BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043547
(326 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QVE|A Chain A, Crystal Structure Of Sgtam Bound To Mechanism Based
Inhibitor
pdb|2QVE|B Chain B, Crystal Structure Of Sgtam Bound To Mechanism Based
Inhibitor
Length = 526
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 152 TQEEIEGIKKGNYELGKLETGHGERTNRETDQEELIKLKQKLV-SQVLEIGIIF-----H 205
++E EGI + N + + TG+GE + D+ + ++L+ LV S +G +F
Sbjct: 37 SREIFEGIAEQNIPIYGVTTGYGEMIYMQVDKSKEVELQTNLVRSHSAGVGPLFAEDEAR 96
Query: 206 SVIIGVTMGMSQNQCTIRPLVAALAFHQIFEGM 238
+++ +++ +RP++ + EG+
Sbjct: 97 AIVAARLNTLAKGHSAVRPIILERLAQYLNEGI 129
>pdb|2RJR|A Chain A, Substrate Mimic Bound To Sgtam
pdb|2RJR|B Chain B, Substrate Mimic Bound To Sgtam
pdb|2RJS|A Chain A, Sgtam Bound To Substrate Mimic
pdb|2RJS|B Chain B, Sgtam Bound To Substrate Mimic
Length = 537
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 152 TQEEIEGIKKGNYELGKLETGHGERTNRETDQEELIKLKQKLV-SQVLEIGIIF-----H 205
++E EGI + N + + TG+GE + D+ + ++L+ LV S +G +F
Sbjct: 48 SREIFEGIAEQNIPIYGVTTGYGEMIYMQVDKSKEVELQTNLVRSHSAGVGPLFAEDEAR 107
Query: 206 SVIIGVTMGMSQNQCTIRPLVAALAFHQIFEGM 238
+++ +++ +RP++ + EG+
Sbjct: 108 AIVAARLNTLAKGHSAVRPIILERLAQYLNEGI 140
>pdb|2OHY|A Chain A, X-Ray Crystal Structure Of Tyrosine Aminomutase From
Streptomyces Globisporus
pdb|2OHY|B Chain B, X-Ray Crystal Structure Of Tyrosine Aminomutase From
Streptomyces Globisporus
Length = 539
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 152 TQEEIEGIKKGNYELGKLETGHGERTNRETDQEELIKLKQKLV-SQVLEIGIIF-----H 205
++E EGI + N + + TG+GE + D+ + ++L+ LV S +G +F
Sbjct: 50 SREIFEGIAEQNIPIYGVTTGYGEMIYMQVDKSKEVELQTNLVRSHSAGVGPLFAEDEAR 109
Query: 206 SVIIGVTMGMSQNQCTIRPLVAALAFHQIFEGM 238
+++ +++ +RP++ + EG+
Sbjct: 110 AIVAARLNTLAKGHSAVRPIILERLAQYLNEGI 142
>pdb|3KDZ|A Chain A, X-Ray Crystal Structure Of A Tyrosine Aminomutase Mutant
Construct With Bound Ligand
pdb|3KDZ|B Chain B, X-Ray Crystal Structure Of A Tyrosine Aminomutase Mutant
Construct With Bound Ligand
Length = 537
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 152 TQEEIEGIKKGNYELGKLETGHGERTNRETDQEELIKLKQKLV-SQVLEIGIIF-----H 205
++E EGI + N + + TG+GE + D+ + ++L+ LV S +G +F
Sbjct: 48 SREIFEGIAEQNIPIFGVTTGYGEMIYMQVDKSKEVELQTNLVRSHSAGVGPLFAEDEAR 107
Query: 206 SVIIGVTMGMSQNQCTIRPLVAALAFHQIFEGM 238
+++ +++ +RP++ + EG+
Sbjct: 108 AIVAARLNTLAKGHSAVRPIILERLAQYLNEGI 140
>pdb|2QM7|A Chain A, Meab, A Bacterial Homolog Of Mmaa, Bound To Gdp
pdb|2QM7|B Chain B, Meab, A Bacterial Homolog Of Mmaa, Bound To Gdp
Length = 337
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 6/35 (17%)
Query: 148 VLVGTQEEIEGIKKGNYELG------KLETGHGER 176
+L G +E++GIKKG +EL K + G GER
Sbjct: 176 MLPGAGDELQGIKKGIFELADMIAVNKADDGDGER 210
>pdb|2QM8|A Chain A, Meab, A Bacterial Homolog Of Mmaa, In The Nucleotide Free
Form
pdb|2QM8|B Chain B, Meab, A Bacterial Homolog Of Mmaa, In The Nucleotide Free
Form
Length = 337
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
Query: 149 LVGTQEEIEGIKKGNYELG------KLETGHGER 176
L G +E++GIKKG +EL K + G GER
Sbjct: 177 LPGAGDELQGIKKGIFELADXIAVNKADDGDGER 210
>pdb|1QU0|A Chain A, Crystal Structure Of The Fifth Laminin G-like Module Of
The Mouse Laminin Alpha2 Chain
pdb|1QU0|B Chain B, Crystal Structure Of The Fifth Laminin G-like Module Of
The Mouse Laminin Alpha2 Chain
pdb|1QU0|C Chain C, Crystal Structure Of The Fifth Laminin G-like Module Of
The Mouse Laminin Alpha2 Chain
pdb|1QU0|D Chain D, Crystal Structure Of The Fifth Laminin G-like Module Of
The Mouse Laminin Alpha2 Chain
Length = 191
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 224 PLVAALAFHQIFEGMGLGGCIAQAGFNFGTVAYMCFMFSVTTPMGIVLGM 273
PL A F+G G + GF G + F F T P G++LG+
Sbjct: 2 PLAANAESGTYFDGTGFAKAVG--GFKVGLDLLVEFEFRTTRPTGVLLGI 49
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,388,061
Number of Sequences: 62578
Number of extensions: 247356
Number of successful extensions: 374
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 370
Number of HSP's gapped (non-prelim): 8
length of query: 326
length of database: 14,973,337
effective HSP length: 99
effective length of query: 227
effective length of database: 8,778,115
effective search space: 1992632105
effective search space used: 1992632105
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)