Query 043546
Match_columns 110
No_of_seqs 200 out of 1024
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 06:06:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043546.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043546hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1515 Arylacetamide deacetyl 99.8 1.9E-20 4.1E-25 141.9 9.6 96 1-98 235-335 (336)
2 PRK10162 acetyl esterase; Prov 99.8 1.9E-20 4.2E-25 140.3 9.3 96 1-100 221-317 (318)
3 COG0657 Aes Esterase/lipase [L 99.7 1.3E-16 2.9E-21 118.5 9.6 90 2-97 219-309 (312)
4 PF07859 Abhydrolase_3: alpha/ 99.6 1.8E-15 3.9E-20 106.0 3.4 70 2-76 141-211 (211)
5 KOG4388 Hormone-sensitive lipa 99.4 1.9E-12 4.2E-17 103.5 7.5 87 12-102 769-858 (880)
6 PF00326 Peptidase_S9: Prolyl 98.9 1.2E-08 2.5E-13 71.8 7.6 65 30-100 145-211 (213)
7 PF01738 DLH: Dienelactone hyd 98.7 2.4E-08 5.2E-13 70.6 6.0 67 30-98 146-217 (218)
8 COG1506 DAP2 Dipeptidyl aminop 98.6 1.7E-07 3.7E-12 76.2 8.1 66 30-101 552-619 (620)
9 TIGR02821 fghA_ester_D S-formy 98.5 2.5E-07 5.4E-12 68.0 6.3 60 29-97 211-273 (275)
10 PLN02442 S-formylglutathione h 98.2 6E-06 1.3E-10 61.1 7.4 61 30-99 218-281 (283)
11 PRK11460 putative hydrolase; P 98.2 8.6E-06 1.9E-10 58.6 7.2 58 30-98 149-208 (232)
12 PRK10566 esterase; Provisional 98.1 1.8E-05 3.8E-10 56.4 6.8 58 30-98 187-248 (249)
13 COG0412 Dienelactone hydrolase 98.0 3.2E-05 6.9E-10 56.2 8.1 69 30-100 159-235 (236)
14 PF02230 Abhydrolase_2: Phosph 97.9 4.5E-05 9.8E-10 54.0 7.1 58 30-98 156-215 (216)
15 PRK10749 lysophospholipase L2; 97.9 7E-05 1.5E-09 56.2 7.4 70 25-99 256-330 (330)
16 PF08840 BAAT_C: BAAT / Acyl-C 97.8 9.3E-05 2E-09 52.8 7.3 76 24-100 111-212 (213)
17 PLN02298 hydrolase, alpha/beta 97.8 0.00014 2.9E-09 54.3 8.0 70 24-99 247-318 (330)
18 PLN02385 hydrolase; alpha/beta 97.8 0.00012 2.6E-09 55.2 7.7 70 24-99 275-346 (349)
19 PHA02857 monoglyceride lipase; 97.7 0.00017 3.7E-09 52.1 7.2 67 24-98 205-273 (276)
20 KOG3043 Predicted hydrolase re 97.7 0.00028 6E-09 51.3 7.9 74 23-98 159-240 (242)
21 PRK10673 acyl-CoA esterase; Pr 97.6 0.00023 5E-09 50.4 6.2 59 30-97 196-254 (255)
22 PRK10115 protease 2; Provision 97.6 0.00042 9.2E-09 57.3 8.3 76 17-98 595-675 (686)
23 PLN02679 hydrolase, alpha/beta 97.4 0.00031 6.8E-09 53.4 5.6 67 24-98 288-357 (360)
24 PLN02824 hydrolase, alpha/beta 97.3 0.00037 7.9E-09 50.9 4.7 65 24-98 230-294 (294)
25 PLN02652 hydrolase; alpha/beta 97.3 0.00094 2E-08 51.9 7.0 68 24-100 320-389 (395)
26 COG2267 PldB Lysophospholipase 97.3 0.00085 1.8E-08 50.3 6.5 68 31-101 230-297 (298)
27 PRK00175 metX homoserine O-ace 97.3 0.00071 1.5E-08 51.9 6.1 67 24-98 305-374 (379)
28 TIGR03343 biphenyl_bphD 2-hydr 97.3 0.00051 1.1E-08 49.4 4.8 63 24-96 219-281 (282)
29 TIGR01738 bioH putative pimelo 97.2 0.00076 1.7E-08 46.3 4.7 62 24-95 184-245 (245)
30 TIGR03056 bchO_mg_che_rel puta 97.2 0.001 2.2E-08 47.3 5.5 62 25-96 217-278 (278)
31 PRK06489 hypothetical protein; 97.1 0.001 2.3E-08 50.4 5.6 68 23-99 287-358 (360)
32 PRK07581 hypothetical protein; 97.1 0.0017 3.8E-08 48.5 6.7 67 24-100 271-338 (339)
33 PLN02965 Probable pheophorbida 97.1 0.0014 3E-08 47.0 5.9 61 27-97 192-252 (255)
34 TIGR03695 menH_SHCHC 2-succiny 97.1 0.0012 2.5E-08 45.3 5.2 60 25-95 191-250 (251)
35 COG0400 Predicted esterase [Ge 97.1 0.0051 1.1E-07 44.1 8.4 58 29-98 146-205 (207)
36 KOG1455 Lysophospholipase [Lip 97.1 0.0014 3.1E-08 49.5 5.6 67 26-98 244-312 (313)
37 PF10340 DUF2424: Protein of u 97.1 0.00083 1.8E-08 52.1 4.4 76 2-77 266-353 (374)
38 TIGR03611 RutD pyrimidine util 97.0 0.0017 3.7E-08 45.1 5.2 63 24-96 194-256 (257)
39 KOG2112 Lysophospholipase [Lip 96.9 0.0029 6.3E-08 45.4 5.6 57 30-97 145-203 (206)
40 KOG2100 Dipeptidyl aminopeptid 96.8 0.0058 1.3E-07 51.3 7.7 69 28-102 681-751 (755)
41 PRK10349 carboxylesterase BioH 96.8 0.0023 4.9E-08 45.7 4.7 63 23-95 191-253 (256)
42 TIGR01392 homoserO_Ac_trn homo 96.8 0.0041 8.8E-08 47.0 6.0 65 24-96 284-351 (351)
43 PRK00870 haloalkane dehalogena 96.8 0.0022 4.7E-08 47.1 4.3 66 24-98 235-301 (302)
44 TIGR02240 PHA_depoly_arom poly 96.7 0.0049 1.1E-07 44.6 5.8 64 24-98 203-266 (276)
45 PRK06765 homoserine O-acetyltr 96.7 0.0048 1E-07 48.0 5.9 66 24-97 319-387 (389)
46 PRK03592 haloalkane dehalogena 96.7 0.0036 7.7E-08 45.7 4.9 63 25-98 225-289 (295)
47 TIGR02427 protocat_pcaD 3-oxoa 96.6 0.0052 1.1E-07 42.2 5.3 61 25-95 190-250 (251)
48 PRK11126 2-succinyl-6-hydroxy- 96.5 0.0061 1.3E-07 42.8 4.8 59 23-97 183-241 (242)
49 TIGR01607 PST-A Plasmodium sub 96.5 0.0071 1.5E-07 45.7 5.4 58 31-96 272-331 (332)
50 TIGR01250 pro_imino_pep_2 prol 96.4 0.0068 1.5E-07 42.6 5.0 61 25-96 228-288 (288)
51 PRK03204 haloalkane dehalogena 96.3 0.0077 1.7E-07 44.2 4.8 58 30-95 228-285 (286)
52 PRK08775 homoserine O-acetyltr 96.2 0.0083 1.8E-07 45.2 4.7 64 24-98 273-339 (343)
53 PLN02980 2-oxoglutarate decarb 96.2 0.0082 1.8E-07 54.2 5.0 70 23-98 1563-1639(1655)
54 COG1505 Serine proteases of th 96.1 0.048 1E-06 44.8 8.6 68 27-99 578-647 (648)
55 TIGR03100 hydr1_PEP hydrolase, 96.1 0.024 5.3E-07 41.5 6.3 65 24-97 203-274 (274)
56 KOG1454 Predicted hydrolase/ac 96.1 0.019 4.2E-07 43.6 5.9 59 31-98 266-324 (326)
57 PF08386 Abhydrolase_4: TAP-li 96.0 0.13 2.7E-06 32.7 8.6 59 30-97 35-93 (103)
58 TIGR01836 PHA_synth_III_C poly 96.0 0.047 1E-06 41.3 7.7 66 24-97 282-349 (350)
59 PLN02894 hydrolase, alpha/beta 96.0 0.039 8.4E-07 42.9 7.3 65 24-98 321-385 (402)
60 PLN02872 triacylglycerol lipas 95.9 0.033 7.1E-07 43.5 6.7 68 31-103 327-394 (395)
61 PF12697 Abhydrolase_6: Alpha/ 95.9 0.02 4.3E-07 38.5 4.9 47 25-76 173-219 (228)
62 KOG2984 Predicted hydrolase [G 95.9 0.011 2.4E-07 43.0 3.7 64 24-98 212-276 (277)
63 PLN03087 BODYGUARD 1 domain co 95.9 0.024 5.1E-07 45.5 5.8 62 27-97 417-478 (481)
64 PRK05077 frsA fermentation/res 95.8 0.028 6E-07 44.0 6.0 57 31-99 357-413 (414)
65 PRK10439 enterobactin/ferric e 95.8 0.01 2.2E-07 46.5 3.6 44 31-77 351-395 (411)
66 PLN02578 hydrolase 95.8 0.028 6.1E-07 42.6 5.8 62 24-96 292-353 (354)
67 TIGR01249 pro_imino_pep_1 prol 95.6 0.039 8.5E-07 40.7 5.9 56 30-97 249-304 (306)
68 PRK05371 x-prolyl-dipeptidyl a 95.6 0.069 1.5E-06 45.1 7.7 68 24-99 451-520 (767)
69 PF12695 Abhydrolase_5: Alpha/ 95.5 0.034 7.4E-07 35.8 4.7 44 24-73 100-145 (145)
70 PF03583 LIP: Secretory lipase 95.5 0.057 1.2E-06 40.3 6.4 59 30-98 220-281 (290)
71 PRK07868 acyl-CoA synthetase; 95.5 0.05 1.1E-06 46.8 6.7 69 23-98 292-361 (994)
72 PLN03084 alpha/beta hydrolase 95.5 0.029 6.3E-07 43.5 4.9 57 31-97 327-383 (383)
73 PRK14875 acetoin dehydrogenase 95.3 0.031 6.8E-07 41.8 4.5 60 25-97 311-370 (371)
74 PRK13604 luxD acyl transferase 95.1 0.087 1.9E-06 40.0 6.3 55 31-92 204-260 (307)
75 PRK10985 putative hydrolase; P 94.9 0.068 1.5E-06 40.0 5.4 68 24-97 251-319 (324)
76 PLN02511 hydrolase 94.9 0.041 8.8E-07 42.5 4.1 72 23-98 293-365 (388)
77 PRK11071 esterase YqiA; Provis 94.8 0.074 1.6E-06 37.1 4.9 52 31-96 138-189 (190)
78 PF06821 Ser_hydrolase: Serine 93.4 0.21 4.6E-06 34.5 4.9 53 31-89 116-170 (171)
79 PF00561 Abhydrolase_1: alpha/ 93.3 0.22 4.8E-06 33.9 5.0 43 31-77 177-219 (230)
80 COG1647 Esterase/lipase [Gener 93.3 0.3 6.6E-06 35.8 5.7 59 30-96 182-242 (243)
81 KOG4178 Soluble epoxide hydrol 92.8 0.36 7.9E-06 36.9 5.7 62 30-98 259-320 (322)
82 PF05705 DUF829: Eukaryotic pr 92.1 0.4 8.7E-06 34.3 5.1 45 30-76 179-225 (240)
83 COG1073 Hydrolases of the alph 91.2 1.3 2.9E-05 31.2 7.0 64 30-99 233-298 (299)
84 COG0627 Predicted esterase [Ge 91.1 0.29 6.2E-06 37.3 3.6 61 30-99 248-312 (316)
85 COG3571 Predicted hydrolase of 90.9 1.3 2.7E-05 31.4 6.3 68 23-98 137-211 (213)
86 PF05728 UPF0227: Uncharacteri 90.6 0.71 1.5E-05 32.5 5.0 51 31-95 136-186 (187)
87 PRK05855 short chain dehydroge 89.6 0.64 1.4E-05 36.7 4.5 59 30-98 234-292 (582)
88 COG0596 MhpC Predicted hydrola 89.4 1.4 3E-05 29.4 5.5 45 30-78 222-267 (282)
89 PF10605 3HBOH: 3HB-oligomer h 88.9 2.1 4.6E-05 35.6 7.0 80 23-106 552-645 (690)
90 PF06500 DUF1100: Alpha/beta h 88.7 0.55 1.2E-05 37.1 3.5 65 30-98 190-255 (411)
91 KOG4627 Kynurenine formamidase 88.4 0.39 8.4E-06 35.1 2.3 58 13-78 192-251 (270)
92 COG2382 Fes Enterochelin ester 87.5 0.73 1.6E-05 35.0 3.3 43 32-77 241-284 (299)
93 COG2945 Predicted hydrolase of 86.2 1.7 3.6E-05 31.3 4.4 55 31-96 151-205 (210)
94 TIGR01838 PHA_synth_I poly(R)- 85.0 1.7 3.7E-05 35.5 4.5 51 23-78 410-460 (532)
95 cd00860 ThrRS_anticodon ThrRS 84.4 2.4 5.3E-05 25.2 4.1 32 32-65 3-34 (91)
96 COG4947 Uncharacterized protei 83.9 0.2 4.3E-06 35.6 -1.1 43 31-75 175-217 (227)
97 KOG2382 Predicted alpha/beta h 83.8 2.4 5.3E-05 32.4 4.6 60 30-98 254-313 (315)
98 PLN02211 methyl indole-3-aceta 83.6 5 0.00011 29.3 6.2 38 31-75 213-252 (273)
99 COG3545 Predicted esterase of 83.5 6.5 0.00014 27.8 6.3 57 27-90 116-174 (181)
100 PF07519 Tannase: Tannase and 81.2 5.4 0.00012 32.0 5.9 65 30-98 354-427 (474)
101 PF08538 DUF1749: Protein of u 80.9 0.86 1.9E-05 34.6 1.3 66 26-96 230-303 (303)
102 KOG4667 Predicted esterase [Li 80.5 2.2 4.7E-05 31.5 3.2 43 30-78 200-244 (269)
103 KOG1552 Predicted alpha/beta h 80.1 3.8 8.2E-05 30.5 4.4 65 24-100 188-254 (258)
104 TIGR01849 PHB_depoly_PhaZ poly 80.1 5.6 0.00012 31.4 5.6 72 23-98 332-406 (406)
105 PF08357 SEFIR: SEFIR domain; 79.5 2.6 5.7E-05 27.8 3.2 38 30-69 1-40 (150)
106 PRK04940 hypothetical protein; 78.8 6.6 0.00014 27.6 5.1 53 31-96 126-178 (180)
107 cd00738 HGTP_anticodon HGTP an 76.9 5.4 0.00012 23.7 3.8 33 30-64 1-36 (94)
108 COG3208 GrsT Predicted thioest 76.3 17 0.00038 26.8 6.9 56 31-96 178-234 (244)
109 KOG2521 Uncharacterized conser 75.2 19 0.00042 27.9 7.2 62 31-98 227-290 (350)
110 KOG3253 Predicted alpha/beta h 74.1 17 0.00038 30.7 6.9 69 24-98 300-378 (784)
111 COG1770 PtrB Protease II [Amin 74.0 5.3 0.00011 33.6 4.0 49 26-74 606-657 (682)
112 cd00859 HisRS_anticodon HisRS 73.8 6.4 0.00014 22.8 3.5 32 34-67 5-36 (91)
113 COG0429 Predicted hydrolase of 73.2 8.2 0.00018 29.9 4.7 64 30-98 275-340 (345)
114 PF10142 PhoPQ_related: PhoPQ- 73.1 9.9 0.00021 29.7 5.2 59 26-98 260-320 (367)
115 PF05576 Peptidase_S37: PS-10 72.5 6.9 0.00015 31.3 4.2 61 30-96 352-412 (448)
116 cd00858 GlyRS_anticodon GlyRS 72.5 7.3 0.00016 25.0 3.8 34 30-65 26-61 (121)
117 PF02129 Peptidase_S15: X-Pro 72.4 6.4 0.00014 28.6 3.9 44 24-69 224-268 (272)
118 PRK05077 frsA fermentation/res 69.6 27 0.00058 27.3 7.0 65 30-98 194-259 (414)
119 PF00756 Esterase: Putative es 68.2 0.76 1.6E-05 32.6 -1.8 45 30-77 184-240 (251)
120 KOG4409 Predicted hydrolase/ac 67.9 21 0.00046 27.9 5.9 58 30-96 304-362 (365)
121 PF12122 DUF3582: Protein of u 67.1 18 0.00038 23.0 4.6 47 46-97 13-60 (101)
122 KOG2281 Dipeptidyl aminopeptid 66.6 22 0.00048 30.3 6.1 61 31-97 804-866 (867)
123 COG2021 MET2 Homoserine acetyl 65.3 17 0.00037 28.5 5.0 64 24-97 302-367 (368)
124 TIGR01840 esterase_phb esteras 62.3 11 0.00024 26.2 3.3 28 29-56 168-197 (212)
125 PF14258 DUF4350: Domain of un 60.5 14 0.0003 21.2 3.0 53 44-98 5-63 (70)
126 PF02273 Acyl_transf_2: Acyl t 58.9 42 0.00092 25.3 5.9 64 31-98 31-98 (294)
127 PF03096 Ndr: Ndr family; Int 58.2 19 0.00042 27.2 4.1 59 30-97 220-278 (283)
128 PF01522 Polysacc_deac_1: Poly 55.9 44 0.00096 20.6 5.1 68 24-100 27-94 (123)
129 TIGR03101 hydr2_PEP hydrolase, 54.8 62 0.0013 23.9 6.3 58 31-93 203-263 (266)
130 PF03959 FSH1: Serine hydrolas 53.9 19 0.0004 25.3 3.3 39 31-75 163-203 (212)
131 KOG2237 Predicted serine prote 52.0 98 0.0021 26.4 7.4 68 29-99 632-706 (712)
132 PF08774 VRR_NUC: VRR-NUC doma 51.9 28 0.0006 21.4 3.5 25 39-65 72-96 (100)
133 TIGR00524 eIF-2B_rel eIF-2B al 51.8 28 0.0006 26.4 4.1 40 31-72 152-191 (303)
134 cd06169 BMC Bacterial Micro-Co 51.5 44 0.00095 18.9 4.1 41 51-93 19-60 (62)
135 COG3243 PhaC Poly(3-hydroxyalk 51.3 96 0.0021 25.0 7.0 72 23-99 325-400 (445)
136 PRK06372 translation initiatio 49.7 34 0.00074 25.4 4.2 37 33-72 111-147 (253)
137 PF11823 DUF3343: Protein of u 49.3 52 0.0011 19.1 5.2 48 43-99 11-63 (73)
138 smart00877 BMC Bacterial micro 49.0 55 0.0012 19.4 4.8 50 46-97 13-63 (75)
139 COG4874 Uncharacterized protei 48.5 26 0.00057 26.3 3.4 29 43-73 56-84 (318)
140 PLN03081 pentatricopeptide (PP 47.9 82 0.0018 26.1 6.6 53 43-97 544-600 (697)
141 PLN00021 chlorophyllase 47.3 93 0.002 23.5 6.3 42 30-73 190-240 (313)
142 TIGR01250 pro_imino_pep_2 prol 47.2 91 0.002 21.4 6.7 41 30-72 26-66 (288)
143 PRK13237 tyrosine phenol-lyase 46.8 27 0.00059 28.1 3.5 30 43-77 322-351 (460)
144 KOG2931 Differentiation-relate 46.5 40 0.00088 25.9 4.2 63 26-98 244-306 (326)
145 PLN03077 Protein ECB2; Provisi 45.6 73 0.0016 27.1 6.1 54 43-98 707-764 (857)
146 COG3150 Predicted esterase [Ge 45.3 28 0.00062 24.7 3.0 54 29-96 133-187 (191)
147 cd01833 XynB_like SGNH_hydrola 45.2 82 0.0018 20.3 5.6 34 32-67 44-85 (157)
148 PLN02385 hydrolase; alpha/beta 45.2 1E+02 0.0022 23.0 6.3 65 30-98 88-153 (349)
149 PF13676 TIR_2: TIR domain; PD 44.0 29 0.00064 20.9 2.7 28 32-63 1-28 (102)
150 PF11339 DUF3141: Protein of u 43.5 1.2E+02 0.0027 25.2 6.7 58 17-77 285-352 (581)
151 PF05448 AXE1: Acetyl xylan es 43.4 64 0.0014 24.5 4.9 57 30-98 263-320 (320)
152 KOG4584 Uncharacterized conser 42.9 25 0.00055 27.1 2.6 47 30-78 270-316 (348)
153 PF03129 HGTP_anticodon: Antic 42.7 31 0.00068 20.5 2.7 24 41-66 13-36 (94)
154 PF00975 Thioesterase: Thioest 42.6 50 0.0011 22.7 4.0 58 31-95 170-229 (229)
155 cd00861 ProRS_anticodon_short 41.7 68 0.0015 18.9 4.1 24 41-66 15-38 (94)
156 PF08323 Glyco_transf_5: Starc 41.4 53 0.0011 23.7 4.1 32 32-65 2-39 (245)
157 PF02273 Acyl_transf_2: Acyl t 40.9 1.2E+02 0.0026 23.0 5.8 65 24-94 191-255 (294)
158 PF01008 IF-2B: Initiation fac 40.7 39 0.00084 24.7 3.3 39 31-72 133-171 (282)
159 smart00460 TGc Transglutaminas 40.4 65 0.0014 17.7 4.4 22 44-67 11-32 (68)
160 cd07649 F-BAR_GAS7 The F-BAR ( 40.4 7.5 0.00016 28.3 -0.5 30 69-98 2-31 (233)
161 TIGR02867 spore_II_P stage II 40.3 1.2E+02 0.0026 21.6 5.6 28 30-57 109-136 (196)
162 PF13362 Toprim_3: Toprim doma 40.2 84 0.0018 18.9 4.4 35 31-67 42-79 (96)
163 TIGR00511 ribulose_e2b2 ribose 40.1 51 0.0011 24.9 3.9 39 31-72 141-179 (301)
164 PF07775 PaRep2b: PaRep2b prot 40.1 1.1E+02 0.0024 25.1 5.9 54 43-98 116-170 (512)
165 PF01343 Peptidase_S49: Peptid 39.9 1.1E+02 0.0024 20.3 5.5 44 48-96 50-96 (154)
166 PF12740 Chlorophyllase2: Chlo 39.9 1.6E+02 0.0034 22.0 6.5 60 31-98 18-77 (259)
167 PF00702 Hydrolase: haloacid d 39.5 39 0.00085 22.8 3.1 33 32-66 118-150 (215)
168 COG0602 NrdG Organic radical a 39.2 49 0.0011 23.6 3.6 31 31-64 73-104 (212)
169 cd07047 BMC_PduB_repeat1 1,2-p 39.2 1.2E+02 0.0026 20.4 5.5 51 46-98 49-106 (134)
170 PF03403 PAF-AH_p_II: Platelet 38.9 1.1E+02 0.0023 23.9 5.6 83 14-100 259-360 (379)
171 TIGR03100 hydr1_PEP hydrolase, 38.6 1.5E+02 0.0032 21.4 6.9 40 30-71 27-69 (274)
172 cd00248 Mth938-like Mth938-lik 38.3 50 0.0011 21.0 3.2 34 30-65 52-85 (109)
173 PLN02955 8-amino-7-oxononanoat 38.1 74 0.0016 25.8 4.7 27 45-73 405-431 (476)
174 TIGR02578 cas_TM1811_Csm1 CRIS 37.9 50 0.0011 27.7 3.9 43 53-98 290-334 (648)
175 COG0124 HisS Histidyl-tRNA syn 37.9 71 0.0015 25.6 4.6 36 30-68 336-371 (429)
176 TIGR00976 /NonD putative hydro 37.7 73 0.0016 25.8 4.7 43 23-69 227-269 (550)
177 PF01738 DLH: Dienelactone hyd 37.7 87 0.0019 21.5 4.6 28 31-58 15-42 (218)
178 PRK08535 translation initiatio 37.5 56 0.0012 24.7 3.8 39 31-72 146-184 (310)
179 COG3449 DNA gyrase inhibitor [ 37.2 1.1E+02 0.0024 21.1 4.9 46 61-106 2-47 (154)
180 KOG2551 Phospholipase/carboxyh 37.0 96 0.0021 22.8 4.7 57 27-98 162-220 (230)
181 TIGR00512 salvage_mtnA S-methy 36.6 64 0.0014 24.9 4.0 40 31-72 180-219 (331)
182 PF00496 SBP_bac_5: Bacterial 36.6 65 0.0014 23.9 4.0 36 32-69 297-332 (374)
183 cd04506 SGNH_hydrolase_YpmR_li 35.9 1.4E+02 0.003 20.2 6.3 12 32-43 72-83 (204)
184 TIGR03221 muco_delta muconolac 35.9 1.1E+02 0.0024 19.1 4.7 40 38-79 18-57 (90)
185 PF00070 Pyr_redox: Pyridine n 35.8 69 0.0015 18.5 3.4 26 44-71 9-34 (80)
186 cd07674 F-BAR_FCHO1 The F-BAR 35.1 9.3 0.0002 28.1 -0.7 27 72-98 5-31 (261)
187 PRK10834 vancomycin high tempe 34.7 47 0.001 24.5 2.9 40 30-71 82-122 (239)
188 PF02426 MIase: Muconolactone 34.7 1.2E+02 0.0025 19.0 4.6 40 39-80 20-59 (91)
189 cd07364 PCA_45_Dioxygenase_B S 34.6 84 0.0018 23.4 4.3 29 44-74 99-127 (277)
190 PF00936 BMC: BMC domain; Int 34.3 1E+02 0.0022 18.2 4.7 51 46-98 14-65 (75)
191 PRK05720 mtnA methylthioribose 34.3 74 0.0016 24.6 4.1 40 31-72 180-219 (344)
192 KOG2624 Triglyceride lipase-ch 34.2 1.9E+02 0.0041 22.9 6.4 71 23-99 327-399 (403)
193 cd07368 PhnC_Bs_like PhnC is a 34.0 85 0.0019 23.3 4.3 30 44-75 96-125 (277)
194 PF05036 SPOR: Sporulation rel 33.9 89 0.0019 17.4 5.6 58 32-92 5-65 (76)
195 PF02698 DUF218: DUF218 domain 33.9 32 0.0007 22.5 1.8 31 30-62 38-70 (155)
196 cd07045 BMC_CcmK_like Carbon d 33.8 1.1E+02 0.0024 18.5 4.2 53 45-98 12-64 (84)
197 KOG3153 Thiamine pyrophosphoki 33.8 1.3E+02 0.0027 22.4 4.9 52 34-105 74-125 (250)
198 cd01846 fatty_acyltransferase_ 33.7 1.7E+02 0.0038 20.8 5.8 26 32-57 103-144 (270)
199 KOG4391 Predicted alpha/beta h 33.7 61 0.0013 24.2 3.3 67 31-105 223-290 (300)
200 PF02441 Flavoprotein: Flavopr 33.6 1E+02 0.0022 19.8 4.2 32 33-68 5-36 (129)
201 PRK10494 hypothetical protein; 33.3 48 0.001 24.4 2.8 37 31-69 122-160 (259)
202 cd01164 FruK_PfkB_like 1-phosp 33.1 83 0.0018 22.7 4.1 39 24-68 46-84 (289)
203 TIGR01839 PHA_synth_II poly(R) 32.8 1.1E+02 0.0025 25.3 5.1 46 23-73 436-481 (560)
204 cd07648 F-BAR_FCHO The F-BAR ( 32.8 11 0.00023 27.6 -0.7 28 71-98 4-31 (261)
205 PRK10907 intramembrane serine 32.5 1.3E+02 0.0029 22.5 5.1 49 43-97 10-58 (276)
206 PF13601 HTH_34: Winged helix 32.5 1.1E+02 0.0025 18.2 4.8 44 50-97 35-78 (80)
207 cd07049 BMC_EutL_repeat1 ethan 32.4 1.4E+02 0.003 19.2 5.8 61 34-98 29-100 (103)
208 TIGR02618 tyr_phenol_ly tyrosi 32.3 53 0.0011 26.5 3.0 29 43-76 315-343 (450)
209 TIGR02826 RNR_activ_nrdG3 anae 32.3 96 0.0021 20.8 4.0 31 31-64 63-93 (147)
210 PRK05629 hypothetical protein; 32.1 59 0.0013 24.3 3.2 41 29-70 5-46 (318)
211 TIGR00418 thrS threonyl-tRNA s 31.9 80 0.0017 25.6 4.1 32 32-66 473-504 (563)
212 PF12745 HGTP_anticodon2: Anti 31.8 72 0.0016 23.8 3.5 32 31-64 7-38 (273)
213 COG1184 GCD2 Translation initi 31.7 56 0.0012 24.9 3.0 37 33-72 147-183 (301)
214 cd08598 PI-PLC1c_yeast Catalyt 31.6 1.4E+02 0.0031 21.8 5.0 47 44-94 30-82 (231)
215 cd07672 F-BAR_PSTPIP2 The F-BA 31.6 12 0.00026 27.4 -0.6 24 74-97 7-30 (240)
216 COG4635 HemG Flavodoxin [Energ 31.5 95 0.0021 21.8 3.8 65 31-98 2-73 (175)
217 KOG1838 Alpha/beta hydrolase [ 31.4 1.2E+02 0.0026 24.2 4.8 69 24-98 318-388 (409)
218 COG3453 Uncharacterized protei 31.3 75 0.0016 21.2 3.1 37 28-66 58-94 (130)
219 TIGR00125 cyt_tran_rel cytidyl 31.0 97 0.0021 17.0 4.3 25 33-57 2-26 (66)
220 COG4822 CbiK Cobalamin biosynt 31.0 84 0.0018 23.3 3.6 34 29-64 198-234 (265)
221 COG4099 Predicted peptidase [G 31.0 49 0.0011 25.7 2.5 48 30-79 316-368 (387)
222 TIGR03828 pfkB 1-phosphofructo 30.9 96 0.0021 22.4 4.1 40 24-69 45-84 (304)
223 COG1249 Lpd Pyruvate/2-oxoglut 30.8 1.3E+02 0.0028 24.1 5.1 35 28-68 171-205 (454)
224 PF05908 DUF867: Protein of un 30.4 64 0.0014 23.0 2.9 33 32-68 105-137 (194)
225 PRK13364 protocatechuate 4,5-d 30.4 43 0.00093 25.0 2.2 29 45-75 100-128 (278)
226 cd07056 BMC_PduK 1,2-propanedi 30.3 1.3E+02 0.0027 18.0 4.8 50 46-98 13-65 (77)
227 PRK15405 ethanolamine utilizat 30.3 1.8E+02 0.004 21.2 5.3 62 34-99 38-110 (217)
228 PF02156 Glyco_hydro_26: Glyco 30.2 1.8E+02 0.004 22.1 5.6 54 43-98 136-193 (311)
229 cd08623 PI-PLCc_beta1 Catalyti 30.2 1.5E+02 0.0033 22.1 5.0 33 44-78 30-70 (258)
230 cd08344 MhqB_like_N N-terminal 30.1 79 0.0017 19.2 3.1 35 43-79 65-99 (112)
231 COG1872 Uncharacterized conser 30.1 44 0.00095 21.4 1.9 26 82-107 46-71 (102)
232 PRK14938 Ser-tRNA(Thr) hydrola 30.0 83 0.0018 24.9 3.7 32 32-66 277-308 (387)
233 TIGR00666 PBP4 D-alanyl-D-alan 29.9 67 0.0014 24.6 3.2 29 30-58 54-84 (345)
234 PRK05090 hypothetical protein; 29.8 51 0.0011 20.8 2.1 26 82-107 42-67 (95)
235 KOG3101 Esterase D [General fu 29.8 1.5E+02 0.0032 22.1 4.7 49 31-80 217-268 (283)
236 cd06595 GH31_xylosidase_XylS-l 29.7 1.3E+02 0.0029 22.3 4.7 28 43-72 24-51 (292)
237 TIGR02152 D_ribokin_bact ribok 29.4 1.3E+02 0.0029 21.6 4.6 40 24-68 41-80 (293)
238 PRK15415 propanediol utilizati 28.9 1.7E+02 0.0036 22.1 5.0 49 48-98 92-147 (266)
239 cd01830 XynE_like SGNH_hydrola 28.7 1.9E+02 0.0042 19.7 7.2 61 32-98 78-154 (204)
240 cd01941 YeiC_kinase_like YeiC- 28.6 1.2E+02 0.0027 21.6 4.3 44 24-72 45-88 (288)
241 PF11144 DUF2920: Protein of u 28.6 1.4E+02 0.0031 23.8 4.8 43 30-74 294-349 (403)
242 COG0434 SgcQ Predicted TIM-bar 28.5 1.9E+02 0.0041 21.6 5.2 60 34-98 24-83 (263)
243 cd07949 PCA_45_Doxase_B_like_1 28.5 46 0.001 24.8 2.1 29 45-75 100-128 (276)
244 PHA02447 hypothetical protein 28.5 36 0.00077 20.3 1.2 21 2-24 22-44 (86)
245 PRK13508 tagatose-6-phosphate 28.4 1E+02 0.0022 22.6 3.9 39 24-69 46-84 (309)
246 PRK05772 translation initiatio 28.4 1.2E+02 0.0025 23.8 4.3 40 31-72 201-240 (363)
247 PF05577 Peptidase_S28: Serine 28.2 89 0.0019 24.3 3.7 44 29-79 376-419 (434)
248 PF12146 Hydrolase_4: Putative 28.1 1.4E+02 0.0029 17.7 5.4 58 33-95 20-78 (79)
249 cd08591 PI-PLCc_beta Catalytic 28.1 1.7E+02 0.0037 21.9 4.9 33 44-78 30-70 (257)
250 PRK05728 DNA polymerase III su 28.1 1E+02 0.0022 20.5 3.5 34 30-65 104-137 (142)
251 cd08626 PI-PLCc_beta4 Catalyti 28.0 1.7E+02 0.0037 21.8 4.9 33 44-78 30-70 (257)
252 TIGR00389 glyS_dimeric glycyl- 28.0 96 0.0021 25.7 3.9 25 40-66 469-493 (551)
253 cd06259 YdcF-like YdcF-like. Y 27.8 64 0.0014 21.0 2.5 37 30-68 35-73 (150)
254 PLN02530 histidine-tRNA ligase 27.8 94 0.002 25.0 3.8 33 32-67 404-436 (487)
255 PRK07259 dihydroorotate dehydr 27.7 2.5E+02 0.0055 20.7 6.2 61 31-98 93-155 (301)
256 PF05853 DUF849: Prokaryotic p 27.6 83 0.0018 23.3 3.3 24 43-68 125-148 (272)
257 PF09752 DUF2048: Uncharacteri 27.5 1.7E+02 0.0038 22.8 5.1 43 31-78 291-333 (348)
258 PF06500 DUF1100: Alpha/beta h 27.4 1.1E+02 0.0025 24.3 4.1 55 31-98 354-409 (411)
259 PF14871 GHL6: Hypothetical gl 27.3 1.3E+02 0.0028 19.8 3.9 30 45-77 1-30 (132)
260 PRK01310 hypothetical protein; 27.3 60 0.0013 20.8 2.2 26 82-107 48-73 (104)
261 COG3347 Uncharacterized conser 27.1 1.8E+02 0.0039 23.2 5.1 45 46-98 170-214 (404)
262 PRK06371 translation initiatio 26.9 1.2E+02 0.0027 23.3 4.2 40 31-72 170-209 (329)
263 PRK08335 translation initiatio 26.8 1.2E+02 0.0027 22.7 4.1 38 32-72 136-173 (275)
264 TIGR03168 1-PFK hexose kinase, 26.6 1.3E+02 0.0028 21.8 4.1 40 24-69 45-84 (303)
265 PF02594 DUF167: Uncharacteris 26.3 41 0.00088 20.2 1.2 23 85-107 39-61 (77)
266 CHL00201 syh histidine-tRNA sy 26.3 1.1E+02 0.0023 24.2 3.8 33 32-67 328-360 (430)
267 COG2819 Predicted hydrolase of 26.2 1E+02 0.0022 23.1 3.5 32 42-75 214-246 (264)
268 COG0529 CysC Adenylylsulfate k 26.1 2.5E+02 0.0054 20.2 5.2 40 46-87 40-79 (197)
269 COG5520 O-Glycosyl hydrolase [ 26.0 1.1E+02 0.0025 24.2 3.8 55 47-107 156-210 (433)
270 cd01822 Lysophospholipase_L1_l 26.0 1.6E+02 0.0035 19.1 4.2 34 32-67 68-109 (177)
271 PRK00647 hypothetical protein; 25.9 66 0.0014 20.3 2.1 27 81-107 36-62 (96)
272 cd08625 PI-PLCc_beta3 Catalyti 25.8 1.7E+02 0.0038 21.7 4.7 33 44-78 30-70 (258)
273 COG4007 Predicted dehydrogenas 25.8 61 0.0013 24.7 2.2 45 49-95 61-107 (340)
274 PRK01530 hypothetical protein; 25.7 64 0.0014 20.7 2.1 26 82-107 49-74 (105)
275 PF04430 DUF498: Protein of un 25.7 75 0.0016 20.0 2.4 33 31-65 54-86 (110)
276 PRK13604 luxD acyl transferase 25.6 3.1E+02 0.0066 20.9 6.8 62 31-98 38-105 (307)
277 KOG2182 Hydrolytic enzymes of 25.6 2.9E+02 0.0063 22.8 6.1 68 30-99 86-163 (514)
278 cd02174 CCT CTP:phosphocholine 25.5 1.8E+02 0.0038 19.6 4.3 28 30-57 2-29 (150)
279 PF00542 Ribosomal_L12: Riboso 25.5 90 0.0019 18.3 2.5 29 31-64 39-67 (68)
280 TIGR03006 pepcterm_polyde poly 25.5 2.8E+02 0.0061 20.5 5.9 68 24-100 37-104 (265)
281 cd05560 Xcc1710_like Xcc1710_l 25.3 1.1E+02 0.0024 19.4 3.2 34 30-65 52-85 (109)
282 PRK05765 precorrin-3B C17-meth 25.3 1.3E+02 0.0028 21.8 3.9 37 31-70 74-111 (246)
283 PF10230 DUF2305: Uncharacteri 25.0 1.1E+02 0.0025 22.3 3.6 40 30-74 222-265 (266)
284 cd01523 RHOD_Lact_B Member of 25.0 1.3E+02 0.0029 17.9 3.4 26 45-74 73-98 (100)
285 PF06850 PHB_depo_C: PHB de-po 25.0 2.7E+02 0.0058 20.1 5.3 65 30-98 135-202 (202)
286 TIGR01647 ATPase-IIIA_H plasma 24.9 1E+02 0.0022 26.3 3.6 32 34-67 435-466 (755)
287 cd07266 HPCD_N_class_II N-term 24.9 1E+02 0.0023 18.6 3.0 18 44-63 72-89 (121)
288 cd08516 PBP2_NikA_DppA_OppA_li 24.8 1.5E+02 0.0032 22.8 4.4 34 33-68 322-355 (457)
289 PRK10466 hybD hydrogenase 2 ma 24.8 72 0.0016 21.6 2.3 26 31-56 2-29 (164)
290 cd01174 ribokinase Ribokinase 24.5 2.2E+02 0.0047 20.3 5.0 37 24-65 46-82 (292)
291 COG0854 PdxJ Pyridoxal phospha 24.3 1.1E+02 0.0024 22.6 3.2 32 36-69 101-134 (243)
292 PRK14799 thrS threonyl-tRNA sy 24.2 1.2E+02 0.0026 25.0 3.9 31 34-66 442-472 (545)
293 TIGR00642 mmCoA_mut_beta methy 24.2 1.4E+02 0.003 25.1 4.3 28 30-57 547-574 (619)
294 PF04244 DPRP: Deoxyribodipyri 24.1 80 0.0017 22.9 2.6 27 43-71 48-74 (224)
295 PRK06036 translation initiatio 24.0 1.5E+02 0.0033 22.9 4.2 41 31-73 181-221 (339)
296 KOG1383 Glutamate decarboxylas 24.0 3.2E+02 0.007 22.4 6.0 65 33-102 386-451 (491)
297 PRK10528 multifunctional acyl- 24.0 2E+02 0.0044 19.5 4.5 32 32-65 75-114 (191)
298 cd07367 CarBb CarBb is the B s 23.8 86 0.0019 23.1 2.7 29 45-75 92-120 (268)
299 cd01477 vWA_F09G8-8_type VWA F 23.7 1.6E+02 0.0035 20.5 4.0 32 30-63 132-165 (193)
300 PF02780 Transketolase_C: Tran 23.7 1.9E+02 0.0041 18.2 4.1 24 42-67 20-43 (124)
301 cd01172 RfaE_like RfaE encodes 23.6 1.4E+02 0.003 21.6 3.8 42 23-69 48-89 (304)
302 cd00952 CHBPH_aldolase Trans-o 23.6 1.6E+02 0.0035 22.0 4.3 34 31-68 79-112 (309)
303 PF01583 APS_kinase: Adenylyls 23.4 1.3E+02 0.0028 20.5 3.4 37 46-84 19-55 (156)
304 PF06792 UPF0261: Uncharacteri 23.4 1.8E+02 0.0039 23.2 4.5 36 31-68 2-37 (403)
305 PF01663 Phosphodiest: Type I 23.4 1.8E+02 0.0038 21.4 4.4 57 40-98 164-222 (365)
306 PF14605 Nup35_RRM_2: Nup53/35 23.3 1.4E+02 0.0031 16.3 5.1 39 31-74 1-39 (53)
307 cd07950 Gallate_Doxase_N The N 23.2 1.1E+02 0.0023 22.8 3.1 29 45-75 100-128 (277)
308 COG4422 Bacteriophage protein 23.2 67 0.0015 23.2 1.9 23 33-57 21-43 (250)
309 COG4978 Transcriptional regula 22.8 1.9E+02 0.0042 19.6 4.1 47 60-106 80-126 (153)
310 PLN02908 threonyl-tRNA synthet 22.4 1.2E+02 0.0026 25.5 3.6 35 30-66 589-623 (686)
311 PF00290 Trp_syntA: Tryptophan 22.4 96 0.0021 23.0 2.7 38 30-71 88-125 (259)
312 cd03413 CbiK_C Anaerobic cobal 22.2 82 0.0018 19.8 2.1 25 30-57 31-55 (103)
313 cd04449 DEP_DEPDC5-like DEP (D 22.2 1E+02 0.0022 18.5 2.4 15 43-57 49-63 (83)
314 PRK15122 magnesium-transportin 22.1 1.2E+02 0.0026 26.5 3.6 33 33-67 542-574 (903)
315 PRK12444 threonyl-tRNA synthet 22.1 1.5E+02 0.0031 24.7 4.0 31 34-66 545-576 (639)
316 PF03740 PdxJ: Pyridoxal phosp 22.1 1.4E+02 0.0031 22.0 3.5 32 37-70 102-135 (239)
317 PRK12757 cell division protein 22.1 3.4E+02 0.0074 20.2 5.8 31 32-65 185-215 (256)
318 PF07881 Fucose_iso_N1: L-fuco 22.1 1.3E+02 0.0029 21.1 3.2 47 31-79 49-109 (171)
319 cd07651 F-BAR_PombeCdc15_like 22.0 24 0.00051 25.4 -0.5 28 71-98 4-31 (236)
320 COG3286 Uncharacterized protei 21.9 3.1E+02 0.0068 19.7 6.2 48 47-97 16-63 (204)
321 cd08517 PBP2_NikA_DppA_OppA_li 21.9 1.7E+02 0.0036 22.7 4.2 27 40-68 345-371 (480)
322 COG1282 PntB NAD/NADP transhyd 21.9 95 0.0021 24.8 2.7 37 30-68 308-348 (463)
323 KOG1014 17 beta-hydroxysteroid 21.5 1.6E+02 0.0034 22.7 3.7 29 31-64 50-78 (312)
324 PF04364 DNA_pol3_chi: DNA pol 21.3 1.7E+02 0.0037 19.2 3.6 32 30-63 105-136 (137)
325 TIGR01421 gluta_reduc_1 glutat 21.3 2.3E+02 0.0049 22.3 4.8 32 30-67 166-197 (450)
326 PRK13111 trpA tryptophan synth 21.2 3.4E+02 0.0073 20.0 5.4 37 31-71 91-127 (258)
327 PF00731 AIRC: AIR carboxylase 21.2 1.8E+02 0.0039 19.8 3.7 34 30-67 1-35 (150)
328 PRK06849 hypothetical protein; 21.2 3.8E+02 0.0082 20.4 7.0 34 30-68 4-37 (389)
329 cd07373 2A5CPDO_A The alpha su 21.1 82 0.0018 23.2 2.2 29 45-75 92-122 (271)
330 PF15652 Tox-SHH: HNH/Endo VII 21.0 1.4E+02 0.003 19.1 2.9 10 30-39 29-38 (100)
331 CHL00200 trpA tryptophan synth 20.9 3.3E+02 0.0071 20.1 5.3 37 31-71 93-129 (263)
332 PRK13626 transcriptional regul 20.9 2E+02 0.0042 23.3 4.5 30 37-68 411-440 (552)
333 cd00862 ProRS_anticodon_zinc P 20.9 2.1E+02 0.0045 20.1 4.1 24 42-67 28-51 (202)
334 PF12681 Glyoxalase_2: Glyoxal 20.9 1.9E+02 0.0041 16.8 4.4 34 44-79 65-100 (108)
335 cd08490 PBP2_NikA_DppA_OppA_li 20.7 2.1E+02 0.0045 22.1 4.5 27 40-68 332-358 (470)
336 PRK10294 6-phosphofructokinase 20.6 1.7E+02 0.0038 21.3 3.9 39 24-68 48-86 (309)
337 PF00590 TP_methylase: Tetrapy 20.6 2.4E+02 0.0051 19.2 4.3 34 32-70 79-115 (210)
338 PF10865 DUF2703: Domain of un 20.6 69 0.0015 21.0 1.5 30 36-67 19-48 (120)
339 PF07223 DUF1421: Protein of u 20.5 77 0.0017 24.8 2.0 23 42-66 334-356 (358)
340 cd06593 GH31_xylosidase_YicI Y 20.4 3.1E+02 0.0068 20.2 5.2 47 43-91 23-75 (308)
341 PRK13372 pcmA protocatechuate 20.4 1.2E+02 0.0026 24.5 3.0 28 46-75 248-275 (444)
342 PRK13366 protocatechuate 4,5-d 20.4 81 0.0018 23.7 2.0 30 44-75 99-128 (284)
343 PRK06703 flavodoxin; Provision 20.4 2.6E+02 0.0056 18.2 5.7 16 42-57 98-113 (151)
344 TIGR03623 probable DNA repair 20.3 4.2E+02 0.0091 22.9 6.5 65 30-98 161-226 (874)
345 PF06525 SoxE: Sulfocyanin (So 20.3 90 0.002 22.4 2.1 24 56-79 92-115 (196)
346 TIGR00259 thylakoid_BtpA membr 20.2 3.6E+02 0.0078 20.0 5.4 62 31-99 17-78 (257)
347 PRK11113 D-alanyl-D-alanine ca 20.2 1.2E+02 0.0026 24.4 3.1 28 31-58 99-128 (477)
348 COG3509 LpqC Poly(3-hydroxybut 20.1 1E+02 0.0022 23.7 2.5 45 53-99 257-308 (312)
349 PLN02323 probable fructokinase 20.1 1.8E+02 0.0038 21.5 3.8 40 24-68 53-92 (330)
350 COG3433 Aryl carrier domain [S 20.1 49 0.0011 20.0 0.7 26 36-65 26-51 (74)
351 PRK05443 polyphosphate kinase; 20.1 1.1E+02 0.0023 26.1 2.9 28 44-73 409-436 (691)
352 cd05009 SIS_GlmS_GlmD_2 SIS (S 20.1 2.5E+02 0.0054 17.8 4.3 56 42-98 24-88 (153)
353 PRK12822 phospho-2-dehydro-3-d 20.0 4.3E+02 0.0094 20.8 5.9 31 30-62 52-83 (356)
No 1
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=99.83 E-value=1.9e-20 Score=141.87 Aligned_cols=96 Identities=33% Similarity=0.512 Sum_probs=87.7
Q ss_pred CcccccCCCC-CCCCCCCCC-C-C--cCcccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeee
Q 043546 1 MWLYMCANND-GPQDPRMKP-P-A--EDLARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFY 75 (110)
Q Consensus 1 ~w~~~lp~~~-~~~~p~~sP-~-~--~~l~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~ 75 (110)
+|+.++|++. +++||++|| . . .+..+..+||+||++||.|+|+|++..|+++|+++| ++|++.+++++.|||+
T Consensus 235 ~w~~~lP~~~~~~~~p~~np~~~~~~~d~~~~~lp~tlv~~ag~D~L~D~~~~Y~~~Lkk~G--v~v~~~~~e~~~H~~~ 312 (336)
T KOG1515|consen 235 WWRLLLPNGKTDLDHPFINPVGNSLAKDLSGLGLPPTLVVVAGYDVLRDEGLAYAEKLKKAG--VEVTLIHYEDGFHGFH 312 (336)
T ss_pred HHHHhCCCCCCCcCCccccccccccccCccccCCCceEEEEeCchhhhhhhHHHHHHHHHcC--CeEEEEEECCCeeEEE
Confidence 4889999999 899999999 4 2 255566789999999999999999999999999999 8999999999999999
Q ss_pred ecCCCcHHHHHHHHHHHHHHHhh
Q 043546 76 LRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 76 ~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
++.+..+.+.++++++.+||++.
T Consensus 313 ~~~~~~~~a~~~~~~i~~fi~~~ 335 (336)
T KOG1515|consen 313 ILDPSSKEAHALMDAIVEFIKSN 335 (336)
T ss_pred ecCCchhhHHHHHHHHHHHHhhc
Confidence 99888899999999999999864
No 2
>PRK10162 acetyl esterase; Provisional
Probab=99.83 E-value=1.9e-20 Score=140.29 Aligned_cols=96 Identities=17% Similarity=0.066 Sum_probs=85.8
Q ss_pred CcccccCCCCCCCCCCCCCCCcCc-ccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCC
Q 043546 1 MWLYMCANNDGPQDPRMKPPAEDL-ARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNP 79 (110)
Q Consensus 1 ~w~~~lp~~~~~~~p~~sP~~~~l-~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~ 79 (110)
+|+.|+++..+..+|+++|...++ ++ +||++|++|+.|+|+|+++.|+++|+++| ++|++++++|+.|||..+..
T Consensus 221 ~~~~y~~~~~~~~~p~~~p~~~~l~~~--lPp~~i~~g~~D~L~de~~~~~~~L~~aG--v~v~~~~~~g~~H~f~~~~~ 296 (318)
T PRK10162 221 YEEAYLSNDADRESPYYCLFNNDLTRD--VPPCFIAGAEFDPLLDDSRLLYQTLAAHQ--QPCEFKLYPGTLHAFLHYSR 296 (318)
T ss_pred HHHHhCCCccccCCcccCcchhhhhcC--CCCeEEEecCCCcCcChHHHHHHHHHHcC--CCEEEEEECCCceehhhccC
Confidence 367788887788899999944567 54 49999999999999999999999999999 99999999999999998888
Q ss_pred CcHHHHHHHHHHHHHHHhhhC
Q 043546 80 TCTNALELTNKFISFIKQNNG 100 (110)
Q Consensus 80 ~~~~a~~~~~~i~~fl~~~~~ 100 (110)
..++++++++++++||+++.+
T Consensus 297 ~~~~a~~~~~~~~~~l~~~~~ 317 (318)
T PRK10162 297 MMDTADDALRDGAQFFTAQLK 317 (318)
T ss_pred chHHHHHHHHHHHHHHHHHhc
Confidence 889999999999999998743
No 3
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=99.69 E-value=1.3e-16 Score=118.53 Aligned_cols=90 Identities=27% Similarity=0.287 Sum_probs=79.0
Q ss_pred cccccCCCCCCCCCCCCC-CCcCcccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCC
Q 043546 2 WLYMCANNDGPQDPRMKP-PAEDLARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPT 80 (110)
Q Consensus 2 w~~~lp~~~~~~~p~~sP-~~~~l~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~ 80 (110)
+..|++...+..+|+++| ..+++.+ +||++|++|+.|+|+|+++.|+++|+++| |+|++.+++|+.|+|..+..
T Consensus 219 ~~~~~~~~~~~~~p~~spl~~~~~~~--lPP~~i~~a~~D~l~~~~~~~a~~L~~ag--v~~~~~~~~g~~H~f~~~~~- 293 (312)
T COG0657 219 ADLYLGAAPDREDPEASPLASDDLSG--LPPTLIQTAEFDPLRDEGEAYAERLRAAG--VPVELRVYPGMIHGFDLLTG- 293 (312)
T ss_pred HHHhCcCccccCCCccCccccccccC--CCCEEEEecCCCcchhHHHHHHHHHHHcC--CeEEEEEeCCcceeccccCc-
Confidence 456777777778899999 5545665 49999999999999999999999999999 99999999999999987765
Q ss_pred cHHHHHHHHHHHHHHHh
Q 043546 81 CTNALELTNKFISFIKQ 97 (110)
Q Consensus 81 ~~~a~~~~~~i~~fl~~ 97 (110)
+++++.+.++.+|+++
T Consensus 294 -~~a~~~~~~~~~~l~~ 309 (312)
T COG0657 294 -PEARSALRQIAAFLRA 309 (312)
T ss_pred -HHHHHHHHHHHHHHHH
Confidence 8899999999999983
No 4
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=99.56 E-value=1.8e-15 Score=105.98 Aligned_cols=70 Identities=31% Similarity=0.425 Sum_probs=60.4
Q ss_pred cccccCCCCCCCCCCCCC-CCcCcccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeee
Q 043546 2 WLYMCANNDGPQDPRMKP-PAEDLARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYL 76 (110)
Q Consensus 2 w~~~lp~~~~~~~p~~sP-~~~~l~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~ 76 (110)
|+.|++ +.++++|++|| ...++++ +||++|++|+.|+|+++++.|+++|++.| ++|++++++|+.|+|.+
T Consensus 141 ~~~~~~-~~~~~~~~~sp~~~~~~~~--~Pp~~i~~g~~D~l~~~~~~~~~~L~~~g--v~v~~~~~~g~~H~f~~ 211 (211)
T PF07859_consen 141 WKLYLP-GSDRDDPLASPLNASDLKG--LPPTLIIHGEDDVLVDDSLRFAEKLKKAG--VDVELHVYPGMPHGFFM 211 (211)
T ss_dssp HHHHHS-TGGTTSTTTSGGGSSCCTT--CHEEEEEEETTSTTHHHHHHHHHHHHHTT---EEEEEEETTEETTGGG
T ss_pred cccccc-ccccccccccccccccccc--CCCeeeeccccccchHHHHHHHHHHHHCC--CCEEEEEECCCeEEeeC
Confidence 567776 66788999999 4435654 59999999999999999999999999999 99999999999999963
No 5
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=99.36 E-value=1.9e-12 Score=103.51 Aligned_cols=87 Identities=23% Similarity=0.222 Sum_probs=77.2
Q ss_pred CCCCCCCC-CCcC--cccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHH
Q 043546 12 PQDPRMKP-PAED--LARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELT 88 (110)
Q Consensus 12 ~~~p~~sP-~~~~--l~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~ 88 (110)
..||+.|| .++| +..| ||+.|+++..||+.||...||++|+.+| .+|++.+.++.+|||..+...++|+++.-
T Consensus 769 pkdPf~SP~~A~de~l~qL--Pp~~i~ac~mDP~LDD~vmfA~kLr~lG--~~v~l~vle~lPHGFLnft~ls~E~~~~~ 844 (880)
T KOG4388|consen 769 PKDPFMSPLLAPDEMLKQL--PPVHIVACAMDPMLDDSVMFARKLRNLG--QPVTLRVLEDLPHGFLNFTALSRETRQAA 844 (880)
T ss_pred CCCcccCcccCChHHHhcC--CCceEEEeccCcchhHHHHHHHHHHhcC--CceeehhhhcCCccceeHHhhCHHHHHHH
Confidence 57999999 6665 5544 9999999999999999999999999999 89999999999999999988999999988
Q ss_pred HHHHHHHHhhhCCc
Q 043546 89 NKFISFIKQNNGSL 102 (110)
Q Consensus 89 ~~i~~fl~~~~~~~ 102 (110)
+.-++-|+...+.+
T Consensus 845 ~~CI~rl~~~L~~~ 858 (880)
T KOG4388|consen 845 ELCIERLRLVLTPP 858 (880)
T ss_pred HHHHHHHHHHhCCC
Confidence 88888888765443
No 6
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=98.86 E-value=1.2e-08 Score=71.82 Aligned_cols=65 Identities=26% Similarity=0.292 Sum_probs=55.6
Q ss_pred CcEEEEecCCCcc--chHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhhhC
Q 043546 30 ERVLIFVAERDYL--CPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQNNG 100 (110)
Q Consensus 30 PP~lv~~g~~D~L--~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~~~ 100 (110)
||+||+.|+.|.. ..++.+++++|+++| +++++.++|+++|+|... ....+..+++.+|++++.+
T Consensus 145 ~P~li~hG~~D~~Vp~~~s~~~~~~L~~~g--~~~~~~~~p~~gH~~~~~----~~~~~~~~~~~~f~~~~l~ 211 (213)
T PF00326_consen 145 PPVLIIHGENDPRVPPSQSLRLYNALRKAG--KPVELLIFPGEGHGFGNP----ENRRDWYERILDFFDKYLK 211 (213)
T ss_dssp SEEEEEEETTBSSSTTHHHHHHHHHHHHTT--SSEEEEEETT-SSSTTSH----HHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEccCCCCccCHHHHHHHHHHHHhcC--CCEEEEEcCcCCCCCCCc----hhHHHHHHHHHHHHHHHcC
Confidence 7999999999965 599999999999999 999999999999976532 3445788999999999865
No 7
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=98.74 E-value=2.4e-08 Score=70.61 Aligned_cols=67 Identities=25% Similarity=0.261 Sum_probs=52.2
Q ss_pred CcEEEEecCCCccchH--HHHHHHHHHhcCCcccEEEEEeCCCceeeeecCC---CcHHHHHHHHHHHHHHHhh
Q 043546 30 ERVLIFVAERDYLCPA--GKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNP---TCTNALELTNKFISFIKQN 98 (110)
Q Consensus 30 PP~lv~~g~~D~L~d~--~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~---~~~~a~~~~~~i~~fl~~~ 98 (110)
.|++++.|+.|++.+. ...+.+.|+++| +++++++|+|+.|||..-.. ....++++++++.+|++++
T Consensus 146 ~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~--~~~~~~~y~ga~HgF~~~~~~~~~~~aa~~a~~~~~~ff~~~ 217 (218)
T PF01738_consen 146 APVLILFGENDPFFPPEEVEALEEALKAAG--VDVEVHVYPGAGHGFANPSRPPYDPAAAEDAWQRTLAFFKRH 217 (218)
T ss_dssp S-EEEEEETT-TTS-HHHHHHHHHHHHCTT--TTEEEEEETT--TTTTSTTSTT--HHHHHHHHHHHHHHHCC-
T ss_pred CCEeecCccCCCCCChHHHHHHHHHHHhcC--CcEEEEECCCCcccccCCCCcccCHHHHHHHHHHHHHHHHhc
Confidence 5999999999988654 468999999999 99999999999999986543 3456888999999999876
No 8
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=98.61 E-value=1.7e-07 Score=76.25 Aligned_cols=66 Identities=24% Similarity=0.360 Sum_probs=58.2
Q ss_pred CcEEEEecCCC--ccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhhhCC
Q 043546 30 ERVLIFVAERD--YLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQNNGS 101 (110)
Q Consensus 30 PP~lv~~g~~D--~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~~~~ 101 (110)
.|+||++|+.| +-.++++.|.++|++.| ++|+++++|++.|+|.. .....+.+.++.+|+.++.+.
T Consensus 552 ~P~LliHG~~D~~v~~~q~~~~~~aL~~~g--~~~~~~~~p~e~H~~~~----~~~~~~~~~~~~~~~~~~~~~ 619 (620)
T COG1506 552 TPLLLIHGEEDDRVPIEQAEQLVDALKRKG--KPVELVVFPDEGHGFSR----PENRVKVLKEILDWFKRHLKQ 619 (620)
T ss_pred CCEEEEeecCCccCChHHHHHHHHHHHHcC--ceEEEEEeCCCCcCCCC----chhHHHHHHHHHHHHHHHhcC
Confidence 59999999999 45779999999999999 99999999999999875 234667899999999998764
No 9
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=98.53 E-value=2.5e-07 Score=67.96 Aligned_cols=60 Identities=12% Similarity=0.206 Sum_probs=49.4
Q ss_pred CCcEEEEecCCCccchH---HHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHh
Q 043546 29 CERVLIFVAERDYLCPA---GKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQ 97 (110)
Q Consensus 29 ~PP~lv~~g~~D~L~d~---~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~ 97 (110)
.||++|.+|+.|++++. ...|+++|+++| +++++.+++|+.|+|.... ..+.+..+|..+
T Consensus 211 ~~plli~~G~~D~~v~~~~~~~~~~~~l~~~g--~~v~~~~~~g~~H~f~~~~-------~~~~~~~~~~~~ 273 (275)
T TIGR02821 211 HSTILIDQGTADQFLDEQLRPDAFEQACRAAG--QALTLRRQAGYDHSYYFIA-------SFIADHLRHHAE 273 (275)
T ss_pred CCCeeEeecCCCcccCccccHHHHHHHHHHcC--CCeEEEEeCCCCccchhHH-------HhHHHHHHHHHh
Confidence 38999999999998775 578999999999 9999999999999998664 345555555544
No 10
>PLN02442 S-formylglutathione hydrolase
Probab=98.22 E-value=6e-06 Score=61.08 Aligned_cols=61 Identities=21% Similarity=0.268 Sum_probs=48.5
Q ss_pred CcEEEEecCCCccchH---HHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhhh
Q 043546 30 ERVLIFVAERDYLCPA---GKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQNN 99 (110)
Q Consensus 30 PP~lv~~g~~D~L~d~---~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~~ 99 (110)
+|+++++|+.|.+.+. +..|.+.|+++| +++++.+++|+.|.|.. -...+++...|..++.
T Consensus 218 ~pvli~~G~~D~~v~~~~~s~~~~~~l~~~g--~~~~~~~~pg~~H~~~~-------~~~~i~~~~~~~~~~~ 281 (283)
T PLN02442 218 ATILIDQGEADKFLKEQLLPENFEEACKEAG--APVTLRLQPGYDHSYFF-------IATFIDDHINHHAQAL 281 (283)
T ss_pred CCEEEEECCCCccccccccHHHHHHHHHHcC--CCeEEEEeCCCCccHHH-------HHHHHHHHHHHHHHHh
Confidence 6999999999988663 789999999999 89999999999998872 2344555555555543
No 11
>PRK11460 putative hydrolase; Provisional
Probab=98.17 E-value=8.6e-06 Score=58.65 Aligned_cols=58 Identities=17% Similarity=0.115 Sum_probs=47.8
Q ss_pred CcEEEEecCCCcc--chHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 30 ERVLIFVAERDYL--CPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 30 PP~lv~~g~~D~L--~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
+|++++.|+.|.+ .+.+.+.+++|+++| +++++++|+|+.|+|. .+.++.+.+||.+.
T Consensus 149 ~pvli~hG~~D~vvp~~~~~~~~~~L~~~g--~~~~~~~~~~~gH~i~---------~~~~~~~~~~l~~~ 208 (232)
T PRK11460 149 TTIHLIHGGEDPVIDVAHAVAAQEALISLG--GDVTLDIVEDLGHAID---------PRLMQFALDRLRYT 208 (232)
T ss_pred CcEEEEecCCCCccCHHHHHHHHHHHHHCC--CCeEEEEECCCCCCCC---------HHHHHHHHHHHHHH
Confidence 6999999999976 458889999999999 9999999999999874 24455666666554
No 12
>PRK10566 esterase; Provisional
Probab=98.05 E-value=1.8e-05 Score=56.44 Aligned_cols=58 Identities=16% Similarity=0.226 Sum_probs=48.9
Q ss_pred CcEEEEecCCCcc--chHHHHHHHHHHhcCCcc--cEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 30 ERVLIFVAERDYL--CPAGKNYYEELKKRGWKG--RVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 30 PP~lv~~g~~D~L--~d~~~~~a~~L~~~G~~v--~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
.|+|+++|+.|.. .+++.+++++|+++| . ++++..|+|.+|++. .+.++++.+||+++
T Consensus 187 ~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g--~~~~~~~~~~~~~~H~~~---------~~~~~~~~~fl~~~ 248 (249)
T PRK10566 187 RPLLLWHGLADDVVPAAESLRLQQALRERG--LDKNLTCLWEPGVRHRIT---------PEALDAGVAFFRQH 248 (249)
T ss_pred CCEEEEEcCCCCcCCHHHHHHHHHHHHhcC--CCcceEEEecCCCCCccC---------HHHHHHHHHHHHhh
Confidence 4999999999965 569999999999999 6 489999999999762 24678999999865
No 13
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.04 E-value=3.2e-05 Score=56.19 Aligned_cols=69 Identities=20% Similarity=0.193 Sum_probs=59.1
Q ss_pred CcEEEEecCCCcc--chHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecC------CCcHHHHHHHHHHHHHHHhhhC
Q 043546 30 ERVLIFVAERDYL--CPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRN------PTCTNALELTNKFISFIKQNNG 100 (110)
Q Consensus 30 PP~lv~~g~~D~L--~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~------~~~~~a~~~~~~i~~fl~~~~~ 100 (110)
.|+|+..|+.|.. .++...+.++|.++| +.+++.+|+|+.|+|..-. -....++++.+++.+|+++..+
T Consensus 159 ~pvl~~~~~~D~~~p~~~~~~~~~~~~~~~--~~~~~~~y~ga~H~F~~~~~~~~~~y~~~aa~~a~~~~~~ff~~~~~ 235 (236)
T COG0412 159 VPVLLHLAGEDPYIPAADVDALAAALEDAG--VKVDLEIYPGAGHGFANDRADYHPGYDAAAAEDAWQRVLAFFKRLLG 235 (236)
T ss_pred CcEEEEecccCCCCChhHHHHHHHHHHhcC--CCeeEEEeCCCccccccCCCcccccCCHHHHHHHHHHHHHHHHHhcc
Confidence 4999999999976 556788999999999 8999999999999999542 2566789999999999998754
No 14
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=97.94 E-value=4.5e-05 Score=53.99 Aligned_cols=58 Identities=22% Similarity=0.242 Sum_probs=46.0
Q ss_pred CcEEEEecCCCcc--chHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 30 ERVLIFVAERDYL--CPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 30 PP~lv~~g~~D~L--~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
.|++++.|..|+. .+.++..++.|++.| .+|+++.|+|++|... .+.++++.+||+++
T Consensus 156 ~pi~~~hG~~D~vvp~~~~~~~~~~L~~~~--~~v~~~~~~g~gH~i~---------~~~~~~~~~~l~~~ 215 (216)
T PF02230_consen 156 TPILIIHGDEDPVVPFEWAEKTAEFLKAAG--ANVEFHEYPGGGHEIS---------PEELRDLREFLEKH 215 (216)
T ss_dssp S-EEEEEETT-SSSTHHHHHHHHHHHHCTT---GEEEEEETT-SSS-----------HHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCcccHHHHHHHHHHHHhcC--CCEEEEEcCCCCCCCC---------HHHHHHHHHHHhhh
Confidence 4999999999976 567999999999999 8999999999999653 36788899999875
No 15
>PRK10749 lysophospholipase L2; Provisional
Probab=97.87 E-value=7e-05 Score=56.20 Aligned_cols=70 Identities=13% Similarity=0.162 Sum_probs=52.0
Q ss_pred ccCCCCcEEEEecCCCccc--hHHHHHHHHHHhcCCcc---cEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhhh
Q 043546 25 ARLGCERVLIFVAERDYLC--PAGKNYYEELKKRGWKG---RVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQNN 99 (110)
Q Consensus 25 ~~l~~PP~lv~~g~~D~L~--d~~~~~a~~L~~~G~~v---~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~~ 99 (110)
..+. -|+||++|+.|... +.+..++++++++| . ++++++++|+.|..... . -...+++++.|.+||++++
T Consensus 256 ~~i~-~P~Lii~G~~D~vv~~~~~~~~~~~l~~~~--~~~~~~~l~~~~gagH~~~~E-~-~~~r~~v~~~i~~fl~~~~ 330 (330)
T PRK10749 256 GDIT-TPLLLLQAEEERVVDNRMHDRFCEARTAAG--HPCEGGKPLVIKGAYHEILFE-K-DAMRSVALNAIVDFFNRHN 330 (330)
T ss_pred cCCC-CCEEEEEeCCCeeeCHHHHHHHHHHHhhcC--CCCCCceEEEeCCCcchhhhC-C-cHHHHHHHHHHHHHHhhcC
Confidence 3444 39999999999764 45677888888876 4 35899999999965432 2 1245778899999998763
No 16
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=97.84 E-value=9.3e-05 Score=52.84 Aligned_cols=76 Identities=18% Similarity=0.305 Sum_probs=45.8
Q ss_pred cccCCCCcEEEEecCCCcc---chHHHHHHHHHHhcCCcccEEEEEeCCCceeeeec-CCC-------------------
Q 043546 24 LARLGCERVLIFVAERDYL---CPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLR-NPT------------------- 80 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D~L---~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~-~~~------------------- 80 (110)
+.++.. |+|+++|+.|-+ ..-+....++|+++|.+.++++..|++++|.+..- .|.
T Consensus 111 vE~i~~-piLli~g~dD~~WpS~~~a~~i~~rL~~~~~~~~~~~l~Y~~aGH~i~~Py~P~~~~~~~~~~~~~~~~GG~~ 189 (213)
T PF08840_consen 111 VEKIKG-PILLISGEDDQIWPSSEMAEQIEERLKAAGFPHNVEHLSYPGAGHLIEPPYFPHCRASYHKFIGTPLAWGGEP 189 (213)
T ss_dssp GGG--S-EEEEEEETT-SSS-HHHHHHHHHHHHHCTT-----EEEEETTB-S---STT-----EEEETTTTEEEE--B-H
T ss_pred HHHcCC-CEEEEEeCCCCccchHHHHHHHHHHHHHhCCCCcceEEEcCCCCceecCCCCCCcccccccccCCcccCCCCh
Confidence 334443 999999999976 44455666899999943458999999999965311 111
Q ss_pred ---cHHHHHHHHHHHHHHHhhhC
Q 043546 81 ---CTNALELTNKFISFIKQNNG 100 (110)
Q Consensus 81 ---~~~a~~~~~~i~~fl~~~~~ 100 (110)
....++...++.+||+++.+
T Consensus 190 ~~~a~A~~dsW~~~l~Fl~~~L~ 212 (213)
T PF08840_consen 190 EAHAKAQEDSWKKILEFLRKHLG 212 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 11456788999999999865
No 17
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=97.80 E-value=0.00014 Score=54.27 Aligned_cols=70 Identities=14% Similarity=0.236 Sum_probs=49.3
Q ss_pred cccCCCCcEEEEecCCCccc--hHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhhh
Q 043546 24 LARLGCERVLIFVAERDYLC--PAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQNN 99 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D~L~--d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~~ 99 (110)
+..+. .|+||++|+.|.+. +.++.+++++... ..++++++|+.|......+. ...+++.+.+.+||.+..
T Consensus 247 l~~i~-~PvLii~G~~D~ivp~~~~~~l~~~i~~~----~~~l~~~~~a~H~~~~e~pd-~~~~~~~~~i~~fl~~~~ 318 (330)
T PLN02298 247 LKDVS-IPFIVLHGSADVVTDPDVSRALYEEAKSE----DKTIKIYDGMMHSLLFGEPD-ENIEIVRRDILSWLNERC 318 (330)
T ss_pred hhhcC-CCEEEEecCCCCCCCHHHHHHHHHHhccC----CceEEEcCCcEeeeecCCCH-HHHHHHHHHHHHHHHHhc
Confidence 34455 49999999999875 4555556655433 37899999999965544331 234667889999999874
No 18
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=97.80 E-value=0.00012 Score=55.22 Aligned_cols=70 Identities=20% Similarity=0.287 Sum_probs=48.1
Q ss_pred cccCCCCcEEEEecCCCccch--HHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhhh
Q 043546 24 LARLGCERVLIFVAERDYLCP--AGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQNN 99 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D~L~d--~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~~ 99 (110)
+..+.+ |+||++|+.|.+.+ .+..+++++... ++++++++|++|......+. ....++++.+.+||+++.
T Consensus 275 l~~i~~-P~Lii~G~~D~vv~~~~~~~l~~~~~~~----~~~l~~i~~~gH~l~~e~p~-~~~~~v~~~i~~wL~~~~ 346 (349)
T PLN02385 275 LEEVSL-PLLILHGEADKVTDPSVSKFLYEKASSS----DKKLKLYEDAYHSILEGEPD-EMIFQVLDDIISWLDSHS 346 (349)
T ss_pred cccCCC-CEEEEEeCCCCccChHHHHHHHHHcCCC----CceEEEeCCCeeecccCCCh-hhHHHHHHHHHHHHHHhc
Confidence 344554 99999999998864 345555554322 37899999999965433221 114558899999999875
No 19
>PHA02857 monoglyceride lipase; Provisional
Probab=97.72 E-value=0.00017 Score=52.09 Aligned_cols=67 Identities=10% Similarity=0.129 Sum_probs=48.1
Q ss_pred cccCCCCcEEEEecCCCccch--HHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 24 LARLGCERVLIFVAERDYLCP--AGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D~L~d--~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
+..+.+ |+||+.|+.|.+.+ .+.++++++ + .++++.+++|++|..... ..+..+++++++.+||..+
T Consensus 205 l~~i~~-Pvliv~G~~D~i~~~~~~~~l~~~~---~--~~~~~~~~~~~gH~~~~e--~~~~~~~~~~~~~~~l~~~ 273 (276)
T PHA02857 205 IPKIKT-PILILQGTNNEISDVSGAYYFMQHA---N--CNREIKIYEGAKHHLHKE--TDEVKKSVMKEIETWIFNR 273 (276)
T ss_pred cccCCC-CEEEEecCCCCcCChHHHHHHHHHc---c--CCceEEEeCCCcccccCC--chhHHHHHHHHHHHHHHHh
Confidence 444554 99999999998763 444444433 3 358999999999966532 2244678999999999886
No 20
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=97.70 E-value=0.00028 Score=51.35 Aligned_cols=74 Identities=26% Similarity=0.245 Sum_probs=53.6
Q ss_pred CcccCCCCcEEEEecCCCcc--chHHHHHHHHHHhcCCcccEEEEEeCCCceeeee--cCCCcHH----HHHHHHHHHHH
Q 043546 23 DLARLGCERVLIFVAERDYL--CPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYL--RNPTCTN----ALELTNKFISF 94 (110)
Q Consensus 23 ~l~~l~~PP~lv~~g~~D~L--~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~--~~~~~~~----a~~~~~~i~~f 94 (110)
+..+.++ |++++.|+.|.+ ..+-.+.-++|++.-- +..++++|+|+.|||.. .....|+ ++++.++++.|
T Consensus 159 D~~~vk~-Pilfl~ae~D~~~p~~~v~~~ee~lk~~~~-~~~~v~~f~g~~HGf~~~r~~~~~Ped~~~~eea~~~~~~W 236 (242)
T KOG3043|consen 159 DIANVKA-PILFLFAELDEDVPPKDVKAWEEKLKENPA-VGSQVKTFSGVGHGFVARRANISSPEDKKAAEEAYQRFISW 236 (242)
T ss_pred HHhcCCC-CEEEEeecccccCCHHHHHHHHHHHhcCcc-cceeEEEcCCccchhhhhccCCCChhHHHHHHHHHHHHHHH
Confidence 4555564 999999999988 6666677777777641 33579999999999985 3345555 45566777888
Q ss_pred HHhh
Q 043546 95 IKQN 98 (110)
Q Consensus 95 l~~~ 98 (110)
+++.
T Consensus 237 f~~y 240 (242)
T KOG3043|consen 237 FKHY 240 (242)
T ss_pred HHHh
Confidence 8765
No 21
>PRK10673 acyl-CoA esterase; Provisional
Probab=97.59 E-value=0.00023 Score=50.38 Aligned_cols=59 Identities=7% Similarity=0.048 Sum_probs=46.4
Q ss_pred CcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHh
Q 043546 30 ERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQ 97 (110)
Q Consensus 30 PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~ 97 (110)
.|+|+++|+.|.+.+ ...++.+++.. ..+++.+++|++|.+... ..++..+.+.+||.+
T Consensus 196 ~P~l~i~G~~D~~~~--~~~~~~~~~~~--~~~~~~~~~~~gH~~~~~-----~p~~~~~~l~~fl~~ 254 (255)
T PRK10673 196 HPALFIRGGNSPYVT--EAYRDDLLAQF--PQARAHVIAGAGHWVHAE-----KPDAVLRAIRRYLND 254 (255)
T ss_pred CCeEEEECCCCCCCC--HHHHHHHHHhC--CCcEEEEeCCCCCeeecc-----CHHHHHHHHHHHHhc
Confidence 399999999999874 46778888876 678999999999955432 335678888899875
No 22
>PRK10115 protease 2; Provisional
Probab=97.57 E-value=0.00042 Score=57.33 Aligned_cols=76 Identities=12% Similarity=0.044 Sum_probs=54.6
Q ss_pred CCCCCcCcccCCCCcEEEEecCCCc--cchHHHHHHHHHHhcCCcccEEEEEe---CCCceeeeecCCCcHHHHHHHHHH
Q 043546 17 MKPPAEDLARLGCERVLIFVAERDY--LCPAGKNYYEELKKRGWKGRVELVEH---LDEKHVFYLRNPTCTNALELTNKF 91 (110)
Q Consensus 17 ~sP~~~~l~~l~~PP~lv~~g~~D~--L~d~~~~~a~~L~~~G~~v~v~~~~~---~g~~H~f~~~~~~~~~a~~~~~~i 91 (110)
.||.. .+.....|++||++|.+|+ -.-++..|+.+|++.| ++++++++ ++.+||.. .......+.....
T Consensus 595 ~SP~~-~v~~~~~P~lLi~~g~~D~RV~~~~~~k~~a~Lr~~~--~~~~~vl~~~~~~~GHg~~---~~r~~~~~~~A~~ 668 (686)
T PRK10115 595 YSPYD-NVTAQAYPHLLVTTGLHDSQVQYWEPAKWVAKLRELK--TDDHLLLLCTDMDSGHGGK---SGRFKSYEGVAME 668 (686)
T ss_pred cCchh-ccCccCCCceeEEecCCCCCcCchHHHHHHHHHHhcC--CCCceEEEEecCCCCCCCC---cCHHHHHHHHHHH
Confidence 57711 1223345778999999995 5788999999999999 89888888 99999832 2223344455666
Q ss_pred HHHHHhh
Q 043546 92 ISFIKQN 98 (110)
Q Consensus 92 ~~fl~~~ 98 (110)
..||...
T Consensus 669 ~aFl~~~ 675 (686)
T PRK10115 669 YAFLIAL 675 (686)
T ss_pred HHHHHHH
Confidence 7777765
No 23
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=97.44 E-value=0.00031 Score=53.45 Aligned_cols=67 Identities=16% Similarity=0.240 Sum_probs=48.7
Q ss_pred cccCCCCcEEEEecCCCccchHH---HHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 24 LARLGCERVLIFVAERDYLCPAG---KNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D~L~d~~---~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
+..+.+ ||||++|+.|.+..-. ..+.++|.+.- .++++++++|++|..+. +..+++.+.+.+||.+.
T Consensus 288 l~~i~~-PtLii~G~~D~~~p~~~~~~~~~~~l~~~i--p~~~l~~i~~aGH~~~~-----E~Pe~~~~~I~~FL~~~ 357 (360)
T PLN02679 288 IPRISL-PILVLWGDQDPFTPLDGPVGKYFSSLPSQL--PNVTLYVLEGVGHCPHD-----DRPDLVHEKLLPWLAQL 357 (360)
T ss_pred hhhcCC-CEEEEEeCCCCCcCchhhHHHHHHhhhccC--CceEEEEcCCCCCCccc-----cCHHHHHHHHHHHHHhc
Confidence 344554 9999999999886543 24566776664 57899999999995332 34567888999999763
No 24
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=97.34 E-value=0.00037 Score=50.92 Aligned_cols=65 Identities=15% Similarity=0.057 Sum_probs=47.6
Q ss_pred cccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 24 LARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
+..+. .||+|+.|+.|.+.. .+.++++++.. ...+++++++++|..+. +..+++.+.+.+||.++
T Consensus 230 l~~i~-~P~lvi~G~~D~~~~--~~~~~~~~~~~--~~~~~~~i~~~gH~~~~-----e~p~~~~~~i~~fl~~~ 294 (294)
T PLN02824 230 LPAVK-CPVLIAWGEKDPWEP--VELGRAYANFD--AVEDFIVLPGVGHCPQD-----EAPELVNPLIESFVARH 294 (294)
T ss_pred HhhcC-CCeEEEEecCCCCCC--hHHHHHHHhcC--CccceEEeCCCCCChhh-----hCHHHHHHHHHHHHhcC
Confidence 44444 499999999998874 34456676665 55789999999995432 34567888899998763
No 25
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=97.32 E-value=0.00094 Score=51.92 Aligned_cols=68 Identities=10% Similarity=0.185 Sum_probs=48.0
Q ss_pred cccCCCCcEEEEecCCCccch--HHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhhhC
Q 043546 24 LARLGCERVLIFVAERDYLCP--AGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQNNG 100 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D~L~d--~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~~~ 100 (110)
+..+.+ |+||++|+.|.+.+ .+..+++++. + ..+++++++|+.|.... . ++.+++++.+.+||.++..
T Consensus 320 L~~I~v-PvLIi~G~~D~vvp~~~a~~l~~~~~--~--~~k~l~~~~ga~H~l~~-e---~~~e~v~~~I~~FL~~~~~ 389 (395)
T PLN02652 320 FKSVTV-PFMVLHGTADRVTDPLASQDLYNEAA--S--RHKDIKLYDGFLHDLLF-E---PEREEVGRDIIDWMEKRLD 389 (395)
T ss_pred cccCCC-CEEEEEeCCCCCCCHHHHHHHHHhcC--C--CCceEEEECCCeEEecc-C---CCHHHHHHHHHHHHHHHhh
Confidence 344554 99999999998874 4444444432 2 34788899999996433 2 2457889999999998754
No 26
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=97.31 E-value=0.00085 Score=50.30 Aligned_cols=68 Identities=16% Similarity=0.179 Sum_probs=52.2
Q ss_pred cEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhhhCC
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQNNGS 101 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~~~~ 101 (110)
|+||+.|+.|...+......+..+++|. .++++.+++|+-|- ..+++.... +++++.+.+|+.++.++
T Consensus 230 PvLll~g~~D~vv~~~~~~~~~~~~~~~-~~~~~~~~~g~~He-~~~E~~~~r-~~~~~~~~~~l~~~~~~ 297 (298)
T COG2267 230 PVLLLQGGDDRVVDNVEGLARFFERAGS-PDKELKVIPGAYHE-LLNEPDRAR-EEVLKDILAWLAEALPS 297 (298)
T ss_pred CEEEEecCCCccccCcHHHHHHHHhcCC-CCceEEecCCcchh-hhcCcchHH-HHHHHHHHHHHHhhccC
Confidence 9999999999988755666777788883 23799999999994 334433322 78899999999987653
No 27
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=97.30 E-value=0.00071 Score=51.89 Aligned_cols=67 Identities=21% Similarity=0.281 Sum_probs=52.3
Q ss_pred cccCCCCcEEEEecCCCcc--chHHHHHHHHHHhcCCcccEEEEEeC-CCceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 24 LARLGCERVLIFVAERDYL--CPAGKNYYEELKKRGWKGRVELVEHL-DEKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D~L--~d~~~~~a~~L~~~G~~v~v~~~~~~-g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
+..+.+ ||||+.|+.|.+ .+.++++++.+..++ +.+++.+++ +++|...+. +..++.+.+.+||++.
T Consensus 305 l~~I~~-PtLvI~G~~D~~~p~~~~~~la~~i~~a~--~~~~l~~i~~~~GH~~~le-----~p~~~~~~L~~FL~~~ 374 (379)
T PRK00175 305 LARIKA-RFLVVSFTSDWLFPPARSREIVDALLAAG--ADVSYAEIDSPYGHDAFLL-----DDPRYGRLVRAFLERA 374 (379)
T ss_pred HhcCCC-CEEEEEECCccccCHHHHHHHHHHHHhcC--CCeEEEEeCCCCCchhHhc-----CHHHHHHHHHHHHHhh
Confidence 445554 999999999976 567778899998888 888998885 999965443 3346788889998875
No 28
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=97.28 E-value=0.00051 Score=49.42 Aligned_cols=63 Identities=16% Similarity=0.122 Sum_probs=43.6
Q ss_pred cccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHH
Q 043546 24 LARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIK 96 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~ 96 (110)
+..+.+ |+++++|+.|.+.. ...++++.+.- ..++++++++++|..... ..+.+.+.+.+||+
T Consensus 219 l~~i~~-Pvlli~G~~D~~v~--~~~~~~~~~~~--~~~~~~~i~~agH~~~~e-----~p~~~~~~i~~fl~ 281 (282)
T TIGR03343 219 LGEIKA-KTLVTWGRDDRFVP--LDHGLKLLWNM--PDAQLHVFSRCGHWAQWE-----HADAFNRLVIDFLR 281 (282)
T ss_pred HhhCCC-CEEEEEccCCCcCC--chhHHHHHHhC--CCCEEEEeCCCCcCCccc-----CHHHHHHHHHHHhh
Confidence 445555 89999999998763 23444444443 457889999999965432 34567788888885
No 29
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=97.18 E-value=0.00076 Score=46.33 Aligned_cols=62 Identities=23% Similarity=0.215 Sum_probs=42.2
Q ss_pred cccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHH
Q 043546 24 LARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFI 95 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl 95 (110)
+..+. .|++|++|+.|.+.+.. ..+.+.+.- ..+++.+++|++|..... +.++..+.+.+||
T Consensus 184 l~~i~-~Pvlii~g~~D~~~~~~--~~~~~~~~~--~~~~~~~~~~~gH~~~~e-----~p~~~~~~i~~fi 245 (245)
T TIGR01738 184 LQNIS-VPFLRLYGYLDGLVPAK--VVPYLDKLA--PHSELYIFAKAAHAPFLS-----HAEAFCALLVAFK 245 (245)
T ss_pred HhcCC-CCEEEEeecCCcccCHH--HHHHHHHhC--CCCeEEEeCCCCCCcccc-----CHHHHHHHHHhhC
Confidence 34455 49999999999877432 234444444 468899999999965432 3456677777774
No 30
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=97.18 E-value=0.001 Score=47.33 Aligned_cols=62 Identities=13% Similarity=0.096 Sum_probs=43.5
Q ss_pred ccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHH
Q 043546 25 ARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIK 96 (110)
Q Consensus 25 ~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~ 96 (110)
..+.+ |++|++|+.|.+... ..++.+.+.- ..+++.+++|++|.+... ..++..+.+.+|++
T Consensus 217 ~~i~~-P~lii~g~~D~~vp~--~~~~~~~~~~--~~~~~~~~~~~gH~~~~e-----~p~~~~~~i~~f~~ 278 (278)
T TIGR03056 217 PRITI-PLHLIAGEEDKAVPP--DESKRAATRV--PTATLHVVPGGGHLVHEE-----QADGVVGLILQAAE 278 (278)
T ss_pred ccCCC-CEEEEEeCCCcccCH--HHHHHHHHhc--cCCeEEEECCCCCccccc-----CHHHHHHHHHHHhC
Confidence 33443 999999999988743 2445565553 457889999999965432 34567888888873
No 31
>PRK06489 hypothetical protein; Provisional
Probab=97.15 E-value=0.001 Score=50.41 Aligned_cols=68 Identities=22% Similarity=0.129 Sum_probs=47.5
Q ss_pred CcccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCC----ceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 23 DLARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDE----KHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 23 ~l~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~----~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
.+..+.+ ||||++|+.|.+........+++.+.- ...++++++++ +|... . +.+++.+.+.+||++.
T Consensus 287 ~L~~I~~-PvLvI~G~~D~~~p~~~~~~~~la~~i--p~a~l~~i~~a~~~~GH~~~-e-----~P~~~~~~i~~FL~~~ 357 (360)
T PRK06489 287 DLEKIKA-PVLAINSADDERNPPETGVMEAALKRV--KHGRLVLIPASPETRGHGTT-G-----SAKFWKAYLAEFLAQV 357 (360)
T ss_pred HHHhCCC-CEEEEecCCCcccChhhHHHHHHHHhC--cCCeEEEECCCCCCCCcccc-c-----CHHHHHHHHHHHHHhc
Confidence 3455655 999999999988754443335555554 46789999996 99653 2 3456778888998765
Q ss_pred h
Q 043546 99 N 99 (110)
Q Consensus 99 ~ 99 (110)
.
T Consensus 358 ~ 358 (360)
T PRK06489 358 P 358 (360)
T ss_pred c
Confidence 4
No 32
>PRK07581 hypothetical protein; Validated
Probab=97.14 E-value=0.0017 Score=48.54 Aligned_cols=67 Identities=12% Similarity=0.006 Sum_probs=45.2
Q ss_pred cccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCC-CceeeeecCCCcHHHHHHHHHHHHHHHhhhC
Q 043546 24 LARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLD-EKHVFYLRNPTCTNALELTNKFISFIKQNNG 100 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g-~~H~f~~~~~~~~~a~~~~~~i~~fl~~~~~ 100 (110)
+..+.+ ||||++|+.|.+... ..++.+.+.- ..++++++++ ++|...+. +..++...+.+||++...
T Consensus 271 L~~I~~-PtLvI~G~~D~~~p~--~~~~~l~~~i--p~a~l~~i~~~~GH~~~~~-----~~~~~~~~~~~~~~~~~~ 338 (339)
T PRK07581 271 LGSITA-KTFVMPISTDLYFPP--EDCEAEAALI--PNAELRPIESIWGHLAGFG-----QNPADIAFIDAALKELLA 338 (339)
T ss_pred HhcCCC-CEEEEEeCCCCCCCH--HHHHHHHHhC--CCCeEEEeCCCCCcccccc-----CcHHHHHHHHHHHHHHHh
Confidence 444554 999999999987632 2334444443 3578889999 89965443 334667788888887643
No 33
>PLN02965 Probable pheophorbidase
Probab=97.14 E-value=0.0014 Score=47.02 Aligned_cols=61 Identities=8% Similarity=0.031 Sum_probs=43.5
Q ss_pred CCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHh
Q 043546 27 LGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQ 97 (110)
Q Consensus 27 l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~ 97 (110)
+.. |+++++|+.|.+.+. ..++++.+.- ..+++++++|++|..+... -++..+.+.+|++.
T Consensus 192 i~v-P~lvi~g~~D~~~~~--~~~~~~~~~~--~~a~~~~i~~~GH~~~~e~-----p~~v~~~l~~~~~~ 252 (255)
T PLN02965 192 EKV-PRVYIKTAKDNLFDP--VRQDVMVENW--PPAQTYVLEDSDHSAFFSV-----PTTLFQYLLQAVSS 252 (255)
T ss_pred CCC-CEEEEEcCCCCCCCH--HHHHHHHHhC--CcceEEEecCCCCchhhcC-----HHHHHHHHHHHHHH
Confidence 444 999999999998744 5667777765 5689999999999665432 23455555555543
No 34
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=97.12 E-value=0.0012 Score=45.26 Aligned_cols=60 Identities=22% Similarity=0.240 Sum_probs=43.7
Q ss_pred ccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHH
Q 043546 25 ARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFI 95 (110)
Q Consensus 25 ~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl 95 (110)
..+. .|++++.|+.|.+.. ..++++.+.. ..+++.++++++|...... .+++.+.+.+||
T Consensus 191 ~~~~-~P~l~i~g~~D~~~~---~~~~~~~~~~--~~~~~~~~~~~gH~~~~e~-----~~~~~~~i~~~l 250 (251)
T TIGR03695 191 QALT-IPVLYLCGEKDEKFV---QIAKEMQKLL--PNLTLVIIANAGHNIHLEN-----PEAFAKILLAFL 250 (251)
T ss_pred hCCC-CceEEEeeCcchHHH---HHHHHHHhcC--CCCcEEEEcCCCCCcCccC-----hHHHHHHHHHHh
Confidence 3344 499999999998653 3566777776 6789999999999655432 246677777776
No 35
>COG0400 Predicted esterase [General function prediction only]
Probab=97.10 E-value=0.0051 Score=44.11 Aligned_cols=58 Identities=19% Similarity=0.131 Sum_probs=47.2
Q ss_pred CCcEEEEecCCCcc--chHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 29 CERVLIFVAERDYL--CPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 29 ~PP~lv~~g~~D~L--~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
-.|+|+..|+.|++ ...+.+..+.|++.| .+|+.+.++ ++|... .+.++.+.+|+.+.
T Consensus 146 ~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g--~~v~~~~~~-~GH~i~---------~e~~~~~~~wl~~~ 205 (207)
T COG0400 146 GTPILLSHGTEDPVVPLALAEALAEYLTASG--ADVEVRWHE-GGHEIP---------PEELEAARSWLANT 205 (207)
T ss_pred CCeEEEeccCcCCccCHHHHHHHHHHHHHcC--CCEEEEEec-CCCcCC---------HHHHHHHHHHHHhc
Confidence 36999999999986 678889999999999 999999999 999543 24556666677653
No 36
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=97.08 E-value=0.0014 Score=49.45 Aligned_cols=67 Identities=16% Similarity=0.164 Sum_probs=48.8
Q ss_pred cCCCCcEEEEecCCCccchH--HHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 26 RLGCERVLIFVAERDYLCPA--GKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 26 ~l~~PP~lv~~g~~D~L~d~--~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
.+.+ |.+|++|+.|...|- ++++.++... .+=++..||||.|+-..-+ .-+.....+.+|++||.++
T Consensus 244 ~vtv-PflilHG~dD~VTDp~~Sk~Lye~A~S----~DKTlKlYpGm~H~Ll~gE-~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 244 EVTV-PFLILHGTDDKVTDPKVSKELYEKASS----SDKTLKLYPGMWHSLLSGE-PDENVEIVFGDIISWLDER 312 (313)
T ss_pred cccc-cEEEEecCCCcccCcHHHHHHHHhccC----CCCceeccccHHHHhhcCC-CchhHHHHHHHHHHHHHhc
Confidence 4444 999999999998765 4455554333 3568999999999765422 3356777889999999875
No 37
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=97.07 E-value=0.00083 Score=52.10 Aligned_cols=76 Identities=14% Similarity=0.041 Sum_probs=53.2
Q ss_pred cccccCCC----CCCCCCCCCC-C---CcCcccC-CCCcEEEEecCCCccchHHHHHHHHHHhcC---CcccEEEEEeCC
Q 043546 2 WLYMCANN----DGPQDPRMKP-P---AEDLARL-GCERVLIFVAERDYLCPAGKNYYEELKKRG---WKGRVELVEHLD 69 (110)
Q Consensus 2 w~~~lp~~----~~~~~p~~sP-~---~~~l~~l-~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G---~~v~v~~~~~~g 69 (110)
.+.|+++. .....|++++ . ..+|+++ .---++|++||+|.||||.+++++++.+.+ ++-.++..+.+|
T Consensus 266 ~~~y~~~~~~~~~~~~~~~~n~~~n~d~~~W~~I~~~~~vfVi~Ge~EvfrddI~~~~~~~~~~~~~~~~~~~nv~~~~~ 345 (374)
T PF10340_consen 266 GDAYIGNNDPENDLNSLPFVNIEYNFDAEDWKDILKKYSVFVIYGEDEVFRDDILEWAKKLNDVKPNKFSNSNNVYIDEG 345 (374)
T ss_pred HHhhccccccccccccCCccCcccCCChhHHHHhccCCcEEEEECCccccHHHHHHHHHHHhhcCccccCCcceEEEecC
Confidence 35667662 2234566665 3 2455553 213899999999999999999999999776 112478889999
Q ss_pred Cceeeeec
Q 043546 70 EKHVFYLR 77 (110)
Q Consensus 70 ~~H~f~~~ 77 (110)
..|.-++.
T Consensus 346 G~Hi~P~~ 353 (374)
T PF10340_consen 346 GIHIGPIL 353 (374)
T ss_pred Cccccchh
Confidence 99976543
No 38
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=97.00 E-value=0.0017 Score=45.14 Aligned_cols=63 Identities=21% Similarity=0.240 Sum_probs=42.9
Q ss_pred cccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHH
Q 043546 24 LARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIK 96 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~ 96 (110)
+..+. .|++|+.|+.|.+.+. +.++++.+.- ..++++..++++|.+.. ++.+++.+.+.+||+
T Consensus 194 ~~~i~-~P~l~i~g~~D~~~~~--~~~~~~~~~~--~~~~~~~~~~~gH~~~~-----~~~~~~~~~i~~fl~ 256 (257)
T TIGR03611 194 LDRIQ-HPVLLIANRDDMLVPY--TQSLRLAAAL--PNAQLKLLPYGGHASNV-----TDPETFNRALLDFLK 256 (257)
T ss_pred hcccC-ccEEEEecCcCcccCH--HHHHHHHHhc--CCceEEEECCCCCCccc-----cCHHHHHHHHHHHhc
Confidence 33444 4999999999987632 2234444443 45788899999996543 244567788888875
No 39
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=96.90 E-value=0.0029 Score=45.37 Aligned_cols=57 Identities=23% Similarity=0.190 Sum_probs=48.6
Q ss_pred CcEEEEecCCCcc--chHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHh
Q 043546 30 ERVLIFVAERDYL--CPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQ 97 (110)
Q Consensus 30 PP~lv~~g~~D~L--~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~ 97 (110)
+|.+.+.|+.|++ ..-+...++.|+.+| +.+++..|+|+.|- .. .+.++++..||++
T Consensus 145 ~~i~~~Hg~~d~~vp~~~g~~s~~~l~~~~--~~~~f~~y~g~~h~--~~-------~~e~~~~~~~~~~ 203 (206)
T KOG2112|consen 145 TPILLCHGTADPLVPFRFGEKSAQFLKSLG--VRVTFKPYPGLGHS--TS-------PQELDDLKSWIKT 203 (206)
T ss_pred chhheecccCCceeehHHHHHHHHHHHHcC--CceeeeecCCcccc--cc-------HHHHHHHHHHHHH
Confidence 6899999999965 778999999999999 88999999999993 22 2567888888887
No 40
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.0058 Score=51.30 Aligned_cols=69 Identities=19% Similarity=0.179 Sum_probs=56.3
Q ss_pred CCCcEEEEecCCCcc--chHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhhhCCc
Q 043546 28 GCERVLIFVAERDYL--CPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQNNGSL 102 (110)
Q Consensus 28 ~~PP~lv~~g~~D~L--~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~~~~~ 102 (110)
..|..|+++|+.|-- ..+++.+.+.|+.+| |++.+.+||+..|++..-. .-......+..|++.+.+++
T Consensus 681 ~~~~~LliHGt~DdnVh~q~s~~~~~aL~~~g--v~~~~~vypde~H~is~~~----~~~~~~~~~~~~~~~~~~~~ 751 (755)
T KOG2100|consen 681 KTPKLLLIHGTEDDNVHFQQSAILIKALQNAG--VPFRLLVYPDENHGISYVE----VISHLYEKLDRFLRDCFGSP 751 (755)
T ss_pred ccCCEEEEEcCCcCCcCHHHHHHHHHHHHHCC--CceEEEEeCCCCccccccc----chHHHHHHHHHHHHHHcCcc
Confidence 335679999999955 489999999999999 9999999999999986432 23577889999999765543
No 41
>PRK10349 carboxylesterase BioH; Provisional
Probab=96.82 E-value=0.0023 Score=45.67 Aligned_cols=63 Identities=16% Similarity=0.159 Sum_probs=43.4
Q ss_pred CcccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHH
Q 043546 23 DLARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFI 95 (110)
Q Consensus 23 ~l~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl 95 (110)
.+..+.+ ||+|++|+.|.+.. ...++.+++.- ..+++.++++++|..... ..+.+.+.+.+|-
T Consensus 191 ~l~~i~~-P~lii~G~~D~~~~--~~~~~~~~~~i--~~~~~~~i~~~gH~~~~e-----~p~~f~~~l~~~~ 253 (256)
T PRK10349 191 PLQNVSM-PFLRLYGYLDGLVP--RKVVPMLDKLW--PHSESYIFAKAAHAPFIS-----HPAEFCHLLVALK 253 (256)
T ss_pred HHhhcCC-CeEEEecCCCccCC--HHHHHHHHHhC--CCCeEEEeCCCCCCcccc-----CHHHHHHHHHHHh
Confidence 3445554 99999999998763 34456666664 468999999999955432 3445666666663
No 42
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=96.78 E-value=0.0041 Score=46.98 Aligned_cols=65 Identities=22% Similarity=0.315 Sum_probs=46.3
Q ss_pred cccCCCCcEEEEecCCCcc--chHHHHHHHHHHhcCCcccEEEEEe-CCCceeeeecCCCcHHHHHHHHHHHHHHH
Q 043546 24 LARLGCERVLIFVAERDYL--CPAGKNYYEELKKRGWKGRVELVEH-LDEKHVFYLRNPTCTNALELTNKFISFIK 96 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D~L--~d~~~~~a~~L~~~G~~v~v~~~~~-~g~~H~f~~~~~~~~~a~~~~~~i~~fl~ 96 (110)
++.+.+ |+||++|+.|.+ .+.++.+++.+..+. ..+++++. ++++|..++ ++.+++.+.+.+||+
T Consensus 284 l~~I~~-P~Lvi~G~~D~~~p~~~~~~~a~~i~~~~--~~v~~~~i~~~~GH~~~l-----e~p~~~~~~l~~FL~ 351 (351)
T TIGR01392 284 LSRIKA-PFLVVSITSDWLFPPAESRELAKALPAAG--LRVTYVEIESPYGHDAFL-----VETDQVEELIRGFLR 351 (351)
T ss_pred HhhCCC-CEEEEEeCCccccCHHHHHHHHHHHhhcC--CceEEEEeCCCCCcchhh-----cCHHHHHHHHHHHhC
Confidence 445554 999999999975 446777888887776 55666555 689996544 234677788888874
No 43
>PRK00870 haloalkane dehalogenase; Provisional
Probab=96.77 E-value=0.0022 Score=47.14 Aligned_cols=66 Identities=15% Similarity=0.165 Sum_probs=43.1
Q ss_pred cccCCCCcEEEEecCCCccchHH-HHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 24 LARLGCERVLIFVAERDYLCPAG-KNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D~L~d~~-~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
+..+.+ |++|++|+.|++.... +.+++.+..+. .+++.+++|++|.... +..+++.+.+.+||.++
T Consensus 235 l~~i~~-P~lii~G~~D~~~~~~~~~~~~~~~~~~---~~~~~~i~~~gH~~~~-----e~p~~~~~~l~~fl~~~ 301 (302)
T PRK00870 235 LERWDK-PFLTAFSDSDPITGGGDAILQKRIPGAA---GQPHPTIKGAGHFLQE-----DSGEELAEAVLEFIRAT 301 (302)
T ss_pred hhcCCC-ceEEEecCCCCcccCchHHHHhhccccc---ccceeeecCCCccchh-----hChHHHHHHHHHHHhcC
Confidence 344554 9999999999875422 33444433221 2457899999996433 23357788899998764
No 44
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=96.71 E-value=0.0049 Score=44.61 Aligned_cols=64 Identities=22% Similarity=0.282 Sum_probs=42.5
Q ss_pred cccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 24 LARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
+..+.+ |+||++|+.|.+..- ..+++|.+.- ...+++++++ +|..+. +..+++.+.+.+|+.+.
T Consensus 203 l~~i~~-P~lii~G~~D~~v~~--~~~~~l~~~~--~~~~~~~i~~-gH~~~~-----e~p~~~~~~i~~fl~~~ 266 (276)
T TIGR02240 203 LHKIQQ-PTLVLAGDDDPIIPL--INMRLLAWRI--PNAELHIIDD-GHLFLI-----TRAEAVAPIIMKFLAEE 266 (276)
T ss_pred hhcCCC-CEEEEEeCCCCcCCH--HHHHHHHHhC--CCCEEEEEcC-CCchhh-----ccHHHHHHHHHHHHHHh
Confidence 445554 999999999987642 2234444433 3467777787 895432 34567888889998875
No 45
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=96.69 E-value=0.0048 Score=47.97 Aligned_cols=66 Identities=20% Similarity=0.272 Sum_probs=50.2
Q ss_pred cccCCCCcEEEEecCCCcc--chHHHHHHHHHHhcCCcccEEEEEeCC-CceeeeecCCCcHHHHHHHHHHHHHHHh
Q 043546 24 LARLGCERVLIFVAERDYL--CPAGKNYYEELKKRGWKGRVELVEHLD-EKHVFYLRNPTCTNALELTNKFISFIKQ 97 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D~L--~d~~~~~a~~L~~~G~~v~v~~~~~~g-~~H~f~~~~~~~~~a~~~~~~i~~fl~~ 97 (110)
++.+. .|++|+.|+.|.+ .+.++++++.+...| ..+++++.++ .+|.... ++.+++.+.+.+||++
T Consensus 319 L~~I~-~PtLvI~G~~D~l~p~~~~~~la~~lp~~~--~~a~l~~I~s~~GH~~~l-----e~p~~~~~~I~~FL~~ 387 (389)
T PRK06765 319 LSNIE-ANVLMIPCKQDLLQPPRYNYKMVDILQKQG--KYAEVYEIESINGHMAGV-----FDIHLFEKKIYEFLNR 387 (389)
T ss_pred HhcCC-CCEEEEEeCCCCCCCHHHHHHHHHHhhhcC--CCeEEEEECCCCCcchhh-----cCHHHHHHHHHHHHcc
Confidence 44555 4999999999976 456778888888877 7899999985 8995443 3445677888888865
No 46
>PRK03592 haloalkane dehalogenase; Provisional
Probab=96.68 E-value=0.0036 Score=45.71 Aligned_cols=63 Identities=13% Similarity=0.124 Sum_probs=42.6
Q ss_pred ccCCCCcEEEEecCCCccc-h-HHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 25 ARLGCERVLIFVAERDYLC-P-AGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 25 ~~l~~PP~lv~~g~~D~L~-d-~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
..+.+ |++|++|+.|... . ...++.. +.- ..+++.++++++|.... +..+++.+.+.+|+++.
T Consensus 225 ~~i~~-P~lii~G~~D~~~~~~~~~~~~~---~~~--~~~~~~~i~~~gH~~~~-----e~p~~v~~~i~~fl~~~ 289 (295)
T PRK03592 225 ATSDV-PKLLINAEPGAILTTGAIRDWCR---SWP--NQLEITVFGAGLHFAQE-----DSPEEIGAAIAAWLRRL 289 (295)
T ss_pred ccCCC-CeEEEeccCCcccCcHHHHHHHH---Hhh--hhcceeeccCcchhhhh-----cCHHHHHHHHHHHHHHh
Confidence 34454 9999999999876 3 3333333 322 24688899999995442 23457788889998865
No 47
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=96.64 E-value=0.0052 Score=42.17 Aligned_cols=61 Identities=11% Similarity=0.174 Sum_probs=40.7
Q ss_pred ccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHH
Q 043546 25 ARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFI 95 (110)
Q Consensus 25 ~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl 95 (110)
..+. .|++++.|+.|.+... +..+.+.+.- ...+++++++.+|..... ..+++.+.+.+|+
T Consensus 190 ~~~~-~Pvlii~g~~D~~~~~--~~~~~~~~~~--~~~~~~~~~~~gH~~~~~-----~p~~~~~~i~~fl 250 (251)
T TIGR02427 190 GAIA-VPTLCIAGDQDGSTPP--ELVREIADLV--PGARFAEIRGAGHIPCVE-----QPEAFNAALRDFL 250 (251)
T ss_pred hhcC-CCeEEEEeccCCcCCh--HHHHHHHHhC--CCceEEEECCCCCccccc-----ChHHHHHHHHHHh
Confidence 3444 3999999999988643 2344455543 457889999999965432 2345666777776
No 48
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=96.47 E-value=0.0061 Score=42.81 Aligned_cols=59 Identities=14% Similarity=0.111 Sum_probs=40.0
Q ss_pred CcccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHh
Q 043546 23 DLARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQ 97 (110)
Q Consensus 23 ~l~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~ 97 (110)
.+..+.+ |++|++|+.|.+.. .++++ . .+++.+++|++|.++.. ..++..+.+.+||++
T Consensus 183 ~l~~i~~-P~lii~G~~D~~~~---~~~~~---~----~~~~~~i~~~gH~~~~e-----~p~~~~~~i~~fl~~ 241 (242)
T PRK11126 183 ALQALTF-PFYYLCGERDSKFQ---ALAQQ---L----ALPLHVIPNAGHNAHRE-----NPAAFAASLAQILRL 241 (242)
T ss_pred HhhccCC-CeEEEEeCCcchHH---HHHHH---h----cCeEEEeCCCCCchhhh-----ChHHHHHHHHHHHhh
Confidence 3445555 99999999997542 23332 1 36888999999955432 335677788888864
No 49
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=96.47 E-value=0.0071 Score=45.69 Aligned_cols=58 Identities=24% Similarity=0.438 Sum_probs=41.1
Q ss_pred cEEEEecCCCccch--HHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHH
Q 043546 31 RVLIFVAERDYLCP--AGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIK 96 (110)
Q Consensus 31 P~lv~~g~~D~L~d--~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~ 96 (110)
|+|++.|+.|.+.+ .+..++++ .+. .++++.+++|+.|..... . ..+++++.+.+||+
T Consensus 272 P~Lii~G~~D~vv~~~~~~~~~~~---~~~-~~~~l~~~~g~~H~i~~E-~---~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 272 PILFIHSKGDCVCSYEGTVSFYNK---LSI-SNKELHTLEDMDHVITIE-P---GNEEVLKKIIEWIS 331 (332)
T ss_pred CEEEEEeCCCCccCHHHHHHHHHh---ccC-CCcEEEEECCCCCCCccC-C---CHHHHHHHHHHHhh
Confidence 99999999998764 34444443 331 257899999999965433 2 24678899999985
No 50
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=96.45 E-value=0.0068 Score=42.63 Aligned_cols=61 Identities=20% Similarity=0.255 Sum_probs=40.8
Q ss_pred ccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHH
Q 043546 25 ARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIK 96 (110)
Q Consensus 25 ~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~ 96 (110)
..+++ |++++.|+.|.+.. ...+.+.+.- ..++++++++++|..... .-++..+.+.+||+
T Consensus 228 ~~i~~-P~lii~G~~D~~~~---~~~~~~~~~~--~~~~~~~~~~~gH~~~~e-----~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 228 SEIKV-PTLLTVGEFDTMTP---EAAREMQELI--AGSRLVVFPDGSHMTMIE-----DPEVYFKLLSDFIR 288 (288)
T ss_pred hccCC-CEEEEecCCCccCH---HHHHHHHHhc--cCCeEEEeCCCCCCcccC-----CHHHHHHHHHHHhC
Confidence 34454 99999999998643 2345555543 457889999999955432 23466677777763
No 51
>PRK03204 haloalkane dehalogenase; Provisional
Probab=96.32 E-value=0.0077 Score=44.24 Aligned_cols=58 Identities=17% Similarity=0.125 Sum_probs=39.5
Q ss_pred CcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHH
Q 043546 30 ERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFI 95 (110)
Q Consensus 30 PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl 95 (110)
-||+|++|+.|.+... ...++++++.- ..++++++++++|..+.. +.+++.+.+.+|+
T Consensus 228 ~PtliI~G~~D~~~~~-~~~~~~~~~~i--p~~~~~~i~~aGH~~~~e-----~Pe~~~~~i~~~~ 285 (286)
T PRK03204 228 KPTLLVWGMKDVAFRP-KTILPRLRATF--PDHVLVELPNAKHFIQED-----APDRIAAAIIERF 285 (286)
T ss_pred CCeEEEecCCCcccCc-HHHHHHHHHhc--CCCeEEEcCCCccccccc-----CHHHHHHHHHHhc
Confidence 4999999999976421 22335555553 457899999999965443 3346667777775
No 52
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=96.24 E-value=0.0083 Score=45.17 Aligned_cols=64 Identities=17% Similarity=0.191 Sum_probs=43.7
Q ss_pred cccCCCCcEEEEecCCCccch--HHHHHHHHHHhcCCcccEEEEEeCC-CceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 24 LARLGCERVLIFVAERDYLCP--AGKNYYEELKKRGWKGRVELVEHLD-EKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D~L~d--~~~~~a~~L~~~G~~v~v~~~~~~g-~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
+..+.+ |+||++|+.|.+.. +++++++++ . ..+++.++++ ++|...+. +-+++.+.+.+||.+.
T Consensus 273 l~~I~~-PtLvi~G~~D~~~p~~~~~~~~~~i---~--p~a~l~~i~~~aGH~~~lE-----~Pe~~~~~l~~FL~~~ 339 (343)
T PRK08775 273 PEAIRV-PTVVVAVEGDRLVPLADLVELAEGL---G--PRGSLRVLRSPYGHDAFLK-----ETDRIDAILTTALRST 339 (343)
T ss_pred hhcCCC-CeEEEEeCCCEeeCHHHHHHHHHHc---C--CCCeEEEEeCCccHHHHhc-----CHHHHHHHHHHHHHhc
Confidence 444554 99999999998764 344444433 2 2478899985 99966543 3357778888998764
No 53
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=96.19 E-value=0.0082 Score=54.19 Aligned_cols=70 Identities=26% Similarity=0.355 Sum_probs=48.5
Q ss_pred CcccCCCCcEEEEecCCCccch-HHHHHHHHHHhcCC------cccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHH
Q 043546 23 DLARLGCERVLIFVAERDYLCP-AGKNYYEELKKRGW------KGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFI 95 (110)
Q Consensus 23 ~l~~l~~PP~lv~~g~~D~L~d-~~~~~a~~L~~~G~------~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl 95 (110)
++..+.+ ||||++|+.|.+.. .+.++++.+.++.. ...++++++++++|..+.. ..+++.+.+.+||
T Consensus 1563 ~L~~I~~-PtLlI~Ge~D~~~~~~a~~~~~~i~~a~~~~~~~~~~~a~lvvI~~aGH~~~lE-----~Pe~f~~~I~~FL 1636 (1655)
T PLN02980 1563 DLKQCDT-PLLLVVGEKDVKFKQIAQKMYREIGKSKESGNDKGKEIIEIVEIPNCGHAVHLE-----NPLPVIRALRKFL 1636 (1655)
T ss_pred HHhhCCC-CEEEEEECCCCccHHHHHHHHHHccccccccccccccceEEEEECCCCCchHHH-----CHHHHHHHHHHHH
Confidence 3555554 99999999998653 35566666654310 0127999999999965543 3356888899999
Q ss_pred Hhh
Q 043546 96 KQN 98 (110)
Q Consensus 96 ~~~ 98 (110)
++.
T Consensus 1637 ~~~ 1639 (1655)
T PLN02980 1637 TRL 1639 (1655)
T ss_pred Hhc
Confidence 986
No 54
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=96.12 E-value=0.048 Score=44.78 Aligned_cols=68 Identities=21% Similarity=0.194 Sum_probs=50.0
Q ss_pred CCCCcEEEEecCCC--ccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhhh
Q 043546 27 LGCERVLIFVAERD--YLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQNN 99 (110)
Q Consensus 27 l~~PP~lv~~g~~D--~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~~ 99 (110)
...||+||.++.+| +---.++.|+.+|+++| .+|-+.+--+.+|+-- .+..+.|++ ...+..||.+.+
T Consensus 578 ~kYP~~LITTs~~DDRVHPaHarKfaa~L~e~~--~pv~~~e~t~gGH~g~--~~~~~~A~~-~a~~~afl~r~L 647 (648)
T COG1505 578 QKYPPTLITTSLHDDRVHPAHARKFAAKLQEVG--APVLLREETKGGHGGA--APTAEIARE-LADLLAFLLRTL 647 (648)
T ss_pred ccCCCeEEEcccccccccchHHHHHHHHHHhcC--CceEEEeecCCcccCC--CChHHHHHH-HHHHHHHHHHhh
Confidence 35699999999999 33445999999999999 9999999999999643 223333333 345566776653
No 55
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=96.07 E-value=0.024 Score=41.49 Aligned_cols=65 Identities=15% Similarity=0.175 Sum_probs=42.5
Q ss_pred cccCCCCcEEEEecCCCccchHHH-------HHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHH
Q 043546 24 LARLGCERVLIFVAERDYLCPAGK-------NYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIK 96 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D~L~d~~~-------~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~ 96 (110)
|..+++ |++++.|+.|+..++-. ..++.+... .++++.++++.| +.. .-+...++.+.+.+||+
T Consensus 203 l~~~~~-P~ll~~g~~D~~~~~~~~~~~~~~~~~~~l~~~----~v~~~~~~~~~H-~l~---~e~~~~~v~~~i~~wL~ 273 (274)
T TIGR03100 203 LERFQG-PVLFILSGNDLTAQEFADSVLGEPAWRGALEDP----GIERVEIDGADH-TFS---DRVWREWVAARTTEWLR 273 (274)
T ss_pred HHhcCC-cEEEEEcCcchhHHHHHHHhccChhhHHHhhcC----CeEEEecCCCCc-ccc---cHHHHHHHHHHHHHHHh
Confidence 334454 99999999998754332 222333333 488999999999 321 22334677899999986
Q ss_pred h
Q 043546 97 Q 97 (110)
Q Consensus 97 ~ 97 (110)
+
T Consensus 274 ~ 274 (274)
T TIGR03100 274 R 274 (274)
T ss_pred C
Confidence 3
No 56
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=96.06 E-value=0.019 Score=43.63 Aligned_cols=59 Identities=34% Similarity=0.373 Sum_probs=45.5
Q ss_pred cEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
|++|+.|+.|.+.+.- .+.++++.- -.+++.+.+|++|.-+. +..++....+..|++++
T Consensus 266 pvlii~G~~D~~~p~~--~~~~~~~~~--pn~~~~~I~~~gH~~h~-----e~Pe~~~~~i~~Fi~~~ 324 (326)
T KOG1454|consen 266 PVLIIWGDKDQIVPLE--LAEELKKKL--PNAELVEIPGAGHLPHL-----ERPEEVAALLRSFIARL 324 (326)
T ss_pred ceEEEEcCcCCccCHH--HHHHHHhhC--CCceEEEeCCCCccccc-----CCHHHHHHHHHHHHHHh
Confidence 9999999999886443 666666655 56899999999996543 23457788889998875
No 57
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=95.99 E-value=0.13 Score=32.66 Aligned_cols=59 Identities=12% Similarity=0.079 Sum_probs=39.1
Q ss_pred CcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHh
Q 043546 30 ERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQ 97 (110)
Q Consensus 30 PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~ 97 (110)
+|+||+.+++|+.. ..+.+++|.+.= ....++..+|.+|+.... ..+- +.+.+.+||..
T Consensus 35 ~piL~l~~~~Dp~T--P~~~a~~~~~~l--~~s~lvt~~g~gHg~~~~--~s~C---~~~~v~~yl~~ 93 (103)
T PF08386_consen 35 PPILVLGGTHDPVT--PYEGARAMAARL--PGSRLVTVDGAGHGVYAG--GSPC---VDKAVDDYLLD 93 (103)
T ss_pred CCEEEEecCcCCCC--cHHHHHHHHHHC--CCceEEEEeccCcceecC--CChH---HHHHHHHHHHc
Confidence 79999999999975 444445554442 346889999999998742 2222 23445567664
No 58
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=95.98 E-value=0.047 Score=41.27 Aligned_cols=66 Identities=18% Similarity=0.205 Sum_probs=43.6
Q ss_pred cccCCCCcEEEEecCCCccch--HHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHh
Q 043546 24 LARLGCERVLIFVAERDYLCP--AGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQ 97 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D~L~d--~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~ 97 (110)
++.+.+ |++++.|+.|.+.+ .+..+++.+. + .+.++.++++.-|++. ..+ ....+++..+.+||.+
T Consensus 282 l~~i~~-Pvliv~G~~D~i~~~~~~~~~~~~~~--~--~~~~~~~~~~gH~~~~-~~~--~~~~~v~~~i~~wl~~ 349 (350)
T TIGR01836 282 LKNIKM-PILNIYAERDHLVPPDASKALNDLVS--S--EDYTELSFPGGHIGIY-VSG--KAQKEVPPAIGKWLQA 349 (350)
T ss_pred HHhCCC-CeEEEecCCCCcCCHHHHHHHHHHcC--C--CCeEEEEcCCCCEEEE-ECc--hhHhhhhHHHHHHHHh
Confidence 444554 99999999998754 3444444432 3 3578888886444443 332 2456788999999976
No 59
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=95.98 E-value=0.039 Score=42.88 Aligned_cols=65 Identities=12% Similarity=0.168 Sum_probs=41.3
Q ss_pred cccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 24 LARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
+..+.+ |+++++|+.|.+.... ..+..+..+ ..+++++.+|++|..+... ..++.+.+.+|++..
T Consensus 321 l~~I~v-P~liI~G~~D~i~~~~--~~~~~~~~~--~~~~~~~i~~aGH~~~~E~-----P~~f~~~l~~~~~~~ 385 (402)
T PLN02894 321 ASEWKV-PTTFIYGRHDWMNYEG--AVEARKRMK--VPCEIIRVPQGGHFVFLDN-----PSGFHSAVLYACRKY 385 (402)
T ss_pred cccCCC-CEEEEEeCCCCCCcHH--HHHHHHHcC--CCCcEEEeCCCCCeeeccC-----HHHHHHHHHHHHHHh
Confidence 455554 9999999999865322 222233335 5689999999999544332 245556666666554
No 60
>PLN02872 triacylglycerol lipase
Probab=95.92 E-value=0.033 Score=43.47 Aligned_cols=68 Identities=16% Similarity=0.144 Sum_probs=44.8
Q ss_pred cEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhhhCCcc
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQNNGSLR 103 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~~~~~~ 103 (110)
|++|+.|+.|.+.+-.. ..+.+++.. ..+++..+++..|.-.+.. .+..++..+.+.+||++..++..
T Consensus 327 Pv~i~~G~~D~lv~~~d-v~~l~~~Lp--~~~~l~~l~~~gH~dfi~~--~eape~V~~~Il~fL~~~~~~~~ 394 (395)
T PLN02872 327 PLWMGYGGTDGLADVTD-VEHTLAELP--SKPELLYLENYGHIDFLLS--TSAKEDVYNHMIQFFRSLGKSSS 394 (395)
T ss_pred cEEEEEcCCCCCCCHHH-HHHHHHHCC--CccEEEEcCCCCCHHHHhC--cchHHHHHHHHHHHHHHhhhccC
Confidence 99999999999875322 223333333 3368888999999622221 22345678999999998765543
No 61
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=95.91 E-value=0.02 Score=38.47 Aligned_cols=47 Identities=30% Similarity=0.388 Sum_probs=37.8
Q ss_pred ccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeee
Q 043546 25 ARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYL 76 (110)
Q Consensus 25 ~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~ 76 (110)
..+. .|++++.|+.|.+.+ .+..+++.+.. ..+++.+++|++|....
T Consensus 173 ~~~~-~pvl~i~g~~D~~~~--~~~~~~~~~~~--~~~~~~~~~~~gH~~~~ 219 (228)
T PF12697_consen 173 PRIK-VPVLVIHGEDDPIVP--PESAEELADKL--PNAELVVIPGAGHFLFL 219 (228)
T ss_dssp HGSS-SEEEEEEETTSSSSH--HHHHHHHHHHS--TTEEEEEETTSSSTHHH
T ss_pred cccC-CCeEEeecCCCCCCC--HHHHHHHHHHC--CCCEEEEECCCCCccHH
Confidence 3344 399999999999986 77778888766 67999999999996543
No 62
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=95.90 E-value=0.011 Score=42.98 Aligned_cols=64 Identities=28% Similarity=0.462 Sum_probs=45.3
Q ss_pred cccCCCCcEEEEecCCCccch-HHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 24 LARLGCERVLIFVAERDYLCP-AGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D~L~d-~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
+.+.++ ||||+.|+.|+++. .-.-|-..++. -.++.+.|...|.|++- -++++...+.+|+++.
T Consensus 212 lp~vkc-Ptli~hG~kDp~~~~~hv~fi~~~~~-----~a~~~~~peGkHn~hLr-----ya~eFnklv~dFl~~~ 276 (277)
T KOG2984|consen 212 LPQVKC-PTLIMHGGKDPFCGDPHVCFIPVLKS-----LAKVEIHPEGKHNFHLR-----YAKEFNKLVLDFLKST 276 (277)
T ss_pred cccccC-CeeEeeCCcCCCCCCCCccchhhhcc-----cceEEEccCCCcceeee-----chHHHHHHHHHHHhcc
Confidence 334455 99999999999863 33334343332 35888999999998864 3567888889998764
No 63
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=95.87 E-value=0.024 Score=45.45 Aligned_cols=62 Identities=19% Similarity=0.225 Sum_probs=43.4
Q ss_pred CCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHh
Q 043546 27 LGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQ 97 (110)
Q Consensus 27 l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~ 97 (110)
+.+ |+||++|+.|.+. ..+.++.|.+.- ..+++++.+|++|...+. ++.+++.+.+.+|.++
T Consensus 417 I~v-PtLII~Ge~D~iv--P~~~~~~la~~i--P~a~l~vI~~aGH~~~v~----e~p~~fa~~L~~F~~~ 478 (481)
T PLN03087 417 LKC-DVAIFHGGDDELI--PVECSYAVKAKV--PRARVKVIDDKDHITIVV----GRQKEFARELEEIWRR 478 (481)
T ss_pred CCC-CEEEEEECCCCCC--CHHHHHHHHHhC--CCCEEEEeCCCCCcchhh----cCHHHHHHHHHHHhhc
Confidence 443 9999999999886 333445555554 468999999999964432 2345677778888754
No 64
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=95.84 E-value=0.028 Score=43.99 Aligned_cols=57 Identities=11% Similarity=0.046 Sum_probs=43.2
Q ss_pred cEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhhh
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQNN 99 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~~ 99 (110)
|+|+++|+.|++.. .+.+++|.+.. .+.++.++++..| +. .-.++++.+.+||+++.
T Consensus 357 PvLiI~G~~D~ivP--~~~a~~l~~~~--~~~~l~~i~~~~~-~e-------~~~~~~~~i~~wL~~~l 413 (414)
T PRK05077 357 PMLSGYWKNDPFSP--EEDSRLIASSS--ADGKLLEIPFKPV-YR-------NFDKALQEISDWLEDRL 413 (414)
T ss_pred cEEEEecCCCCCCC--HHHHHHHHHhC--CCCeEEEccCCCc-cC-------CHHHHHHHHHHHHHHHh
Confidence 99999999999873 44455767766 6789999999732 22 34688899999998763
No 65
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=95.82 E-value=0.01 Score=46.49 Aligned_cols=44 Identities=18% Similarity=0.220 Sum_probs=38.6
Q ss_pred cEEEEecCCC-ccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeec
Q 043546 31 RVLIFVAERD-YLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLR 77 (110)
Q Consensus 31 P~lv~~g~~D-~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~ 77 (110)
+++|.+|..| .+.+.++++++.|+++| +++++.+++| +|.+..-
T Consensus 351 r~~i~~G~~E~~~~~~~~~l~~~L~~~G--~~~~~~~~~G-GHd~~~W 395 (411)
T PRK10439 351 RIVLEAGRREPMIMRANQALYAQLHPAG--HSVFWRQVDG-GHDALCW 395 (411)
T ss_pred eEEEeCCCCCchHHHHHHHHHHHHHHCC--CcEEEEECCC-CcCHHHH
Confidence 7889999988 67889999999999999 9999999999 5976543
No 66
>PLN02578 hydrolase
Probab=95.81 E-value=0.028 Score=42.56 Aligned_cols=62 Identities=16% Similarity=0.228 Sum_probs=42.4
Q ss_pred cccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHH
Q 043546 24 LARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIK 96 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~ 96 (110)
+..+.+ |++++.|+.|++.... .++++++.= ...++++. +++|..+. +..+++.+.+.+||.
T Consensus 292 l~~i~~-PvLiI~G~~D~~v~~~--~~~~l~~~~--p~a~l~~i-~~GH~~~~-----e~p~~~~~~I~~fl~ 353 (354)
T PLN02578 292 LSKLSC-PLLLLWGDLDPWVGPA--KAEKIKAFY--PDTTLVNL-QAGHCPHD-----EVPEQVNKALLEWLS 353 (354)
T ss_pred hhcCCC-CEEEEEeCCCCCCCHH--HHHHHHHhC--CCCEEEEe-CCCCCccc-----cCHHHHHHHHHHHHh
Confidence 344554 9999999999876433 456666653 45677777 58996543 344577788888874
No 67
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=95.64 E-value=0.039 Score=40.75 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=38.4
Q ss_pred CcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHh
Q 043546 30 ERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQ 97 (110)
Q Consensus 30 PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~ 97 (110)
.|++|++|+.|.+..- ..++++.+.- ...++.+++|.+|... . + +.++.+.+|+.+
T Consensus 249 ~P~lii~g~~D~~~p~--~~~~~~~~~~--~~~~~~~~~~~gH~~~--~---~---~~~~~i~~~~~~ 304 (306)
T TIGR01249 249 IPTYIVHGRYDLCCPL--QSAWALHKAF--PEAELKVTNNAGHSAF--D---P---NNLAALVHALET 304 (306)
T ss_pred CCeEEEecCCCCCCCH--HHHHHHHHhC--CCCEEEEECCCCCCCC--C---h---HHHHHHHHHHHH
Confidence 3999999999987743 3356666664 4678999999999531 1 2 345666666654
No 68
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=95.57 E-value=0.069 Score=45.06 Aligned_cols=68 Identities=13% Similarity=0.258 Sum_probs=51.5
Q ss_pred cccCCCCcEEEEecCCCccch--HHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhhh
Q 043546 24 LARLGCERVLIFVAERDYLCP--AGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQNN 99 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D~L~d--~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~~ 99 (110)
+.++. .|+|++.|.+|.+.. ++.++.++|++.| ++.++.+.+| .|+.... ....+..+.+.+|+.+.+
T Consensus 451 ~~kIk-vPvLlIhGw~D~~V~~~~s~~ly~aL~~~g--~pkkL~l~~g-~H~~~~~----~~~~d~~e~~~~Wfd~~L 520 (767)
T PRK05371 451 ADKIK-ASVLVVHGLNDWNVKPKQVYQWWDALPENG--VPKKLFLHQG-GHVYPNN----WQSIDFRDTMNAWFTHKL 520 (767)
T ss_pred hhCCC-CCEEEEeeCCCCCCChHHHHHHHHHHHhcC--CCeEEEEeCC-CccCCCc----hhHHHHHHHHHHHHHhcc
Confidence 34455 499999999998854 7889999999999 8999988776 5754321 235577788889988763
No 69
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=95.51 E-value=0.034 Score=35.77 Aligned_cols=44 Identities=30% Similarity=0.302 Sum_probs=29.7
Q ss_pred cccCCCCcEEEEecCCCccc--hHHHHHHHHHHhcCCcccEEEEEeCCCcee
Q 043546 24 LARLGCERVLIFVAERDYLC--PAGKNYYEELKKRGWKGRVELVEHLDEKHV 73 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D~L~--d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~ 73 (110)
+.... .|++++.|+.|.+. ++.+++.++ .. .+.++.+++|+.|+
T Consensus 100 ~~~~~-~pv~~i~g~~D~~~~~~~~~~~~~~---~~--~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 100 LAKIR-IPVLFIHGENDPLVPPEQVRRLYEA---LP--GPKELYIIPGAGHF 145 (145)
T ss_dssp HTTTT-SEEEEEEETT-SSSHHHHHHHHHHH---HC--SSEEEEEETTS-TT
T ss_pred hhccC-CcEEEEEECCCCcCCHHHHHHHHHH---cC--CCcEEEEeCCCcCc
Confidence 44444 49999999999885 344444444 44 46899999999994
No 70
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=95.50 E-value=0.057 Score=40.32 Aligned_cols=59 Identities=17% Similarity=0.186 Sum_probs=45.1
Q ss_pred CcEEEEecCCCcc--chHHHHHHHHHHhcCCcc-cEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 30 ERVLIFVAERDYL--CPAGKNYYEELKKRGWKG-RVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 30 PP~lv~~g~~D~L--~d~~~~~a~~L~~~G~~v-~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
-|++|..|..|.+ ......+++++.++| . +|+++.+++..|.-... .. ......||...
T Consensus 220 ~Pv~i~~g~~D~vvP~~~~~~l~~~~c~~G--~a~V~~~~~~~~~H~~~~~-~~-------~~~a~~Wl~~r 281 (290)
T PF03583_consen 220 VPVLIYQGTADEVVPPADTDALVAKWCAAG--GADVEYVRYPGGGHLGAAF-AS-------APDALAWLDDR 281 (290)
T ss_pred CCEEEEecCCCCCCChHHHHHHHHHHHHcC--CCCEEEEecCCCChhhhhh-cC-------cHHHHHHHHHH
Confidence 4999999999954 668899999999999 5 89999999999954322 22 34455666654
No 71
>PRK07868 acyl-CoA synthetase; Validated
Probab=95.46 E-value=0.05 Score=46.81 Aligned_cols=69 Identities=19% Similarity=0.232 Sum_probs=48.2
Q ss_pred CcccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEE-EEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 23 DLARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVEL-VEHLDEKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 23 ~l~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~-~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
+++++.+ |+|+++|+.|.+.. .+.++.+.+.- ...++ .+.++++|.-.+.... ..++....+.+||+++
T Consensus 292 ~L~~i~~-P~L~i~G~~D~ivp--~~~~~~l~~~i--~~a~~~~~~~~~GH~g~~~g~~--a~~~~wp~i~~wl~~~ 361 (994)
T PRK07868 292 TLADITC-PVLAFVGEVDDIGQ--PASVRGIRRAA--PNAEVYESLIRAGHFGLVVGSR--AAQQTWPTVADWVKWL 361 (994)
T ss_pred chhhCCC-CEEEEEeCCCCCCC--HHHHHHHHHhC--CCCeEEEEeCCCCCEeeeechh--hhhhhChHHHHHHHHh
Confidence 4666665 99999999998863 33344454443 34666 6779999976665432 3356779999999987
No 72
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=95.46 E-value=0.029 Score=43.54 Aligned_cols=57 Identities=16% Similarity=0.090 Sum_probs=39.7
Q ss_pred cEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHh
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQ 97 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~ 97 (110)
|++|++|+.|.+... +.++++.+. .+.++.++++++|..+. +..+++.+.|.+||++
T Consensus 327 PvLiI~G~~D~~v~~--~~~~~~a~~---~~a~l~vIp~aGH~~~~-----E~Pe~v~~~I~~Fl~~ 383 (383)
T PLN03084 327 PITVCWGLRDRWLNY--DGVEDFCKS---SQHKLIELPMAGHHVQE-----DCGEELGGIISGILSK 383 (383)
T ss_pred CEEEEeeCCCCCcCH--HHHHHHHHh---cCCeEEEECCCCCCcch-----hCHHHHHHHHHHHhhC
Confidence 999999999986533 223444443 13688999999995443 3456777888888763
No 73
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=95.31 E-value=0.031 Score=41.77 Aligned_cols=60 Identities=22% Similarity=0.267 Sum_probs=40.6
Q ss_pred ccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHh
Q 043546 25 ARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQ 97 (110)
Q Consensus 25 ~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~ 97 (110)
..+. .|++++.|+.|.+.... .++.+ . ..+++.+++|++|.+... ..+++.+.+.+||++
T Consensus 311 ~~i~-~Pvlii~g~~D~~vp~~--~~~~l---~--~~~~~~~~~~~gH~~~~e-----~p~~~~~~i~~fl~~ 370 (371)
T PRK14875 311 ASLA-IPVLVIWGEQDRIIPAA--HAQGL---P--DGVAVHVLPGAGHMPQME-----AAADVNRLLAEFLGK 370 (371)
T ss_pred hcCC-CCEEEEEECCCCccCHH--HHhhc---c--CCCeEEEeCCCCCChhhh-----CHHHHHHHHHHHhcc
Confidence 3444 49999999999877532 23333 3 347888999999954322 335677777788865
No 74
>PRK13604 luxD acyl transferase; Provisional
Probab=95.11 E-value=0.087 Score=40.01 Aligned_cols=55 Identities=9% Similarity=0.102 Sum_probs=38.3
Q ss_pred cEEEEecCCCcc--chHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHH
Q 043546 31 RVLIFVAERDYL--CPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFI 92 (110)
Q Consensus 31 P~lv~~g~~D~L--~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~ 92 (110)
|+|+++|..|.+ .+.+++|.+.++. .+.++.+++|+.|.|.- ..--.+.+++.+.
T Consensus 204 PvLiIHG~~D~lVp~~~s~~l~e~~~s----~~kkl~~i~Ga~H~l~~---~~~~~~~~~~~~~ 260 (307)
T PRK13604 204 PFIAFTANNDSWVKQSEVIDLLDSIRS----EQCKLYSLIGSSHDLGE---NLVVLRNFYQSVT 260 (307)
T ss_pred CEEEEEcCCCCccCHHHHHHHHHHhcc----CCcEEEEeCCCccccCc---chHHHHHHHHHHH
Confidence 999999999976 5566666666433 36899999999998762 3333444444443
No 75
>PRK10985 putative hydrolase; Provisional
Probab=94.94 E-value=0.068 Score=39.99 Aligned_cols=68 Identities=13% Similarity=0.099 Sum_probs=41.8
Q ss_pred cccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHH-HHHHHHHHh
Q 043546 24 LARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELT-NKFISFIKQ 97 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~-~~i~~fl~~ 97 (110)
++.+.. |+++++|+.|++... +..+.+++.- ..+++.+.++++|.-++.... +....++ +.+++|+..
T Consensus 251 l~~i~~-P~lii~g~~D~~~~~--~~~~~~~~~~--~~~~~~~~~~~GH~~~~~g~~-~~~~~w~~~~~~~~~~~ 319 (324)
T PRK10985 251 LNQIRK-PTLIIHAKDDPFMTH--EVIPKPESLP--PNVEYQLTEHGGHVGFVGGTL-LKPQMWLEQRIPDWLTT 319 (324)
T ss_pred HhCCCC-CEEEEecCCCCCCCh--hhChHHHHhC--CCeEEEECCCCCceeeCCCCC-CCCCccHHHHHHHHHHH
Confidence 455554 999999999998643 3334454444 468999999999954443221 1111233 455677754
No 76
>PLN02511 hydrolase
Probab=94.87 E-value=0.041 Score=42.51 Aligned_cols=72 Identities=17% Similarity=0.146 Sum_probs=42.6
Q ss_pred CcccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHH-HHHHHHHHHHHHHhh
Q 043546 23 DLARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTN-ALELTNKFISFIKQN 98 (110)
Q Consensus 23 ~l~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~-a~~~~~~i~~fl~~~ 98 (110)
.+..+.. ||||++|+.|++...... ...+.+.. ..+++.+.++++|.-.+..+.... ..=+.+.+.+||+..
T Consensus 293 ~L~~I~v-PtLiI~g~dDpi~p~~~~-~~~~~~~~--p~~~l~~~~~gGH~~~~E~p~~~~~~~w~~~~i~~Fl~~~ 365 (388)
T PLN02511 293 SIKHVRV-PLLCIQAANDPIAPARGI-PREDIKAN--PNCLLIVTPSGGHLGWVAGPEAPFGAPWTDPVVMEFLEAL 365 (388)
T ss_pred hhccCCC-CeEEEEcCCCCcCCcccC-cHhHHhcC--CCEEEEECCCcceeccccCCCCCCCCccHHHHHHHHHHHH
Confidence 3455554 999999999998653321 12233444 568999999999965544332100 001235556666654
No 77
>PRK11071 esterase YqiA; Provisional
Probab=94.78 E-value=0.074 Score=37.09 Aligned_cols=52 Identities=10% Similarity=0.048 Sum_probs=35.7
Q ss_pred cEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHH
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIK 96 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~ 96 (110)
|++|+.|..|.+.+ .+.+.++.+ + +...+.+|.+|.|..+ ++.++.+.+|++
T Consensus 138 ~v~iihg~~De~V~--~~~a~~~~~-~----~~~~~~~ggdH~f~~~-------~~~~~~i~~fl~ 189 (190)
T PRK11071 138 LIWLLQQTGDEVLD--YRQAVAYYA-A----CRQTVEEGGNHAFVGF-------ERYFNQIVDFLG 189 (190)
T ss_pred hEEEEEeCCCCcCC--HHHHHHHHH-h----cceEEECCCCcchhhH-------HHhHHHHHHHhc
Confidence 77899999998753 233334333 2 2455779999999533 567888888874
No 78
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=93.40 E-value=0.21 Score=34.50 Aligned_cols=53 Identities=17% Similarity=0.208 Sum_probs=32.9
Q ss_pred cEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCC--CcHHHHHHHH
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNP--TCTNALELTN 89 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~--~~~~a~~~~~ 89 (110)
|++|+.+++|+.. ..+.+++|.+. | ..++++.++.+| |..-.+ ..|+..+.++
T Consensus 116 ~~~viaS~nDp~v--p~~~a~~~A~~-l--~a~~~~~~~~GH-f~~~~G~~~~p~~~~~l~ 170 (171)
T PF06821_consen 116 PSIVIASDNDPYV--PFERAQRLAQR-L--GAELIILGGGGH-FNAASGFGPWPEGLDLLQ 170 (171)
T ss_dssp CEEEEEETTBSSS---HHHHHHHHHH-H--T-EEEEETS-TT-SSGGGTHSS-HHHHHHHH
T ss_pred CeEEEEcCCCCcc--CHHHHHHHHHH-c--CCCeEECCCCCC-cccccCCCchHHHHHHhc
Confidence 7799999999986 23444444444 2 278999999999 765433 4455555543
No 79
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=93.34 E-value=0.22 Score=33.94 Aligned_cols=43 Identities=30% Similarity=0.280 Sum_probs=34.8
Q ss_pred cEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeec
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLR 77 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~ 77 (110)
|++++.|+.|++.+ ......+.+.- ...++++.++.+|.....
T Consensus 177 p~l~i~~~~D~~~p--~~~~~~~~~~~--~~~~~~~~~~~GH~~~~~ 219 (230)
T PF00561_consen 177 PTLIIWGEDDPLVP--PESSEQLAKLI--PNSQLVLIEGSGHFAFLE 219 (230)
T ss_dssp EEEEEEETTCSSSH--HHHHHHHHHHS--TTEEEEEETTCCSTHHHH
T ss_pred CeEEEEeCCCCCCC--HHHHHHHHHhc--CCCEEEECCCCChHHHhc
Confidence 99999999999984 45556677776 679999999999966543
No 80
>COG1647 Esterase/lipase [General function prediction only]
Probab=93.30 E-value=0.3 Score=35.75 Aligned_cols=59 Identities=20% Similarity=0.329 Sum_probs=43.2
Q ss_pred CcEEEEecCCCccchH--HHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHH
Q 043546 30 ERVLIFVAERDYLCPA--GKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIK 96 (110)
Q Consensus 30 PP~lv~~g~~D~L~d~--~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~ 96 (110)
-||+|+.|++|++.+. +.-+.+.... .+=++..|++-+|+.-.- .+.++..+++..||+
T Consensus 182 ~pt~vvq~~~D~mv~~~sA~~Iy~~v~s----~~KeL~~~e~SgHVIt~D----~Erd~v~e~V~~FL~ 242 (243)
T COG1647 182 SPTLVVQGRQDEMVPAESANFIYDHVES----DDKELKWLEGSGHVITLD----KERDQVEEDVITFLE 242 (243)
T ss_pred cchhheecccCCCCCHHHHHHHHHhccC----CcceeEEEccCCceeecc----hhHHHHHHHHHHHhh
Confidence 4999999999988653 3333443332 357999999999976432 467778899999986
No 81
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=92.82 E-value=0.36 Score=36.93 Aligned_cols=62 Identities=21% Similarity=0.175 Sum_probs=42.3
Q ss_pred CcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 30 ERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 30 PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
.|+++++|+.|+..+-. .+.+..++.= .-..+.++++|.+| |... +.-++..+.+.+||++.
T Consensus 259 iPv~fi~G~~D~v~~~p-~~~~~~rk~v-p~l~~~vv~~~~gH-~vqq----e~p~~v~~~i~~f~~~~ 320 (322)
T KOG4178|consen 259 IPVLFIWGDLDPVLPYP-IFGELYRKDV-PRLTERVVIEGIGH-FVQQ----EKPQEVNQAILGFINSF 320 (322)
T ss_pred cceEEEEecCcccccch-hHHHHHHHhh-ccccceEEecCCcc-cccc----cCHHHHHHHHHHHHHhh
Confidence 59999999999877665 3333333331 01237889999999 5433 23457788889998864
No 82
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=92.12 E-value=0.4 Score=34.26 Aligned_cols=45 Identities=24% Similarity=0.197 Sum_probs=39.3
Q ss_pred CcEEEEecCCCcc--chHHHHHHHHHHhcCCcccEEEEEeCCCceeeee
Q 043546 30 ERVLIFVAERDYL--CPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYL 76 (110)
Q Consensus 30 PP~lv~~g~~D~L--~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~ 76 (110)
.|-+.+.+..|.+ .++.+++++..++.| .+|+...+++..|+-+.
T Consensus 179 ~p~lylYS~~D~l~~~~~ve~~~~~~~~~G--~~V~~~~f~~S~HV~H~ 225 (240)
T PF05705_consen 179 CPRLYLYSKADPLIPWRDVEEHAEEARRKG--WDVRAEKFEDSPHVAHL 225 (240)
T ss_pred CCeEEecCCCCcCcCHHHHHHHHHHHHHcC--CeEEEecCCCCchhhhc
Confidence 3788999999977 556799999999999 78999999999998664
No 83
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=91.22 E-value=1.3 Score=31.21 Aligned_cols=64 Identities=19% Similarity=0.269 Sum_probs=45.1
Q ss_pred CcEEEEecCCCccc--hHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhhh
Q 043546 30 ERVLIFVAERDYLC--PAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQNN 99 (110)
Q Consensus 30 PP~lv~~g~~D~L~--d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~~ 99 (110)
.|+|++.|+.|... ..+..+.++.+.. +.+...++++.|.... ...+...+.++++.+|+.+..
T Consensus 233 ~P~l~~~G~~D~~vp~~~~~~~~~~~~~~----~~~~~~~~~~~H~~~~--~~~~~~~~~~~~~~~f~~~~l 298 (299)
T COG1073 233 RPVLLVHGERDEVVPLRDAEDLYEAARER----PKKLLFVPGGGHIDLY--DNPPAVEQALDKLAEFLERHL 298 (299)
T ss_pred cceEEEecCCCcccchhhhHHHHhhhccC----CceEEEecCCcccccc--CccHHHHHHHHHHHHHHHHhc
Confidence 39999999999664 4455554444332 4688889999996543 234556688999999998763
No 84
>COG0627 Predicted esterase [General function prediction only]
Probab=91.12 E-value=0.29 Score=37.30 Aligned_cols=61 Identities=13% Similarity=0.244 Sum_probs=49.3
Q ss_pred CcEEEEecCCCccch-H---HHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhhh
Q 043546 30 ERVLIFVAERDYLCP-A---GKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQNN 99 (110)
Q Consensus 30 PP~lv~~g~~D~L~d-~---~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~~ 99 (110)
++.++-.|..|.+.. . .+.+.++++++| .+.++...++..|.|.... ..+++...|+....
T Consensus 248 ~~~~~d~g~ad~~~~~~~~~~~~~~~a~~~~g--~~~~~~~~~~G~Hsw~~w~-------~~l~~~~~~~a~~l 312 (316)
T COG0627 248 PELLIDNGPADFFLAANNLSTRAFAEALRAAG--IPNGVRDQPGGDHSWYFWA-------SQLADHLPWLAGAL 312 (316)
T ss_pred CccccccccchhhhhhcccCHHHHHHHHHhcC--CCceeeeCCCCCcCHHHHH-------HHHHHHHHHHHHHh
Confidence 678888888887765 3 789999999999 8899999999999998653 55677777776653
No 85
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=90.94 E-value=1.3 Score=31.38 Aligned_cols=68 Identities=19% Similarity=0.196 Sum_probs=43.1
Q ss_pred CcccCCCCcEEEEecCCCcc--chHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecC---C-CcHH-HHHHHHHHHHHH
Q 043546 23 DLARLGCERVLIFVAERDYL--CPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRN---P-TCTN-ALELTNKFISFI 95 (110)
Q Consensus 23 ~l~~l~~PP~lv~~g~~D~L--~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~---~-~~~~-a~~~~~~i~~fl 95 (110)
.|.++.. ||+|+.|+.|+| +|+.-.|+ .- -+++++..++..|..--.. . ..+. -+...++++.|.
T Consensus 137 HL~gl~t-Ptli~qGtrD~fGtr~~Va~y~-----ls--~~iev~wl~~adHDLkp~k~vsgls~~~hL~~~A~~va~~~ 208 (213)
T COG3571 137 HLTGLKT-PTLITQGTRDEFGTRDEVAGYA-----LS--DPIEVVWLEDADHDLKPRKLVSGLSTADHLKTLAEQVAGWA 208 (213)
T ss_pred hccCCCC-CeEEeecccccccCHHHHHhhh-----cC--CceEEEEeccCccccccccccccccHHHHHHHHHHHHHHHH
Confidence 4666664 999999999998 55442222 12 4789999999999643221 1 1122 233446777777
Q ss_pred Hhh
Q 043546 96 KQN 98 (110)
Q Consensus 96 ~~~ 98 (110)
++.
T Consensus 209 ~~l 211 (213)
T COG3571 209 RRL 211 (213)
T ss_pred hhc
Confidence 654
No 86
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=90.65 E-value=0.71 Score=32.49 Aligned_cols=51 Identities=20% Similarity=0.268 Sum_probs=36.3
Q ss_pred cEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHH
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFI 95 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl 95 (110)
+++|+.+..|.+.|-.++++. . .| +...+.+|.+|.|..+. +.+..|.+|+
T Consensus 136 ~~lvll~~~DEvLd~~~a~~~-~--~~----~~~~i~~ggdH~f~~f~-------~~l~~i~~f~ 186 (187)
T PF05728_consen 136 RYLVLLQTGDEVLDYREAVAK-Y--RG----CAQIIEEGGDHSFQDFE-------EYLPQIIAFL 186 (187)
T ss_pred cEEEEEecCCcccCHHHHHHH-h--cC----ceEEEEeCCCCCCccHH-------HHHHHHHHhh
Confidence 899999999999887444333 2 23 34456788899998653 5567777775
No 87
>PRK05855 short chain dehydrogenase; Validated
Probab=89.58 E-value=0.64 Score=36.74 Aligned_cols=59 Identities=17% Similarity=0.172 Sum_probs=37.7
Q ss_pred CcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 30 ERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 30 PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
.|++|+.|+.|.+... ...+++.+.- ...++++.++ +|..+.. ..+.+.+.+.+|+.+.
T Consensus 234 ~P~lii~G~~D~~v~~--~~~~~~~~~~--~~~~~~~~~~-gH~~~~e-----~p~~~~~~i~~fl~~~ 292 (582)
T PRK05855 234 VPVQLIVPTGDPYVRP--ALYDDLSRWV--PRLWRREIKA-GHWLPMS-----HPQVLAAAVAEFVDAV 292 (582)
T ss_pred CceEEEEeCCCcccCH--HHhccccccC--CcceEEEccC-CCcchhh-----ChhHHHHHHHHHHHhc
Confidence 3999999999998753 3334454432 3456677764 7844322 2345667788888764
No 88
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=89.37 E-value=1.4 Score=29.35 Aligned_cols=45 Identities=24% Similarity=0.136 Sum_probs=30.5
Q ss_pred CcEEEEecCCCccchHHHHHHHHHHhcCCcc-cEEEEEeCCCceeeeecC
Q 043546 30 ERVLIFVAERDYLCPAGKNYYEELKKRGWKG-RVELVEHLDEKHVFYLRN 78 (110)
Q Consensus 30 PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v-~v~~~~~~g~~H~f~~~~ 78 (110)
-|++++.|+.|.+..... ...+.+.. . ..++.+.++.+|......
T Consensus 222 ~P~l~i~g~~d~~~~~~~--~~~~~~~~--~~~~~~~~~~~~gH~~~~~~ 267 (282)
T COG0596 222 VPTLIIHGEDDPVVPAEL--ARRLAAAL--PNDARLVVIPGAGHFPHLEA 267 (282)
T ss_pred CCeEEEecCCCCcCCHHH--HHHHHhhC--CCCceEEEeCCCCCcchhhc
Confidence 399999999995544432 33333333 3 379999999999665443
No 89
>PF10605 3HBOH: 3HB-oligomer hydrolase (3HBOH) ; InterPro: IPR016582 This entry represents a group of predicted D-(-)-3-hydroxybutyrate oligomer hydrolases (also known as 3HB-oligomer hydrolase), which function in the degradation of poly-3-hydroxybutyrate (PHB). These enzymes catalyse the hydrolysis of D(-)-3-hydroxybutyrate oligomers (3HB-oligomers) into 3HB-monomers [, ].; GO: 0047989 hydroxybutyrate-dimer hydrolase activity, 0019605 butyrate metabolic process, 0005615 extracellular space
Probab=88.88 E-value=2.1 Score=35.63 Aligned_cols=80 Identities=16% Similarity=0.193 Sum_probs=59.9
Q ss_pred CcccCCCCcEEEEecCCCcc---chHHHHHHHHHHhc-CCcccEEEEEeCCCceeeeec----------CCCcHHHHHHH
Q 043546 23 DLARLGCERVLIFVAERDYL---CPAGKNYYEELKKR-GWKGRVELVEHLDEKHVFYLR----------NPTCTNALELT 88 (110)
Q Consensus 23 ~l~~l~~PP~lv~~g~~D~L---~d~~~~~a~~L~~~-G~~v~v~~~~~~g~~H~f~~~----------~~~~~~a~~~~ 88 (110)
+|++. |++|++|..|.| -..++.|....++. |-.-...+.+..+..| |..| .|..+-..+++
T Consensus 552 ~L~GK---PaIiVhGR~DaLlPvnh~Sr~Y~~ln~~~eG~~s~lrYyeV~naqH-fDaf~~~pG~~~r~VPlh~Y~~qAL 627 (690)
T PF10605_consen 552 NLHGK---PAIIVHGRSDALLPVNHTSRPYLGLNRQVEGRASRLRYYEVTNAQH-FDAFLDFPGFDTRFVPLHPYFFQAL 627 (690)
T ss_pred CcCCC---ceEEEecccceecccCCCchHHHHHhhhhcccccceeEEEecCCee-chhhccCCCCCcccccccHHHHHHH
Confidence 45543 999999999955 66788999888764 4102578888889999 6654 24677788999
Q ss_pred HHHHHHHHhhhCCccchh
Q 043546 89 NKFISFIKQNNGSLRSSI 106 (110)
Q Consensus 89 ~~i~~fl~~~~~~~~~~~ 106 (110)
+.|-.+|+....-|.|++
T Consensus 628 d~M~a~L~~G~~LPpSQV 645 (690)
T PF10605_consen 628 DLMWAHLKSGAALPPSQV 645 (690)
T ss_pred HHHHHHhhcCCCCCccce
Confidence 999999998777676653
No 90
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=88.73 E-value=0.55 Score=37.13 Aligned_cols=65 Identities=14% Similarity=0.104 Sum_probs=42.3
Q ss_pred CcEEEEecCCCccchHHH-HHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 30 ERVLIFVAERDYLCPAGK-NYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 30 PP~lv~~g~~D~L~d~~~-~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
.||+|++|+.|-+..|-. .|.+.|...| ..+-....||.++... .+..+......+.+.+||...
T Consensus 190 ~P~VIv~gGlDs~qeD~~~l~~~~l~~rG--iA~LtvDmPG~G~s~~--~~l~~D~~~l~~aVLd~L~~~ 255 (411)
T PF06500_consen 190 YPTVIVCGGLDSLQEDLYRLFRDYLAPRG--IAMLTVDMPGQGESPK--WPLTQDSSRLHQAVLDYLASR 255 (411)
T ss_dssp EEEEEEE--TTS-GGGGHHHHHCCCHHCT---EEEEE--TTSGGGTT--T-S-S-CCHHHHHHHHHHHHS
T ss_pred CCEEEEeCCcchhHHHHHHHHHHHHHhCC--CEEEEEccCCCccccc--CCCCcCHHHHHHHHHHHHhcC
Confidence 499999999999987755 4556789999 7799999999998532 122334456778888888753
No 91
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=88.39 E-value=0.39 Score=35.14 Aligned_cols=58 Identities=12% Similarity=0.248 Sum_probs=43.4
Q ss_pred CCCCCCCCCcCcccCCCCcEEEEecCCC--ccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecC
Q 043546 13 QDPRMKPPAEDLARLGCERVLIFVAERD--YLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRN 78 (110)
Q Consensus 13 ~~p~~sP~~~~l~~l~~PP~lv~~g~~D--~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~ 78 (110)
+-..+||....+.++.+ |.||+.|++| .|..+.+.|+..++++. +..++|-+| |.++.
T Consensus 192 ~ae~~Scdl~~~~~v~~-~ilVv~~~~espklieQnrdf~~q~~~a~------~~~f~n~~h-y~I~~ 251 (270)
T KOG4627|consen 192 NAESVSCDLWEYTDVTV-WILVVAAEHESPKLIEQNRDFADQLRKAS------FTLFKNYDH-YDIIE 251 (270)
T ss_pred hhhhcCccHHHhcCcee-eeeEeeecccCcHHHHhhhhHHHHhhhcc------eeecCCcch-hhHHH
Confidence 34556772223455555 7999999999 48999999999988765 558999999 66654
No 92
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=87.51 E-value=0.73 Score=34.96 Aligned_cols=43 Identities=12% Similarity=0.115 Sum_probs=34.3
Q ss_pred EEEEecCCC-ccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeec
Q 043546 32 VLIFVAERD-YLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLR 77 (110)
Q Consensus 32 ~lv~~g~~D-~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~ 77 (110)
..+++++.+ .+....+++++.|++.| .+..+.+|+| +|.+..-
T Consensus 241 ~~l~~g~~~~~~~~pNr~L~~~L~~~g--~~~~yre~~G-gHdw~~W 284 (299)
T COG2382 241 IVLTTGGEEGDFLRPNRALAAQLEKKG--IPYYYREYPG-GHDWAWW 284 (299)
T ss_pred EEeecCCccccccchhHHHHHHHHhcC--CcceeeecCC-CCchhHh
Confidence 334444443 57889999999999999 9999999999 9987644
No 93
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=86.25 E-value=1.7 Score=31.32 Aligned_cols=55 Identities=16% Similarity=0.247 Sum_probs=41.4
Q ss_pred cEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHH
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIK 96 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~ 96 (110)
|.+|+.|+.| |....+++|+..-- .+.++++.+|..|=|. - .-..+.+.+.+|+.
T Consensus 151 ~~lvi~g~~D----dvv~l~~~l~~~~~-~~~~~i~i~~a~HFF~-g-----Kl~~l~~~i~~~l~ 205 (210)
T COG2945 151 PGLVIQGDAD----DVVDLVAVLKWQES-IKITVITIPGADHFFH-G-----KLIELRDTIADFLE 205 (210)
T ss_pred CceeEecChh----hhhcHHHHHHhhcC-CCCceEEecCCCceec-c-----cHHHHHHHHHHHhh
Confidence 8999999988 77788888887642 6899999999999443 2 12355666777773
No 94
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=84.97 E-value=1.7 Score=35.45 Aligned_cols=51 Identities=18% Similarity=0.136 Sum_probs=33.0
Q ss_pred CcccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecC
Q 043546 23 DLARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRN 78 (110)
Q Consensus 23 ~l~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~ 78 (110)
+++.+.+ |+|++.|+.|.+...... .++.+.- ...+..++++.+|...+..
T Consensus 410 dL~~I~v-PvLvV~G~~D~IvP~~sa--~~l~~~i--~~~~~~vL~~sGHi~~ien 460 (532)
T TIGR01838 410 DLSKVKV-PVYIIATREDHIAPWQSA--YRGAALL--GGPKTFVLGESGHIAGVVN 460 (532)
T ss_pred chhhCCC-CEEEEeeCCCCcCCHHHH--HHHHHHC--CCCEEEEECCCCCchHhhC
Confidence 5666664 999999999988743222 2222221 2356678899999766554
No 95
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=84.37 E-value=2.4 Score=25.15 Aligned_cols=32 Identities=22% Similarity=0.220 Sum_probs=24.7
Q ss_pred EEEEecCCCccchHHHHHHHHHHhcCCcccEEEE
Q 043546 32 VLIFVAERDYLCPAGKNYYEELKKRGWKGRVELV 65 (110)
Q Consensus 32 ~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~ 65 (110)
-+++++..+...+.+..+++.|++.| ..|++.
T Consensus 3 ~v~ii~~~~~~~~~a~~~~~~Lr~~g--~~v~~d 34 (91)
T cd00860 3 QVVVIPVTDEHLDYAKEVAKKLSDAG--IRVEVD 34 (91)
T ss_pred EEEEEeeCchHHHHHHHHHHHHHHCC--CEEEEE
Confidence 33455555678889999999999999 777764
No 96
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.92 E-value=0.2 Score=35.63 Aligned_cols=43 Identities=7% Similarity=0.009 Sum_probs=39.9
Q ss_pred cEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeee
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFY 75 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~ 75 (110)
.++.|+|..|++.++...+.+.|.+-. ++.-+.+|.|..|.+.
T Consensus 175 ~~vfc~G~e~~~L~~~~~L~~~l~dKq--ipaw~~~WggvaHdw~ 217 (227)
T COG4947 175 DMVFCIGDEDPFLDNNQHLSRLLSDKQ--IPAWMHVWGGVAHDWG 217 (227)
T ss_pred cEEEEecCccccccchHHHHHHhcccc--ccHHHHHhcccccccH
Confidence 778999999999999999999999998 8999999999999775
No 97
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=83.81 E-value=2.4 Score=32.41 Aligned_cols=60 Identities=22% Similarity=0.292 Sum_probs=46.5
Q ss_pred CcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 30 ERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 30 PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
-||+.+.|.++.+..+ +...++++.= ..+++++.+.++|.-+...| +++++.+.+|+.+.
T Consensus 254 ~pvlfi~g~~S~fv~~--~~~~~~~~~f--p~~e~~~ld~aGHwVh~E~P-----~~~~~~i~~Fl~~~ 313 (315)
T KOG2382|consen 254 GPVLFIKGLQSKFVPD--EHYPRMEKIF--PNVEVHELDEAGHWVHLEKP-----EEFIESISEFLEEP 313 (315)
T ss_pred cceeEEecCCCCCcCh--hHHHHHHHhc--cchheeecccCCceeecCCH-----HHHHHHHHHHhccc
Confidence 4999999999998743 4446777774 67999999999997765554 47788888888654
No 98
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=83.64 E-value=5 Score=29.26 Aligned_cols=38 Identities=8% Similarity=0.039 Sum_probs=24.1
Q ss_pred cEEEEecCCCccc--hHHHHHHHHHHhcCCcccEEEEEeCCCceeee
Q 043546 31 RVLIFVAERDYLC--PAGKNYYEELKKRGWKGRVELVEHLDEKHVFY 75 (110)
Q Consensus 31 P~lv~~g~~D~L~--d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~ 75 (110)
|+++++|+.|... +.++.+++++ .| .++++.+ .+|.-+
T Consensus 213 P~l~I~g~~D~~ip~~~~~~m~~~~--~~----~~~~~l~-~gH~p~ 252 (273)
T PLN02211 213 PRVYIKTLHDHVVKPEQQEAMIKRW--PP----SQVYELE-SDHSPF 252 (273)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhC--Cc----cEEEEEC-CCCCcc
Confidence 9999999999765 3334444332 13 3666666 689543
No 99
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=83.50 E-value=6.5 Score=27.77 Aligned_cols=57 Identities=16% Similarity=0.226 Sum_probs=39.0
Q ss_pred CCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCC--CcHHHHHHHHH
Q 043546 27 LGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNP--TCTNALELTNK 90 (110)
Q Consensus 27 l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~--~~~~a~~~~~~ 90 (110)
+++ |.+++...+|+.. +-++++.+.++ |+ ..++.....+| |..... .-|+....+++
T Consensus 116 lpf-ps~vvaSrnDp~~--~~~~a~~~a~~-wg--s~lv~~g~~GH-iN~~sG~g~wpeg~~~l~~ 174 (181)
T COG3545 116 LPF-PSVVVASRNDPYV--SYEHAEDLANA-WG--SALVDVGEGGH-INAESGFGPWPEGYALLAQ 174 (181)
T ss_pred CCC-ceeEEEecCCCCC--CHHHHHHHHHh-cc--Hhheecccccc-cchhhcCCCcHHHHHHHHH
Confidence 444 9999999999997 66677777766 54 77788888888 544332 44555554443
No 100
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=81.17 E-value=5.4 Score=32.01 Aligned_cols=65 Identities=15% Similarity=0.236 Sum_probs=48.0
Q ss_pred CcEEEEecCCCcc--chHHHHHHHHHHhcCCcc-------cEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 30 ERVLIFVAERDYL--CPAGKNYYEELKKRGWKG-------RVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 30 PP~lv~~g~~D~L--~d~~~~~a~~L~~~G~~v-------~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
-.+++.+|..|++ -...+.|.+++.+.- +. =+.|...|||.|+.--..+ ..-+.+..+.+|+.+-
T Consensus 354 GKLI~~HG~aD~~I~p~~ti~YY~~V~~~~-g~~~~~v~dF~RlF~vPGm~HC~gG~g~---~~~d~l~aL~~WVE~G 427 (474)
T PF07519_consen 354 GKLILYHGWADPLIPPQGTIDYYERVVARM-GGALADVDDFYRLFMVPGMGHCGGGPGP---DPFDALTALVDWVENG 427 (474)
T ss_pred CeEEEEecCCCCccCCCcHHHHHHHHHHhc-ccccccccceeEEEecCCCcccCCCCCC---CCCCHHHHHHHHHhCC
Confidence 3789999999976 567888888888752 02 2689999999998754422 2227888899998753
No 101
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=80.90 E-value=0.86 Score=34.64 Aligned_cols=66 Identities=14% Similarity=0.131 Sum_probs=8.1
Q ss_pred cCCCCcEEEEecCCCcc---chHHHHHHHHHHhcCCccc----EEEEEeCCCceeeeecCCCcHH-HHHHHHHHHHHHH
Q 043546 26 RLGCERVLIFVAERDYL---CPAGKNYYEELKKRGWKGR----VELVEHLDEKHVFYLRNPTCTN-ALELTNKFISFIK 96 (110)
Q Consensus 26 ~l~~PP~lv~~g~~D~L---~d~~~~~a~~L~~~G~~v~----v~~~~~~g~~H~f~~~~~~~~~-a~~~~~~i~~fl~ 96 (110)
.+. .|+||+.++.|.. .-+-.++.+|++++- .+ -...+.||+.|.... +..++ -+.+++++.+||+
T Consensus 230 ~v~-~plLvl~Sg~DEyvP~~vdk~~Ll~rw~~a~--~~~~~s~~S~iI~GA~H~~~~--~~~~~~~~~l~~rV~~fl~ 303 (303)
T PF08538_consen 230 KVS-KPLLVLYSGKDEYVPPWVDKEALLERWKAAT--NPKIWSPLSGIIPGASHNVSG--PSQAEAREWLVERVVKFLK 303 (303)
T ss_dssp G---S-EEEEEE--TT---------------------------------------------------------------
T ss_pred cCC-CceEEEecCCCceeccccccccccccccccc--ccccccccccccccccccccc--cccccccccccccccccCC
Confidence 344 3999999999954 445566777777763 22 234588999996542 22222 2356788888875
No 102
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=80.51 E-value=2.2 Score=31.49 Aligned_cols=43 Identities=16% Similarity=0.108 Sum_probs=35.8
Q ss_pred CcEEEEecCCCc--cchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecC
Q 043546 30 ERVLIFVAERDY--LCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRN 78 (110)
Q Consensus 30 PP~lv~~g~~D~--L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~ 78 (110)
.|+|-+.|..|- -..++.+||+.+.. -++.+.||+.|+|....
T Consensus 200 C~VLTvhGs~D~IVPve~AkefAk~i~n------H~L~iIEgADHnyt~~q 244 (269)
T KOG4667|consen 200 CRVLTVHGSEDEIVPVEDAKEFAKIIPN------HKLEIIEGADHNYTGHQ 244 (269)
T ss_pred CceEEEeccCCceeechhHHHHHHhccC------CceEEecCCCcCccchh
Confidence 499999999994 47889999998754 37889999999997553
No 103
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=80.15 E-value=3.8 Score=30.52 Aligned_cols=65 Identities=25% Similarity=0.284 Sum_probs=44.8
Q ss_pred cccCCCCcEEEEecCCCccc--hHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhhhC
Q 043546 24 LARLGCERVLIFVAERDYLC--PAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQNNG 100 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D~L~--d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~~~ 100 (110)
++...+ |+||++|+.|... ..|.++.++.+.. ++-...+|.+|...... .+.++.+.+|+.....
T Consensus 188 I~~i~~-PVLiiHgtdDevv~~sHg~~Lye~~k~~-----~epl~v~g~gH~~~~~~------~~yi~~l~~f~~~~~~ 254 (258)
T KOG1552|consen 188 ISKITC-PVLIIHGTDDEVVDFSHGKALYERCKEK-----VEPLWVKGAGHNDIELY------PEYIEHLRRFISSVLP 254 (258)
T ss_pred ceeccC-CEEEEecccCceecccccHHHHHhcccc-----CCCcEEecCCCcccccC------HHHHHHHHHHHHHhcc
Confidence 334455 9999999999764 3467777776544 67778889999655332 2567777777766533
No 104
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=80.13 E-value=5.6 Score=31.42 Aligned_cols=72 Identities=14% Similarity=0.018 Sum_probs=43.0
Q ss_pred CcccCC-CCcEEEEecCCCccchHHHH--HHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 23 DLARLG-CERVLIFVAERDYLCPAGKN--YYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 23 ~l~~l~-~PP~lv~~g~~D~L~d~~~~--~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
+++.+. + |+|.+.|+.|-+..-+.. ..+.....+- -+-+..+.++++|- =++.+ ....++..-.+.+||.++
T Consensus 332 dl~~I~~~-pll~V~ge~D~I~p~~qt~aa~~l~~~~~s-~~k~~~~~~~~GH~-Gvf~G-~r~~~~i~P~i~~wl~~~ 406 (406)
T TIGR01849 332 DPGAITRV-ALLTVEGENDDISGLGQTKAALRLCTGIPE-DMKRHHLQPGVGHY-GVFSG-SRFREEIYPLVREFIRRN 406 (406)
T ss_pred cHHHCccc-ceEEEeccCCCcCCHHHhHHHHHHhhcCCh-hhceEeecCCCCeE-EEeeC-hhhhhhhchHHHHHHHhC
Confidence 445555 5 999999999987643333 3332212221 23457777899994 33422 223345678889998764
No 105
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=79.46 E-value=2.6 Score=27.84 Aligned_cols=38 Identities=18% Similarity=-0.020 Sum_probs=31.0
Q ss_pred CcEEEEecCCCccc-hHHHHHHHHHHhc-CCcccEEEEEeCC
Q 043546 30 ERVLIFVAERDYLC-PAGKNYYEELKKR-GWKGRVELVEHLD 69 (110)
Q Consensus 30 PP~lv~~g~~D~L~-d~~~~~a~~L~~~-G~~v~v~~~~~~g 69 (110)
|++||+-+.....+ +...++|+.|++. | ++|.+..|..
T Consensus 1 ~kVfI~Ys~d~~~h~~~V~~la~~L~~~~g--~~V~lD~~~~ 40 (150)
T PF08357_consen 1 RKVFISYSHDSEEHKEWVLALAEFLRQNCG--IDVILDQWEL 40 (150)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHHHHhccC--CceeecHHhh
Confidence 46777777755654 8889999999999 9 8899888875
No 106
>PRK04940 hypothetical protein; Provisional
Probab=78.78 E-value=6.6 Score=27.63 Aligned_cols=53 Identities=21% Similarity=0.266 Sum_probs=36.1
Q ss_pred cEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHH
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIK 96 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~ 96 (110)
+.+++..+.|.+.|--+ .++++... -...+.+|..|+|..+. +.+..|.+|++
T Consensus 126 r~~vllq~gDEvLDyr~-a~~~y~~~-----y~~~v~~GGdH~f~~fe-------~~l~~I~~F~~ 178 (180)
T PRK04940 126 RCLVILSRNDEVLDSQR-TAEELHPY-----YEIVWDEEQTHKFKNIS-------PHLQRIKAFKT 178 (180)
T ss_pred cEEEEEeCCCcccCHHH-HHHHhccC-----ceEEEECCCCCCCCCHH-------HHHHHHHHHHh
Confidence 45888888887765433 23333222 15779999999998664 56778888874
No 107
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=76.88 E-value=5.4 Score=23.72 Aligned_cols=33 Identities=18% Similarity=0.060 Sum_probs=24.4
Q ss_pred CcEEEEecCCC---ccchHHHHHHHHHHhcCCcccEEE
Q 043546 30 ERVLIFVAERD---YLCPAGKNYYEELKKRGWKGRVEL 64 (110)
Q Consensus 30 PP~lv~~g~~D---~L~d~~~~~a~~L~~~G~~v~v~~ 64 (110)
|..+++.+..+ .....+...++.|++.| ..|++
T Consensus 1 p~~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g--~~v~~ 36 (94)
T cd00738 1 PIDVAIVPLTDPRVEAREYAQKLLNALLANG--IRVLY 36 (94)
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHHHHHCC--CEEEe
Confidence 34444555556 67888999999999999 77775
No 108
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=76.33 E-value=17 Score=26.83 Aligned_cols=56 Identities=14% Similarity=0.183 Sum_probs=35.4
Q ss_pred cEEEEecCCCccchHHHHHHHHHHh-cCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHH
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKK-RGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIK 96 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~-~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~ 96 (110)
|+.++.|+.|..... +-....++ .+ ...++++++| +|-|. . ....++++.+.+.+.
T Consensus 178 pi~~~~G~~D~~vs~--~~~~~W~~~t~--~~f~l~~fdG-gHFfl-~----~~~~~v~~~i~~~l~ 234 (244)
T COG3208 178 PIHAFGGEKDHEVSR--DELGAWREHTK--GDFTLRVFDG-GHFFL-N----QQREEVLARLEQHLA 234 (244)
T ss_pred ceEEeccCcchhccH--HHHHHHHHhhc--CCceEEEecC-cceeh-h----hhHHHHHHHHHHHhh
Confidence 999999999988733 33333333 34 5789999996 68443 2 234455566655554
No 109
>KOG2521 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.21 E-value=19 Score=27.95 Aligned_cols=62 Identities=16% Similarity=0.184 Sum_probs=47.0
Q ss_pred cEEEEecCCCc--cchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 31 RVLIFVAERDY--LCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 31 P~lv~~g~~D~--L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
+.+-..+..|. -.++.+.|+++.++-| +.|+...+.+..|.- .+... | ....+....|++..
T Consensus 227 ~~ly~~s~~d~v~~~~~ie~f~~~~~~~g--~~v~s~~~~ds~H~~-h~r~~-p--~~y~~~~~~Fl~~~ 290 (350)
T KOG2521|consen 227 NQLYLYSDNDDVLPADEIEKFIALRREKG--VNVKSVKFKDSEHVA-HFRSF-P--KTYLKKCSEFLRSV 290 (350)
T ss_pred cceeecCCccccccHHHHHHHHHHHHhcC--ceEEEeeccCcccee-eeccC-c--HHHHHHHHHHHHhc
Confidence 44444466664 3899999999999999 999999999999976 33322 2 35678888999886
No 110
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=74.10 E-value=17 Score=30.65 Aligned_cols=69 Identities=16% Similarity=0.240 Sum_probs=44.3
Q ss_pred cccCCCCcEEEEecCCCccchH--HHHHHHHHHhcCCcccEEEEEeCCCceeeeecCC--------CcHHHHHHHHHHHH
Q 043546 24 LARLGCERVLIFVAERDYLCPA--GKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNP--------TCTNALELTNKFIS 93 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D~L~d~--~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~--------~~~~a~~~~~~i~~ 93 (110)
+-.++. |+|++.|..|..+.. =+++++|+++ ++++++..|++|.+-.-.. +..-....++.|.+
T Consensus 300 Lldmk~-PVLFV~Gsnd~mcspn~ME~vreKMqA-----~~elhVI~~adhsmaipk~k~esegltqseVd~~i~~aI~e 373 (784)
T KOG3253|consen 300 LLDMKQ-PVLFVIGSNDHMCSPNSMEEVREKMQA-----EVELHVIGGADHSMAIPKRKVESEGLTQSEVDSAIAQAIKE 373 (784)
T ss_pred hHhcCC-ceEEEecCCcccCCHHHHHHHHHHhhc-----cceEEEecCCCccccCCccccccccccHHHHHHHHHHHHHH
Confidence 334453 999999999988643 3456666654 4689999999998765431 11222334456666
Q ss_pred HHHhh
Q 043546 94 FIKQN 98 (110)
Q Consensus 94 fl~~~ 98 (110)
|+...
T Consensus 374 fvt~~ 378 (784)
T KOG3253|consen 374 FVTIA 378 (784)
T ss_pred HHHHh
Confidence 66554
No 111
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=74.02 E-value=5.3 Score=33.56 Aligned_cols=49 Identities=14% Similarity=0.082 Sum_probs=36.1
Q ss_pred cCCCCcEEEEecCCCc--cchHHHHHHHHHHhcCCcc-cEEEEEeCCCceee
Q 043546 26 RLGCERVLIFVAERDY--LCPAGKNYYEELKKRGWKG-RVELVEHLDEKHVF 74 (110)
Q Consensus 26 ~l~~PP~lv~~g~~D~--L~d~~~~~a~~L~~~G~~v-~v~~~~~~g~~H~f 74 (110)
..+.|++|+.+|-.|+ ..=|.-++..+|++.+.+. ++-+..--+++||=
T Consensus 606 a~~YP~ilv~~Gl~D~rV~YwEpAKWvAkLR~~~td~~plLlkt~M~aGHgG 657 (682)
T COG1770 606 AQPYPAILVTTGLNDPRVQYWEPAKWVAKLRELKTDGNPLLLKTNMDAGHGG 657 (682)
T ss_pred cCCCCceEEEccccCCccccchHHHHHHHHhhcccCCCcEEEEecccccCCC
Confidence 3456999999999995 6788999999999987211 34445545778853
No 112
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=73.79 E-value=6.4 Score=22.82 Aligned_cols=32 Identities=16% Similarity=0.096 Sum_probs=23.5
Q ss_pred EEecCCCccchHHHHHHHHHHhcCCcccEEEEEe
Q 043546 34 IFVAERDYLCPAGKNYYEELKKRGWKGRVELVEH 67 (110)
Q Consensus 34 v~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~ 67 (110)
++....+..++.+.+++++|++.| ..|++...
T Consensus 5 ~i~~~~~~~~~~a~~i~~~Lr~~g--~~v~~~~~ 36 (91)
T cd00859 5 YVVPLGEGALSEALELAEQLRDAG--IKAEIDYG 36 (91)
T ss_pred EEEEcChHHHHHHHHHHHHHHHCC--CEEEEecC
Confidence 334444667788999999999999 77776443
No 113
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=73.24 E-value=8.2 Score=29.92 Aligned_cols=64 Identities=19% Similarity=0.188 Sum_probs=41.6
Q ss_pred CcEEEEecCCCccchH-HHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHH-HHHHHHHHHHhh
Q 043546 30 ERVLIFVAERDYLCPA-GKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALE-LTNKFISFIKQN 98 (110)
Q Consensus 30 PP~lv~~g~~D~L~d~-~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~-~~~~i~~fl~~~ 98 (110)
-|+||+.+..||+... ..-..+.+ .. ..|++..-+-.+|.=.+... ..+..- +.+++.+|+...
T Consensus 275 ~PtLii~A~DDP~~~~~~iP~~~~~--~n--p~v~l~~t~~GGHvGfl~~~-~~~~~~W~~~ri~~~l~~~ 340 (345)
T COG0429 275 KPTLIINAKDDPFMPPEVIPKLQEM--LN--PNVLLQLTEHGGHVGFLGGK-LLHPQMWLEQRILDWLDPF 340 (345)
T ss_pred cceEEEecCCCCCCChhhCCcchhc--CC--CceEEEeecCCceEEeccCc-cccchhhHHHHHHHHHHHH
Confidence 3999999999998644 44444433 34 56999999999997655532 112222 236677777653
No 114
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=73.07 E-value=9.9 Score=29.69 Aligned_cols=59 Identities=20% Similarity=0.231 Sum_probs=45.3
Q ss_pred cCCCCcEEEEecCCCc--cchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 26 RLGCERVLIFVAERDY--LCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 26 ~l~~PP~lv~~g~~D~--L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
+|.+ |-||+.|..|. +-|...-|.+.|. | +-.+...|+..|+... .++++.+..|++..
T Consensus 260 rL~~-PK~ii~atgDeFf~pD~~~~y~d~L~--G---~K~lr~vPN~~H~~~~--------~~~~~~l~~f~~~~ 320 (367)
T PF10142_consen 260 RLTM-PKYIINATGDEFFVPDSSNFYYDKLP--G---EKYLRYVPNAGHSLIG--------SDVVQSLRAFYNRI 320 (367)
T ss_pred hcCc-cEEEEecCCCceeccCchHHHHhhCC--C---CeeEEeCCCCCcccch--------HHHHHHHHHHHHHH
Confidence 4444 77888888885 4899999999986 4 4589999999996542 46778888888874
No 115
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=72.52 E-value=6.9 Score=31.29 Aligned_cols=61 Identities=13% Similarity=0.035 Sum_probs=41.1
Q ss_pred CcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHH
Q 043546 30 ERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIK 96 (110)
Q Consensus 30 PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~ 96 (110)
+.++.+-|++||-..++.... +.. .+....+.||+.||-.+-.-..++..+++..+.+|-.
T Consensus 352 ~rmlFVYG~nDPW~A~~f~l~----~g~--~ds~v~~~PggnHga~I~~L~~~~r~~a~a~l~~WaG 412 (448)
T PF05576_consen 352 PRMLFVYGENDPWSAEPFRLG----KGK--RDSYVFTAPGGNHGARIAGLPEAERAEATARLRRWAG 412 (448)
T ss_pred CeEEEEeCCCCCcccCccccC----CCC--cceEEEEcCCCcccccccCCCHHHHHHHHHHHHHHcC
Confidence 789999999999875554432 222 4567777799999966553333445556677777743
No 116
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=72.52 E-value=7.3 Score=25.00 Aligned_cols=34 Identities=24% Similarity=0.162 Sum_probs=25.0
Q ss_pred CcEEEEecCC--CccchHHHHHHHHHHhcCCcccEEEE
Q 043546 30 ERVLIFVAER--DYLCPAGKNYYEELKKRGWKGRVELV 65 (110)
Q Consensus 30 PP~lv~~g~~--D~L~d~~~~~a~~L~~~G~~v~v~~~ 65 (110)
|+-+++++.. +.....+.++++.|+++| ..|++.
T Consensus 26 p~~v~Ii~~~~~~~~~~~a~~la~~LR~~g--i~v~~d 61 (121)
T cd00858 26 PIKVAVLPLVKRDELVEIAKEISEELRELG--FSVKYD 61 (121)
T ss_pred CcEEEEEecCCcHHHHHHHHHHHHHHHHCC--CEEEEe
Confidence 3433444444 667889999999999999 778764
No 117
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=72.40 E-value=6.4 Score=28.59 Aligned_cols=44 Identities=23% Similarity=0.190 Sum_probs=33.2
Q ss_pred cccCCCCcEEEEecCCC-ccchHHHHHHHHHHhcCCcccEEEEEeCC
Q 043546 24 LARLGCERVLIFVAERD-YLCPAGKNYYEELKKRGWKGRVELVEHLD 69 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D-~L~d~~~~~a~~L~~~G~~v~v~~~~~~g 69 (110)
+..+.. |+|++.|-+| .+.+.+.+..++|++.+- ++..+++.|+
T Consensus 224 ~~~i~v-P~l~v~Gw~D~~~~~~~~~~~~~l~~~~~-~~~~Liigpw 268 (272)
T PF02129_consen 224 LDKIDV-PVLIVGGWYDTLFLRGALRAYEALRAPGS-KPQRLIIGPW 268 (272)
T ss_dssp HGG--S-EEEEEEETTCSSTSHHHHHHHHHHCTTST-C-EEEEEESE
T ss_pred HhhCCC-CEEEecccCCcccchHHHHHHHHhhcCCC-CCCEEEEeCC
Confidence 344554 9999999999 888999999999999871 2467777663
No 118
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=69.62 E-value=27 Score=27.35 Aligned_cols=65 Identities=11% Similarity=0.035 Sum_probs=40.4
Q ss_pred CcEEEEecCCCccc-hHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 30 ERVLIFVAERDYLC-PAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 30 PP~lv~~g~~D~L~-d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
.|++|++++.|-.. +.-..+++.|.+.| ..|-...++|. |...-.+...........+++++...
T Consensus 194 ~P~Vli~gG~~~~~~~~~~~~~~~La~~G--y~vl~~D~pG~--G~s~~~~~~~d~~~~~~avld~l~~~ 259 (414)
T PRK05077 194 FPTVLVCGGLDSLQTDYYRLFRDYLAPRG--IAMLTIDMPSV--GFSSKWKLTQDSSLLHQAVLNALPNV 259 (414)
T ss_pred ccEEEEeCCcccchhhhHHHHHHHHHhCC--CEEEEECCCCC--CCCCCCCccccHHHHHHHHHHHHHhC
Confidence 38999999998764 33456788999999 66776677764 43321111222333345677777654
No 119
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=68.22 E-value=0.76 Score=32.57 Aligned_cols=45 Identities=16% Similarity=0.130 Sum_probs=34.4
Q ss_pred CcEEEEecCCCc------------cchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeec
Q 043546 30 ERVLIFVAERDY------------LCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLR 77 (110)
Q Consensus 30 PP~lv~~g~~D~------------L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~ 77 (110)
.++++.+|+.|. .......+.+.|+..| +++.+++++| .|.+...
T Consensus 184 ~~i~l~~G~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~g--~~~~~~~~~G-~H~~~~W 240 (251)
T PF00756_consen 184 LRIYLDVGTKDEFGGWEDSAQILQFLANNRELAQLLKAKG--IPHTYHVFPG-GHDWAYW 240 (251)
T ss_dssp EEEEEEEETTSTTHHCSHHHHHHHHHHHHHHHHHHCCCEE--CTTESEEEHS-ESSHHHH
T ss_pred CeEEEEeCCCCcccccccCHHHHHHHHHhHhhHHHHHHcC--CCceEEEecC-ccchhhH
Confidence 378999999997 2345667777788889 8899999994 6766543
No 120
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=67.90 E-value=21 Score=27.91 Aligned_cols=58 Identities=22% Similarity=0.246 Sum_probs=38.5
Q ss_pred CcEEEEecCCCccc-hHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHH
Q 043546 30 ERVLIFVAERDYLC-PAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIK 96 (110)
Q Consensus 30 PP~lv~~g~~D~L~-d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~ 96 (110)
-|++++.|++|-+= .-|++..+.|.. ..|+.++.+|++|=.+.- .-+.+.+.+..+++
T Consensus 304 ~pv~fiyG~~dWmD~~~g~~~~~~~~~----~~~~~~~v~~aGHhvylD-----np~~Fn~~v~~~~~ 362 (365)
T KOG4409|consen 304 VPVTFIYGDRDWMDKNAGLEVTKSLMK----EYVEIIIVPGAGHHVYLD-----NPEFFNQIVLEECD 362 (365)
T ss_pred CCEEEEecCcccccchhHHHHHHHhhc----ccceEEEecCCCceeecC-----CHHHHHHHHHHHHh
Confidence 39999999999874 445555555522 459999999999933322 23455566666654
No 121
>PF12122 DUF3582: Protein of unknown function (DUF3582); InterPro: IPR022732 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the N-terminal domain of membrane-bound serine endopeptidases belonging to MEROPS peptidase family S54 (rhomboid-1, clan ST). This domain contains a conserved ASW sequence motif and a single completely conserved residue F that may be functionally important. The tertiary structure of the GlpG protein from Escherichia coli has been determined []. The GlpG protein has six transmembrane domains (other members of the family are predicted to have seven), with the N- and C-terminal ends anchored in the cytoplasm. One transmembrane domain is shorter than the rest, creating an internal, aqueous cavity just below the membrane surface and it is here were proteolysis occurs. There is also a membrane-embedded loop between the first and second transmembrane domains which is postulated to act as a gate controlling substrate access to the active site. No other family of serine peptidases is known to have active site residues within transmembrane domains (although transmembrane active sites are known for aspartic peptidase and metallopeptidases), and the GlpG protein has the type structure for clan ST.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=67.07 E-value=18 Score=23.05 Aligned_cols=47 Identities=6% Similarity=0.152 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCCcccEEEEEeCCC-ceeeeecCCCcHHHHHHHHHHHHHHHh
Q 043546 46 GKNYYEELKKRGWKGRVELVEHLDE-KHVFYLRNPTCTNALELTNKFISFIKQ 97 (110)
Q Consensus 46 ~~~~a~~L~~~G~~v~v~~~~~~g~-~H~f~~~~~~~~~a~~~~~~i~~fl~~ 97 (110)
+..|.+-|+..| +++++....+. ...|.. ..+...++-.++..|++.
T Consensus 13 AqaF~DYl~sqg--I~~~i~~~~~~~~~lwl~---de~~~~~a~~el~~Fl~n 60 (101)
T PF12122_consen 13 AQAFIDYLASQG--IELQIEPEGQGQFALWLH---DEEHLEQAEQELEEFLQN 60 (101)
T ss_dssp HHHHHHHHHHTT----EEEE-SSSE--EEEES----GGGHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCC--CeEEEEECCCCceEEEEe---CHHHHHHHHHHHHHHHHC
Confidence 788999999999 88888875544 444433 334444555666677753
No 122
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=66.62 E-value=22 Score=30.32 Aligned_cols=61 Identities=18% Similarity=0.239 Sum_probs=42.6
Q ss_pred cEEEEecCCCc--cchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHh
Q 043546 31 RVLIFVAERDY--LCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQ 97 (110)
Q Consensus 31 P~lv~~g~~D~--L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~ 97 (110)
+.++++|=.|. ---..-.+...|.++| .+-++++||+.-|+.-.. +.....-.++..|+++
T Consensus 804 RLlLvHGliDENVHF~Hts~Lvs~lvkag--KpyeL~IfP~ERHsiR~~----es~~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 804 RLLLVHGLIDENVHFAHTSRLVSALVKAG--KPYELQIFPNERHSIRNP----ESGIYYEARLLHFLQE 866 (867)
T ss_pred eEEEEecccccchhhhhHHHHHHHHHhCC--CceEEEEccccccccCCC----ccchhHHHHHHHHHhh
Confidence 47888887772 2223455678899999 999999999999965321 2333444677788765
No 123
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=65.28 E-value=17 Score=28.46 Aligned_cols=64 Identities=20% Similarity=0.181 Sum_probs=44.4
Q ss_pred cccCCCCcEEEEecCCCcc--chHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHh
Q 043546 24 LARLGCERVLIFVAERDYL--CPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQ 97 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D~L--~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~ 97 (110)
|++++. |++|+.-+.|.| .++.++.++.|..+| + -..+-...+|.-.++. .......+.+||+.
T Consensus 302 l~~i~~-~~lv~gi~sD~lfp~~~~~~~~~~L~~~~--~--~~~i~S~~GHDaFL~e-----~~~~~~~i~~fL~~ 367 (368)
T COG2021 302 LARIKA-PVLVVGITSDWLFPPELQRALAEALPAAG--A--LREIDSPYGHDAFLVE-----SEAVGPLIRKFLAL 367 (368)
T ss_pred HhcCcc-CEEEEEecccccCCHHHHHHHHHhccccC--c--eEEecCCCCchhhhcc-----hhhhhHHHHHHhhc
Confidence 566664 999999999976 778999999999999 5 2233345677644432 22345677777753
No 124
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=62.33 E-value=11 Score=26.19 Aligned_cols=28 Identities=11% Similarity=0.122 Sum_probs=24.5
Q ss_pred CCcEEEEecCCCcc--chHHHHHHHHHHhc
Q 043546 29 CERVLIFVAERDYL--CPAGKNYYEELKKR 56 (110)
Q Consensus 29 ~PP~lv~~g~~D~L--~d~~~~~a~~L~~~ 56 (110)
.||++|..|+.|.. .+.++.++++|++.
T Consensus 168 ~p~~~i~hG~~D~vVp~~~~~~~~~~l~~~ 197 (212)
T TIGR01840 168 TPIMSVVHGDADYTVLPGNADEIRDAMLKV 197 (212)
T ss_pred CCeEEEEEcCCCceeCcchHHHHHHHHHHh
Confidence 47889999999964 68999999999997
No 125
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=60.55 E-value=14 Score=21.20 Aligned_cols=53 Identities=13% Similarity=0.216 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHhcCCcccEEEEE-----eCCCceeeeecCCCcHHHH-HHHHHHHHHHHhh
Q 043546 44 PAGKNYYEELKKRGWKGRVELVE-----HLDEKHVFYLRNPTCTNAL-ELTNKFISFIKQN 98 (110)
Q Consensus 44 d~~~~~a~~L~~~G~~v~v~~~~-----~~g~~H~f~~~~~~~~~a~-~~~~~i~~fl~~~ 98 (110)
+....+++.|++.| ++|+-.. .++..+...+..+...-.. +-++++.+|+.+.
T Consensus 5 ~G~~a~~~~L~~~g--~~v~~~~~~~~~l~~~~~tll~i~~~~~~~~~~~~~~l~~~v~~G 63 (70)
T PF14258_consen 5 NGTYALYQLLEEQG--VKVERWRKPYEALEADDGTLLVIGPDLRLSEPEEAEALLEWVEAG 63 (70)
T ss_pred hHHHHHHHHHHHCC--CeeEEecccHHHhCCCCCEEEEEeCCCCCCchHHHHHHHHHHHcC
Confidence 45678999999999 7776322 2344555555555433332 5567888888754
No 126
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=58.91 E-value=42 Score=25.32 Aligned_cols=64 Identities=11% Similarity=0.024 Sum_probs=40.9
Q ss_pred cEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecC----CCcHHHHHHHHHHHHHHHhh
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRN----PTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~----~~~~~a~~~~~~i~~fl~~~ 98 (110)
|++|+..++-.--|....+|+-|..+|+ ....|....|.=..-. -.+...++.+..+.+|+++.
T Consensus 31 ~tiliA~Gf~rrmdh~agLA~YL~~NGF----hViRyDsl~HvGlSsG~I~eftms~g~~sL~~V~dwl~~~ 98 (294)
T PF02273_consen 31 NTILIAPGFARRMDHFAGLAEYLSANGF----HVIRYDSLNHVGLSSGDINEFTMSIGKASLLTVIDWLATR 98 (294)
T ss_dssp -EEEEE-TT-GGGGGGHHHHHHHHTTT------EEEE---B-------------HHHHHHHHHHHHHHHHHT
T ss_pred CeEEEecchhHHHHHHHHHHHHHhhCCe----EEEeccccccccCCCCChhhcchHHhHHHHHHHHHHHHhc
Confidence 8889999999888999999999999993 5668888888543221 13456788889999999975
No 127
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=58.17 E-value=19 Score=27.15 Aligned_cols=59 Identities=15% Similarity=0.158 Sum_probs=40.3
Q ss_pred CcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHh
Q 043546 30 ERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQ 97 (110)
Q Consensus 30 PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~ 97 (110)
.|+|++||+.-+..++..++..+|-.. .+++...++++=--. .++=.++.+.+.-||+.
T Consensus 220 c~vLlvvG~~Sp~~~~vv~~ns~Ldp~----~ttllkv~dcGglV~-----eEqP~klaea~~lFlQG 278 (283)
T PF03096_consen 220 CPVLLVVGDNSPHVDDVVEMNSKLDPT----KTTLLKVADCGGLVL-----EEQPGKLAEAFKLFLQG 278 (283)
T ss_dssp S-EEEEEETTSTTHHHHHHHHHHS-CC----CEEEEEETT-TT-HH-----HH-HHHHHHHHHHHHHH
T ss_pred CCeEEEEecCCcchhhHHHHHhhcCcc----cceEEEecccCCccc-----ccCcHHHHHHHHHHHcc
Confidence 399999999999999999999999544 589999998754211 12223455666666654
No 128
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=55.94 E-value=44 Score=20.60 Aligned_cols=68 Identities=10% Similarity=0.091 Sum_probs=38.0
Q ss_pred cccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhhhC
Q 043546 24 LARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQNNG 100 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~~~ 100 (110)
+...++|-|+.++++. .++.....+.|.+.| .++-.+-+. |... .....++.++.+.+..+.|.+..+
T Consensus 27 l~~~~i~at~fv~~~~---~~~~~~~l~~l~~~G--~ei~~H~~~---H~~~-~~~~~~~~~~ei~~~~~~l~~~~g 94 (123)
T PF01522_consen 27 LKKYGIPATFFVIGSW---VERYPDQLRELAAAG--HEIGNHGWS---HPNL-STLSPEELRREIERSREILEEITG 94 (123)
T ss_dssp HHHTT--EEEEE-HHH---HHHHHHHHHHHHHTT---EEEEE-SS---SSCG-GGS-HHHHHHHHHHHHHHHHHHHS
T ss_pred HHhcccceeeeecccc---cccccccchhHHHHH--HHHHhcCCc---cccc-ccCCHHHHHHHHHHHHHHHHHHhC
Confidence 3444668889888884 677788889999999 666544433 3211 111333445555666666666543
No 129
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=54.85 E-value=62 Score=23.89 Aligned_cols=58 Identities=19% Similarity=0.154 Sum_probs=40.8
Q ss_pred cEEEEecCCC---ccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHH
Q 043546 31 RVLIFVAERD---YLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFIS 93 (110)
Q Consensus 31 P~lv~~g~~D---~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~ 93 (110)
+++++-.+-+ .+.....++++.+++.| ++|+...++|- .|... +...+.-+.++...+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~v~~~~~~~~--~~~~~-~~~~~~p~~~~~~~~ 263 (266)
T TIGR03101 203 PVHWFEVRPEEGATLSPVFSRLGEQWVQSG--VEVTVDLVPGP--AFWQT-QEIEEAPELIARTTA 263 (266)
T ss_pred ceEEEEeccccCCCCCHHHHHHHHHHHHcC--CeEeeeecCCc--hhhcc-hhhhHhHHHHHHHHh
Confidence 5555544322 57778899999999999 99999999998 66544 444555555555443
No 130
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=53.93 E-value=19 Score=25.33 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=25.1
Q ss_pred cEEEEecCCCccch--HHHHHHHHHHhcCCcccEEEEEeCCCceeee
Q 043546 31 RVLIFVAERDYLCP--AGKNYYEELKKRGWKGRVELVEHLDEKHVFY 75 (110)
Q Consensus 31 P~lv~~g~~D~L~d--~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~ 75 (110)
|||-++|+.|.+.+ +++.+++..... .++...+ .+|-++
T Consensus 163 PtlHv~G~~D~~~~~~~s~~L~~~~~~~-----~~v~~h~-gGH~vP 203 (212)
T PF03959_consen 163 PTLHVIGENDPVVPPERSEALAEMFDPD-----ARVIEHD-GGHHVP 203 (212)
T ss_dssp EEEEEEETT-SSS-HHHHHHHHHHHHHH-----EEEEEES-SSSS--
T ss_pred CeEEEEeCCCCCcchHHHHHHHHhccCC-----cEEEEEC-CCCcCc
Confidence 99999999999988 677777766542 4555555 455454
No 131
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=52.01 E-value=98 Score=26.38 Aligned_cols=68 Identities=15% Similarity=0.069 Sum_probs=44.8
Q ss_pred CCcEEEEecCCCc--cchHHHHHHHHHHhcC-----CcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhhh
Q 043546 29 CERVLIFVAERDY--LCPAGKNYYEELKKRG-----WKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQNN 99 (110)
Q Consensus 29 ~PP~lv~~g~~D~--L~d~~~~~a~~L~~~G-----~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~~ 99 (110)
.|-+||.++.+|. -.-++..+.++||++- ..-+|-+.+..+++|+-- .+.....++ .....+||.+..
T Consensus 632 YPS~lvtta~hD~RV~~~~~~K~vAklre~~~~~~~q~~pvll~i~~~agH~~~--~~~~k~~~E-~a~~yaFl~K~~ 706 (712)
T KOG2237|consen 632 YPSMLVTTADHDDRVGPLESLKWVAKLREATCDSLKQTNPVLLRIETKAGHGAE--KPRFKQIEE-AAFRYAFLAKML 706 (712)
T ss_pred CcceEEeeccCCCcccccchHHHHHHHHHHhhcchhcCCCEEEEEecCCccccC--CchHHHHHH-HHHHHHHHHHHh
Confidence 4999999999983 3556889999999852 002588999999999643 233222222 233456666653
No 132
>PF08774 VRR_NUC: VRR-NUC domain; InterPro: IPR014883 This entry contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI: (P40815 from SWISSPROT).; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=51.88 E-value=28 Score=21.37 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=21.7
Q ss_pred CCccchHHHHHHHHHHhcCCcccEEEE
Q 043546 39 RDYLCPAGKNYYEELKKRGWKGRVELV 65 (110)
Q Consensus 39 ~D~L~d~~~~~a~~L~~~G~~v~v~~~ 65 (110)
.|.|.++...+.+.|++.| ..|.+.
T Consensus 72 ~~~ls~~Q~~~~~~l~~~G--~~v~V~ 96 (100)
T PF08774_consen 72 GDRLSPNQKEWIDKLREAG--FRVAVC 96 (100)
T ss_pred CCCcCHHHHHHHHHHHHCC--CEEEEE
Confidence 4889999999999999999 777654
No 133
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=51.76 E-value=28 Score=26.39 Aligned_cols=40 Identities=18% Similarity=0.090 Sum_probs=30.7
Q ss_pred cEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCce
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKH 72 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H 72 (110)
+.-|++.|-.|....++.+++.|.+.| ++|++..-..+.+
T Consensus 152 ~~~V~v~EsrP~~~G~~~~a~~L~~~g--I~vtlI~Dsa~~~ 191 (303)
T TIGR00524 152 RIRVIACETRPRNQGSRLTAWELMQDG--IDVTLITDSMAAY 191 (303)
T ss_pred ceEEEECCCCCccchHHHHHHHHHHCC--CCEEEEChhHHHH
Confidence 345677888898765599999999999 9999885544443
No 134
>cd06169 BMC Bacterial Micro-Compartment (BMC) domain. Bacterial micro-compartments are primitive protein-based organelles that sequester specific metabolic pathways in bacterial cells. The prototypical bacterial microcompartment is the carboxysome shell, a bacterial polyhedral organelle which increase the efficiency of CO2 fixation by encapsulating RuBisCO and carbonic anhydrase. They can be divided into two types: alpha-type carboxysomes (alpha-cyanobacteria and proteobacteria) and beta-type carboxysomes (beta-cyanobacteria). In addition to these proteins there are several homologous shell proteins including those found in pdu organelles involved in coenzyme B12-dependent degradation of 1,2-propanediol and eut organelles involved in the cobalamin-dependent degradation of ethanolamine. Structure evidence shows that several carboxysome shell proteins and their homologs (Csos1A, CcmK1,2,4, and PduU) exist as hexamers which might further assemble into extended, tightly packed layers hypo
Probab=51.51 E-value=44 Score=18.94 Aligned_cols=41 Identities=7% Similarity=-0.053 Sum_probs=25.2
Q ss_pred HHHHhcCCcccEEEEEeCC-CceeeeecCCCcHHHHHHHHHHHH
Q 043546 51 EELKKRGWKGRVELVEHLD-EKHVFYLRNPTCTNALELTNKFIS 93 (110)
Q Consensus 51 ~~L~~~G~~v~v~~~~~~g-~~H~f~~~~~~~~~a~~~~~~i~~ 93 (110)
..+|++. |++......+ ..++...+.....+-+.+++...+
T Consensus 19 ~a~KaA~--V~l~~~~~~~~~g~~~~~i~G~~s~V~~A~~a~~~ 60 (62)
T cd06169 19 AAVKAAD--VELVGIERAGGGGLVTLIIRGDVSAVKAAVEAAEQ 60 (62)
T ss_pred HHhhhcC--eEEEEEEecCCCcEEEEEEEECHHHHHHHHHHHHh
Confidence 4455555 5554444444 678887777766666666666544
No 135
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=51.31 E-value=96 Score=25.03 Aligned_cols=72 Identities=22% Similarity=0.337 Sum_probs=40.7
Q ss_pred CcccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHH----HHHHHHHHhh
Q 043546 23 DLARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELT----NKFISFIKQN 98 (110)
Q Consensus 23 ~l~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~----~~i~~fl~~~ 98 (110)
||+.+.| |++.++|+.|-+..-.--|.-+ +..| .+++++..+ .+|--....+-....++.. .++.+|+.+.
T Consensus 325 dL~~It~-pvy~~a~~~DhI~P~~Sv~~g~-~l~~--g~~~f~l~~-sGHIa~vVN~p~~~k~~~w~n~~~~~~~Wl~~a 399 (445)
T COG3243 325 DLGDITC-PVYNLAAEEDHIAPWSSVYLGA-RLLG--GEVTFVLSR-SGHIAGVVNPPGNAKYQYWTNLPADAEAWLSGA 399 (445)
T ss_pred chhhccc-ceEEEeecccccCCHHHHHHHH-HhcC--CceEEEEec-CceEEEEeCCcchhhhhcCCCCcchHHHHHHhh
Confidence 5666776 9999999999764433333322 2355 567776665 5664344432222222222 3666777655
Q ss_pred h
Q 043546 99 N 99 (110)
Q Consensus 99 ~ 99 (110)
.
T Consensus 400 ~ 400 (445)
T COG3243 400 K 400 (445)
T ss_pred c
Confidence 3
No 136
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=49.65 E-value=34 Score=25.38 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=27.7
Q ss_pred EEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCce
Q 043546 33 LIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKH 72 (110)
Q Consensus 33 lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H 72 (110)
-|++.|--|.. +|..++++|.+.| ++|++..-..+.+
T Consensus 111 ~V~v~ESrP~~-eG~~~a~~L~~~G--I~vtli~Dsa~~~ 147 (253)
T PRK06372 111 SVYILESRPML-EGIDMAKLLVKSG--IDVVLLTDASMCE 147 (253)
T ss_pred EEEEecCCCch-HHHHHHHHHHHCC--CCEEEEehhHHHH
Confidence 46666767765 6799999999999 8998776544443
No 137
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=49.28 E-value=52 Score=19.13 Aligned_cols=48 Identities=19% Similarity=0.137 Sum_probs=31.2
Q ss_pred chHHHHHHHHHHhcCCcccEEEEEeC-----CCceeeeecCCCcHHHHHHHHHHHHHHHhhh
Q 043546 43 CPAGKNYYEELKKRGWKGRVELVEHL-----DEKHVFYLRNPTCTNALELTNKFISFIKQNN 99 (110)
Q Consensus 43 ~d~~~~~a~~L~~~G~~v~v~~~~~~-----g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~~ 99 (110)
..+++..-+.|+++| .++++.-.| |++.++-... +-.+.+.+.|++.+
T Consensus 11 t~~a~~~ek~lk~~g--i~~~liP~P~~i~~~CG~al~~~~-------~d~~~i~~~l~~~~ 63 (73)
T PF11823_consen 11 THDAMKAEKLLKKNG--IPVRLIPTPREISAGCGLALRFEP-------EDLEKIKEILEENG 63 (73)
T ss_pred HHHHHHHHHHHHHCC--CcEEEeCCChhccCCCCEEEEECh-------hhHHHHHHHHHHCC
Confidence 356788889999999 778877555 6666654432 23445555555553
No 138
>smart00877 BMC Bacterial microcompartments are primitive organelles composed entirely of protein subunits. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric structure.
Probab=48.97 E-value=55 Score=19.36 Aligned_cols=50 Identities=8% Similarity=-0.031 Sum_probs=32.2
Q ss_pred HHHHHHH-HHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHh
Q 043546 46 GKNYYEE-LKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQ 97 (110)
Q Consensus 46 ~~~~a~~-L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~ 97 (110)
+...++. +|++. |++......+.+|++..+.......+.+++...+.+.+
T Consensus 13 ~i~aaD~a~KaA~--V~l~~~~~~~~g~~~~~v~Gdvs~V~~Av~a~~~~~~~ 63 (75)
T smart00877 13 AIEAADAALKAAN--VELVGYESIGGGKVTVIITGDVAAVRAAVEAGLEAAER 63 (75)
T ss_pred HHHHHHHHhhhcC--cEEEEEEecCCCEEEEEEEEcHHHHHHHHHHHHHHHhh
Confidence 3444444 45555 55555555555787777777777778888877777644
No 139
>COG4874 Uncharacterized protein conserved in bacteria containing a pentein-type domain [Function unknown]
Probab=48.52 E-value=26 Score=26.27 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=23.1
Q ss_pred chHHHHHHHHHHhcCCcccEEEEEeCCCcee
Q 043546 43 CPAGKNYYEELKKRGWKGRVELVEHLDEKHV 73 (110)
Q Consensus 43 ~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~ 73 (110)
.++--.++++|++.| |+|.+.-+-|.+|-
T Consensus 56 ~~Ef~amve~L~~~G--vdV~ifddtg~~~T 84 (318)
T COG4874 56 MSEFNAMVEGLRQAG--VDVVIFDDTGQGET 84 (318)
T ss_pred HHHHHHHHHHHHhcC--ceEEEeecCCCCCC
Confidence 456678899999999 99988877776663
No 140
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=47.94 E-value=82 Score=26.12 Aligned_cols=53 Identities=19% Similarity=0.302 Sum_probs=39.6
Q ss_pred chHHHHHHHHHHhcCCccc----EEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHh
Q 043546 43 CPAGKNYYEELKKRGWKGR----VELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQ 97 (110)
Q Consensus 43 ~d~~~~~a~~L~~~G~~v~----v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~ 97 (110)
.+++.++.+.|++.| +. +.+.+..+..|.|..-....|+..+.++.+...+.+
T Consensus 544 ~~~A~~v~~~m~~~g--~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~ 600 (697)
T PLN03081 544 QAEAAKVVETLKRKG--LSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKE 600 (697)
T ss_pred HHHHHHHHHHHHHcC--CccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHH
Confidence 588999999999998 53 678889999999987665667766666555444443
No 141
>PLN00021 chlorophyllase
Probab=47.27 E-value=93 Score=23.46 Aligned_cols=42 Identities=19% Similarity=0.063 Sum_probs=29.6
Q ss_pred CcEEEEecCCCcc---------chHHHHHHHHHHhcCCcccEEEEEeCCCcee
Q 043546 30 ERVLIFVAERDYL---------CPAGKNYYEELKKRGWKGRVELVEHLDEKHV 73 (110)
Q Consensus 30 PP~lv~~g~~D~L---------~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~ 73 (110)
-|++|+.++.|.+ ...+....+-..+.. .+..+.+.+|.+|.
T Consensus 190 ~P~liig~g~~~~~~~~~~p~~ap~~~~~~~f~~~~~--~~~~~~~~~~~gH~ 240 (313)
T PLN00021 190 IPVLVIGTGLGGEPRNPLFPPCAPDGVNHAEFFNECK--APAVHFVAKDYGHM 240 (313)
T ss_pred CCeEEEecCCCcccccccccccCCCCCCHHHHHHhcC--CCeeeeeecCCCcc
Confidence 3899999987641 224445555556666 77899999999994
No 142
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=47.17 E-value=91 Score=21.36 Aligned_cols=41 Identities=20% Similarity=0.162 Sum_probs=26.6
Q ss_pred CcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCce
Q 043546 30 ERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKH 72 (110)
Q Consensus 30 PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H 72 (110)
||++++.|...--.+.-..+...|++.| ..|-....+|.++
T Consensus 26 ~~vl~~hG~~g~~~~~~~~~~~~l~~~g--~~vi~~d~~G~G~ 66 (288)
T TIGR01250 26 IKLLLLHGGPGMSHEYLENLRELLKEEG--REVIMYDQLGCGY 66 (288)
T ss_pred CeEEEEcCCCCccHHHHHHHHHHHHhcC--CEEEEEcCCCCCC
Confidence 6888888864433333445667777778 6677777776554
No 143
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=46.80 E-value=27 Score=28.14 Aligned_cols=30 Identities=17% Similarity=0.111 Sum_probs=24.6
Q ss_pred chHHHHHHHHHHhcCCcccEEEEEeCCCceeeeec
Q 043546 43 CPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLR 77 (110)
Q Consensus 43 ~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~ 77 (110)
.++...++++|.++| ++|. .|..+|++++-
T Consensus 322 i~~~~~l~~~L~~~G--vpv~---~p~ggH~v~vd 351 (460)
T PRK13237 322 VGQVRYLGEKLLAAG--VPIV---EPVGGHAVFLD 351 (460)
T ss_pred HHHHHHHHHHHHHCC--Ccee---cCCCceEEEEE
Confidence 457788999999999 8876 48888998773
No 144
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=46.51 E-value=40 Score=25.91 Aligned_cols=63 Identities=21% Similarity=0.248 Sum_probs=45.8
Q ss_pred cCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 26 RLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 26 ~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
.|++ |+|+++|..-+..++..++..+|...- +++....+++-.-....| .++.+.+.-|++..
T Consensus 244 tlkc-~vllvvGd~Sp~~~~vv~~n~~Ldp~~----ttllk~~d~g~l~~e~qP-----~kl~ea~~~FlqG~ 306 (326)
T KOG2931|consen 244 TLKC-PVLLVVGDNSPHVSAVVECNSKLDPTY----TTLLKMADCGGLVQEEQP-----GKLAEAFKYFLQGM 306 (326)
T ss_pred cccc-cEEEEecCCCchhhhhhhhhcccCccc----ceEEEEcccCCcccccCc-----hHHHHHHHHHHccC
Confidence 3455 999999999999999999999997665 788888877763332222 24556666676654
No 145
>PLN03077 Protein ECB2; Provisional
Probab=45.59 E-value=73 Score=27.09 Aligned_cols=54 Identities=13% Similarity=0.172 Sum_probs=40.7
Q ss_pred chHHHHHHHHHHhcCCccc----EEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 43 CPAGKNYYEELKKRGWKGR----VELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 43 ~d~~~~~a~~L~~~G~~v~----v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
-+++...-+.|++.| +. +.+++..|..|.|..-....|+.++++..+.....+.
T Consensus 707 ~~~a~~vr~~M~~~g--~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~ 764 (857)
T PLN03077 707 WDEVARVRKTMRENG--LTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKM 764 (857)
T ss_pred hHHHHHHHHHHHHcC--CCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHH
Confidence 567888889999998 43 5788999999999877667777777766555444443
No 146
>COG3150 Predicted esterase [General function prediction only]
Probab=45.32 E-value=28 Score=24.67 Aligned_cols=54 Identities=13% Similarity=0.125 Sum_probs=33.1
Q ss_pred CCcEEEEecCC-CccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHH
Q 043546 29 CERVLIFVAER-DYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIK 96 (110)
Q Consensus 29 ~PP~lv~~g~~-D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~ 96 (110)
-|..+++.... |.. ..|-+....- .++...+++|..|+|.-+. +-+++|..|..
T Consensus 133 ~p~~~~lL~qtgDEv----LDyr~a~a~y---~~~~~~V~dgg~H~F~~f~-------~~l~~i~aF~g 187 (191)
T COG3150 133 RPRCLVLLSQTGDEV----LDYRQAVAYY---HPCYEIVWDGGDHKFKGFS-------RHLQRIKAFKG 187 (191)
T ss_pred CCcEEEeecccccHH----HHHHHHHHHh---hhhhheeecCCCccccchH-------HhHHHHHHHhc
Confidence 35666555544 443 3444444333 3567789999999998765 34666777753
No 147
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=45.24 E-value=82 Score=20.28 Aligned_cols=34 Identities=12% Similarity=0.284 Sum_probs=21.6
Q ss_pred EEEEecCCCccc--------hHHHHHHHHHHhcCCcccEEEEEe
Q 043546 32 VLIFVAERDYLC--------PAGKNYYEELKKRGWKGRVELVEH 67 (110)
Q Consensus 32 ~lv~~g~~D~L~--------d~~~~~a~~L~~~G~~v~v~~~~~ 67 (110)
++|..|.+|... ++-.++.+++++.+ .++.+...
T Consensus 44 vvi~~G~ND~~~~~~~~~~~~~~~~~i~~i~~~~--p~~~ii~~ 85 (157)
T cd01833 44 VLLHLGTNDLVLNRDPDTAPDRLRALIDQMRAAN--PDVKIIVA 85 (157)
T ss_pred EEEeccCcccccCCCHHHHHHHHHHHHHHHHHhC--CCeEEEEE
Confidence 567789999875 34455666666665 45555543
No 148
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=45.18 E-value=1e+02 Score=23.01 Aligned_cols=65 Identities=9% Similarity=-0.100 Sum_probs=36.6
Q ss_pred CcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecC-CCcHHHHHHHHHHHHHHHhh
Q 043546 30 ERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRN-PTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 30 PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~-~~~~~a~~~~~~i~~fl~~~ 98 (110)
|++++++|-.+.-...-..+++.|.+.| -.|-..-++| ||...-. ...+.-....+++.+++...
T Consensus 88 ~~iv~lHG~~~~~~~~~~~~~~~l~~~g--~~v~~~D~~G--~G~S~~~~~~~~~~~~~~~dv~~~l~~l 153 (349)
T PLN02385 88 AAVCFCHGYGDTCTFFFEGIARKIASSG--YGVFAMDYPG--FGLSEGLHGYIPSFDDLVDDVIEHYSKI 153 (349)
T ss_pred eEEEEECCCCCccchHHHHHHHHHHhCC--CEEEEecCCC--CCCCCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 4566777755533222356788898889 6677777776 5543211 11122345566666666543
No 149
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=43.97 E-value=29 Score=20.94 Aligned_cols=28 Identities=29% Similarity=0.260 Sum_probs=21.3
Q ss_pred EEEEecCCCccchHHHHHHHHHHhcCCcccEE
Q 043546 32 VLIFVAERDYLCPAGKNYYEELKKRGWKGRVE 63 (110)
Q Consensus 32 ~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~ 63 (110)
++|..+..| ++.+..+++.|++.| .+|-
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g--~~v~ 28 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAG--IRVF 28 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT----EE
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcC--CEEE
Confidence 367778878 678999999999999 6544
No 150
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=43.53 E-value=1.2e+02 Score=25.22 Aligned_cols=58 Identities=19% Similarity=0.288 Sum_probs=42.7
Q ss_pred CCC-CCcCcccCCCCcEEEEecCCCccchHHHH---------HHHHHHhcCCcccEEEEEeCCCceeeeec
Q 043546 17 MKP-PAEDLARLGCERVLIFVAERDYLCPAGKN---------YYEELKKRGWKGRVELVEHLDEKHVFYLR 77 (110)
Q Consensus 17 ~sP-~~~~l~~l~~PP~lv~~g~~D~L~d~~~~---------~a~~L~~~G~~v~v~~~~~~g~~H~f~~~ 77 (110)
++. ..-||+++.+ |++|.++..|-+..-... =.+.++++| ..+.+.+.+..+|-=..+
T Consensus 285 ~~~G~~~DLr~Ir~-Piivfas~gDnITPP~QaL~WI~dlY~~~~ei~a~g--Q~IVY~~h~~vGHLGIFV 352 (581)
T PF11339_consen 285 VSDGRRVDLRNIRS-PIIVFASYGDNITPPQQALNWIPDLYPDTEEIKAAG--QTIVYLLHESVGHLGIFV 352 (581)
T ss_pred ccCCcEeehhhCCC-CEEEEeccCCCCCChhHhccchHhhcCCHHHHHhCC--CEEEEEecCCCCceEEEe
Confidence 444 3347888875 999999999976544443 247889999 889999999999954333
No 151
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=43.44 E-value=64 Score=24.49 Aligned_cols=57 Identities=26% Similarity=0.363 Sum_probs=37.4
Q ss_pred CcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHH-HHHHHHHHHhh
Q 043546 30 ERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALEL-TNKFISFIKQN 98 (110)
Q Consensus 30 PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~-~~~i~~fl~~~ 98 (110)
.|+++.+|=.|..+.-.-.||--= ... .+-++.+|+...|... + +. .++..+||+++
T Consensus 263 ~pvl~~~gl~D~~cPP~t~fA~yN-~i~--~~K~l~vyp~~~He~~------~---~~~~~~~~~~l~~~ 320 (320)
T PF05448_consen 263 CPVLFSVGLQDPVCPPSTQFAAYN-AIP--GPKELVVYPEYGHEYG------P---EFQEDKQLNFLKEH 320 (320)
T ss_dssp SEEEEEEETT-SSS-HHHHHHHHC-C----SSEEEEEETT--SSTT------H---HHHHHHHHHHHHH-
T ss_pred CCEEEEEecCCCCCCchhHHHHHh-ccC--CCeeEEeccCcCCCch------h---hHHHHHHHHHHhcC
Confidence 399999999999988887777542 223 4689999999999532 1 22 56778888764
No 152
>KOG4584 consensus Uncharacterized conserved protein [General function prediction only]
Probab=42.92 E-value=25 Score=27.05 Aligned_cols=47 Identities=15% Similarity=0.110 Sum_probs=40.5
Q ss_pred CcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecC
Q 043546 30 ERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRN 78 (110)
Q Consensus 30 PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~ 78 (110)
-+.+++..++|.-+=|-.+..+.|..+- .+..+++.+||+-+++...
T Consensus 270 ~~ll~~~~G~~~pciDlrrvsqeLa~l~--~daDLVViEGMGRalhTN~ 316 (348)
T KOG4584|consen 270 GQLLVVQNGQDSPCIDLRRVSQELAYLS--SDADLVVIEGMGRALHTNL 316 (348)
T ss_pred cceEEeecCCCCceeeHHhhhHHHHHHh--cCCCEEEEeccchhhhhhh
Confidence 5889999999987777888889998887 7899999999999987653
No 153
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=42.65 E-value=31 Score=20.55 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=20.0
Q ss_pred ccchHHHHHHHHHHhcCCcccEEEEE
Q 043546 41 YLCPAGKNYYEELKKRGWKGRVELVE 66 (110)
Q Consensus 41 ~L~d~~~~~a~~L~~~G~~v~v~~~~ 66 (110)
-+.+-+..++++|+++| ..|++..
T Consensus 13 ~~~~~a~~l~~~L~~~g--i~v~~d~ 36 (94)
T PF03129_consen 13 EIIEYAQELANKLRKAG--IRVELDD 36 (94)
T ss_dssp HHHHHHHHHHHHHHHTT--SEEEEES
T ss_pred HHHHHHHHHHHHHHHCC--CEEEEEC
Confidence 57788999999999999 7777654
No 154
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=42.63 E-value=50 Score=22.65 Aligned_cols=58 Identities=19% Similarity=0.283 Sum_probs=35.8
Q ss_pred cEEEEecCCCccchHH-HHHHHHHHhc-CCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHH
Q 043546 31 RVLIFVAERDYLCPAG-KNYYEELKKR-GWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFI 95 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~-~~~a~~L~~~-G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl 95 (110)
|..+.....|++.... ....++.++. + ..++++..+| .| |.++. +...++.+.|.++|
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~W~~~~~--~~~~~~~v~G-~H-~~~l~---~~~~~i~~~I~~~~ 229 (229)
T PF00975_consen 170 PITLFYALDDPLVSMDRLEEADRWWDYTS--GDVEVHDVPG-DH-FSMLK---PHVAEIAEKIAEWL 229 (229)
T ss_dssp EEEEEEECSSSSSSHHCGGHHCHHHGCBS--SSEEEEEESS-ET-TGHHS---TTHHHHHHHHHHHH
T ss_pred cEEEEecCCCccccchhhhhHHHHHHhcC--CCcEEEEEcC-CC-cEecc---hHHHHHHHHHhccC
Confidence 6788888889887555 2344546664 3 5688888877 89 44443 33455555555543
No 155
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=41.66 E-value=68 Score=18.87 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=19.6
Q ss_pred ccchHHHHHHHHHHhcCCcccEEEEE
Q 043546 41 YLCPAGKNYYEELKKRGWKGRVELVE 66 (110)
Q Consensus 41 ~L~d~~~~~a~~L~~~G~~v~v~~~~ 66 (110)
...+.+..+++.|+++| ..|++..
T Consensus 15 ~~~~~a~~la~~Lr~~g--~~v~~d~ 38 (94)
T cd00861 15 VQQELAEKLYAELQAAG--VDVLLDD 38 (94)
T ss_pred HHHHHHHHHHHHHHHCC--CEEEEEC
Confidence 56678999999999999 7787643
No 156
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=41.39 E-value=53 Score=23.69 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=23.5
Q ss_pred EEEEecCCCc------cchHHHHHHHHHHhcCCcccEEEE
Q 043546 32 VLIFVAERDY------LCPAGKNYYEELKKRGWKGRVELV 65 (110)
Q Consensus 32 ~lv~~g~~D~------L~d~~~~~a~~L~~~G~~v~v~~~ 65 (110)
+|+++.|..| |-|=...+++.|++.| .+|.+.
T Consensus 2 Il~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G--~~V~Vi 39 (245)
T PF08323_consen 2 ILMVTSEYAPFAKVGGLGDVVGSLPKALAKQG--HDVRVI 39 (245)
T ss_dssp EEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT---EEEEE
T ss_pred EEEEEcccCcccccCcHhHHHHHHHHHHHhcC--CeEEEE
Confidence 5777788887 6788899999999999 777654
No 157
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=40.87 E-value=1.2e+02 Score=22.96 Aligned_cols=65 Identities=14% Similarity=0.113 Sum_probs=36.1
Q ss_pred cccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHH
Q 043546 24 LARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISF 94 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~f 94 (110)
...+.+ |.+..+|+.|.-.++.. ..+.+...+- ..+++...+|..|.. ....--++.+++.+.+-
T Consensus 191 ~k~l~i-P~iaF~A~~D~WV~q~e-V~~~~~~~~s-~~~klysl~Gs~HdL---~enl~vlrnfy~svtka 255 (294)
T PF02273_consen 191 MKRLSI-PFIAFTANDDDWVKQSE-VEELLDNINS-NKCKLYSLPGSSHDL---GENLVVLRNFYQSVTKA 255 (294)
T ss_dssp HTT--S--EEEEEETT-TTS-HHH-HHHHHTT-TT---EEEEEETT-SS-T---TSSHHHHHHHHHHHHHH
T ss_pred HhhCCC-CEEEEEeCCCccccHHH-HHHHHHhcCC-CceeEEEecCccchh---hhChHHHHHHHHHHHHH
Confidence 334544 99999999998776543 3444443332 478999999999943 23445566666666543
No 158
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=40.71 E-value=39 Score=24.74 Aligned_cols=39 Identities=21% Similarity=0.189 Sum_probs=25.8
Q ss_pred cEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCce
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKH 72 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H 72 (110)
..-|++-|..|.. +|+.+++.|.+.| ++|++..-..+.+
T Consensus 133 ~~~V~v~es~P~~-eG~~~a~~L~~~g--i~v~~i~d~~~~~ 171 (282)
T PF01008_consen 133 KFRVIVLESRPYN-EGRLMAKELAEAG--IPVTLIPDSAVGY 171 (282)
T ss_dssp EEEEEEE--TTTT-HHHTHHHHHHHTT---EEEEE-GGGHHH
T ss_pred eEEEEEccCCcch-hhhhHHHHhhhcc--eeEEEEechHHHH
Confidence 3446667777744 5799999999999 8888876655444
No 159
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=40.41 E-value=65 Score=17.70 Aligned_cols=22 Identities=14% Similarity=0.090 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHhcCCcccEEEEEe
Q 043546 44 PAGKNYYEELKKRGWKGRVELVEH 67 (110)
Q Consensus 44 d~~~~~a~~L~~~G~~v~v~~~~~ 67 (110)
+-+..++..|+.+| +++.+...
T Consensus 11 ~~a~l~~~llr~~G--Ipar~v~g 32 (68)
T smart00460 11 EFAALFVALLRSLG--IPARVVSG 32 (68)
T ss_pred HHHHHHHHHHHHCC--CCeEEEee
Confidence 44677888999999 88888755
No 160
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=40.37 E-value=7.5 Score=28.31 Aligned_cols=30 Identities=10% Similarity=0.170 Sum_probs=23.7
Q ss_pred CCceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 69 DEKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 69 g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
+..+||..+...+..+.....++.+|+++.
T Consensus 2 ~~~~Gf~vl~~~~k~g~~~~~el~~fl~ER 31 (233)
T cd07649 2 TTVTGFEILLQKQLKGKQMQKEMAEFIRER 31 (233)
T ss_pred CCCccHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 456778777667778889999999999864
No 161
>TIGR02867 spore_II_P stage II sporulation protein P. Stage II sporulation protein P is a protein of the endospore formation program in a number of lineages in the Firmicutes (low-GC Gram-positive bacteria). It is expressed in the mother cell compartment, under control of Sigma-E. SpoIIP, along with SpoIIM and SpoIID, is one of three major proteins involved in engulfment of the forespore by the mother cell. This protein family is named for the single member in Bacillus subtilis, although most sporulating bacteria have two members.
Probab=40.33 E-value=1.2e+02 Score=21.58 Aligned_cols=28 Identities=7% Similarity=0.145 Sum_probs=24.0
Q ss_pred CcEEEEecCCCccchHHHHHHHHHHhcC
Q 043546 30 ERVLIFVAERDYLCPAGKNYYEELKKRG 57 (110)
Q Consensus 30 PP~lv~~g~~D~L~d~~~~~a~~L~~~G 57 (110)
.++++++|...+-..+..+||++|.+.-
T Consensus 109 Aki~fVvG~~np~~~~N~~fA~~l~~~~ 136 (196)
T TIGR02867 109 AKVMFVIGKNNPHFEKNLQLANKLHAKL 136 (196)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 4778888888888899999999999864
No 162
>PF13362 Toprim_3: Toprim domain
Probab=40.20 E-value=84 Score=18.92 Aligned_cols=35 Identities=31% Similarity=0.343 Sum_probs=26.9
Q ss_pred cEEEEecCCCcc---chHHHHHHHHHHhcCCcccEEEEEe
Q 043546 31 RVLIFVAERDYL---CPAGKNYYEELKKRGWKGRVELVEH 67 (110)
Q Consensus 31 P~lv~~g~~D~L---~d~~~~~a~~L~~~G~~v~v~~~~~ 67 (110)
+-+++.+.+|.- +.-+...+++|++.| ..+.+..-
T Consensus 42 ~~vii~~D~D~~~~G~~~a~~~~~~~~~~g--~~~~~~~p 79 (96)
T PF13362_consen 42 RRVIIAADNDKANEGQKAAEKAAERLEAAG--IAVSIVEP 79 (96)
T ss_pred CeEEEEECCCCchhhHHHHHHHHHHHHhCC--CeEEEECC
Confidence 556899999976 667778888889999 66665544
No 163
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=40.15 E-value=51 Score=24.85 Aligned_cols=39 Identities=18% Similarity=0.142 Sum_probs=29.9
Q ss_pred cEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCce
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKH 72 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H 72 (110)
+.-|++.|.-|.. +|+.+++.|.+.| ++|++..-..+.+
T Consensus 141 ~f~V~v~EsrP~~-~G~~~a~~L~~~g--I~vtlI~Dsa~~~ 179 (301)
T TIGR00511 141 DIEVIATETRPRK-QGHITAKELRDYG--IPVTLIVDSAVRY 179 (301)
T ss_pred cEEEEEecCCCcc-hHHHHHHHHHHCC--CCEEEEehhHHHH
Confidence 3456677877865 6699999999999 9999876555444
No 164
>PF07775 PaRep2b: PaRep2b protein; InterPro: IPR011689 This is a group of proteins, expressed in the crenarchaeon Pyrobaculum aerophilum, whose members are variable in length and level of conservation. The presence of numerous frameshifts and internal stop codons in multiple alignments are thought to indicate that most family members are no longer functional [].
Probab=40.14 E-value=1.1e+02 Score=25.07 Aligned_cols=54 Identities=13% Similarity=0.115 Sum_probs=39.9
Q ss_pred chHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcH-HHHHHHHHHHHHHHhh
Q 043546 43 CPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCT-NALELTNKFISFIKQN 98 (110)
Q Consensus 43 ~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~-~a~~~~~~i~~fl~~~ 98 (110)
|..++++|.-|++.| +.++...+-+..+.-........ .-.++++.+..|+.+.
T Consensus 116 RE~AErlAsILrAlG--~~aEvk~~g~~W~V~l~Td~IaAirh~ewl~AV~~fVeel 170 (512)
T PF07775_consen 116 REKAERLASILRALG--AEAEVKKYGGEWRVVLTTDSIAAIRHPEWLEAVRAFVEEL 170 (512)
T ss_pred HHHHHHHHHHHHhcC--CeeEEEEcCCeEEEEEEeCcchhcccHHHHHHHHHHHHHH
Confidence 889999999999999 99999999888886655443222 1245556666776654
No 165
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=39.88 E-value=1.1e+02 Score=20.30 Aligned_cols=44 Identities=20% Similarity=0.281 Sum_probs=26.4
Q ss_pred HHHHHHHhcCCcccEEEEEe---CCCceeeeecCCCcHHHHHHHHHHHHHHH
Q 043546 48 NYYEELKKRGWKGRVELVEH---LDEKHVFYLRNPTCTNALELTNKFISFIK 96 (110)
Q Consensus 48 ~~a~~L~~~G~~v~v~~~~~---~g~~H~f~~~~~~~~~a~~~~~~i~~fl~ 96 (110)
.|.+.|.+.| |.++.... +.+. ....+.+++.++.++.+++-+.
T Consensus 50 ~~~~~l~k~G--V~~~~~~~g~~K~~~---~~~~~~s~~~r~~~~~~l~~~~ 96 (154)
T PF01343_consen 50 FFKGLLEKLG--VKVEVVRSGEYKSAG---FPRDPMSEEERENLQELLDELY 96 (154)
T ss_dssp E-HHHHHHTT---EEEEEESSTTCCCC---CTTSS--HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHCC--CeEEEEecCcccccc---CcCCCCCHHHHHHHHHHHHHHH
Confidence 4668889999 77776653 3333 3445688888888877764443
No 166
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=39.87 E-value=1.6e+02 Score=21.98 Aligned_cols=60 Identities=13% Similarity=0.158 Sum_probs=34.9
Q ss_pred cEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
|++|++.+.-.....=..+.+++...|+ +-|-...|. +........-+.+.++++|+.+.
T Consensus 18 PVv~f~~G~~~~~s~Ys~ll~hvAShGy-IVV~~d~~~-------~~~~~~~~~~~~~~~vi~Wl~~~ 77 (259)
T PF12740_consen 18 PVVLFLHGFLLINSWYSQLLEHVASHGY-IVVAPDLYS-------IGGPDDTDEVASAAEVIDWLAKG 77 (259)
T ss_pred CEEEEeCCcCCCHHHHHHHHHHHHhCce-EEEEecccc-------cCCCCcchhHHHHHHHHHHHHhc
Confidence 7788888877555555566667777784 334444333 11122222334567788898774
No 167
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=39.52 E-value=39 Score=22.80 Aligned_cols=33 Identities=33% Similarity=0.443 Sum_probs=26.4
Q ss_pred EEEEecCCCccchHHHHHHHHHHhcCCcccEEEEE
Q 043546 32 VLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVE 66 (110)
Q Consensus 32 ~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~ 66 (110)
.+-.....|+++++..+.-+.|++.| +++.+.-
T Consensus 118 ~~~~~~~~d~~~~~~~~~l~~L~~~G--i~~~i~T 150 (215)
T PF00702_consen 118 FLGLFGLRDPLRPGAKEALQELKEAG--IKVAILT 150 (215)
T ss_dssp EEEEEEEEEEBHTTHHHHHHHHHHTT--EEEEEEE
T ss_pred EEEEEeecCcchhhhhhhhhhhhccC--cceeeee
Confidence 34566677899999999999999999 6555544
No 168
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=39.24 E-value=49 Score=23.63 Aligned_cols=31 Identities=29% Similarity=0.309 Sum_probs=23.0
Q ss_pred cEEEEecCCCccc-hHHHHHHHHHHhcCCcccEEE
Q 043546 31 RVLIFVAERDYLC-PAGKNYYEELKKRGWKGRVEL 64 (110)
Q Consensus 31 P~lv~~g~~D~L~-d~~~~~a~~L~~~G~~v~v~~ 64 (110)
..++++|| ||+. ++..++.++|++.| .++.+
T Consensus 73 ~~V~lTGG-EP~~~~~l~~Ll~~l~~~g--~~~~l 104 (212)
T COG0602 73 RGVSLTGG-EPLLQPNLLELLELLKRLG--FRIAL 104 (212)
T ss_pred ceEEEeCC-cCCCcccHHHHHHHHHhCC--ceEEe
Confidence 45566666 8876 47999999999999 54543
No 169
>cd07047 BMC_PduB_repeat1 1,2-propanediol utilization protein B (PduB), Bacterial Micro-Compartment (BMC) domain repeat 1. PduB proteins are homologs of the carboxysome shell protein. They are encoded within the pdu operon and might be required for the formation of the outer shell of the bacterial pdu polyhedral organelles involved in coenzyme B12-dependent degradation of 1,2-propanediol. Although it has been suggested that PduB might form hexamers and further assemble into the flat facets of the polyhedral outer shell of pdu organelles at present no experimental evidence directly supports this view. PduB proteins contain two tandem BMC domains repeats. This CD contains repeat 1 (the first BMC domain of PduB).
Probab=39.16 E-value=1.2e+02 Score=20.38 Aligned_cols=51 Identities=12% Similarity=-0.035 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCcccEEEEE-----eCCCceeeeecCC--CcHHHHHHHHHHHHHHHhh
Q 043546 46 GKNYYEELKKRGWKGRVELVE-----HLDEKHVFYLRNP--TCTNALELTNKFISFIKQN 98 (110)
Q Consensus 46 ~~~~a~~L~~~G~~v~v~~~~-----~~g~~H~f~~~~~--~~~~a~~~~~~i~~fl~~~ 98 (110)
-++.=+.+|++. |++-..+ |-+.+|++..+.. ...+.+..++...+.+.+.
T Consensus 49 IiAaD~A~KaA~--Veli~i~l~r~~~G~gGkg~vvitGg~dVs~V~~aVeaa~~~v~~~ 106 (134)
T cd07047 49 IMAADEAVKATN--TEVISIELPRDTKGGAGHGSLILFGAEDVSDVRRAVEVALSETEKT 106 (134)
T ss_pred HHHHHHHHhhcC--cEEEEEEccccccCCCceEEEEEEcCCCHHHHHHHHHHHHHHHHHh
Confidence 344445667777 5544332 2468899998877 7777777777777766654
No 170
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=38.91 E-value=1.1e+02 Score=23.87 Aligned_cols=83 Identities=16% Similarity=0.219 Sum_probs=37.7
Q ss_pred CCCCCC-CCcCcccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeee----ecCC---------
Q 043546 14 DPRMKP-PAEDLARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFY----LRNP--------- 79 (110)
Q Consensus 14 ~p~~sP-~~~~l~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~----~~~~--------- 79 (110)
||..-| .......+.. |+|++..+ +.-........+++.+.+ ....+....|..|.-. ++.|
T Consensus 259 D~W~~Pl~~~~~~~i~~-P~L~InSe-~f~~~~~~~~~~~~~~~~--~~~~~~ti~gt~H~s~sD~~ll~P~~l~~~~~~ 334 (379)
T PF03403_consen 259 DPWMFPLGDEIYSKIPQ-PLLFINSE-SFQWWENIFRMKKVISNN--KESRMLTIKGTAHLSFSDFPLLSPWLLGKFLGL 334 (379)
T ss_dssp S---TTS-GGGGGG--S--EEEEEET-TT--HHHHHHHHTT--TT--S-EEEEEETT--GGGGSGGGGTS-HHHHHHTTS
T ss_pred CCcccCCCcccccCCCC-CEEEEECc-ccCChhhHHHHHHHhccC--CCcEEEEECCCcCCCcchhhhhhHHHHHHHhcc
Confidence 566777 3333444543 88888766 343333333333444455 5678899999999632 2222
Q ss_pred ----CcHHH-HHHHHHHHHHHHhhhC
Q 043546 80 ----TCTNA-LELTNKFISFIKQNNG 100 (110)
Q Consensus 80 ----~~~~a-~~~~~~i~~fl~~~~~ 100 (110)
....+ +...+.+.+||+++.+
T Consensus 335 ~g~~dp~~a~~i~~~~~l~FL~~~L~ 360 (379)
T PF03403_consen 335 KGSIDPERALRINNRASLAFLRRHLG 360 (379)
T ss_dssp S-SS-HHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCcCHHHHHHHHHHHHHHHHHHhcC
Confidence 01112 2233566899999855
No 171
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=38.62 E-value=1.5e+02 Score=21.39 Aligned_cols=40 Identities=20% Similarity=0.046 Sum_probs=28.2
Q ss_pred CcEEEEecCCCccc---hHHHHHHHHHHhcCCcccEEEEEeCCCc
Q 043546 30 ERVLIFVAERDYLC---PAGKNYYEELKKRGWKGRVELVEHLDEK 71 (110)
Q Consensus 30 PP~lv~~g~~D~L~---d~~~~~a~~L~~~G~~v~v~~~~~~g~~ 71 (110)
+++++++++.+.-. .....+++.|.+.| ..|-..-++|.+
T Consensus 27 ~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G--~~v~~~Dl~G~G 69 (274)
T TIGR03100 27 TGVLIVVGGPQYRVGSHRQFVLLARRLAEAG--FPVLRFDYRGMG 69 (274)
T ss_pred CeEEEEeCCccccCCchhHHHHHHHHHHHCC--CEEEEeCCCCCC
Confidence 57888888877443 22456789999999 667777777643
No 172
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=38.31 E-value=50 Score=20.96 Aligned_cols=34 Identities=12% Similarity=0.180 Sum_probs=24.5
Q ss_pred CcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEE
Q 043546 30 ERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELV 65 (110)
Q Consensus 30 PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~ 65 (110)
+|-+|+.|.....+--..+..+.|++.| +.++..
T Consensus 52 ~peiliiGTG~~~~~~~~~~~~~l~~~g--I~vE~m 85 (109)
T cd00248 52 RPDILLIGTGAEIAFLPRALRAALRAAG--IGVEVM 85 (109)
T ss_pred CCCEEEEcCCCCCCcCCHHHHHHHHHcC--CeEEEe
Confidence 3778888887755444566779999999 667743
No 173
>PLN02955 8-amino-7-oxononanoate synthase
Probab=38.08 E-value=74 Score=25.81 Aligned_cols=27 Identities=15% Similarity=-0.074 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCCcccEEEEEeCCCcee
Q 043546 45 AGKNYYEELKKRGWKGRVELVEHLDEKHV 73 (110)
Q Consensus 45 ~~~~~a~~L~~~G~~v~v~~~~~~g~~H~ 73 (110)
.+..++++|.+.| +-|....||-.+-|
T Consensus 405 ~a~~~~~~L~~~G--i~v~~i~yPtVP~g 431 (476)
T PLN02955 405 KALKASRYLLKSG--FHVMAIRPPTVPPN 431 (476)
T ss_pred HHHHHHHHHHHCC--CEEEEECCCCCCCC
Confidence 4678899999999 88999999988776
No 174
>TIGR02578 cas_TM1811_Csm1 CRISPR-associated protein, Csm1 family. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2. A typical example is TM1811 from Thermotoga maritima. CRISPR are Clustered Regularly Interspaced Short Palindromic Repeats. This protein family belongs to a conserved gene cluster regularly found near CRISPR repeats.
Probab=37.91 E-value=50 Score=27.73 Aligned_cols=43 Identities=19% Similarity=0.182 Sum_probs=30.4
Q ss_pred HHhcCCcccEEEEEeCCCceeeeecCCCcHHH--HHHHHHHHHHHHhh
Q 043546 53 LKKRGWKGRVELVEHLDEKHVFYLRNPTCTNA--LELTNKFISFIKQN 98 (110)
Q Consensus 53 L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a--~~~~~~i~~fl~~~ 98 (110)
|++.| .+..-++|.|.+| |.++.|.++++ .++.+++-+|+-+.
T Consensus 290 L~~l~--L~~~nil~~gGG~-F~lLlPnt~~~~l~~~~~~in~~l~~~ 334 (648)
T TIGR02578 290 LEELN--LTRTNILFDGGGH-FYLLLPNTEEARLEKLRERIEEELLKE 334 (648)
T ss_pred HHHcC--CChhheEEecCCe-EEEEecCChHHHHHHHHHHHHHHHHHh
Confidence 45578 7888999999999 77777877764 34445556666554
No 175
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=37.89 E-value=71 Score=25.55 Aligned_cols=36 Identities=19% Similarity=0.134 Sum_probs=28.5
Q ss_pred CcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeC
Q 043546 30 ERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHL 68 (110)
Q Consensus 30 PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~ 68 (110)
++++|++-+.+. ...+..++++|+++| ..|++..-.
T Consensus 336 ~~v~v~~~~~~~-~~~a~~la~~LR~~g--~~~~~~~~~ 371 (429)
T COG0124 336 VDVYVVPLGEDA-EPEALKLAQKLRAAG--ISVEVDYSG 371 (429)
T ss_pred CCEEEEEcCchh-HHHHHHHHHHHHHcC--CcEEEEecc
Confidence 578888887666 688999999999999 667765543
No 176
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=37.75 E-value=73 Score=25.77 Aligned_cols=43 Identities=16% Similarity=0.071 Sum_probs=33.0
Q ss_pred CcccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCC
Q 043546 23 DLARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLD 69 (110)
Q Consensus 23 ~l~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g 69 (110)
++.++.+ |+|++.|-+|.....+.+..+.+.+.| +..+.+-|.
T Consensus 227 ~~~~i~v-P~l~~~gw~D~~~~g~~~~~~~~~~~~---~~~lilGpw 269 (550)
T TIGR00976 227 DLGGSDV-PTLVTGGWYDNHSRGSIRLFLAVHRGG---AQRLVVGPW 269 (550)
T ss_pred HhcCCCC-CEEEeCcccCCCCchHHHHHHHHhhcC---CceEEEccC
Confidence 4445554 999999999988888888888887765 467776664
No 177
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=37.74 E-value=87 Score=21.54 Aligned_cols=28 Identities=14% Similarity=0.299 Sum_probs=20.2
Q ss_pred cEEEEecCCCccchHHHHHHHHHHhcCC
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKKRGW 58 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~~G~ 58 (110)
|.+|+.-+.-=+.+..+.++++|.+.|+
T Consensus 15 ~~Vvv~~d~~G~~~~~~~~ad~lA~~Gy 42 (218)
T PF01738_consen 15 PAVVVIHDIFGLNPNIRDLADRLAEEGY 42 (218)
T ss_dssp EEEEEE-BTTBS-HHHHHHHHHHHHTT-
T ss_pred CEEEEEcCCCCCchHHHHHHHHHHhcCC
Confidence 6666665555567899999999999993
No 178
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=37.50 E-value=56 Score=24.73 Aligned_cols=39 Identities=18% Similarity=0.130 Sum_probs=30.4
Q ss_pred cEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCce
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKH 72 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H 72 (110)
+.-|++.|.-|.. +|+.+++.|.+.| ++|++..-..+.+
T Consensus 146 ~~~V~v~EsrP~~-~G~~~a~~L~~~G--I~vtlI~Dsav~~ 184 (310)
T PRK08535 146 DIEVIATETRPRN-QGHITAKELAEYG--IPVTLIVDSAVRY 184 (310)
T ss_pred eEEEEEecCCchh-hHHHHHHHHHHCC--CCEEEEehhHHHH
Confidence 3456677877765 5799999999999 9999887666555
No 179
>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]
Probab=37.24 E-value=1.1e+02 Score=21.06 Aligned_cols=46 Identities=13% Similarity=0.070 Sum_probs=34.5
Q ss_pred cEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhhhCCccchh
Q 043546 61 RVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQNNGSLRSSI 106 (110)
Q Consensus 61 ~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~~~~~~~~~ 106 (110)
+|+....|.-.=++....+.-..-.+.++++..|.+++.-++.+|+
T Consensus 2 dv~I~e~p~~~VA~~rh~G~~~~~~~~~~~l~~W~~~~~l~p~~S~ 47 (154)
T COG3449 2 DVEIIELPPIPVAYLRHVGDPATLKQTFEQLIAWRRENGLLPEQSE 47 (154)
T ss_pred CceEEecCCceEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCCCCce
Confidence 4677777877766666555555677889999999999988887554
No 180
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=36.98 E-value=96 Score=22.81 Aligned_cols=57 Identities=25% Similarity=0.374 Sum_probs=34.5
Q ss_pred CCCCcEEEEecCCCccchHH--HHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 27 LGCERVLIFVAERDYLCPAG--KNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 27 l~~PP~lv~~g~~D~L~d~~--~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
+.+ |+|-+-|+.|.+...+ ..+++... +.++.+.+ .+|-.+ ......+.+++||...
T Consensus 162 i~~-PSLHi~G~~D~iv~~~~s~~L~~~~~------~a~vl~Hp-ggH~VP-------~~~~~~~~i~~fi~~~ 220 (230)
T KOG2551|consen 162 LST-PSLHIFGETDTIVPSERSEQLAESFK------DATVLEHP-GGHIVP-------NKAKYKEKIADFIQSF 220 (230)
T ss_pred CCC-CeeEEecccceeecchHHHHHHHhcC------CCeEEecC-CCccCC-------CchHHHHHHHHHHHHH
Confidence 444 9999999999886554 55555543 33333334 566332 2235667777777654
No 181
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=36.61 E-value=64 Score=24.88 Aligned_cols=40 Identities=15% Similarity=0.063 Sum_probs=30.7
Q ss_pred cEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCce
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKH 72 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H 72 (110)
..-|++.|-.|.....+..++.|.+.| ++|++..-..+.+
T Consensus 180 ~~~V~v~EsrP~~qG~rlta~~L~~~G--I~vtlI~Dsav~~ 219 (331)
T TIGR00512 180 LEHVYADETRPRLQGARLTAWELVQEG--IPATLITDSMAAH 219 (331)
T ss_pred ceEEEECCCCchhhHHHHHHHHHHHCC--CCEEEEcccHHHH
Confidence 456788888887655567799999999 9999877654444
No 182
>PF00496 SBP_bac_5: Bacterial extracellular solute-binding proteins, family 5 Middle; InterPro: IPR000914 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into Gram-positive bacteria which are surrounded by a single membrane and therefore have no periplasmic region the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families of clusters, which generally correlate with the nature of the solute bound. Family 5 currently includes periplasmic oligopeptide-binding proteins (oppA) of Gram-negative bacteria and homologous lipoproteins in Gram-positive bacteria (oppA, amiA or appA); periplasmic dipeptide-binding proteins of Escherichia coli (dppA) and Bacillus subtilis (dppE); periplasmic murein peptide-binding protein of E. coli (mppA); periplasmic peptide-binding proteins sapA of E. coli, Salmonella typhimurium and Haemophilus influenzae; periplasmic nickel-binding protein (nikA) of E. coli; haem-binding lipoprotein (hbpA or dppA) from H. influenzae; lipoprotein xP55 from Streptomyces lividans; and hypothetical proteins from H. influenzae (HI0213) and Rhizobium sp. (strain NGR234) symbiotic plasmid (y4tO and y4wM).; GO: 0005215 transporter activity, 0006810 transport; PDB: 1B51_A 1B0H_A 1QKA_A 1B9J_A 1B6H_A 1OLA_A 1B3L_C 1JEV_A 1B5H_A 1JET_A ....
Probab=36.57 E-value=65 Score=23.90 Aligned_cols=36 Identities=19% Similarity=0.250 Sum_probs=28.7
Q ss_pred EEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCC
Q 043546 32 VLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLD 69 (110)
Q Consensus 32 ~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g 69 (110)
++++..+.....+-+..+++.|++.| ++|++...+.
T Consensus 297 ~~~~~~~~~~~~~~a~~l~~~l~~~G--i~v~i~~~~~ 332 (374)
T PF00496_consen 297 IILYTSDDPIWKAIAEALQEQLKKIG--IKVEIKPVDF 332 (374)
T ss_dssp EEEEETTSHHHHHHHHHHHHHHHHTT--EEEEEEEESH
T ss_pred cccccccccchHHHHHHHHHHHhhcc--eeEEEEEeCh
Confidence 33444555567889999999999999 9999998876
No 183
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=35.87 E-value=1.4e+02 Score=20.19 Aligned_cols=12 Identities=17% Similarity=0.329 Sum_probs=9.8
Q ss_pred EEEEecCCCccc
Q 043546 32 VLIFVAERDYLC 43 (110)
Q Consensus 32 ~lv~~g~~D~L~ 43 (110)
++|++|.+|..+
T Consensus 72 V~i~~G~ND~~~ 83 (204)
T cd04506 72 ITITIGGNDLMQ 83 (204)
T ss_pred EEEEecchhHHH
Confidence 578899999764
No 184
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=35.87 E-value=1.1e+02 Score=19.13 Aligned_cols=40 Identities=18% Similarity=0.186 Sum_probs=33.4
Q ss_pred CCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCC
Q 043546 38 ERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNP 79 (110)
Q Consensus 38 ~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~ 79 (110)
+.|-+..+-.+|++.|++.| +=+.+-..+|......++.-
T Consensus 18 ~~~~i~a~Eka~a~eLq~~G--k~~~lWRv~G~~~n~sifdv 57 (90)
T TIGR03221 18 KAAAIKAREKAYAQELQREG--KWRHLWRVAGEYANYSIFDV 57 (90)
T ss_pred HHHHHHHHHHHHHHHHHhCC--ceEEEEEecCCceeEEEEEc
Confidence 34567778889999999999 88888888999998887754
No 185
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=35.81 E-value=69 Score=18.48 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHhcCCcccEEEEEeCCCc
Q 043546 44 PAGKNYYEELKKRGWKGRVELVEHLDEK 71 (110)
Q Consensus 44 d~~~~~a~~L~~~G~~v~v~~~~~~g~~ 71 (110)
.-+.++|..|++.| .+|++....+..
T Consensus 9 ~ig~E~A~~l~~~g--~~vtli~~~~~~ 34 (80)
T PF00070_consen 9 FIGIELAEALAELG--KEVTLIERSDRL 34 (80)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSSSS
T ss_pred HHHHHHHHHHHHhC--cEEEEEeccchh
Confidence 34899999999999 888887776553
No 186
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=35.08 E-value=9.3 Score=28.08 Aligned_cols=27 Identities=11% Similarity=0.165 Sum_probs=20.2
Q ss_pred eeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 72 HVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 72 H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
.||..+...+..+.....++..||++.
T Consensus 5 ~G~~~l~~r~k~g~~~~kel~~flkeR 31 (261)
T cd07674 5 AGFDVLYHNMKHGQISTKELADFVRER 31 (261)
T ss_pred cChHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 456555556677888999999999873
No 187
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=34.67 E-value=47 Score=24.47 Aligned_cols=40 Identities=8% Similarity=-0.062 Sum_probs=31.0
Q ss_pred CcEEEEecCCC-ccchHHHHHHHHHHhcCCcccEEEEEeCCCc
Q 043546 30 ERVLIFVAERD-YLCPAGKNYYEELKKRGWKGRVELVEHLDEK 71 (110)
Q Consensus 30 PP~lv~~g~~D-~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~ 71 (110)
.+.+|++|++. .=.+|+..|.+.|.+.| |+-+-.+.+...
T Consensus 82 ~~~ilvSGg~~~~~~~Ea~~M~~yLi~~G--Vp~e~Ii~e~~s 122 (239)
T PRK10834 82 VNYLLLSGDNALQSYNEPMTMRKDLIAAG--VDPSDIVLDYAG 122 (239)
T ss_pred CCEEEEeCCCCCCCCCHHHHHHHHHHHcC--CCHHHEEecCCC
Confidence 47788888764 23689999999999999 887776666543
No 188
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=34.67 E-value=1.2e+02 Score=18.97 Aligned_cols=40 Identities=18% Similarity=0.105 Sum_probs=32.6
Q ss_pred CCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCC
Q 043546 39 RDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPT 80 (110)
Q Consensus 39 ~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~ 80 (110)
.|-+..+-.++++.|++.| +=+.+-..+|..-.+.++...
T Consensus 20 ~~~~~a~E~~~a~eLq~~G--~~~~lWr~~G~~~n~~Ifdv~ 59 (91)
T PF02426_consen 20 VDRLKAREKARAQELQRQG--KWRHLWRVVGRYANVSIFDVE 59 (91)
T ss_pred HHHHHHHHHHHHHHHHHCC--eeeEEEEecCCcceEEEEECC
Confidence 3567788899999999999 778888888988888777543
No 189
>cd07364 PCA_45_Dioxygenase_B Subunit B of the Class III extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of protocatechuate. Protocatechuate 4,5-dioxygenase (LigAB) catalyzes the oxidization and subsequent ring-opening of protocatechuate (or 3,4-dihydroxybenzoic acid, PCA), an intermediate in the breakdown of lignin and other compounds. Protocatechuate 4,5-dioxygenase is an aromatic ring opening dioxygenase belonging to the class III extradiol enzyme family, a group of enyzmes that cleaves aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon using a non-heme Fe(II). LigAB is composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. The B subunit (LigB) is the catalytic subunit of LigAB.
Probab=34.57 E-value=84 Score=23.43 Aligned_cols=29 Identities=14% Similarity=0.108 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHhcCCcccEEEEEeCCCceee
Q 043546 44 PAGKNYYEELKKRGWKGRVELVEHLDEKHVF 74 (110)
Q Consensus 44 d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f 74 (110)
+=+...++.+++.| +++....--+.+||.
T Consensus 99 ~LA~~i~~~~~~~g--~~~~~~~~~~lDHG~ 127 (277)
T cd07364 99 DLAWHIAQSLILDD--FDMTIVNEMDVDHGL 127 (277)
T ss_pred HHHHHHHHHHHHcC--CCEEecCCCCCCcch
Confidence 33667777788899 888777677899994
No 190
>PF00936 BMC: BMC domain; InterPro: IPR000249 This domain is found in a variety of polyhedral organelle shell proteins, including CsoS1A, CsoS1B and CsoS1C of Thiobacillus neapolitanus (Halothiobacillus neapolitanus) and their orthologs from other bacteria. Some autotrophic and non-autotrophic organisms form polyhedral organelles, carboxysomes/enterosomes []. The best studied is the carboxysome of Halothiobacillus neapolitanus, which is composed of at least 9 proteins: six shell proteins, CsoS1A, CsoS1B, CsoS1C, Cso2A, Cso2B and CsoS3 (carbonic anhydrase) [], one protein of unknown function and the large and small subunits of RuBisCo (CbbL and Cbbs). Carboxysomes appear to be approximately 120 nm in diameter, most often observed as regular hexagons, with a solid interior bounded by a unilamellar protein shell. The interior is filled with type I RuBisCo, which is composed of 8 large subunits and 8 small subunits; it accounts for 60% of the carboxysomal protein, which amounts to approximately 300 molecules of enzyme per carboxysome. Carboxysomes are required for autotrophic growth at low CO2 concentrations and are thought to function as part of a CO2-concentrating mechanism [, ]. Polyhedral organelles, enterosomes, from non-autotrophic organisms are involved in coenzyme B12-dependent 1,2-propanediol utilisation (e.g., in Salmonella enterica []) and ethanolamine utilisation (e.g., in Salmonella typhimurium []). Genes needed for enterosome formation are located in the 1,2-propanediol utilisation pdu [, ] or ethanolamine utilisation eut [, ] operons, respectively. Although enterosomes of non-autotrophic organisms are apparently related to carboxysomes structurally, a functional relationship is uncertain. A role in CO2 concentration, similar to that of the carboxysome, is unlikely since there is no known association between CO2 and coenzyme B12-dependent 1,2-propanediol or ethanolamine utilisation []. It seems probable that entrosomes help protect the cells from reactive aldehyde species in the degradation pathways of 1,2-propanediol and ethanolamine [].; PDB: 3F56_C 3FCH_A 3I87_A 3GFH_B 3I82_A 3MPV_A 3IO0_A 4AXJ_B 3N79_A 2G13_A ....
Probab=34.26 E-value=1e+02 Score=18.16 Aligned_cols=51 Identities=8% Similarity=-0.057 Sum_probs=32.3
Q ss_pred HHHHHH-HHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 46 GKNYYE-ELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 46 ~~~~a~-~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
+...++ .||++. |.+........++.+..+.+...+-+.+++...+.+.+.
T Consensus 14 ~i~aaD~alKaa~--V~l~~~~~~~~g~~~~~i~G~vs~V~~Av~a~~~~~~~~ 65 (75)
T PF00936_consen 14 AIVAADAALKAAN--VELVEIELICGGKVTVIITGDVSAVKAAVDAAEEAAGKK 65 (75)
T ss_dssp HHHHHHHHHHHSS--EEEEEEEEESTTEEEEEEEESHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcCC--EEEEEEEecCCCeEEEEEEECHHHHHHHHHHHHHHHhhc
Confidence 344444 455555 555444444555666666677778888888888877764
No 191
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=34.26 E-value=74 Score=24.64 Aligned_cols=40 Identities=15% Similarity=0.116 Sum_probs=30.8
Q ss_pred cEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCce
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKH 72 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H 72 (110)
..-|++.|--|+....+..+..|.+.| ++|++..-..+.+
T Consensus 180 ~~~V~v~EsRP~~qG~~lta~eL~~~G--I~vtlI~Dsa~~~ 219 (344)
T PRK05720 180 DIHVYADETRPRLQGARLTAWELYQAG--IDVTVITDNMAAH 219 (344)
T ss_pred ceEEEEcCCCChhhhHHHHHHHHHHCC--CCEEEEcccHHHH
Confidence 456788888898755557799999999 9999886554444
No 192
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=34.19 E-value=1.9e+02 Score=22.95 Aligned_cols=71 Identities=13% Similarity=0.103 Sum_probs=44.3
Q ss_pred CcccCCCCcEEEEecCCCccchHHH--HHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhhh
Q 043546 23 DLARLGCERVLIFVAERDYLCPAGK--NYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQNN 99 (110)
Q Consensus 23 ~l~~l~~PP~lv~~g~~D~L~d~~~--~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~~ 99 (110)
+++++.+ |+.+..|+.|.|.|... .+...+..+. + ......++=.| +...- ..+..++.++.+++.|+...
T Consensus 327 ~l~~i~~-P~~l~~g~~D~l~~~~DV~~~~~~~~~~~--~-~~~~~~~~ynH-lDFi~-g~da~~~vy~~vi~~~~~~~ 399 (403)
T KOG2624|consen 327 DLTNIKV-PTALYYGDNDWLADPEDVLILLLVLPNSV--I-KYIVPIPEYNH-LDFIW-GLDAKEEVYDPVIERLRLFE 399 (403)
T ss_pred Ccccccc-CEEEEecCCcccCCHHHHHHHHHhccccc--c-cccccCCCccc-eeeee-ccCcHHHHHHHHHHHHHhhh
Confidence 4555554 99999999999865443 3445544444 3 22222677777 33332 33455677889998888654
No 193
>cd07368 PhnC_Bs_like PhnC is a Class III Extradiol ring-cleavage dioxygenase involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. This subfamily is composed of Burkholderia sp. PhnC and similar poteins. PhnC is one of nine protein products encoded by the phn locus. These proteins are involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. PhnC is a member of the class III extradiol dioxygenase family, a group os enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=33.97 E-value=85 Score=23.28 Aligned_cols=30 Identities=10% Similarity=0.076 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHhcCCcccEEEEEeCCCceeee
Q 043546 44 PAGKNYYEELKKRGWKGRVELVEHLDEKHVFY 75 (110)
Q Consensus 44 d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~ 75 (110)
+=+...++.+++.| +++....--+.+||+.
T Consensus 96 eLA~~i~~~l~~~g--~~~~~~~~~~lDHG~~ 125 (277)
T cd07368 96 PLAHHIMQHGLEYG--IDWAVARSFTVDHAAT 125 (277)
T ss_pred HHHHHHHHHHHHcC--CCEeeecCcCCCcchh
Confidence 34667777778899 7787666667889863
No 194
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=33.90 E-value=89 Score=17.37 Aligned_cols=58 Identities=14% Similarity=-0.003 Sum_probs=30.9
Q ss_pred EEEEecCCCccchHHHHHHHHHHhcCCcccE---EEEEeCCCceeeeecCCCcHHHHHHHHHHH
Q 043546 32 VLIFVAERDYLCPAGKNYYEELKKRGWKGRV---ELVEHLDEKHVFYLRNPTCTNALELTNKFI 92 (110)
Q Consensus 32 ~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v---~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~ 92 (110)
-.|++|... =.+++..+.++|+..| .++ ...--.+....+.--.....+|+++...+.
T Consensus 5 y~vQv~s~~-~~~~A~~~~~~l~~~g--~~~~~~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 5 YYVQVGSFS-SEENAERLLAKLKKKG--PDAYVVQVSKGGPWYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp EEEEEEEES--HHHHHHHHHHHHHHT-------EEEEEETTCEEEEECCECTCCHHHHHHHHHH
T ss_pred EEEEEEEcC-CHHHHHHHHHHHHhcC--CCcceEEEecCCceEEEEECCCCCHHHHHHHHHHHh
Confidence 345566443 3567889999999999 664 222222333333211135566777666554
No 195
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=33.88 E-value=32 Score=22.55 Aligned_cols=31 Identities=10% Similarity=-0.007 Sum_probs=19.0
Q ss_pred CcEEEEecCCCc--cchHHHHHHHHHHhcCCcccE
Q 043546 30 ERVLIFVAERDY--LCPAGKNYYEELKKRGWKGRV 62 (110)
Q Consensus 30 PP~lv~~g~~D~--L~d~~~~~a~~L~~~G~~v~v 62 (110)
-|.+|++|+... -..++..+.+.|.+.| ++.
T Consensus 38 ~~~il~SGg~~~~~~~~ea~~~~~~l~~~g--vp~ 70 (155)
T PF02698_consen 38 APRILFSGGYGHGDGRSEAEAMRDYLIELG--VPE 70 (155)
T ss_dssp T--EEEE--SSTTHTS-HHHHHHHHHHHT-----G
T ss_pred CCeEEECCCCCCCCCCCHHHHHHHHHHhcc--cch
Confidence 367888887776 4789999999999999 763
No 196
>cd07045 BMC_CcmK_like Carbon dioxide concentrating mechanism K (CcmK)-like proteins, Bacterial Micro-Compartment (BMC) domain. Bacterial micro-compartments are primitive protein-based organelles that sequester specific metabolic pathways in bacterial cells. The prototypical bacterial microcompartment is the carboxysome shell, a bacterial polyhedral organelle which increase the efficiency of CO2 fixation by encapsulating RuBisCO and carbonic anhydrase. They can be divided into two types: alpha-type carboxysomes (alpha-cyanobacteria and proteobacteria) and beta-type carboxysomes (beta-cyanobacteria). Potential functional differences between the two types are not yet fully understood. In addition to these proteins there are several homologous shell proteins including those found in pdu organelles involved in coenzyme B12-dependent degradation of 1,2-propanediol and eut organelles involved in the cobalamin-dependent degradation of ethanolamine. Structure evidence shows that several carbox
Probab=33.79 E-value=1.1e+02 Score=18.53 Aligned_cols=53 Identities=8% Similarity=-0.137 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 45 AGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 45 ~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
.+...++.+-++. +|++....-.+.++.+..+.+....-+.+++...+...+.
T Consensus 12 ~~i~aaD~~lKaA-~V~l~~~~~~~~gk~~vii~GdvsaV~~Av~a~~~~~~~~ 64 (84)
T cd07045 12 AAIEAADAALKAA-NVTLVGYEKVGGGLVTVKITGDVAAVKAAVEAGAAAAERI 64 (84)
T ss_pred HHHHHHHHHhhhC-CeEEEEEEecCCcEEEEEEEEcHHHHHHHHHHHHHHHhcc
Confidence 3555666655554 1444333333444555566677777778887777776663
No 197
>KOG3153 consensus Thiamine pyrophosphokinase [Coenzyme transport and metabolism]
Probab=33.78 E-value=1.3e+02 Score=22.36 Aligned_cols=52 Identities=15% Similarity=0.262 Sum_probs=34.1
Q ss_pred EEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhhhCCccch
Q 043546 34 IFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQNNGSLRSS 105 (110)
Q Consensus 34 v~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~~~~~~~~ 105 (110)
+++|..|-++++...|.++ .| ++ .+.-|+..| .-+.+-.++|+.+..+.+++
T Consensus 74 ~I~GDfDSi~~ev~~yy~~---~g--~~--vV~~pdQd~-------------TDftKcv~~i~~~~~~~e~~ 125 (250)
T KOG3153|consen 74 YICGDFDSITEEVDDYYKK---NG--VT--VVHTPDQDT-------------TDFTKCVKWIQEHKTLTEWK 125 (250)
T ss_pred eeecchhhhhHHHHHHHHh---cC--Ce--eEeCCCcCc-------------chHHHHHHHHHHhcccccce
Confidence 6789999999999999875 57 44 444466555 11344556677765555443
No 198
>cd01846 fatty_acyltransferase_like Fatty acyltransferase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Might catalyze fatty acid transfer between phosphatidylcholine and sterols.
Probab=33.68 E-value=1.7e+02 Score=20.76 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=17.2
Q ss_pred EEEEecCCCccc----------------hHHHHHHHHHHhcC
Q 043546 32 VLIFVAERDYLC----------------PAGKNYYEELKKRG 57 (110)
Q Consensus 32 ~lv~~g~~D~L~----------------d~~~~~a~~L~~~G 57 (110)
++|..|.+|.+. +.-....++|.++|
T Consensus 103 ~~i~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~g 144 (270)
T cd01846 103 VAIWIGANDLLNALDLPQNPDTLVTRAVDNLFQALQRLYAAG 144 (270)
T ss_pred EEEEeccchhhhhccccccccccHHHHHHHHHHHHHHHHHCC
Confidence 357889999764 23345556677778
No 199
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=33.66 E-value=61 Score=24.18 Aligned_cols=67 Identities=15% Similarity=0.004 Sum_probs=43.4
Q ss_pred cEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhhhC-Cccch
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQNNG-SLRSS 105 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~~~-~~~~~ 105 (110)
|.|.+.|..|.|..-- .+.+.-...|. -.-.+.++|++.|-=-.. .+-.++.|.+||.+... +|.+.
T Consensus 223 P~LFiSGlkDelVPP~-~Mr~Ly~~c~S-~~Krl~eFP~gtHNDT~i------~dGYfq~i~dFlaE~~~~~P~~~ 290 (300)
T KOG4391|consen 223 PFLFISGLKDELVPPV-MMRQLYELCPS-RTKRLAEFPDGTHNDTWI------CDGYFQAIEDFLAEVVKSSPEEM 290 (300)
T ss_pred ceEEeecCccccCCcH-HHHHHHHhCch-hhhhheeCCCCccCceEE------eccHHHHHHHHHHHhccCChHHh
Confidence 9999999999776432 23333344452 234789999999942221 22457889999999844 55443
No 200
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=33.57 E-value=1e+02 Score=19.76 Aligned_cols=32 Identities=19% Similarity=0.122 Sum_probs=22.9
Q ss_pred EEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeC
Q 043546 33 LIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHL 68 (110)
Q Consensus 33 lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~ 68 (110)
+.++|+-..+. +..+.++|++.| .+|....-+
T Consensus 5 l~vtGs~~~~~--~~~~l~~L~~~g--~~v~vv~S~ 36 (129)
T PF02441_consen 5 LGVTGSIAAYK--APDLLRRLKRAG--WEVRVVLSP 36 (129)
T ss_dssp EEE-SSGGGGG--HHHHHHHHHTTT--SEEEEEESH
T ss_pred EEEECHHHHHH--HHHHHHHHhhCC--CEEEEEECC
Confidence 45666666665 999999999999 667665543
No 201
>PRK10494 hypothetical protein; Provisional
Probab=33.29 E-value=48 Score=24.41 Aligned_cols=37 Identities=19% Similarity=0.082 Sum_probs=27.1
Q ss_pred cEEEEecCC--CccchHHHHHHHHHHhcCCcccEEEEEeCC
Q 043546 31 RVLIFVAER--DYLCPAGKNYYEELKKRGWKGRVELVEHLD 69 (110)
Q Consensus 31 P~lv~~g~~--D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g 69 (110)
+.+|++|+. +.-..++..+++.|.+.| |+.+-.+.++
T Consensus 122 ~~ii~SGg~~~~~~~sEA~~~~~~l~~lG--Vp~~~Ii~e~ 160 (259)
T PRK10494 122 AKLIFTGGAAKTNTVSTAEVGARVAQSLG--VPREDIITLD 160 (259)
T ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHcC--CCHHHeeeCC
Confidence 667777764 334679999999999999 8876555443
No 202
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=33.11 E-value=83 Score=22.67 Aligned_cols=39 Identities=26% Similarity=0.210 Sum_probs=29.3
Q ss_pred cccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeC
Q 043546 24 LARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHL 68 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~ 68 (110)
++.++.++.++.+-+.| .+..+.+.|++.| +++++....
T Consensus 46 la~lG~~v~~is~vG~D----~g~~i~~~l~~~g--i~~~~~~~~ 84 (289)
T cd01164 46 LKDLGVEVTALGFLGGF----TGDFFEALLKEEG--IPDDFVEVA 84 (289)
T ss_pred HHHcCCCeEEEEEccCc----hhHHHHHHHHHcC--CCceEEECC
Confidence 56677778887665555 3788889999999 888776654
No 203
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=32.78 E-value=1.1e+02 Score=25.35 Aligned_cols=46 Identities=22% Similarity=0.364 Sum_probs=31.7
Q ss_pred CcccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCcee
Q 043546 23 DLARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHV 73 (110)
Q Consensus 23 ~l~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~ 73 (110)
+|+++.+ |+|++.|+.|-+....-.|.- .+-.| .+++++..+| +|.
T Consensus 436 dL~~I~~-Pvl~va~~~DHIvPw~s~~~~-~~l~g--s~~~fvl~~g-GHI 481 (560)
T TIGR01839 436 DLKKVKC-DSFSVAGTNDHITPWDAVYRS-ALLLG--GKRRFVLSNS-GHI 481 (560)
T ss_pred chhcCCC-CeEEEecCcCCcCCHHHHHHH-HHHcC--CCeEEEecCC-Ccc
Confidence 6777776 999999999987655444433 22345 5788888864 464
No 204
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=32.77 E-value=11 Score=27.56 Aligned_cols=28 Identities=7% Similarity=0.170 Sum_probs=23.1
Q ss_pred ceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 71 KHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 71 ~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
.+||..+...+..+...++++.+|+++.
T Consensus 4 ~~G~~~L~~r~k~g~~~~~el~~f~keR 31 (261)
T cd07648 4 NNGFDVLYHNMKHGQIAVKELADFLRER 31 (261)
T ss_pred CcChHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 5778777667788889999999999875
No 205
>PRK10907 intramembrane serine protease GlpG; Provisional
Probab=32.48 E-value=1.3e+02 Score=22.47 Aligned_cols=49 Identities=6% Similarity=0.230 Sum_probs=31.6
Q ss_pred chHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHh
Q 043546 43 CPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQ 97 (110)
Q Consensus 43 ~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~ 97 (110)
-.++..|.+-|+..| ++++.. -++...-+. ...+...++.++..+|++.
T Consensus 10 ~~~a~~f~dyl~~~~--i~~~~~-~~~~~~lwl---~d~~~~~~~~~~~~~f~~~ 58 (276)
T PRK10907 10 PRLAQAFVDYMATQG--VILTIQ-QHNQSDIWL---ADESQAERVRAELARFLEN 58 (276)
T ss_pred HHHHHHHHHHHHHCC--CcEEEe-cCCceEEEe---cCHHHHHHHHHHHHHHHhC
Confidence 346889999999999 888776 223333232 2344555666677777765
No 206
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=32.47 E-value=1.1e+02 Score=18.16 Aligned_cols=44 Identities=14% Similarity=0.292 Sum_probs=28.0
Q ss_pred HHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHh
Q 043546 50 YEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQ 97 (110)
Q Consensus 50 a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~ 97 (110)
-+.|+++|. |.++-....+-+--+. ..++..++++....++|++
T Consensus 35 L~~Le~~Gy-V~~~k~~~~~~p~t~~---~lT~~Gr~~~~~~~~~L~~ 78 (80)
T PF13601_consen 35 LKKLEEAGY-VEVEKEFEGRRPRTWY---SLTDKGREAFERYVAALRE 78 (80)
T ss_dssp HHHHHHTTS-EEEEEE-SSS--EEEE---EE-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCC-EEEEEeccCCCCeEEE---EECHHHHHHHHHHHHHHHH
Confidence 367889996 5665433333344444 3568899999999888876
No 207
>cd07049 BMC_EutL_repeat1 ethanolamine utilization protein S (EutS), Bacterial Micro-Compartment (BMC) domain repeat 1. EutL proteins are homologs of the carboxysome shell protein. They are encoded within the eut operon and might be required for the formation of the outer shell of the bacterial eut polyhedral organelles which are involved in the cobalamin-dependent degradation of ethanolamine. Although it has been suggested that EutL might form hexamers and further assemble into the flat facets of the polyhedral outer shell of the eut organelles at present no experimental evidence directly supports this view. EutL proteins contain two tandem BMC domains. This CD includes domain 1 (the first BMC domain of EutL).
Probab=32.35 E-value=1.4e+02 Score=19.18 Aligned_cols=61 Identities=21% Similarity=0.134 Sum_probs=41.5
Q ss_pred EEecCCCccchHHHHHHHHHHhcCCcccEEEE--EeCCCceee-------e--ecCCCcHHHHHHHHHHHHHHHhh
Q 043546 34 IFVAERDYLCPAGKNYYEELKKRGWKGRVELV--EHLDEKHVF-------Y--LRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 34 v~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~--~~~g~~H~f-------~--~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
|++...|- -.-.+.=+..|+++ |+|-+. .|-|..|+. . +-.+...+.+..++.+.+++.+.
T Consensus 29 Ilt~~~~e--~~iiA~DeAtKaa~--vev~~~~~f~gGa~h~~~~~sG~vi~ii~G~dvsdV~sal~~~l~~l~~~ 100 (103)
T cd07049 29 IITADSDD--VTYTALDEATKAAE--VEVVYARSFYAGAAHASTPLAGEVIGILAGPSPAEVRSGLNAAIDFIENE 100 (103)
T ss_pred EEEeCCCc--ceeehhhhhhhhcC--eEEEEEeecccccccCccCCCccEEEEEeCCCHHHHHHHHHHHHHHHhcc
Confidence 55555554 22344446667888 776653 355889997 4 33447788999999999998765
No 208
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=32.34 E-value=53 Score=26.48 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=22.8
Q ss_pred chHHHHHHHHHHhcCCcccEEEEEeCCCceeeee
Q 043546 43 CPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYL 76 (110)
Q Consensus 43 ~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~ 76 (110)
.++++.+++.|.+.| ++| +.|..+|+.++
T Consensus 315 ~~~a~~La~~L~~~G--vpv---~~p~ggh~V~v 343 (450)
T TIGR02618 315 VKQVRYLGDKLKAAG--VPI---VEPVGGHAVFL 343 (450)
T ss_pred HHHHHHHHHHHHHCC--Ccc---cCCCCcceEEE
Confidence 345788999999999 887 45778898765
No 209
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=32.30 E-value=96 Score=20.79 Aligned_cols=31 Identities=16% Similarity=0.238 Sum_probs=24.4
Q ss_pred cEEEEecCCCccchHHHHHHHHHHhcCCcccEEE
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKKRGWKGRVEL 64 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~ 64 (110)
+.++++||. ...++-.++.+++++.| .++.+
T Consensus 63 ~gVt~SGGE-l~~~~l~~ll~~lk~~G--l~i~l 93 (147)
T TIGR02826 63 SCVLFLGGE-WNREALLSLLKIFKEKG--LKTCL 93 (147)
T ss_pred CEEEEechh-cCHHHHHHHHHHHHHCC--CCEEE
Confidence 567888886 66788889999999999 65543
No 210
>PRK05629 hypothetical protein; Validated
Probab=32.06 E-value=59 Score=24.30 Aligned_cols=41 Identities=5% Similarity=0.143 Sum_probs=29.6
Q ss_pred CCcEEEEecCCCccchHHHH-HHHHHHhcCCcccEEEEEeCCC
Q 043546 29 CERVLIFVAERDYLCPAGKN-YYEELKKRGWKGRVELVEHLDE 70 (110)
Q Consensus 29 ~PP~lv~~g~~D~L~d~~~~-~a~~L~~~G~~v~v~~~~~~g~ 70 (110)
++|++++.|+.+.|.++... +.+++...|+ -+-.+.++.|.
T Consensus 5 l~~vyL~~G~e~~l~~~~~~~i~~~~~~~~~-~~~n~~~~d~~ 46 (318)
T PRK05629 5 QPPVHLVLGDDEFLAERARLNIVHDIRSSMA-DSLQVTTLKAS 46 (318)
T ss_pred CCceEEEEeCHHHHHHHHHHHHHHHHhccCC-CCCceEEeecc
Confidence 47999999998888887776 7777766662 24566666554
No 211
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=31.92 E-value=80 Score=25.62 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=23.9
Q ss_pred EEEEecCCCccchHHHHHHHHHHhcCCcccEEEEE
Q 043546 32 VLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVE 66 (110)
Q Consensus 32 ~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~ 66 (110)
++|+.-+ |...+.+..++++|+++| ..|++..
T Consensus 473 v~vi~~~-~~~~~~a~~ia~~LR~~G--i~v~~d~ 504 (563)
T TIGR00418 473 VVVIPVN-ERHLDYAKKVAQKLKKAG--IRVDVDD 504 (563)
T ss_pred EEEEEcc-chHHHHHHHHHHHHHHcC--CEEEEEC
Confidence 3444433 667788999999999999 7788653
No 212
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [].; GO: 0000049 tRNA binding
Probab=31.76 E-value=72 Score=23.84 Aligned_cols=32 Identities=25% Similarity=0.231 Sum_probs=28.1
Q ss_pred cEEEEecCCCccchHHHHHHHHHHhcCCcccEEE
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKKRGWKGRVEL 64 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~ 64 (110)
-+||+.-+...|+.++++.++.|-++| +.+++
T Consensus 7 DVLV~S~~~~~L~~~~~~iv~~LW~~g--IsAd~ 38 (273)
T PF12745_consen 7 DVLVCSFGPSSLRTEGIEIVQELWAAG--ISADL 38 (273)
T ss_pred eEEEEeCChhHHHHHHHHHHHHHHHCC--CceEe
Confidence 567777777789999999999999999 88888
No 213
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=31.69 E-value=56 Score=24.94 Aligned_cols=37 Identities=19% Similarity=0.186 Sum_probs=27.3
Q ss_pred EEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCce
Q 043546 33 LIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKH 72 (110)
Q Consensus 33 lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H 72 (110)
-|++-|-=|.. +|..+++.|++.| +++++++=.-+.|
T Consensus 147 ~V~VtESRP~~-eG~~~ak~L~~~g--I~~~~I~Dsa~~~ 183 (301)
T COG1184 147 KVIVTESRPRG-EGRIMAKELRQSG--IPVTVIVDSAVGA 183 (301)
T ss_pred EEEEEcCCCcc-hHHHHHHHHHHcC--CceEEEechHHHH
Confidence 45555544544 5999999999999 9999887665554
No 214
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=31.59 E-value=1.4e+02 Score=21.82 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHhcCCcccEEEEEeCCC------ceeeeecCCCcHHHHHHHHHHHHH
Q 043546 44 PAGKNYYEELKKRGWKGRVELVEHLDE------KHVFYLRNPTCTNALELTNKFISF 94 (110)
Q Consensus 44 d~~~~~a~~L~~~G~~v~v~~~~~~g~------~H~f~~~~~~~~~a~~~~~~i~~f 94 (110)
...+.|.+.|+..= --||+.+|+|. .||+....+. .-+++++.|.++
T Consensus 30 ss~~~y~~aL~~Gc--RcvElD~wdg~~~ep~V~HG~t~ts~i--~f~dv~~~Ik~~ 82 (231)
T cd08598 30 SSVEGYIRALQRGC--RCVEIDVWDGDDGEPVVTHGYTLTSSV--PFRDVCRAIKKY 82 (231)
T ss_pred cCHHHHHHHHHhCC--cEEEEEeecCCCCCcEEeeCCCCcCce--EHHHHHHHHHHH
Confidence 44678888887643 45799999987 3887654332 123444555444
No 215
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=31.55 E-value=12 Score=27.38 Aligned_cols=24 Identities=13% Similarity=0.193 Sum_probs=16.5
Q ss_pred eeecCCCcHHHHHHHHHHHHHHHh
Q 043546 74 FYLRNPTCTNALELTNKFISFIKQ 97 (110)
Q Consensus 74 f~~~~~~~~~a~~~~~~i~~fl~~ 97 (110)
|..+...+..+.+.++++..|+++
T Consensus 7 y~~l~~r~~~g~~~~~el~~f~kE 30 (240)
T cd07672 7 YDCIIQHLNDGRKNCKEFEDFLKE 30 (240)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333556778888889999886
No 216
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=31.49 E-value=95 Score=21.80 Aligned_cols=65 Identities=15% Similarity=0.188 Sum_probs=41.2
Q ss_pred cEEEEecCCCc-cchHHHHHHHHHHhcCCcccEEEEEeCCC-----ceeeeecC-CCcHHHHHHHHHHHHHHHhh
Q 043546 31 RVLIFVAERDY-LCPAGKNYYEELKKRGWKGRVELVEHLDE-----KHVFYLRN-PTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 31 P~lv~~g~~D~-L~d~~~~~a~~L~~~G~~v~v~~~~~~g~-----~H~f~~~~-~~~~~a~~~~~~i~~fl~~~ 98 (110)
.+||.-++.|= -+.=+...|..|++.| .+|+++-.... .| |..+- ..+=.-.+.-..+.+|++++
T Consensus 2 k~LIlYstr~GqT~kIA~~iA~~L~e~g--~qvdi~dl~~~~~~~l~~-ydavVIgAsI~~~h~~~~~~~Fv~k~ 73 (175)
T COG4635 2 KTLILYSTRDGQTRKIAEYIASHLRESG--IQVDIQDLHAVEEPALED-YDAVVIGASIRYGHFHEAVQSFVKKH 73 (175)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHhhhcC--CeeeeeehhhhhccChhh-CceEEEecchhhhhhHHHHHHHHHHH
Confidence 68899999883 4555788899999999 78887654422 22 22211 11122345556677788776
No 217
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=31.36 E-value=1.2e+02 Score=24.24 Aligned_cols=69 Identities=19% Similarity=0.231 Sum_probs=46.3
Q ss_pred cccCCCCcEEEEecCCCccchH-HHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHH-HHHHHHhh
Q 043546 24 LARLGCERVLIFVAERDYLCPA-GKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNK-FISFIKQN 98 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D~L~d~-~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~-i~~fl~~~ 98 (110)
+..+.. |+|.+.+..||+... +.-.-+. .+. ..|-+.+-.-.+|--.+ +...+.++.++++ +.+|+...
T Consensus 318 v~~I~V-P~L~ina~DDPv~p~~~ip~~~~--~~n--p~v~l~~T~~GGHlgfl-eg~~p~~~~w~~~~l~ef~~~~ 388 (409)
T KOG1838|consen 318 VDKIKV-PLLCINAADDPVVPEEAIPIDDI--KSN--PNVLLVITSHGGHLGFL-EGLWPSARTWMDKLLVEFLGNA 388 (409)
T ss_pred cccccc-cEEEEecCCCCCCCcccCCHHHH--hcC--CcEEEEEeCCCceeeee-ccCCCccchhHHHHHHHHHHHH
Confidence 444454 999999999999765 3333333 334 56888888888885433 3455577777777 77777654
No 218
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.26 E-value=75 Score=21.22 Aligned_cols=37 Identities=16% Similarity=0.052 Sum_probs=26.3
Q ss_pred CCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEE
Q 043546 28 GCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVE 66 (110)
Q Consensus 28 ~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~ 66 (110)
+++=++|=|.+..+--++.+.|.++|.+++ .+|--+.
T Consensus 58 Gl~y~~iPV~~~~iT~~dV~~f~~Al~eae--gPVlayC 94 (130)
T COG3453 58 GLTYTHIPVTGGGITEADVEAFQRALDEAE--GPVLAYC 94 (130)
T ss_pred CCceEEeecCCCCCCHHHHHHHHHHHHHhC--CCEEeee
Confidence 445667777777777778888888888887 6665443
No 219
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=31.02 E-value=97 Score=16.95 Aligned_cols=25 Identities=24% Similarity=0.167 Sum_probs=22.8
Q ss_pred EEEecCCCccchHHHHHHHHHHhcC
Q 043546 33 LIFVAERDYLCPAGKNYYEELKKRG 57 (110)
Q Consensus 33 lv~~g~~D~L~d~~~~~a~~L~~~G 57 (110)
.++.|.+|+++..=..+.+++++.+
T Consensus 2 ~~~~G~Fdp~H~GH~~~l~~a~~~~ 26 (66)
T TIGR00125 2 VIFVGTFDPFHLGHLDLLERAKELF 26 (66)
T ss_pred EEEcCccCCCCHHHHHHHHHHHHhC
Confidence 4788999999999999999999988
No 220
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=31.01 E-value=84 Score=23.26 Aligned_cols=34 Identities=18% Similarity=0.306 Sum_probs=26.3
Q ss_pred CCcEEEEecCC---CccchHHHHHHHHHHhcCCcccEEE
Q 043546 29 CERVLIFVAER---DYLCPAGKNYYEELKKRGWKGRVEL 64 (110)
Q Consensus 29 ~PP~lv~~g~~---D~L~d~~~~~a~~L~~~G~~v~v~~ 64 (110)
+-|.+++.|.+ |.-.|+...+-..|.++| .+|+.
T Consensus 198 L~PlMlvAG~Ha~nDMasddedswk~il~~~G--~~v~~ 234 (265)
T COG4822 198 LIPLMLVAGDHAKNDMASDDEDSWKNILEKNG--FKVEV 234 (265)
T ss_pred EeeeEEeechhhhhhhcccchHHHHHHHHhCC--ceeEE
Confidence 35777777764 567888899999999999 66753
No 221
>COG4099 Predicted peptidase [General function prediction only]
Probab=30.97 E-value=49 Score=25.75 Aligned_cols=48 Identities=17% Similarity=0.205 Sum_probs=37.5
Q ss_pred CcEEEEecCCCcc--chHHHHHHHHHHhcCCcccEEEEEeC---CCceeeeecCC
Q 043546 30 ERVLIFVAERDYL--CPAGKNYYEELKKRGWKGRVELVEHL---DEKHVFYLRNP 79 (110)
Q Consensus 30 PP~lv~~g~~D~L--~d~~~~~a~~L~~~G~~v~v~~~~~~---g~~H~f~~~~~ 79 (110)
-|.+|.+++.|.. ...++-..++|++.+ .+|.+..+. -..||+.....
T Consensus 316 ~piWvfhs~dDkv~Pv~nSrv~y~~lk~~~--~kv~Ytaf~~g~~~~eG~d~~g~ 368 (387)
T COG4099 316 APIWVFHSSDDKVIPVSNSRVLYERLKALD--RKVNYTAFLEGTTVLEGVDHSGV 368 (387)
T ss_pred CceEEEEecCCCccccCcceeehHHHHhhc--cccchhhhhhccccccccCCCCc
Confidence 4999999999953 667888889999999 889888887 45666654443
No 222
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=30.89 E-value=96 Score=22.39 Aligned_cols=40 Identities=20% Similarity=0.197 Sum_probs=29.8
Q ss_pred cccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCC
Q 043546 24 LARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLD 69 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g 69 (110)
++.++.+..++..-+.| .+..+.+.|++.| +++.+....+
T Consensus 45 la~lG~~v~~is~vG~D----~g~~~~~~L~~~g--Id~~~~~~~~ 84 (304)
T TIGR03828 45 LKNLGVDVVALGFLGGF----TGDFIEALLREEG--IKTDFVRVPG 84 (304)
T ss_pred HHHcCCCeEEEEEecCc----hhHHHHHHHHHCC--CcceEEECCC
Confidence 55677777777666666 3889999999999 8887766543
No 223
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=30.76 E-value=1.3e+02 Score=24.14 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=28.0
Q ss_pred CCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeC
Q 043546 28 GCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHL 68 (110)
Q Consensus 28 ~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~ 68 (110)
.+|.-++++|+. --+.+||..+++.| ++|++.+.-
T Consensus 171 ~lP~~lvIiGgG----~IGlE~a~~~~~LG--~~VTiie~~ 205 (454)
T COG1249 171 ELPKSLVIVGGG----YIGLEFASVFAALG--SKVTVVERG 205 (454)
T ss_pred cCCCEEEEECCC----HHHHHHHHHHHHcC--CcEEEEecC
Confidence 468888888883 44899999999999 778866544
No 224
>PF05908 DUF867: Protein of unknown function (DUF867); InterPro: IPR008585 This family consists of a number of bacterial and phage proteins with no known function and which are found in Bacillus species and the Lambda-like viruses.; PDB: 3A9L_A.
Probab=30.45 E-value=64 Score=23.01 Aligned_cols=33 Identities=30% Similarity=0.303 Sum_probs=19.0
Q ss_pred EEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeC
Q 043546 32 VLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHL 68 (110)
Q Consensus 32 ~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~ 68 (110)
..|.+|+.|..+ ....++.|+++| ..|++..-+
T Consensus 105 ~~v~vGG~d~~l--~~~i~~~L~~~G--f~v~~~~~~ 137 (194)
T PF05908_consen 105 ETVYVGGRDREL--REAIAEALEKAG--FTVELASSP 137 (194)
T ss_dssp --EEEESS-HHH--HHHHHHHHHHTT-------EE--
T ss_pred CEEEECCCCHHH--HHHHHHHHHHcC--CceeecCCC
Confidence 568888888765 678889999999 678665554
No 225
>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=30.45 E-value=43 Score=25.05 Aligned_cols=29 Identities=14% Similarity=0.109 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcCCcccEEEEEeCCCceeee
Q 043546 45 AGKNYYEELKKRGWKGRVELVEHLDEKHVFY 75 (110)
Q Consensus 45 ~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~ 75 (110)
-+.++++.+.+.| +++....-.+.+||+.
T Consensus 100 lA~~i~~~l~~~g--id~~~~~~~~lDHG~~ 128 (278)
T PRK13364 100 LSWHIIESLVEEE--FDITTCQEMLVDHAFT 128 (278)
T ss_pred HHHHHHHHHHHcC--CCeecccCCCCCcchh
Confidence 3677778888999 8888887889999974
No 226
>cd07056 BMC_PduK 1,2-propanediol utilization protein K (PduK), Bacterial Micro-Compartment (BMC) domain repeat 1l. PduK proteins are homologs of the carboxysome shell protein. They are encoded within the pdu operon and might be required for the formation of the outer shell of the bacterial pdu polyhedral organelles which are involved in coenzyme B12-dependent degradation of 1,2-propanediol. Although it has been suggested that PduK might form hexamers and further assemble into the flat facets of the polyhedral outer shell of pdu organelles at present no experimental evidence directly supports this view.
Probab=30.35 E-value=1.3e+02 Score=18.01 Aligned_cols=50 Identities=6% Similarity=-0.103 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCCcccEEEEEe---CCCceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 46 GKNYYEELKKRGWKGRVELVEH---LDEKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 46 ~~~~a~~L~~~G~~v~v~~~~~---~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
+..-++.+-++. +|++..+ -|.++.+..+.....+-+.+++...+...+.
T Consensus 13 ~i~aaD~~lKaA---~V~l~~~~~~~g~G~~~viv~GdvsaV~~Av~a~~~~~~~~ 65 (77)
T cd07056 13 AIVVADRMAKTA---NVRLLGLENTKGSGWMTVKISGDVAAVNAAIEAGKQTAGAS 65 (77)
T ss_pred HHHHHHHHHhhC---ceEEEEEEeccCceEEEEEEEeeHHHHHHHHHHHHHHHhcc
Confidence 445555555553 3555544 3678887788777777788888777766643
No 227
>PRK15405 ethanolamine utilization protein EutL; Provisional
Probab=30.30 E-value=1.8e+02 Score=21.16 Aligned_cols=62 Identities=16% Similarity=0.121 Sum_probs=39.7
Q ss_pred EEecCCCccchHHHHHHHHHHhcCCcccEEEE--EeCCCceee---------eecCCCcHHHHHHHHHHHHHHHhhh
Q 043546 34 IFVAERDYLCPAGKNYYEELKKRGWKGRVELV--EHLDEKHVF---------YLRNPTCTNALELTNKFISFIKQNN 99 (110)
Q Consensus 34 v~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~--~~~g~~H~f---------~~~~~~~~~a~~~~~~i~~fl~~~~ 99 (110)
|++..-+. ..-+..=+.+|++. |++-+- .|-|..||. .+-.+...+.+..++...++|.+..
T Consensus 38 Iit~~s~a--~~i~AaDeA~KAAn--Vevv~a~~~~gGaghg~~~~~G~viiIi~G~dvsdVrsAveaa~~~i~~~~ 110 (217)
T PRK15405 38 LITADSDD--VTYTALDEATKQAM--VEVVYARSFYAGAAHASTPLAGEVIGILAGPNPAEVRAGLDAMVAFIENGA 110 (217)
T ss_pred EEEecCcc--hHHhHHHHHHhhcc--eEEEEEEeeccccccCCCCCCccEEEEEeCCCHHHHHHHHHHHHHHHHhhh
Confidence 44444333 33444556666777 555432 345889997 2333477889999999999998863
No 228
>PF02156 Glyco_hydro_26: Glycosyl hydrolase family 26; InterPro: IPR022790 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 26 GH26 from CAZY encompasses mainly mannan endo-1,4-beta-mannosidases (3.2.1.78 from EC). Mannan endo-1,4-beta-mannosidase hydrolyses mannan and galactomannan, but displays little activity towards other plant cell wall polysaccharides []. The enzyme randomly hydrolyses 1,4-beta-D-linkages in mannans, galacto-mannans, glucomannans and galactoglucomannans. This entry also incoporates the enzyme Endogluconase H 3.2.1.4 from EC catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans. ; GO: 0008810 cellulase activity, 0016985 mannan endo-1,4-beta-mannosidase activity, 0006080 substituted mannan metabolic process; PDB: 2QHA_A 3CBW_A 2WHK_A 2VI0_A 2BVD_A 2BV9_A 2CIT_A 2V3G_A 2CIP_A 2X2Y_B ....
Probab=30.23 E-value=1.8e+02 Score=22.07 Aligned_cols=54 Identities=9% Similarity=0.144 Sum_probs=37.5
Q ss_pred chHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCC----cHHHHHHHHHHHHHHHhh
Q 043546 43 CPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPT----CTNALELTNKFISFIKQN 98 (110)
Q Consensus 43 ~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~----~~~a~~~~~~i~~fl~~~ 98 (110)
.|..-.+.++|+++| |+|-+.-+-.|.=++.--... ..+-+++.+.+.+.|+..
T Consensus 136 ld~iA~~l~~l~~~~--vPVl~Rp~HE~nG~WfwWg~~~~~~~~~y~~lwr~~~~~l~~~ 193 (311)
T PF02156_consen 136 LDRIADFLKQLKDAG--VPVLFRPFHEMNGGWFWWGAKGHCTPEQYKALWRHMVDYLRNV 193 (311)
T ss_dssp HHHHHHHHHHHHCTT--S-EEEEESTSTTSSSSTTSTTSTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhcCC--CeEEEeehhhcCCCccccCCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 566777778888899 999988887776555443333 344577778888888753
No 229
>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=30.19 E-value=1.5e+02 Score=22.07 Aligned_cols=33 Identities=24% Similarity=0.212 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHhcCCcccEEEEEeCCC--------ceeeeecC
Q 043546 44 PAGKNYYEELKKRGWKGRVELVEHLDE--------KHVFYLRN 78 (110)
Q Consensus 44 d~~~~~a~~L~~~G~~v~v~~~~~~g~--------~H~f~~~~ 78 (110)
...+.|.+.|+ .|- --||+.+|+|. .||+....
T Consensus 30 ss~e~y~~aL~-~Gc-RcvElD~wdG~~~~~ePiV~HG~tlts 70 (258)
T cd08623 30 SSVEMYRQVLL-SGC-RCVELDCWKGRTAEEEPVITHGFTMTT 70 (258)
T ss_pred cCHHHHHHHHH-cCC-CEEEEEeeCCCCCCCCCEEeeCCCccc
Confidence 44778889997 452 45799999996 68765443
No 230
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=30.12 E-value=79 Score=19.15 Aligned_cols=35 Identities=11% Similarity=0.145 Sum_probs=22.8
Q ss_pred chHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCC
Q 043546 43 CPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNP 79 (110)
Q Consensus 43 ~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~ 79 (110)
.++-.++.++|+++| +++.-...++..+++....|
T Consensus 65 ~~d~~~~~~~l~~~G--i~~~~~~~~~~~~~~~~~DP 99 (112)
T cd08344 65 EDDFAAFARHLEAAG--VALAAAPPGADPDGVWFRDP 99 (112)
T ss_pred hhhHHHHHHHHHHcC--CceecCCCcCCCCEEEEECC
Confidence 477888999999999 77654333334455554433
No 231
>COG1872 Uncharacterized conserved protein [Function unknown]
Probab=30.10 E-value=44 Score=21.44 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHhhhCCccchhh
Q 043546 82 TNALELTNKFISFIKQNNGSLRSSIE 107 (110)
Q Consensus 82 ~~a~~~~~~i~~fl~~~~~~~~~~~~ 107 (110)
|+--.+.+.++.||.+..+-++|+|+
T Consensus 46 P~~GKAN~~li~~Lak~~~v~kS~V~ 71 (102)
T COG1872 46 PVDGKANEELIKFLAKTFGVPKSSVE 71 (102)
T ss_pred CCCcchhHHHHHHHHHHhCCCcccEE
Confidence 44457889999999999999999885
No 232
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional
Probab=29.96 E-value=83 Score=24.91 Aligned_cols=32 Identities=25% Similarity=0.273 Sum_probs=23.9
Q ss_pred EEEEecCCCccchHHHHHHHHHHhcCCcccEEEEE
Q 043546 32 VLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVE 66 (110)
Q Consensus 32 ~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~ 66 (110)
++|+.- .+.+.+.+..+++.|+++| ..|++..
T Consensus 277 V~IIpl-~eel~e~AlkLA~eLR~aG--IrVeiDl 308 (387)
T PRK14938 277 VRILPV-KKDFLDFSIQVAERLRKEG--IRVNVDD 308 (387)
T ss_pred EEEEEe-ChHHHHHHHHHHHHHHHCC--CEEEEEC
Confidence 344444 3458889999999999999 7777654
No 233
>TIGR00666 PBP4 D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family. In E. coli, this protein is known as penicillin binding protein 4 (dacB). A signal sequence is cleaved from a precursor form. The protein is described as periplasmic in E. coli (Gram-negative) and extracellular in Actinomadura R39 (Gram-positive). Unlike some other proteins with similar activity, it does not form transpeptidation. It is not essential for viability. This family is related to class A beta-lactamases.
Probab=29.86 E-value=67 Score=24.63 Aligned_cols=29 Identities=24% Similarity=0.158 Sum_probs=24.1
Q ss_pred CcEEEEecCCCcc--chHHHHHHHHHHhcCC
Q 043546 30 ERVLIFVAERDYL--CPAGKNYYEELKKRGW 58 (110)
Q Consensus 30 PP~lv~~g~~D~L--~d~~~~~a~~L~~~G~ 58 (110)
.-.|++.|+.||. .++-..+++.|++.|.
T Consensus 54 ~G~L~i~G~GDP~L~~~~L~~la~~l~~~Gi 84 (345)
T TIGR00666 54 KGNLVLRFGGDPTLKRQDIRNLVATLKKSGV 84 (345)
T ss_pred cccEEEEeecCCCcCHHHHHHHHHHHHHcCC
Confidence 3578999999986 5567899999999993
No 234
>PRK05090 hypothetical protein; Validated
Probab=29.84 E-value=51 Score=20.76 Aligned_cols=26 Identities=8% Similarity=0.143 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHhhhCCccchhh
Q 043546 82 TNALELTNKFISFIKQNNGSLRSSIE 107 (110)
Q Consensus 82 ~~a~~~~~~i~~fl~~~~~~~~~~~~ 107 (110)
|.--++.+.+++||.+..+-++|+|+
T Consensus 42 PveGkAN~ali~~LAk~l~v~ks~I~ 67 (95)
T PRK05090 42 PVDGQANAHLLKFLAKQFRVAKSQVV 67 (95)
T ss_pred CCCChHHHHHHHHHHHHhCCChhhEE
Confidence 34447788999999999998888875
No 235
>KOG3101 consensus Esterase D [General function prediction only]
Probab=29.76 E-value=1.5e+02 Score=22.08 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=33.7
Q ss_pred cEEEEecCCCccchHHHHHHHHHHhc---CCcccEEEEEeCCCceeeeecCCC
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKKR---GWKGRVELVEHLDEKHVFYLRNPT 80 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~~---G~~v~v~~~~~~g~~H~f~~~~~~ 80 (110)
-.||-.|+.|.+..+.. .-+.|.++ .|+.+|.+..-+|-+|.++.....
T Consensus 217 ~ilIdqG~~D~Fl~~qL-lPe~l~~a~~~~~~~~v~~r~~~gyDHSYyfIaTF 268 (283)
T KOG3101|consen 217 DILIDQGAADNFLAEQL-LPENLLEACKATWQAPVVFRLQEGYDHSYYFIATF 268 (283)
T ss_pred cEEEecCccchhhhhhc-ChHHHHHHhhccccccEEEEeecCCCcceeeehhh
Confidence 57899999998776332 22333322 244689999999999998876543
No 236
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=29.72 E-value=1.3e+02 Score=22.28 Aligned_cols=28 Identities=11% Similarity=-0.009 Sum_probs=22.4
Q ss_pred chHHHHHHHHHHhcCCcccEEEEEeCCCce
Q 043546 43 CPAGKNYYEELKKRGWKGRVELVEHLDEKH 72 (110)
Q Consensus 43 ~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H 72 (110)
.++.+++++++++.| +++..++..-..|
T Consensus 24 ~~ev~~v~~~~r~~~--iP~D~i~lD~dw~ 51 (292)
T cd06595 24 DEEYLALMDRFKKHN--IPLDVLVIDMDWH 51 (292)
T ss_pred HHHHHHHHHHHHHhC--CCccEEEEecccc
Confidence 467899999999999 8888887754333
No 237
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=29.44 E-value=1.3e+02 Score=21.57 Aligned_cols=40 Identities=35% Similarity=0.423 Sum_probs=29.9
Q ss_pred cccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeC
Q 043546 24 LARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHL 68 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~ 68 (110)
++.++.+..++..-+.|.+ +..+.+.|++.| +++.+....
T Consensus 41 l~~lg~~~~~~~~vG~D~~---g~~i~~~l~~~g--i~~~~~~~~ 80 (293)
T TIGR02152 41 AARLGAEVSMIGKVGDDAF---GDELLENLKSNG--IDTEYVGTV 80 (293)
T ss_pred HHHCCCCEEEEEEecCCcc---HHHHHHHHHHcC--CCeeEEEEc
Confidence 5567777778877777755 567778899999 888877654
No 238
>PRK15415 propanediol utilization protein PduB; Provisional
Probab=28.95 E-value=1.7e+02 Score=22.06 Aligned_cols=49 Identities=10% Similarity=0.009 Sum_probs=29.9
Q ss_pred HHHHHHHhcCCcccEEEEEeC-----CCceeeeecCC--CcHHHHHHHHHHHHHHHhh
Q 043546 48 NYYEELKKRGWKGRVELVEHL-----DEKHVFYLRNP--TCTNALELTNKFISFIKQN 98 (110)
Q Consensus 48 ~~a~~L~~~G~~v~v~~~~~~-----g~~H~f~~~~~--~~~~a~~~~~~i~~fl~~~ 98 (110)
..=+.+|++. |++-..+.. +.+||+.++.. .....+.+++...+.+.+.
T Consensus 92 AaD~AvKAAn--Veli~i~l~r~~~G~~g~G~~ii~g~gDVs~Vr~AVeaa~~~~~~~ 147 (266)
T PRK15415 92 AADEAVKATN--TEVVSIELPRDTKGGAGHGSLIIFGAEDVSDVRRAVEVALKELDRT 147 (266)
T ss_pred HHHHHHhhcC--cEEEEEEccccccCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHhh
Confidence 3334555566 555444333 56799988765 6677777776666655544
No 239
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=28.75 E-value=1.9e+02 Score=19.66 Aligned_cols=61 Identities=11% Similarity=0.007 Sum_probs=35.0
Q ss_pred EEEEecCCCccch----------------HHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHH
Q 043546 32 VLIFVAERDYLCP----------------AGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFI 95 (110)
Q Consensus 32 ~lv~~g~~D~L~d----------------~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl 95 (110)
++|+.|.+|.... .-..+.+++++.| ++|-+.-.+-... ... ..+..+....++.+|+
T Consensus 78 vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~--~~vil~t~~P~~~-~~~---~~~~~~~~~~~~n~~~ 151 (204)
T cd01830 78 VIILEGVNDIGASGTDFAAAPVTAEELIAGYRQLIRRAHARG--IKVIGATITPFEG-SGY---YTPAREATRQAVNEWI 151 (204)
T ss_pred EEEecccccccccccccccCCCCHHHHHHHHHHHHHHHHHCC--CeEEEecCCCCCC-CCC---CCHHHHHHHHHHHHHH
Confidence 7889999997543 2345677777788 6665433332211 111 2234445556777777
Q ss_pred Hhh
Q 043546 96 KQN 98 (110)
Q Consensus 96 ~~~ 98 (110)
++.
T Consensus 152 ~~~ 154 (204)
T cd01830 152 RTS 154 (204)
T ss_pred Hcc
Confidence 764
No 240
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=28.63 E-value=1.2e+02 Score=21.56 Aligned_cols=44 Identities=30% Similarity=0.308 Sum_probs=31.8
Q ss_pred cccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCce
Q 043546 24 LARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKH 72 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H 72 (110)
++.++.+-+++..-+.|.+ +..+.+.|++.| +++.....++...
T Consensus 45 l~~lG~~~~~~~~lG~D~~---g~~i~~~L~~~g--I~~~~~~~~~~~t 88 (288)
T cd01941 45 LARLGVSVALLSAVGDDSE---GESILEESEKAG--LNVRGIVFEGRST 88 (288)
T ss_pred HHHhCCCcEEEEEEecCcc---HHHHHHHHHHcC--CccceeeeCCCCc
Confidence 4567777788877777754 567778999999 8887766655433
No 241
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=28.62 E-value=1.4e+02 Score=23.75 Aligned_cols=43 Identities=21% Similarity=0.157 Sum_probs=34.5
Q ss_pred CcEEEEecCCCcc--chHHHHHHHHHHhcCCcccEEEEEe-----------CCCceee
Q 043546 30 ERVLIFVAERDYL--CPAGKNYYEELKKRGWKGRVELVEH-----------LDEKHVF 74 (110)
Q Consensus 30 PP~lv~~g~~D~L--~d~~~~~a~~L~~~G~~v~v~~~~~-----------~g~~H~f 74 (110)
|-.+..++..|.+ .++-+++++.|++.| -+|+++.. +.+.||.
T Consensus 294 ~~yvsYHs~~D~~~p~~~K~~l~~~l~~lg--fda~l~lIkdes~iDGkfIKnl~HGm 349 (403)
T PF11144_consen 294 IIYVSYHSIKDDLAPAEDKEELYEILKNLG--FDATLHLIKDESEIDGKFIKNLEHGM 349 (403)
T ss_pred eEEEEEeccCCCCCCHHHHHHHHHHHHHcC--CCeEEEEecChhhccchheeccccCC
Confidence 4455778999975 788999999999999 67888887 4667774
No 242
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=28.54 E-value=1.9e+02 Score=21.64 Aligned_cols=60 Identities=3% Similarity=-0.102 Sum_probs=41.8
Q ss_pred EEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 34 IFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 34 v~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
--.++.|-..|.++.=|.+|+++| ++.- +.++-+- ++......++.-.+|..+++-+.+.
T Consensus 24 ~~~~~~~~vid~A~~dA~~leegG--~Dav--ivEN~gD-~Pf~k~v~~~tvaaMa~iv~~v~r~ 83 (263)
T COG0434 24 YDAGSLEAVIDRAVRDAAALEEGG--VDAV--IVENYGD-APFLKDVGPETVAAMAVIVREVVRE 83 (263)
T ss_pred cccCCHHHHHHHHHHHHHHHHhCC--CcEE--EEeccCC-CCCCCCCChHHHHHHHHHHHHHHHh
Confidence 445577889999999999999999 5555 4444333 2333346677778888887777654
No 243
>cd07949 PCA_45_Doxase_B_like_1 The B subunit of unknown Class III extradiol dioxygenases with similarity to Protocatechuate 4,5-dioxygenase. This subfamily is composed of proteins of unknown function with similarity to the B subunit of Protocatechuate 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=28.52 E-value=46 Score=24.78 Aligned_cols=29 Identities=10% Similarity=0.020 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCCcccEEEEEeCCCceeee
Q 043546 45 AGKNYYEELKKRGWKGRVELVEHLDEKHVFY 75 (110)
Q Consensus 45 ~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~ 75 (110)
=+.+.++.+.+.| +++......+.+||+.
T Consensus 100 LA~~i~~~~~~~g--~d~~~~~~~~lDHG~~ 128 (276)
T cd07949 100 LSWHLIESLVEDE--FDITTCQEMLVDHACT 128 (276)
T ss_pred HHHHHHHHHHHcC--CCeeccCCCCCCcchh
Confidence 3667778888999 8888777788999964
No 244
>PHA02447 hypothetical protein
Probab=28.48 E-value=36 Score=20.28 Aligned_cols=21 Identities=19% Similarity=0.471 Sum_probs=15.5
Q ss_pred cccccCCCCCCCCCCCCC--CCcCc
Q 043546 2 WLYMCANNDGPQDPRMKP--PAEDL 24 (110)
Q Consensus 2 w~~~lp~~~~~~~p~~sP--~~~~l 24 (110)
|+..||+ |+.+.+++| .+.++
T Consensus 22 wravlpg--drrnawinpsdvagdf 44 (86)
T PHA02447 22 WRAVLPG--DRRNAWINPSDVAGDF 44 (86)
T ss_pred eeeecCC--cccccccChhhcccce
Confidence 7788887 678889999 44443
No 245
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=28.45 E-value=1e+02 Score=22.59 Aligned_cols=39 Identities=13% Similarity=0.067 Sum_probs=28.5
Q ss_pred cccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCC
Q 043546 24 LARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLD 69 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g 69 (110)
+++|+.+..++..-+ | +.+..+.+.|++ | ++.++...++
T Consensus 46 la~LG~~~~~~~~vG-d---~~G~~i~~~l~~-g--I~~~~~~~~~ 84 (309)
T PRK13508 46 LSEFGENVLATGLIG-G---ELGQFIAEHLDD-Q--IKHAFYKIKG 84 (309)
T ss_pred HHHcCCCeEEEEEec-C---hhHHHHHHHHHc-C--CCceEEECCC
Confidence 556777666664444 5 458999999999 9 8887766554
No 246
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=28.36 E-value=1.2e+02 Score=23.80 Aligned_cols=40 Identities=18% Similarity=0.126 Sum_probs=31.3
Q ss_pred cEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCce
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKH 72 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H 72 (110)
..-|++.|-.|.....+..+..|.+.| ++|++..-..+.+
T Consensus 201 ~f~V~v~EsRP~~qG~rlta~eL~~~G--IpvtlI~Dsa~~~ 240 (363)
T PRK05772 201 SVSVIAPETRPWLQGSRLTVYELMEEG--IKVTLITDTAVGL 240 (363)
T ss_pred eEEEEECCCCccchhHHHHHHHHHHCC--CCEEEEehhHHHH
Confidence 456778888898776677789999999 9999887554444
No 247
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=28.23 E-value=89 Score=24.28 Aligned_cols=44 Identities=18% Similarity=0.107 Sum_probs=26.9
Q ss_pred CCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCC
Q 043546 29 CERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNP 79 (110)
Q Consensus 29 ~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~ 79 (110)
...++.+.|+.||=+.-+ ...... ..+...+.+|+.|+..+..+
T Consensus 376 ~tnviFtNG~~DPW~~lg-----v~~~~~--~~~~~~~I~g~~Hc~Dl~~~ 419 (434)
T PF05577_consen 376 ATNVIFTNGELDPWRALG-----VTSDSS--DSVPAIVIPGGAHCSDLYPP 419 (434)
T ss_dssp --SEEEEEETT-CCGGGS-------S-SS--SSEEEEEETT--TTGGGS--
T ss_pred CCeEEeeCCCCCCccccc-----CCCCCC--CCcccEEECCCeeeccccCC
Confidence 369999999999987666 222334 45666788999999887754
No 248
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=28.09 E-value=1.4e+02 Score=17.68 Aligned_cols=58 Identities=12% Similarity=-0.015 Sum_probs=36.3
Q ss_pred EEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecC-CCcHHHHHHHHHHHHHH
Q 043546 33 LIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRN-PTCTNALELTNKFISFI 95 (110)
Q Consensus 33 lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~-~~~~~a~~~~~~i~~fl 95 (110)
+|+.|-.|-. ..=..+|+.|.+.| . ....+.--+||-.--. ...+.-.+.++++..|+
T Consensus 20 ~i~HG~~eh~-~ry~~~a~~L~~~G--~--~V~~~D~rGhG~S~g~rg~~~~~~~~v~D~~~~~ 78 (79)
T PF12146_consen 20 VIVHGFGEHS-GRYAHLAEFLAEQG--Y--AVFAYDHRGHGRSEGKRGHIDSFDDYVDDLHQFI 78 (79)
T ss_pred EEeCCcHHHH-HHHHHHHHHHHhCC--C--EEEEECCCcCCCCCCcccccCCHHHHHHHHHHHh
Confidence 4555554432 24567889999999 3 4446666777765421 24455667778887776
No 249
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=28.07 E-value=1.7e+02 Score=21.86 Aligned_cols=33 Identities=15% Similarity=-0.022 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHhcCCcccEEEEEeCCCc--------eeeeecC
Q 043546 44 PAGKNYYEELKKRGWKGRVELVEHLDEK--------HVFYLRN 78 (110)
Q Consensus 44 d~~~~~a~~L~~~G~~v~v~~~~~~g~~--------H~f~~~~ 78 (110)
...+.|.+.|++.= --||+.+|+|-. ||+....
T Consensus 30 ss~e~y~~aL~~Gc--RcvElD~Wdg~~~~~eP~V~HG~tlts 70 (257)
T cd08591 30 SSVEMYRQVLLSGC--RCIELDCWDGKGEDEEPIITHGKTMCT 70 (257)
T ss_pred ccHHHHHHHHHhCC--cEEEEEeecCCCCCCCCEEeeCCCCcc
Confidence 45678999998554 568999999985 8876543
No 250
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=28.07 E-value=1e+02 Score=20.48 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=27.7
Q ss_pred CcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEE
Q 043546 30 ERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELV 65 (110)
Q Consensus 30 PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~ 65 (110)
.+++.+++..+..+..+++-.+.+++.| .+.+.+
T Consensus 104 ~Rvieiv~~d~~~~~~aR~r~r~Yr~~G--~~l~~~ 137 (142)
T PRK05728 104 ERVVDFVGYDEAAKQAARERWKAYRAAG--YALTYW 137 (142)
T ss_pred cEEEEEeCCCHHHHHHHHHHHHHHHHCC--CCceEe
Confidence 5778888777778999999999999999 666544
No 251
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=27.99 E-value=1.7e+02 Score=21.84 Aligned_cols=33 Identities=15% Similarity=-0.018 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHhcCCcccEEEEEeCCC--------ceeeeecC
Q 043546 44 PAGKNYYEELKKRGWKGRVELVEHLDE--------KHVFYLRN 78 (110)
Q Consensus 44 d~~~~~a~~L~~~G~~v~v~~~~~~g~--------~H~f~~~~ 78 (110)
...+.|.+.|++.= --||+.+|+|- .||+....
T Consensus 30 ss~~~y~~aL~~Gc--RcvElD~wdg~~~~~eP~V~HG~tlts 70 (257)
T cd08626 30 SSVEMYRQVLLAGC--RCIELDCWDGKGEDQEPIITHGKAMCT 70 (257)
T ss_pred ccHHHHHHHHHcCC--cEEEEEecCCCCCCCCCEEeeCCCCcc
Confidence 44678999997543 46799999985 67765443
No 252
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=27.95 E-value=96 Score=25.69 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=20.8
Q ss_pred CccchHHHHHHHHHHhcCCcccEEEEE
Q 043546 40 DYLCPAGKNYYEELKKRGWKGRVELVE 66 (110)
Q Consensus 40 D~L~d~~~~~a~~L~~~G~~v~v~~~~ 66 (110)
+.+.+.+.+.++.|++.| ..|++..
T Consensus 469 ~el~~~A~eIa~~LR~~G--I~VeiD~ 493 (551)
T TIGR00389 469 EELKEIAKEIFQALRKTG--IRIKYDD 493 (551)
T ss_pred HHHHHHHHHHHHHHHHCC--CEEEEEC
Confidence 458889999999999999 7787653
No 253
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=27.84 E-value=64 Score=20.96 Aligned_cols=37 Identities=14% Similarity=-0.031 Sum_probs=27.4
Q ss_pred CcEEEEecCCCc--cchHHHHHHHHHHhcCCcccEEEEEeC
Q 043546 30 ERVLIFVAERDY--LCPAGKNYYEELKKRGWKGRVELVEHL 68 (110)
Q Consensus 30 PP~lv~~g~~D~--L~d~~~~~a~~L~~~G~~v~v~~~~~~ 68 (110)
-+.+|++|+.-. -..++..+++.|.+.| ++.+-+..+
T Consensus 35 ~~~ii~sGg~~~~~~~~ea~~m~~~l~~~g--v~~~~I~~e 73 (150)
T cd06259 35 APKLIVSGGQGPGEGYSEAEAMARYLIELG--VPAEAILLE 73 (150)
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHcC--CCHHHeeec
Confidence 477777777554 5789999999999999 765444433
No 254
>PLN02530 histidine-tRNA ligase
Probab=27.77 E-value=94 Score=24.97 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=24.2
Q ss_pred EEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEe
Q 043546 32 VLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEH 67 (110)
Q Consensus 32 ~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~ 67 (110)
++|+.-+ +-..+.+.+.+++|++.| ..|++...
T Consensus 404 VlVi~~~-~~~~~~A~~ia~~LR~~G--i~vevd~~ 436 (487)
T PLN02530 404 DVVFALD-EDLQGAAAGVASRLREKG--RSVDLVLE 436 (487)
T ss_pred EEEEEcC-hHHHHHHHHHHHHHHHCC--CeEEEecC
Confidence 4444434 456788999999999999 77876543
No 255
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=27.70 E-value=2.5e+02 Score=20.68 Aligned_cols=61 Identities=20% Similarity=0.081 Sum_probs=36.1
Q ss_pred cEEEEecCCCccchHHHHHHHHHHhcC-CcccEEEEE-eCCCceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKKRG-WKGRVELVE-HLDEKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~~G-~~v~v~~~~-~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
|+.+.+++.++ ++-.+.+++++++| .. -+|+.. .|...||-..+.. ..+.+.++++.+++.
T Consensus 93 p~i~si~g~~~--~~~~~~a~~~~~aG~~D-~iElN~~cP~~~~gg~~~~~----~~~~~~eiv~~vr~~ 155 (301)
T PRK07259 93 PIIANVAGSTE--EEYAEVAEKLSKAPNVD-AIELNISCPNVKHGGMAFGT----DPELAYEVVKAVKEV 155 (301)
T ss_pred cEEEEeccCCH--HHHHHHHHHHhccCCcC-EEEEECCCCCCCCCcccccc----CHHHHHHHHHHHHHh
Confidence 78899988885 77888899999987 42 355543 2333442111111 124556666666654
No 256
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=27.58 E-value=83 Score=23.34 Aligned_cols=24 Identities=13% Similarity=0.176 Sum_probs=20.6
Q ss_pred chHHHHHHHHHHhcCCcccEEEEEeC
Q 043546 43 CPAGKNYYEELKKRGWKGRVELVEHL 68 (110)
Q Consensus 43 ~d~~~~~a~~L~~~G~~v~v~~~~~~ 68 (110)
.....++++++++.| +..++.+|.
T Consensus 125 ~~~~~~~~~~~~e~G--i~pe~ev~d 148 (272)
T PF05853_consen 125 PADARELARRMRERG--IKPEIEVFD 148 (272)
T ss_dssp HHHHHHHHHHHHHTT---EEEEEESS
T ss_pred HHHHHHHHHHHHHcC--CeEEEEEEc
Confidence 567889999999999 899999987
No 257
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=27.48 E-value=1.7e+02 Score=22.79 Aligned_cols=43 Identities=19% Similarity=0.180 Sum_probs=28.5
Q ss_pred cEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecC
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRN 78 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~ 78 (110)
-+++++|++|-.... .-...|++. | ..+|+...+| +|.-..+.
T Consensus 291 ~ii~V~A~~DaYVPr--~~v~~Lq~~-W-PGsEvR~l~g-GHVsA~L~ 333 (348)
T PF09752_consen 291 AIIFVAAKNDAYVPR--HGVLSLQEI-W-PGSEVRYLPG-GHVSAYLL 333 (348)
T ss_pred cEEEEEecCceEech--hhcchHHHh-C-CCCeEEEecC-CcEEEeee
Confidence 467888899965422 222377777 5 4688888888 99755543
No 258
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=27.35 E-value=1.1e+02 Score=24.32 Aligned_cols=55 Identities=9% Similarity=0.141 Sum_probs=32.5
Q ss_pred cEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeC-CCceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHL-DEKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~-g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
|+|.+.++.|++..... .+.+...+ .+=+...++ +..|. --.+++..+.+||...
T Consensus 354 plL~i~~~~D~v~P~eD--~~lia~~s--~~gk~~~~~~~~~~~---------gy~~al~~~~~Wl~~~ 409 (411)
T PF06500_consen 354 PLLAINGEDDPVSPIED--SRLIAESS--TDGKALRIPSKPLHM---------GYPQALDEIYKWLEDK 409 (411)
T ss_dssp -EEEEEETT-SSS-HHH--HHHHHHTB--TT-EEEEE-SSSHHH---------HHHHHHHHHHHHHHHH
T ss_pred ceEEeecCCCCCCCHHH--HHHHHhcC--CCCceeecCCCcccc---------chHHHHHHHHHHHHHh
Confidence 99999999999974433 35555565 444555555 33341 1236788899998764
No 259
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=27.34 E-value=1.3e+02 Score=19.81 Aligned_cols=30 Identities=7% Similarity=0.028 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCCcccEEEEEeCCCceeeeec
Q 043546 45 AGKNYYEELKKRGWKGRVELVEHLDEKHVFYLR 77 (110)
Q Consensus 45 ~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~ 77 (110)
|..+|++.|+++| +++ +.++-++.||+..+
T Consensus 1 D~~~~~~~lk~~~--v~s-i~i~a~~h~g~ayY 30 (132)
T PF14871_consen 1 DPEQFVDTLKEAH--VNS-ITIFAKCHGGYAYY 30 (132)
T ss_pred CHHHHHHHHHHhC--CCE-EEEEcccccEEEEc
Confidence 4678999999999 554 45667777776554
No 260
>PRK01310 hypothetical protein; Validated
Probab=27.33 E-value=60 Score=20.75 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHhhhCCccchhh
Q 043546 82 TNALELTNKFISFIKQNNGSLRSSIE 107 (110)
Q Consensus 82 ~~a~~~~~~i~~fl~~~~~~~~~~~~ 107 (110)
|.--++.+.+.+||.+..+-++|+|+
T Consensus 48 Pv~GkAN~ali~~LA~~l~v~ks~I~ 73 (104)
T PRK01310 48 PEGGEANRALIELLAKALGVPKSSVR 73 (104)
T ss_pred CCCChHHHHHHHHHHHHhCCChhhEE
Confidence 34447788999999999998888875
No 261
>COG3347 Uncharacterized conserved protein [Function unknown]
Probab=27.13 E-value=1.8e+02 Score=23.17 Aligned_cols=45 Identities=20% Similarity=0.189 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 46 GKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 46 ~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
+...++++++.. .++..+.+ -||...+ .+.++++++.++.++++.
T Consensus 170 a~~iae~~~~~p---~~~glvL~--~HGL~t~---gdtak~~Ye~~I~~V~~A 214 (404)
T COG3347 170 AKAIAERFKANP---DAEGLVLE--NHGLFTF---GDTAKEAYERMISIVNEA 214 (404)
T ss_pred HHHHHHHHhhCC---CceEEEec--cccceEe---cccHHHHHHHHHHHHHHH
Confidence 445555665543 46666664 4776554 456788888888887765
No 262
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=26.91 E-value=1.2e+02 Score=23.33 Aligned_cols=40 Identities=15% Similarity=0.132 Sum_probs=29.4
Q ss_pred cEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCce
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKH 72 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H 72 (110)
..-|++.|--|.....+..+..|.+.| ++|++..-..+.|
T Consensus 170 ~f~V~v~EsRP~~qG~rlta~eL~~~G--I~vtlI~Dsa~~~ 209 (329)
T PRK06371 170 NIFVFVDETRPRLQGARLTAWELAQEG--IDHAIIADNAAGY 209 (329)
T ss_pred eeEEEECCCCCcchHHHHHHHHHHHCC--CCEEEEcccHHHH
Confidence 345677777787655566799999999 9999886655554
No 263
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=26.84 E-value=1.2e+02 Score=22.67 Aligned_cols=38 Identities=16% Similarity=0.103 Sum_probs=28.7
Q ss_pred EEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCce
Q 043546 32 VLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKH 72 (110)
Q Consensus 32 ~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H 72 (110)
.-|++.|--|.. +|.++++.|.+.| ++|++..-..+.|
T Consensus 136 ~~V~v~EsrP~~-qG~~la~eL~~~G--I~vtlI~Dsa~~~ 173 (275)
T PRK08335 136 FKVILTESAPDY-EGLALANELEFLG--IEFEVITDAQLGL 173 (275)
T ss_pred eEEEEecCCCch-hHHHHHHHHHHCC--CCEEEEeccHHHH
Confidence 346677777764 6777799999999 9999877665544
No 264
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=26.65 E-value=1.3e+02 Score=21.83 Aligned_cols=40 Identities=30% Similarity=0.230 Sum_probs=30.0
Q ss_pred cccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCC
Q 043546 24 LARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLD 69 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g 69 (110)
+++++.+..++..-+.| .+..+.+.|++.| +++......+
T Consensus 45 l~~lg~~~~~i~~vG~D----~g~~i~~~l~~~g--I~~~~i~~~~ 84 (303)
T TIGR03168 45 LARLGAEVVATGFLGGF----TGEFIEALLAEEG--IKNDFVEVKG 84 (303)
T ss_pred HHHcCCCeEEEEEeCCc----hhHHHHHHHHHcC--CCceEEECCC
Confidence 55677777777666656 3788999999999 8887776653
No 265
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function. Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.
Probab=26.34 E-value=41 Score=20.23 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhhhCCccchhh
Q 043546 85 LELTNKFISFIKQNNGSLRSSIE 107 (110)
Q Consensus 85 ~~~~~~i~~fl~~~~~~~~~~~~ 107 (110)
-++.+.+++||.+..+-++|.|+
T Consensus 39 GkAN~ali~~La~~l~v~ks~i~ 61 (77)
T PF02594_consen 39 GKANKALIRFLAKALGVPKSDIE 61 (77)
T ss_dssp CCHHHHHHHHHHHHCT--TTCEE
T ss_pred ChhHHHHHHHHHHHhCCCcccEE
Confidence 36778899999999888888875
No 266
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=26.27 E-value=1.1e+02 Score=24.15 Aligned_cols=33 Identities=21% Similarity=0.044 Sum_probs=24.1
Q ss_pred EEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEe
Q 043546 32 VLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEH 67 (110)
Q Consensus 32 ~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~ 67 (110)
++|+.-+ +.....+.+++++|+++| ..|++...
T Consensus 328 v~v~~~~-~~~~~~a~~ia~~LR~~G--i~veid~~ 360 (430)
T CHL00201 328 VYIATQG-LKAQKKGWEIIQFLEKQN--IKFELDLS 360 (430)
T ss_pred EEEEEcC-HHHHHHHHHHHHHHHhCC--CeEEEeeC
Confidence 4555433 445788999999999999 77877543
No 267
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=26.23 E-value=1e+02 Score=23.11 Aligned_cols=32 Identities=22% Similarity=0.123 Sum_probs=25.0
Q ss_pred cchHHHHHHHHHHh-cCCcccEEEEEeCCCceeee
Q 043546 42 LCPAGKNYYEELKK-RGWKGRVELVEHLDEKHVFY 75 (110)
Q Consensus 42 L~d~~~~~a~~L~~-~G~~v~v~~~~~~g~~H~f~ 75 (110)
...+..+..+.+++ .| ..+.+.++++..|+=.
T Consensus 214 ~~~~~~~~~~~~~~~~g--~~~~f~~~~~~~H~~~ 246 (264)
T COG2819 214 NKQEAAELSSLLEKRTG--ARLVFQEEPLEHHGSV 246 (264)
T ss_pred HHHHHHHHHHHHhhccC--CceEecccccccccch
Confidence 35566666777777 88 8899999999999743
No 268
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=26.14 E-value=2.5e+02 Score=20.18 Aligned_cols=40 Identities=15% Similarity=0.027 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHH
Q 043546 46 GKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALEL 87 (110)
Q Consensus 46 ~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~ 87 (110)
+.++.++|.+.| ..+.+.-..+.-||-..--+++.+-+..
T Consensus 40 A~ale~~L~~~G--~~~y~LDGDnvR~gL~~dLgFs~edR~e 79 (197)
T COG0529 40 ANALEEKLFAKG--YHVYLLDGDNVRHGLNRDLGFSREDRIE 79 (197)
T ss_pred HHHHHHHHHHcC--CeEEEecChhHhhcccCCCCCChHHHHH
Confidence 678889999999 8899888888999877554555554433
No 269
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=26.01 E-value=1.1e+02 Score=24.24 Aligned_cols=55 Identities=13% Similarity=0.139 Sum_probs=36.5
Q ss_pred HHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhhhCCccchhh
Q 043546 47 KNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQNNGSLRSSIE 107 (110)
Q Consensus 47 ~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~~~~~~~~~~ 107 (110)
..|...+++.| |++...-..+.+-.-... +-..=.-++..+|+++..+++-+++|
T Consensus 156 ~~fv~~m~~nG--vnlyalSVQNEPd~~p~~----d~~~wtpQe~~rF~~qyl~si~~~~r 210 (433)
T COG5520 156 NDFVLEMKNNG--VNLYALSVQNEPDYAPTY----DWCWWTPQEELRFMRQYLASINAEMR 210 (433)
T ss_pred HHHHHHHHhCC--CceeEEeeccCCcccCCC----CcccccHHHHHHHHHHhhhhhccccE
Confidence 46778889999 888877777666522211 11112236778899999888877665
No 270
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=25.98 E-value=1.6e+02 Score=19.12 Aligned_cols=34 Identities=24% Similarity=0.221 Sum_probs=24.0
Q ss_pred EEEEecCCCc--------cchHHHHHHHHHHhcCCcccEEEEEe
Q 043546 32 VLIFVAERDY--------LCPAGKNYYEELKKRGWKGRVELVEH 67 (110)
Q Consensus 32 ~lv~~g~~D~--------L~d~~~~~a~~L~~~G~~v~v~~~~~ 67 (110)
++|..|.+|. +...-.++.+++++.| .++-+.-.
T Consensus 68 v~i~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~--~~vil~~~ 109 (177)
T cd01822 68 VILELGGNDGLRGIPPDQTRANLRQMIETAQARG--APVLLVGM 109 (177)
T ss_pred EEEeccCcccccCCCHHHHHHHHHHHHHHHHHCC--CeEEEEec
Confidence 5688899996 3455567788888888 66665543
No 271
>PRK00647 hypothetical protein; Validated
Probab=25.88 E-value=66 Score=20.35 Aligned_cols=27 Identities=4% Similarity=0.070 Sum_probs=21.3
Q ss_pred cHHHHHHHHHHHHHHHhhhCCccchhh
Q 043546 81 CTNALELTNKFISFIKQNNGSLRSSIE 107 (110)
Q Consensus 81 ~~~a~~~~~~i~~fl~~~~~~~~~~~~ 107 (110)
.|+--++.+.+++||.+..+-++|.|+
T Consensus 36 pPvdGKAN~ali~~LAk~l~vpks~I~ 62 (96)
T PRK00647 36 VPEKGKANDAVIALLAKFLSLPKRDVT 62 (96)
T ss_pred CCCCChHHHHHHHHHHHHhCCChhhEE
Confidence 344457788899999999988888875
No 272
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=25.81 E-value=1.7e+02 Score=21.73 Aligned_cols=33 Identities=18% Similarity=0.094 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHhcCCcccEEEEEeCC--------CceeeeecC
Q 043546 44 PAGKNYYEELKKRGWKGRVELVEHLD--------EKHVFYLRN 78 (110)
Q Consensus 44 d~~~~~a~~L~~~G~~v~v~~~~~~g--------~~H~f~~~~ 78 (110)
...+.|.+.|++.= --||+.+|+| ..||+.+..
T Consensus 30 ss~e~y~~aL~~Gc--RcvElD~wdg~~~~~eP~v~Hg~t~t~ 70 (258)
T cd08625 30 SSVEMYRQVLLTGC--RCIELDCWKGRPPEEEPFITHGFTMTT 70 (258)
T ss_pred cCHHHHHHHHHcCC--CEEEEEecCCCCCCCCCEEeeCCcccc
Confidence 44788999997443 4579999998 368765443
No 273
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=25.79 E-value=61 Score=24.71 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=29.4
Q ss_pred HHHHHHhcCCcccEEEEEeCCCceeee--ecCCCcHHHHHHHHHHHHHH
Q 043546 49 YYEELKKRGWKGRVELVEHLDEKHVFY--LRNPTCTNALELTNKFISFI 95 (110)
Q Consensus 49 ~a~~L~~~G~~v~v~~~~~~g~~H~f~--~~~~~~~~a~~~~~~i~~fl 95 (110)
.-+++.++| |.|.-.--++.-||=. +|.|+...+-...+.|+.-+
T Consensus 61 ~w~~vedAG--V~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Iarei~~hv 107 (340)
T COG4007 61 HWKRVEDAG--VEVVSDDAEAAEHGEIHVLFTPFGKATFGIAREILEHV 107 (340)
T ss_pred HHHHHHhcC--cEEecCchhhhhcceEEEEecccchhhHHHHHHHHhhC
Confidence 457899999 8888888888777733 34555544444445554443
No 274
>PRK01530 hypothetical protein; Reviewed
Probab=25.73 E-value=64 Score=20.71 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhhhCCccchhh
Q 043546 82 TNALELTNKFISFIKQNNGSLRSSIE 107 (110)
Q Consensus 82 ~~a~~~~~~i~~fl~~~~~~~~~~~~ 107 (110)
|+--++.+++++||.+..+-++|+|+
T Consensus 49 PvdGkAN~ali~~LAk~l~v~ks~I~ 74 (105)
T PRK01530 49 PEQGKANEEIINYLAKEWKLSRSNIE 74 (105)
T ss_pred CCCChHHHHHHHHHHHHhCCChhhEE
Confidence 34457788899999999998888875
No 275
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=25.70 E-value=75 Score=20.02 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=19.6
Q ss_pred cEEEEecCCCccchHHHHHHHHHHhcCCcccEEEE
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELV 65 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~ 65 (110)
|=+|+.|......--..+..+.|++.| +.|+..
T Consensus 54 pe~liiGtG~~~~~~~~~~~~~l~~~G--I~ve~m 86 (110)
T PF04430_consen 54 PEVLIIGTGKRQLFLPPELREYLRKKG--IGVEVM 86 (110)
T ss_dssp -SEEEEEETTS-SECTHHHHHHHHTTT---EEEEE
T ss_pred CcEEEEccCCccccCCHHHHHHHHHcC--CeEEEE
Confidence 445555554445444566778899999 777754
No 276
>PRK13604 luxD acyl transferase; Provisional
Probab=25.61 E-value=3.1e+02 Score=20.94 Aligned_cols=62 Identities=10% Similarity=-0.051 Sum_probs=35.7
Q ss_pred cEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCce-e-----eeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKH-V-----FYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H-~-----f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
+++|++.+.-.-++....+|+.|.+.| ..|- .|.--.| | |..+ ......+-+..+++|+++.
T Consensus 38 ~~vIi~HGf~~~~~~~~~~A~~La~~G--~~vL--rfD~rg~~GeS~G~~~~~--t~s~g~~Dl~aaid~lk~~ 105 (307)
T PRK13604 38 NTILIASGFARRMDHFAGLAEYLSSNG--FHVI--RYDSLHHVGLSSGTIDEF--TMSIGKNSLLTVVDWLNTR 105 (307)
T ss_pred CEEEEeCCCCCChHHHHHHHHHHHHCC--CEEE--EecCCCCCCCCCCccccC--cccccHHHHHHHHHHHHhc
Confidence 556665555555667999999999999 4343 3332222 1 1101 1111245567778888764
No 277
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=25.55 E-value=2.9e+02 Score=22.83 Aligned_cols=68 Identities=16% Similarity=0.154 Sum_probs=43.2
Q ss_pred CcEEEEecCCCcc-----chHHHHHHHHHHhcCCcccEEEEEeC--CCceeeeecCC---CcHHHHHHHHHHHHHHHhhh
Q 043546 30 ERVLIFVAERDYL-----CPAGKNYYEELKKRGWKGRVELVEHL--DEKHVFYLRNP---TCTNALELTNKFISFIKQNN 99 (110)
Q Consensus 30 PP~lv~~g~~D~L-----~d~~~~~a~~L~~~G~~v~v~~~~~~--g~~H~f~~~~~---~~~~a~~~~~~i~~fl~~~~ 99 (110)
-|.+++.|+.-+. +-++..+.+..++-| ..|-..+.. |..|-+..... ..-..++++.+++.||+..+
T Consensus 86 gPiFLmIGGEgp~~~~wv~~~~~~~~~~Akkfg--A~v~~lEHRFYG~S~P~~~~st~nlk~LSs~QALaDla~fI~~~n 163 (514)
T KOG2182|consen 86 GPIFLMIGGEGPESDKWVGNENLTWLQWAKKFG--ATVFQLEHRFYGQSSPIGDLSTSNLKYLSSLQALADLAEFIKAMN 163 (514)
T ss_pred CceEEEEcCCCCCCCCccccCcchHHHHHHHhC--CeeEEeeeeccccCCCCCCCcccchhhhhHHHHHHHHHHHHHHHH
Confidence 3888888876654 567778888888888 444333322 55554443321 22346788899999988763
No 278
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=25.49 E-value=1.8e+02 Score=19.57 Aligned_cols=28 Identities=18% Similarity=0.031 Sum_probs=22.1
Q ss_pred CcEEEEecCCCccchHHHHHHHHHHhcC
Q 043546 30 ERVLIFVAERDYLCPAGKNYYEELKKRG 57 (110)
Q Consensus 30 PP~lv~~g~~D~L~d~~~~~a~~L~~~G 57 (110)
|....+.|.+|+|+..-..+-++.++.|
T Consensus 2 ~~rV~~~G~FDl~H~GHi~~L~~A~~lg 29 (150)
T cd02174 2 PVRVYVDGCFDLFHYGHANALRQAKKLG 29 (150)
T ss_pred CeEEEEeCccCCCCHHHHHHHHHHHHhC
Confidence 4556788889999888888888877776
No 279
>PF00542 Ribosomal_L12: Ribosomal protein L7/L12 C-terminal domain; InterPro: IPR013823 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents the C-terminal domain of the large subunit ribosomal proteins, known as the L7/L12 family. L7/L12 is present in each 50S subunit in four copies organised as two dimers. The L8 protein complex consisting of two dimers of L7/L12 and L10 in Escherichia coli ribosomes is assembled on the conserved region of 23 S rRNA termed the GTPase-associated domain []. The L7/L12 dimer probably interacts with EF-Tu. L7 and L12 only differ in a single post translational modification of the addition of an acetyl group to the N terminus of L7.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1DD4_B 1DD3_A 1RQU_B 2GYA_5 2GYC_5 1RQS_A 1RQV_A 1CTF_A 2XUX_L.
Probab=25.49 E-value=90 Score=18.26 Aligned_cols=29 Identities=21% Similarity=0.222 Sum_probs=20.5
Q ss_pred cEEEEecCCCccchHHHHHHHHHHhcCCcccEEE
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKKRGWKGRVEL 64 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~ 64 (110)
|..|..+ .=.+++.++.++|.++| ..|++
T Consensus 39 p~~ik~~---v~keeAe~ik~~Le~aG--a~v~l 67 (68)
T PF00542_consen 39 PKVIKEG---VSKEEAEEIKKKLEAAG--AKVEL 67 (68)
T ss_dssp TEEEEEE---E-HHHHHHHHHHHHCCT---EEEE
T ss_pred CHHHHcC---CCHHHHHHHHHHHHHcC--CEEEe
Confidence 4444433 44789999999999999 77775
No 280
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=25.46 E-value=2.8e+02 Score=20.45 Aligned_cols=68 Identities=10% Similarity=0.032 Sum_probs=38.6
Q ss_pred cccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhhhC
Q 043546 24 LARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQNNG 100 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~~~ 100 (110)
|...+++.|+.++|.. .+..-...+++.+.| -++-.+ |..|-.. ..-..++.++-+.+..+.|.+..+
T Consensus 37 L~~~gikATFFv~g~~---~e~~p~lir~i~~~G--hEIgsH---g~sH~~l-~~ls~ee~~~eI~~s~~~Le~itG 104 (265)
T TIGR03006 37 LDRHGVKATFFTLGWV---AERYPELVRRIVAAG--HELASH---GYGHERV-TTQTPEAFRADIRRSKALLEDLSG 104 (265)
T ss_pred HHHcCCcEEEEEeccc---hhhCHHHHHHHHHcC--CEeeec---cccCcCc-hhCCHHHHHHHHHHHHHHHHHHhC
Confidence 4445668899888864 333456789999999 555443 3334211 111223345555666666666533
No 281
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=25.32 E-value=1.1e+02 Score=19.37 Aligned_cols=34 Identities=18% Similarity=0.161 Sum_probs=22.1
Q ss_pred CcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEE
Q 043546 30 ERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELV 65 (110)
Q Consensus 30 PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~ 65 (110)
.|-+|+.|......--..+..+.|++.| +.++..
T Consensus 52 ~peiliiGTG~~~~~~~~~~~~~l~~~g--i~vE~m 85 (109)
T cd05560 52 QPEVILLGTGERQRFPPPALLAPLLARG--IGVEVM 85 (109)
T ss_pred CCCEEEEecCCCCCcCCHHHHHHHHHcC--CeEEEE
Confidence 4566666666643323566778899999 667643
No 282
>PRK05765 precorrin-3B C17-methyltransferase; Provisional
Probab=25.27 E-value=1.3e+02 Score=21.76 Aligned_cols=37 Identities=14% Similarity=0.025 Sum_probs=27.5
Q ss_pred cEEEEecCCCcc-chHHHHHHHHHHhcCCcccEEEEEeCCC
Q 043546 31 RVLIFVAERDYL-CPAGKNYYEELKKRGWKGRVELVEHLDE 70 (110)
Q Consensus 31 P~lv~~g~~D~L-~d~~~~~a~~L~~~G~~v~v~~~~~~g~ 70 (110)
.+.+++. .||+ .+.+....+.|++.| .++++.+.||.
T Consensus 74 ~Vv~l~~-GDP~i~~~~~~~~~~l~~~~--~~~~veviPGi 111 (246)
T PRK05765 74 IVALVSS-GDPQVYGMAGLVFELISRRK--LDVDVEVIPGV 111 (246)
T ss_pred cEEEEeC-CCchhhhhHHHHHHHHHhcC--CCCCEEEeCCH
Confidence 4455555 5985 577888899999998 66677788876
No 283
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=25.03 E-value=1.1e+02 Score=22.28 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=27.9
Q ss_pred CcEEEEecCCCccchHHHHHHHHHHh----cCCcccEEEEEeCCCceee
Q 043546 30 ERVLIFVAERDYLCPAGKNYYEELKK----RGWKGRVELVEHLDEKHVF 74 (110)
Q Consensus 30 PP~lv~~g~~D~L~d~~~~~a~~L~~----~G~~v~v~~~~~~g~~H~f 74 (110)
+++.+.-|..|-=. +..+.+.|.+ .+ .++...+ +|..|+|
T Consensus 222 ~kl~f~fg~~D~Wv--p~~~~~~l~~~~~~~~--~~~~v~~-~~i~HaF 265 (266)
T PF10230_consen 222 DKLWFYFGQNDHWV--PNETRDELIERYPGHE--PDVVVDE-EGIPHAF 265 (266)
T ss_pred CEEEEEEeCCCCCC--CHHHHHHHHHHcCCCC--CeEEEec-CCCCCCC
Confidence 68899999999765 3334444433 23 4677777 9999998
No 284
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=24.96 E-value=1.3e+02 Score=17.85 Aligned_cols=26 Identities=15% Similarity=0.060 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhcCCcccEEEEEeCCCceee
Q 043546 45 AGKNYYEELKKRGWKGRVELVEHLDEKHVF 74 (110)
Q Consensus 45 ~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f 74 (110)
.+...++.|++.| .+ ...+.|...+|
T Consensus 73 rs~~aa~~L~~~G--~~--~~~l~GG~~~W 98 (100)
T cd01523 73 SSQFVAELLAERG--YD--VDYLAGGMKAW 98 (100)
T ss_pred cHHHHHHHHHHcC--ce--eEEeCCcHHhh
Confidence 4788899999999 55 44556655443
No 285
>PF06850 PHB_depo_C: PHB de-polymerase C-terminus; InterPro: IPR009656 This entry represents the C terminus of bacterial poly(3-hydroxybutyrate) (PHB) de-polymerase. This degrades PHB granules to oligomers and monomers of 3-hydroxy-butyric acid.
Probab=24.95 E-value=2.7e+02 Score=20.11 Aligned_cols=65 Identities=20% Similarity=0.140 Sum_probs=40.5
Q ss_pred CcEEEEecCCCccchHHHHHHHHHHhcCCccc---EEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 30 ERVLIFVAERDYLCPAGKNYYEELKKRGWKGR---VELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 30 PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~---v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
.+.+-+-||.|-+.--+...|..=--.| .+ -..++-+|++| +-+|... .=..+..-.+.+||+++
T Consensus 135 taLlTVEGe~DDIsg~GQT~AA~~LC~g--lp~~~k~~~~~~g~GH-YGlF~G~-rwr~~I~P~i~~fi~~~ 202 (202)
T PF06850_consen 135 TALLTVEGERDDISGPGQTHAAHDLCTG--LPADMKRHHLQPGVGH-YGLFNGS-RWREEIYPRIREFIRQH 202 (202)
T ss_pred ceeEEeecCcccCCcchHHHHHHHHhcC--CCHHHhhhcccCCCCe-eecccch-hhhhhhhHHHHHHHHhC
Confidence 4778899999988655554443322334 32 35677889999 6666541 22335566677887653
No 286
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=24.86 E-value=1e+02 Score=26.28 Aligned_cols=32 Identities=19% Similarity=0.071 Sum_probs=25.4
Q ss_pred EEecCCCccchHHHHHHHHHHhcCCcccEEEEEe
Q 043546 34 IFVAERDYLCPAGKNYYEELKKRGWKGRVELVEH 67 (110)
Q Consensus 34 v~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~ 67 (110)
=+.+=.|++|+++.+.-++|+++| +.|...--
T Consensus 435 Gli~l~Dp~R~~a~~aI~~l~~aG--I~v~miTG 466 (755)
T TIGR01647 435 GLLPLFDPPRHDTKETIERARHLG--VEVKMVTG 466 (755)
T ss_pred EEeeccCCChhhHHHHHHHHHHCC--CeEEEECC
Confidence 344556899999999999999999 77765443
No 287
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=24.86 E-value=1e+02 Score=18.64 Aligned_cols=18 Identities=11% Similarity=-0.095 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHhcCCcccEE
Q 043546 44 PAGKNYYEELKKRGWKGRVE 63 (110)
Q Consensus 44 d~~~~~a~~L~~~G~~v~v~ 63 (110)
++-.++.++|++.| +++.
T Consensus 72 ~dv~~~~~~l~~~g--~~~~ 89 (121)
T cd07266 72 EDLDKAEAFFQELG--LPTE 89 (121)
T ss_pred HHHHHHHHHHHHcC--CCcc
Confidence 67788999999999 6664
No 288
>cd08516 PBP2_NikA_DppA_OppA_like_11 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most s
Probab=24.83 E-value=1.5e+02 Score=22.82 Aligned_cols=34 Identities=12% Similarity=0.073 Sum_probs=24.1
Q ss_pred EEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeC
Q 043546 33 LIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHL 68 (110)
Q Consensus 33 lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~ 68 (110)
+++..+.......+..+.+.|++.| ++|++...+
T Consensus 322 l~~~~~~~~~~~~a~~i~~~l~~~G--i~v~~~~~~ 355 (457)
T cd08516 322 ILVTSQYGMHVDTAQVIQAQLAAIG--INVEIELVE 355 (457)
T ss_pred EEeCCCCccHHHHHHHHHHHHHHcC--ceEEEEEec
Confidence 3333333356677888999999999 888877654
No 289
>PRK10466 hybD hydrogenase 2 maturation endopeptidase; Provisional
Probab=24.75 E-value=72 Score=21.63 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=18.2
Q ss_pred cEEEEecCCCccchHH--HHHHHHHHhc
Q 043546 31 RVLIFVAERDYLCPAG--KNYYEELKKR 56 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~--~~~a~~L~~~ 56 (110)
+++|+.-++..+.||+ ...+++|++.
T Consensus 2 ~ilVlGiGN~l~gDDGvG~~va~~L~~~ 29 (164)
T PRK10466 2 RILVLGVGNILLTDEAIGVRIVEALEQR 29 (164)
T ss_pred ceEEEEECchhhccCcHHHHHHHHHHHh
Confidence 5677777777778874 4677777653
No 290
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=24.49 E-value=2.2e+02 Score=20.33 Aligned_cols=37 Identities=32% Similarity=0.454 Sum_probs=28.3
Q ss_pred cccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEE
Q 043546 24 LARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELV 65 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~ 65 (110)
++.++.+..++..-+.|.+ +..+.+.|++.| +++.+.
T Consensus 46 l~~lG~~~~~~~~vG~D~~---g~~i~~~l~~~g--i~~~~~ 82 (292)
T cd01174 46 AARLGARVAMIGAVGDDAF---GDELLENLREEG--IDVSYV 82 (292)
T ss_pred HHHcCCceEEEEEEcCCcc---HHHHHHHHHHcC--CCceEE
Confidence 5567777778777777765 466778899999 888776
No 291
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=24.28 E-value=1.1e+02 Score=22.61 Aligned_cols=32 Identities=25% Similarity=0.162 Sum_probs=25.1
Q ss_pred ecCCCcc--chHHHHHHHHHHhcCCcccEEEEEeCC
Q 043546 36 VAERDYL--CPAGKNYYEELKKRGWKGRVELVEHLD 69 (110)
Q Consensus 36 ~g~~D~L--~d~~~~~a~~L~~~G~~v~v~~~~~~g 69 (110)
=|+.|+. .+--..+.++|++.| .+|.+.+-++
T Consensus 101 egGlD~~~~~~~l~~~v~~L~~~G--irVSLFiD~d 134 (243)
T COG0854 101 EGGLDVAGQLDKLRDAVRRLKNAG--IRVSLFIDPD 134 (243)
T ss_pred ccchhhhhhhhhHHHHHHHHHhCC--CeEEEEeCCC
Confidence 4667776 666778889999999 8899887664
No 292
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=24.24 E-value=1.2e+02 Score=24.99 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=23.5
Q ss_pred EEecCCCccchHHHHHHHHHHhcCCcccEEEEE
Q 043546 34 IFVAERDYLCPAGKNYYEELKKRGWKGRVELVE 66 (110)
Q Consensus 34 v~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~ 66 (110)
+++.-.|...+.+.+.+++|+++| ..|++..
T Consensus 442 ~Iipi~e~~~~~A~~Ia~~LR~~G--irVelD~ 472 (545)
T PRK14799 442 RVLPITDEVNEYAEKVLNDMRKRR--IRAEIDY 472 (545)
T ss_pred EEEEcCHHHHHHHHHHHHHHHhCC--CEEEEEC
Confidence 333334567889999999999999 7788754
No 293
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=24.21 E-value=1.4e+02 Score=25.11 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=23.2
Q ss_pred CcEEEEecCCCccchHHHHHHHHHHhcC
Q 043546 30 ERVLIFVAERDYLCPAGKNYYEELKKRG 57 (110)
Q Consensus 30 PP~lv~~g~~D~L~d~~~~~a~~L~~~G 57 (110)
+++.|+++..+.-.+.+...++.|+++|
T Consensus 547 a~i~viCssD~~Y~~~a~~~~~al~~ag 574 (619)
T TIGR00642 547 AQVAVLCSSDKVYAQQGLEVAKALKAAG 574 (619)
T ss_pred CCEEEEeCCCcchHHHHHHHHHHHHhCC
Confidence 4666777776677888999999999999
No 294
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=24.11 E-value=80 Score=22.85 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=19.2
Q ss_pred chHHHHHHHHHHhcCCcccEEEEEeCCCc
Q 043546 43 CPAGKNYYEELKKRGWKGRVELVEHLDEK 71 (110)
Q Consensus 43 ~d~~~~~a~~L~~~G~~v~v~~~~~~g~~ 71 (110)
..--+.||+.|++.| .+|.++.+....
T Consensus 48 ~saMRhfa~~L~~~G--~~V~Y~~~~~~~ 74 (224)
T PF04244_consen 48 FSAMRHFADELRAKG--FRVHYIELDDPE 74 (224)
T ss_dssp HHHHHHHHHHHHHTT----EEEE-TT-TT
T ss_pred HHHHHHHHHHHHhCC--CEEEEEeCCCcc
Confidence 455678999999999 789999998644
No 295
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=24.03 E-value=1.5e+02 Score=22.90 Aligned_cols=41 Identities=17% Similarity=0.073 Sum_probs=30.8
Q ss_pred cEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCcee
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHV 73 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~ 73 (110)
..-|++.|--|.....+..+..|.+.| ++|++..-..+.|.
T Consensus 181 ~~~V~v~EtRP~~qG~rlta~eL~~~G--I~vtlI~Dsa~~~~ 221 (339)
T PRK06036 181 EIKVIACETRPLNQGSRLTTWELMQDN--IPVTLITDSMAGIV 221 (339)
T ss_pred ceEEEEcCCCchhhHHHHHHHHHHHcC--CCEEEEehhHHHHH
Confidence 456778888887655555689999999 99998876655553
No 296
>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]
Probab=24.03 E-value=3.2e+02 Score=22.41 Aligned_cols=65 Identities=14% Similarity=0.185 Sum_probs=40.9
Q ss_pred EEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCC-CcHHHHHHHHHHHHHHHhhhCCc
Q 043546 33 LIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNP-TCTNALELTNKFISFIKQNNGSL 102 (110)
Q Consensus 33 lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~-~~~~a~~~~~~i~~fl~~~~~~~ 102 (110)
++..+..+ -+.-++++.|++-||. +--..+|...|-...... ...-|.+++.++.+-+.+..+.+
T Consensus 386 ~~~~~s~~---~~i~elsd~l~~~GW~--lnalq~P~a~Hi~vt~~~~~~~~A~~~v~Di~~~~~el~~~p 451 (491)
T KOG1383|consen 386 FILFGSND---VNIFELSDLLRKKGWI--LNALQFPAAIHICVTRVHAREDVADRFVADIRKVVEELKSLP 451 (491)
T ss_pred EEEccCCc---cchhhhhHHHHhcCcC--ccccCCCCceEEEEEeeeccHHHHHHHHHHHHHHHHHHHhCC
Confidence 34445555 5567899999999986 556678889995443322 22225777766665555544433
No 297
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=24.01 E-value=2e+02 Score=19.52 Aligned_cols=32 Identities=19% Similarity=0.217 Sum_probs=23.1
Q ss_pred EEEEecCCCccc--------hHHHHHHHHHHhcCCcccEEEE
Q 043546 32 VLIFVAERDYLC--------PAGKNYYEELKKRGWKGRVELV 65 (110)
Q Consensus 32 ~lv~~g~~D~L~--------d~~~~~a~~L~~~G~~v~v~~~ 65 (110)
++|+.|.+|.++ +.-..+.+++++.| ..+-+.
T Consensus 75 Vii~~GtND~~~~~~~~~~~~~l~~li~~~~~~~--~~~ill 114 (191)
T PRK10528 75 VLVELGGNDGLRGFPPQQTEQTLRQIIQDVKAAN--AQPLLM 114 (191)
T ss_pred EEEEeccCcCccCCCHHHHHHHHHHHHHHHHHcC--CCEEEE
Confidence 578899999754 55567778888888 655443
No 298
>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=23.77 E-value=86 Score=23.12 Aligned_cols=29 Identities=14% Similarity=0.205 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCCcccEEEEEeCCCceeee
Q 043546 45 AGKNYYEELKKRGWKGRVELVEHLDEKHVFY 75 (110)
Q Consensus 45 ~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~ 75 (110)
=+.+.++.|++.| +++....--+.+||..
T Consensus 92 LA~~i~~~l~~~g--~~~~~~~~~~lDHG~~ 120 (268)
T cd07367 92 FARAFVRQAAEDG--FDLAQAEELRPDHGVM 120 (268)
T ss_pred HHHHHHHHHHHcC--CCeeeecCccCCcchh
Confidence 3677788888999 7777665567899854
No 299
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=23.73 E-value=1.6e+02 Score=20.46 Aligned_cols=32 Identities=19% Similarity=0.146 Sum_probs=19.8
Q ss_pred CcEEEE-e-cCCCccchHHHHHHHHHHhcCCcccEE
Q 043546 30 ERVLIF-V-AERDYLCPAGKNYYEELKKRGWKGRVE 63 (110)
Q Consensus 30 PP~lv~-~-g~~D~L~d~~~~~a~~L~~~G~~v~v~ 63 (110)
|.++|+ + |+.+--.++....+++|++.| +.+-
T Consensus 132 ~kvvIllTDg~~~~~~~~~~~~a~~l~~~G--I~i~ 165 (193)
T cd01477 132 KKVVIVFASDYNDEGSNDPRPIAARLKSTG--IAII 165 (193)
T ss_pred CeEEEEEecCccCCCCCCHHHHHHHHHHCC--CEEE
Confidence 564444 4 333322355678899999999 6554
No 300
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=23.66 E-value=1.9e+02 Score=18.18 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=19.9
Q ss_pred cchHHHHHHHHHHhcCCcccEEEEEe
Q 043546 42 LCPAGKNYYEELKKRGWKGRVELVEH 67 (110)
Q Consensus 42 L~d~~~~~a~~L~~~G~~v~v~~~~~ 67 (110)
....+++-++.|++.| +++++.-.
T Consensus 20 ~~~~al~A~~~L~~~G--i~~~vi~~ 43 (124)
T PF02780_consen 20 MVEEALEAAEELEEEG--IKAGVIDL 43 (124)
T ss_dssp HHHHHHHHHHHHHHTT--CEEEEEEE
T ss_pred HHHHHHHHHHHHHHcC--CceeEEee
Confidence 5688999999999999 77876544
No 301
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=23.60 E-value=1.4e+02 Score=21.56 Aligned_cols=42 Identities=26% Similarity=0.256 Sum_probs=30.2
Q ss_pred CcccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCC
Q 043546 23 DLARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLD 69 (110)
Q Consensus 23 ~l~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g 69 (110)
.+++|+.+..++..-+.|.+ +..+.+.|++.| +++.....++
T Consensus 48 ~la~LG~~~~~i~~vG~D~~---g~~i~~~l~~~g--I~~~~~~~~~ 89 (304)
T cd01172 48 NLASLGAKVTLLGVVGDDEA---GDLLRKLLEKEG--IDTDGIVDEG 89 (304)
T ss_pred HHHHhCCCeEEEEEEcCCcc---HHHHHHHHHhCC--CCcceEecCC
Confidence 35667777788877777766 567778888999 7777655554
No 302
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=23.59 E-value=1.6e+02 Score=22.04 Aligned_cols=34 Identities=9% Similarity=-0.009 Sum_probs=28.5
Q ss_pred cEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeC
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHL 68 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~ 68 (110)
|+++-+++... +++.++++..+++| ++.-+..-|
T Consensus 79 pvi~Gv~~~~t--~~ai~~a~~A~~~G--ad~vlv~~P 112 (309)
T cd00952 79 PVFVGATTLNT--RDTIARTRALLDLG--ADGTMLGRP 112 (309)
T ss_pred CEEEEeccCCH--HHHHHHHHHHHHhC--CCEEEECCC
Confidence 77777777666 88999999999999 888887776
No 303
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=23.37 E-value=1.3e+02 Score=20.54 Aligned_cols=37 Identities=16% Similarity=0.115 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHH
Q 043546 46 GKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNA 84 (110)
Q Consensus 46 ~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a 84 (110)
+.++.++|++.| .+|.+.-....-|++..--+...+.
T Consensus 19 A~~L~~~L~~~g--~~~~~LDgD~lR~~l~~dl~fs~~d 55 (156)
T PF01583_consen 19 ARALERRLFARG--IKVYLLDGDNLRHGLNADLGFSKED 55 (156)
T ss_dssp HHHHHHHHHHTT--S-EEEEEHHHHCTTTTTT--SSHHH
T ss_pred HHHHHHHHHHcC--CcEEEecCcchhhccCCCCCCCHHH
Confidence 678899999999 8899988888888765433344443
No 304
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=23.37 E-value=1.8e+02 Score=23.21 Aligned_cols=36 Identities=11% Similarity=0.120 Sum_probs=31.1
Q ss_pred cEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeC
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHL 68 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~ 68 (110)
|+++++|..|.=.+|...+.+.+++.| ++|.+.-.-
T Consensus 2 ~tI~iigT~DTK~~E~~yl~~~i~~~G--~~v~~iDvg 37 (403)
T PF06792_consen 2 KTIAIIGTLDTKGEELLYLRDQIEAQG--VEVLLIDVG 37 (403)
T ss_pred CEEEEEEccCCCHHHHHHHHHHHHHCC--CcEEEEEcC
Confidence 789999999999999999999999999 777665543
No 305
>PF01663 Phosphodiest: Type I phosphodiesterase / nucleotide pyrophosphatase; InterPro: IPR002591 This family consists of phosphodiesterases, including human plasma-cell membrane glycoprotein PC-1 / alkaline phosphodiesterase I / nucleotide pyrophosphatase (nppase). These enzymes catalyse the cleavage of phosphodiester and phosphosulphate bonds in NAD, deoxynucleotides and nucleotide sugars []. Another member of this family is ATX an autotaxin, tumor cell motility-stimulating protein which exhibits type I phosphodiesterases activity []. The alignment encompasses the active site [, ]. Also present within this family is 60 kDa Ca2+-ATPase from Myroides odoratus []. This signature also hits a number of ethanolamine phosphate transferase involved in glycosylphosphatidylinositol-anchor biosynthesis.; GO: 0003824 catalytic activity; PDB: 2XRG_A 2XR9_A 3T02_A 3T01_A 3SZZ_A 3SZY_A 3T00_A 3NKM_A 3NKN_A 3NKR_A ....
Probab=23.36 E-value=1.8e+02 Score=21.35 Aligned_cols=57 Identities=11% Similarity=-0.040 Sum_probs=37.1
Q ss_pred CccchHHHH-HHHH-HHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 40 DYLCPAGKN-YYEE-LKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 40 D~L~d~~~~-~a~~-L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
+...++... +++. +++.. .++-+..+++.+|..+.+.+..++..+++..+-++|.+.
T Consensus 164 ~~~~~~~~~~~~~~l~~~~~--pdl~~~~~~~~D~~~H~~g~~s~~~~~~~~~~D~~ig~l 222 (365)
T PF01663_consen 164 SPELDEWITDAAEYLIQKER--PDLIFVYFPEPDHIGHRYGPDSPEIEDAYRRIDQAIGRL 222 (365)
T ss_dssp SHHHHHHHHHHHHHHHHTTT--ESEEEEEEECCHHHHHHH-TTSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhCC--CCEEEEEecCCCccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 334444444 6666 44445 678899999988877767677777777776665555443
No 306
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=23.30 E-value=1.4e+02 Score=16.27 Aligned_cols=39 Identities=10% Similarity=0.025 Sum_probs=24.1
Q ss_pred cEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceee
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVF 74 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f 74 (110)
|+.|.+.|.++ +.....-+.+..-| ++.-+.++...+.+
T Consensus 1 ~~wI~V~Gf~~--~~~~~vl~~F~~fG---eI~~~~~~~~~~~~ 39 (53)
T PF14605_consen 1 STWISVSGFPP--DLAEEVLEHFASFG---EIVDIYVPESTNWM 39 (53)
T ss_pred CcEEEEEeECc--hHHHHHHHHHHhcC---CEEEEEcCCCCcEE
Confidence 46778888774 33455556777887 56666666444433
No 307
>cd07950 Gallate_Doxase_N The N-terminal domain of the Class III extradiol dioxygenase, Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. In this subfamily, the subunits A and B are fused to make a single polypeptide chain. The dimer interface for this subfamily may resemble the tetramer interface of classical LigAB en
Probab=23.21 E-value=1.1e+02 Score=22.84 Aligned_cols=29 Identities=10% Similarity=0.071 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcCCcccEEEEEeCCCceeee
Q 043546 45 AGKNYYEELKKRGWKGRVELVEHLDEKHVFY 75 (110)
Q Consensus 45 ~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~ 75 (110)
=+...++.+.+.| .++....-.+.+||..
T Consensus 100 LA~~i~~~~~~~g--~~~~~~~~~~lDHG~~ 128 (277)
T cd07950 100 LAQHIAESLVADE--FDLTFFQDKPLDHGCF 128 (277)
T ss_pred HHHHHHHHHHhcC--CCeeeccCCCCCceee
Confidence 3667777888889 7788777778999964
No 308
>COG4422 Bacteriophage protein gp37 [Function unknown]
Probab=23.18 E-value=67 Score=23.17 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=19.0
Q ss_pred EEEecCCCccchHHHHHHHHHHhcC
Q 043546 33 LIFVAERDYLCPAGKNYYEELKKRG 57 (110)
Q Consensus 33 lv~~g~~D~L~d~~~~~a~~L~~~G 57 (110)
-|++++++--. ++.+|+||++.|
T Consensus 21 ti~saGCtnCY--AM~mA~RLeAMg 43 (250)
T COG4422 21 TILSAGCTNCY--AMRMAKRLEAMG 43 (250)
T ss_pred eeccCCcchHH--HHHHHHHHHhhC
Confidence 56777777666 899999999998
No 309
>COG4978 Transcriptional regulator, effector-binding domain/component [Transcription / Signal transduction mechanisms]
Probab=22.81 E-value=1.9e+02 Score=19.63 Aligned_cols=47 Identities=9% Similarity=0.123 Sum_probs=34.5
Q ss_pred ccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhhhCCccchh
Q 043546 60 GRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQNNGSLRSSI 106 (110)
Q Consensus 60 v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~~~~~~~~~ 106 (110)
.++....+|++-=....+....++...+++++..|+.+++..+-+..
T Consensus 80 ~~~~~~~~P~g~~a~~~~~G~~~~~~~~y~rli~~iee~g~~i~g~~ 126 (153)
T COG4978 80 IDIKIKTLPKGKYACIIHKGSYEEVEQAYKRLIEYIEENGLEIIGPS 126 (153)
T ss_pred CcceeEEccCceEEEEEEEcCcccHHHHHHHHHHHHHHhCCcccCce
Confidence 67888899987433344455667888999999999999866554433
No 310
>PLN02908 threonyl-tRNA synthetase
Probab=22.36 E-value=1.2e+02 Score=25.54 Aligned_cols=35 Identities=17% Similarity=0.072 Sum_probs=25.3
Q ss_pred CcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEE
Q 043546 30 ERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVE 66 (110)
Q Consensus 30 PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~ 66 (110)
|.-++++.-.|...+.+.+.+++|+++| ..|++..
T Consensus 589 p~qv~Vipv~~~~~~~A~~va~~LR~~G--i~vevd~ 623 (686)
T PLN02908 589 PRQAIVVPISEKSQDYAEEVRAQLHAAG--FYVDVDV 623 (686)
T ss_pred CceEEEEEECHHHHHHHHHHHHHHHHCC--CEEEEEC
Confidence 3333444444667889999999999999 7787653
No 311
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=22.36 E-value=96 Score=23.02 Aligned_cols=38 Identities=13% Similarity=0.138 Sum_probs=30.3
Q ss_pred CcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCc
Q 043546 30 ERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEK 71 (110)
Q Consensus 30 PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~ 71 (110)
-|.++++--+++++-.-.+|.++++++| |.=.+.|+++
T Consensus 88 ~pivlm~Y~N~i~~~G~e~F~~~~~~aG----vdGlIipDLP 125 (259)
T PF00290_consen 88 IPIVLMTYYNPIFQYGIERFFKEAKEAG----VDGLIIPDLP 125 (259)
T ss_dssp SEEEEEE-HHHHHHH-HHHHHHHHHHHT----EEEEEETTSB
T ss_pred CCEEEEeeccHHhccchHHHHHHHHHcC----CCEEEEcCCC
Confidence 3889999888888877888999999999 6777888875
No 312
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=22.23 E-value=82 Score=19.76 Aligned_cols=25 Identities=24% Similarity=0.074 Sum_probs=13.6
Q ss_pred CcEEEEecCCCccchHHHHHHHHHHhcC
Q 043546 30 ERVLIFVAERDYLCPAGKNYYEELKKRG 57 (110)
Q Consensus 30 PP~lv~~g~~D~L~d~~~~~a~~L~~~G 57 (110)
+++.+.+-|.+|-.+++.+ +|.+.|
T Consensus 31 ~~v~~~~lE~~P~i~~~l~---~l~~~G 55 (103)
T cd03413 31 ANVFVGTVEGYPGLDDVLA---KLKKAG 55 (103)
T ss_pred CcEEEEEEcCCCCHHHHHH---HHHHcC
Confidence 3555666665565544443 455555
No 313
>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.
Probab=22.23 E-value=1e+02 Score=18.52 Aligned_cols=15 Identities=20% Similarity=0.195 Sum_probs=14.1
Q ss_pred chHHHHHHHHHHhcC
Q 043546 43 CPAGKNYYEELKKRG 57 (110)
Q Consensus 43 ~d~~~~~a~~L~~~G 57 (110)
|.++..++++|-+.|
T Consensus 49 r~eAv~lgq~Ll~~g 63 (83)
T cd04449 49 REEAVELGQELMNEG 63 (83)
T ss_pred HHHHHHHHHHHHHCC
Confidence 678999999999999
No 314
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=22.10 E-value=1.2e+02 Score=26.55 Aligned_cols=33 Identities=15% Similarity=0.079 Sum_probs=26.5
Q ss_pred EEEecCCCccchHHHHHHHHHHhcCCcccEEEEEe
Q 043546 33 LIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEH 67 (110)
Q Consensus 33 lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~ 67 (110)
+=+++=.|++|+++.+.-++|+++| +.|...-.
T Consensus 542 lGli~l~Dp~R~~a~~aI~~l~~aG--I~v~miTG 574 (903)
T PRK15122 542 RGFLTFLDPPKESAAPAIAALRENG--VAVKVLTG 574 (903)
T ss_pred EEEEeccCccHHHHHHHHHHHHHCC--CeEEEECC
Confidence 4456667999999999999999999 77665443
No 315
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=22.08 E-value=1.5e+02 Score=24.70 Aligned_cols=31 Identities=19% Similarity=0.168 Sum_probs=23.2
Q ss_pred EEecCCC-ccchHHHHHHHHHHhcCCcccEEEEE
Q 043546 34 IFVAERD-YLCPAGKNYYEELKKRGWKGRVELVE 66 (110)
Q Consensus 34 v~~g~~D-~L~d~~~~~a~~L~~~G~~v~v~~~~ 66 (110)
+++.-.+ ...+.+..++++|+++| ..|++..
T Consensus 545 ~Ii~~~~~~~~~~a~~la~~LR~~G--i~veid~ 576 (639)
T PRK12444 545 KVIPVSNAVHVQYADEVADKLAQAG--IRVERDE 576 (639)
T ss_pred EEEEcccHHHHHHHHHHHHHHHHCC--CEEEEEC
Confidence 3343344 57788999999999999 7788754
No 316
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=22.08 E-value=1.4e+02 Score=22.01 Aligned_cols=32 Identities=28% Similarity=0.161 Sum_probs=22.5
Q ss_pred cCCCcc--chHHHHHHHHHHhcCCcccEEEEEeCCC
Q 043546 37 AERDYL--CPAGKNYYEELKKRGWKGRVELVEHLDE 70 (110)
Q Consensus 37 g~~D~L--~d~~~~~a~~L~~~G~~v~v~~~~~~g~ 70 (110)
|+.|+- .+.-..+.++|+++| +.|.+.+-|+.
T Consensus 102 gGldv~~~~~~l~~~i~~L~~~g--IrvSLFiDP~~ 135 (239)
T PF03740_consen 102 GGLDVAGNRDRLKPVIKRLKDAG--IRVSLFIDPDP 135 (239)
T ss_dssp SSB-TCGGHHHHHHHHHHHHHTT---EEEEEE-S-H
T ss_pred cCChhhcCHHHHHHHHHHHHhCC--CEEEEEeCCCH
Confidence 556654 567778999999999 99999888864
No 317
>PRK12757 cell division protein FtsN; Provisional
Probab=22.06 E-value=3.4e+02 Score=20.25 Aligned_cols=31 Identities=6% Similarity=-0.009 Sum_probs=23.1
Q ss_pred EEEEecCCCccchHHHHHHHHHHhcCCcccEEEE
Q 043546 32 VLIFVAERDYLCPAGKNYYEELKKRGWKGRVELV 65 (110)
Q Consensus 32 ~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~ 65 (110)
.+|.+|.+= =++.+..+.++|+..| .++...
T Consensus 185 ~~VQVGAF~-~~~nAe~L~arL~~~G--~~a~I~ 215 (256)
T PRK12757 185 WMVQCGSFK-GTEQAESVRAQLAFAG--IESRIT 215 (256)
T ss_pred EEEEEeeCC-CHHHHHHHHHHHHhcC--CceEEe
Confidence 477777743 2678999999999999 666543
No 318
>PF07881 Fucose_iso_N1: L-fucose isomerase, first N-terminal domain; InterPro: IPR012888 Proteins containing this domain are similar to L-fucose isomerase expressed by Escherichia coli (P11552 from SWISSPROT, 5.3.1.3 from EC). This enzyme corresponds to glucose-6-phosphate isomerase in glycolysis, and converts an aldo-hexose to a ketose to prepare it for aldol cleavage. The enzyme is a hexamer, with each subunit being wedge-shaped and composed of three domains. Both domains 1 and 2 contain central parallel beta-sheets with surrounding alpha helices. Domain 1 demonstrates the beta-alpha-beta-alpha- beta Rossman fold. The active centre is shared between pairs of subunits related along the molecular three-fold axis, with domains 2 and 3 from one subunit providing most of the substrate-contacting residues, and domain 1 from the adjacent subunit contributing some other residues []. ; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 3A9R_A 3A9T_C 3A9S_C 1FUI_E.
Probab=22.05 E-value=1.3e+02 Score=21.06 Aligned_cols=47 Identities=15% Similarity=0.129 Sum_probs=29.4
Q ss_pred cEEEEecCCCc-cchHHHHHHHHHHhcCCcccEEEEEeC-------------CCceeeeecCC
Q 043546 31 RVLIFVAERDY-LCPAGKNYYEELKKRGWKGRVELVEHL-------------DEKHVFYLRNP 79 (110)
Q Consensus 31 P~lv~~g~~D~-L~d~~~~~a~~L~~~G~~v~v~~~~~~-------------g~~H~f~~~~~ 79 (110)
|+=++++..-+ =..++.+-++++++.| |.+++.++| .+++.+..+..
T Consensus 49 ~Ve~Viad~~Iggv~eAa~~ae~f~~~~--V~~titvtpcWcy~~etmd~~~~~p~aiwgfng 109 (171)
T PF07881_consen 49 PVECVIADTTIGGVAEAAACAEKFKREG--VGVTITVTPCWCYGSETMDMDPNTPKAIWGFNG 109 (171)
T ss_dssp B--EEE-SS-B-SHHHHHHHHHHHHCCT--EEEEEEEESS---HHHHS---TTS-EEEEE---
T ss_pred eeEEEECCCcccCHHHHHHHHHHHHHcC--CCEEEEEEeeeecchhhhccCcCCCccEEeecC
Confidence 44445554222 2678899999999999 999999885 56676666654
No 319
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=22.03 E-value=24 Score=25.37 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=21.9
Q ss_pred ceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 71 KHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 71 ~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
.+||..+...+..+...++++..|+++.
T Consensus 4 d~G~~~l~~r~~~g~~~~~el~~f~keR 31 (236)
T cd07651 4 DAGFDVIQTRIKDSLRTLEELRSFYKER 31 (236)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567666667778888999999999875
No 320
>COG3286 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.92 E-value=3.1e+02 Score=19.74 Aligned_cols=48 Identities=15% Similarity=0.077 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHh
Q 043546 47 KNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQ 97 (110)
Q Consensus 47 ~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~ 97 (110)
.+|.++|++.+ ...+.++.|..|..-.+.+..++-++.+..+.+-.++
T Consensus 16 e~flE~lqr~~---~~~~v~~~g~n~vkV~v~G~~~eireair~irel~~~ 63 (204)
T COG3286 16 EEFLERLQRMV---KDTYVEIRGKNRVKVNVFGTKDEIREAIRAIRELHRR 63 (204)
T ss_pred HHHHHHHHHhC---cceEEEEccCceEEEEEecchHHHHHHHHHHHHHHHH
Confidence 67999999997 4678888888998776666666666666666555544
No 321
>cd08517 PBP2_NikA_DppA_OppA_like_13 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most s
Probab=21.92 E-value=1.7e+02 Score=22.70 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=21.2
Q ss_pred CccchHHHHHHHHHHhcCCcccEEEEEeC
Q 043546 40 DYLCPAGKNYYEELKKRGWKGRVELVEHL 68 (110)
Q Consensus 40 D~L~d~~~~~a~~L~~~G~~v~v~~~~~~ 68 (110)
+...+-+..+.+.|++.| ++|++...+
T Consensus 345 ~~~~~~a~~i~~~l~~iG--i~v~i~~~~ 371 (480)
T cd08517 345 EFWKRTAEYVKQALKEVG--IDVELRSQD 371 (480)
T ss_pred chHHHHHHHHHHHHHHcC--CEEEEEEec
Confidence 335778889999999999 888877643
No 322
>COG1282 PntB NAD/NADP transhydrogenase beta subunit [Energy production and conversion]
Probab=21.87 E-value=95 Score=24.79 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=29.9
Q ss_pred CcEEEEecCCCccchH----HHHHHHHHHhcCCcccEEEEEeC
Q 043546 30 ERVLIFVAERDYLCPA----GKNYYEELKKRGWKGRVELVEHL 68 (110)
Q Consensus 30 PP~lv~~g~~D~L~d~----~~~~a~~L~~~G~~v~v~~~~~~ 68 (110)
....|++-++-.-..| -++++++|++.| |+|++-+.|
T Consensus 308 A~sVIIvPGYGmAVAQAQh~v~E~~~~L~~~G--v~VrfaIHP 348 (463)
T COG1282 308 ASSVIIVPGYGMAVAQAQHPVAEITEKLRARG--VNVRFAIHP 348 (463)
T ss_pred CCeEEEecCchHHHHhhhhHHHHHHHHHHhcC--CeeeEeecc
Confidence 4778888888865433 468999999999 999998888
No 323
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=21.53 E-value=1.6e+02 Score=22.72 Aligned_cols=29 Identities=38% Similarity=0.470 Sum_probs=22.5
Q ss_pred cEEEEecCCCccchHHHHHHHHHHhcCCcccEEE
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKKRGWKGRVEL 64 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~ 64 (110)
.=-|++|.-|=+ |++||++|.+.| -+|-+
T Consensus 50 ~WAVVTGaTDGI---GKayA~eLAkrG--~nvvL 78 (312)
T KOG1014|consen 50 SWAVVTGATDGI---GKAYARELAKRG--FNVVL 78 (312)
T ss_pred CEEEEECCCCcc---hHHHHHHHHHcC--CEEEE
Confidence 445888998866 789999999999 44543
No 324
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=21.29 E-value=1.7e+02 Score=19.24 Aligned_cols=32 Identities=31% Similarity=0.407 Sum_probs=26.4
Q ss_pred CcEEEEecCCCccchHHHHHHHHHHhcCCcccEE
Q 043546 30 ERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVE 63 (110)
Q Consensus 30 PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~ 63 (110)
..++-++.+.|..+..+++-.+..++.| -+++
T Consensus 105 ~rvieiv~~~~~~~~~aR~r~r~Yk~~G--~~l~ 136 (137)
T PF04364_consen 105 ERVIEIVDQDDEAKQAARERYRFYKDRG--YELQ 136 (137)
T ss_dssp SEEEEEE-SSHHHHHHHHHHHHHHHHTT--EEEE
T ss_pred cEEEEEecCCHHHHHHHHHHHHHHHHcC--CCCc
Confidence 6788888888889999999999999999 5554
No 325
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=21.28 E-value=2.3e+02 Score=22.28 Aligned_cols=32 Identities=16% Similarity=0.151 Sum_probs=26.0
Q ss_pred CcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEe
Q 043546 30 ERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEH 67 (110)
Q Consensus 30 PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~ 67 (110)
|..++++|+. .-+.++|..|.+.| .+|++.+-
T Consensus 166 ~~~vvIIGgG----~iG~E~A~~l~~~g--~~Vtli~~ 197 (450)
T TIGR01421 166 PKRVVIVGAG----YIAVELAGVLHGLG--SETHLVIR 197 (450)
T ss_pred CCeEEEECCC----HHHHHHHHHHHHcC--CcEEEEec
Confidence 7778888886 35999999999999 88887654
No 326
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=21.21 E-value=3.4e+02 Score=19.98 Aligned_cols=37 Identities=5% Similarity=-0.058 Sum_probs=28.0
Q ss_pred cEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCc
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEK 71 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~ 71 (110)
|+++++--+.++.-.-..|.++++++| ++-- +.|+++
T Consensus 91 p~vlm~Y~N~i~~~G~e~f~~~~~~aG--vdGv--iipDLp 127 (258)
T PRK13111 91 PIVLMTYYNPIFQYGVERFAADAAEAG--VDGL--IIPDLP 127 (258)
T ss_pred CEEEEecccHHhhcCHHHHHHHHHHcC--CcEE--EECCCC
Confidence 778888888887777888999999999 5433 446654
No 327
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=21.21 E-value=1.8e+02 Score=19.83 Aligned_cols=34 Identities=18% Similarity=0.160 Sum_probs=20.3
Q ss_pred CcEEEEecCC-CccchHHHHHHHHHHhcCCcccEEEEEe
Q 043546 30 ERVLIFVAER-DYLCPAGKNYYEELKKRGWKGRVELVEH 67 (110)
Q Consensus 30 PP~lv~~g~~-D~L~d~~~~~a~~L~~~G~~v~v~~~~~ 67 (110)
|.+.|+.|+. |.-. .++-.+.|++.| +++++.+.
T Consensus 1 p~V~Ii~gs~SD~~~--~~~a~~~L~~~g--i~~~~~V~ 35 (150)
T PF00731_consen 1 PKVAIIMGSTSDLPI--AEEAAKTLEEFG--IPYEVRVA 35 (150)
T ss_dssp -EEEEEESSGGGHHH--HHHHHHHHHHTT---EEEEEE-
T ss_pred CeEEEEeCCHHHHHH--HHHHHHHHHHcC--CCEEEEEE
Confidence 3445555554 5433 677778888899 77876554
No 328
>PRK06849 hypothetical protein; Provisional
Probab=21.19 E-value=3.8e+02 Score=20.42 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=25.8
Q ss_pred CcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeC
Q 043546 30 ERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHL 68 (110)
Q Consensus 30 PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~ 68 (110)
|++++++|...+ .+..+++.|+++| ..|.+....
T Consensus 4 ~~~VLI~G~~~~---~~l~iar~l~~~G--~~Vi~~d~~ 37 (389)
T PRK06849 4 KKTVLITGARAP---AALELARLFHNAG--HTVILADSL 37 (389)
T ss_pred CCEEEEeCCCcH---HHHHHHHHHHHCC--CEEEEEeCC
Confidence 577788887655 4789999999999 777665444
No 329
>cd07373 2A5CPDO_A The alpha subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO) catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the alpha subunit, which does not contain a potential metal binding site and may not possess catalytic activity.
Probab=21.09 E-value=82 Score=23.22 Aligned_cols=29 Identities=7% Similarity=-0.127 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCCcccEEEEEeC--CCceeee
Q 043546 45 AGKNYYEELKKRGWKGRVELVEHL--DEKHVFY 75 (110)
Q Consensus 45 ~~~~~a~~L~~~G~~v~v~~~~~~--g~~H~f~ 75 (110)
=+.+.++.++++| +++.....+ +.+||..
T Consensus 92 LA~~i~~~~~~~g--i~~~~~~~~~~~lDHG~~ 122 (271)
T cd07373 92 LAEACVTACPEHG--VHARGVDYDGFPIDTGTI 122 (271)
T ss_pred HHHHHHHHHHHCC--CcEEEecCCCCCCcchhH
Confidence 3667778888999 888744443 7999954
No 330
>PF15652 Tox-SHH: HNH/Endo VII superfamily toxin with a SHH signature
Probab=20.97 E-value=1.4e+02 Score=19.13 Aligned_cols=10 Identities=10% Similarity=0.019 Sum_probs=8.4
Q ss_pred CcEEEEecCC
Q 043546 30 ERVLIFVAER 39 (110)
Q Consensus 30 PP~lv~~g~~ 39 (110)
||+++.+++.
T Consensus 29 p~~ll~s~~g 38 (100)
T PF15652_consen 29 PATLLESGSG 38 (100)
T ss_pred CCeeeccCCC
Confidence 8999999883
No 331
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=20.93 E-value=3.3e+02 Score=20.13 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=28.2
Q ss_pred cEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCc
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEK 71 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~ 71 (110)
|.++++--+..+.-.-..|.++++++| +.-...|+++
T Consensus 93 p~vlm~Y~N~i~~~G~e~F~~~~~~aG----vdgviipDLP 129 (263)
T CHL00200 93 PIVIFTYYNPVLHYGINKFIKKISQAG----VKGLIIPDLP 129 (263)
T ss_pred CEEEEecccHHHHhCHHHHHHHHHHcC----CeEEEecCCC
Confidence 777888888888777788999999999 4445555544
No 332
>PRK13626 transcriptional regulator SgrR; Provisional
Probab=20.91 E-value=2e+02 Score=23.35 Aligned_cols=30 Identities=13% Similarity=-0.005 Sum_probs=23.2
Q ss_pred cCCCccchHHHHHHHHHHhcCCcccEEEEEeC
Q 043546 37 AERDYLCPAGKNYYEELKKRGWKGRVELVEHL 68 (110)
Q Consensus 37 g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~ 68 (110)
.+......-+..+.+.|++.| ++|++..++
T Consensus 411 ~~~~~~~~~A~~iq~~l~~~G--I~v~i~~~~ 440 (552)
T PRK13626 411 QDHSEHRVIAGIMQQLLASHG--VTLEIQEID 440 (552)
T ss_pred cCCccHHHHHHHHHHHHHHhC--cEEEEEEee
Confidence 333456778889999999999 888887665
No 333
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=20.89 E-value=2.1e+02 Score=20.08 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=19.5
Q ss_pred cchHHHHHHHHHHhcCCcccEEEEEe
Q 043546 42 LCPAGKNYYEELKKRGWKGRVELVEH 67 (110)
Q Consensus 42 L~d~~~~~a~~L~~~G~~v~v~~~~~ 67 (110)
+.+.+.+.++.|+++| +.|++..-
T Consensus 28 ~~~~a~~i~~~Lr~~G--irv~~D~r 51 (202)
T cd00862 28 VLEAADELAERLKAAG--IRVHVDDR 51 (202)
T ss_pred HHHHHHHHHHHHHHCC--CEEEEECC
Confidence 6778999999999999 77877553
No 334
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=20.86 E-value=1.9e+02 Score=16.84 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHhcCCcccE--EEEEeCCCceeeeecCC
Q 043546 44 PAGKNYYEELKKRGWKGRV--ELVEHLDEKHVFYLRNP 79 (110)
Q Consensus 44 d~~~~~a~~L~~~G~~v~v--~~~~~~g~~H~f~~~~~ 79 (110)
++-.++.++|+++| +++ .....+...+.|.+..|
T Consensus 65 ~dv~~~~~~l~~~G--~~~~~~~~~~~~g~~~~~~~DP 100 (108)
T PF12681_consen 65 EDVDALYERLKELG--AEIVTEPRDDPWGQRSFYFIDP 100 (108)
T ss_dssp SHHHHHHHHHHHTT--SEEEEEEEEETTSEEEEEEE-T
T ss_pred cCHHHHHHHHHHCC--CeEeeCCEEcCCCeEEEEEECC
Confidence 88899999999999 664 34455555566766554
No 335
>cd08490 PBP2_NikA_DppA_OppA_like_3 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most s
Probab=20.73 E-value=2.1e+02 Score=22.09 Aligned_cols=27 Identities=30% Similarity=0.198 Sum_probs=20.5
Q ss_pred CccchHHHHHHHHHHhcCCcccEEEEEeC
Q 043546 40 DYLCPAGKNYYEELKKRGWKGRVELVEHL 68 (110)
Q Consensus 40 D~L~d~~~~~a~~L~~~G~~v~v~~~~~~ 68 (110)
.....-+..+.+.|++.| ++|++...+
T Consensus 332 ~~~~~~a~~i~~~l~~~G--i~v~~~~~~ 358 (470)
T cd08490 332 PELPPIAEAIQAQLKKIG--IDVEIRVVE 358 (470)
T ss_pred CchHHHHHHHHHHHHHcC--ceEEEEEee
Confidence 345667888999999999 778776543
No 336
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=20.62 E-value=1.7e+02 Score=21.32 Aligned_cols=39 Identities=28% Similarity=0.316 Sum_probs=27.9
Q ss_pred cccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeC
Q 043546 24 LARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHL 68 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~ 68 (110)
++.++.+..++..-+ | +.+..+.+.|++.| +++.+....
T Consensus 48 l~~lG~~~~~i~~vG-~---~~g~~i~~~l~~~g--v~~~~~~~~ 86 (309)
T PRK10294 48 IAHLGGSATAIFPAG-G---ATGEHLVSLLADEN--VPVATVEAK 86 (309)
T ss_pred HHHcCCCeEEEEEec-C---ccHHHHHHHHHHcC--CCceEEECC
Confidence 556776556664444 4 35999999999999 877766554
No 337
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=20.57 E-value=2.4e+02 Score=19.19 Aligned_cols=34 Identities=26% Similarity=0.297 Sum_probs=22.6
Q ss_pred EEEEecCCCcc-chHHHHHHHHHHh--cCCcccEEEEEeCCC
Q 043546 32 VLIFVAERDYL-CPAGKNYYEELKK--RGWKGRVELVEHLDE 70 (110)
Q Consensus 32 ~lv~~g~~D~L-~d~~~~~a~~L~~--~G~~v~v~~~~~~g~ 70 (110)
+.+++ ..||+ .+-+..+.+++++ .| + ++.+.||.
T Consensus 79 V~~l~-~GDP~~~~~~~~l~~~l~~~~~g--i--~v~iiPGi 115 (210)
T PF00590_consen 79 VVVLV-SGDPLFFSTGSYLVRALRAEERG--I--EVEIIPGI 115 (210)
T ss_dssp EEEEE-SBSTTSSSSHHHHHHHHHHHHTT--C--EEEEE--T
T ss_pred EEEeC-CCCCCcccHHHHHHHHHHhhcCC--C--ceEEEecC
Confidence 44444 66874 7778889999999 88 4 45577874
No 338
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=20.55 E-value=69 Score=21.03 Aligned_cols=30 Identities=27% Similarity=0.076 Sum_probs=23.3
Q ss_pred ecCCCccchHHHHHHHHHHhcCCcccEEEEEe
Q 043546 36 VAERDYLCPAGKNYYEELKKRGWKGRVELVEH 67 (110)
Q Consensus 36 ~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~ 67 (110)
.+..+.|.+-...+...|+..| +.|++..-
T Consensus 19 ~~Tg~~L~~av~~l~~~L~~~G--iev~l~~~ 48 (120)
T PF10865_consen 19 GDTGETLREAVKELAPVLAPLG--IEVRLEEI 48 (120)
T ss_pred hhHHHHHHHHHHHHHHHHHhCC--cEEEEEEE
Confidence 3455678888889999999999 77776654
No 339
>PF07223 DUF1421: Protein of unknown function (DUF1421); InterPro: IPR010820 This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function.
Probab=20.51 E-value=77 Score=24.80 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=19.9
Q ss_pred cchHHHHHHHHHHhcCCcccEEEEE
Q 043546 42 LCPAGKNYYEELKKRGWKGRVELVE 66 (110)
Q Consensus 42 L~d~~~~~a~~L~~~G~~v~v~~~~ 66 (110)
-||..+..++||.++| -.|+|-+
T Consensus 334 ~rDqV~a~v~rl~E~G--Q~vD~N~ 356 (358)
T PF07223_consen 334 RRDQVRATVRRLTENG--QPVDLNV 356 (358)
T ss_pred cHHHHHHHHHHHHhcC--Ccccccc
Confidence 4899999999999999 7888754
No 340
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=20.45 E-value=3.1e+02 Score=20.25 Aligned_cols=47 Identities=6% Similarity=0.096 Sum_probs=28.7
Q ss_pred chHHHHHHHHHHhcCCcccEEEEEeCC----Cce--eeeecCCCcHHHHHHHHHH
Q 043546 43 CPAGKNYYEELKKRGWKGRVELVEHLD----EKH--VFYLRNPTCTNALELTNKF 91 (110)
Q Consensus 43 ~d~~~~~a~~L~~~G~~v~v~~~~~~g----~~H--~f~~~~~~~~~a~~~~~~i 91 (110)
.++.+++++++++.| +++....... ... .|.......|..+++++++
T Consensus 23 ~~~v~~~~~~~~~~~--iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l 75 (308)
T cd06593 23 EEEVNEFADGMRERN--LPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRL 75 (308)
T ss_pred HHHHHHHHHHHHHcC--CCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHH
Confidence 456789999999999 8888755552 122 3444433445444444443
No 341
>PRK13372 pcmA protocatechuate 4,5-dioxygenase; Provisional
Probab=20.40 E-value=1.2e+02 Score=24.52 Aligned_cols=28 Identities=11% Similarity=0.167 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcCCcccEEEEEeCCCceeee
Q 043546 46 GKNYYEELKKRGWKGRVELVEHLDEKHVFY 75 (110)
Q Consensus 46 ~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~ 75 (110)
+..+++.|.++| +++....--+.+||+.
T Consensus 248 A~~I~~~L~~~G--fD~a~~~erglDHG~~ 275 (444)
T PRK13372 248 AAHIAQSVIQDD--FDLTIVNEMDVDHGLT 275 (444)
T ss_pred HHHHHHHHHhcC--CChhhccCCCCCchhh
Confidence 467778888889 8888877889999943
No 342
>PRK13366 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=20.40 E-value=81 Score=23.67 Aligned_cols=30 Identities=10% Similarity=0.138 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHhcCCcccEEEEEeCCCceeee
Q 043546 44 PAGKNYYEELKKRGWKGRVELVEHLDEKHVFY 75 (110)
Q Consensus 44 d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~ 75 (110)
+=+...++.+.+.| +++....-.+.+||+.
T Consensus 99 eLA~~i~~~l~~~g--~~~~~~~~~~lDHG~~ 128 (284)
T PRK13366 99 DLAAHIAQSVIQDD--FDLTIVNKMDVDHGLT 128 (284)
T ss_pred HHHHHHHHHHHHCC--CCEeecCCCCCCccHH
Confidence 33577778888899 8888777778899864
No 343
>PRK06703 flavodoxin; Provisional
Probab=20.38 E-value=2.6e+02 Score=18.16 Aligned_cols=16 Identities=38% Similarity=0.638 Sum_probs=12.6
Q ss_pred cchHHHHHHHHHHhcC
Q 043546 42 LCPAGKNYYEELKKRG 57 (110)
Q Consensus 42 L~d~~~~~a~~L~~~G 57 (110)
...-+..+.++|++.|
T Consensus 98 ~~~a~~~l~~~l~~~G 113 (151)
T PRK06703 98 FCEAVTIFEERLVERG 113 (151)
T ss_pred HHHHHHHHHHHHHHCC
Confidence 3566777889999988
No 344
>TIGR03623 probable DNA repair protein. Members of this protein family are bacterial proteins of about 900 amino acids in length. Members show extended homology to proteins in TIGR02786, the AddB protein of double-strand break repair via homologous recombination. Members of this family, therefore, may be DNA repair proteins.
Probab=20.30 E-value=4.2e+02 Score=22.92 Aligned_cols=65 Identities=17% Similarity=0.067 Sum_probs=40.5
Q ss_pred CcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEe-CCCceeeeecCCCcHHHHHHHHHHHHHHHhh
Q 043546 30 ERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEH-LDEKHVFYLRNPTCTNALELTNKFISFIKQN 98 (110)
Q Consensus 30 PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~-~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~ 98 (110)
.|.-|+..++|-+......+-+.|.+.| +.|....- ++..+......- ...++-+..++.|+++.
T Consensus 161 ~~~~i~l~GF~~~tP~q~~l~~~l~~~~--~~v~~~~~~~~~~~~~~~~~~--~~~~~E~~~~a~~l~~~ 226 (874)
T TIGR03623 161 LPKQIILAGFDELTPQQQALLAALEARG--VDVQQWLPESGEQASAQRLAC--ADPEAEIRAAARWARQQ 226 (874)
T ss_pred CCccEEEEecCCCCHHHHHHHHHHHHcC--ceeEecccccCCCCcceeEec--CChHHHHHHHHHHHHHH
Confidence 4777788889999999999999999999 77744211 122333332221 12233455666666655
No 345
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=20.30 E-value=90 Score=22.37 Aligned_cols=24 Identities=13% Similarity=0.361 Sum_probs=20.5
Q ss_pred cCCcccEEEEEeCCCceeeeecCC
Q 043546 56 RGWKGRVELVEHLDEKHVFYLRNP 79 (110)
Q Consensus 56 ~G~~v~v~~~~~~g~~H~f~~~~~ 79 (110)
+||.|.+++.-.+.+.|-+.+...
T Consensus 92 AGw~V~i~f~N~~~l~Hnl~iv~~ 115 (196)
T PF06525_consen 92 AGWNVQITFTNQESLPHNLVIVQN 115 (196)
T ss_pred CCCEEEEEEEcCCCCCeeEEEEeC
Confidence 688888888888999999988754
No 346
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=20.22 E-value=3.6e+02 Score=20.05 Aligned_cols=62 Identities=5% Similarity=-0.100 Sum_probs=43.6
Q ss_pred cEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeCCCceeeeecCCCcHHHHHHHHHHHHHHHhhh
Q 043546 31 RVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYLRNPTCTNALELTNKFISFIKQNN 99 (110)
Q Consensus 31 P~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~i~~fl~~~~ 99 (110)
|-+ .++.+-+.+.+.+=++.|+++| ++.- ..+++.=. +......++...++..++.-+++..
T Consensus 17 P~~--~~~~~~i~e~A~~ea~~l~~~G--vD~v--iveN~~d~-P~~~~~~p~tva~m~~i~~~v~~~~ 78 (257)
T TIGR00259 17 PSF--DDNLNAVIDKAWKDAMALEEGG--VDAV--MFENFFDA-PFLKEVDPETVAAMAVIAGQLKSDV 78 (257)
T ss_pred CCC--CCCHHHHHHHHHHHHHHHHhCC--CCEE--EEecCCCC-CCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 444 5566788999999999999999 5554 44554432 2222577888888888888777653
No 347
>PRK11113 D-alanyl-D-alanine carboxypeptidase/endopeptidase; Provisional
Probab=20.22 E-value=1.2e+02 Score=24.39 Aligned_cols=28 Identities=29% Similarity=0.100 Sum_probs=22.9
Q ss_pred cEEEEecCCCcc--chHHHHHHHHHHhcCC
Q 043546 31 RVLIFVAERDYL--CPAGKNYYEELKKRGW 58 (110)
Q Consensus 31 P~lv~~g~~D~L--~d~~~~~a~~L~~~G~ 58 (110)
-.|++.|+.||. ..+-..+++.|++.|.
T Consensus 99 GdL~i~G~GDPtL~~~~L~~la~~l~~~GI 128 (477)
T PRK11113 99 GDLIARFGGDPTLTRQDLRNMVATLKKSGV 128 (477)
T ss_pred eeEEEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 368899999985 4557889999999993
No 348
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.15 E-value=1e+02 Score=23.73 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=31.0
Q ss_pred HHhcCCcccEEEEEeCCCceeeeecC-------CCcHHHHHHHHHHHHHHHhhh
Q 043546 53 LKKRGWKGRVELVEHLDEKHVFYLRN-------PTCTNALELTNKFISFIKQNN 99 (110)
Q Consensus 53 L~~~G~~v~v~~~~~~g~~H~f~~~~-------~~~~~a~~~~~~i~~fl~~~~ 99 (110)
..+.+ -+|++....|++|++..-. ..+...-.+.+.|.+|++.+.
T Consensus 257 ~~~~~--~~V~~y~i~g~GH~wp~~~~~~~~~~g~~t~~~dat~~iw~Ff~~~~ 308 (312)
T COG3509 257 TCDGN--ARVELYTIDGGGHTWPGGTQYGPAALGMSTRGFDATERIWRFFRQHR 308 (312)
T ss_pred ccCCC--cceEEEEEeCCcccCcCCCCCCcccccccccCcchHHHHHHHHHhcc
Confidence 33455 6799999999999998521 123334456778888888763
No 349
>PLN02323 probable fructokinase
Probab=20.13 E-value=1.8e+02 Score=21.50 Aligned_cols=40 Identities=30% Similarity=0.278 Sum_probs=28.5
Q ss_pred cccCCCCcEEEEecCCCccchHHHHHHHHHHhcCCcccEEEEEeC
Q 043546 24 LARLGCERVLIFVAERDYLCPAGKNYYEELKKRGWKGRVELVEHL 68 (110)
Q Consensus 24 l~~l~~PP~lv~~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~~~~ 68 (110)
++.++.+..++-.-+.|.+ +..+.+.|++.| |++.+....
T Consensus 53 la~LG~~~~~i~~vG~D~~---g~~i~~~L~~~G--I~~~~v~~~ 92 (330)
T PLN02323 53 ISRLGGSSAFIGKVGDDEF---GHMLADILKKNG--VNNEGVRFD 92 (330)
T ss_pred HHhcCCceeEEEEecCChh---HHHHHHHHHHcC--CCCcceEEc
Confidence 5567777777777777765 466778899999 877765443
No 350
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.12 E-value=49 Score=19.97 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=20.2
Q ss_pred ecCCCccchHHHHHHHHHHhcCCcccEEEE
Q 043546 36 VAERDYLCPAGKNYYEELKKRGWKGRVELV 65 (110)
Q Consensus 36 ~g~~D~L~d~~~~~a~~L~~~G~~v~v~~~ 65 (110)
-.|.|-+| .+.+.+++|+.| +.+.|.
T Consensus 26 ~~GLDSiR--~M~L~~~wR~~G--~~i~F~ 51 (74)
T COG3433 26 DYGLDSIR--MMALLERWRKRG--ADIDFA 51 (74)
T ss_pred HhchhHHH--HHHHHHHHHHcC--CcccHH
Confidence 34557777 889999999999 777654
No 351
>PRK05443 polyphosphate kinase; Provisional
Probab=20.09 E-value=1.1e+02 Score=26.10 Aligned_cols=28 Identities=18% Similarity=0.076 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHhcCCcccEEEEEeCCCcee
Q 043546 44 PAGKNYYEELKKRGWKGRVELVEHLDEKHV 73 (110)
Q Consensus 44 d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~ 73 (110)
..+..++++|+++| +.|.+-...+..|+
T Consensus 409 ~~n~~~~~~L~~aG--v~V~y~~~~~k~Ha 436 (691)
T PRK05443 409 EANIRWARRLEEAG--VHVVYGVVGLKTHA 436 (691)
T ss_pred HHHHHHHHHHHHcC--CEEEEccCCcccee
Confidence 35789999999999 88866555556664
No 352
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=20.08 E-value=2.5e+02 Score=17.84 Aligned_cols=56 Identities=14% Similarity=-0.032 Sum_probs=37.6
Q ss_pred cchHHHHHHHHHHhcCCcccEEEEEeCCCceeeee-cCC--------CcHHHHHHHHHHHHHHHhh
Q 043546 42 LCPAGKNYYEELKKRGWKGRVELVEHLDEKHVFYL-RNP--------TCTNALELTNKFISFIKQN 98 (110)
Q Consensus 42 L~d~~~~~a~~L~~~G~~v~v~~~~~~g~~H~f~~-~~~--------~~~~a~~~~~~i~~fl~~~ 98 (110)
..--+.+++-+|.+.++ +++....-....||-.. ..+ ...+..+.+.++.+++++.
T Consensus 24 s~~~a~e~~~kl~e~~~-i~~~~~~~~e~~hg~~~~~~~~~~vi~is~~g~t~~~~~~~~~~~~~~ 88 (153)
T cd05009 24 NYGTALEGALKLKETSY-IHAEAYSAGEFKHGPIALVDEGTPVIFLAPEDRLEEKLESLIKEVKAR 88 (153)
T ss_pred CHHHHHHHHHHHHHHHh-hcceeccHHHhccChhhhccCCCcEEEEecCChhHHHHHHHHHHHHHc
Confidence 44447888889988864 68888888888888333 211 2234455567778888764
No 353
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=20.02 E-value=4.3e+02 Score=20.76 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=21.4
Q ss_pred CcEEEEecCCCcc-chHHHHHHHHHHhcCCcccE
Q 043546 30 ERVLIFVAERDYL-CPAGKNYYEELKKRGWKGRV 62 (110)
Q Consensus 30 PP~lv~~g~~D~L-~d~~~~~a~~L~~~G~~v~v 62 (110)
.+.+|++|=+=+= .+.+.+||++|++.+ ..+
T Consensus 52 ~rllvIvGPCSIhd~~~aleyA~rLk~l~--~~~ 83 (356)
T PRK12822 52 PRLLVIIGPCSIHDPQAALEYAKRLAVLQ--HQY 83 (356)
T ss_pred CCeEEEEcCCcCCCHHHHHHHHHHHHHHH--Hhh
Confidence 4566666653321 457999999999998 653
Done!