Query 043547
Match_columns 326
No_of_seqs 129 out of 1422
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 10:10:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043547.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043547hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hqh_E Restin; beta/BETA struc 11.4 84 0.0029 17.3 0.9 17 5-21 7-23 (26)
2 2l9u_A Receptor tyrosine-prote 10.6 2E+02 0.0069 16.9 2.4 10 297-306 21-30 (40)
3 2pzo_E CAP-Gly domain-containi 10.5 89 0.003 19.2 0.9 17 5-21 24-40 (42)
4 2zy9_A Mg2+ transporter MGTE; 8.4 4.3E+02 0.015 24.8 5.4 18 34-52 421-438 (473)
5 3e2u_E CAP-Gly domain-containi 8.2 1.2E+02 0.0043 18.6 0.9 17 5-21 24-40 (42)
6 3j1r_A Archaeal adhesion filam 8.0 3.2E+02 0.011 14.9 3.2 16 291-306 8-23 (26)
7 2jp3_A FXYD domain-containing 6.7 6.3E+02 0.021 17.1 3.9 8 26-33 17-24 (67)
8 2zt9_E Cytochrome B6-F complex 6.6 4.2E+02 0.014 15.1 2.6 14 291-304 10-23 (31)
9 1vry_A Glycine receptor alpha- 6.2 4.9E+02 0.017 18.1 3.3 24 107-130 38-61 (76)
10 2lnl_A C-X-C chemokine recepto 5.7 1E+03 0.034 19.5 6.1 30 28-57 15-44 (296)
No 1
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=11.37 E-value=84 Score=17.31 Aligned_cols=17 Identities=24% Similarity=0.427 Sum_probs=13.6
Q ss_pred CccccCCcCcccccccc
Q 043547 5 AGCAVDTRRALECRNGE 21 (326)
Q Consensus 5 ~~~~~~~~~~~~c~~~~ 21 (326)
+.|+.-||...+|.|.+
T Consensus 7 e~CE~FGH~t~~C~d~e 23 (26)
T 2hqh_E 7 EICEMFGHWATNCNDDE 23 (26)
T ss_dssp TTTTEESSCGGGCCTTC
T ss_pred hHHHHhCcccccCCccc
Confidence 46888899999998654
No 2
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=10.61 E-value=2e+02 Score=16.91 Aligned_cols=10 Identities=20% Similarity=0.507 Sum_probs=7.0
Q ss_pred HHHHHHHHHH
Q 043547 297 GLSSGILIYM 306 (326)
Q Consensus 297 alaaGtflYV 306 (326)
-+-+|||+|-
T Consensus 21 ~~lg~tflyw 30 (40)
T 2l9u_A 21 MMLGGTFLYW 30 (40)
T ss_dssp HHHHHHHHHH
T ss_pred HHhCceeEEE
Confidence 3457889884
No 3
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=10.53 E-value=89 Score=19.25 Aligned_cols=17 Identities=24% Similarity=0.427 Sum_probs=13.9
Q ss_pred CccccCCcCcccccccc
Q 043547 5 AGCAVDTRRALECRNGE 21 (326)
Q Consensus 5 ~~~~~~~~~~~~c~~~~ 21 (326)
+.|++-||...+|+|.+
T Consensus 24 d~CEvFGH~t~~Cndde 40 (42)
T 2pzo_E 24 EICEMFGHWATNCNDDE 40 (42)
T ss_dssp TTTTEESSCGGGCCTTC
T ss_pred ccccccCcccccCCccc
Confidence 46888899999998765
No 4
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=8.36 E-value=4.3e+02 Score=24.76 Aligned_cols=18 Identities=44% Similarity=0.929 Sum_probs=8.7
Q ss_pred HHHHHHHHhHhhHHHHhhh
Q 043547 34 IFFTSVIGVSLPVVLARYL 52 (326)
Q Consensus 34 i~~~sl~g~~lP~~~~~~~ 52 (326)
+.+++++|+++| ++.+|+
T Consensus 421 ~~~a~~~g~~~p-~~~~~~ 438 (473)
T 2zy9_A 421 VFFANLVGAMLP-FLLRRL 438 (473)
T ss_dssp HHHHHHHHTTHH-HHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHc
Confidence 344555555555 333443
No 5
>3e2u_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskelet associated protein, P150glued; 2.60A {Homo sapiens}
Probab=8.16 E-value=1.2e+02 Score=18.64 Aligned_cols=17 Identities=24% Similarity=0.427 Sum_probs=14.1
Q ss_pred CccccCCcCcccccccc
Q 043547 5 AGCAVDTRRALECRNGE 21 (326)
Q Consensus 5 ~~~~~~~~~~~~c~~~~ 21 (326)
+.|++=||-..+|.|.+
T Consensus 24 e~CEVFGH~t~eC~dde 40 (42)
T 3e2u_E 24 EICEMFGHWATNCNDDE 40 (42)
T ss_dssp TTTTEESSCGGGCCTTC
T ss_pred ccceecccccccCCccc
Confidence 57889999999999765
No 6
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=8.00 E-value=3.2e+02 Score=14.85 Aligned_cols=16 Identities=19% Similarity=0.418 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 043547 291 MEGLLGGLSSGILIYM 306 (326)
Q Consensus 291 ~~~il~alaaGtflYV 306 (326)
+.-|+.+++++.++|.
T Consensus 8 ~lLIviav~aaVllyl 23 (26)
T 3j1r_A 8 LLLILIAVAAAVLLYT 23 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556778999999996
No 7
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=6.66 E-value=6.3e+02 Score=17.11 Aligned_cols=8 Identities=13% Similarity=0.393 Sum_probs=3.5
Q ss_pred hHHHHHHH
Q 043547 26 LKFVSIFI 33 (326)
Q Consensus 26 ~ki~~~~~ 33 (326)
++++-+++
T Consensus 17 LRigGLif 24 (67)
T 2jp3_A 17 LQLGGLIF 24 (67)
T ss_dssp HHHHHHHH
T ss_pred heecchhh
Confidence 44444443
No 8
>2zt9_E Cytochrome B6-F complex subunit 6; photosynthesis, heme B,2Fe-2S protei cytochrome F; HET: HEM UMQ CLA OPC SQD BCR; 3.00A {Nostoc SP}
Probab=6.59 E-value=4.2e+02 Score=15.13 Aligned_cols=14 Identities=29% Similarity=0.719 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHH
Q 043547 291 MEGLLGGLSSGILI 304 (326)
Q Consensus 291 ~~~il~alaaGtfl 304 (326)
..+++.++++|.++
T Consensus 10 ~l~~~~~iA~GL~f 23 (31)
T 2zt9_E 10 FLALFTGIAAGLLF 23 (31)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35667778888665
No 9
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=6.15 E-value=4.9e+02 Score=18.05 Aligned_cols=24 Identities=17% Similarity=0.168 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcc
Q 043547 107 GLVTLIGALLALLVDITASAHVEH 130 (326)
Q Consensus 107 ~~~~~~Gf~l~~lie~~~~~~~~~ 130 (326)
.++.+..|.+.-++|..+-.+..+
T Consensus 38 w~~~C~~FVF~aLlEya~V~y~~r 61 (76)
T 1vry_A 38 WLAVCLLFVFSALLEYAAVNFVSR 61 (76)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466778899999999988776554
No 10
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}
Probab=5.74 E-value=1e+03 Score=19.52 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhHhhHHHHhhhcCCCC
Q 043547 28 FVSIFIIFFTSVIGVSLPVVLARYLQGKPS 57 (326)
Q Consensus 28 i~~~~~i~~~sl~g~~lP~~~~~~~~~~~~ 57 (326)
++.-.++++.+++|=.+-++...+.++.|+
T Consensus 15 ~i~y~ii~i~gv~gN~lvi~vi~~~~~lrt 44 (296)
T 2lnl_A 15 IIAYALVFLLSLLGNSLVMLVILYSRVGRS 44 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 333345677777776555444444334343
Done!