BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043548
         (385 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ZGR|A Chain A, Crystal Structure Of The Parkia Platycephala Seed Lectin
 pdb|1ZGR|B Chain B, Crystal Structure Of The Parkia Platycephala Seed Lectin
 pdb|1ZGS|A Chain A, Parkia Platycephala Seed Lectin In Complex With 5-Bromo-4-
           Chloro-3-Indolyl-A-D-Mannose
 pdb|1ZGS|B Chain B, Parkia Platycephala Seed Lectin In Complex With 5-Bromo-4-
           Chloro-3-Indolyl-A-D-Mannose
          Length = 447

 Score = 31.2 bits (69), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 8/80 (10%)

Query: 238 EVTVFEPTPKTSLRQAYALINSSHAMVGVHGAALTHSLFLRPGSVFVQVVPLGLEWVAEV 297
            +T + P   TS  +++++  +   +VG HG A     +L    +FVQ VP G      +
Sbjct: 103 NLTTYGPFGSTSGGESFSIPIADSVVVGFHGRA---GYYLDALGIFVQPVPHGT-----I 154

Query: 298 CFGTSAKAMGLDYMEYKINA 317
            FG      G D   +K+ +
Sbjct: 155 SFGPWGGPAGDDAFNFKVGS 174


>pdb|3D1N|I Chain I, Structure Of Human Brn-5 Transcription Factor In Complex
          With Corticotrophin-Releasing Hormone Gene Promoter
 pdb|3D1N|J Chain J, Structure Of Human Brn-5 Transcription Factor In Complex
          With Corticotrophin-Releasing Hormone Gene Promoter
 pdb|3D1N|K Chain K, Structure Of Human Brn-5 Transcription Factor In Complex
          With Corticotrophin-Releasing Hormone Gene Promoter
 pdb|3D1N|L Chain L, Structure Of Human Brn-5 Transcription Factor In Complex
          With Corticotrophin-Releasing Hormone Gene Promoter
 pdb|3D1N|M Chain M, Structure Of Human Brn-5 Transcription Factor In Complex
          With Corticotrophin-Releasing Hormone Gene Promoter
 pdb|3D1N|N Chain N, Structure Of Human Brn-5 Transcription Factor In Complex
          With Corticotrophin-Releasing Hormone Gene Promoter
 pdb|3D1N|O Chain O, Structure Of Human Brn-5 Transcription Factor In Complex
          With Corticotrophin-Releasing Hormone Gene Promoter
 pdb|3D1N|P Chain P, Structure Of Human Brn-5 Transcription Factor In Complex
          With Corticotrophin-Releasing Hormone Gene Promoter
          Length = 151

 Score = 28.5 bits (62), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 21/46 (45%)

Query: 14 CSVNGPTTLDPTTSTFFLVDPAPASAEKIRPYPRKWENFVMQRIEE 59
           +  GP       S F  +D  P SA+K++P   KW N    R +E
Sbjct: 32 TATEGPAYSQSAISRFEKLDITPKSAQKLKPVLEKWLNEAELRNQE 77


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,658,280
Number of Sequences: 62578
Number of extensions: 479402
Number of successful extensions: 1154
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1153
Number of HSP's gapped (non-prelim): 3
length of query: 385
length of database: 14,973,337
effective HSP length: 101
effective length of query: 284
effective length of database: 8,652,959
effective search space: 2457440356
effective search space used: 2457440356
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)