Query 043547
Match_columns 326
No_of_seqs 129 out of 1422
Neff 7.9
Searched_HMMs 13730
Date Mon Mar 25 10:10:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043547.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043547hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54l_ f.23.6.1 (L:) Mitochon 28.1 38 0.0028 19.8 3.7 27 23-51 15-41 (46)
2 d2bs2c1 f.21.2.1 (C:1-254) Fum 26.5 50 0.0037 26.7 5.8 68 57-124 21-96 (254)
3 d2yvxa3 f.57.1.1 (A:276-448) M 13.5 79 0.0058 23.9 3.9 23 30-53 119-141 (173)
4 d1kqfb2 f.23.22.1 (B:246-290) 5.5 2.9E+02 0.021 15.8 3.1 18 291-308 17-34 (45)
5 d1n1ua_ g.3.3.1 (A:) Kalata B1 2.8 3.3E+02 0.024 13.7 1.4 9 3-11 1-9 (29)
6 d1rh5b_ f.23.28.1 (B:) Preprot 2.7 4.6E+02 0.034 15.5 2.4 18 27-44 27-44 (56)
7 d1i76a_ d.92.1.11 (A:) Neutrop 2.6 3E+02 0.022 19.2 1.7 16 226-241 112-127 (163)
8 d3d31c1 f.58.1.1 (C:13-260) Su 2.6 9.7E+02 0.071 17.2 7.4 30 237-266 67-96 (248)
9 d2mrba_ g.46.1.1 (A:) Metallot 2.6 4.2E+02 0.031 13.2 1.7 9 2-10 9-17 (31)
10 d1q90d_ f.32.1.1 (D:) Subunit 2.5 4.5E+02 0.033 18.9 2.7 50 27-78 91-140 (156)
No 1
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=28.10 E-value=38 Score=19.76 Aligned_cols=27 Identities=19% Similarity=0.480 Sum_probs=19.7
Q ss_pred cchhHHHHHHHHHHHHHHHhHhhHHHHhh
Q 043547 23 AAHLKFVSIFIIFFTSVIGVSLPVVLARY 51 (326)
Q Consensus 23 ~~~~ki~~~~~i~~~sl~g~~lP~~~~~~ 51 (326)
.-.+|+.++.+++++|-++ .|+++.|.
T Consensus 15 ~Nk~rLla~m~~~fGsgfa--~PF~ivRh 41 (46)
T d1v54l_ 15 ENKWRLLAMMTLFFGSGFA--APFFIVRH 41 (46)
T ss_dssp SSHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcccc--chHHHHHH
Confidence 3467888888899888776 59666553
No 2
>d2bs2c1 f.21.2.1 (C:1-254) Fumarate reductase respiratory complex cytochrome b subunit, FrdC {Wolinella succinogenes [TaxId: 844]}
Probab=26.50 E-value=50 Score=26.66 Aligned_cols=68 Identities=3% Similarity=-0.204 Sum_probs=38.0
Q ss_pred CcchhHHHHhhhhchhhhhhhccccc--------HhhHhhhhhhhhcCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 043547 57 SYDKATLIIKCFAAGVILSTSLVHVL--------PDAFDALSDCQVASKHPWRDFPFAGLVTLIGALLALLVDITA 124 (326)
Q Consensus 57 ~~~~~l~~~~~fa~GvlL~~aflhLL--------Pea~e~~~~~~~~~~~~~~~~p~~~~~~~~Gf~l~~lie~~~ 124 (326)
+++-.+..+.+.+|=++..-.+.||+ ||+++...+.+..........|+...+..+++++.+++--..
T Consensus 21 ~~~~~l~~l~slTGlvL~lFl~~Hm~~n~~il~g~eafn~~a~~l~~~~~~~~~~p~l~~i~~~~l~~~ll~H~~~ 96 (254)
T d2bs2c1 21 RMPAKLDWWQSATGLFLGLFMIGHMFFVSTILLGDNVMLWVTKKFELDFIFEGGKPIVVSFLAAFVFAVFIAHAFL 96 (254)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCHHHHHHHHHHTTCTTTSSSCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhcccccCCccHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777666665556666765 677776665442101111234666555666666666665444
No 3
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=13.54 E-value=79 Score=23.86 Aligned_cols=23 Identities=39% Similarity=0.814 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhHhhHHHHhhhc
Q 043547 30 SIFIIFFTSVIGVSLPVVLARYLQ 53 (326)
Q Consensus 30 ~~~~i~~~sl~g~~lP~~~~~~~~ 53 (326)
.++.+.+++++|..+| ++.||++
T Consensus 119 l~~~~~ia~~~G~~lP-lll~klg 141 (173)
T d2yvxa3 119 LVLIVFFANLVGAMLP-FLLRRLG 141 (173)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHTS
T ss_pred HHHHHHHHHHHHHHHH-HHHHHhC
Confidence 3445677899999999 5667764
No 4
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=5.53 E-value=2.9e+02 Score=15.77 Aligned_cols=18 Identities=22% Similarity=0.606 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043547 291 MEGLLGGLSSGILIYMGL 308 (326)
Q Consensus 291 ~~~il~alaaGtflYV~~ 308 (326)
+.++..++++|.|=||+.
T Consensus 17 ~~~~~~~~~~~~fHYv~v 34 (45)
T d1kqfb2 17 AAGFIATFAGLIFHYIGI 34 (45)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhee
Confidence 345566778888889875
No 5
>d1n1ua_ g.3.3.1 (A:) Kalata B1 {African plant (Oldenlandia affinis) [TaxId: 60225]}
Probab=2.76 E-value=3.3e+02 Score=13.66 Aligned_cols=9 Identities=44% Similarity=0.697 Sum_probs=6.1
Q ss_pred CCCccccCC
Q 043547 3 AGAGCAVDT 11 (326)
Q Consensus 3 ~~~~~~~~~ 11 (326)
|||.|-+++
T Consensus 1 agetc~ggt 9 (29)
T d1n1ua_ 1 AGETCVGGT 9 (29)
T ss_dssp CCCBCTTSC
T ss_pred CCceeeCCe
Confidence 577777664
No 6
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=2.69 E-value=4.6e+02 Score=15.52 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHhHh
Q 043547 27 KFVSIFIIFFTSVIGVSL 44 (326)
Q Consensus 27 ki~~~~~i~~~sl~g~~l 44 (326)
-.++.+.+++..++|.++
T Consensus 27 a~v~~iG~~i~G~IGf~I 44 (56)
T d1rh5b_ 27 AKVTALGISLLGIIGYII 44 (56)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445566667777554
No 7
>d1i76a_ d.92.1.11 (A:) Neutrophil collagenase (MMP-8) {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.60 E-value=3e+02 Score=19.16 Aligned_cols=16 Identities=25% Similarity=0.384 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 043547 226 VAALAFHQIFEGMGLG 241 (326)
Q Consensus 226 ~iAI~~Hk~~e~~alg 241 (326)
+..+++||+=++++|.
T Consensus 112 ~~~v~~HEiGHaLGL~ 127 (163)
T d1i76a_ 112 LFLVAAHEFGHSLGLA 127 (163)
T ss_dssp HHHHHHHHHHHHHTBC
T ss_pred heeehhhhhhhhhccC
Confidence 4679999999999984
No 8
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=2.58 E-value=9.7e+02 Score=17.23 Aligned_cols=30 Identities=20% Similarity=0.166 Sum_probs=14.3
Q ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHhHHH
Q 043547 237 GMGLGGCIAQAGFNFGTVAYMCFMFSVTTP 266 (326)
Q Consensus 237 ~~alg~~l~~~~~s~~~~~~~~~~fsl~tP 266 (326)
|+.++..+.+.+.+.++.+........+.|
T Consensus 67 g~~~a~~~~~~~~~~~~~~~~l~~~p~~ip 96 (248)
T d3d31c1 67 GAPTGYILARFDFPGKRLVESIIDVPVVVP 96 (248)
T ss_dssp HHHHHHHHTTCCCTTHHHHHHHHHGGGTSC
T ss_pred HHHHHHHHHhcccchhhHHHHHHHHHHHHH
Confidence 333444444555555554444444444444
No 9
>d2mrba_ g.46.1.1 (A:) Metallothionein {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=2.56 E-value=4.2e+02 Score=13.24 Aligned_cols=9 Identities=44% Similarity=0.863 Sum_probs=6.4
Q ss_pred CCCCccccC
Q 043547 2 AAGAGCAVD 10 (326)
Q Consensus 2 ~~~~~~~~~ 10 (326)
|||.+|.+.
T Consensus 9 aagdsc~ca 17 (31)
T d2mrba_ 9 AAGDSCTCA 17 (31)
T ss_dssp CSSSCCCCS
T ss_pred ccCCccccc
Confidence 677777766
No 10
>d1q90d_ f.32.1.1 (D:) Subunit IV of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.50 E-value=4.5e+02 Score=18.92 Aligned_cols=50 Identities=14% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHhhHHHHhhhcCCCCcchhHHHHhhhhchhhhhhhc
Q 043547 27 KFVSIFIIFFTSVIGVSLPVVLARYLQGKPSYDKATLIIKCFAAGVILSTSL 78 (326)
Q Consensus 27 ki~~~~~i~~~sl~g~~lP~~~~~~~~~~~~~~~~l~~~~~fa~GvlL~~af 78 (326)
|++.++++.++.++-.++| ++.+..+.+...++-+... .|..+++..+-+
T Consensus 91 kl~GVi~~~~~i~~L~~lP-~l~~~~~~~~~~~rp~~~~-~f~~~~~~l~~L 140 (156)
T d1q90d_ 91 KLLGVLLMAAVPAGLITVP-FIESINKFQNPYRRPIATI-LFLLGTLVAVWL 140 (156)
T ss_dssp HHHHHHHHHHHHHHHTTTT-TTTCSCCCCSGGGCHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHcccccccCccccHHHHH-HHHHHHHHHHHH
Done!