~~~--~~~~~~~~~g~~~ai~~a~~~~~~~~~~vli~~~D~p~ 102 (229)
T cd02540 28 MLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN---PNV--EFVLQEEQLGTGHAVKQALPALKDFEGDVLVLYGDVPL 102 (229)
T ss_pred HHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC---CCc--EEEECCCCCCCHHHHHHHHHhhccCCCeEEEEeCCccc
Confidence 3333344434569999888886544444444333 243 32221222334455556655432236889999999944
Q ss_pred ecCCCcccCCcccchHHHHHHhcC
Q 043544 429 YFPRDHRLGLLGENSLRSLVANFS 452 (619)
Q Consensus 429 ~~P~~~g~~~p~~~sL~dlL~~~~ 452 (619)
+.+ ..+..+++.+.
T Consensus 103 ~~~----------~~i~~l~~~~~ 116 (229)
T cd02540 103 ITP----------ETLQRLLEAHR 116 (229)
T ss_pred cCH----------HHHHHHHHHHH
Confidence 222 25666666543
No 83
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=30.85 E-value=1.1e+02 Score=27.26 Aligned_cols=40 Identities=18% Similarity=0.042 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCccEEEEEEcCCCccHHHHHHHHhcCCccE
Q 043544 350 IREWIMYHAWLGVERWFIYDNNSDDGIQKVIEELNLENYNV 390 (619)
Q Consensus 350 L~EWIeyH~alGVD~f~IYDNgStD~T~eIL~~y~~~G~~V 390 (619)
-.|+|++.+..| -.+++..|+++....++++.|.+.|+++
T Consensus 19 a~e~l~~L~~~g-~~~~~lTNns~~s~~~~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 19 AVEALDALRERG-KPVVFLTNNSSRSREEYAKKLKKLGIPV 58 (101)
T ss_dssp HHHHHHHHHHTT-SEEEEEES-SSS-HHHHHHHHHHTTTT-
T ss_pred HHHHHHHHHHcC-CCEEEEeCCCCCCHHHHHHHHHhcCcCC
Confidence 367777776666 5788899999888888888888889854
No 84
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=29.84 E-value=1.9e+02 Score=27.01 Aligned_cols=90 Identities=13% Similarity=0.046 Sum_probs=46.0
Q ss_pred HHHHHHHH-HHHhcCccEEEEEEcCCCccHHHHHHHHhcCCccEEEeeCCC-cchHHHHHHHHHHHccCCCcEEEEeeCC
Q 043544 348 SLIREWIM-YHAWLGVERWFIYDNNSDDGIQKVIEELNLENYNVSRHNWPW-IKTQEAGFSHCALTARNECKWVGFFDVD 425 (619)
Q Consensus 348 ~~L~EWIe-yH~alGVD~f~IYDNgStD~T~eIL~~y~~~G~~Vt~~~Wp~-~~~Q~~A~n~Cl~r~~~~adWVlFlDaD 425 (619)
+.|.||+. --...|+++++|..+...+. +...+...+. ..+..+. ......++..++......++|++++.+|
T Consensus 26 ~~li~~~i~~l~~~~~~~i~vv~~~~~~~---~~~~~~~~~~--~~~~~~~~~~G~~~~i~~al~~~~~~~~~vlv~~~D 100 (186)
T cd04182 26 KPLLRHALDAALAAGLSRVIVVLGAEADA---VRAALAGLPV--VVVINPDWEEGMSSSLAAGLEALPADADAVLILLAD 100 (186)
T ss_pred eeHHHHHHHHHHhCCCCcEEEECCCcHHH---HHHHhcCCCe--EEEeCCChhhCHHHHHHHHHHhccccCCEEEEEeCC
Confidence 34555543 33344789999887643222 2222322243 2222221 1223344545554433357999999999
Q ss_pred ceeecCCCcccCCcccchHHHHHHhcC
Q 043544 426 EFFYFPRDHRLGLLGENSLRSLVANFS 452 (619)
Q Consensus 426 EFL~~P~~~g~~~p~~~sL~dlL~~~~ 452 (619)
--+. +. ..+..+++...
T Consensus 101 ~P~i-~~---------~~i~~l~~~~~ 117 (186)
T cd04182 101 QPLV-TA---------ETLRALIDAFR 117 (186)
T ss_pred CCCC-CH---------HHHHHHHHHHH
Confidence 8542 22 25666666543
No 85
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=25.60 E-value=76 Score=29.52 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=37.3
Q ss_pred EEEEEcCCCcc---HHHHHHHHhcC-CccEEEeeCCCcchHHHHHHHHHHHccCCCcEEEEeeC
Q 043544 365 WFIYDNNSDDG---IQKVIEELNLE-NYNVSRHNWPWIKTQEAGFSHCALTARNECKWVGFFDV 424 (619)
Q Consensus 365 f~IYDNgStD~---T~eIL~~y~~~-G~~Vt~~~Wp~~~~Q~~A~n~Cl~r~~~~adWVlFlDa 424 (619)
|++|..++..- ..++.+.|.+. |++|....|........+....+.+....+++|+++=.
T Consensus 4 fI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S 67 (150)
T PF08357_consen 4 FISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCS 67 (150)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEec
Confidence 67888877654 55666667777 88877666654221222233344444567899998765
No 86
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=25.32 E-value=2.5e+02 Score=28.39 Aligned_cols=54 Identities=11% Similarity=0.063 Sum_probs=39.5
Q ss_pred CCceEEEEEEeec--chHHHHHHHHHHHHhcCccEEEEEEcCCC---ccHHHHHHHHhc
Q 043544 332 GGKFELCVCTMLW--NQASLIREWIMYHAWLGVERWFIYDNNSD---DGIQKVIEELNL 385 (619)
Q Consensus 332 ~kk~~L~VctIvk--NEA~~L~EWIeyH~alGVD~f~IYDNgSt---D~T~eIL~~y~~ 385 (619)
..+..++++.+++ -...++.+.++.-..+|++.|++.|.... +++.++++.+.+
T Consensus 128 G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~ 186 (265)
T cd03174 128 GLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALRE 186 (265)
T ss_pred CCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHH
Confidence 4556666666777 67888999888877889999999997663 356666666543
No 87
>cd01175 IPT_COE IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved in the regulation of the early stages of B-cell differentiation, Drosophila collier is a regulator of the head patterning, and a related protein in Xenopus is involved in primary neurogenesis. All COE family members have a well conserved DNA binding domain that contains an atypical Zn finger motif. The function of the IPT domain is unknown.
Probab=25.08 E-value=2.6e+02 Score=24.87 Aligned_cols=48 Identities=17% Similarity=0.172 Sum_probs=31.9
Q ss_pred EeeccCCCCCCCCCceeEEEeecCcCCCCCceeEEehhhhcccceeecCCCccccCCCCcccceEEEEEE
Q 043544 206 VKGLNLRPHRESDHTLFRCQFGLGHWEKDEGFAFVTEAVAAAQEVVRCLLPRSISKNPNKAKGIRVAVVN 275 (619)
Q Consensus 206 ~kg~n~r~~~~~~~~~~~c~~~~~~~~~~~~~~~~t~~~~~~qev~rC~~p~~~~~~~~~~~~~~v~~~~ 275 (619)
+-|=|.+++ +.|+||.. .+-+. ..++-.++|.+||+-.. -.+.|++..
T Consensus 21 I~GenF~~g-------l~V~FG~~--------~~w~e--~isp~~i~~~tPP~~~p-----G~V~Vtl~~ 68 (85)
T cd01175 21 IIGDNFFDG-------LQVVFGTM--------LVWSE--LITPHAIRVQTPPRHIP-----GVVEVTLSY 68 (85)
T ss_pred EECCCCCCC-------cEEEECCE--------eEEEE--EeccceEEEecCCCCCC-----ceEEEEEEE
Confidence 457777766 78999853 12232 33477899999997443 346677776
No 88
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=23.23 E-value=5.4e+02 Score=24.64 Aligned_cols=93 Identities=10% Similarity=-0.068 Sum_probs=48.7
Q ss_pred HHHHHH-HHHHHhcCccEEEEEEcCCCccHHHHHHHH-hcCCccEEEeeCCC-cchHHHHHHHHHHHc-cCCCcEEEEee
Q 043544 348 SLIREW-IMYHAWLGVERWFIYDNNSDDGIQKVIEEL-NLENYNVSRHNWPW-IKTQEAGFSHCALTA-RNECKWVGFFD 423 (619)
Q Consensus 348 ~~L~EW-IeyH~alGVD~f~IYDNgStD~T~eIL~~y-~~~G~~Vt~~~Wp~-~~~Q~~A~n~Cl~r~-~~~adWVlFlD 423 (619)
+.|.++ |+--...++++++|..+...+....+.+.. ...++ +.+..+. ...+..++..++... ...++|+++++
T Consensus 26 ~~ll~~~i~~~~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~G~~~si~~gl~~~~~~~~d~vlv~~ 103 (190)
T TIGR03202 26 TTLGSASLKTALSSRLSKVIVVIGEKYAHLSWLDPYLLADERI--MLVCCRDACEGQAHSLKCGLRKAEAMGADAVVILL 103 (190)
T ss_pred ccHHHHHHHHHHhCCCCcEEEEeCCccchhhhhhHhhhcCCCe--EEEECCChhhhHHHHHHHHHHHhccCCCCeEEEEe
Confidence 445555 433234489999999876543333332222 12243 2222221 223445555555432 23689999999
Q ss_pred CCceeecCCCcccCCcccchHHHHHHhcC
Q 043544 424 VDEFFYFPRDHRLGLLGENSLRSLVANFS 452 (619)
Q Consensus 424 aDEFL~~P~~~g~~~p~~~sL~dlL~~~~ 452 (619)
+|==+. +. ..|..+++...
T Consensus 104 ~D~P~v-~~---------~~i~~L~~~~~ 122 (190)
T TIGR03202 104 ADQPFL-TA---------DVINALLALAK 122 (190)
T ss_pred CCCCCC-CH---------HHHHHHHHHHh
Confidence 996553 22 25666666543
No 89
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=22.78 E-value=4.5e+02 Score=26.06 Aligned_cols=88 Identities=14% Similarity=0.109 Sum_probs=43.5
Q ss_pred HHHHHHHHHH-Hhc-CccEEEEEEcCCCccHHHHHHHHhcCCccEEEeeCCCcchHHHHHHHHHHHccCCCcEEEEeeCC
Q 043544 348 SLIREWIMYH-AWL-GVERWFIYDNNSDDGIQKVIEELNLENYNVSRHNWPWIKTQEAGFSHCALTARNECKWVGFFDVD 425 (619)
Q Consensus 348 ~~L~EWIeyH-~al-GVD~f~IYDNgStD~T~eIL~~y~~~G~~Vt~~~Wp~~~~Q~~A~n~Cl~r~~~~adWVlFlDaD 425 (619)
+-|.+|+.-. ... |+++++|..+ .+.+.+.+.. .|..+....-..... ......++.......++++++++|
T Consensus 26 kpll~~~l~~l~~~~~i~~ivvv~~--~~~i~~~~~~---~~~~~~~~~~~~~~g-t~~~~~~~~~~~~~~d~vlv~~gD 99 (239)
T cd02517 26 KPMIQHVYERAKKAKGLDEVVVATD--DERIADAVES---FGGKVVMTSPDHPSG-TDRIAEVAEKLDADDDIVVNVQGD 99 (239)
T ss_pred cCHHHHHHHHHHhCCCCCEEEEECC--cHHHHHHHHH---cCCEEEEcCcccCch-hHHHHHHHHhcCCCCCEEEEecCC
Confidence 3344544433 345 8999998643 2444444433 354443321111111 112223332222225899999999
Q ss_pred c-eeecCCCcccCCcccchHHHHHHhcC
Q 043544 426 E-FFYFPRDHRLGLLGENSLRSLVANFS 452 (619)
Q Consensus 426 E-FL~~P~~~g~~~p~~~sL~dlL~~~~ 452 (619)
- ++. + ..|..+++.+.
T Consensus 100 ~Pli~-~----------~~l~~l~~~~~ 116 (239)
T cd02517 100 EPLIP-P----------EMIDQVVAALK 116 (239)
T ss_pred CCCCC-H----------HHHHHHHHHHH
Confidence 8 552 2 26677776543
No 90
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=22.08 E-value=3.8e+02 Score=26.21 Aligned_cols=76 Identities=12% Similarity=0.083 Sum_probs=40.4
Q ss_pred HHHHHHHHHhcCccEEEEEEcCCCccHHHHHHHHhcCCccEEEeeCC-CcchHHHHHHHHHHHccCCCcEEEEeeCCcee
Q 043544 350 IREWIMYHAWLGVERWFIYDNNSDDGIQKVIEELNLENYNVSRHNWP-WIKTQEAGFSHCALTARNECKWVGFFDVDEFF 428 (619)
Q Consensus 350 L~EWIeyH~alGVD~f~IYDNgStD~T~eIL~~y~~~G~~Vt~~~Wp-~~~~Q~~A~n~Cl~r~~~~adWVlFlDaDEFL 428 (619)
|.-.|+.-...|+++|+|..+...+.+.+.+.. ...|+.+....-+ .......++..++... . .++++++.+|-++
T Consensus 33 i~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~-~~~~~~i~~~~~~~~~~g~~~~l~~~~~~~-~-~~~~lv~~~D~i~ 109 (221)
T cd06422 33 IDHALDRLAAAGIRRIVVNTHHLADQIEAHLGD-SRFGLRITISDEPDELLETGGGIKKALPLL-G-DEPFLVVNGDILW 109 (221)
T ss_pred HHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhc-ccCCceEEEecCCCcccccHHHHHHHHHhc-C-CCCEEEEeCCeee
Confidence 333333334569999999887655555555443 1235444443222 1122233444443332 2 3789999999765
No 91
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=21.97 E-value=5.4e+02 Score=25.94 Aligned_cols=88 Identities=14% Similarity=0.130 Sum_probs=50.5
Q ss_pred EEEeecchHHHHHHHHHHHHhcCccEEEEEEcCCC---------------ccHHHHHHHHhcCCccEEEee---CC--Cc
Q 043544 339 VCTMLWNQASLIREWIMYHAWLGVERWFIYDNNSD---------------DGIQKVIEELNLENYNVSRHN---WP--WI 398 (619)
Q Consensus 339 VctIvkNEA~~L~EWIeyH~alGVD~f~IYDNgSt---------------D~T~eIL~~y~~~G~~Vt~~~---Wp--~~ 398 (619)
+.+++.|-...+.... ..|++.+.|++..|+ +...+.++...+.|+.+.... +. ..
T Consensus 69 ~~~l~~~~~~~i~~a~----~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~ 144 (265)
T cd03174 69 LQALVRNREKGIERAL----EAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTD 144 (265)
T ss_pred EEEEccCchhhHHHHH----hCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCC
Confidence 3345566434444444 348999999998872 445566666677887654332 22 11
Q ss_pred chHHHHHHHHHHHccCCCcEEEEeeCCceeecCCC
Q 043544 399 KTQEAGFSHCALTARNECKWVGFFDVDEFFYFPRD 433 (619)
Q Consensus 399 ~~Q~~A~n~Cl~r~~~~adWVlFlDaDEFL~~P~~ 433 (619)
..+...+-..+. ....+++-+.|....+ .|..
T Consensus 145 ~~~l~~~~~~~~--~~g~~~i~l~Dt~G~~-~P~~ 176 (265)
T cd03174 145 PEYVLEVAKALE--EAGADEISLKDTVGLA-TPEE 176 (265)
T ss_pred HHHHHHHHHHHH--HcCCCEEEechhcCCc-CHHH
Confidence 111121212222 2468999999998887 4654
Done!