Query 043548
Match_columns 385
No_of_seqs 270 out of 668
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 06:07:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043548.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043548hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4698 Uncharacterized conser 100.0 6.1E-79 1.3E-83 607.5 17.7 377 1-381 85-474 (475)
2 PF04577 DUF563: Protein of un 100.0 1.2E-30 2.7E-35 239.2 22.2 202 89-314 1-204 (206)
3 COG4421 Capsular polysaccharid 99.8 6.6E-20 1.4E-24 175.7 18.0 208 80-318 123-331 (368)
4 cd05212 NAD_bind_m-THF_DH_Cycl 92.4 1 2.2E-05 39.4 9.0 71 205-285 27-98 (140)
5 PRK14178 bifunctional 5,10-met 85.7 5.3 0.00012 39.0 9.2 73 205-287 151-224 (279)
6 PF02882 THF_DHG_CYH_C: Tetrah 84.5 4.7 0.0001 36.1 7.7 71 206-286 36-107 (160)
7 PRK14188 bifunctional 5,10-met 79.0 16 0.00035 36.0 9.8 71 206-286 158-229 (296)
8 cd01971 Nitrogenase_VnfN_like 76.5 5.2 0.00011 41.2 5.9 102 205-309 154-261 (427)
9 cd01080 NAD_bind_m-THF_DH_Cycl 76.3 9.7 0.00021 34.2 6.9 73 205-287 43-116 (168)
10 PRK14194 bifunctional 5,10-met 75.7 19 0.00042 35.5 9.3 72 205-286 158-230 (301)
11 PRK14179 bifunctional 5,10-met 73.0 27 0.00058 34.3 9.5 72 205-286 157-229 (284)
12 cd00316 Oxidoreductase_nitroge 72.4 15 0.00033 36.9 8.0 98 205-308 151-251 (399)
13 PRK14189 bifunctional 5,10-met 69.4 31 0.00067 33.8 9.0 72 205-286 157-229 (285)
14 TIGR02853 spore_dpaA dipicolin 68.1 26 0.00057 34.1 8.3 82 226-312 164-260 (287)
15 PRK14190 bifunctional 5,10-met 66.4 37 0.00081 33.2 8.9 72 205-286 157-229 (284)
16 PRK14191 bifunctional 5,10-met 65.5 37 0.00081 33.3 8.7 72 206-287 157-229 (285)
17 cd02696 MurNAc-LAA N-acetylmur 65.2 19 0.00041 31.7 6.2 47 227-273 33-82 (172)
18 PLN02897 tetrahydrofolate dehy 65.1 45 0.00097 33.6 9.3 71 206-286 214-285 (345)
19 PRK14170 bifunctional 5,10-met 64.8 36 0.00078 33.4 8.4 71 206-286 157-228 (284)
20 PF01520 Amidase_3: N-acetylmu 64.3 17 0.00036 32.1 5.7 47 227-273 32-81 (175)
21 cd01079 NAD_bind_m-THF_DH NAD 64.0 51 0.0011 30.6 8.8 76 205-286 61-155 (197)
22 COG0190 FolD 5,10-methylene-te 63.8 40 0.00086 33.0 8.4 72 205-286 155-227 (283)
23 PRK14182 bifunctional 5,10-met 63.3 56 0.0012 32.0 9.5 72 205-286 156-228 (282)
24 PRK14175 bifunctional 5,10-met 63.1 25 0.00055 34.4 7.1 72 206-287 158-230 (286)
25 PRK08306 dipicolinate synthase 62.9 29 0.00063 34.0 7.6 95 207-313 153-262 (296)
26 PRK14171 bifunctional 5,10-met 62.6 59 0.0013 31.9 9.5 70 207-286 160-230 (288)
27 TIGR02883 spore_cwlD N-acetylm 62.4 23 0.00049 32.2 6.3 47 227-273 34-97 (189)
28 PF05222 AlaDh_PNT_N: Alanine 62.2 59 0.0013 28.0 8.5 93 220-316 11-117 (136)
29 PRK14180 bifunctional 5,10-met 62.1 42 0.00092 32.8 8.4 71 206-286 158-229 (282)
30 PRK14169 bifunctional 5,10-met 61.9 60 0.0013 31.8 9.4 70 207-286 157-227 (282)
31 PF00389 2-Hacid_dh: D-isomer 61.7 19 0.0004 30.4 5.3 78 226-311 9-87 (133)
32 PRK14177 bifunctional 5,10-met 61.4 45 0.00098 32.7 8.5 71 206-286 159-230 (284)
33 PLN02616 tetrahydrofolate dehy 61.4 56 0.0012 33.2 9.3 71 206-286 231-302 (364)
34 PRK14183 bifunctional 5,10-met 61.1 64 0.0014 31.6 9.4 71 206-286 157-228 (281)
35 cd01967 Nitrogenase_MoFe_alpha 60.5 49 0.0011 33.5 9.0 97 205-308 159-258 (406)
36 PRK14166 bifunctional 5,10-met 60.1 66 0.0014 31.5 9.3 71 206-286 157-228 (282)
37 PRK14186 bifunctional 5,10-met 59.6 67 0.0015 31.7 9.4 71 206-286 158-229 (297)
38 PRK14173 bifunctional 5,10-met 58.8 67 0.0015 31.5 9.2 71 206-286 155-226 (287)
39 PRK14172 bifunctional 5,10-met 58.4 52 0.0011 32.1 8.3 71 206-286 158-229 (278)
40 PRK13337 putative lipid kinase 58.3 65 0.0014 31.4 9.1 70 222-291 18-93 (304)
41 PRK08306 dipicolinate synthase 57.9 45 0.00098 32.6 7.9 83 225-314 14-121 (296)
42 COG1597 LCB5 Sphingosine kinas 56.7 89 0.0019 30.7 9.8 93 209-309 6-104 (301)
43 PLN02516 methylenetetrahydrofo 56.5 81 0.0018 31.2 9.4 71 206-286 167-238 (299)
44 PRK14187 bifunctional 5,10-met 56.4 80 0.0017 31.1 9.3 71 206-286 160-231 (294)
45 PLN02928 oxidoreductase family 56.2 1.9E+02 0.0042 28.9 12.3 136 226-384 172-339 (347)
46 PRK14181 bifunctional 5,10-met 55.6 86 0.0019 30.8 9.3 71 206-286 153-228 (287)
47 PF00148 Oxidored_nitro: Nitro 55.4 20 0.00044 36.1 5.2 97 205-307 143-243 (398)
48 PRK10319 N-acetylmuramoyl-l-al 55.3 26 0.00057 34.3 5.8 56 229-289 92-150 (287)
49 cd01981 Pchlide_reductase_B Pc 55.2 56 0.0012 33.5 8.5 103 205-310 161-266 (430)
50 PRK13059 putative lipid kinase 55.1 77 0.0017 30.8 9.0 68 223-291 19-92 (295)
51 PRK14174 bifunctional 5,10-met 54.3 85 0.0018 30.9 9.1 71 206-286 159-234 (295)
52 COG3959 Transketolase, N-termi 53.1 25 0.00053 33.4 4.8 50 208-260 173-226 (243)
53 cd01980 Chlide_reductase_Y Chl 52.1 22 0.00048 36.5 4.9 95 206-309 159-254 (416)
54 PRK14168 bifunctional 5,10-met 51.5 1.1E+02 0.0023 30.3 9.3 72 205-286 160-236 (297)
55 PF13271 DUF4062: Domain of un 51.3 40 0.00087 26.3 5.2 46 227-272 17-65 (83)
56 cd01972 Nitrogenase_VnfE_like 51.1 34 0.00074 35.2 6.1 102 205-309 160-266 (426)
57 PRK14193 bifunctional 5,10-met 51.0 1.1E+02 0.0024 30.0 9.2 72 205-286 157-231 (284)
58 PRK02910 light-independent pro 50.6 58 0.0013 34.5 7.9 102 205-309 157-261 (519)
59 PRK14184 bifunctional 5,10-met 50.3 94 0.002 30.5 8.6 71 206-286 157-232 (286)
60 PRK13055 putative lipid kinase 50.0 98 0.0021 30.7 9.0 93 210-309 7-106 (334)
61 TIGR02667 moaB_proteo molybden 48.7 48 0.001 29.5 5.9 75 205-279 3-83 (163)
62 PRK10792 bifunctional 5,10-met 48.6 45 0.00098 32.7 6.1 72 206-287 159-231 (285)
63 PRK14167 bifunctional 5,10-met 48.4 1.1E+02 0.0024 30.2 8.9 71 206-286 157-232 (297)
64 PF03698 UPF0180: Uncharacteri 46.5 28 0.00061 27.5 3.6 43 224-277 9-51 (80)
65 PRK14185 bifunctional 5,10-met 44.9 1.6E+02 0.0034 29.1 9.3 71 206-286 157-232 (293)
66 TIGR00177 molyb_syn molybdenum 44.4 37 0.00081 29.3 4.4 52 222-273 26-80 (144)
67 TIGR03702 lip_kinase_YegS lipi 44.3 1.7E+02 0.0038 28.2 9.6 68 224-291 15-90 (293)
68 PRK02261 methylaspartate mutas 44.3 99 0.0021 26.7 7.0 54 205-262 2-55 (137)
69 TIGR00561 pntA NAD(P) transhyd 44.2 2E+02 0.0043 30.7 10.5 93 220-316 13-117 (511)
70 PRK14176 bifunctional 5,10-met 44.1 60 0.0013 31.9 6.2 72 205-286 163-235 (287)
71 PRK13054 lipid kinase; Reviewe 44.1 2.1E+02 0.0046 27.7 10.2 82 208-291 5-94 (300)
72 PF03193 DUF258: Protein of un 41.9 49 0.0011 29.6 4.8 53 226-278 2-58 (161)
73 PRK10964 ADP-heptose:LPS hepto 41.8 1.2E+02 0.0027 29.4 8.2 63 206-268 178-262 (322)
74 PRK12548 shikimate 5-dehydroge 41.4 1.5E+02 0.0032 28.8 8.5 94 208-311 152-256 (289)
75 COG2185 Sbm Methylmalonyl-CoA 41.4 1.3E+02 0.0028 26.5 7.2 54 204-261 10-63 (143)
76 PRK06932 glycerate dehydrogena 40.8 3.7E+02 0.0079 26.5 12.3 133 226-384 160-314 (314)
77 PRK13243 glyoxylate reductase; 40.3 3.8E+02 0.0083 26.6 12.6 130 226-382 163-314 (333)
78 PF10087 DUF2325: Uncharacteri 39.4 79 0.0017 25.3 5.4 68 224-312 11-80 (97)
79 CHL00076 chlB photochlorophyll 39.4 1.2E+02 0.0027 32.1 8.2 102 205-309 162-266 (513)
80 cd01968 Nitrogenase_NifE_I Nit 37.6 84 0.0018 32.0 6.5 97 206-309 158-257 (410)
81 cd00758 MoCF_BD MoCF_BD: molyb 36.8 55 0.0012 27.8 4.3 51 223-273 19-72 (133)
82 COG1703 ArgK Putative periplas 36.7 43 0.00092 33.3 3.9 45 226-270 133-177 (323)
83 COG1920 Predicted nucleotidylt 36.5 34 0.00073 31.8 2.9 58 250-314 104-163 (210)
84 TIGR01501 MthylAspMutase methy 36.3 51 0.0011 28.6 4.0 39 226-266 19-58 (134)
85 PRK13057 putative lipid kinase 36.3 1.9E+02 0.0042 27.7 8.5 67 224-291 14-84 (287)
86 PRK03094 hypothetical protein; 36.2 53 0.0012 26.0 3.7 21 224-244 9-29 (80)
87 cd01965 Nitrogenase_MoFe_beta_ 36.1 1.4E+02 0.003 30.7 7.8 101 205-309 154-274 (428)
88 TIGR00640 acid_CoA_mut_C methy 35.8 1.4E+02 0.0031 25.5 6.7 41 226-268 20-61 (132)
89 cd03129 GAT1_Peptidase_E_like 35.6 1.4E+02 0.003 27.3 7.0 66 205-272 28-93 (210)
90 PF12689 Acid_PPase: Acid Phos 35.2 56 0.0012 29.5 4.2 93 210-313 35-127 (169)
91 TIGR00147 lipid kinase, YegS/R 34.9 3E+02 0.0064 26.4 9.6 83 208-290 3-92 (293)
92 PF02737 3HCDH_N: 3-hydroxyacy 34.7 40 0.00087 30.3 3.2 77 226-309 94-173 (180)
93 PRK06436 glycerate dehydrogena 34.6 4.5E+02 0.0098 25.8 12.6 134 226-384 135-284 (303)
94 PLN02204 diacylglycerol kinase 34.5 2.4E+02 0.0052 30.7 9.4 91 178-275 139-234 (601)
95 smart00852 MoCF_biosynth Proba 34.4 66 0.0014 27.2 4.4 52 223-274 18-72 (135)
96 PRK09424 pntA NAD(P) transhydr 34.1 3.6E+02 0.0078 28.7 10.6 93 220-317 14-119 (509)
97 TIGR02193 heptsyl_trn_I lipopo 33.9 2E+02 0.0043 27.8 8.2 62 206-267 179-262 (319)
98 cd08191 HHD 6-hydroxyhexanoate 33.5 1.7E+02 0.0038 29.5 8.0 59 208-268 24-88 (386)
99 cd02410 archeal_CPSF_KH The ar 33.2 72 0.0016 28.1 4.4 79 205-290 7-88 (145)
100 PRK14192 bifunctional 5,10-met 32.1 1.6E+02 0.0034 28.8 7.1 87 181-287 144-231 (283)
101 KOG4698 Uncharacterized conser 31.2 8.2 0.00018 40.2 -2.1 97 220-319 192-290 (475)
102 TIGR00507 aroE shikimate 5-deh 30.7 2E+02 0.0044 27.4 7.6 51 257-311 176-234 (270)
103 PRK00258 aroE shikimate 5-dehy 30.6 1.3E+02 0.0029 28.9 6.3 53 255-311 181-241 (278)
104 PRK11790 D-3-phosphoglycerate 30.6 6.1E+02 0.013 26.0 11.7 139 226-384 164-320 (409)
105 PF03575 Peptidase_S51: Peptid 30.2 1.2E+02 0.0026 26.3 5.4 44 226-270 3-46 (154)
106 PRK11914 diacylglycerol kinase 29.8 1.4E+02 0.003 29.0 6.3 82 209-291 12-98 (306)
107 PRK09479 glpX fructose 1,6-bis 29.6 1.3E+02 0.0029 29.9 6.0 54 205-269 157-213 (319)
108 PF01976 DUF116: Protein of un 29.3 1.3E+02 0.0028 26.8 5.5 39 225-266 75-113 (158)
109 cd00032 CASc Caspase, interleu 27.3 87 0.0019 29.5 4.3 56 223-280 32-95 (243)
110 cd01817 RGS12_RBD Ubiquitin do 26.5 90 0.002 24.3 3.4 65 275-362 4-69 (73)
111 PRK10431 N-acetylmuramoyl-l-al 26.4 1.3E+02 0.0029 31.4 5.7 69 205-273 189-275 (445)
112 PF03358 FMN_red: NADPH-depend 26.1 1.6E+02 0.0034 25.0 5.4 54 208-264 2-75 (152)
113 cd08184 Fe-ADH3 Iron-containin 26.1 1.5E+02 0.0033 29.6 6.0 43 226-268 39-90 (347)
114 cd01976 Nitrogenase_MoFe_alpha 25.8 1.7E+02 0.0036 30.2 6.3 97 206-309 172-271 (421)
115 cd07409 MPP_CD73_N CD73 ecto-5 25.7 1.2E+02 0.0026 29.1 5.1 40 227-268 173-215 (281)
116 cd00886 MogA_MoaB MogA_MoaB fa 25.6 1E+02 0.0022 26.8 4.1 57 222-278 19-80 (152)
117 PRK09860 putative alcohol dehy 25.6 2.1E+02 0.0046 28.9 7.0 59 208-268 33-97 (383)
118 cd08192 Fe-ADH7 Iron-containin 25.6 2.2E+02 0.0048 28.5 7.1 59 208-268 26-90 (370)
119 cd08190 HOT Hydroxyacid-oxoaci 25.6 2.1E+02 0.0045 29.4 7.0 61 208-270 25-91 (414)
120 PRK15438 erythronate-4-phospha 25.5 1.5E+02 0.0032 30.3 5.8 75 206-287 116-207 (378)
121 TIGR01862 N2-ase-Ialpha nitrog 25.4 1.5E+02 0.0033 30.6 6.1 97 206-309 191-290 (443)
122 cd00885 cinA Competence-damage 25.4 99 0.0021 27.7 4.1 58 221-278 17-77 (170)
123 PRK15454 ethanol dehydrogenase 24.6 2.5E+02 0.0055 28.6 7.3 60 208-269 51-116 (395)
124 TIGR01284 alt_nitrog_alph nitr 24.5 1.6E+02 0.0034 30.8 5.9 97 206-309 199-298 (457)
125 TIGR00627 tfb4 transcription f 24.1 2E+02 0.0044 28.1 6.2 73 204-276 144-218 (279)
126 PF13478 XdhC_C: XdhC Rossmann 24.0 1.5E+02 0.0032 25.6 4.7 74 226-313 11-86 (136)
127 TIGR02638 lactal_redase lactal 23.7 2.3E+02 0.0051 28.5 6.9 59 208-268 31-95 (379)
128 TIGR02370 pyl_corrinoid methyl 23.6 3.4E+02 0.0074 24.7 7.4 60 205-268 83-143 (197)
129 COG2084 MmsB 3-hydroxyisobutyr 23.6 3.2E+02 0.0069 26.8 7.5 83 229-313 16-119 (286)
130 PRK00257 erythronate-4-phospha 23.3 1.7E+02 0.0037 29.8 5.8 74 207-287 117-207 (381)
131 PF13528 Glyco_trans_1_3: Glyc 23.1 5.5E+02 0.012 24.3 9.2 59 227-285 206-277 (318)
132 TIGR01278 DPOR_BchB light-inde 22.8 2.7E+02 0.0058 29.5 7.3 102 205-309 157-264 (511)
133 cd03466 Nitrogenase_NifN_2 Nit 22.7 1.4E+02 0.0031 30.7 5.1 99 205-309 154-275 (429)
134 cd01977 Nitrogenase_VFe_alpha 22.7 2E+02 0.0044 29.4 6.3 97 206-309 162-261 (415)
135 PF01870 Hjc: Archaeal hollida 22.6 1.9E+02 0.0042 23.1 4.8 33 225-269 3-35 (88)
136 PF00994 MoCF_biosynth: Probab 22.2 85 0.0018 26.8 2.9 53 221-273 15-70 (144)
137 cd08188 Fe-ADH4 Iron-containin 22.1 3E+02 0.0065 27.7 7.3 60 208-269 30-95 (377)
138 PRK09989 hypothetical protein; 22.0 1.5E+02 0.0033 27.8 4.9 49 224-272 16-64 (258)
139 TIGR02201 heptsyl_trn_III lipo 21.9 1.4E+02 0.003 29.3 4.7 40 247-288 248-287 (344)
140 TIGR01283 nifE nitrogenase mol 21.8 1.9E+02 0.0041 30.0 5.9 96 206-308 197-295 (456)
141 cd08183 Fe-ADH2 Iron-containin 21.8 3E+02 0.0066 27.6 7.2 57 208-269 24-85 (374)
142 PRK13581 D-3-phosphoglycerate 21.7 9.7E+02 0.021 25.4 13.1 134 226-384 153-306 (526)
143 cd02072 Glm_B12_BD B12 binding 21.5 1.3E+02 0.0029 25.8 3.9 39 226-266 17-56 (128)
144 PF02310 B12-binding: B12 bind 21.4 2.8E+02 0.0062 22.3 5.9 54 208-266 2-57 (121)
145 TIGR02964 xanthine_xdhC xanthi 21.4 1.2E+02 0.0026 28.9 4.0 92 204-313 98-193 (246)
146 PRK13762 tRNA-modifying enzyme 21.4 5.5E+02 0.012 25.4 8.8 105 204-313 127-256 (322)
147 PRK10680 molybdopterin biosynt 21.2 1.7E+02 0.0037 30.1 5.3 81 186-271 162-255 (411)
148 PRK14569 D-alanyl-alanine synt 21.2 2.4E+02 0.0053 27.2 6.2 61 206-268 3-66 (296)
149 PRK12749 quinate/shikimate deh 21.2 4.5E+02 0.0098 25.5 8.1 95 207-311 149-253 (288)
150 PF01316 Arg_repressor: Argini 21.1 65 0.0014 24.7 1.7 21 220-240 17-37 (70)
151 cd08178 AAD_C C-terminal alcoh 21.1 2.4E+02 0.0052 28.7 6.4 59 208-268 23-87 (398)
152 PRK02842 light-independent pro 21.0 1.2E+02 0.0026 31.2 4.3 94 206-309 166-262 (427)
153 cd08551 Fe-ADH iron-containing 20.9 3.4E+02 0.0074 27.1 7.4 59 208-268 25-89 (370)
154 smart00115 CASc Caspase, inter 20.8 3.1E+02 0.0067 25.8 6.7 55 224-280 31-94 (241)
155 cd03789 GT1_LPS_heptosyltransf 20.8 2.5E+02 0.0054 26.5 6.1 41 247-289 186-226 (279)
156 cd01078 NAD_bind_H4MPT_DH NADP 20.7 4.4E+02 0.0095 23.4 7.5 70 208-286 54-128 (194)
157 PF02423 OCD_Mu_crystall: Orni 20.6 1.6E+02 0.0035 28.9 4.9 68 208-289 155-226 (313)
158 cd08179 NADPH_BDH NADPH-depend 20.5 2.8E+02 0.0062 27.8 6.7 60 208-268 25-90 (375)
159 PF03446 NAD_binding_2: NAD bi 20.2 2E+02 0.0044 25.0 5.0 83 228-313 16-118 (163)
No 1
>KOG4698 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6.1e-79 Score=607.45 Aligned_cols=377 Identities=41% Similarity=0.717 Sum_probs=350.6
Q ss_pred CccccCCCCCccceeeeCCeeecCCccEEEEECCC-----CCCccccCCCCCCcchhccCcceeEEEeeCC--CCCCCce
Q 043548 1 QISCDRSHQNYDICSVNGPTTLDPTTSTFFLVDPA-----PASAEKIRPYPRKWENFVMQRIEEVTISSGP--SSPKCEV 73 (385)
Q Consensus 1 ~i~Cd~~~~~~d~c~~~gd~r~~~~~~~~~~~~~~-----~~~~~~i~py~rk~~~~~m~~v~e~~~~~~~--~~~~C~~ 73 (385)
.|+||+++.++|+|+++||+|+|+.++|+++.... .+.+|+||||+||||..+|+.|+|+++...+ ...+|++
T Consensus 85 ~~~C~~~g~~s~~c~~kg~~r~h~~~~~~~~~~~~~~~~s~~~~e~ikpy~rk~~~~vmp~vre~~l~~~~~~~~r~c~v 164 (475)
T KOG4698|consen 85 SFFCDRSGTRSDFCEMKGDVRTHPDSSTVLLTLGRLLTFSGRLVEKIKPYTRKGETWVMPEVRELNLLVRPGSEIRRCDV 164 (475)
T ss_pred eEEeeccccccchhhhcCccccCcchhhhhhhccchhhhccccchhcccccccccccccccccccceEEcCCcccceeee
Confidence 37999999999999999999999999999988764 5679999999999999999999999998776 3478999
Q ss_pred EEeccEEEEEecCCCCCcchhhhhhhHHHHHHhhhhCCCCcEEEEEecCCCchhhHHHHHHHHhcCCCceecCCCCCeee
Q 043548 74 QHNVPALVFSVGGYTGNFWHEFNDGFVPLFITVHSIFPNQEIVLVIDKARGWWISKYAELLHAFSKQPIILLDNDTATHC 153 (385)
Q Consensus 74 ~~~~pavv~s~~gy~~N~~H~~~D~liPlf~t~~~~~~~~~v~lvi~d~~~~w~~~y~~ll~~ls~~~ii~l~~~~~~~C 153 (385)
+|++|++||++|||++|.||+|+|+++|||++.++...+++++++|++..+||..+|.+++++||+||+++++++..+||
T Consensus 165 ~~~~pa~vfs~Gg~tgn~yhdf~d~~ipL~it~~~~~~n~ev~~li~~~~~ww~~kf~Dvv~~lSn~~~v~~~~~~~Thc 244 (475)
T KOG4698|consen 165 NHEVPAIVFSTGGYTGNEYHDFNDGIIPLFITEAELRFNKEVQFLITETHSWWDMKFGDVVRQLSNYPVVDFDAELRTHC 244 (475)
T ss_pred ecccchheeecCCcchhhHHHHHhhhhhhhcccchhcccccEEEEEEEcchhhhhhHHHHHHhcCCCceEEecCCceEEE
Confidence 99999999999999999999999999999999994222999999999999999999999999999999999999999999
Q ss_pred ecceEecccccCCCccCCCCCCCC--ccHHHHHHHHHHHhCCCC---cCCCCCCCCCCCeEEEEEccCCCCcccccHHHH
Q 043548 154 FTSATIGLISHGYMTVDPTLMPNS--KTFVHFRGLLDEAYSHGR---IRNRNNSPSTRPRLMLMSRRGGLGRVILNQVEV 228 (385)
Q Consensus 154 F~~aivGl~~~~~l~idp~~~p~~--~~~~~F~~fl~~~~~l~~---~~~~~~~~~~~prv~~isR~~~~~R~i~Ne~ev 228 (385)
|++++|||..|.+++++|+..|.+ .+|.+|++++..+|+... ..+. .+..++||+++++|.++ |.|+||+||
T Consensus 245 F~~~~vgL~~h~~y~v~~t~~~~~~~~s~~~fr~~l~~a~~~~i~~~~~t~-~~~~kkpri~~lsR~~~--r~Ilne~el 321 (475)
T KOG4698|consen 245 FKEAIVGLVSHFPYAVNPTQPPPNGTLSMLDFRNLLDKALSPRIPEANVTA-PEPWKKPRITILSRAGS--RAILNEDEL 321 (475)
T ss_pred eeeeeeeeeecccccccCCcCCCccccccccHHHHHHHHhcccccccccCC-cChhhCCceEEEecccc--hhhhcchhh
Confidence 999999999999999999988776 899999999999998632 1111 12235799999999998 999999999
Q ss_pred HHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeechhhhhhhhccCCCcEEEEEeeCC-ccccccccHHHHHhhcC
Q 043548 229 KRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHGAALTHSLFLRPGSVFVQVVPLG-LEWVAEVCFGTSAKAMG 307 (385)
Q Consensus 229 ~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHGAgLtn~lFl~pgs~viEi~P~g-~~~~~~~~y~~~A~~~g 307 (385)
.+++++.||+|.++++. ..++.+|+++.+++|||||+|||||||++|+||++.+|||.|+| .+|.+..+|..+|+.|+
T Consensus 322 ~~~~~~~gf~v~~~~~~-~t~v~~~~~i~~s~~vmiGvHGa~lth~lfl~~~~~~iqi~pcg~~~w~a~~a~~~p~k~~~ 400 (475)
T KOG4698|consen 322 PRMLEDIGFEVSVLRPD-RTEVAKQLRITNSSDVMIGVHGAGLTHLLFLPPWAGVIQIYPCGDPGWAAKLARLRPAKYMT 400 (475)
T ss_pred hHHHHhCCCceEEeccc-ccchhhhhheeeccceeeeccCccceeEEecCCcceEEEEEECCCccchhhhhhccccceec
Confidence 99999999999999885 39999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CcEEEEEecccccchhhhcCCCCccccCCccccCCCcchhhhhhhhcCCceEEchHhHHHHHHHHHHHHHhhhh
Q 043548 308 LDYMEYKINAEESSLIEKYNKNDTVIKDPVAFRGKSWSDAAMNIYLKEQNVKLDLFRFREYLKKVYKKAKRFMD 381 (385)
Q Consensus 308 l~Y~~y~~~~~essl~~~y~~d~~v~~dP~~~~~~gw~~~~~~~yl~~Qdv~ldi~rF~~~L~~a~~~~~~~~~ 381 (385)
++|.+|+|.++||+|.++|++||+++.||.+..++||+..++++|+..|+|++|+.||++.+.+|+...+.+|+
T Consensus 401 l~y~~ykI~~~es~l~~~y~~d~~~v~dp~s~~~~~f~~~k~~~yl~~q~v~ld~nRf~~~~~~a~~~~~~~~~ 474 (475)
T KOG4698|consen 401 LEYAEYKIRAEESELYHKYGGDNTIVFDPISFQKKGFEETKKKVYLELQAVRLDINRFRKTLVKAYLKEITQLG 474 (475)
T ss_pred cccceeEEeecccceeeeccCCCceecccceeccccceeeeeeeeEeEeeeehhhhhcccchhHHHHHHHHhhc
Confidence 99999999999999999999999999999999999998877789999999999999999999999999988853
No 2
>PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61. Sequences are further processed into a mature form.; GO: 0016757 transferase activity, transferring glycosyl groups
Probab=99.97 E-value=1.2e-30 Score=239.20 Aligned_cols=202 Identities=25% Similarity=0.413 Sum_probs=153.5
Q ss_pred CCcchhhhhhhHHHHHHhhhhCCCCcEEEEEecCCCchhhH-HHHHHHHhcC-CCceecCCCCCeeeecceEecccccCC
Q 043548 89 GNFWHEFNDGFVPLFITVHSIFPNQEIVLVIDKARGWWISK-YAELLHAFSK-QPIILLDNDTATHCFTSATIGLISHGY 166 (385)
Q Consensus 89 ~N~~H~~~D~liPlf~t~~~~~~~~~v~lvi~d~~~~w~~~-y~~ll~~ls~-~~ii~l~~~~~~~CF~~aivGl~~~~~ 166 (385)
.|+||++.| ++|.+.+++++.++++..+++.+... ..+ +.++|+.|+. ...+.+. .++..||++++++......
T Consensus 1 ~~~gH~l~d-~l~~l~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~l~~lg~~~~~i~~~-~~~~~~~~~l~~~~~~~~~ 76 (206)
T PF04577_consen 1 NNFGHFLID-FLPRLWYLPQYIPDSDIIILVPDDFD--NPPFIREILELLGIPENRIKID-SDEPVCFERLIVPSPPYSP 76 (206)
T ss_pred CCCcEEHHH-HHHHHHHHHHHCCCCCeEEEEcCCcc--ccHHHHHHHHHcCCCccEEEEc-CCCeEEECEEEEeCCCccc
Confidence 488999999 67777888887555666677655221 223 3478877773 3333222 3478999999987554311
Q ss_pred CccCCCCCCCCccHHHHHHHHHHHhCCCCcCCCCCCCCCCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCC
Q 043548 167 MTVDPTLMPNSKTFVHFRGLLDEAYSHGRIRNRNNSPSTRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTP 246 (385)
Q Consensus 167 l~idp~~~p~~~~~~~F~~fl~~~~~l~~~~~~~~~~~~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~ 246 (385)
.. ........|++++++.++++. ..+||++|++|+++..|++.||+||++.+++.||+++.. +
T Consensus 77 ~~------~~~~~~~~~~~~~~~~~~~~~--------~~~p~i~~i~R~~~~~R~i~Ne~el~~~l~~~~~~~v~~---~ 139 (206)
T PF04577_consen 77 SD------FNPSFFPALRDRIRRKLNLPP--------PKRPRILYISRRKSGSRRILNEDELLEILKKYGFEVVDP---E 139 (206)
T ss_pred cC------cCchHHHHHHHHHHHHhCCcc--------cCCCeEEEEecCCCCCCcCcCHHHHHHHHhhCCeEEEeC---C
Confidence 11 112333478999999998632 146799999995555699999999999999999887753 3
Q ss_pred CCCHHHHHHHHhcCCEEEeechhhhhhhhccCCCcEEEEEeeCCccccccccHHHHHhhcCCcEEEEE
Q 043548 247 KTSLRQAYALINSSHAMVGVHGAALTHSLFLRPGSVFVQVVPLGLEWVAEVCFGTSAKAMGLDYMEYK 314 (385)
Q Consensus 247 ~~s~~eq~~l~~~advlVGvHGAgLtn~lFl~pgs~viEi~P~g~~~~~~~~y~~~A~~~gl~Y~~y~ 314 (385)
++|+.||++++++||++||+|||||+|++|||||+.||||.|... ...+|..+|+.+|++|..+.
T Consensus 140 ~~s~~eqv~~~~~a~viig~hGs~l~n~~F~~~~s~viei~~~~~---~~~~~~~~a~~~~~~y~~v~ 204 (206)
T PF04577_consen 140 DLSFEEQVKLFASAKVIIGPHGSALTNLLFMPPGSTVIEIFPPNY---YNRHYRNLAQALGIHYYAVY 204 (206)
T ss_pred CCCHHHHHHHhcCCCEEEecCchHhheeeecCCCCEEEEEeCCCC---CCHHHHHHHHHcCCeEEEEe
Confidence 899999999999999999999999999999999999999987753 34459999999999999764
No 3
>COG4421 Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism]
Probab=99.84 E-value=6.6e-20 Score=175.65 Aligned_cols=208 Identities=22% Similarity=0.297 Sum_probs=140.5
Q ss_pred EEEEecCCCCCcchhhhhhhHHHHHHhhhhCCCCcEEEEEecCCCchhhHHHHHHHHhc-CCCceecCCCCCeeeecceE
Q 043548 80 LVFSVGGYTGNFWHEFNDGFVPLFITVHSIFPNQEIVLVIDKARGWWISKYAELLHAFS-KQPIILLDNDTATHCFTSAT 158 (385)
Q Consensus 80 vv~s~~gy~~N~~H~~~D~liPlf~t~~~~~~~~~v~lvi~d~~~~w~~~y~~ll~~ls-~~~ii~l~~~~~~~CF~~ai 158 (385)
.||.-.|++.||-|++.| .+|..+.++..---.+-.|+.....+ |. .+++..+. +.++|.. ...+|-..++
T Consensus 123 ~v~~~~~~~~~Yghflle-~Lp~l~~i~~l~i~~~~pLl~P~~~~-wq---adll~m~~~~~~ii~~---~p~V~~~~av 194 (368)
T COG4421 123 AVFKEWGFSFEYGHFLLE-NLPYLWQIKSLGILSDPPLLYPRLTE-WQ---ADLLFMAGPDCPIIAT---APAVPLGPAV 194 (368)
T ss_pred ceecccccccccchhHHh-hhHHHHHHhhhcccccCcccCCcchH-HH---HhHHhhcCCCCceeec---ccceeecccc
Confidence 466677789999999999 88888777765001222233322222 21 24666655 6677755 3556655544
Q ss_pred ecccccCCCccCCCCCCCCccHHHHHHHHHHHhCCCCcCCCCCCCCCCCeEEEEEccCCCCcccccHHHHHHHHHHCCCE
Q 043548 159 IGLISHGYMTVDPTLMPNSKTFVHFRGLLDEAYSHGRIRNRNNSPSTRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFE 238 (385)
Q Consensus 159 vGl~~~~~l~idp~~~p~~~~~~~F~~fl~~~~~l~~~~~~~~~~~~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~ 238 (385)
+.-. .++ . -+..++.... .++.-. .+++..++.+|+||+..+.|+++||+||...+++.||.
T Consensus 195 l~~~------~s~------~---~~ha~l~~~~--eR~~~~-~~~~~~adkiYVSR~~qS~R~lvnE~evE~~~q~~G~~ 256 (368)
T COG4421 195 LPVS------GSP------R---YTHALLAWKD--ERVIAI-KGKGKVADKIYVSRKAQSMRVLVNEEEVERLLQRSGLT 256 (368)
T ss_pred cCCC------CCc------h---hhhHHHHHHh--hhhhcc-cCCCCCcceEEEechhhHHHHhhCHHHHHHHHHhcCcE
Confidence 3211 111 1 1222333221 111111 23456788999999887789999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHhcCCEEEeechhhhhhhhccCCCcEEEEEeeCCccccccccHHHHHhhcCCcEEEEEeccc
Q 043548 239 VTVFEPTPKTSLRQAYALINSSHAMVGVHGAALTHSLFLRPGSVFVQVVPLGLEWVAEVCFGTSAKAMGLDYMEYKINAE 318 (385)
Q Consensus 239 v~~~~~~~~~s~~eq~~l~~~advlVGvHGAgLtn~lFl~pgs~viEi~P~g~~~~~~~~y~~~A~~~gl~Y~~y~~~~~ 318 (385)
++..| +++..||+++|+.|.||+|.||+||.|.+|+++|+.||||-|-.. ..+..+-..+.-|+..|..+.+.+.
T Consensus 257 IVrPE---tl~~~eQ~~LFr~AkvIvG~~GS~laNavF~~~~~kvvEI~~~~~--~~~s~~vr~~~~~~g~~~~~~ve~q 331 (368)
T COG4421 257 IVRPE---TLGPREQARLFRKAKVIVGPHGSGLANAVFAAPGCKVVEIQPGTT--NFRSFWVRMANYMSGDYYPGYVEHQ 331 (368)
T ss_pred EEech---hcCHHHHHHHhhcceEEeccccchhhhheecCCCceEEEeccCCC--cchHHHHHHhhhcccceeecccccC
Confidence 99764 899999999999999999999999999999999999999999432 1455565556555555555555443
No 4
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=92.40 E-value=1 Score=39.37 Aligned_cols=71 Identities=11% Similarity=0.224 Sum_probs=53.0
Q ss_pred CCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeechhh-hhhhhccCCCcEE
Q 043548 205 TRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHGAA-LTHSLFLRPGSVF 283 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHGAg-Ltn~lFl~pgs~v 283 (385)
..-+++++.|+.. .-..+..+|.+.|..|...+.. +-+++| .+++|||+|..-|.. +-..=|++||++|
T Consensus 27 ~gk~v~VvGrs~~------vG~pla~lL~~~gatV~~~~~~-t~~l~~---~v~~ADIVvsAtg~~~~i~~~~ikpGa~V 96 (140)
T cd05212 27 DGKKVLVVGRSGI------VGAPLQCLLQRDGATVYSCDWK-TIQLQS---KVHDADVVVVGSPKPEKVPTEWIKPGATV 96 (140)
T ss_pred CCCEEEEECCCch------HHHHHHHHHHHCCCEEEEeCCC-CcCHHH---HHhhCCEEEEecCCCCccCHHHcCCCCEE
Confidence 3458888987765 3467777888889999988642 334544 689999999988865 3445589999999
Q ss_pred EE
Q 043548 284 VQ 285 (385)
Q Consensus 284 iE 285 (385)
|-
T Consensus 97 id 98 (140)
T cd05212 97 IN 98 (140)
T ss_pred EE
Confidence 84
No 5
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.71 E-value=5.3 Score=39.00 Aligned_cols=73 Identities=16% Similarity=0.284 Sum_probs=54.9
Q ss_pred CCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEE
Q 043548 205 TRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHG-AALTHSLFLRPGSVF 283 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHG-AgLtn~lFl~pgs~v 283 (385)
..-+++++.|....+ .-+..++...|..|.+.... + ....+.+.+||++|+.=| +++-..=+.+||++|
T Consensus 151 ~Gk~V~ViGrs~~vG------rpla~lL~~~~atVtv~hs~-t---~~L~~~~~~ADIvI~Avgk~~lv~~~~vk~GavV 220 (279)
T PRK14178 151 AGKRAVVVGRSIDVG------RPMAALLLNADATVTICHSK-T---ENLKAELRQADILVSAAGKAGFITPDMVKPGATV 220 (279)
T ss_pred CCCEEEEECCCcccc------HHHHHHHHhCCCeeEEEecC-h---hHHHHHHhhCCEEEECCCcccccCHHHcCCCcEE
Confidence 345889999887644 34556677789998887532 2 234456789999999999 877777788999999
Q ss_pred EEEe
Q 043548 284 VQVV 287 (385)
Q Consensus 284 iEi~ 287 (385)
|.+-
T Consensus 221 IDVg 224 (279)
T PRK14178 221 IDVG 224 (279)
T ss_pred EEee
Confidence 9874
No 6
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=84.49 E-value=4.7 Score=36.08 Aligned_cols=71 Identities=18% Similarity=0.404 Sum_probs=47.7
Q ss_pred CCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEEE
Q 043548 206 RPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHG-AALTHSLFLRPGSVFV 284 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHG-AgLtn~lFl~pgs~vi 284 (385)
.-++++|.|....+ .-+..+|.+.|..|.+.... +..+++ ...+|||+|..-| ++|-..=|.+||++||
T Consensus 36 Gk~v~VvGrs~~VG------~Pla~lL~~~~atVt~~h~~-T~~l~~---~~~~ADIVVsa~G~~~~i~~~~ik~gavVI 105 (160)
T PF02882_consen 36 GKKVVVVGRSNIVG------KPLAMLLLNKGATVTICHSK-TKNLQE---ITRRADIVVSAVGKPNLIKADWIKPGAVVI 105 (160)
T ss_dssp T-EEEEE-TTTTTH------HHHHHHHHHTT-EEEEE-TT-SSSHHH---HHTTSSEEEE-SSSTT-B-GGGS-TTEEEE
T ss_pred CCEEEEECCcCCCC------hHHHHHHHhCCCeEEeccCC-CCcccc---eeeeccEEeeeeccccccccccccCCcEEE
Confidence 34889999987533 45677888889999988542 444555 4579999998888 6788888999999999
Q ss_pred EE
Q 043548 285 QV 286 (385)
Q Consensus 285 Ei 286 (385)
-+
T Consensus 106 Dv 107 (160)
T PF02882_consen 106 DV 107 (160)
T ss_dssp E-
T ss_pred ec
Confidence 76
No 7
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.01 E-value=16 Score=35.99 Aligned_cols=71 Identities=15% Similarity=0.310 Sum_probs=52.7
Q ss_pred CCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEEE
Q 043548 206 RPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHG-AALTHSLFLRPGSVFV 284 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHG-AgLtn~lFl~pgs~vi 284 (385)
.-++++|.|.+..+ .-++..|.+.|+.|.+.+.. +.+++ ++..+|||+|.+=| +.+-...|++||++||
T Consensus 158 Gk~V~viGrs~~mG------~PmA~~L~~~g~tVtv~~~r-T~~l~---e~~~~ADIVIsavg~~~~v~~~~lk~GavVI 227 (296)
T PRK14188 158 GLNAVVIGRSNLVG------KPMAQLLLAANATVTIAHSR-TRDLP---AVCRRADILVAAVGRPEMVKGDWIKPGATVI 227 (296)
T ss_pred CCEEEEEcCCcchH------HHHHHHHHhCCCEEEEECCC-CCCHH---HHHhcCCEEEEecCChhhcchheecCCCEEE
Confidence 45889999887643 45667777889999988522 33443 45678999887766 5677788899999999
Q ss_pred EE
Q 043548 285 QV 286 (385)
Q Consensus 285 Ei 286 (385)
.+
T Consensus 228 Dv 229 (296)
T PRK14188 228 DV 229 (296)
T ss_pred Ec
Confidence 76
No 8
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=76.47 E-value=5.2 Score=41.21 Aligned_cols=102 Identities=18% Similarity=0.189 Sum_probs=69.4
Q ss_pred CCCeEEEEEccCC-CCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeec---hhhhhhhhccCCC
Q 043548 205 TRPRLMLMSRRGG-LGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVH---GAALTHSLFLRPG 280 (385)
Q Consensus 205 ~~prv~~isR~~~-~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvH---GAgLtn~lFl~pg 280 (385)
.+++|-+|..... ..-.--|.+|+.+.|++.|.++..+-+ ...++ |+++-+.+|.+-|.++ |..++..|.-+=|
T Consensus 154 ~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~~~-~~~~~-~ei~~~~~A~~niv~~~~~g~~~a~~L~~~~g 231 (427)
T cd01971 154 EPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNILFG-PESNG-EELRSIPKAQFNLVLSPWVGLEFAQHLEEKYG 231 (427)
T ss_pred CCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEEEC-CCCCH-HHHHhcccCcEEEEEcHhhHHHHHHHHHHHhC
Confidence 4566767754321 001225789999999999999966533 24565 8888898888655554 4456666666777
Q ss_pred cEEEEE--eeCCccccccccHHHHHhhcCCc
Q 043548 281 SVFVQV--VPLGLEWVAEVCFGTSAKAMGLD 309 (385)
Q Consensus 281 s~viEi--~P~g~~~~~~~~y~~~A~~~gl~ 309 (385)
.-.+.. +|+|++- ...++..+++.+|+.
T Consensus 232 iP~i~~~~~P~G~~~-t~~~l~~i~~~~g~~ 261 (427)
T cd01971 232 QPYIHSPTLPIGAKA-TAEFLRQVAKFAGIE 261 (427)
T ss_pred CceEecCCCccCHHH-HHHHHHHHHHHhCCC
Confidence 766665 7899642 356889999999975
No 9
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=76.32 E-value=9.7 Score=34.24 Aligned_cols=73 Identities=12% Similarity=0.196 Sum_probs=52.6
Q ss_pred CCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeechhhh-hhhhccCCCcEE
Q 043548 205 TRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHGAAL-THSLFLRPGSVF 283 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHGAgL-tn~lFl~pgs~v 283 (385)
...++++|...... ..-+++.|++.|.+|.+.+ -+.++..+.++.|||+|+.-|+.- -..=.+++|.++
T Consensus 43 ~gk~vlViG~G~~~------G~~~a~~L~~~g~~V~v~~----r~~~~l~~~l~~aDiVIsat~~~~ii~~~~~~~~~vi 112 (168)
T cd01080 43 AGKKVVVVGRSNIV------GKPLAALLLNRNATVTVCH----SKTKNLKEHTKQADIVIVAVGKPGLVKGDMVKPGAVV 112 (168)
T ss_pred CCCEEEEECCcHHH------HHHHHHHHhhCCCEEEEEE----CCchhHHHHHhhCCEEEEcCCCCceecHHHccCCeEE
Confidence 45688999886520 1347788888999887775 335677789999999999999952 222234778888
Q ss_pred EEEe
Q 043548 284 VQVV 287 (385)
Q Consensus 284 iEi~ 287 (385)
|.+-
T Consensus 113 IDla 116 (168)
T cd01080 113 IDVG 116 (168)
T ss_pred EEcc
Confidence 8884
No 10
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=75.67 E-value=19 Score=35.52 Aligned_cols=72 Identities=24% Similarity=0.369 Sum_probs=53.4
Q ss_pred CCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEE
Q 043548 205 TRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHG-AALTHSLFLRPGSVF 283 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHG-AgLtn~lFl~pgs~v 283 (385)
..-++++|.|.+..+ .-+...|.+.|+.|.+.... +.+++ +...+|||+|.+=| +++-...|++||++|
T Consensus 158 ~Gk~V~vIG~s~ivG------~PmA~~L~~~gatVtv~~~~-t~~l~---e~~~~ADIVIsavg~~~~v~~~~ik~GaiV 227 (301)
T PRK14194 158 TGKHAVVIGRSNIVG------KPMAALLLQAHCSVTVVHSR-STDAK---ALCRQADIVVAAVGRPRLIDADWLKPGAVV 227 (301)
T ss_pred CCCEEEEECCCCccH------HHHHHHHHHCCCEEEEECCC-CCCHH---HHHhcCCEEEEecCChhcccHhhccCCcEE
Confidence 345889999976533 45667788889999998542 33433 45688999887766 567777889999999
Q ss_pred EEE
Q 043548 284 VQV 286 (385)
Q Consensus 284 iEi 286 (385)
|.+
T Consensus 228 IDv 230 (301)
T PRK14194 228 IDV 230 (301)
T ss_pred EEe
Confidence 987
No 11
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.04 E-value=27 Score=34.26 Aligned_cols=72 Identities=15% Similarity=0.278 Sum_probs=53.2
Q ss_pred CCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEE
Q 043548 205 TRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHG-AALTHSLFLRPGSVF 283 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHG-AgLtn~lFl~pgs~v 283 (385)
..-++++|.|++..+| -+...|.+.|..|.+.... +-+ ..+..++|||+|.+=| +++-...|++||++|
T Consensus 157 ~Gk~v~vIG~S~ivG~------Pla~lL~~~gatVtv~~s~-t~~---l~~~~~~ADIVI~avg~~~~v~~~~ik~GavV 226 (284)
T PRK14179 157 EGKHAVVIGRSNIVGK------PMAQLLLDKNATVTLTHSR-TRN---LAEVARKADILVVAIGRGHFVTKEFVKEGAVV 226 (284)
T ss_pred CCCEEEEECCCCcCcH------HHHHHHHHCCCEEEEECCC-CCC---HHHHHhhCCEEEEecCccccCCHHHccCCcEE
Confidence 3458899999776443 4566777889999987432 333 3346789999888776 567778889999999
Q ss_pred EEE
Q 043548 284 VQV 286 (385)
Q Consensus 284 iEi 286 (385)
|.+
T Consensus 227 IDv 229 (284)
T PRK14179 227 IDV 229 (284)
T ss_pred EEe
Confidence 987
No 12
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=72.38 E-value=15 Score=36.90 Aligned_cols=98 Identities=19% Similarity=0.256 Sum_probs=69.7
Q ss_pred CCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEee---chhhhhhhhccCCCc
Q 043548 205 TRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGV---HGAALTHSLFLRPGS 281 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGv---HGAgLtn~lFl~pgs 281 (385)
.++.+-+|.-..... -|..|+.+.|++.|++|..+-+ ...+++ +++-+.+|++-|.+ +|..++..|=-+-|.
T Consensus 151 ~~~~vNlig~~~~~~---~d~~el~~ll~~~G~~v~~~~~-~~~s~~-~i~~~~~A~~nlv~~~~~g~~~a~~l~~~~g~ 225 (399)
T cd00316 151 EPGSVNLIGGYNLGG---GDLRELKRLLEEMGIRVNALFD-GGTTVE-ELRELGNAKLNLVLCRESGLYLARYLEEKYGI 225 (399)
T ss_pred CCCcEEEECCCCCch---hhHHHHHHHHHHcCCcEEEEcC-CCCCHH-HHHhhccCcEEEEecHhHHHHHHHHHHHHhCC
Confidence 456677777544321 5889999999999999987633 235554 45557777777666 567777777656677
Q ss_pred EEEEEeeCCccccccccHHHHHhhcCC
Q 043548 282 VFVQVVPLGLEWVAEVCFGTSAKAMGL 308 (385)
Q Consensus 282 ~viEi~P~g~~~~~~~~y~~~A~~~gl 308 (385)
-.+...|.|++. ...++..+|+.+|+
T Consensus 226 p~~~~~p~G~~~-t~~~l~~i~~~~g~ 251 (399)
T cd00316 226 PYILINPIGLEA-TDAFLRKLAELFGI 251 (399)
T ss_pred CeEEeCCcCHHH-HHHHHHHHHHHhCC
Confidence 667777999643 45789999999996
No 13
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=69.37 E-value=31 Score=33.83 Aligned_cols=72 Identities=17% Similarity=0.290 Sum_probs=52.9
Q ss_pred CCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEE
Q 043548 205 TRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHG-AALTHSLFLRPGSVF 283 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHG-AgLtn~lFl~pgs~v 283 (385)
..-++++|.|....+ .-+..+|.+.|..|...... +.++ -..+.+||++|..=| +++-+.=+++||++|
T Consensus 157 ~Gk~vvViGrs~iVG------kPla~lL~~~~atVt~~hs~-t~~l---~~~~~~ADIVV~avG~~~~i~~~~ik~gavV 226 (285)
T PRK14189 157 RGAHAVVIGRSNIVG------KPMAMLLLQAGATVTICHSK-TRDL---AAHTRQADIVVAAVGKRNVLTADMVKPGATV 226 (285)
T ss_pred CCCEEEEECCCCccH------HHHHHHHHHCCCEEEEecCC-CCCH---HHHhhhCCEEEEcCCCcCccCHHHcCCCCEE
Confidence 345889999987644 45667788889999877532 3333 356789999988777 456666788999999
Q ss_pred EEE
Q 043548 284 VQV 286 (385)
Q Consensus 284 iEi 286 (385)
|-+
T Consensus 227 IDV 229 (285)
T PRK14189 227 IDV 229 (285)
T ss_pred EEc
Confidence 876
No 14
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=68.05 E-value=26 Score=34.14 Aligned_cols=82 Identities=15% Similarity=0.106 Sum_probs=52.7
Q ss_pred HHHHHHHHHCCCEEEEecCCC------------CCCHHHHHHHHhcCCEEEeechhhhhh---hhccCCCcEEEEEeeCC
Q 043548 226 VEVKRVAEDTGFEVTVFEPTP------------KTSLRQAYALINSSHAMVGVHGAALTH---SLFLRPGSVFVQVVPLG 290 (385)
Q Consensus 226 ~ev~~~l~~~gf~v~~~~~~~------------~~s~~eq~~l~~~advlVGvHGAgLtn---~lFl~pgs~viEi~P~g 290 (385)
..+++.|+..|.+|.+.+... ..++.+.-+.+.++|++|-.=..++.+ +-.|++++.+|-+.-.-
T Consensus 164 ~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ii~~~~l~~~k~~aliIDlas~P 243 (287)
T TIGR02853 164 MTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALVLTADVLSKLPKHAVIIDLASKP 243 (287)
T ss_pred HHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHHhCHHHHhcCCCCeEEEEeCcCC
Confidence 345556666666666554321 013344456778999999866655533 22479999999986321
Q ss_pred ccccccccHHHHHhhcCCcEEE
Q 043548 291 LEWVAEVCFGTSAKAMGLDYME 312 (385)
Q Consensus 291 ~~~~~~~~y~~~A~~~gl~Y~~ 312 (385)
....| ..|+..|++..-
T Consensus 244 ----g~tdf-~~Ak~~G~~a~~ 260 (287)
T TIGR02853 244 ----GGTDF-EYAKKRGIKALL 260 (287)
T ss_pred ----CCCCH-HHHHHCCCEEEE
Confidence 34567 789999998873
No 15
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.41 E-value=37 Score=33.25 Aligned_cols=72 Identities=15% Similarity=0.278 Sum_probs=52.6
Q ss_pred CCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEE
Q 043548 205 TRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHG-AALTHSLFLRPGSVF 283 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHG-AgLtn~lFl~pgs~v 283 (385)
..-++++|.|+...+| =+..+|.+.|..|.+.... +.+ .-+.+++|||+|+.-| +++-..=|.+||++|
T Consensus 157 ~Gk~vvViGrS~iVG~------Pla~lL~~~~atVt~chs~-t~~---l~~~~~~ADIvI~AvG~p~~i~~~~ik~gavV 226 (284)
T PRK14190 157 SGKHVVVVGRSNIVGK------PVGQLLLNENATVTYCHSK-TKN---LAELTKQADILIVAVGKPKLITADMVKEGAVV 226 (284)
T ss_pred CCCEEEEECCCCccHH------HHHHHHHHCCCEEEEEeCC-chh---HHHHHHhCCEEEEecCCCCcCCHHHcCCCCEE
Confidence 3458899999887554 3556677778999887532 322 2357899999998766 466677778999999
Q ss_pred EEE
Q 043548 284 VQV 286 (385)
Q Consensus 284 iEi 286 (385)
|-+
T Consensus 227 IDv 229 (284)
T PRK14190 227 IDV 229 (284)
T ss_pred EEe
Confidence 987
No 16
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=65.45 E-value=37 Score=33.26 Aligned_cols=72 Identities=13% Similarity=0.213 Sum_probs=51.6
Q ss_pred CCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEEE
Q 043548 206 RPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHG-AALTHSLFLRPGSVFV 284 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHG-AgLtn~lFl~pgs~vi 284 (385)
.-++++|.|....+| -+..+|.+.|..|.+.... + .+..+.+.+|||+|+.-| ++|-..=|.+||++||
T Consensus 157 Gk~vvVvGrs~~VG~------Pla~lL~~~gAtVtv~hs~-t---~~l~~~~~~ADIvV~AvG~p~~i~~~~vk~GavVI 226 (285)
T PRK14191 157 GKDVVIIGASNIVGK------PLAMLMLNAGASVSVCHIL-T---KDLSFYTQNADIVCVGVGKPDLIKASMVKKGAVVV 226 (285)
T ss_pred CCEEEEECCCchhHH------HHHHHHHHCCCEEEEEeCC-c---HHHHHHHHhCCEEEEecCCCCcCCHHHcCCCcEEE
Confidence 458899999875443 3456677789999887431 2 233468899999988776 4555556779999999
Q ss_pred EEe
Q 043548 285 QVV 287 (385)
Q Consensus 285 Ei~ 287 (385)
.+=
T Consensus 227 DvG 229 (285)
T PRK14191 227 DIG 229 (285)
T ss_pred Eee
Confidence 873
No 17
>cd02696 MurNAc-LAA N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs
Probab=65.23 E-value=19 Score=31.72 Aligned_cols=47 Identities=19% Similarity=0.328 Sum_probs=36.7
Q ss_pred HHHHHHHHCCCEEEEecCC-CCCCHHHHHHHHhc--CCEEEeechhhhhh
Q 043548 227 EVKRVAEDTGFEVTVFEPT-PKTSLRQAYALINS--SHAMVGVHGAALTH 273 (385)
Q Consensus 227 ev~~~l~~~gf~v~~~~~~-~~~s~~eq~~l~~~--advlVGvHGAgLtn 273 (385)
.|.+.|++.|++|+..... ...++.+.+...++ +|++|..|-.+-.+
T Consensus 33 ~l~~~L~~~G~~v~~~r~~~~~~~l~~r~~~an~~~~d~~islH~na~~~ 82 (172)
T cd02696 33 KLAKLLEAAGAKVVLTRDDDTFVSLSERVAIANRAGADLFISIHANAAPN 82 (172)
T ss_pred HHHHHHHHCCCEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEeecCCCC
Confidence 4456667779999876543 23689999999986 99999999887776
No 18
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=65.09 E-value=45 Score=33.61 Aligned_cols=71 Identities=14% Similarity=0.295 Sum_probs=53.9
Q ss_pred CCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEEE
Q 043548 206 RPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHG-AALTHSLFLRPGSVFV 284 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHG-AgLtn~lFl~pgs~vi 284 (385)
.-++++|.|....+| =+..+|.+.|-.|.+... .+.+ .-+..++|||+|..=| ++|-..=|.+||++||
T Consensus 214 GK~vvVIGRS~iVGk------Pla~LL~~~~ATVTicHs-~T~n---l~~~~~~ADIvIsAvGkp~~v~~d~vk~GavVI 283 (345)
T PLN02897 214 GKNAVVIGRSNIVGL------PMSLLLQRHDATVSTVHA-FTKD---PEQITRKADIVIAAAGIPNLVRGSWLKPGAVVI 283 (345)
T ss_pred CCEEEEECCCccccH------HHHHHHHHCCCEEEEEcC-CCCC---HHHHHhhCCEEEEccCCcCccCHHHcCCCCEEE
Confidence 458899999887554 345567778889888753 2444 4556899999887666 6788888999999999
Q ss_pred EE
Q 043548 285 QV 286 (385)
Q Consensus 285 Ei 286 (385)
-+
T Consensus 284 DV 285 (345)
T PLN02897 284 DV 285 (345)
T ss_pred Ec
Confidence 76
No 19
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=64.79 E-value=36 Score=33.38 Aligned_cols=71 Identities=17% Similarity=0.350 Sum_probs=53.1
Q ss_pred CCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEEE
Q 043548 206 RPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHG-AALTHSLFLRPGSVFV 284 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHG-AgLtn~lFl~pgs~vi 284 (385)
.-++++|.|+...+| =+..+|.+.|..|.+.... +-+ .-+...+|||+|..=| +++-..=|.+||++||
T Consensus 157 Gk~vvVvGrS~iVGk------Pla~lL~~~~atVtichs~-T~~---l~~~~~~ADIvI~AvG~~~~i~~~~vk~GavVI 226 (284)
T PRK14170 157 GKRAVVIGRSNIVGK------PVAQLLLNENATVTIAHSR-TKD---LPQVAKEADILVVATGLAKFVKKDYIKPGAIVI 226 (284)
T ss_pred CCEEEEECCCCcchH------HHHHHHHHCCCEEEEeCCC-CCC---HHHHHhhCCEEEEecCCcCccCHHHcCCCCEEE
Confidence 458899999887554 3455677778899887542 333 3456899999988777 6777778889999999
Q ss_pred EE
Q 043548 285 QV 286 (385)
Q Consensus 285 Ei 286 (385)
-+
T Consensus 227 Dv 228 (284)
T PRK14170 227 DV 228 (284)
T ss_pred Ec
Confidence 76
No 20
>PF01520 Amidase_3: N-acetylmuramoyl-L-alanine amidase; InterPro: IPR002508 The cell wall envelope of Gram-positive bacteria is a macromolecular, exoskeletal organelle that is assembled and turned over at designated sites. The cell wall also functions as a surface organelle that allows Gram-positive pathogens to interact with their environment, in particular the tissues of the infected host. All of these functions require that surface proteins and enzymes be properly targeted to the cell wall envelope. Two basic mechanisms, cell wall sorting and targeting, have been identified. Cell well sorting is the covalent attachment of surface proteins to the peptidoglycan via a C-terminal sorting signal that contains a consensus LPXTG sequence. More than 100 proteins that possess cell wall-sorting signals, including the M proteins of Streptococcus pyogenes, protein A of Staphylococcus aureus, and several internalins of Listeria monocytogenes, have been identified. Cell wall targeting involves the noncovalent attachment of proteins to the cell surface via specialised binding domains. Several of these wall-binding domains appear to interact with secondary wall polymers that are associated with the peptidoglycan, for example teichoic acids and polysaccharides. Proteins that are targeted to the cell surface include muralytic enzymes such as autolysins, lysostaphin, and phage lytic enzymes. Other examples for targeted proteins are the surface S-layer proteins of bacilli and clostridia, as well as virulence factors required for the pathogenesis of L. monocytogenes (internalin B) and Streptococcus pneumoniae (PspA) infections []. Autolysin 3.5.1.28 from EC hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain bacterial cell wall glycopeptides.; GO: 0008745 N-acetylmuramoyl-L-alanine amidase activity, 0009253 peptidoglycan catabolic process; PDB: 3QAY_A 3CZX_A 1JWQ_A 1XOV_A 3NE8_A.
Probab=64.33 E-value=17 Score=32.09 Aligned_cols=47 Identities=21% Similarity=0.266 Sum_probs=35.3
Q ss_pred HHHHHHHHCCCEEEEecCC-CCCCHHHHHHHH--hcCCEEEeechhhhhh
Q 043548 227 EVKRVAEDTGFEVTVFEPT-PKTSLRQAYALI--NSSHAMVGVHGAALTH 273 (385)
Q Consensus 227 ev~~~l~~~gf~v~~~~~~-~~~s~~eq~~l~--~~advlVGvHGAgLtn 273 (385)
.|.+.|++.|++|...... ...++.+.++.. ..+|++|+.|--+..+
T Consensus 32 ~l~~~L~~~g~~V~~tr~~d~~~~l~~R~~~an~~~ad~~isiH~na~~~ 81 (175)
T PF01520_consen 32 RLKKELEKHGIKVYLTRDNDSDVSLQERAALANSWGADLFISIHFNASNG 81 (175)
T ss_dssp HHHHHHHHTTEEEEESSSSSHCCCHHHHHHHHHHTTSSEEEEEEEE-SSS
T ss_pred HHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhcccCEEEEEeecCccC
Confidence 3445667789999887654 246899999999 8899999999766543
No 21
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=63.96 E-value=51 Score=30.56 Aligned_cols=76 Identities=12% Similarity=0.217 Sum_probs=52.7
Q ss_pred CCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecC-------------CCCC---CHHH-HHHHHhcCCEEEeec
Q 043548 205 TRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEP-------------TPKT---SLRQ-AYALINSSHAMVGVH 267 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~-------------~~~~---s~~e-q~~l~~~advlVGvH 267 (385)
..-++++|.|....+| -+..+|.+.|..|.+.+- .... +.+. -.+.+++|||+|..=
T Consensus 61 ~GK~vvVIGrS~iVGk------Pla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAv 134 (197)
T cd01079 61 YGKTITIINRSEVVGR------PLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGV 134 (197)
T ss_pred CCCEEEEECCCccchH------HHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEcc
Confidence 4458999999886554 455677778999988731 0111 2222 335789999998877
Q ss_pred hh-hh-hhhhccCCCcEEEEE
Q 043548 268 GA-AL-THSLFLRPGSVFVQV 286 (385)
Q Consensus 268 GA-gL-tn~lFl~pgs~viEi 286 (385)
|- ++ -..=|.+||++||-+
T Consensus 135 G~~~~~i~~d~ik~GavVIDV 155 (197)
T cd01079 135 PSPNYKVPTELLKDGAICINF 155 (197)
T ss_pred CCCCCccCHHHcCCCcEEEEc
Confidence 74 44 577789999999986
No 22
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=63.77 E-value=40 Score=33.03 Aligned_cols=72 Identities=15% Similarity=0.312 Sum_probs=56.9
Q ss_pred CCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEE
Q 043548 205 TRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHG-AALTHSLFLRPGSVF 283 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHG-AgLtn~lFl~pgs~v 283 (385)
..-++++|.|+.-.+|- +..+|...+..|.+... .+ ++-.+..++|||+|..=| ++|-..=|..||++|
T Consensus 155 ~Gk~~vVVGrS~iVGkP------la~lL~~~naTVtvcHs---~T-~~l~~~~k~ADIvv~AvG~p~~i~~d~vk~gavV 224 (283)
T COG0190 155 RGKNVVVVGRSNIVGKP------LALLLLNANATVTVCHS---RT-KDLASITKNADIVVVAVGKPHFIKADMVKPGAVV 224 (283)
T ss_pred CCCEEEEECCCCcCcHH------HHHHHHhCCCEEEEEcC---CC-CCHHHHhhhCCEEEEecCCccccccccccCCCEE
Confidence 45688999998876654 45667778999998853 22 566778899999998877 678888899999999
Q ss_pred EEE
Q 043548 284 VQV 286 (385)
Q Consensus 284 iEi 286 (385)
|-+
T Consensus 225 IDV 227 (283)
T COG0190 225 IDV 227 (283)
T ss_pred Eec
Confidence 986
No 23
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=63.26 E-value=56 Score=32.00 Aligned_cols=72 Identities=18% Similarity=0.338 Sum_probs=53.3
Q ss_pred CCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEE
Q 043548 205 TRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHG-AALTHSLFLRPGSVF 283 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHG-AgLtn~lFl~pgs~v 283 (385)
..-++++|.|+...+| -+..+|.+.|..|.+.... +.+++ +..++|||+|+.=| +++-..=|.+||++|
T Consensus 156 ~Gk~vvViGrS~iVGk------Pla~lL~~~~AtVtichs~-T~nl~---~~~~~ADIvI~AvGk~~~i~~~~ik~gaiV 225 (282)
T PRK14182 156 KGKRALVVGRSNIVGK------PMAMMLLERHATVTIAHSR-TADLA---GEVGRADILVAAIGKAELVKGAWVKEGAVV 225 (282)
T ss_pred CCCEEEEECCCCcchH------HHHHHHHHCCCEEEEeCCC-CCCHH---HHHhhCCEEEEecCCcCccCHHHcCCCCEE
Confidence 3458899999887554 4556777778888887542 44444 56789999988776 567777788999999
Q ss_pred EEE
Q 043548 284 VQV 286 (385)
Q Consensus 284 iEi 286 (385)
|-+
T Consensus 226 IDv 228 (282)
T PRK14182 226 IDV 228 (282)
T ss_pred EEe
Confidence 976
No 24
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=63.11 E-value=25 Score=34.43 Aligned_cols=72 Identities=15% Similarity=0.290 Sum_probs=53.5
Q ss_pred CCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeechhh-hhhhhccCCCcEEE
Q 043548 206 RPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHGAA-LTHSLFLRPGSVFV 284 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHGAg-Ltn~lFl~pgs~vi 284 (385)
.-++++|.|....+ .-+..+|.+.|..|.+.... + .+..+.+.+|||+|+.=|.. +-..=+.+||++||
T Consensus 158 Gk~vvVIGrs~~VG------~pla~lL~~~gatVtv~~s~-t---~~l~~~~~~ADIVIsAvg~p~~i~~~~vk~gavVI 227 (286)
T PRK14175 158 GKNAVVIGRSHIVG------QPVSKLLLQKNASVTILHSR-S---KDMASYLKDADVIVSAVGKPGLVTKDVVKEGAVII 227 (286)
T ss_pred CCEEEEECCCchhH------HHHHHHHHHCCCeEEEEeCC-c---hhHHHHHhhCCEEEECCCCCcccCHHHcCCCcEEE
Confidence 45889999977422 45667788889999888642 2 23446789999999988887 55555789999999
Q ss_pred EEe
Q 043548 285 QVV 287 (385)
Q Consensus 285 Ei~ 287 (385)
.+-
T Consensus 228 DvG 230 (286)
T PRK14175 228 DVG 230 (286)
T ss_pred EcC
Confidence 873
No 25
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=62.93 E-value=29 Score=33.96 Aligned_cols=95 Identities=13% Similarity=0.155 Sum_probs=58.0
Q ss_pred CeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCC------------CCHHHHHHHHhcCCEEEeechhhh-hh
Q 043548 207 PRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPK------------TSLRQAYALINSSHAMVGVHGAAL-TH 273 (385)
Q Consensus 207 prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~------------~s~~eq~~l~~~advlVGvHGAgL-tn 273 (385)
-++++|.-... -..++..|+..|.+|.+.+.... .++.+-.+.++++|++|..=++.+ +.
T Consensus 153 ~kvlViG~G~i-------G~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~~ 225 (296)
T PRK08306 153 SNVLVLGFGRT-------GMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALVLTK 225 (296)
T ss_pred CEEEEECCcHH-------HHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhhhhH
Confidence 46677765432 13456667777777776653210 123334466789999997655553 33
Q ss_pred hh--ccCCCcEEEEEeeCCccccccccHHHHHhhcCCcEEEE
Q 043548 274 SL--FLRPGSVFVQVVPLGLEWVAEVCFGTSAKAMGLDYMEY 313 (385)
Q Consensus 274 ~l--Fl~pgs~viEi~P~g~~~~~~~~y~~~A~~~gl~Y~~y 313 (385)
.+ .|+||+++|.+.-.. ....| ..|+..|++...+
T Consensus 226 ~~l~~~~~g~vIIDla~~p----ggtd~-~~a~~~Gv~~~~~ 262 (296)
T PRK08306 226 EVLSKMPPEALIIDLASKP----GGTDF-EYAEKRGIKALLA 262 (296)
T ss_pred HHHHcCCCCcEEEEEccCC----CCcCe-eehhhCCeEEEEE
Confidence 33 389999999986321 12345 5678888888754
No 26
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=62.61 E-value=59 Score=31.94 Aligned_cols=70 Identities=14% Similarity=0.316 Sum_probs=51.8
Q ss_pred CeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEEEE
Q 043548 207 PRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHG-AALTHSLFLRPGSVFVQ 285 (385)
Q Consensus 207 prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHG-AgLtn~lFl~pgs~viE 285 (385)
-++++|.|+...+| =+..+|.+.|..|.+... .+.++ .+...+|||+|..=| +++-..=|.+||++||-
T Consensus 160 K~vvViGrS~iVGk------Pla~lL~~~~ATVtichs-~T~~L---~~~~~~ADIvV~AvGkp~~i~~~~vk~GavVID 229 (288)
T PRK14171 160 KNVVIIGRSNIVGK------PLSALLLKENCSVTICHS-KTHNL---SSITSKADIVVAAIGSPLKLTAEYFNPESIVID 229 (288)
T ss_pred CEEEEECCCCcchH------HHHHHHHHCCCEEEEeCC-CCCCH---HHHHhhCCEEEEccCCCCccCHHHcCCCCEEEE
Confidence 47899999886554 455677778899988753 24444 446788999998777 56666778899999998
Q ss_pred E
Q 043548 286 V 286 (385)
Q Consensus 286 i 286 (385)
+
T Consensus 230 v 230 (288)
T PRK14171 230 V 230 (288)
T ss_pred e
Confidence 6
No 27
>TIGR02883 spore_cwlD N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect.
Probab=62.45 E-value=23 Score=32.16 Aligned_cols=47 Identities=21% Similarity=0.329 Sum_probs=34.1
Q ss_pred HHHHHHHHCCCEEEEecCCCC---------------CCHHHHHHHHh--cCCEEEeechhhhhh
Q 043548 227 EVKRVAEDTGFEVTVFEPTPK---------------TSLRQAYALIN--SSHAMVGVHGAALTH 273 (385)
Q Consensus 227 ev~~~l~~~gf~v~~~~~~~~---------------~s~~eq~~l~~--~advlVGvHGAgLtn 273 (385)
.|.+.|++.|++|+....... .++.|.+++.+ .+|++|+.|--+..+
T Consensus 34 ~l~~~L~~~G~~V~ltr~~d~~~~~~~~~~~~~~~~~~L~~R~~~An~~~adlfiSiH~Na~~~ 97 (189)
T TIGR02883 34 KLKDYLQEQGALVVMTREDDSDLASEGTKGYSRRKIEDLRKRVKLINESEADLFISIHLNAFPS 97 (189)
T ss_pred HHHHHHHhCCCEEEEEecCCcCccccccccccccccCCHHHHHHHHHhcCCCEEEEEecCCCCC
Confidence 445667778999876654321 26888888887 589999999877654
No 28
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=62.21 E-value=59 Score=28.05 Aligned_cols=93 Identities=12% Similarity=0.146 Sum_probs=55.6
Q ss_pred cccccHHHHHHHHHHCCCEEEEecCC-CCCCHHHH-------------HHHHhcCCEEEeechhhhhhhhccCCCcEEEE
Q 043548 220 RVILNQVEVKRVAEDTGFEVTVFEPT-PKTSLRQA-------------YALINSSHAMVGVHGAALTHSLFLRPGSVFVQ 285 (385)
Q Consensus 220 R~i~Ne~ev~~~l~~~gf~v~~~~~~-~~~s~~eq-------------~~l~~~advlVGvHGAgLtn~lFl~pgs~viE 285 (385)
||+-=..+.++.|.+.|++|.+=... +...|.++ -+++..||||+++..-...-.-.|++|.++|-
T Consensus 11 ~RVal~P~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~~~e~~~l~~g~~li~ 90 (136)
T PF05222_consen 11 RRVALTPEDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPSEEELALLKPGQTLIG 90 (136)
T ss_dssp --BSS-HHHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS---GGGGGGS-TTCEEEE
T ss_pred cEecccHHHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCCHHHHhhcCCCcEEEE
Confidence 45555577788888889999874322 12233221 15788999999999999999999999999997
Q ss_pred EeeCCccccccccHHHHHhhcCCcEEEEEec
Q 043548 286 VVPLGLEWVAEVCFGTSAKAMGLDYMEYKIN 316 (385)
Q Consensus 286 i~P~g~~~~~~~~y~~~A~~~gl~Y~~y~~~ 316 (385)
++... ........+ ...|+..+.|+.-
T Consensus 91 ~~~~~---~~~~~~~~l-~~~~it~~a~E~i 117 (136)
T PF05222_consen 91 FLHPA---QNKELLEAL-AKKGITAFALELI 117 (136)
T ss_dssp E--GG---GHHHHHHHH-HHCTEEEEEGGGS
T ss_pred eeccc---cCHHHHHHH-HHCCCEEEEhhhC
Confidence 76442 122223333 3477877776543
No 29
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=62.08 E-value=42 Score=32.85 Aligned_cols=71 Identities=13% Similarity=0.201 Sum_probs=53.0
Q ss_pred CCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEEE
Q 043548 206 RPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHG-AALTHSLFLRPGSVFV 284 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHG-AgLtn~lFl~pgs~vi 284 (385)
.-++++|.|+...+| =+..+|.+.|..|.+.... +.+ ..+...+|||+|..=| +++-..=|.+||++||
T Consensus 158 Gk~vvViGrS~~VGk------Pla~lL~~~~ATVt~chs~-T~d---l~~~~k~ADIvIsAvGkp~~i~~~~vk~gavVI 227 (282)
T PRK14180 158 GAYAVVVGASNVVGK------PVSQLLLNAKATVTTCHRF-TTD---LKSHTTKADILIVAVGKPNFITADMVKEGAVVI 227 (282)
T ss_pred CCEEEEECCCCcchH------HHHHHHHHCCCEEEEEcCC-CCC---HHHHhhhcCEEEEccCCcCcCCHHHcCCCcEEE
Confidence 458899999887554 3556677778999887532 333 3446899999988776 6777777889999999
Q ss_pred EE
Q 043548 285 QV 286 (385)
Q Consensus 285 Ei 286 (385)
-+
T Consensus 228 Dv 229 (282)
T PRK14180 228 DV 229 (282)
T ss_pred Ee
Confidence 86
No 30
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.91 E-value=60 Score=31.78 Aligned_cols=70 Identities=20% Similarity=0.342 Sum_probs=52.8
Q ss_pred CeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEEEE
Q 043548 207 PRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHG-AALTHSLFLRPGSVFVQ 285 (385)
Q Consensus 207 prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHG-AgLtn~lFl~pgs~viE 285 (385)
-++++|.|+...+| =+..+|.+.|..|.+... .+.++ .+..++|||+|..=| +++-..=|.+||++||-
T Consensus 157 k~vvViGrS~iVGk------Pla~lL~~~~atVtichs-~T~~l---~~~~~~ADIvI~AvG~p~~i~~~~vk~GavVID 226 (282)
T PRK14169 157 KRVVIVGRSNIVGR------PLAGLMVNHDATVTIAHS-KTRNL---KQLTKEADILVVAVGVPHFIGADAVKPGAVVID 226 (282)
T ss_pred CEEEEECCCccchH------HHHHHHHHCCCEEEEECC-CCCCH---HHHHhhCCEEEEccCCcCccCHHHcCCCcEEEE
Confidence 48899999886554 455677778999988753 24444 356789999887666 67878889999999998
Q ss_pred E
Q 043548 286 V 286 (385)
Q Consensus 286 i 286 (385)
+
T Consensus 227 v 227 (282)
T PRK14169 227 V 227 (282)
T ss_pred e
Confidence 6
No 31
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=61.72 E-value=19 Score=30.43 Aligned_cols=78 Identities=21% Similarity=0.263 Sum_probs=57.6
Q ss_pred HHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeechhhhhhhhccC-CCcEEEEEeeCCccccccccHHHHHh
Q 043548 226 VEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHGAALTHSLFLR-PGSVFVQVVPLGLEWVAEVCFGTSAK 304 (385)
Q Consensus 226 ~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHGAgLtn~lFl~-pgs~viEi~P~g~~~~~~~~y~~~A~ 304 (385)
++.++.|++ |++|.+.+ ..+-++-.+.+..+|++|+-++..++--++-. |+-.+|...--|++.. . -..|+
T Consensus 9 ~~~~~~l~~-~~~v~~~~---~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i---d-~~~a~ 80 (133)
T PF00389_consen 9 DEEIERLEE-GFEVEFCD---SPSEEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDNI---D-LEAAK 80 (133)
T ss_dssp HHHHHHHHH-TSEEEEES---SSSHHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTTB-----HHHHH
T ss_pred HHHHHHHHC-CceEEEeC---CCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCcc---c-HHHHh
Confidence 677788888 88888875 58888889999999999998777566555544 8888888877776322 1 45567
Q ss_pred hcCCcEE
Q 043548 305 AMGLDYM 311 (385)
Q Consensus 305 ~~gl~Y~ 311 (385)
..|+...
T Consensus 81 ~~gI~V~ 87 (133)
T PF00389_consen 81 ERGIPVT 87 (133)
T ss_dssp HTTSEEE
T ss_pred hCeEEEE
Confidence 7888655
No 32
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.43 E-value=45 Score=32.69 Aligned_cols=71 Identities=15% Similarity=0.331 Sum_probs=53.1
Q ss_pred CCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEEE
Q 043548 206 RPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHG-AALTHSLFLRPGSVFV 284 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHG-AgLtn~lFl~pgs~vi 284 (385)
.-++++|.|+...+| -+..+|.+.|..|.+.... +-++ -+...+|||+|+.=| +++-..=|.+||++||
T Consensus 159 Gk~vvViGrS~iVGk------Pla~lL~~~~atVt~chs~-T~~l---~~~~~~ADIvIsAvGk~~~i~~~~ik~gavVI 228 (284)
T PRK14177 159 GKNAVVVGRSPILGK------PMAMLLTEMNATVTLCHSK-TQNL---PSIVRQADIIVGAVGKPEFIKADWISEGAVLL 228 (284)
T ss_pred CCEEEEECCCCcchH------HHHHHHHHCCCEEEEeCCC-CCCH---HHHHhhCCEEEEeCCCcCccCHHHcCCCCEEE
Confidence 447899999886554 4556777789999988642 3333 356799999987766 5677777889999999
Q ss_pred EE
Q 043548 285 QV 286 (385)
Q Consensus 285 Ei 286 (385)
-+
T Consensus 229 Dv 230 (284)
T PRK14177 229 DA 230 (284)
T ss_pred Ee
Confidence 86
No 33
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=61.41 E-value=56 Score=33.15 Aligned_cols=71 Identities=13% Similarity=0.331 Sum_probs=53.3
Q ss_pred CCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEEE
Q 043548 206 RPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHG-AALTHSLFLRPGSVFV 284 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHG-AgLtn~lFl~pgs~vi 284 (385)
.-++++|.|....+| =+..+|.+.|-.|.+... .+-++. +...+|||+|..=| +++-..=|.+||++||
T Consensus 231 GK~vvVIGRS~iVGk------PLa~LL~~~~ATVTicHs-~T~nl~---~~~r~ADIVIsAvGkp~~i~~d~vK~GAvVI 300 (364)
T PLN02616 231 GKRAVVIGRSNIVGM------PAALLLQREDATVSIVHS-RTKNPE---EITREADIIISAVGQPNMVRGSWIKPGAVVI 300 (364)
T ss_pred CCEEEEECCCccccH------HHHHHHHHCCCeEEEeCC-CCCCHH---HHHhhCCEEEEcCCCcCcCCHHHcCCCCEEE
Confidence 448899999886554 455667778889988854 244444 45799999887766 6777888899999999
Q ss_pred EE
Q 043548 285 QV 286 (385)
Q Consensus 285 Ei 286 (385)
-+
T Consensus 301 DV 302 (364)
T PLN02616 301 DV 302 (364)
T ss_pred ec
Confidence 76
No 34
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.08 E-value=64 Score=31.57 Aligned_cols=71 Identities=10% Similarity=0.176 Sum_probs=52.8
Q ss_pred CCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEEE
Q 043548 206 RPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHG-AALTHSLFLRPGSVFV 284 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHG-AgLtn~lFl~pgs~vi 284 (385)
.-++++|.|+...+| -+..+|.+.|..|.+... .+.++ .+.+.+|||+|..-| ++|-..=|.+||++||
T Consensus 157 Gk~vvViGrS~~VG~------Pla~lL~~~~AtVti~hs-~T~~l---~~~~~~ADIvV~AvGkp~~i~~~~vk~gavvI 226 (281)
T PRK14183 157 GKDVCVVGASNIVGK------PMAALLLNANATVDICHI-FTKDL---KAHTKKADIVIVGVGKPNLITEDMVKEGAIVI 226 (281)
T ss_pred CCEEEEECCCCcchH------HHHHHHHHCCCEEEEeCC-CCcCH---HHHHhhCCEEEEecCcccccCHHHcCCCcEEE
Confidence 348899999876554 345667777888887643 23333 457899999888776 6777778889999999
Q ss_pred EE
Q 043548 285 QV 286 (385)
Q Consensus 285 Ei 286 (385)
.+
T Consensus 227 Dv 228 (281)
T PRK14183 227 DI 228 (281)
T ss_pred Ee
Confidence 86
No 35
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=60.49 E-value=49 Score=33.49 Aligned_cols=97 Identities=14% Similarity=0.074 Sum_probs=66.2
Q ss_pred CCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeec---hhhhhhhhccCCCc
Q 043548 205 TRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVH---GAALTHSLFLRPGS 281 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvH---GAgLtn~lFl~pgs 281 (385)
.+..|-+|.-.. ..-|..|+.+.|++.|+++..+-+ ...+++|-- -+.+|.+-|.+. |-.++..|-=+=|.
T Consensus 159 ~~~~VNiig~~~----~~~d~~el~~lL~~~Gi~~~~~~~-~~~~~~~i~-~~~~A~~niv~~~~~~~~~a~~L~~r~Gi 232 (406)
T cd01967 159 TPYDVNIIGEYN----IGGDAWVIKPLLEELGIRVNATFT-GDGTVDELR-RAHRAKLNLVHCSRSMNYLAREMEERYGI 232 (406)
T ss_pred CCCeEEEEeccc----cchhHHHHHHHHHHcCCEEEEEeC-CCCCHHHHh-hCccCCEEEEEChHHHHHHHHHHHHhhCC
Confidence 455677776422 223889999999999999986533 256666555 488888666553 44555555445566
Q ss_pred EEEEEeeCCccccccccHHHHHhhcCC
Q 043548 282 VFVQVVPLGLEWVAEVCFGTSAKAMGL 308 (385)
Q Consensus 282 ~viEi~P~g~~~~~~~~y~~~A~~~gl 308 (385)
-.+...|+|++- ...++..+++.+|.
T Consensus 233 P~~~~~p~G~~~-t~~~l~~l~~~lg~ 258 (406)
T cd01967 233 PYMEVNFYGFED-TSESLRKIAKFFGD 258 (406)
T ss_pred CEEEecCCcHHH-HHHHHHHHHHHhCC
Confidence 566677888642 45788999999997
No 36
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=60.10 E-value=66 Score=31.51 Aligned_cols=71 Identities=15% Similarity=0.242 Sum_probs=52.7
Q ss_pred CCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEEE
Q 043548 206 RPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHG-AALTHSLFLRPGSVFV 284 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHG-AgLtn~lFl~pgs~vi 284 (385)
.-++++|.|+...+| =+..+|.+.|..|.+.... +.+ .-+...+|||+|..=| +++-..=|.+||++||
T Consensus 157 Gk~vvVvGrS~iVGk------Pla~lL~~~~atVt~chs~-T~n---l~~~~~~ADIvIsAvGkp~~i~~~~vk~GavVI 226 (282)
T PRK14166 157 GKDAVIIGASNIVGR------PMATMLLNAGATVSVCHIK-TKD---LSLYTRQADLIIVAAGCVNLLRSDMVKEGVIVV 226 (282)
T ss_pred CCEEEEECCCCcchH------HHHHHHHHCCCEEEEeCCC-CCC---HHHHHhhCCEEEEcCCCcCccCHHHcCCCCEEE
Confidence 458899999887554 3556677779999887532 333 3347899999888766 6777777899999999
Q ss_pred EE
Q 043548 285 QV 286 (385)
Q Consensus 285 Ei 286 (385)
-+
T Consensus 227 Dv 228 (282)
T PRK14166 227 DV 228 (282)
T ss_pred Ee
Confidence 86
No 37
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=59.57 E-value=67 Score=31.70 Aligned_cols=71 Identities=18% Similarity=0.313 Sum_probs=52.0
Q ss_pred CCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEEE
Q 043548 206 RPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHG-AALTHSLFLRPGSVFV 284 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHG-AgLtn~lFl~pgs~vi 284 (385)
.-++++|.|+...+| =+..+|.+.|..|.+.... +.++ -+..++|||+|..=| +++-..=|.+||++||
T Consensus 158 Gk~vvVIGrS~iVGk------Pla~lL~~~~atVtv~hs~-T~~l---~~~~~~ADIvIsAvGkp~~i~~~~ik~gavVI 227 (297)
T PRK14186 158 GKKAVVVGRSILVGK------PLALMLLAANATVTIAHSR-TQDL---ASITREADILVAAAGRPNLIGAEMVKPGAVVV 227 (297)
T ss_pred CCEEEEECCCccchH------HHHHHHHHCCCEEEEeCCC-CCCH---HHHHhhCCEEEEccCCcCccCHHHcCCCCEEE
Confidence 357899999886554 4556777789999888542 4344 346789999998766 4566666889999999
Q ss_pred EE
Q 043548 285 QV 286 (385)
Q Consensus 285 Ei 286 (385)
-+
T Consensus 228 Dv 229 (297)
T PRK14186 228 DV 229 (297)
T ss_pred Ee
Confidence 76
No 38
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=58.79 E-value=67 Score=31.54 Aligned_cols=71 Identities=21% Similarity=0.319 Sum_probs=51.8
Q ss_pred CCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEEE
Q 043548 206 RPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHG-AALTHSLFLRPGSVFV 284 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHG-AgLtn~lFl~pgs~vi 284 (385)
.-++++|.|+...+| =+..+|.+.|..|.+... .+.++ ....++|||+|..=| +++-..=|.+||++||
T Consensus 155 Gk~vvViGrS~iVGk------Pla~lL~~~~aTVtichs-~T~~l---~~~~~~ADIvIsAvGkp~~i~~~~vk~GavVI 224 (287)
T PRK14173 155 GKEVVVVGRSNIVGK------PLAALLLREDATVTLAHS-KTQDL---PAVTRRADVLVVAVGRPHLITPEMVRPGAVVV 224 (287)
T ss_pred CCEEEEECCCCccHH------HHHHHHHHCCCEEEEeCC-CCCCH---HHHHhhCCEEEEecCCcCccCHHHcCCCCEEE
Confidence 458899999887554 345567777889988754 24333 456788999888776 5666666789999999
Q ss_pred EE
Q 043548 285 QV 286 (385)
Q Consensus 285 Ei 286 (385)
-+
T Consensus 225 DV 226 (287)
T PRK14173 225 DV 226 (287)
T ss_pred Ec
Confidence 76
No 39
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=58.36 E-value=52 Score=32.14 Aligned_cols=71 Identities=13% Similarity=0.299 Sum_probs=52.4
Q ss_pred CCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEEE
Q 043548 206 RPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHG-AALTHSLFLRPGSVFV 284 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHG-AgLtn~lFl~pgs~vi 284 (385)
.-++++|.|+...+| =+..+|.+.|..|.+.... +.+ .-+...+|||+|..=| +++-..=|.+||++||
T Consensus 158 Gk~vvViGrS~~VGk------Pla~lL~~~~AtVt~chs~-T~~---l~~~~~~ADIvIsAvGkp~~i~~~~ik~gavVI 227 (278)
T PRK14172 158 GKEVVVIGRSNIVGK------PVAQLLLNENATVTICHSK-TKN---LKEVCKKADILVVAIGRPKFIDEEYVKEGAIVI 227 (278)
T ss_pred CCEEEEECCCccchH------HHHHHHHHCCCEEEEeCCC-CCC---HHHHHhhCCEEEEcCCCcCccCHHHcCCCcEEE
Confidence 348899999886554 4556677789999888532 333 3446788999888766 5676777889999999
Q ss_pred EE
Q 043548 285 QV 286 (385)
Q Consensus 285 Ei 286 (385)
-+
T Consensus 228 Dv 229 (278)
T PRK14172 228 DV 229 (278)
T ss_pred Ee
Confidence 87
No 40
>PRK13337 putative lipid kinase; Reviewed
Probab=58.28 E-value=65 Score=31.35 Aligned_cols=70 Identities=14% Similarity=0.182 Sum_probs=45.3
Q ss_pred cccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHH--hcCCEEEeechhhhhh----hhccCCCcEEEEEeeCCc
Q 043548 222 ILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALI--NSSHAMVGVHGAALTH----SLFLRPGSVFVQVVPLGL 291 (385)
Q Consensus 222 i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~--~~advlVGvHGAgLtn----~lFl~pgs~viEi~P~g~ 291 (385)
-...+++.+.+++.|+++.+..........+.++.. +..|+||.+=|=|--| .+.-.+....+=++|.|.
T Consensus 18 ~~~~~~~~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~~vv~gl~~~~~~~~lgiiP~GT 93 (304)
T PRK13337 18 KKNLPDVLQKLEQAGYETSAHATTGPGDATLAAERAVERKFDLVIAAGGDGTLNEVVNGIAEKENRPKLGIIPVGT 93 (304)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHhhCCCCCcEEEECCcC
Confidence 344568888999999886554333345666666544 4578999998887654 343222234577889883
No 41
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=57.85 E-value=45 Score=32.59 Aligned_cols=83 Identities=12% Similarity=0.063 Sum_probs=54.0
Q ss_pred HHHHHHHHHHCCCEEEEecCC-CCC-----CHH-HHHHHHhcCCEEEee----------chh--------hhhhhhccCC
Q 043548 225 QVEVKRVAEDTGFEVTVFEPT-PKT-----SLR-QAYALINSSHAMVGV----------HGA--------ALTHSLFLRP 279 (385)
Q Consensus 225 e~ev~~~l~~~gf~v~~~~~~-~~~-----s~~-eq~~l~~~advlVGv----------HGA--------gLtn~lFl~p 279 (385)
+-++++.|.+.|++|.+..+. +.+ .+. ..-+.+.+||++|.+ ++. .-..+=-||+
T Consensus 14 ~~~~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~ 93 (296)
T PRK08306 14 QLELIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPE 93 (296)
T ss_pred HHHHHHHHHHCCCEEEEEeccccccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCC
Confidence 457889999999999875432 112 111 223568999999988 433 2244557899
Q ss_pred CcEEEEEeeCCccccccccHHHHHhhcCCcEEEEE
Q 043548 280 GSVFVQVVPLGLEWVAEVCFGTSAKAMGLDYMEYK 314 (385)
Q Consensus 280 gs~viEi~P~g~~~~~~~~y~~~A~~~gl~Y~~y~ 314 (385)
|..++ . |+ ..+.....+...|+..+.|.
T Consensus 94 ~~~v~--~--G~---~~~~~~~~~~~~gi~~~~~~ 121 (296)
T PRK08306 94 HCTIF--S--GI---ANPYLKELAKETNRKLVELF 121 (296)
T ss_pred CCEEE--E--ec---CCHHHHHHHHHCCCeEEEEe
Confidence 97554 2 32 23345577889999988764
No 42
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=56.72 E-value=89 Score=30.67 Aligned_cols=93 Identities=17% Similarity=0.230 Sum_probs=62.0
Q ss_pred EEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHh--cCCEEEeechhhhhh----hhccCCCcE
Q 043548 209 LMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALIN--SSHAMVGVHGAALTH----SLFLRPGSV 282 (385)
Q Consensus 209 v~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~--~advlVGvHGAgLtn----~lFl~pgs~ 282 (385)
.+++.+....+..-...+++.+.|++.|+++.+......-...+-++.+. .-|.+|+.=|=|.-| .++-.+.-.
T Consensus 6 ~~i~Np~sG~~~~~~~~~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGTv~evingl~~~~~~~ 85 (301)
T COG1597 6 LLIYNPTSGKGKAKKLLREVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLAGTDDPP 85 (301)
T ss_pred EEEEcccccccchhhHHHHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHhcCCCCc
Confidence 35556555434455556888999999999877655433334555555443 789999999988655 666665554
Q ss_pred EEEEeeCCccccccccHHHHHhhcCCc
Q 043548 283 FVQVVPLGLEWVAEVCFGTSAKAMGLD 309 (385)
Q Consensus 283 viEi~P~g~~~~~~~~y~~~A~~~gl~ 309 (385)
+=|+|.|. ....|+.+|+.
T Consensus 86 -LgilP~GT-------~NdfAr~Lgip 104 (301)
T COG1597 86 -LGILPGGT-------ANDFARALGIP 104 (301)
T ss_pred -eEEecCCc-------hHHHHHHcCCC
Confidence 88999983 23567777764
No 43
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=56.54 E-value=81 Score=31.15 Aligned_cols=71 Identities=15% Similarity=0.331 Sum_probs=51.9
Q ss_pred CCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEEE
Q 043548 206 RPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHG-AALTHSLFLRPGSVFV 284 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHG-AgLtn~lFl~pgs~vi 284 (385)
.-++++|.|+...+| =+..+|.+.|..|.+.... +-+++ +...+|||+|..=| +++-..=|.+||++||
T Consensus 167 Gk~vvVIGRS~iVGk------Pla~lL~~~~ATVtvchs~-T~nl~---~~~~~ADIvv~AvGk~~~i~~~~vk~gavVI 236 (299)
T PLN02516 167 GKKAVVVGRSNIVGL------PVSLLLLKADATVTVVHSR-TPDPE---SIVREADIVIAAAGQAMMIKGDWIKPGAAVI 236 (299)
T ss_pred CCEEEEECCCccchH------HHHHHHHHCCCEEEEeCCC-CCCHH---HHHhhCCEEEEcCCCcCccCHHHcCCCCEEE
Confidence 458899999887554 3455677779999988542 44443 46799999887766 4566666889999999
Q ss_pred EE
Q 043548 285 QV 286 (385)
Q Consensus 285 Ei 286 (385)
-+
T Consensus 237 Dv 238 (299)
T PLN02516 237 DV 238 (299)
T ss_pred Ee
Confidence 76
No 44
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=56.36 E-value=80 Score=31.12 Aligned_cols=71 Identities=13% Similarity=0.275 Sum_probs=52.9
Q ss_pred CCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEEE
Q 043548 206 RPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHG-AALTHSLFLRPGSVFV 284 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHG-AgLtn~lFl~pgs~vi 284 (385)
.-++++|.|+...+| =+..+|.+.|..|.+.... +-++ -+...+|||+|..=| +++-..=|.+||++||
T Consensus 160 Gk~vvViGrS~iVGk------Pla~lL~~~~aTVt~chs~-T~~l---~~~~~~ADIvVsAvGkp~~i~~~~ik~gaiVI 229 (294)
T PRK14187 160 GSDAVVIGRSNIVGK------PMACLLLGENCTVTTVHSA-TRDL---ADYCSKADILVAAVGIPNFVKYSWIKKGAIVI 229 (294)
T ss_pred CCEEEEECCCccchH------HHHHHHhhCCCEEEEeCCC-CCCH---HHHHhhCCEEEEccCCcCccCHHHcCCCCEEE
Confidence 347899999886554 4556677789999888542 3344 346899999988777 5666777889999999
Q ss_pred EE
Q 043548 285 QV 286 (385)
Q Consensus 285 Ei 286 (385)
-+
T Consensus 230 DV 231 (294)
T PRK14187 230 DV 231 (294)
T ss_pred Ee
Confidence 86
No 45
>PLN02928 oxidoreductase family protein
Probab=56.17 E-value=1.9e+02 Score=28.92 Aligned_cols=136 Identities=13% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCEEEEecCCCC---------------------CCHHHHHHHHhcCCEEEee--------chhhhhhhhc
Q 043548 226 VEVKRVAEDTGFEVTVFEPTPK---------------------TSLRQAYALINSSHAMVGV--------HGAALTHSLF 276 (385)
Q Consensus 226 ~ev~~~l~~~gf~v~~~~~~~~---------------------~s~~eq~~l~~~advlVGv--------HGAgLtn~lF 276 (385)
.++++.|+.+|++|+..++... .+..+--+++.+||+++-. |=-+-..+--
T Consensus 172 ~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~ 251 (347)
T PLN02928 172 IELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSS 251 (347)
T ss_pred HHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhc
Q ss_pred cCCCcEEEEEeeCCccccccccHHHHHhhcCCcEEEEEecccccchhhhcCCCCccccCCccc---cCCCcchhhhhhhh
Q 043548 277 LRPGSVFVQVVPLGLEWVAEVCFGTSAKAMGLDYMEYKINAEESSLIEKYNKNDTVIKDPVAF---RGKSWSDAAMNIYL 353 (385)
Q Consensus 277 l~pgs~viEi~P~g~~~~~~~~y~~~A~~~gl~Y~~y~~~~~essl~~~y~~d~~v~~dP~~~---~~~gw~~~~~~~yl 353 (385)
|+||+.+|-+---++ .....--..-+.=.+......+-..|- .+.+||....|..+ |-.|+
T Consensus 252 Mk~ga~lINvaRG~l--Vde~AL~~AL~~g~i~gAaLDV~~~EP-----~~~~~pL~~~~nviiTPHia~~--------- 315 (347)
T PLN02928 252 MKKGALLVNIARGGL--LDYDAVLAALESGHLGGLAIDVAWSEP-----FDPDDPILKHPNVIITPHVAGV--------- 315 (347)
T ss_pred CCCCeEEEECCCccc--cCHHHHHHHHHcCCeeEEEEccCCCCC-----CCCCChhhcCCCEEECCcCCCC---------
Q ss_pred cCCceEEchHhHHHHHHHHHHHHHhhhhcCC
Q 043548 354 KEQNVKLDLFRFREYLKKVYKKAKRFMDKGE 384 (385)
Q Consensus 354 ~~Qdv~ldi~rF~~~L~~a~~~~~~~~~~~~ 384 (385)
-.+.++.....+.+.+++|+..+.
T Consensus 316 -------t~~~~~~~~~~~~~nl~~~~~g~~ 339 (347)
T PLN02928 316 -------TEYSYRSMGKIVGDAALQLHAGRP 339 (347)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHCCCC
No 46
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.56 E-value=86 Score=30.79 Aligned_cols=71 Identities=13% Similarity=0.279 Sum_probs=51.1
Q ss_pred CCeEEEEEccCCCCcccccHHHHHHHHHHC----CCEEEEecCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCC
Q 043548 206 RPRLMLMSRRGGLGRVILNQVEVKRVAEDT----GFEVTVFEPTPKTSLRQAYALINSSHAMVGVHG-AALTHSLFLRPG 280 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~Ne~ev~~~l~~~----gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHG-AgLtn~lFl~pg 280 (385)
.-++++|.|+...+|- +..+|.+. +..|.+... .+.++ -+..++|||+|..=| +++-..=|.+||
T Consensus 153 Gk~vvViGrS~iVGkP------la~lL~~~~~~~~AtVtvchs-~T~~l---~~~~~~ADIvV~AvG~p~~i~~~~ik~G 222 (287)
T PRK14181 153 GRHVAIVGRSNIVGKP------LAALLMQKHPDTNATVTLLHS-QSENL---TEILKTADIIIAAIGVPLFIKEEMIAEK 222 (287)
T ss_pred CCEEEEECCCccchHH------HHHHHHhCcCCCCCEEEEeCC-CCCCH---HHHHhhCCEEEEccCCcCccCHHHcCCC
Confidence 4588999998875543 44556665 778888753 23333 345799999987766 567777789999
Q ss_pred cEEEEE
Q 043548 281 SVFVQV 286 (385)
Q Consensus 281 s~viEi 286 (385)
++||-+
T Consensus 223 avVIDv 228 (287)
T PRK14181 223 AVIVDV 228 (287)
T ss_pred CEEEEe
Confidence 999986
No 47
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=55.45 E-value=20 Score=36.11 Aligned_cols=97 Identities=19% Similarity=0.209 Sum_probs=69.5
Q ss_pred CCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeechhhhh-hhhccCC--Cc
Q 043548 205 TRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHGAALT-HSLFLRP--GS 281 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHGAgLt-n~lFl~p--gs 281 (385)
.++.+-+|....-. .-|..|+.+.|++.|++|...-+. ..++ |.++-+.+|++-|.++..+.. =.=+|.. |.
T Consensus 143 ~~~~VNiiG~~~~~---~~d~~el~~lL~~~Gi~v~~~~~~-~~t~-~e~~~~~~A~lniv~~~~~~~~~a~~L~e~~gi 217 (398)
T PF00148_consen 143 KPRSVNIIGGSPLG---PGDLEELKRLLEELGIEVNAVFPG-GTTL-EEIRKAPEAALNIVLCPEGGPYAAEWLEERFGI 217 (398)
T ss_dssp SSSEEEEEEESTBT---HHHHHHHHHHHHHTTEEEEEEEET-TBCH-HHHHHGGGSSEEEESSCCHHHHHHHHHHHHHT-
T ss_pred CCCceEEecCcCCC---cccHHHHHHHHHHCCCceEEEeCC-CCCH-HHHHhCCcCcEEEEeccchhhHHHHHHHHHhCC
Confidence 45578888765431 268899999999999998766432 4555 456678899999998888665 4455544 77
Q ss_pred EEEE-EeeCCccccccccHHHHHhhcC
Q 043548 282 VFVQ-VVPLGLEWVAEVCFGTSAKAMG 307 (385)
Q Consensus 282 ~viE-i~P~g~~~~~~~~y~~~A~~~g 307 (385)
-.+. -.|+|++. ...+|..+|+.+|
T Consensus 218 P~~~~~~p~G~~~-t~~~l~~i~~~lg 243 (398)
T PF00148_consen 218 PYLYFPSPYGIEG-TDAWLRAIAEALG 243 (398)
T ss_dssp EEEEEC-SBSHHH-HHHHHHHHHHHHT
T ss_pred CeeeccccccHHH-HHHHHHHHHHHhC
Confidence 7777 67888654 4679999999999
No 48
>PRK10319 N-acetylmuramoyl-l-alanine amidase I; Provisional
Probab=55.34 E-value=26 Score=34.28 Aligned_cols=56 Identities=13% Similarity=0.286 Sum_probs=39.3
Q ss_pred HHHHHHCCCEEEEecCC-CCCCHHHHHHHHh--cCCEEEeechhhhhhhhccCCCcEEEEEeeC
Q 043548 229 KRVAEDTGFEVTVFEPT-PKTSLRQAYALIN--SSHAMVGVHGAALTHSLFLRPGSVFVQVVPL 289 (385)
Q Consensus 229 ~~~l~~~gf~v~~~~~~-~~~s~~eq~~l~~--~advlVGvHGAgLtn~lFl~pgs~viEi~P~ 289 (385)
.+.|++.|++|+..... ...++.+-+++.+ .||++|++|--+.++ |.+.=+|++-+
T Consensus 92 ~~~L~~~G~~V~lTR~~D~~vsL~~R~~~An~~~ADlFISIH~Ns~~~-----~~a~G~evy~~ 150 (287)
T PRK10319 92 RSILRNHGIDARLTRSGDTFIPLYDRVEIAHKHGADLFMSIHADGFTN-----PKAAGASVFAL 150 (287)
T ss_pred HHHHHHCCCEEEEeCCCCCCCCHHHHHHHHHhcCCCEEEEecCCCCCC-----CCCcEEEEEEe
Confidence 45566679999877654 3478999998887 899999999755432 34444566533
No 49
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=55.19 E-value=56 Score=33.52 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=70.5
Q ss_pred CCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeec---hhhhhhhhccCCCc
Q 043548 205 TRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVH---GAALTHSLFLRPGS 281 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvH---GAgLtn~lFl~pgs 281 (385)
.++++-+|.-..-....--|..|+.+.|++.|.+|..+-+. ..+++ +++-+.+|++-|.++ |..++..|--+=|.
T Consensus 161 ~~~~VNiiG~~~~~~~~~~d~~ei~~lL~~~Gl~v~~~~~~-~~~~~-~i~~~~~A~lniv~~~~~~~~~a~~L~~~~Gi 238 (430)
T cd01981 161 EKPSVNLIGPSSLGFHNRHDCRELKRLLHTLGIEVNVVIPE-GASVD-DLNELPKAWFNIVPYREYGLSAALYLEEEFGM 238 (430)
T ss_pred CCCcEEEEcCCCCCCCCcchHHHHHHHHHHcCCeEEEEEcC-CCCHH-HHHhhhhCeEEEEecHHHHHHHHHHHHHHhCC
Confidence 34567777654322244568899999999999999765332 34554 555577777766654 55566667666676
Q ss_pred EEEEEeeCCccccccccHHHHHhhcCCcE
Q 043548 282 VFVQVVPLGLEWVAEVCFGTSAKAMGLDY 310 (385)
Q Consensus 282 ~viEi~P~g~~~~~~~~y~~~A~~~gl~Y 310 (385)
-.+...|.|++- ...+...+++.+|+..
T Consensus 239 P~~~~~p~G~~~-t~~~l~~i~~~~g~~~ 266 (430)
T cd01981 239 PSVKITPIGVVA-TARFLREIQELLGIQI 266 (430)
T ss_pred CeEeccCCChHH-HHHHHHHHHHHhCCcc
Confidence 667779999642 4568899999999763
No 50
>PRK13059 putative lipid kinase; Reviewed
Probab=55.08 E-value=77 Score=30.76 Aligned_cols=68 Identities=15% Similarity=0.240 Sum_probs=42.4
Q ss_pred ccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHH-HH-hcCCEEEeechhhhhhhh---ccCCC-cEEEEEeeCCc
Q 043548 223 LNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYA-LI-NSSHAMVGVHGAALTHSL---FLRPG-SVFVQVVPLGL 291 (385)
Q Consensus 223 ~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~-l~-~~advlVGvHGAgLtn~l---Fl~pg-s~viEi~P~g~ 291 (385)
...+++.+.+++.|+++.+......... ++++ .. ..+|+||.+=|=|-.|.+ .+..+ ..-+=|+|.|.
T Consensus 19 ~~~~~i~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~d~vi~~GGDGTv~evv~gl~~~~~~~~lgviP~GT 92 (295)
T PRK13059 19 SELDKVIRIHQEKGYLVVPYRISLEYDL-KNAFKDIDESYKYILIAGGDGTVDNVVNAMKKLNIDLPIGILPVGT 92 (295)
T ss_pred HHHHHHHHHHHHCCcEEEEEEccCcchH-HHHHHHhhcCCCEEEEECCccHHHHHHHHHHhcCCCCcEEEECCCC
Confidence 3456788899999999776544322232 3332 22 456999999998865543 13222 24477899883
No 51
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.31 E-value=85 Score=30.94 Aligned_cols=71 Identities=14% Similarity=0.311 Sum_probs=48.1
Q ss_pred CCeEEEEEccCCCCcccccHHHHHHHHHH----CCCEEEEecCCCCCCHHHHHHHHhcCCEEEeechhh-hhhhhccCCC
Q 043548 206 RPRLMLMSRRGGLGRVILNQVEVKRVAED----TGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHGAA-LTHSLFLRPG 280 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~Ne~ev~~~l~~----~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHGAg-Ltn~lFl~pg 280 (385)
.-++++|.|+...+|-+. .+|.+ .|..|.+.... +.. ..+.+.+|||+|+.=|.. +-..=|.+||
T Consensus 159 Gk~vvViGrS~iVG~Pla------~lL~~~~~~~~atVt~~hs~-t~~---l~~~~~~ADIvI~Avg~~~li~~~~vk~G 228 (295)
T PRK14174 159 GKHCVVVGRSNIVGKPMA------NLMLQKLKESNCTVTICHSA-TKD---IPSYTRQADILIAAIGKARFITADMVKPG 228 (295)
T ss_pred CCEEEEECCCCcchHHHH------HHHHhccccCCCEEEEEeCC-chh---HHHHHHhCCEEEEecCccCccCHHHcCCC
Confidence 458899999887665433 33333 57888877532 323 455679999999988754 3333356999
Q ss_pred cEEEEE
Q 043548 281 SVFVQV 286 (385)
Q Consensus 281 s~viEi 286 (385)
++||-+
T Consensus 229 avVIDV 234 (295)
T PRK14174 229 AVVIDV 234 (295)
T ss_pred CEEEEe
Confidence 999986
No 52
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=53.13 E-value=25 Score=33.41 Aligned_cols=50 Identities=12% Similarity=0.163 Sum_probs=42.5
Q ss_pred eEEEEEccCC----CCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcC
Q 043548 208 RLMLMSRRGG----LGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSS 260 (385)
Q Consensus 208 rv~~isR~~~----~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~a 260 (385)
-+.|++|++- ....|.|.+.+.+..+++|++|+.++ ..+++|-++.+.++
T Consensus 173 LiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evd---G~d~~~i~~a~~~~ 226 (243)
T COG3959 173 LIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVD---GHDIEEIVEALEKA 226 (243)
T ss_pred EEEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEc---CcCHHHHHHHHHhh
Confidence 5688999873 35889999999999999999999886 57899998888766
No 53
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=52.14 E-value=22 Score=36.50 Aligned_cols=95 Identities=23% Similarity=0.295 Sum_probs=65.8
Q ss_pred CCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHH-hcCCEEEeechhhhhhhhccCCCcEEE
Q 043548 206 RPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALI-NSSHAMVGVHGAALTHSLFLRPGSVFV 284 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~-~~advlVGvHGAgLtn~lFl~pgs~vi 284 (385)
++++.++..-. -.+.+|+.+.|++.|.+++.+-+ ..+++|..++= +.+.+.++..+...+..|= ..|.-.+
T Consensus 159 ~~~vniiG~~~-----~~d~~ei~~lL~~~Gl~~~~~l~--~~~~~el~~~~~A~~~i~~~~~~~~~a~~Le-~~GvP~~ 230 (416)
T cd01980 159 EPSLALLGEMF-----PADPVAIGSVLERMGLAAVPVVP--TREWRELYAAGDAAAVAALHPFYTATIRELE-EAGRPIV 230 (416)
T ss_pred CCeEEEEccCC-----CCCHHHHHHHHHHcCCceeeEeC--CCCHHHHhhcccCcEEEEeChhHHHHHHHHH-HcCCcee
Confidence 45777875322 23568999999999999986434 35666655554 4445566666666666664 4487677
Q ss_pred EEeeCCccccccccHHHHHhhcCCc
Q 043548 285 QVVPLGLEWVAEVCFGTSAKAMGLD 309 (385)
Q Consensus 285 Ei~P~g~~~~~~~~y~~~A~~~gl~ 309 (385)
...|.|++ ....++..+|...|..
T Consensus 231 ~~~piG~~-~td~~l~~la~~~g~~ 254 (416)
T cd01980 231 SGAPVGAD-GTAAWLEAVGEALGLD 254 (416)
T ss_pred cCCCcCch-HHHHHHHHHHHHhCcC
Confidence 77899975 3567899999999964
No 54
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.54 E-value=1.1e+02 Score=30.32 Aligned_cols=72 Identities=14% Similarity=0.345 Sum_probs=51.4
Q ss_pred CCCeEEEEEccCCCCcccccHHHHHHHHHHC----CCEEEEecCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCC
Q 043548 205 TRPRLMLMSRRGGLGRVILNQVEVKRVAEDT----GFEVTVFEPTPKTSLRQAYALINSSHAMVGVHG-AALTHSLFLRP 279 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~----gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHG-AgLtn~lFl~p 279 (385)
..-++++|.|+...+|- +..+|.+. +..|.+... .+.+++ +..++|||+|..=| +++-..=|.+|
T Consensus 160 ~Gk~vvViGrS~iVGkP------la~lL~~~~~~~~atVtv~hs-~T~~l~---~~~~~ADIvVsAvGkp~~i~~~~ik~ 229 (297)
T PRK14168 160 SGAEVVVVGRSNIVGKP------IANMMTQKGPGANATVTIVHT-RSKNLA---RHCQRADILIVAAGVPNLVKPEWIKP 229 (297)
T ss_pred CCCEEEEECCCCcccHH------HHHHHHhcccCCCCEEEEecC-CCcCHH---HHHhhCCEEEEecCCcCccCHHHcCC
Confidence 34588999998875543 44455555 677877743 233343 46799999997555 67888888999
Q ss_pred CcEEEEE
Q 043548 280 GSVFVQV 286 (385)
Q Consensus 280 gs~viEi 286 (385)
|++||-+
T Consensus 230 gavVIDv 236 (297)
T PRK14168 230 GATVIDV 236 (297)
T ss_pred CCEEEec
Confidence 9999986
No 55
>PF13271 DUF4062: Domain of unknown function (DUF4062)
Probab=51.30 E-value=40 Score=26.29 Aligned_cols=46 Identities=11% Similarity=0.141 Sum_probs=32.3
Q ss_pred HHHHHHHHCCCEEEEecC---CCCCCHHHHHHHHhcCCEEEeechhhhh
Q 043548 227 EVKRVAEDTGFEVTVFEP---TPKTSLRQAYALINSSHAMVGVHGAALT 272 (385)
Q Consensus 227 ev~~~l~~~gf~v~~~~~---~~~~s~~eq~~l~~~advlVGvHGAgLt 272 (385)
.+.+.+.+.|++.+..+. ....+.+--++.+.+||++||.=|.--.
T Consensus 17 ~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG 65 (83)
T PF13271_consen 17 ALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNRYG 65 (83)
T ss_pred HHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccccC
Confidence 455667777776554432 2456677788999999999998876443
No 56
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=51.08 E-value=34 Score=35.16 Aligned_cols=102 Identities=21% Similarity=0.266 Sum_probs=67.0
Q ss_pred CCCeEEEEEccCCCCcc-cccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeech-hh--hhhhhccCCC
Q 043548 205 TRPRLMLMSRRGGLGRV-ILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHG-AA--LTHSLFLRPG 280 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~-i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHG-Ag--Ltn~lFl~pg 280 (385)
.++.+-+|.-.....+. --|..|+.+.|++.|++|+.+-+ ...+++| ++-+.+|.+-|.++. +| ++..|-=+=|
T Consensus 160 ~~~~VNliG~~~~~~~~~~~d~~ei~~lL~~~Gi~v~~~~~-~~~~~~e-i~~~~~A~lniv~~~~~g~~~a~~Lee~~G 237 (426)
T cd01972 160 QEDSVNIIGLWGGPERTEQEDVDEFKRLLNELGLRVNAIIA-GGCSVEE-LERASEAAANVTLCLDLGYYLGAALEQRFG 237 (426)
T ss_pred CCCCEEEEccCCCccccccccHHHHHHHHHHcCCeEEEEeC-CCCCHHH-HHhcccCCEEEEEChhHHHHHHHHHHHHhC
Confidence 34566677644321111 36789999999999999987643 2455555 555888888777763 44 4444444556
Q ss_pred cEEEEE-eeCCccccccccHHHHHhhcCCc
Q 043548 281 SVFVQV-VPLGLEWVAEVCFGTSAKAMGLD 309 (385)
Q Consensus 281 s~viEi-~P~g~~~~~~~~y~~~A~~~gl~ 309 (385)
.-.+++ +|+|++ ....++..+|+.+|+.
T Consensus 238 iP~~~~~~P~G~~-~T~~~l~~ia~~~g~~ 266 (426)
T cd01972 238 VPEIKAPQPYGIE-ATDKWLREIAKVLGME 266 (426)
T ss_pred CCeEecCCccCHH-HHHHHHHHHHHHhCCc
Confidence 667766 688863 2346889999988873
No 57
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.00 E-value=1.1e+02 Score=30.04 Aligned_cols=72 Identities=19% Similarity=0.325 Sum_probs=51.1
Q ss_pred CCCeEEEEEccCCCCcccccHHHHHHHHHH--CCCEEEEecCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCc
Q 043548 205 TRPRLMLMSRRGGLGRVILNQVEVKRVAED--TGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHG-AALTHSLFLRPGS 281 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne~ev~~~l~~--~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHG-AgLtn~lFl~pgs 281 (385)
..-++++|.|+...+|- +..+|.+ .|..|.+... .+.++. ...++|||+|..=| +++-..=|.+||+
T Consensus 157 ~Gk~vvViGrS~~VGkP------la~lL~~~~~~atVtvchs-~T~~l~---~~~k~ADIvV~AvGkp~~i~~~~ik~Ga 226 (284)
T PRK14193 157 AGAHVVVIGRGVTVGRP------IGLLLTRRSENATVTLCHT-GTRDLA---AHTRRADIIVAAAGVAHLVTADMVKPGA 226 (284)
T ss_pred CCCEEEEECCCCcchHH------HHHHHhhccCCCEEEEeCC-CCCCHH---HHHHhCCEEEEecCCcCccCHHHcCCCC
Confidence 34588999998875543 4445555 5888888753 243433 56788999998777 4566667889999
Q ss_pred EEEEE
Q 043548 282 VFVQV 286 (385)
Q Consensus 282 ~viEi 286 (385)
+||-+
T Consensus 227 vVIDv 231 (284)
T PRK14193 227 AVLDV 231 (284)
T ss_pred EEEEc
Confidence 99976
No 58
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=50.58 E-value=58 Score=34.53 Aligned_cols=102 Identities=20% Similarity=0.259 Sum_probs=70.9
Q ss_pred CCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccC--CCc
Q 043548 205 TRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHG-AALTHSLFLR--PGS 281 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHG-AgLtn~lFl~--pgs 281 (385)
.++++-||.=..-..+.--|..|+.+.|++.|.+|..+-+. ..+ -++++-+.+|++-|.+++ .|..=.-+|. =|.
T Consensus 157 ~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~v~p~-g~s-~~di~~l~~A~~nivl~~~~g~~~A~~Lee~fGi 234 (519)
T PRK02910 157 ARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNVVAPL-GAS-PADLKRLPAAWFNVVLYREIGESAARYLEREFGQ 234 (519)
T ss_pred CCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEEEeCC-CCC-HHHHHhcccCcEEEEeCHHHHHHHHHHHHHHhCC
Confidence 56778787643321244567889999999999999876442 344 566777899999888877 5655555654 234
Q ss_pred EEEEEeeCCccccccccHHHHHhhcCCc
Q 043548 282 VFVQVVPLGLEWVAEVCFGTSAKAMGLD 309 (385)
Q Consensus 282 ~viEi~P~g~~~~~~~~y~~~A~~~gl~ 309 (385)
-.+...|.|++ ....+-..+|+.+|+.
T Consensus 235 P~i~~~PiG~~-~T~~fL~~la~~~g~~ 261 (519)
T PRK02910 235 PYVKTVPIGVG-ATARFIREVAELLNLD 261 (519)
T ss_pred cccccccccHH-HHHHHHHHHHHHhCCC
Confidence 45667899964 2346778999999874
No 59
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.30 E-value=94 Score=30.51 Aligned_cols=71 Identities=15% Similarity=0.237 Sum_probs=49.1
Q ss_pred CCeEEEEEccCCCCcccccHHHHHHHHHH----CCCEEEEecCCCCCCHHHHHHHHhcCCEEEeechhh-hhhhhccCCC
Q 043548 206 RPRLMLMSRRGGLGRVILNQVEVKRVAED----TGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHGAA-LTHSLFLRPG 280 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~Ne~ev~~~l~~----~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHGAg-Ltn~lFl~pg 280 (385)
.-++++|.|+...+| =+..+|.+ .|..|.+.... + ..-.+.+.+|||+|+.=|.. +--.=|.+||
T Consensus 157 Gk~vvViGrS~iVG~------Pla~lL~~~~~~~~AtVt~~hs~-t---~~l~~~~~~ADIVI~AvG~p~li~~~~vk~G 226 (286)
T PRK14184 157 GKKAVVVGRSNIVGK------PLALMLGAPGKFANATVTVCHSR-T---PDLAEECREADFLFVAIGRPRFVTADMVKPG 226 (286)
T ss_pred CCEEEEECCCccchH------HHHHHHhCCcccCCCEEEEEeCC-c---hhHHHHHHhCCEEEEecCCCCcCCHHHcCCC
Confidence 358899999886554 34556666 57788877532 2 23445789999999987753 3333466999
Q ss_pred cEEEEE
Q 043548 281 SVFVQV 286 (385)
Q Consensus 281 s~viEi 286 (385)
++||-+
T Consensus 227 avVIDV 232 (286)
T PRK14184 227 AVVVDV 232 (286)
T ss_pred CEEEEe
Confidence 999986
No 60
>PRK13055 putative lipid kinase; Reviewed
Probab=50.01 E-value=98 Score=30.66 Aligned_cols=93 Identities=14% Similarity=0.245 Sum_probs=53.3
Q ss_pred EEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCC-CCCCHHHHHHHH--hcCCEEEeechhhhhh----hhccCCCcE
Q 043548 210 MLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPT-PKTSLRQAYALI--NSSHAMVGVHGAALTH----SLFLRPGSV 282 (385)
Q Consensus 210 ~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~-~~~s~~eq~~l~--~~advlVGvHGAgLtn----~lFl~pgs~ 282 (385)
+|+......++.-...+++.+.+++.|+++.+.... ......+.++.. ...|+||.+=|=|-.| .+.-.....
T Consensus 7 iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~GGDGTl~evvngl~~~~~~~ 86 (334)
T PRK13055 7 LIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAGGDGTINEVVNGIAPLEKRP 86 (334)
T ss_pred EEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEECCCCHHHHHHHHHhhcCCCC
Confidence 344444332333344578889999999886654321 123444444433 4579999999988554 443212234
Q ss_pred EEEEeeCCccccccccHHHHHhhcCCc
Q 043548 283 FVQVVPLGLEWVAEVCFGTSAKAMGLD 309 (385)
Q Consensus 283 viEi~P~g~~~~~~~~y~~~A~~~gl~ 309 (385)
.+=|+|.|. -..+|+.+|+.
T Consensus 87 ~LgiiP~GT-------gNdfAr~Lgi~ 106 (334)
T PRK13055 87 KMAIIPAGT-------TNDYARALKIP 106 (334)
T ss_pred cEEEECCCc-------hhHHHHHcCCC
Confidence 578899983 12445555553
No 61
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=48.70 E-value=48 Score=29.50 Aligned_cols=75 Identities=7% Similarity=-0.011 Sum_probs=47.1
Q ss_pred CCCeEEEEEccCCC-CcccccHHHHHHHHHHCCCEEEEec--CCCCCCHHHHHHHH---hcCCEEEeechhhhhhhhccC
Q 043548 205 TRPRLMLMSRRGGL-GRVILNQVEVKRVAEDTGFEVTVFE--PTPKTSLRQAYALI---NSSHAMVGVHGAALTHSLFLR 278 (385)
Q Consensus 205 ~~prv~~isR~~~~-~R~i~Ne~ev~~~l~~~gf~v~~~~--~~~~~s~~eq~~l~---~~advlVGvHGAgLtn~lFl~ 278 (385)
.++|+.+|.=.... ...=.|-.-+.+.+++.|+++.... +++.-.+.+.++-. +.+|++|-.=|+|.+--=+.|
T Consensus 3 ~~~rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~~D~t~ 82 (163)
T TIGR02667 3 IPLRIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTGFTGRDVTP 82 (163)
T ss_pred CccEEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCCcH
Confidence 35666555322211 1223356677888999999876432 44445567777654 469999999998877655554
Q ss_pred C
Q 043548 279 P 279 (385)
Q Consensus 279 p 279 (385)
+
T Consensus 83 e 83 (163)
T TIGR02667 83 E 83 (163)
T ss_pred H
Confidence 4
No 62
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.59 E-value=45 Score=32.69 Aligned_cols=72 Identities=14% Similarity=0.207 Sum_probs=52.6
Q ss_pred CCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEEE
Q 043548 206 RPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHG-AALTHSLFLRPGSVFV 284 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHG-AgLtn~lFl~pgs~vi 284 (385)
.-++++|.|....+ .-+..+|.+.|..|.+.... + .+.-+.+.+|||+|..=| +++-..=|.+||++||
T Consensus 159 Gk~vvViGrs~iVG------~Pla~lL~~~~atVtv~hs~-T---~~l~~~~~~ADIvi~avG~p~~v~~~~vk~gavVI 228 (285)
T PRK10792 159 GLNAVVVGASNIVG------RPMSLELLLAGCTVTVCHRF-T---KNLRHHVRNADLLVVAVGKPGFIPGEWIKPGAIVI 228 (285)
T ss_pred CCEEEEECCCcccH------HHHHHHHHHCCCeEEEEECC-C---CCHHHHHhhCCEEEEcCCCcccccHHHcCCCcEEE
Confidence 45889999887543 34566777889999887532 2 233456899999998876 5666667789999999
Q ss_pred EEe
Q 043548 285 QVV 287 (385)
Q Consensus 285 Ei~ 287 (385)
.+=
T Consensus 229 DvG 231 (285)
T PRK10792 229 DVG 231 (285)
T ss_pred Ecc
Confidence 873
No 63
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.42 E-value=1.1e+02 Score=30.17 Aligned_cols=71 Identities=18% Similarity=0.280 Sum_probs=51.0
Q ss_pred CCeEEEEEccCCCCcccccHHHHHHHHHHC----CCEEEEecCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCC
Q 043548 206 RPRLMLMSRRGGLGRVILNQVEVKRVAEDT----GFEVTVFEPTPKTSLRQAYALINSSHAMVGVHG-AALTHSLFLRPG 280 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~Ne~ev~~~l~~~----gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHG-AgLtn~lFl~pg 280 (385)
.-++++|.|+...+|- +..+|.+. +..|.+... .+-++ -+..++|||+|+.=| +++-..=|.+||
T Consensus 157 Gk~vvViGrS~iVGkP------la~lL~~~~~~~~aTVtvchs-~T~~l---~~~~~~ADIvIsAvGkp~~i~~~~ik~g 226 (297)
T PRK14167 157 GADVVVVGRSDIVGKP------MANLLIQKADGGNATVTVCHS-RTDDL---AAKTRRADIVVAAAGVPELIDGSMLSEG 226 (297)
T ss_pred CCEEEEECCCcccHHH------HHHHHhcCccCCCCEEEEeCC-CCCCH---HHHHhhCCEEEEccCCcCccCHHHcCCC
Confidence 3478999998875543 34455554 678887643 23333 357899999998666 678888889999
Q ss_pred cEEEEE
Q 043548 281 SVFVQV 286 (385)
Q Consensus 281 s~viEi 286 (385)
++||-+
T Consensus 227 aiVIDv 232 (297)
T PRK14167 227 ATVIDV 232 (297)
T ss_pred CEEEEc
Confidence 999986
No 64
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=46.52 E-value=28 Score=27.54 Aligned_cols=43 Identities=26% Similarity=0.373 Sum_probs=28.9
Q ss_pred cHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeechhhhhhhhcc
Q 043548 224 NQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHGAALTHSLFL 277 (385)
Q Consensus 224 Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHGAgLtn~lFl 277 (385)
++.+|.++|++.||+|+.++... -+..+|.+| +-|-. +|++=+
T Consensus 9 ~Ls~v~~~L~~~GyeVv~l~~~~---------~~~~~daiV-vtG~~-~n~mg~ 51 (80)
T PF03698_consen 9 GLSNVKEALREKGYEVVDLENEQ---------DLQNVDAIV-VTGQD-TNMMGI 51 (80)
T ss_pred CchHHHHHHHHCCCEEEecCCcc---------ccCCcCEEE-EECCC-cccccc
Confidence 46789999999999999876432 356788777 33422 354433
No 65
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.93 E-value=1.6e+02 Score=29.09 Aligned_cols=71 Identities=14% Similarity=0.305 Sum_probs=50.9
Q ss_pred CCeEEEEEccCCCCcccccHHHHHHHHHHC----CCEEEEecCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCC
Q 043548 206 RPRLMLMSRRGGLGRVILNQVEVKRVAEDT----GFEVTVFEPTPKTSLRQAYALINSSHAMVGVHG-AALTHSLFLRPG 280 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~Ne~ev~~~l~~~----gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHG-AgLtn~lFl~pg 280 (385)
.-++++|.|+...+|- +..+|.+. +..|.+... .+.++.+ ..++|||+|..=| +++-..=|.+||
T Consensus 157 GK~vvViGrS~iVGkP------la~lL~~~~~~~~aTVtvchs-~T~nl~~---~~~~ADIvIsAvGkp~~i~~~~vk~g 226 (293)
T PRK14185 157 GKKCVVLGRSNIVGKP------MAQLMMQKAYPGDCTVTVCHS-RSKNLKK---ECLEADIIIAALGQPEFVKADMVKEG 226 (293)
T ss_pred CCEEEEECCCccchHH------HHHHHHcCCCCCCCEEEEecC-CCCCHHH---HHhhCCEEEEccCCcCccCHHHcCCC
Confidence 3488999998865543 44566655 578887743 3444444 5678999998766 567777788999
Q ss_pred cEEEEE
Q 043548 281 SVFVQV 286 (385)
Q Consensus 281 s~viEi 286 (385)
++||-+
T Consensus 227 avVIDv 232 (293)
T PRK14185 227 AVVIDV 232 (293)
T ss_pred CEEEEe
Confidence 999986
No 66
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=44.38 E-value=37 Score=29.33 Aligned_cols=52 Identities=15% Similarity=0.275 Sum_probs=37.3
Q ss_pred cccHHHHHHHHHHCCCEEEEec--CCCCCCHHHHHHHH-hcCCEEEeechhhhhh
Q 043548 222 ILNQVEVKRVAEDTGFEVTVFE--PTPKTSLRQAYALI-NSSHAMVGVHGAALTH 273 (385)
Q Consensus 222 i~Ne~ev~~~l~~~gf~v~~~~--~~~~~s~~eq~~l~-~~advlVGvHGAgLtn 273 (385)
=.|..-+.+.|++.|+++.... +++.-.+.++++.. .++|++|..=|+|.+.
T Consensus 26 d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~g~g~ 80 (144)
T TIGR00177 26 DSNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTGVGP 80 (144)
T ss_pred eCcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCCCCCC
Confidence 3466778899999999887443 33334567776644 6899999998887654
No 67
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=44.33 E-value=1.7e+02 Score=28.17 Aligned_cols=68 Identities=16% Similarity=0.125 Sum_probs=43.8
Q ss_pred cHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHH--hcCCEEEeechhhh----hhhhccCC-Cc-EEEEEeeCCc
Q 043548 224 NQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALI--NSSHAMVGVHGAAL----THSLFLRP-GS-VFVQVVPLGL 291 (385)
Q Consensus 224 Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~--~~advlVGvHGAgL----tn~lFl~p-gs-~viEi~P~g~ 291 (385)
...++++.|++.|+++.+..........++++.. ...|+||.+=|=|- .|.++-.+ +. .-+=++|.|.
T Consensus 15 ~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGTi~ev~ngl~~~~~~~~~~lgiiP~GT 90 (293)
T TIGR03702 15 DVREAVGDLRDEGIQLHVRVTWEKGDAQRYVAEALALGVSTVIAGGGDGTLREVATALAQIRDDAAPALGLLPLGT 90 (293)
T ss_pred HHHHHHHHHHHCCCeEEEEEecCCCCHHHHHHHHHHcCCCEEEEEcCChHHHHHHHHHHhhCCCCCCcEEEEcCCc
Confidence 4567788899999886554332234556666443 55789999999884 55554221 21 3477889883
No 68
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=44.25 E-value=99 Score=26.69 Aligned_cols=54 Identities=17% Similarity=0.138 Sum_probs=39.1
Q ss_pred CCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCE
Q 043548 205 TRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHA 262 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~adv 262 (385)
++|++++..=.+- ..-+...-+..+++..||+|+.+-. ..|.++.++.+.+.++
T Consensus 2 ~~~~vl~~~~~gD--~H~lG~~iv~~~lr~~G~eVi~LG~--~vp~e~i~~~a~~~~~ 55 (137)
T PRK02261 2 KKKTVVLGVIGAD--CHAVGNKILDRALTEAGFEVINLGV--MTSQEEFIDAAIETDA 55 (137)
T ss_pred CCCEEEEEeCCCC--hhHHHHHHHHHHHHHCCCEEEECCC--CCCHHHHHHHHHHcCC
Confidence 3566666655444 5555556666788999999998754 7999999999877554
No 69
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=44.24 E-value=2e+02 Score=30.65 Aligned_cols=93 Identities=15% Similarity=0.126 Sum_probs=62.8
Q ss_pred cccccHHHHHHHHHHCCCEEEEecCC-CCCCHHH-HHH----------HHhcCCEEEeechhhhhhhhccCCCcEEEEEe
Q 043548 220 RVILNQVEVKRVAEDTGFEVTVFEPT-PKTSLRQ-AYA----------LINSSHAMVGVHGAALTHSLFLRPGSVFVQVV 287 (385)
Q Consensus 220 R~i~Ne~ev~~~l~~~gf~v~~~~~~-~~~s~~e-q~~----------l~~~advlVGvHGAgLtn~lFl~pgs~viEi~ 287 (385)
||+-=-.+.++.|.+.||+|.+-... +...|.+ .++ .+.+||+++.+.--...-.=+|++|.++|-++
T Consensus 13 ~RVAltP~~v~~L~k~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~~~~adiIlkV~~P~~~e~~~l~~g~tli~~l 92 (511)
T TIGR00561 13 CRVAATPKTVQQLLKLGFDVLVETGAGAKASFADRAFESAGAGIVDGTLFWQSDIILKVNAPSDAEIAELPAGKALVSFI 92 (511)
T ss_pred eeeccCHHHHHHHHhCCCEEEEECCCCcCCCcCHHHHHHcCCEEecccchhcCCEEEEeCCCCHHHHHhcCCCCEEEEEc
Confidence 55555677788888999998764321 3344422 222 23478999999988888888999999999776
Q ss_pred eCCccccccccHHHHHhhcCCcEEEEEec
Q 043548 288 PLGLEWVAEVCFGTSAKAMGLDYMEYKIN 316 (385)
Q Consensus 288 P~g~~~~~~~~y~~~A~~~gl~Y~~y~~~ 316 (385)
-+. .....-+.....|+..++|+.-
T Consensus 93 ~p~----~n~~ll~~l~~k~it~ia~E~v 117 (511)
T TIGR00561 93 WPA----QNPELMEKLAAKNITVLAMDAV 117 (511)
T ss_pred Ccc----CCHHHHHHHHHcCCEEEEeecc
Confidence 432 2333444445678888888743
No 70
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.08 E-value=60 Score=31.86 Aligned_cols=72 Identities=13% Similarity=0.166 Sum_probs=51.9
Q ss_pred CCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEE
Q 043548 205 TRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHG-AALTHSLFLRPGSVF 283 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHG-AgLtn~lFl~pgs~v 283 (385)
..-++++|.|....+ .-+..+|.+.|..|.+.... +-. .-+...+|||+|..=| +++-..=|.+||++|
T Consensus 163 ~Gk~vvViGrs~iVG------kPla~lL~~~~atVtv~hs~-T~~---l~~~~~~ADIvv~AvG~p~~i~~~~vk~gavV 232 (287)
T PRK14176 163 EGKNAVIVGHSNVVG------KPMAAMLLNRNATVSVCHVF-TDD---LKKYTLDADILVVATGVKHLIKADMVKEGAVI 232 (287)
T ss_pred CCCEEEEECCCcccH------HHHHHHHHHCCCEEEEEecc-CCC---HHHHHhhCCEEEEccCCccccCHHHcCCCcEE
Confidence 345889999887544 34566778889999887532 333 3446799999986433 566667789999999
Q ss_pred EEE
Q 043548 284 VQV 286 (385)
Q Consensus 284 iEi 286 (385)
|.+
T Consensus 233 IDv 235 (287)
T PRK14176 233 FDV 235 (287)
T ss_pred EEe
Confidence 987
No 71
>PRK13054 lipid kinase; Reviewed
Probab=44.06 E-value=2.1e+02 Score=27.66 Aligned_cols=82 Identities=12% Similarity=0.067 Sum_probs=49.2
Q ss_pred eEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHH--hcCCEEEeechhhhh----hhhccCC-C
Q 043548 208 RLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALI--NSSHAMVGVHGAALT----HSLFLRP-G 280 (385)
Q Consensus 208 rv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~--~~advlVGvHGAgLt----n~lFl~p-g 280 (385)
++++|--.++ +.-....++++.+++.|+++.+......-...++++.. ...|++|.+=|=|-- |.+.-.+ +
T Consensus 5 ~~~~i~N~~~--~~~~~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~evv~~l~~~~~~ 82 (300)
T PRK13054 5 KSLLILNGKS--AGNEELREAVGLLREEGHTLHVRVTWEKGDAARYVEEALALGVATVIAGGGDGTINEVATALAQLEGD 82 (300)
T ss_pred eEEEEECCCc--cchHHHHHHHHHHHHcCCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEECCccHHHHHHHHHHhhccC
Confidence 4444443333 33345567788899999886654332334566666543 568999999998854 4443222 2
Q ss_pred c-EEEEEeeCCc
Q 043548 281 S-VFVQVVPLGL 291 (385)
Q Consensus 281 s-~viEi~P~g~ 291 (385)
. .-+=++|.|.
T Consensus 83 ~~~~lgiiP~GT 94 (300)
T PRK13054 83 ARPALGILPLGT 94 (300)
T ss_pred CCCcEEEEeCCc
Confidence 2 4578899983
No 72
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=41.94 E-value=49 Score=29.63 Aligned_cols=53 Identities=17% Similarity=0.323 Sum_probs=41.3
Q ss_pred HHHHHHHHHCCCEEEEecCCCCCCHHHHHHHH-hcCCEEEeechhh---hhhhhccC
Q 043548 226 VEVKRVAEDTGFEVTVFEPTPKTSLRQAYALI-NSSHAMVGVHGAA---LTHSLFLR 278 (385)
Q Consensus 226 ~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~-~~advlVGvHGAg---Ltn~lFl~ 278 (385)
+++.+..++.|++|+.+.......+++-...+ ..+-|++|.-|+| |.|.|.-.
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhh
Confidence 57888899999999988765567788877777 4566799999988 77777654
No 73
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=41.76 E-value=1.2e+02 Score=29.39 Aligned_cols=63 Identities=19% Similarity=0.236 Sum_probs=41.1
Q ss_pred CCeEEEEEccCCCCcccc--cHHHHHHHHHHCCCEEEEe-c-------------------CCCCCCHHHHHHHHhcCCEE
Q 043548 206 RPRLMLMSRRGGLGRVIL--NQVEVKRVAEDTGFEVTVF-E-------------------PTPKTSLRQAYALINSSHAM 263 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~--Ne~ev~~~l~~~gf~v~~~-~-------------------~~~~~s~~eq~~l~~~advl 263 (385)
++.++++.-.....|+.- +-.||++.+.+.|+.+++. . ....+++.|-+.+++.||++
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e~~~~~~i~~~~~~~~l~g~~sL~elaali~~a~l~ 257 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEHEEQRAKRLAEGFPYVEVLPKLSLEQVARVLAGAKAV 257 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHccCCcceecCCCCHHHHHHHHHhCCEE
Confidence 344555443322246654 3467887777778877654 1 11247899999999999999
Q ss_pred Eeech
Q 043548 264 VGVHG 268 (385)
Q Consensus 264 VGvHG 268 (385)
||.=.
T Consensus 258 I~nDS 262 (322)
T PRK10964 258 VSVDT 262 (322)
T ss_pred EecCC
Confidence 99743
No 74
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=41.40 E-value=1.5e+02 Score=28.84 Aligned_cols=94 Identities=15% Similarity=0.111 Sum_probs=55.3
Q ss_pred eEEEEEccCCCCcccccHHHHHHHHHHCCCE--EEEecCCCCCCHHHHHHHHhcCCEEEeechhhhhh---------hhc
Q 043548 208 RLMLMSRRGGLGRVILNQVEVKRVAEDTGFE--VTVFEPTPKTSLRQAYALINSSHAMVGVHGAALTH---------SLF 276 (385)
Q Consensus 208 rv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~--v~~~~~~~~~s~~eq~~l~~~advlVGvHGAgLtn---------~lF 276 (385)
++.+++|+.. .....+++.+.+.+.+.. +...+. .+..+.-+.+..+|+||-.--.|+.. .-+
T Consensus 152 ~V~I~~R~~~---~~~~a~~l~~~l~~~~~~~~~~~~d~---~~~~~~~~~~~~~DilINaTp~Gm~~~~~~~~~~~~~~ 225 (289)
T PRK12548 152 EITIFNIKDD---FYERAEQTAEKIKQEVPECIVNVYDL---NDTEKLKAEIASSDILVNATLVGMKPNDGETNIKDTSV 225 (289)
T ss_pred EEEEEeCCch---HHHHHHHHHHHHhhcCCCceeEEech---hhhhHHHhhhccCCEEEEeCCCCCCCCCCCCCCCcHHh
Confidence 4777887541 111235555555554322 322221 12222234667889999777666643 225
Q ss_pred cCCCcEEEEEeeCCccccccccHHHHHhhcCCcEE
Q 043548 277 LRPGSVFVQVVPLGLEWVAEVCFGTSAKAMGLDYM 311 (385)
Q Consensus 277 l~pgs~viEi~P~g~~~~~~~~y~~~A~~~gl~Y~ 311 (385)
++++.+|++++=. + ..+.|-..|+..|.+..
T Consensus 226 l~~~~~v~D~vY~---P-~~T~ll~~A~~~G~~~~ 256 (289)
T PRK12548 226 FRKDLVVADTVYN---P-KKTKLLEDAEAAGCKTV 256 (289)
T ss_pred cCCCCEEEEecCC---C-CCCHHHHHHHHCCCeee
Confidence 7888899998722 1 35778999999998654
No 75
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=41.38 E-value=1.3e+02 Score=26.50 Aligned_cols=54 Identities=20% Similarity=0.218 Sum_probs=32.7
Q ss_pred CCCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCC
Q 043548 204 STRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSH 261 (385)
Q Consensus 204 ~~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~ad 261 (385)
.+|||+++..=.-. + .=.-..-+..+++..||+|+..-. ..+-+|-++..-..|
T Consensus 10 g~rprvlvak~GlD-g-Hd~gakvia~~l~d~GfeVi~~g~--~~tp~e~v~aA~~~d 63 (143)
T COG2185 10 GARPRVLVAKLGLD-G-HDRGAKVIARALADAGFEVINLGL--FQTPEEAVRAAVEED 63 (143)
T ss_pred CCCceEEEeccCcc-c-cccchHHHHHHHHhCCceEEecCC--cCCHHHHHHHHHhcC
Confidence 47899877643321 1 111124566789999999997643 456677777663333
No 76
>PRK06932 glycerate dehydrogenase; Provisional
Probab=40.81 E-value=3.7e+02 Score=26.49 Aligned_cols=133 Identities=14% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCEEEEecCCC----CCCHHHHHHHHhcCCEEE----------eechhhhhhhhccCCCcEEEEEeeCC-
Q 043548 226 VEVKRVAEDTGFEVTVFEPTP----KTSLRQAYALINSSHAMV----------GVHGAALTHSLFLRPGSVFVQVVPLG- 290 (385)
Q Consensus 226 ~ev~~~l~~~gf~v~~~~~~~----~~s~~eq~~l~~~advlV----------GvHGAgLtn~lFl~pgs~viEi~P~g- 290 (385)
.++.+.++.+|.+|+..+... ...+.+.-+++..||+++ ++=|+..-..| +||+.+|=+---+
T Consensus 160 ~~va~~l~~fg~~V~~~~~~~~~~~~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~m--k~ga~lIN~aRG~~ 237 (314)
T PRK06932 160 TEVGRLAQALGMKVLYAEHKGASVCREGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALM--KPTAFLINTGRGPL 237 (314)
T ss_pred HHHHHHHhcCCCEEEEECCCcccccccccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhC--CCCeEEEECCCccc
Q ss_pred ccccccccHHHHHhhcCCcEEEEEecccccchhhhcCCCCccc----cCCccc---cCCCcchhhhhhhhcCCceEEchH
Q 043548 291 LEWVAEVCFGTSAKAMGLDYMEYKINAEESSLIEKYNKNDTVI----KDPVAF---RGKSWSDAAMNIYLKEQNVKLDLF 363 (385)
Q Consensus 291 ~~~~~~~~y~~~A~~~gl~Y~~y~~~~~essl~~~y~~d~~v~----~dP~~~---~~~gw~~~~~~~yl~~Qdv~ldi~ 363 (385)
+ ....-...-+.=.+......+-..|-- +.+||.. +-|..+ |-.|+ -.+
T Consensus 238 V---de~AL~~aL~~g~i~gAaLDV~~~EP~-----~~~~pl~~~~~~~pnvilTPHia~~----------------t~e 293 (314)
T PRK06932 238 V---DEQALLDALENGKIAGAALDVLVKEPP-----EKDNPLIQAAKRLPNLLITPHIAWA----------------SDS 293 (314)
T ss_pred c---CHHHHHHHHHcCCccEEEEecCCCCCC-----CCCChhhHhhcCCCCEEECCccccC----------------cHH
Q ss_pred hHHHHHHHHHHHHHhhhhcCC
Q 043548 364 RFREYLKKVYKKAKRFMDKGE 384 (385)
Q Consensus 364 rF~~~L~~a~~~~~~~~~~~~ 384 (385)
........+++.+++|+..++
T Consensus 294 ~~~~~~~~~~~ni~~~~~~g~ 314 (314)
T PRK06932 294 AVTTLVNKVAQNIEEFVQQGK 314 (314)
T ss_pred HHHHHHHHHHHHHHHHHhcCC
No 77
>PRK13243 glyoxylate reductase; Reviewed
Probab=40.32 E-value=3.8e+02 Score=26.57 Aligned_cols=130 Identities=16% Similarity=0.107 Sum_probs=72.1
Q ss_pred HHHHHHHHHCCCEEEEecCCCCC--------CHHHHHHHHhcCCEEEeech--h---hhh---hhhccCCCcEEEEEeeC
Q 043548 226 VEVKRVAEDTGFEVTVFEPTPKT--------SLRQAYALINSSHAMVGVHG--A---ALT---HSLFLRPGSVFVQVVPL 289 (385)
Q Consensus 226 ~ev~~~l~~~gf~v~~~~~~~~~--------s~~eq~~l~~~advlVGvHG--A---gLt---n~lFl~pgs~viEi~P~ 289 (385)
.++.+.|+.+|++|...+..... ...+.-+++.+||+++-.=- . ++- .+=-|+||+.+|-+---
T Consensus 163 ~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg 242 (333)
T PRK13243 163 QAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARG 242 (333)
T ss_pred HHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCc
Confidence 46788899999999988753211 11233567889998764321 1 111 12347999999977433
Q ss_pred CccccccccHHHHHhhc---CCcEEEEEecccccchhhhcCCCCccccCCcc---ccCCCcchhhhhhhhcCCceEEchH
Q 043548 290 GLEWVAEVCFGTSAKAM---GLDYMEYKINAEESSLIEKYNKNDTVIKDPVA---FRGKSWSDAAMNIYLKEQNVKLDLF 363 (385)
Q Consensus 290 g~~~~~~~~y~~~A~~~---gl~Y~~y~~~~~essl~~~y~~d~~v~~dP~~---~~~~gw~~~~~~~yl~~Qdv~ldi~ 363 (385)
++ ..-..+.+.+ .+......+-..|- .+ +||+..-|.. .|-.|+. .+
T Consensus 243 ~~-----vd~~aL~~aL~~g~i~gAaLDV~~~EP-----~~-~~pL~~~~nvilTPHia~~t----------------~e 295 (333)
T PRK13243 243 KV-----VDTKALVKALKEGWIAGAGLDVFEEEP-----YY-NEELFSLKNVVLAPHIGSAT----------------FE 295 (333)
T ss_pred hh-----cCHHHHHHHHHcCCeEEEEeccCCCCC-----CC-CchhhcCCCEEECCcCCcCH----------------HH
Confidence 22 2233443322 24445555554442 12 5665555542 2544441 23
Q ss_pred hHHHHHHHHHHHHHhhhhc
Q 043548 364 RFREYLKKVYKKAKRFMDK 382 (385)
Q Consensus 364 rF~~~L~~a~~~~~~~~~~ 382 (385)
.+......+++.+.+|+..
T Consensus 296 ~~~~~~~~~~~ni~~~~~g 314 (333)
T PRK13243 296 AREGMAELVAENLIAFKRG 314 (333)
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 4556666777777777653
No 78
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=39.41 E-value=79 Score=25.28 Aligned_cols=68 Identities=15% Similarity=0.126 Sum_probs=41.8
Q ss_pred cHHHHHHHHHHCCCEEEEe--cCCCCCCHHHHHHHHhcCCEEEeechhhhhhhhccCCCcEEEEEeeCCccccccccHHH
Q 043548 224 NQVEVKRVAEDTGFEVTVF--EPTPKTSLRQAYALINSSHAMVGVHGAALTHSLFLRPGSVFVQVVPLGLEWVAEVCFGT 301 (385)
Q Consensus 224 Ne~ev~~~l~~~gf~v~~~--~~~~~~s~~eq~~l~~~advlVGvHGAgLtn~lFl~pgs~viEi~P~g~~~~~~~~y~~ 301 (385)
++.++.+.+++.|++.+.. +......-...-+.+.+||++|-+ ...+..+ ....-..
T Consensus 11 ~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~-----------------t~~vsH~----~~~~vk~ 69 (97)
T PF10087_consen 11 RERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVF-----------------TDYVSHN----AMWKVKK 69 (97)
T ss_pred cHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEE-----------------eCCcChH----HHHHHHH
Confidence 4678888999999998887 222122222345578899998732 1122111 2234567
Q ss_pred HHhhcCCcEEE
Q 043548 302 SAKAMGLDYME 312 (385)
Q Consensus 302 ~A~~~gl~Y~~ 312 (385)
.|+..|+.++.
T Consensus 70 ~akk~~ip~~~ 80 (97)
T PF10087_consen 70 AAKKYGIPIIY 80 (97)
T ss_pred HHHHcCCcEEE
Confidence 77888887773
No 79
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=39.38 E-value=1.2e+02 Score=32.10 Aligned_cols=102 Identities=16% Similarity=0.220 Sum_probs=70.1
Q ss_pred CCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEee-chhhhhhhhccCC--Cc
Q 043548 205 TRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGV-HGAALTHSLFLRP--GS 281 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGv-HGAgLtn~lFl~p--gs 281 (385)
.+++|=||.-..-..+.--|..||.+.|++.|.+|..+-+. ..++ ++++-+.+|++=|.+ +-.|+.-.=+|.. |.
T Consensus 162 ~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn~v~~~-g~sl-~di~~~~~A~~NIvl~~~~g~~~A~~Le~~fgi 239 (513)
T CHL00076 162 DKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEINQIIPE-GGSV-EDLKNLPKAWFNIVPYREVGLMTAKYLEKEFGM 239 (513)
T ss_pred CCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEEEEECC-CCCH-HHHHhcccCcEEEEechhhhHHHHHHHHHHhCC
Confidence 56777777655332355668899999999999999755443 4455 456667888887766 3356555556654 55
Q ss_pred EEEEEeeCCccccccccHHHHHhhcCCc
Q 043548 282 VFVQVVPLGLEWVAEVCFGTSAKAMGLD 309 (385)
Q Consensus 282 ~viEi~P~g~~~~~~~~y~~~A~~~gl~ 309 (385)
-.+...|.|+. ....+-..+|+.+|..
T Consensus 240 P~i~~~PiGi~-~T~~fLr~la~~lg~~ 266 (513)
T CHL00076 240 PYISTTPMGIV-DTAECIRQIQKILNKL 266 (513)
T ss_pred CeEeeccCCHH-HHHHHHHHHHHHhCCC
Confidence 56777899963 2346778999999864
No 80
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=37.63 E-value=84 Score=32.04 Aligned_cols=97 Identities=14% Similarity=0.084 Sum_probs=61.2
Q ss_pred CCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEee-c--hhhhhhhhccCCCcE
Q 043548 206 RPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGV-H--GAALTHSLFLRPGSV 282 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGv-H--GAgLtn~lFl~pgs~ 282 (385)
+..|-+|.- . ...-|.+|+.+.|++.|.++...-+ ...+++|--+ +.+|.+-|.+ + |..++..|=-+=|.-
T Consensus 158 ~~~VNiig~--~--~~~~d~~el~~lL~~~Gl~v~~~~~-~~~s~eei~~-~~~A~lniv~~~~~~~~~a~~L~~~fGip 231 (410)
T cd01968 158 PYDINLIGE--F--NVAGELWGVKPLLEKLGIRVLASIT-GDSRVDEIRR-AHRAKLNVVQCSKSMIYLARKMEEKYGIP 231 (410)
T ss_pred CCcEEEECC--C--CCcccHHHHHHHHHHcCCeEEEEeC-CCCCHHHHHh-hhhCcEEEEEchhHHHHHHHHHHHHhCCC
Confidence 445666652 1 2345778999999999999875423 2466666544 6666665543 3 333433332244665
Q ss_pred EEEEeeCCccccccccHHHHHhhcCCc
Q 043548 283 FVQVVPLGLEWVAEVCFGTSAKAMGLD 309 (385)
Q Consensus 283 viEi~P~g~~~~~~~~y~~~A~~~gl~ 309 (385)
.+...|+|++. ...++..+|+.+|..
T Consensus 232 ~~~~~p~G~~~-t~~~l~~ia~~~g~~ 257 (410)
T cd01968 232 YIEVSFYGIRD-TSKSLRNIAELLGDE 257 (410)
T ss_pred eEecCcCcHHH-HHHHHHHHHHHhCCc
Confidence 66677888643 457899999999974
No 81
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=36.76 E-value=55 Score=27.78 Aligned_cols=51 Identities=22% Similarity=0.279 Sum_probs=36.8
Q ss_pred ccHHHHHHHHHHCCCEEEEec--CCCCCCHHHHHHHH-hcCCEEEeechhhhhh
Q 043548 223 LNQVEVKRVAEDTGFEVTVFE--PTPKTSLRQAYALI-NSSHAMVGVHGAALTH 273 (385)
Q Consensus 223 ~Ne~ev~~~l~~~gf~v~~~~--~~~~~s~~eq~~l~-~~advlVGvHGAgLtn 273 (385)
.|-.-+.+.+++.|+++.... +++.-.+.++++.. .++|++|-.=|.|.+-
T Consensus 19 ~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~g~g~ 72 (133)
T cd00758 19 TNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGTGVGR 72 (133)
T ss_pred chHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCCCCCC
Confidence 456677788999999876442 33445677777644 6799999998888664
No 82
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=36.73 E-value=43 Score=33.26 Aligned_cols=45 Identities=18% Similarity=0.275 Sum_probs=28.8
Q ss_pred HHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeechhh
Q 043548 226 VEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHGAA 270 (385)
Q Consensus 226 ~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHGAg 270 (385)
.|++++|+..||+++++|.-.----+-.+.-+..+-+++-..|+|
T Consensus 133 ~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~~pg~G 177 (323)
T COG1703 133 REAIKLLDAAGYDVIIVETVGVGQSEVDIANMADTFLVVMIPGAG 177 (323)
T ss_pred HHHHHHHHhcCCCEEEEEecCCCcchhHHhhhcceEEEEecCCCC
Confidence 588999999999999998431112223344445555566666665
No 83
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=36.53 E-value=34 Score=31.75 Aligned_cols=58 Identities=17% Similarity=0.248 Sum_probs=43.0
Q ss_pred HHHHHHHHhcCCEEEeechhhhhhhhccCCCcEEEEEeeCCccccccccHH--HHHhhcCCcEEEEE
Q 043548 250 LRQAYALINSSHAMVGVHGAALTHSLFLRPGSVFVQVVPLGLEWVAEVCFG--TSAKAMGLDYMEYK 314 (385)
Q Consensus 250 ~~eq~~l~~~advlVGvHGAgLtn~lFl~pgs~viEi~P~g~~~~~~~~y~--~~A~~~gl~Y~~y~ 314 (385)
+++.++.-.++||+|++-=-|=||++|+++ .-+.+- +| ...++. ..|+.+|+.+.-|.
T Consensus 104 i~~~~~~~~d~dvviaP~~gGGTn~L~~r~--~~~~~~-y~----g~SF~~Hl~~Ark~G~~~~~~d 163 (210)
T COG1920 104 IERALSAAKDADVVIAPGRGGGTNVLFARK--SAFRPR-YG----GVSFLRHLEEARKRGLVVLTYD 163 (210)
T ss_pred HHHHHHhcCCCcEEEecCCCCceEEEEEec--cccccc-cc----CccHHHHHHHHHHcCCEEEEec
Confidence 667788888899999999999999999999 333321 11 223444 46899999999874
No 84
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=36.31 E-value=51 Score=28.57 Aligned_cols=39 Identities=13% Similarity=0.107 Sum_probs=30.5
Q ss_pred HHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCE-EEee
Q 043548 226 VEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHA-MVGV 266 (385)
Q Consensus 226 ~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~adv-lVGv 266 (385)
.-+..+|+..||+|+.+- ...|.++.++.....++ +||+
T Consensus 19 ~iv~~~l~~~GfeVi~LG--~~v~~e~~v~aa~~~~adiVgl 58 (134)
T TIGR01501 19 KILDHAFTNAGFNVVNLG--VLSPQEEFIKAAIETKADAILV 58 (134)
T ss_pred HHHHHHHHHCCCEEEECC--CCCCHHHHHHHHHHcCCCEEEE
Confidence 455678899999999764 47999999999888666 5555
No 85
>PRK13057 putative lipid kinase; Reviewed
Probab=36.29 E-value=1.9e+02 Score=27.71 Aligned_cols=67 Identities=13% Similarity=0.239 Sum_probs=43.7
Q ss_pred cHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHH-HhcCCEEEeechhhhhhhh---ccCCCcEEEEEeeCCc
Q 043548 224 NQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYAL-INSSHAMVGVHGAALTHSL---FLRPGSVFVQVVPLGL 291 (385)
Q Consensus 224 Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l-~~~advlVGvHGAgLtn~l---Fl~pgs~viEi~P~g~ 291 (385)
..+++.+.|++.|+++............+.++. -...|.+|.+=|=|--|.+ .+..+ .-+=++|.|.
T Consensus 14 ~~~~i~~~l~~~g~~~~~~~t~~~~~a~~~~~~~~~~~d~iiv~GGDGTv~~v~~~l~~~~-~~lgiiP~GT 84 (287)
T PRK13057 14 ALAAARAALEAAGLELVEPPAEDPDDLSEVIEAYADGVDLVIVGGGDGTLNAAAPALVETG-LPLGILPLGT 84 (287)
T ss_pred hHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHcCCCEEEEECchHHHHHHHHHHhcCC-CcEEEECCCC
Confidence 467889999999999776543223334444433 4567999999998865443 23333 3467889883
No 86
>PRK03094 hypothetical protein; Provisional
Probab=36.23 E-value=53 Score=26.00 Aligned_cols=21 Identities=19% Similarity=0.469 Sum_probs=17.6
Q ss_pred cHHHHHHHHHHCCCEEEEecC
Q 043548 224 NQVEVKRVAEDTGFEVTVFEP 244 (385)
Q Consensus 224 Ne~ev~~~l~~~gf~v~~~~~ 244 (385)
++..|.+.|++.||+|+-++.
T Consensus 9 ~Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 9 SLTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred CcHHHHHHHHHCCCEEEecCc
Confidence 467899999999999997753
No 87
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=36.12 E-value=1.4e+02 Score=30.67 Aligned_cols=101 Identities=15% Similarity=0.159 Sum_probs=67.7
Q ss_pred CCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCC----------------CCCCHHHHHHHHhcCCEEEeech
Q 043548 205 TRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPT----------------PKTSLRQAYALINSSHAMVGVHG 268 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~----------------~~~s~~eq~~l~~~advlVGvHG 268 (385)
.+.++-+|.-... .--|.+|+.+.|++.|.++..+-+. ..-+--|+++-+.+|.+-|.++-
T Consensus 154 ~~~~VNlig~~~~---~~~d~~el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~gg~~~e~i~~~~~A~lniv~~~ 230 (428)
T cd01965 154 KNGKVNLLPGFPL---TPGDVREIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKGGTTLEEIRDAGNAKATIALGE 230 (428)
T ss_pred CCCeEEEECCCCC---CccCHHHHHHHHHHcCCCEEEecCcccccCCCCCCCccccCCCCCcHHHHHHhccCcEEEEECh
Confidence 4456777753322 1127899999999999998765321 01133466677888888888877
Q ss_pred -hhhhhhhccC--CCcEEEEEe-eCCccccccccHHHHHhhcCCc
Q 043548 269 -AALTHSLFLR--PGSVFVQVV-PLGLEWVAEVCFGTSAKAMGLD 309 (385)
Q Consensus 269 -AgLtn~lFl~--pgs~viEi~-P~g~~~~~~~~y~~~A~~~gl~ 309 (385)
+|..-.-+|. -|.-.+..- |+|++- ...++..+|+..|..
T Consensus 231 ~~~~~~a~~L~e~~GiP~~~~~~p~G~~~-t~~~l~~l~~~~g~~ 274 (428)
T cd01965 231 YSGRKAAKALEEKFGVPYILFPTPIGLKA-TDEFLRALSKLSGKP 274 (428)
T ss_pred hhhHHHHHHHHHHHCCCeeecCCCcChHH-HHHHHHHHHHHHCCC
Confidence 7766666664 466666664 888642 356889999988865
No 88
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=35.82 E-value=1.4e+02 Score=25.54 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=29.4
Q ss_pred HHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCE-EEeech
Q 043548 226 VEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHA-MVGVHG 268 (385)
Q Consensus 226 ~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~adv-lVGvHG 268 (385)
+=+..+++..||+|+... ...|.++.++.....++ +||+-+
T Consensus 20 ~iv~~~l~~~GfeVi~lg--~~~s~e~~v~aa~e~~adii~iSs 61 (132)
T TIGR00640 20 KVIATAYADLGFDVDVGP--LFQTPEEIARQAVEADVHVVGVSS 61 (132)
T ss_pred HHHHHHHHhCCcEEEECC--CCCCHHHHHHHHHHcCCCEEEEcC
Confidence 345567888999999764 35888888888877666 555543
No 89
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=35.55 E-value=1.4e+02 Score=27.33 Aligned_cols=66 Identities=15% Similarity=0.095 Sum_probs=46.1
Q ss_pred CCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeechhhhh
Q 043548 205 TRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHGAALT 272 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHGAgLt 272 (385)
..+++++|.-.... .=...++..+++++.|+++..+......+-++..+.+.+||+|+=.=|.-..
T Consensus 28 ~~~~i~~iptA~~~--~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~ 93 (210)
T cd03129 28 AGARVLFIPTASGD--RDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLR 93 (210)
T ss_pred CCCeEEEEeCCCCC--hHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHH
Confidence 56899999876542 1123467788889999987755432234668889999999998866665543
No 90
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=35.24 E-value=56 Score=29.47 Aligned_cols=93 Identities=15% Similarity=0.184 Sum_probs=47.2
Q ss_pred EEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeechhhhhhhhccCCCcEEEEEeeC
Q 043548 210 MLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHGAALTHSLFLRPGSVFVQVVPL 289 (385)
Q Consensus 210 ~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHGAgLtn~lFl~pgs~viEi~P~ 289 (385)
.+++|.+..-+-.-+..++++.|++.|.++.+..-...-....| ++..-++- .+-.....+...-.-+||.|-
T Consensus 35 ~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~--~L~~l~i~-----~~~~~~~~~~~~F~~~eI~~g 107 (169)
T PF12689_consen 35 VVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARE--LLKLLEID-----DADGDGVPLIEYFDYLEIYPG 107 (169)
T ss_dssp -EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHH--HHHHTT-C---------------CCECEEEESSS
T ss_pred EEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHH--HHHhcCCC-----ccccccccchhhcchhheecC
Confidence 67888887667777889999999999999988753211123322 22222332 222344445555455888885
Q ss_pred CccccccccHHHHHhhcCCcEEEE
Q 043548 290 GLEWVAEVCFGTSAKAMGLDYMEY 313 (385)
Q Consensus 290 g~~~~~~~~y~~~A~~~gl~Y~~y 313 (385)
. ...+|.++.+..|+.|-+-
T Consensus 108 s----K~~Hf~~i~~~tgI~y~eM 127 (169)
T PF12689_consen 108 S----KTTHFRRIHRKTGIPYEEM 127 (169)
T ss_dssp -----HHHHHHHHHHHH---GGGE
T ss_pred c----hHHHHHHHHHhcCCChhHE
Confidence 3 5689999999999988753
No 91
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=34.95 E-value=3e+02 Score=26.35 Aligned_cols=83 Identities=13% Similarity=0.051 Sum_probs=49.8
Q ss_pred eEEEEEccCCCC-cccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHH--hcCCEEEeechhhhhh----hhccCCC
Q 043548 208 RLMLMSRRGGLG-RVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALI--NSSHAMVGVHGAALTH----SLFLRPG 280 (385)
Q Consensus 208 rv~~isR~~~~~-R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~--~~advlVGvHGAgLtn----~lFl~pg 280 (385)
|+.+|-...+.+ +.-...+++.+.+++.|+++.+..........++++.. ..+|++|.+=|=|--| .+.....
T Consensus 3 ~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDGTl~~v~~~l~~~~~ 82 (293)
T TIGR00147 3 EAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGGDGTINEVVNALIQLDD 82 (293)
T ss_pred eEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECCCChHHHHHHHHhcCCC
Confidence 555555543311 22223467888899999887665433233455555433 3478999998888654 4554333
Q ss_pred cEEEEEeeCC
Q 043548 281 SVFVQVVPLG 290 (385)
Q Consensus 281 s~viEi~P~g 290 (385)
...+=++|.|
T Consensus 83 ~~~lgiiP~G 92 (293)
T TIGR00147 83 IPALGILPLG 92 (293)
T ss_pred CCcEEEEcCc
Confidence 3467788988
No 92
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=34.73 E-value=40 Score=30.35 Aligned_cols=77 Identities=17% Similarity=0.186 Sum_probs=44.6
Q ss_pred HHHHHHHHHC-CCEEEEecCCCCCCHHHHHHHHhcCCEEEeechhhhhhhhccCCC-cEEEEEeeCC-ccccccccHHHH
Q 043548 226 VEVKRVAEDT-GFEVTVFEPTPKTSLRQAYALINSSHAMVGVHGAALTHSLFLRPG-SVFVQVVPLG-LEWVAEVCFGTS 302 (385)
Q Consensus 226 ~ev~~~l~~~-gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHGAgLtn~lFl~pg-s~viEi~P~g-~~~~~~~~y~~~ 302 (385)
.++.+.+++. .-+.+.......+++.+..+.+..-+=+||+| .|.||. ..++||+|.. .....-..-..+
T Consensus 94 ~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~H-------f~~P~~~~~lVEvv~~~~T~~~~~~~~~~~ 166 (180)
T PF02737_consen 94 QELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMH-------FFNPPHLMPLVEVVPGPKTSPETVDRVRAL 166 (180)
T ss_dssp HHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEE-------E-SSTTT--EEEEEE-TTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEe-------cccccccCceEEEeCCCCCCHHHHHHHHHH
Confidence 3566666665 44444444456899999999998888899999 456776 7999999975 321112233444
Q ss_pred HhhcCCc
Q 043548 303 AKAMGLD 309 (385)
Q Consensus 303 A~~~gl~ 309 (385)
++.+|..
T Consensus 167 ~~~~gk~ 173 (180)
T PF02737_consen 167 LRSLGKT 173 (180)
T ss_dssp HHHTT-E
T ss_pred HHHCCCE
Confidence 5555543
No 93
>PRK06436 glycerate dehydrogenase; Provisional
Probab=34.62 E-value=4.5e+02 Score=25.77 Aligned_cols=134 Identities=12% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCEEEEecCCCCCC-----HHHHHHHHhcCCEEEe----------echhhhhhhhccCCCcEEEEEeeCC
Q 043548 226 VEVKRVAEDTGFEVTVFEPTPKTS-----LRQAYALINSSHAMVG----------VHGAALTHSLFLRPGSVFVQVVPLG 290 (385)
Q Consensus 226 ~ev~~~l~~~gf~v~~~~~~~~~s-----~~eq~~l~~~advlVG----------vHGAgLtn~lFl~pgs~viEi~P~g 290 (385)
.++.+.++.+|++|+..+...... ..+.-+++.+||+++- +=++++-.. |+||+.+|-+---+
T Consensus 135 ~~vA~~l~afG~~V~~~~r~~~~~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~--mk~ga~lIN~sRG~ 212 (303)
T PRK06436 135 RRVALLAKAFGMNIYAYTRSYVNDGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSL--FRKGLAIINVARAD 212 (303)
T ss_pred HHHHHHHHHCCCEEEEECCCCcccCcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhc--CCCCeEEEECCCcc
Q ss_pred -ccccccccHHHHHhhcCCcEEEEEecccccchhhhcCCCCccccCCccccCCCcchhhhhhhhcCCceEEchHhHHHHH
Q 043548 291 -LEWVAEVCFGTSAKAMGLDYMEYKINAEESSLIEKYNKNDTVIKDPVAFRGKSWSDAAMNIYLKEQNVKLDLFRFREYL 369 (385)
Q Consensus 291 -~~~~~~~~y~~~A~~~gl~Y~~y~~~~~essl~~~y~~d~~v~~dP~~~~~~gw~~~~~~~yl~~Qdv~ldi~rF~~~L 369 (385)
+ ....-....+.-.+......+-.+|....+. .-..++-.| |-.|| ...+..+...
T Consensus 213 ~v---d~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~--~~~nviiTP---Hi~g~---------------~t~e~~~~~~ 269 (303)
T PRK06436 213 VV---DKNDMLNFLRNHNDKYYLSDVWWNEPIITET--NPDNVILSP---HVAGG---------------MSGEIMQPAV 269 (303)
T ss_pred cc---CHHHHHHHHHcCCceEEEEccCCCCCCCccC--CCCCEEECC---ccccc---------------cCHHHHHHHH
Q ss_pred HHHHHHHHhhhhcCC
Q 043548 370 KKVYKKAKRFMDKGE 384 (385)
Q Consensus 370 ~~a~~~~~~~~~~~~ 384 (385)
..+++.+.+|+..+.
T Consensus 270 ~~~~~ni~~~~~g~~ 284 (303)
T PRK06436 270 ALAFENIKNFFEGKP 284 (303)
T ss_pred HHHHHHHHHHHcCCC
No 94
>PLN02204 diacylglycerol kinase
Probab=34.47 E-value=2.4e+02 Score=30.67 Aligned_cols=91 Identities=11% Similarity=0.111 Sum_probs=52.0
Q ss_pred ccHHHHHHHHHHHhCCCCcCCCCCCCCCCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHH---HHH
Q 043548 178 KTFVHFRGLLDEAYSHGRIRNRNNSPSTRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLR---QAY 254 (385)
Q Consensus 178 ~~~~~F~~fl~~~~~l~~~~~~~~~~~~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~---eq~ 254 (385)
.....+.+.|...+... ....+.-++|+.-....+|...+-++|...+++.|+++.++......... +++
T Consensus 139 ~~~~~w~~~l~~~l~~~-------~~r~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~i~~~v~~T~~aghA~d~~~~~ 211 (601)
T PLN02204 139 QTCQSWVDRLNASLNKE-------VGRPKNLLVFVHPLSGKGSGSRTWETVSPIFIRAKVKTKVIVTERAGHAFDVMASI 211 (601)
T ss_pred HHHHHHHHHHHHHHhhc-------cCCCceEEEEECCCCCCcchHHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHH
Confidence 34455666666665421 11122235566655444565666778999999988775443321122223 333
Q ss_pred H--HHhcCCEEEeechhhhhhhh
Q 043548 255 A--LINSSHAMVGVHGAALTHSL 275 (385)
Q Consensus 255 ~--l~~~advlVGvHGAgLtn~l 275 (385)
+ .....|.||++=|=|+-|-+
T Consensus 212 ~~~~l~~~D~VVaVGGDGt~nEV 234 (601)
T PLN02204 212 SNKELKSYDGVIAVGGDGFFNEI 234 (601)
T ss_pred hhhhccCCCEEEEEcCccHHHHH
Confidence 2 14677999999998876543
No 95
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=34.39 E-value=66 Score=27.22 Aligned_cols=52 Identities=17% Similarity=0.319 Sum_probs=35.8
Q ss_pred ccHHHHHHHHHHCCCEEEEec--CCCCCCHHHHHH-HHhcCCEEEeechhhhhhh
Q 043548 223 LNQVEVKRVAEDTGFEVTVFE--PTPKTSLRQAYA-LINSSHAMVGVHGAALTHS 274 (385)
Q Consensus 223 ~Ne~ev~~~l~~~gf~v~~~~--~~~~~s~~eq~~-l~~~advlVGvHGAgLtn~ 274 (385)
.|..-+.+.+++.|++++... +++...+.+.++ +..++|++|-.=|+|.+.-
T Consensus 18 ~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliittGG~g~g~~ 72 (135)
T smart00852 18 SNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTGGTGPGPD 72 (135)
T ss_pred CcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEcCCCCCCCC
Confidence 356778899999999764321 333455666664 3467999999988886543
No 96
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=34.07 E-value=3.6e+02 Score=28.72 Aligned_cols=93 Identities=18% Similarity=0.186 Sum_probs=63.3
Q ss_pred cccccHHHHHHHHHHCCCEEEEecCC-CCCCHHH-HH-----------HHHhcCCEEEeechhhhhhhhccCCCcEEEEE
Q 043548 220 RVILNQVEVKRVAEDTGFEVTVFEPT-PKTSLRQ-AY-----------ALINSSHAMVGVHGAALTHSLFLRPGSVFVQV 286 (385)
Q Consensus 220 R~i~Ne~ev~~~l~~~gf~v~~~~~~-~~~s~~e-q~-----------~l~~~advlVGvHGAgLtn~lFl~pgs~viEi 286 (385)
||+-=-.+.++.|.+.||+|.+=... +...|.+ .+ +++ +||+++.+..-.....=+|++|.++|-+
T Consensus 14 ~RValtP~~v~~L~~~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~v~-~~diilkV~~P~~~e~~~l~~g~~li~~ 92 (509)
T PRK09424 14 TRVAATPKTVEQLLKLGFEVVVESGAGQLASFDDAAYREAGAEIVDGAAVW-QSDIILKVNAPSDDEIALLREGATLVSF 92 (509)
T ss_pred eEeccCHHHHHHHHHCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCcccc-cCCEEEEeCCCCHHHHHhcCCCCEEEEE
Confidence 55555677777888899998864321 3334422 11 345 6999999999988888899999999977
Q ss_pred eeCCccccccccHHHHHhhcCCcEEEEEecc
Q 043548 287 VPLGLEWVAEVCFGTSAKAMGLDYMEYKINA 317 (385)
Q Consensus 287 ~P~g~~~~~~~~y~~~A~~~gl~Y~~y~~~~ 317 (385)
+-+. .....-+.....|+.-++|+.-+
T Consensus 93 l~p~----~~~~l~~~l~~~~it~ia~e~vp 119 (509)
T PRK09424 93 IWPA----QNPELLEKLAARGVTVLAMDAVP 119 (509)
T ss_pred eCcc----cCHHHHHHHHHcCCEEEEeeccc
Confidence 6432 23334444456788888886544
No 97
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=33.87 E-value=2e+02 Score=27.77 Aligned_cols=62 Identities=24% Similarity=0.334 Sum_probs=40.4
Q ss_pred CCeEEEEEccCCCCcccc--cHHHHHHHHHHCCCEEEEe-cCC-------------------CCCCHHHHHHHHhcCCEE
Q 043548 206 RPRLMLMSRRGGLGRVIL--NQVEVKRVAEDTGFEVTVF-EPT-------------------PKTSLRQAYALINSSHAM 263 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~--Ne~ev~~~l~~~gf~v~~~-~~~-------------------~~~s~~eq~~l~~~advl 263 (385)
+|.+++.--.....|+.- +-.++++.+.+.|+.++.+ ... ..+++.|-+++++.||++
T Consensus 179 ~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~i~~~~~~~~l~g~~sL~el~ali~~a~l~ 258 (319)
T TIGR02193 179 APYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQRAERIAEALPGAVVLPKMSLAEVAALLAGADAV 258 (319)
T ss_pred CCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHhhCCCCeecCCCCHHHHHHHHHcCCEE
Confidence 455555544333346664 4458888777668877654 211 236888999999999999
Q ss_pred Eeec
Q 043548 264 VGVH 267 (385)
Q Consensus 264 VGvH 267 (385)
||.=
T Consensus 259 I~~D 262 (319)
T TIGR02193 259 VGVD 262 (319)
T ss_pred EeCC
Confidence 9864
No 98
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=33.48 E-value=1.7e+02 Score=29.52 Aligned_cols=59 Identities=19% Similarity=0.285 Sum_probs=38.0
Q ss_pred eEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCC----CCCHHHHHHHH--hcCCEEEeech
Q 043548 208 RLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTP----KTSLRQAYALI--NSSHAMVGVHG 268 (385)
Q Consensus 208 rv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~----~~s~~eq~~l~--~~advlVGvHG 268 (385)
|++++..++. .+---.+++.+.|++.|.++.+++.-+ ..++.+.++.+ .++|++||+=|
T Consensus 24 ~~livt~~~~--~~~~~~~~v~~~L~~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiGG 88 (386)
T cd08191 24 RALIVTDERM--AGTPVFAELVQALAAAGVEVEVFDGVLPDLPRSELCDAASAAARAGPDVIIGLGG 88 (386)
T ss_pred eEEEEECcch--hhcchHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 6667774443 333335778899999999887775322 12233444444 47899999998
No 99
>cd02410 archeal_CPSF_KH The archaeal cleavage and polyadenylation specificity factor (CPSF) contains an N-terminal K homology RNA-binding domain (KH). The archeal CPSFs are predicted to be metal-dependent RNases belonging to the beta-CASP family, a subgroup enzymes within the metallo-beta-lactamase fold. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH domains are known to bind single-stranded RNA or DNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=33.24 E-value=72 Score=28.13 Aligned_cols=79 Identities=16% Similarity=0.289 Sum_probs=53.4
Q ss_pred CCCeEEEEEccCCCCcccccHHHHHH-HHHHCCCEEEE-ecCCCCCCHHHHHHHHhcCCEEEeechhhhhhhhccCC-Cc
Q 043548 205 TRPRLMLMSRRGGLGRVILNQVEVKR-VAEDTGFEVTV-FEPTPKTSLRQAYALINSSHAMVGVHGAALTHSLFLRP-GS 281 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne~ev~~-~l~~~gf~v~~-~~~~~~~s~~eq~~l~~~advlVGvHGAgLtn~lFl~p-gs 281 (385)
..|.+++..+.. +.+.+..++++ .++++--.+++ .++..-++-++-.+.+.+ |-+-+||++|+.|=+. |-
T Consensus 7 EGPelviYtk~P---~~~~~~~dli~~lAk~lrKRIvvR~dps~l~~~e~A~~~I~~----ivP~ea~i~di~Fd~~tGE 79 (145)
T cd02410 7 EGPELVVYTKNP---ELFAEDGDLVKDLAKDLRKRIVIRPDPSVLKPPEEAIKIILE----IVPEEAGITDIYFDDDTGE 79 (145)
T ss_pred eCCeEEEEECCH---HHHhcccHHHHHHHHHHhceEEEcCChhhcCCHHHHHHHHHH----hCCCccCceeeEecCCCcE
Confidence 357888888765 56666667765 44555544443 333334555666666664 4577899999999997 89
Q ss_pred EEEEEeeCC
Q 043548 282 VFVQVVPLG 290 (385)
Q Consensus 282 ~viEi~P~g 290 (385)
++||.--+|
T Consensus 80 V~IeaeKPG 88 (145)
T cd02410 80 VIIEAEKPG 88 (145)
T ss_pred EEEEEcCCe
Confidence 999987555
No 100
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.14 E-value=1.6e+02 Score=28.80 Aligned_cols=87 Identities=20% Similarity=0.295 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhCCCCcCCCCCCCCCCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcC
Q 043548 181 VHFRGLLDEAYSHGRIRNRNNSPSTRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSS 260 (385)
Q Consensus 181 ~~F~~fl~~~~~l~~~~~~~~~~~~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~a 260 (385)
..|.+.|++ |++. -..-+++++.|.+..+ .-+..+|.+.|..|.+... ...++ .+.+.+|
T Consensus 144 ~gii~~L~~-~~i~---------l~Gk~vvViG~gg~vG------kpia~~L~~~gatVtv~~~-~t~~L---~~~~~~a 203 (283)
T PRK14192 144 AGIMRLLKA-YNIE---------LAGKHAVVVGRSAILG------KPMAMMLLNANATVTICHS-RTQNL---PELVKQA 203 (283)
T ss_pred HHHHHHHHH-cCCC---------CCCCEEEEECCcHHHH------HHHHHHHHhCCCEEEEEeC-CchhH---HHHhccC
Confidence 566665554 5542 1223789999988333 3456677788888888754 23333 3456899
Q ss_pred CEEEeechh-hhhhhhccCCCcEEEEEe
Q 043548 261 HAMVGVHGA-ALTHSLFLRPGSVFVQVV 287 (385)
Q Consensus 261 dvlVGvHGA-gLtn~lFl~pgs~viEi~ 287 (385)
|++|..-|- ++--.=+++||++|+.+.
T Consensus 204 DIvI~AtG~~~~v~~~~lk~gavViDvg 231 (283)
T PRK14192 204 DIIVGAVGKPELIKKDWIKQGAVVVDAG 231 (283)
T ss_pred CEEEEccCCCCcCCHHHcCCCCEEEEEE
Confidence 999998862 222233468999999874
No 101
>KOG4698 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.23 E-value=8.2 Score=40.21 Aligned_cols=97 Identities=14% Similarity=0.051 Sum_probs=66.5
Q ss_pred cccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeechhhhhhhhccCCCcEEEEEeeCCccccccccH
Q 043548 220 RVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHGAALTHSLFLRPGSVFVQVVPLGLEWVAEVCF 299 (385)
Q Consensus 220 R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHGAgLtn~lFl~pgs~viEi~P~g~~~~~~~~y 299 (385)
+-++|+.+ +...++.-|-++...+-..+.+.+-++.+++.. +-+|+++..--.|.+.+..+++-+|++.+.....+|
T Consensus 192 pL~it~~~-~~~n~ev~~li~~~~~ww~~kf~Dvv~~lSn~~--~v~~~~~~~ThcF~~~~vgL~~h~~y~v~~t~~~~~ 268 (475)
T KOG4698|consen 192 PLFITEAE-LRFNKEVQFLITETHSWWDMKFGDVVRQLSNYP--VVDFDAELRTHCFKEAIVGLVSHFPYAVNPTQPPPN 268 (475)
T ss_pred hhhcccch-hcccccEEEEEEEcchhhhhhHHHHHHhcCCCc--eEEecCCceEEEeeeeeeeeeecccccccCCcCCCc
Confidence 45555555 333333222222221213678999999999999 889999999999999999999999999777777778
Q ss_pred HHHH--hhcCCcEEEEEecccc
Q 043548 300 GTSA--KAMGLDYMEYKINAEE 319 (385)
Q Consensus 300 ~~~A--~~~gl~Y~~y~~~~~e 319 (385)
+..+ -.+.+-|.+|.....|
T Consensus 269 ~~~s~~~fr~~l~~a~~~~i~~ 290 (475)
T KOG4698|consen 269 GTLSMLDFRNLLDKALSPRIPE 290 (475)
T ss_pred cccccccHHHHHHHHhcccccc
Confidence 5433 4555666666554333
No 102
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=30.74 E-value=2e+02 Score=27.35 Aligned_cols=51 Identities=20% Similarity=0.270 Sum_probs=37.5
Q ss_pred HhcCCEEEeechhhhhhh--------hccCCCcEEEEEeeCCccccccccHHHHHhhcCCcEE
Q 043548 257 INSSHAMVGVHGAALTHS--------LFLRPGSVFVQVVPLGLEWVAEVCFGTSAKAMGLDYM 311 (385)
Q Consensus 257 ~~~advlVGvHGAgLtn~--------lFl~pgs~viEi~P~g~~~~~~~~y~~~A~~~gl~Y~ 311 (385)
..++|++|..-++|+... -.++++..|+++.-.- ..+.+...|+..|.++.
T Consensus 176 ~~~~DivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y~p----~~T~ll~~A~~~G~~~v 234 (270)
T TIGR00507 176 LHRVDLIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVYNP----GETPFLAEAKSLGTKTI 234 (270)
T ss_pred ccCccEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEeccCC----CCCHHHHHHHHCCCeee
Confidence 357999999998886431 2368899999996321 23468888999999876
No 103
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=30.63 E-value=1.3e+02 Score=28.86 Aligned_cols=53 Identities=19% Similarity=0.236 Sum_probs=39.9
Q ss_pred HHHhcCCEEEeechhhhhh--------hhccCCCcEEEEEeeCCccccccccHHHHHhhcCCcEE
Q 043548 255 ALINSSHAMVGVHGAALTH--------SLFLRPGSVFVQVVPLGLEWVAEVCFGTSAKAMGLDYM 311 (385)
Q Consensus 255 ~l~~~advlVGvHGAgLtn--------~lFl~pgs~viEi~P~g~~~~~~~~y~~~A~~~gl~Y~ 311 (385)
..+..+|++|..-.+|+.. .-++++++.|++++-.. ..+.|-..|+..|++..
T Consensus 181 ~~~~~~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P----~~T~ll~~A~~~G~~~~ 241 (278)
T PRK00258 181 EELADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGP----LPTPFLAWAKAQGARTI 241 (278)
T ss_pred hccccCCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCC----CCCHHHHHHHHCcCeec
Confidence 4457899999999999843 13468889999997422 35678899999998655
No 104
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=30.55 E-value=6.1e+02 Score=26.00 Aligned_cols=139 Identities=14% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCEEEEecCCCCCCHH------HHHHHHhcCCE-EEeechhhhhhhhc-------cCCCcEEEEEeeCC-
Q 043548 226 VEVKRVAEDTGFEVTVFEPTPKTSLR------QAYALINSSHA-MVGVHGAALTHSLF-------LRPGSVFVQVVPLG- 290 (385)
Q Consensus 226 ~ev~~~l~~~gf~v~~~~~~~~~s~~------eq~~l~~~adv-lVGvHGAgLtn~lF-------l~pgs~viEi~P~g- 290 (385)
.++++.++.+|++|...++....... +--+++..||+ .+-+-...=|.-++ |+||+.+|=+-=-+
T Consensus 164 ~~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~ 243 (409)
T PRK11790 164 TQLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTV 243 (409)
T ss_pred HHHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcc
Q ss_pred ccccccccHHHHHhhcCCcEEEEEecccccchhhhcCCCCccccCCccc---cCCCcchhhhhhhhcCCceEEchHhHHH
Q 043548 291 LEWVAEVCFGTSAKAMGLDYMEYKINAEESSLIEKYNKNDTVIKDPVAF---RGKSWSDAAMNIYLKEQNVKLDLFRFRE 367 (385)
Q Consensus 291 ~~~~~~~~y~~~A~~~gl~Y~~y~~~~~essl~~~y~~d~~v~~dP~~~---~~~gw~~~~~~~yl~~Qdv~ldi~rF~~ 367 (385)
+ ....-...-+.-.+......+-..|--..+ .+.+||...-|..+ |-.|+ -.+....
T Consensus 244 v---de~aL~~aL~~g~i~gaalDVf~~EP~~~~-~~~~~pL~~~~nvilTPHia~~----------------t~ea~~~ 303 (409)
T PRK11790 244 V---DIDALADALKSGHLAGAAIDVFPVEPKSNG-DPFESPLRGLDNVILTPHIGGS----------------TQEAQEN 303 (409)
T ss_pred c---CHHHHHHHHHcCCceEEEEcCCCCCCCCcc-ccccchhhcCCCEEECCcCCCC----------------HHHHHHH
Q ss_pred HHHHHHHHHHhhhhcCC
Q 043548 368 YLKKVYKKAKRFMDKGE 384 (385)
Q Consensus 368 ~L~~a~~~~~~~~~~~~ 384 (385)
....+.+.+.+|+..++
T Consensus 304 ~~~~~~~nl~~~~~~~~ 320 (409)
T PRK11790 304 IGLEVAGKLVKYSDNGS 320 (409)
T ss_pred HHHHHHHHHHHHHcCCC
No 105
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=30.19 E-value=1.2e+02 Score=26.30 Aligned_cols=44 Identities=16% Similarity=0.225 Sum_probs=28.9
Q ss_pred HHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeechhh
Q 043548 226 VEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHGAA 270 (385)
Q Consensus 226 ~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHGAg 270 (385)
+++.++++++|+++..++.. +.+-.+..+.+.+||+|.=.=|.-
T Consensus 3 ~~~~~~f~~~g~~v~~l~~~-~~~~~~~~~~i~~ad~I~~~GG~~ 46 (154)
T PF03575_consen 3 EKFRKAFRKLGFEVDQLDLS-DRNDADILEAIREADAIFLGGGDT 46 (154)
T ss_dssp HHHHHHHHHCT-EEEECCCT-SCGHHHHHHHHHHSSEEEE--S-H
T ss_pred HHHHHHHHHCCCEEEEEecc-CCChHHHHHHHHhCCEEEECCCCH
Confidence 45677888888888777653 446668888888888877655543
No 106
>PRK11914 diacylglycerol kinase; Reviewed
Probab=29.82 E-value=1.4e+02 Score=28.99 Aligned_cols=82 Identities=17% Similarity=0.204 Sum_probs=49.7
Q ss_pred EEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHH--hcCCEEEeechhhhhhhhc---cCCCcEE
Q 043548 209 LMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALI--NSSHAMVGVHGAALTHSLF---LRPGSVF 283 (385)
Q Consensus 209 v~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~--~~advlVGvHGAgLtn~lF---l~pgs~v 283 (385)
++|+.-....++.-...+++++.|++.|+++.+......-...++++.. ..+|+||.+=|=|-.|-+= +..+ +-
T Consensus 12 ~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GGDGTi~evv~~l~~~~-~~ 90 (306)
T PRK11914 12 TVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGDGVISNALQVLAGTD-IP 90 (306)
T ss_pred EEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECCchHHHHHhHHhccCC-Cc
Confidence 3444433332344445678889999999987654432223455555433 4579999999988655432 2333 44
Q ss_pred EEEeeCCc
Q 043548 284 VQVVPLGL 291 (385)
Q Consensus 284 iEi~P~g~ 291 (385)
+=++|.|.
T Consensus 91 lgiiP~GT 98 (306)
T PRK11914 91 LGIIPAGT 98 (306)
T ss_pred EEEEeCCC
Confidence 77899983
No 107
>PRK09479 glpX fructose 1,6-bisphosphatase II; Reviewed
Probab=29.58 E-value=1.3e+02 Score=29.89 Aligned_cols=54 Identities=17% Similarity=0.279 Sum_probs=44.5
Q ss_pred CCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHH---hcCCEEEeechh
Q 043548 205 TRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALI---NSSHAMVGVHGA 269 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~---~~advlVGvHGA 269 (385)
....+++++|.+. +++++.+++.|-.|..+. +-++.--+... +..|+++|.-||
T Consensus 157 ~dltV~vLdRpRH--------~~lI~eiR~~Gari~Li~---DGDVa~ai~~~~~~s~vD~~~GiGGa 213 (319)
T PRK09479 157 SDLTVVVLDRPRH--------EELIAEIREAGARVKLIS---DGDVAGAIATAFPDTGVDILMGIGGA 213 (319)
T ss_pred hHeEEEEEcCchH--------HHHHHHHHHcCCeEEEec---cccHHHHHHHhcCCCCeeEEEEcCcC
Confidence 4467889999875 999999999999999885 56777666666 567999999997
No 108
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=29.30 E-value=1.3e+02 Score=26.78 Aligned_cols=39 Identities=23% Similarity=0.357 Sum_probs=28.4
Q ss_pred HHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEee
Q 043548 225 QVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGV 266 (385)
Q Consensus 225 e~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGv 266 (385)
..++.+.+++.|++|.++. ..|+..++-.=..-+.+|||
T Consensus 75 Ig~l~~lae~~g~~v~i~~---Ggt~ar~~ik~~~p~~iigV 113 (158)
T PF01976_consen 75 IGDLKKLAEKYGYKVYIAT---GGTLARKIIKEYRPKAIIGV 113 (158)
T ss_pred hhHHHHHHHHcCCEEEEEc---ChHHHHHHHHHhCCCEEEEE
Confidence 5789999999999998874 45666665555555666554
No 109
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=27.27 E-value=87 Score=29.51 Aligned_cols=56 Identities=16% Similarity=0.302 Sum_probs=34.9
Q ss_pred ccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHh-----cCC---EEEeechhhhhhhhccCCC
Q 043548 223 LNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALIN-----SSH---AMVGVHGAALTHSLFLRPG 280 (385)
Q Consensus 223 ~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~-----~ad---vlVGvHGAgLtn~lFl~pg 280 (385)
...+.|.+.++++||+|++........+.+.++-+. .+| +++.-||-. |.++.-.+
T Consensus 32 ~D~~~l~~~f~~lgF~V~~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~~~sHG~~--~~l~~~D~ 95 (243)
T cd00032 32 VDAENLTKLFESLGYEVEVKNNLTAEEILEELKEFASPDHSDSDSFVCVILSHGEE--GGIYGTDG 95 (243)
T ss_pred HHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHHHhccCCCCCeeEEEECCCCCC--CEEEEecC
Confidence 345677889999999999875333333444454444 344 356678865 66665543
No 110
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=26.49 E-value=90 Score=24.29 Aligned_cols=65 Identities=17% Similarity=0.239 Sum_probs=40.7
Q ss_pred hccCCC-cEEEEEeeCCccccccccHHHHHhhcCCcEEEEEecccccchhhhcCCCCccccCCccccCCCcchhhhhhhh
Q 043548 275 LFLRPG-SVFVQVVPLGLEWVAEVCFGTSAKAMGLDYMEYKINAEESSLIEKYNKNDTVIKDPVAFRGKSWSDAAMNIYL 353 (385)
Q Consensus 275 lFl~pg-s~viEi~P~g~~~~~~~~y~~~A~~~gl~Y~~y~~~~~essl~~~y~~d~~v~~dP~~~~~~gw~~~~~~~yl 353 (385)
+|+|.| ++++++.|--. -...-..+.+..|+.|..+.+-. .|+++|+-.|-++ .-|
T Consensus 4 V~LPdg~~T~V~vrpG~t---i~d~L~kllekRgl~~~~~~vf~--------~g~~k~l~~~qD~------------~~L 60 (73)
T cd01817 4 VILPDGSTTVVPTRPGES---IRDLLSGLCEKRGINYAAVDLFL--------VGGDKPLVLDQDS------------SVL 60 (73)
T ss_pred EECCCCCeEEEEecCCCC---HHHHHHHHHHHcCCChhHEEEEE--------ecCCcccccCCcc------------cee
Confidence 589998 68999988421 23445566778899988877632 1555554333221 335
Q ss_pred cCCceEEch
Q 043548 354 KEQNVKLDL 362 (385)
Q Consensus 354 ~~Qdv~ldi 362 (385)
.+|.++|+.
T Consensus 61 ~~~El~vE~ 69 (73)
T cd01817 61 AGQEVRLEK 69 (73)
T ss_pred eccEEEEEE
Confidence 667777653
No 111
>PRK10431 N-acetylmuramoyl-l-alanine amidase II; Provisional
Probab=26.36 E-value=1.3e+02 Score=31.37 Aligned_cols=69 Identities=13% Similarity=0.158 Sum_probs=47.0
Q ss_pred CCCeEEEEEccCC------CCcccccHHHH--------HHHHHHC-CCEEEEecC-CCCCCHHHHHHHHh--cCCEEEee
Q 043548 205 TRPRLMLMSRRGG------LGRVILNQVEV--------KRVAEDT-GFEVTVFEP-TPKTSLRQAYALIN--SSHAMVGV 266 (385)
Q Consensus 205 ~~prv~~isR~~~------~~R~i~Ne~ev--------~~~l~~~-gf~v~~~~~-~~~~s~~eq~~l~~--~advlVGv 266 (385)
.++.+++|+=... .+..=+-|.++ .+.|++. |++|+.... +...++.|-+++.+ +||++|++
T Consensus 189 ~~~~vIvIDpGHGG~DpGA~g~~G~~EKdv~L~iA~~L~~~L~~~~g~~VvlTR~~D~~v~L~eR~~iAn~~~ADLFISI 268 (445)
T PRK10431 189 GDKVIIAIDAGHGGQDPGAIGPGGTREKNVTIAIARKLRTLLNDDPMFKGVLTRDGDYFISVMGRSDVARKQNANFLVSI 268 (445)
T ss_pred CCCeEEEEeCCCCCCCCCCcCCCCccHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHHcCCCEEEEE
Confidence 4566788887653 12222455544 3445555 799876543 34678999999887 89999999
Q ss_pred chhhhhh
Q 043548 267 HGAALTH 273 (385)
Q Consensus 267 HGAgLtn 273 (385)
|--+..+
T Consensus 269 HaNa~~~ 275 (445)
T PRK10431 269 HADAAPN 275 (445)
T ss_pred ccCCCCC
Confidence 9888765
No 112
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=26.09 E-value=1.6e+02 Score=24.99 Aligned_cols=54 Identities=15% Similarity=0.333 Sum_probs=34.2
Q ss_pred eEEEEEccCCCCcccccHHHHH----HHHHHCCCEEEEecCCCC----------------CCHHHHHHHHhcCCEEE
Q 043548 208 RLMLMSRRGGLGRVILNQVEVK----RVAEDTGFEVTVFEPTPK----------------TSLRQAYALINSSHAMV 264 (385)
Q Consensus 208 rv~~isR~~~~~R~i~Ne~ev~----~~l~~~gf~v~~~~~~~~----------------~s~~eq~~l~~~advlV 264 (385)
|+++|.=. .|.--|-..++ +.+++.|.++.+++..+. -.+.+-++.+.+||.+|
T Consensus 2 kilii~gS---~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI 75 (152)
T PF03358_consen 2 KILIINGS---PRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGII 75 (152)
T ss_dssp EEEEEESS---SSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEE
T ss_pred EEEEEECc---CCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEE
Confidence 55666522 24445555555 445556899988876532 13456688999999877
No 113
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=26.05 E-value=1.5e+02 Score=29.64 Aligned_cols=43 Identities=14% Similarity=0.208 Sum_probs=29.9
Q ss_pred HHHHHHHHHCCCEEEEec-CCCCCC---HHHHHHHHh-----cCCEEEeech
Q 043548 226 VEVKRVAEDTGFEVTVFE-PTPKTS---LRQAYALIN-----SSHAMVGVHG 268 (385)
Q Consensus 226 ~ev~~~l~~~gf~v~~~~-~~~~~s---~~eq~~l~~-----~advlVGvHG 268 (385)
+.+.+.|++.|.++.+++ ...+-+ +.+-+++++ ++|++||+=|
T Consensus 39 ~~v~~~L~~~g~~~~~f~~v~~nPt~~~v~~~~~~~~~~~~~~~D~IIaiGG 90 (347)
T cd08184 39 KDLISRLPVESEDMIIWVDATEEPKTDQIDALTAQVKSFDGKLPCAIVGIGG 90 (347)
T ss_pred hHHHHHHHhcCCcEEEEcCCCCCcCHHHHHHHHHHHHhhCCCCCCEEEEeCC
Confidence 788899999888776653 111222 445556665 7899999998
No 114
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=25.84 E-value=1.7e+02 Score=30.16 Aligned_cols=97 Identities=7% Similarity=-0.013 Sum_probs=63.1
Q ss_pred CCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeec--hh-hhhhhhccCCCcE
Q 043548 206 RPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVH--GA-ALTHSLFLRPGSV 282 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvH--GA-gLtn~lFl~pgs~ 282 (385)
+..|-+|.= . ..--|..|+.+.|++.|.++...-+ ...+++ +++-+.+|.+-|.+. ++ .++..|==+=|.-
T Consensus 172 ~~~VNiiG~--~--~~~~d~~el~~lL~~~Gi~v~~~~~-~~~t~e-ei~~~~~A~lniv~~~~~~~~~a~~Le~~fGiP 245 (421)
T cd01976 172 PYDVNIIGD--Y--NIGGDAWASRILLEEMGLRVVAQWS-GDGTLN-EMENAHKAKLNLIHCYRSMNYIARMMEEKYGIP 245 (421)
T ss_pred CCeEEEEec--C--CCCccHHHHHHHHHHcCCeEEEEeC-CCCCHH-HHHhcccCCEEEEECcHHHHHHHHHHHHHhCCc
Confidence 456666652 1 2235778999999999999975323 245555 455677777766653 33 2345453345677
Q ss_pred EEEEeeCCccccccccHHHHHhhcCCc
Q 043548 283 FVQVVPLGLEWVAEVCFGTSAKAMGLD 309 (385)
Q Consensus 283 viEi~P~g~~~~~~~~y~~~A~~~gl~ 309 (385)
.++..|+|++ ....++..+|+..|..
T Consensus 246 ~~~~~p~Gi~-~t~~~l~~ia~~~g~~ 271 (421)
T cd01976 246 WMEYNFFGPT-KIAESLRKIAAYFDDE 271 (421)
T ss_pred EEecccCCHH-HHHHHHHHHHHHhCch
Confidence 7777788864 2457889999998874
No 115
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=25.74 E-value=1.2e+02 Score=29.14 Aligned_cols=40 Identities=10% Similarity=0.121 Sum_probs=26.1
Q ss_pred HHHHHHHHCCCEEEEecCCCCCCHHHH---HHHHhcCCEEEeech
Q 043548 227 EVKRVAEDTGFEVTVFEPTPKTSLRQA---YALINSSHAMVGVHG 268 (385)
Q Consensus 227 ev~~~l~~~gf~v~~~~~~~~~s~~eq---~~l~~~advlVGvHG 268 (385)
+.++.|++.|.+++++-. ...++++ ++.+...|++||-|-
T Consensus 173 ~~v~~lr~~~~D~II~l~--H~G~~~d~~la~~~~giD~IiggH~ 215 (281)
T cd07409 173 KEADKLKAQGVNKIIALS--HSGYEVDKEIARKVPGVDVIVGGHS 215 (281)
T ss_pred HHHHHHHhcCCCEEEEEe--ccCchhHHHHHHcCCCCcEEEeCCc
Confidence 445667767888766532 4555544 344466999999994
No 116
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=25.64 E-value=1e+02 Score=26.82 Aligned_cols=57 Identities=19% Similarity=0.291 Sum_probs=37.0
Q ss_pred cccHHHHHHHHHHCCCEEEEec--CCCCCCHHHHHH-HHh--cCCEEEeechhhhhhhhccC
Q 043548 222 ILNQVEVKRVAEDTGFEVTVFE--PTPKTSLRQAYA-LIN--SSHAMVGVHGAALTHSLFLR 278 (385)
Q Consensus 222 i~Ne~ev~~~l~~~gf~v~~~~--~~~~~s~~eq~~-l~~--~advlVGvHGAgLtn~lFl~ 278 (385)
=.|-.-+.+.+++.|+++.... +++.-.+.+.++ ..+ .+|++|..=|+|.+--=|.+
T Consensus 19 d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~g~~D~t~ 80 (152)
T cd00886 19 DRSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTGLAPRDVTP 80 (152)
T ss_pred cchHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCcCcH
Confidence 3455667788999999876433 332334555555 334 69999999888876554433
No 117
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=25.62 E-value=2.1e+02 Score=28.92 Aligned_cols=59 Identities=12% Similarity=0.263 Sum_probs=38.2
Q ss_pred eEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCC-C---CCHHHHHHHH--hcCCEEEeech
Q 043548 208 RLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTP-K---TSLRQAYALI--NSSHAMVGVHG 268 (385)
Q Consensus 208 rv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~-~---~s~~eq~~l~--~~advlVGvHG 268 (385)
|++++.-+.- ++.--.+++.+.|++.|.++.+++.-+ + ..+.+-++++ .++|++||+=|
T Consensus 33 ~~livt~~~~--~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiGG 97 (383)
T PRK09860 33 RTLIVTDNML--TKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGG 97 (383)
T ss_pred EEEEEcCcch--hhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 6666654332 444345789999999998877664211 1 2244555555 57899999999
No 118
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=25.60 E-value=2.2e+02 Score=28.48 Aligned_cols=59 Identities=17% Similarity=0.350 Sum_probs=37.7
Q ss_pred eEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCC-CCCC---HHHHHHHH--hcCCEEEeech
Q 043548 208 RLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPT-PKTS---LRQAYALI--NSSHAMVGVHG 268 (385)
Q Consensus 208 rv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~-~~~s---~~eq~~l~--~~advlVGvHG 268 (385)
|++++.-+.. ++.-=.++|.+.|++.|.++.+++.- .+-+ +.+-++.+ .++|++||+=|
T Consensus 26 ~~liv~~~~~--~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGG 90 (370)
T cd08192 26 RPLIVTDPGL--AALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAFGG 90 (370)
T ss_pred eEEEEcCcch--hhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 6666665443 34333568999999999988765421 1222 44444444 57899999998
No 119
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=25.60 E-value=2.1e+02 Score=29.36 Aligned_cols=61 Identities=21% Similarity=0.278 Sum_probs=39.3
Q ss_pred eEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCC-CCC---CHHHHHHHH--hcCCEEEeechhh
Q 043548 208 RLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPT-PKT---SLRQAYALI--NSSHAMVGVHGAA 270 (385)
Q Consensus 208 rv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~-~~~---s~~eq~~l~--~~advlVGvHGAg 270 (385)
|++++.-+.. ++.--.+++.+.|++.|.++.+++.- .+- .+.+-++++ .++|+|||+=|..
T Consensus 25 ~vlivt~~~~--~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS 91 (414)
T cd08190 25 RVCLVTDPNL--AQLPPVKVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVAVGGGS 91 (414)
T ss_pred eEEEEECcch--hhcchHHHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 6666765444 44444688999999999888776421 122 244445555 4689999997753
No 120
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=25.45 E-value=1.5e+02 Score=30.31 Aligned_cols=75 Identities=12% Similarity=0.193 Sum_probs=46.4
Q ss_pred CCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCC-----CCCHHHHHHHHhcCCEEE--eechh-------hh
Q 043548 206 RPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTP-----KTSLRQAYALINSSHAMV--GVHGA-------AL 271 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~-----~~s~~eq~~l~~~advlV--GvHGA-------gL 271 (385)
.-++.||.=.+- =..+.+.|+.+|++|...++.. ...+.+.-+++.+|||++ .+.-. +|
T Consensus 116 gktvGIIG~G~I-------G~~vA~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~l 188 (378)
T PRK15438 116 DRTVGIVGVGNV-------GRRLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHL 188 (378)
T ss_pred CCEEEEECcCHH-------HHHHHHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccc
Confidence 345666654332 1467888999999999887531 112334456788999998 33211 22
Q ss_pred ---hhhhccCCCcEEEEEe
Q 043548 272 ---THSLFLRPGSVFVQVV 287 (385)
Q Consensus 272 ---tn~lFl~pgs~viEi~ 287 (385)
..+-=|+||+.+|-.-
T Consensus 189 i~~~~l~~mk~gailIN~a 207 (378)
T PRK15438 189 ADEKLIRSLKPGAILINAC 207 (378)
T ss_pred cCHHHHhcCCCCcEEEECC
Confidence 2233469999998654
No 121
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=25.44 E-value=1.5e+02 Score=30.62 Aligned_cols=97 Identities=11% Similarity=0.145 Sum_probs=62.7
Q ss_pred CCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeechh-h--hhhhhccCCCcE
Q 043548 206 RPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHGA-A--LTHSLFLRPGSV 282 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHGA-g--Ltn~lFl~pgs~ 282 (385)
+.+|-+|.= . ..--|.+|+.+.|++.|++++..-+ ...++ |+++-+.+|..-|.+.+. + ++..|==+=|.-
T Consensus 191 ~~~VNiig~--~--~~~~d~~el~~lL~~~Gl~v~~~~~-~~~t~-eei~~~~~A~lniv~~~~~~~~~A~~L~er~GiP 264 (443)
T TIGR01862 191 EYDVNIIGE--Y--NIGGDAWVMRIYLEEMGIQVVATFT-GDGTY-DEIRLMHKAKLNLVHCARSANYIANELEERYGIP 264 (443)
T ss_pred CCeEEEEcc--C--cCcccHHHHHHHHHHcCCeEEEEEC-CCCCH-HHHHhcccCCEEEEEChHHHHHHHHHHHHHhCCC
Confidence 456666652 1 2245788999999999999975323 23445 555667777776655442 2 344443344666
Q ss_pred EEEEeeCCccccccccHHHHHhhcCCc
Q 043548 283 FVQVVPLGLEWVAEVCFGTSAKAMGLD 309 (385)
Q Consensus 283 viEi~P~g~~~~~~~~y~~~A~~~gl~ 309 (385)
.+.+-|.|++. ...++..+|+..|+.
T Consensus 265 ~~~~~p~G~~~-t~~~l~~la~~~gi~ 290 (443)
T TIGR01862 265 WMKIDFFGFTY-TAESLRAIAAFFGIE 290 (443)
T ss_pred eEecccCCHHH-HHHHHHHHHHHhCCc
Confidence 77777888643 357889999998853
No 122
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=25.38 E-value=99 Score=27.68 Aligned_cols=58 Identities=17% Similarity=0.163 Sum_probs=39.7
Q ss_pred ccccHHHHHHHHHHCCCEEEEe--cCCCCCCHHHHHH-HHhcCCEEEeechhhhhhhhccC
Q 043548 221 VILNQVEVKRVAEDTGFEVTVF--EPTPKTSLRQAYA-LINSSHAMVGVHGAALTHSLFLR 278 (385)
Q Consensus 221 ~i~Ne~ev~~~l~~~gf~v~~~--~~~~~~s~~eq~~-l~~~advlVGvHGAgLtn~lFl~ 278 (385)
.=.|..-+.+.|++.|+++... -+++...+.+.++ +...+|++|..=|.|.|.-=+.+
T Consensus 17 ~d~n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G~t~~D~t~ 77 (170)
T cd00885 17 VDTNAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITTGGLGPTHDDLTR 77 (170)
T ss_pred EEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCCCCCCCChHH
Confidence 3446667888999999987532 1333445667765 44679999999999887653333
No 123
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=24.58 E-value=2.5e+02 Score=28.58 Aligned_cols=60 Identities=15% Similarity=0.210 Sum_probs=37.1
Q ss_pred eEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEec-CCCCCC---HHHHHHHH--hcCCEEEeechh
Q 043548 208 RLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFE-PTPKTS---LRQAYALI--NSSHAMVGVHGA 269 (385)
Q Consensus 208 rv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~-~~~~~s---~~eq~~l~--~~advlVGvHGA 269 (385)
+++++..+.- ++.-=.+++.+.|++.|.++.+++ ...+-+ +.+-++++ .++|++||+=|.
T Consensus 51 ~~lvv~~~~~--~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~IiavGGG 116 (395)
T PRK15454 51 HLFVMADSFL--HQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFGGG 116 (395)
T ss_pred EEEEEcCcch--hhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEEeCCh
Confidence 5666653322 222224779999999999887663 111222 44555555 589999999874
No 124
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=24.50 E-value=1.6e+02 Score=30.77 Aligned_cols=97 Identities=12% Similarity=0.100 Sum_probs=63.5
Q ss_pred CCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeec---hhhhhhhhccCCCcE
Q 043548 206 RPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVH---GAALTHSLFLRPGSV 282 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvH---GAgLtn~lFl~pgs~ 282 (385)
+..|-+|. .. -.--|.+|+.+.|++.|++++..-+ ...+++| ++-+.+|+.-|.+. |..++..|=-+=|.-
T Consensus 199 ~~~VNiiG--~~--~~~gd~~el~~lL~~~Gl~v~~~~~-g~~s~~e-i~~~~~A~lniv~~~~~~~~~A~~Le~~~GiP 272 (457)
T TIGR01284 199 EYDVNLIG--EY--NIQGDLWVLKKYFERMGIQVLSTFT-GNGCYDE-LRWMHRAKLNVVRCARSANYIANELEERYGIP 272 (457)
T ss_pred CCeEEEEc--cC--CchhhHHHHHHHHHHcCCeEEEEEC-CCCCHHH-HHhccccCEEEEEChHHHHHHHHHHHHHhCCC
Confidence 34566664 22 2224668899999999999974323 2455554 55677777744433 444666665455777
Q ss_pred EEEEeeCCccccccccHHHHHhhcCCc
Q 043548 283 FVQVVPLGLEWVAEVCFGTSAKAMGLD 309 (385)
Q Consensus 283 viEi~P~g~~~~~~~~y~~~A~~~gl~ 309 (385)
.+.+-|+|++. ...+...+|+..|+.
T Consensus 273 ~~~~~~~G~~~-T~~~l~~ia~~~g~~ 298 (457)
T TIGR01284 273 RLDIDFFGFEY-CAKNLRKIGEFFGIE 298 (457)
T ss_pred eEecccCCHHH-HHHHHHHHHHHhCCc
Confidence 78777888643 357889999999975
No 125
>TIGR00627 tfb4 transcription factor tfb4. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.13 E-value=2e+02 Score=28.06 Aligned_cols=73 Identities=12% Similarity=0.098 Sum_probs=55.3
Q ss_pred CCCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCC--CCCCHHHHHHHHhcCCEEEeechhhhhhhhc
Q 043548 204 STRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPT--PKTSLRQAYALINSSHAMVGVHGAALTHSLF 276 (385)
Q Consensus 204 ~~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~--~~~s~~eq~~l~~~advlVGvHGAgLtn~lF 276 (385)
.-++|+++|+-.+....+-.+.-..+.++++.+..+-++.-. .+..+-+|+.-.-+-..++.....||...|.
T Consensus 144 ~~~~RIlii~~s~~~~~qYi~~mn~Ifaaqk~~I~Idv~~L~~e~~~~~lqQa~~~TgG~Y~~~~~~~~L~q~L~ 218 (279)
T TIGR00627 144 KLKSRILVISITPDMALQYIPLMNCIFSAQKQNIPIDVVSIGGDFTSGFLQQAADITGGSYLHVKKPQGLLQYLM 218 (279)
T ss_pred CCcceEEEEECCCCchHHHHHHHHHHHHHHHcCceEEEEEeCCccccHHHHHHHHHhCCEEeccCCHhHHHHHHH
Confidence 458999999987765677777778889999987755433333 2489999999888877787788888876653
No 126
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=23.97 E-value=1.5e+02 Score=25.58 Aligned_cols=74 Identities=20% Similarity=0.308 Sum_probs=41.0
Q ss_pred HHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeechhhhhhhhccCCCcEEEEEeeCCccccccccHHHHHh-
Q 043548 226 VEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHGAALTHSLFLRPGSVFVQVVPLGLEWVAEVCFGTSAK- 304 (385)
Q Consensus 226 ~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHGAgLtn~lFl~pgs~viEi~P~g~~~~~~~~y~~~A~- 304 (385)
..+++.++..||+|+++++.++ .+..++-+....-..+...+-+++++.| |+-.+. ..++.-+-.
T Consensus 11 ~al~~la~~lg~~v~v~d~r~e--------~~~~~~~~~~~~~~~~~~~~~~~~~t~V--v~th~h----~~D~~~L~~~ 76 (136)
T PF13478_consen 11 RALARLAALLGFRVTVVDPRPE--------RFPEADEVICIPPDDILEDLEIDPNTAV--VMTHDH----ELDAEALEAA 76 (136)
T ss_dssp HHHHHHHHHCTEEEEEEES-CC--------C-TTSSEEECSHHHHHHHHC-S-TT-EE--E--S-C----CCHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEEcCCcc--------ccCCCCccEecChHHHHhccCCCCCeEE--EEcCCc----hhHHHHHHHH
Confidence 5788899999999999998633 2346666555554444445578888876 555543 233344433
Q ss_pred -hcCCcEEEE
Q 043548 305 -AMGLDYMEY 313 (385)
Q Consensus 305 -~~gl~Y~~y 313 (385)
..+..|+.-
T Consensus 77 l~~~~~YiG~ 86 (136)
T PF13478_consen 77 LASPARYIGL 86 (136)
T ss_dssp TTSS-SEEEE
T ss_pred HcCCCCEEEe
Confidence 336777763
No 127
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=23.73 E-value=2.3e+02 Score=28.51 Aligned_cols=59 Identities=8% Similarity=0.261 Sum_probs=38.4
Q ss_pred eEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCC-CCC---HHHHHHHH--hcCCEEEeech
Q 043548 208 RLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTP-KTS---LRQAYALI--NSSHAMVGVHG 268 (385)
Q Consensus 208 rv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~-~~s---~~eq~~l~--~~advlVGvHG 268 (385)
|++++.-+.. ++.--.+++.+.|++.|.++.+++..+ +-+ +.+.++++ .++|+|||+=|
T Consensus 31 r~lvvt~~~~--~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGG 95 (379)
T TIGR02638 31 KALVVTDKDL--IKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGG 95 (379)
T ss_pred EEEEEcCcch--hhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 6666765443 443345788999999999887764221 222 33455554 47899999998
No 128
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=23.63 E-value=3.4e+02 Score=24.70 Aligned_cols=60 Identities=10% Similarity=0.120 Sum_probs=44.0
Q ss_pred CCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCE-EEeech
Q 043548 205 TRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHA-MVGVHG 268 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~adv-lVGvHG 268 (385)
.++++++..=.+- .+=+-..-+..+++..||+|+.+.. +.|.++.++.+...+. +||+-.
T Consensus 83 ~~~~vv~~t~~gd--~H~lG~~~v~~~l~~~G~~vi~LG~--~vp~e~~v~~~~~~~pd~v~lS~ 143 (197)
T TIGR02370 83 VLGKVVCGVAEGD--VHDIGKNIVVTMLRANGFDVIDLGR--DVPIDTVVEKVKKEKPLMLTGSA 143 (197)
T ss_pred CCCeEEEEeCCCc--hhHHHHHHHHHHHHhCCcEEEECCC--CCCHHHHHHHHHHcCCCEEEEcc
Confidence 4678877776655 5555556667788899999998754 7999999999977665 555543
No 129
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=23.58 E-value=3.2e+02 Score=26.83 Aligned_cols=83 Identities=20% Similarity=0.372 Sum_probs=49.2
Q ss_pred HHHHHHCCCEEEEecCCCCCC--HH---------HHHHHHhcCCEEEeechh--hhhhhhc--------cCCCcEEEEEe
Q 043548 229 KRVAEDTGFEVTVFEPTPKTS--LR---------QAYALINSSHAMVGVHGA--ALTHSLF--------LRPGSVFVQVV 287 (385)
Q Consensus 229 ~~~l~~~gf~v~~~~~~~~~s--~~---------eq~~l~~~advlVGvHGA--gLtn~lF--------l~pgs~viEi~ 287 (385)
.+.|.+.|++|.+.+...... .. .-.+....+||+|.+=+. ..-..+| ++||+++|..-
T Consensus 16 A~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmS 95 (286)
T COG2084 16 AANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMS 95 (286)
T ss_pred HHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEECC
Confidence 445566677777665331111 01 113578899999987543 3333333 57899999876
Q ss_pred eCCccccccccHHHHHhhcCCcEEEE
Q 043548 288 PLGLEWVAEVCFGTSAKAMGLDYMEY 313 (385)
Q Consensus 288 P~g~~~~~~~~y~~~A~~~gl~Y~~y 313 (385)
... .....-....++..|++|+.=
T Consensus 96 Tis--p~~a~~~a~~~~~~G~~~lDA 119 (286)
T COG2084 96 TIS--PETARELAAALAAKGLEFLDA 119 (286)
T ss_pred CCC--HHHHHHHHHHHHhcCCcEEec
Confidence 443 112334555667889999863
No 130
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=23.31 E-value=1.7e+02 Score=29.83 Aligned_cols=74 Identities=16% Similarity=0.218 Sum_probs=45.2
Q ss_pred CeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCC-----CCHHHHHHHHhcCCEEEee--------c-hhhh-
Q 043548 207 PRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPK-----TSLRQAYALINSSHAMVGV--------H-GAAL- 271 (385)
Q Consensus 207 prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~-----~s~~eq~~l~~~advlVGv--------H-GAgL- 271 (385)
-++.||.-.+- -..+.+.++.+|++|...++... ..+..--+++..||+++-- | --+|
T Consensus 117 ktvGIIG~G~I-------G~~va~~l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li 189 (381)
T PRK00257 117 RTYGVVGAGHV-------GGRLVRVLRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLL 189 (381)
T ss_pred CEEEEECCCHH-------HHHHHHHHHHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCCCccccccccC
Confidence 45666665432 25678889999999998875311 1223334567899998721 1 1122
Q ss_pred --hhhhccCCCcEEEEEe
Q 043548 272 --THSLFLRPGSVFVQVV 287 (385)
Q Consensus 272 --tn~lFl~pgs~viEi~ 287 (385)
..+--|+||+.+|-.-
T Consensus 190 ~~~~l~~mk~gailIN~a 207 (381)
T PRK00257 190 DEAFLASLRPGAWLINAS 207 (381)
T ss_pred CHHHHhcCCCCeEEEECC
Confidence 2334479999998654
No 131
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=23.07 E-value=5.5e+02 Score=24.32 Aligned_cols=59 Identities=14% Similarity=0.273 Sum_probs=45.1
Q ss_pred HHHHHHHHC-CCEEEEecCCC-----------CCCHHHHHHHHhcCCEEEeechhh-hhhhhccCCCcEEEE
Q 043548 227 EVKRVAEDT-GFEVTVFEPTP-----------KTSLRQAYALINSSHAMVGVHGAA-LTHSLFLRPGSVFVQ 285 (385)
Q Consensus 227 ev~~~l~~~-gf~v~~~~~~~-----------~~s~~eq~~l~~~advlVGvHGAg-Ltn~lFl~pgs~viE 285 (385)
++++++++. +..++++.+.. ..+-.+..++|..||++||.=|-+ +..++.+..-+.+|-
T Consensus 206 ~~~~~l~~~~~~~~~v~g~~~~~~~~~ni~~~~~~~~~~~~~m~~ad~vIs~~G~~t~~Ea~~~g~P~l~ip 277 (318)
T PF13528_consen 206 DLIEALKALPDYQFIVFGPNAADPRPGNIHVRPFSTPDFAELMAAADLVISKGGYTTISEALALGKPALVIP 277 (318)
T ss_pred HHHHHHHhCCCCeEEEEcCCcccccCCCEEEeecChHHHHHHHHhCCEEEECCCHHHHHHHHHcCCCEEEEe
Confidence 888888887 47777664332 012367889999999999999999 889999987776663
No 132
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=22.79 E-value=2.7e+02 Score=29.48 Aligned_cols=102 Identities=19% Similarity=0.278 Sum_probs=65.6
Q ss_pred CCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhcc--CCCc
Q 043548 205 TRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHG-AALTHSLFL--RPGS 281 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHG-AgLtn~lFl--~pgs 281 (385)
.++.+-||.=..-..+.--|..|+.+.|++.|.+|..+-+. ..+++| ++-+.+|++=|.+.+ .|+.-.-+| +=|.
T Consensus 157 ~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v~p~-g~s~~d-l~~l~~A~~NIv~~~~~g~~~A~~Le~~fGi 234 (511)
T TIGR01278 157 EKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVVAPW-GASIAD-LARLPAAWLNICPYREIGLMAAEYLKEKFGQ 234 (511)
T ss_pred CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC-CCCHHH-HHhcccCcEEEEechHHHHHHHHHHHHHhCC
Confidence 46677777543322244567889999999999999765342 445554 555678888776554 554444444 3444
Q ss_pred EEEEEeeCCccccccccHHHHHhhc---CCc
Q 043548 282 VFVQVVPLGLEWVAEVCFGTSAKAM---GLD 309 (385)
Q Consensus 282 ~viEi~P~g~~~~~~~~y~~~A~~~---gl~ 309 (385)
-.+...|.|++. ...+-..+++.+ |+.
T Consensus 235 P~i~~~PiG~~~-T~~fL~~l~~~~~~~g~~ 264 (511)
T TIGR01278 235 PYITTTPIGVNA-TRRFIREIAALLNQAGAD 264 (511)
T ss_pred CcccccccCHHH-HHHHHHHHHHHHhhcCCC
Confidence 445568999642 346778888887 755
No 133
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=22.72 E-value=1.4e+02 Score=30.70 Aligned_cols=99 Identities=14% Similarity=0.165 Sum_probs=61.0
Q ss_pred CCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecC-----------------CCCCCHHHHHHHHhcCCE--EEe
Q 043548 205 TRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEP-----------------TPKTSLRQAYALINSSHA--MVG 265 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~-----------------~~~~s~~eq~~l~~~adv--lVG 265 (385)
.+.++-+|....+ -.+.+|+.+.|++.|.+++.+-. ....+++ +++-+.+|++ +++
T Consensus 154 ~~~~VNlig~~~~----~~D~~ei~~lL~~~Gl~~~~~~d~s~~~~~~~~~~~~~~~~~g~~~~-~i~~~~~A~lniv~~ 228 (429)
T cd03466 154 KIEKINVIAGMMS----PADIREIKEILREFGIEYILLPDTSETLDGPFWGEYHRLPSGGTPIS-EIKGMGGAKATIELG 228 (429)
T ss_pred CCCcEEEECCCCC----hhHHHHHHHHHHHcCCCeEEecCccccccCCCCCCcceeCCCCCCHH-HHHhhccCcEEEEEc
Confidence 3456667754322 34689999999999999875421 1133454 4555666555 445
Q ss_pred e-chhh--hhhhhccCCCcEEEEE-eeCCccccccccHHHHHhhcCCc
Q 043548 266 V-HGAA--LTHSLFLRPGSVFVQV-VPLGLEWVAEVCFGTSAKAMGLD 309 (385)
Q Consensus 266 v-HGAg--Ltn~lFl~pgs~viEi-~P~g~~~~~~~~y~~~A~~~gl~ 309 (385)
. +++| ++..|-=+=|.-.+.. .|.|++. ...++..+++.+|..
T Consensus 229 ~~~~~g~~~A~~L~e~~giP~~~~~~P~G~~~-t~~~l~~l~~~~g~~ 275 (429)
T cd03466 229 MFVDHGLSAGSYLEEEFGIPNYRLPLPIGLRA-TDEFMSLLSKLTGKP 275 (429)
T ss_pred cCccchHHHHHHHHHHHCCCeeecCCCcChHH-HHHHHHHHHHHHCCC
Confidence 4 1444 4455554555554443 7888653 457889999998865
No 134
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=22.69 E-value=2e+02 Score=29.36 Aligned_cols=97 Identities=12% Similarity=0.081 Sum_probs=62.0
Q ss_pred CCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhcc--CCCcE
Q 043548 206 RPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHG-AALTHSLFL--RPGSV 282 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHG-AgLtn~lFl--~pgs~ 282 (385)
+.+|-+|. .. ..--|.+|+.+.|++.|.+++..-+ ...+++| ++-+.+|.+-|.+.+ .|+.-.-+| +=|.-
T Consensus 162 ~~~VNliG--~~--~~~~d~~ei~~lL~~~Gl~v~~~~~-~~~t~~e-i~~~~~A~lnlv~~~~~~~~~A~~L~er~GiP 235 (415)
T cd01977 162 DYTINYIG--DY--NIQGDTEVLQKYFERMGIQVLSTFT-GNGTYDD-LRWMHRAKLNVVNCARSAGYIANELKKRYGIP 235 (415)
T ss_pred CCcEEEEc--cC--CCcccHHHHHHHHHHcCCeEEEEEC-CCCCHHH-HHhcccCCEEEEEchhHHHHHHHHHHHHhCCC
Confidence 34566664 22 3344678899999999999964323 2456655 666888777555443 243333333 34666
Q ss_pred EEEEeeCCccccccccHHHHHhhcCCc
Q 043548 283 FVQVVPLGLEWVAEVCFGTSAKAMGLD 309 (385)
Q Consensus 283 viEi~P~g~~~~~~~~y~~~A~~~gl~ 309 (385)
.+.+.|+|++. ...++..+|+.+|+.
T Consensus 236 ~~~~~~~G~~~-t~~~l~~la~~~g~~ 261 (415)
T cd01977 236 RLDVDGFGFEY-CAESLRKIGAFFGIE 261 (415)
T ss_pred eEEeccCCHHH-HHHHHHHHHHHhCcc
Confidence 66676788642 357889999999965
No 135
>PF01870 Hjc: Archaeal holliday junction resolvase (hjc); InterPro: IPR002732 This entry represents Holliday junction resolvases (hjc gene) and related proteins, primarily from archaeal species []. The Holliday junction is an essential intermediate of homologous recombination. Holliday junctions are four-stranded DNA complexes that are formed during recombination and related DNA repair events. In the presence of divalent cations, these junctions exist predominantly as the stacked-X form in which the double-helical segments are coaxially stacked and twisted by 60 degrees in a right-handed direction across the junction cross-over. In this structure, the stacked arms resemble two adjacent double-helices, but are linked at the junction by two common strands that cross-over between the duplexes []. During homologous recombination, genetic information is physically exchanged between parental DNAs via crossing single strands of the same polarity within the four-way Holliday structure. This process is terminated by the endonucleolytic activity of resolvases, which convert the four-way DNA back to two double strands.; PDB: 2WJ0_A 2WIZ_B 2WIW_B 2WCW_C 2WCZ_A 1HH1_A 1GEF_D 1IPI_B 2EO0_B 1OB9_A ....
Probab=22.58 E-value=1.9e+02 Score=23.12 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=23.6
Q ss_pred HHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeechh
Q 043548 225 QVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHGA 269 (385)
Q Consensus 225 e~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHGA 269 (385)
|.|+++.|.+.||.|+-... .... ||+.+=+|-
T Consensus 3 Erel~~~L~~~Gf~v~R~~~-Sg~~-----------DiiA~~~~~ 35 (88)
T PF01870_consen 3 ERELVKILWERGFAVVRAAG-SGGG-----------DIIAGKGGR 35 (88)
T ss_dssp HHHHHHHHHHTT-EEEEBSC-CSSS-----------SEEEEETTE
T ss_pred HHHHHHHHHhCCcEEEEecC-CCCc-----------CEEEECCCE
Confidence 67999999999999997643 2222 888876653
No 136
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=22.19 E-value=85 Score=26.84 Aligned_cols=53 Identities=15% Similarity=0.232 Sum_probs=37.2
Q ss_pred ccccHHHHHHHHHHCCCEEEEec--CCCCCCHHHHHHH-HhcCCEEEeechhhhhh
Q 043548 221 VILNQVEVKRVAEDTGFEVTVFE--PTPKTSLRQAYAL-INSSHAMVGVHGAALTH 273 (385)
Q Consensus 221 ~i~Ne~ev~~~l~~~gf~v~~~~--~~~~~s~~eq~~l-~~~advlVGvHGAgLtn 273 (385)
.=.|-.-+.+.|++.|+++.... +++...+.+.++. ++++|++|-.=|.|.+.
T Consensus 15 ~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~D~VittGG~g~~~ 70 (144)
T PF00994_consen 15 RDSNGPFLAALLEELGIEVIRYGIVPDDPDAIKEALRRALDRADLVITTGGTGPGP 70 (144)
T ss_dssp EBHHHHHHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHHHTTSEEEEESSSSSST
T ss_pred EEhHHHHHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhhccCCEEEEcCCcCccc
Confidence 33466677889999999875322 3344566666654 47889999999988654
No 137
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=22.06 E-value=3e+02 Score=27.69 Aligned_cols=60 Identities=23% Similarity=0.321 Sum_probs=38.5
Q ss_pred eEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCC-CCCC---HHHHHHHH--hcCCEEEeechh
Q 043548 208 RLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPT-PKTS---LRQAYALI--NSSHAMVGVHGA 269 (385)
Q Consensus 208 rv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~-~~~s---~~eq~~l~--~~advlVGvHGA 269 (385)
|++++.-+.. ++.--.+++.+.|++.|.++.+++.- .+-+ +.+.++.+ .++|++||+=|.
T Consensus 30 ~~livt~~~~--~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGG 95 (377)
T cd08188 30 KVLLVSDPGV--IKAGWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLENGCDVIIAVGGG 95 (377)
T ss_pred eEEEEeCcch--hhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 6666664433 44334678999999999888766421 1122 44445555 478999999883
No 138
>PRK09989 hypothetical protein; Provisional
Probab=21.98 E-value=1.5e+02 Score=27.78 Aligned_cols=49 Identities=18% Similarity=0.150 Sum_probs=38.5
Q ss_pred cHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeechhhhh
Q 043548 224 NQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHGAALT 272 (385)
Q Consensus 224 Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHGAgLt 272 (385)
...+.++.+++.||+-+.+-.....+.++-.+++.+..+-|..|+++..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~~~~~~~ 64 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLALFNTAPG 64 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEEeccCCC
Confidence 4678999999999987654332357888888899999998888877654
No 139
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=21.87 E-value=1.4e+02 Score=29.33 Aligned_cols=40 Identities=28% Similarity=0.346 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHhcCCEEEeechhhhhhhhccCCCcEEEEEee
Q 043548 247 KTSLRQAYALINSSHAMVGVHGAALTHSLFLRPGSVFVQVVP 288 (385)
Q Consensus 247 ~~s~~eq~~l~~~advlVGvHGAgLtn~lFl~pgs~viEi~P 288 (385)
.+++.|-+++++.||++||. =+|..|+--+- |+-+|-|+.
T Consensus 248 ~~sL~el~ali~~a~l~Vs~-DSGp~HlAaA~-g~p~v~Lfg 287 (344)
T TIGR02201 248 KLTLPQLAALIDHARLFIGV-DSVPMHMAAAL-GTPLVALFG 287 (344)
T ss_pred CCCHHHHHHHHHhCCEEEec-CCHHHHHHHHc-CCCEEEEEC
Confidence 56899999999999999998 55555554332 334444553
No 140
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=21.82 E-value=1.9e+02 Score=29.98 Aligned_cols=96 Identities=14% Similarity=0.068 Sum_probs=62.7
Q ss_pred CCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeech-h--hhhhhhccCCCcE
Q 043548 206 RPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHG-A--ALTHSLFLRPGSV 282 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHG-A--gLtn~lFl~pgs~ 282 (385)
+..|-+|.-.. ..-+..|+.+.|++.|+++...-+. ..++ |+++-+.+|.+-|.+.+ + .++..|==+=|.-
T Consensus 197 ~~~VNiiG~~~----~~~d~~el~~lL~~~Gl~v~~~~~~-~~s~-eei~~~~~A~lniv~~~~~~~~~a~~L~e~~GiP 270 (456)
T TIGR01283 197 VHDINLIGEFN----VAGEFWHVKPLLEKLGIRVLATITG-DSRY-AEVQTAHRAKLNMVQCSKSMINLARKMEEKYGIP 270 (456)
T ss_pred CCcEEEEcCCC----CcccHHHHHHHHHHcCCeEEEEeCC-CCcH-HHHHhcccCcEEEEECHhHHHHHHHHHHHHcCCC
Confidence 45677776322 2236679999999999999854332 4455 56667788888766533 3 3444443344666
Q ss_pred EEEEeeCCccccccccHHHHHhhcCC
Q 043548 283 FVQVVPLGLEWVAEVCFGTSAKAMGL 308 (385)
Q Consensus 283 viEi~P~g~~~~~~~~y~~~A~~~gl 308 (385)
.++..|+|++. ...++..+|+.+|.
T Consensus 271 ~~~~~~~G~~~-T~~~L~~Ia~~lg~ 295 (456)
T TIGR01283 271 YFEGSFYGIED-TSKALRDIADLFGD 295 (456)
T ss_pred EEecCCCcHHH-HHHHHHHHHHHhCC
Confidence 67777888653 35688999998884
No 141
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=21.77 E-value=3e+02 Score=27.60 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=37.7
Q ss_pred eEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCC---CHHHHHHHH--hcCCEEEeechh
Q 043548 208 RLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKT---SLRQAYALI--NSSHAMVGVHGA 269 (385)
Q Consensus 208 rv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~---s~~eq~~l~--~~advlVGvHGA 269 (385)
|++++.-++. . -.+++.+.|++.|+++.+++...+- .+.+.++++ .++|++||+=|.
T Consensus 24 r~livtd~~~--~---~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGG 85 (374)
T cd08183 24 RVLLVTGASS--L---RAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIGGG 85 (374)
T ss_pred cEEEEECCch--H---HHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEecCc
Confidence 6666664443 3 4567889999999887665422222 255566666 379999999885
No 142
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=21.73 E-value=9.7e+02 Score=25.37 Aligned_cols=134 Identities=12% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCEEEEecCCCCCCHHHH--------HHHHhcCCEEEeechhh--------hhhhhccCCCcEEEEEeeC
Q 043548 226 VEVKRVAEDTGFEVTVFEPTPKTSLRQA--------YALINSSHAMVGVHGAA--------LTHSLFLRPGSVFVQVVPL 289 (385)
Q Consensus 226 ~ev~~~l~~~gf~v~~~~~~~~~s~~eq--------~~l~~~advlVGvHGAg--------Ltn~lFl~pgs~viEi~P~ 289 (385)
.++++.|+.+|++|...++.......+. -+++..||+++-.=-.. -..+--|+||+.+|-+---
T Consensus 153 ~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG 232 (526)
T PRK13581 153 SEVAKRAKAFGMKVIAYDPYISPERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARG 232 (526)
T ss_pred HHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCC
Q ss_pred C-ccccccccHHHHHhhcCCcEEEEEecccccchhhhcCCCCccccCCccc---cCCCcchhhhhhhhcCCceEEchHhH
Q 043548 290 G-LEWVAEVCFGTSAKAMGLDYMEYKINAEESSLIEKYNKNDTVIKDPVAF---RGKSWSDAAMNIYLKEQNVKLDLFRF 365 (385)
Q Consensus 290 g-~~~~~~~~y~~~A~~~gl~Y~~y~~~~~essl~~~y~~d~~v~~dP~~~---~~~gw~~~~~~~yl~~Qdv~ldi~rF 365 (385)
+ + ....-...-+.-.+......+-..|. +.|||...-|..+ |-.|+ -.+..
T Consensus 233 ~~v---de~aL~~aL~~g~i~gAaLDVf~~EP------~~~~pL~~~~nvilTPHia~~----------------t~e~~ 287 (526)
T PRK13581 233 GII---DEAALAEALKSGKVAGAALDVFEKEP------PTDSPLFELPNVVVTPHLGAS----------------TAEAQ 287 (526)
T ss_pred cee---CHHHHHHHHhcCCeeEEEEecCCCCC------CCCchhhcCCCeeEcCccccc----------------hHHHH
Q ss_pred HHHHHHHHHHHHhhhhcCC
Q 043548 366 REYLKKVYKKAKRFMDKGE 384 (385)
Q Consensus 366 ~~~L~~a~~~~~~~~~~~~ 384 (385)
......+.+.+.+|+..+.
T Consensus 288 ~~~~~~~~~ni~~~~~g~~ 306 (526)
T PRK13581 288 ENVAIQVAEQVIDALRGGP 306 (526)
T ss_pred HHHHHHHHHHHHHHHcCCC
No 143
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=21.47 E-value=1.3e+02 Score=25.83 Aligned_cols=39 Identities=13% Similarity=0.111 Sum_probs=27.9
Q ss_pred HHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCE-EEee
Q 043548 226 VEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHA-MVGV 266 (385)
Q Consensus 226 ~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~adv-lVGv 266 (385)
+-+..+|+..||+|+.+- .+.|.++.++....-++ +||+
T Consensus 17 niv~~~L~~~GfeVidLG--~~v~~e~~v~aa~~~~adiVgl 56 (128)
T cd02072 17 KILDHAFTEAGFNVVNLG--VLSPQEEFIDAAIETDADAILV 56 (128)
T ss_pred HHHHHHHHHCCCEEEECC--CCCCHHHHHHHHHHcCCCEEEE
Confidence 345568888999999764 47899998888766444 4443
No 144
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=21.44 E-value=2.8e+02 Score=22.27 Aligned_cols=54 Identities=17% Similarity=0.282 Sum_probs=34.4
Q ss_pred eEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHh--cCCEEEee
Q 043548 208 RLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALIN--SSHAMVGV 266 (385)
Q Consensus 208 rv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~--~advlVGv 266 (385)
|+++..+... ..=+...-+...|++.|++|..++.. .+.++-.+.+. +.|+ ||+
T Consensus 2 ~v~~~~~~~~--~~~lGl~~la~~l~~~G~~v~~~d~~--~~~~~l~~~~~~~~pd~-V~i 57 (121)
T PF02310_consen 2 RVVLACVPGE--VHPLGLLYLAAYLRKAGHEVDILDAN--VPPEELVEALRAERPDV-VGI 57 (121)
T ss_dssp EEEEEEBTTS--STSHHHHHHHHHHHHTTBEEEEEESS--B-HHHHHHHHHHTTCSE-EEE
T ss_pred EEEEEeeCCc--chhHHHHHHHHHHHHCCCeEEEECCC--CCHHHHHHHHhcCCCcE-EEE
Confidence 4566666554 55566778889999999999988753 44444444433 5565 444
No 145
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=21.40 E-value=1.2e+02 Score=28.89 Aligned_cols=92 Identities=16% Similarity=0.212 Sum_probs=53.4
Q ss_pred CCCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEE-eechhhhhhhhccCCCcE
Q 043548 204 STRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMV-GVHGAALTHSLFLRPGSV 282 (385)
Q Consensus 204 ~~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlV-GvHGAgLtn~lFl~pgs~ 282 (385)
..+|+++++....- -..++++++..||+|+++++.++.- .+ ..+..++.++ ......+.+ +++++.
T Consensus 98 ~p~~~L~IfGaG~v-------a~~la~la~~lGf~V~v~D~R~~~~-~~--~~~~~~~~~~~~~~~~~~~~---~~~~t~ 164 (246)
T TIGR02964 98 PPAPHVVLFGAGHV-------GRALVRALAPLPCRVTWVDSREAEF-PE--DLPDGVATLVTDEPEAEVAE---APPGSY 164 (246)
T ss_pred CCCCEEEEECCcHH-------HHHHHHHHhcCCCEEEEEeCCcccc-cc--cCCCCceEEecCCHHHHHhc---CCCCcE
Confidence 36789999988775 4788899999999999998764311 00 1123444333 222344443 457776
Q ss_pred EEEEeeCCccccccccHHHHHhhc---CCcEEEE
Q 043548 283 FVQVVPLGLEWVAEVCFGTSAKAM---GLDYMEY 313 (385)
Q Consensus 283 viEi~P~g~~~~~~~~y~~~A~~~---gl~Y~~y 313 (385)
+| |+-.+. ..+..-+..++ ...|+.-
T Consensus 165 vv-i~th~h----~~D~~~L~~aL~~~~~~YIG~ 193 (246)
T TIGR02964 165 FL-VLTHDH----ALDLELCHAALRRGDFAYFGL 193 (246)
T ss_pred EE-EEeCCh----HHHHHHHHHHHhCCCCcEEEE
Confidence 66 444442 22344444444 4667753
No 146
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=21.37 E-value=5.5e+02 Score=25.42 Aligned_cols=105 Identities=13% Similarity=0.159 Sum_probs=58.3
Q ss_pred CCCCeEEEEEccCCC-CcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHH--hcCCEEEeechhh-hhhhhccCC
Q 043548 204 STRPRLMLMSRRGGL-GRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALI--NSSHAMVGVHGAA-LTHSLFLRP 279 (385)
Q Consensus 204 ~~~prv~~isR~~~~-~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~--~~advlVGvHGAg-Ltn~lFl~p 279 (385)
..+|+-+-|+=.|-. -+. ...|+++.+++.|+.+.+.. + .++.+.++.+ .-..+.|+++|+- =++--+.++
T Consensus 127 a~~~~~v~iSl~GEPlL~p--~l~eli~~~k~~Gi~~~L~T-N--G~~~e~l~~L~~~~d~i~VSLda~~~e~~~~i~~~ 201 (322)
T PRK13762 127 AMEPKHVAISLSGEPTLYP--YLPELIEEFHKRGFTTFLVT-N--GTRPDVLEKLEEEPTQLYVSLDAPDEETYKKINRP 201 (322)
T ss_pred ccCCCEEEEeCCccccchh--hHHHHHHHHHHcCCCEEEEC-C--CCCHHHHHHHHhcCCEEEEEccCCCHHHHHHHhCC
Confidence 355776666644431 121 46789999999999776543 2 2335666666 3345789999863 233333221
Q ss_pred -------------------C-cEEEEEe-eCCccccccccHHHHHhhcCCcEEEE
Q 043548 280 -------------------G-SVFVQVV-PLGLEWVAEVCFGTSAKAMGLDYMEY 313 (385)
Q Consensus 280 -------------------g-s~viEi~-P~g~~~~~~~~y~~~A~~~gl~Y~~y 313 (385)
| .++|.+. -.|++-.....|..+++.+|..+++.
T Consensus 202 ~~~~~~~~vl~~L~~l~~~~~~~~ir~tlv~g~Nd~e~~~~a~l~~~~~~~~Iel 256 (322)
T PRK13762 202 VIPDAWERILETLELLPSKKTRTVIRITLVKGYNMHDPEGFAKLIERANPDFVEV 256 (322)
T ss_pred CCCCcHHHHHHHHHHHHhCCCCEEEEEEEECCcCccHHHHHHHHHHHcCCCEEEE
Confidence 1 2344432 12332222236777777778877763
No 147
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=21.24 E-value=1.7e+02 Score=30.14 Aligned_cols=81 Identities=17% Similarity=0.210 Sum_probs=49.2
Q ss_pred HHHHHhCCCCcCCCCCCCCCCCeEEEEEccCC--------CCccc--ccHHHHHHHHHHCCCEEEEec--CCCCCCHHHH
Q 043548 186 LLDEAYSHGRIRNRNNSPSTRPRLMLMSRRGG--------LGRVI--LNQVEVKRVAEDTGFEVTVFE--PTPKTSLRQA 253 (385)
Q Consensus 186 fl~~~~~l~~~~~~~~~~~~~prv~~isR~~~--------~~R~i--~Ne~ev~~~l~~~gf~v~~~~--~~~~~s~~eq 253 (385)
-+..++|+... +--++||+.+|+=.+. ..=+| .|..-+.+.|++.|++++... +++.-.+.+.
T Consensus 162 ~lLas~G~~~V-----~V~~~prV~iistGdEl~~~~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~ 236 (411)
T PRK10680 162 PVLASLGIAEV-----PVVRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAA 236 (411)
T ss_pred HHHHhCCCCeE-----EecCCCEEEEEccCCeEeCCCCCCCCCEEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHH
Confidence 34566666432 1236899988874321 01233 344557788999999876443 3333345565
Q ss_pred HHH-HhcCCEEEeechhhh
Q 043548 254 YAL-INSSHAMVGVHGAAL 271 (385)
Q Consensus 254 ~~l-~~~advlVGvHGAgL 271 (385)
++- ..++|++|..=|++.
T Consensus 237 l~~a~~~~DlvIttGG~S~ 255 (411)
T PRK10680 237 FIEADSQADVVISSGGVSV 255 (411)
T ss_pred HHHhccCCCEEEEcCCCCC
Confidence 543 467999999887774
No 148
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=21.19 E-value=2.4e+02 Score=27.20 Aligned_cols=61 Identities=11% Similarity=0.221 Sum_probs=35.1
Q ss_pred CCeEEEEEccCCCCccc--ccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCC-EEEeech
Q 043548 206 RPRLMLMSRRGGLGRVI--LNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSH-AMVGVHG 268 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i--~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~ad-vlVGvHG 268 (385)
+.|+.++-=..+..|.+ ..-..+.++|++.|++++.++.. ...+.+.+... ..| |+.+.||
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~~-~~~~~~~l~~~-~~d~vf~~lhG 66 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDAS-GKELVAKLLEL-KPDKCFVALHG 66 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcCC-chhHHHHhhcc-CCCEEEEeCCC
Confidence 34665555444444543 45678899999999999888753 12222222211 344 4556666
No 149
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=21.17 E-value=4.5e+02 Score=25.54 Aligned_cols=95 Identities=14% Similarity=0.134 Sum_probs=53.3
Q ss_pred CeEEEEEccCCCCcccccHHHHHHHHHHC-CCEEEEecCCCCCCHHHHHHHHhcCCEEEeechhhhhh---------hhc
Q 043548 207 PRLMLMSRRGGLGRVILNQVEVKRVAEDT-GFEVTVFEPTPKTSLRQAYALINSSHAMVGVHGAALTH---------SLF 276 (385)
Q Consensus 207 prv~~isR~~~~~R~i~Ne~ev~~~l~~~-gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHGAgLtn---------~lF 276 (385)
.++.+++|+.. ...+.+++.+.+.+. +..+.+.+.. . .......+.++|++|-.--.||.+ .-+
T Consensus 149 ~~i~i~nRt~~---~~~ka~~la~~~~~~~~~~~~~~~~~-~--~~~l~~~~~~aDivINaTp~Gm~~~~~~~~~~~~~~ 222 (288)
T PRK12749 149 KEIKLFNRRDE---FFDKALAFAQRVNENTDCVVTVTDLA-D--QQAFAEALASADILTNGTKVGMKPLENESLVNDISL 222 (288)
T ss_pred CEEEEEeCCcc---HHHHHHHHHHHhhhccCceEEEechh-h--hhhhhhhcccCCEEEECCCCCCCCCCCCCCCCcHHH
Confidence 46788887642 112234444444332 3333332211 1 111122456899998777666643 124
Q ss_pred cCCCcEEEEEeeCCccccccccHHHHHhhcCCcEE
Q 043548 277 LRPGSVFVQVVPLGLEWVAEVCFGTSAKAMGLDYM 311 (385)
Q Consensus 277 l~pgs~viEi~P~g~~~~~~~~y~~~A~~~gl~Y~ 311 (385)
++++..|++++-. + ..+.|-..|+..|.+..
T Consensus 223 l~~~~~v~D~vY~---P-~~T~ll~~A~~~G~~~~ 253 (288)
T PRK12749 223 LHPGLLVTECVYN---P-HMTKLLQQAQQAGCKTI 253 (288)
T ss_pred CCCCCEEEEecCC---C-ccCHHHHHHHHCCCeEE
Confidence 6788899998721 1 35678899999998654
No 150
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=21.12 E-value=65 Score=24.74 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=14.1
Q ss_pred cccccHHHHHHHHHHCCCEEE
Q 043548 220 RVILNQVEVKRVAEDTGFEVT 240 (385)
Q Consensus 220 R~i~Ne~ev~~~l~~~gf~v~ 240 (385)
..|.+++||++.|++.||+|.
T Consensus 17 ~~i~sQ~eL~~~L~~~Gi~vT 37 (70)
T PF01316_consen 17 HEISSQEELVELLEEEGIEVT 37 (70)
T ss_dssp S---SHHHHHHHHHHTT-T--
T ss_pred CCcCCHHHHHHHHHHcCCCcc
Confidence 568899999999999999865
No 151
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=21.08 E-value=2.4e+02 Score=28.65 Aligned_cols=59 Identities=20% Similarity=0.323 Sum_probs=38.0
Q ss_pred eEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCC-CCC---CHHHHHHHH--hcCCEEEeech
Q 043548 208 RLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPT-PKT---SLRQAYALI--NSSHAMVGVHG 268 (385)
Q Consensus 208 rv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~-~~~---s~~eq~~l~--~~advlVGvHG 268 (385)
|+++|.-+.. +..-=.+++.+.|++.|+++.+++.- .+- .+.+-++++ .++|+|||+=|
T Consensus 23 k~liVtd~~~--~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG 87 (398)
T cd08178 23 RAFIVTDRFM--VKLGYVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSFKPDTIIALGG 87 (398)
T ss_pred eEEEEcChhH--HhCccHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 6667764332 33334578899999999988766421 122 244555555 36899999999
No 152
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=21.03 E-value=1.2e+02 Score=31.16 Aligned_cols=94 Identities=19% Similarity=0.287 Sum_probs=59.2
Q ss_pred CCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeec--hhhhhhhhccCCCcEE
Q 043548 206 RPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVH--GAALTHSLFLRPGSVF 283 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvH--GAgLtn~lFl~pgs~v 283 (385)
+.++.++.--. .-+..|+.+.|++.|++++.+-++ .++.| +..+..+..++..+ +..++..| -+-|.-.
T Consensus 166 ~~~VniiG~~~-----~~d~~el~~lL~~~Gi~v~~~lp~--~~~~d-~~~~~~~~~~~~~~~~~~~~A~~L-~~~GiP~ 236 (427)
T PRK02842 166 HPSLVLVGSLA-----DVVEDQLTLEFKKLGIGVVGFLPA--RRFTE-LPAIGPGTVVALAQPFLSDTARAL-RERGAKV 236 (427)
T ss_pred CCcEEEEEeCC-----cchHHHHHHHHHHcCCeeEEEeCC--ccHHH-HhhcCcCcEEEEeCHHHHHHHHHH-HHcCCcc
Confidence 34566665422 344689999999999998633243 44544 45554444544444 44556666 5667665
Q ss_pred EEE-eeCCccccccccHHHHHhhcCCc
Q 043548 284 VQV-VPLGLEWVAEVCFGTSAKAMGLD 309 (385)
Q Consensus 284 iEi-~P~g~~~~~~~~y~~~A~~~gl~ 309 (385)
+.. +|+|++- ...++..+|+..|+.
T Consensus 237 ~~~~~P~G~~~-T~~~L~~la~~~g~~ 262 (427)
T PRK02842 237 LTAPFPLGPEG-TRAWLEAAAAAFGID 262 (427)
T ss_pred ccCCCCcChHH-HHHHHHHHHHHhCcC
Confidence 555 7888642 457889999998864
No 153
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=20.94 E-value=3.4e+02 Score=27.07 Aligned_cols=59 Identities=19% Similarity=0.314 Sum_probs=38.2
Q ss_pred eEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCC-CCCC---HHHHHHHH--hcCCEEEeech
Q 043548 208 RLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPT-PKTS---LRQAYALI--NSSHAMVGVHG 268 (385)
Q Consensus 208 rv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~-~~~s---~~eq~~l~--~~advlVGvHG 268 (385)
|++++..+.. .+..=.+++.+.|++.|.++.+++.. .+-+ +.+.++.+ .++|+|||+=|
T Consensus 25 ~~lvv~~~~~--~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGG 89 (370)
T cd08551 25 KALIVTDPGL--VKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGG 89 (370)
T ss_pred eEEEEeCcch--hhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 6666665444 33333478999999999888766422 1222 44555555 37899999998
No 154
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=20.84 E-value=3.1e+02 Score=25.77 Aligned_cols=55 Identities=13% Similarity=0.211 Sum_probs=35.1
Q ss_pred cHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhc------CC---EEEeechhhhhhhhccCCC
Q 043548 224 NQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINS------SH---AMVGVHGAALTHSLFLRPG 280 (385)
Q Consensus 224 Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~------ad---vlVGvHGAgLtn~lFl~pg 280 (385)
..+.|.+.++++||+|.+........+.+.++-+.. .| +++.-||- .|.++...|
T Consensus 31 D~~~l~~~f~~lgF~V~~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~~~sHG~--~~~l~~~D~ 94 (241)
T smart00115 31 DAENLTELFQSLGYEVHVKNNLTAEEMLEELKEFAERPEHSDSDSFVCVLLSHGE--EGGIYGTDH 94 (241)
T ss_pred HHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhccccCCCCEEEEEEcCCCC--CCeEEEecC
Confidence 466788899999999998753333345555555544 33 34567884 477666555
No 155
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=20.83 E-value=2.5e+02 Score=26.50 Aligned_cols=41 Identities=27% Similarity=0.220 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHhcCCEEEeechhhhhhhhccCCCcEEEEEeeC
Q 043548 247 KTSLRQAYALINSSHAMVGVHGAALTHSLFLRPGSVFVQVVPL 289 (385)
Q Consensus 247 ~~s~~eq~~l~~~advlVGvHGAgLtn~lFl~pgs~viEi~P~ 289 (385)
..++.|.+.+++.||++||+-. |..|+-- --|.-+|-|++.
T Consensus 186 ~~~l~e~~~li~~~~l~I~~Ds-g~~HlA~-a~~~p~i~l~g~ 226 (279)
T cd03789 186 KTSLRELAALLARADLVVTNDS-GPMHLAA-ALGTPTVALFGP 226 (279)
T ss_pred CCCHHHHHHHHHhCCEEEeeCC-HHHHHHH-HcCCCEEEEECC
Confidence 5689999999999999999964 3333332 225566666654
No 156
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=20.73 E-value=4.4e+02 Score=23.43 Aligned_cols=70 Identities=17% Similarity=0.150 Sum_probs=42.9
Q ss_pred eEEEEEccCCCCcccccHHHHHHHHHH-CCCEEEEecCCCCCCHHHHHHHHhcCCEEEeechhhhhh----hhccCCCcE
Q 043548 208 RLMLMSRRGGLGRVILNQVEVKRVAED-TGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHGAALTH----SLFLRPGSV 282 (385)
Q Consensus 208 rv~~isR~~~~~R~i~Ne~ev~~~l~~-~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHGAgLtn----~lFl~pgs~ 282 (385)
++++++|+.. ..+++.+.+++ .+.++...+ ..+.++..+.++.+|++|..-.+|..+ ..+.+++.+
T Consensus 54 ~V~l~~R~~~------~~~~l~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~diVi~at~~g~~~~~~~~~~~~~~~v 124 (194)
T cd01078 54 RVVLVGRDLE------RAQKAADSLRARFGEGVGAVE---TSDDAARAAAIKGADVVFAAGAAGVELLEKLAWAPKPLAV 124 (194)
T ss_pred EEEEEcCCHH------HHHHHHHHHHhhcCCcEEEee---CCCHHHHHHHHhcCCEEEECCCCCceechhhhcccCceeE
Confidence 6777777532 23445554443 356665543 356666678889999999988888742 112334566
Q ss_pred EEEE
Q 043548 283 FVQV 286 (385)
Q Consensus 283 viEi 286 (385)
++.+
T Consensus 125 v~D~ 128 (194)
T cd01078 125 AADV 128 (194)
T ss_pred EEEc
Confidence 6664
No 157
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=20.62 E-value=1.6e+02 Score=28.92 Aligned_cols=68 Identities=13% Similarity=0.185 Sum_probs=42.6
Q ss_pred eEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeechhhh----hhhhccCCCcEE
Q 043548 208 RLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHGAAL----THSLFLRPGSVF 283 (385)
Q Consensus 208 rv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHGAgL----tn~lFl~pgs~v 283 (385)
++.+.+|+. .+.+++++.+++.|++++..+. . -+.+..|||++..-.+.- -..=|++||+.|
T Consensus 155 ~v~v~~r~~------~~~~~~~~~~~~~~~~v~~~~~-----~---~~av~~aDii~taT~s~~~~P~~~~~~l~~g~hi 220 (313)
T PF02423_consen 155 EVRVYSRSP------ERAEAFAARLRDLGVPVVAVDS-----A---EEAVRGADIIVTATPSTTPAPVFDAEWLKPGTHI 220 (313)
T ss_dssp EEEEE-SSH------HHHHHHHHHHHCCCTCEEEESS-----H---HHHHTTSSEEEE----SSEEESB-GGGS-TT-EE
T ss_pred EEEEEccCh------hHHHHHHHhhccccccceeccc-----h---hhhcccCCEEEEccCCCCCCccccHHHcCCCcEE
Confidence 566677644 3567888888888888887642 2 345899999999888766 555688999998
Q ss_pred EEEeeC
Q 043548 284 VQVVPL 289 (385)
Q Consensus 284 iEi~P~ 289 (385)
+-|=.+
T Consensus 221 ~~iGs~ 226 (313)
T PF02423_consen 221 NAIGSY 226 (313)
T ss_dssp EE-S-S
T ss_pred EEecCC
Confidence 877544
No 158
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=20.49 E-value=2.8e+02 Score=27.81 Aligned_cols=60 Identities=17% Similarity=0.272 Sum_probs=37.3
Q ss_pred eEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCC-CCC---HHHHHHHHh--cCCEEEeech
Q 043548 208 RLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTP-KTS---LRQAYALIN--SSHAMVGVHG 268 (385)
Q Consensus 208 rv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~-~~s---~~eq~~l~~--~advlVGvHG 268 (385)
|++++.-++. .++.--.+++.+.|++.|.++.+++.-+ +-+ +.+-++.+. ++|++||+=|
T Consensus 25 r~livt~~~~-~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG 90 (375)
T cd08179 25 KAFIVTGGGS-MKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWIIALGG 90 (375)
T ss_pred eEEEEeCchH-HHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 5566642221 1333334789999999999887764211 222 445555554 7899999988
No 159
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=20.22 E-value=2e+02 Score=25.00 Aligned_cols=83 Identities=18% Similarity=0.334 Sum_probs=44.8
Q ss_pred HHHHHHHCCCEEEEecCCCCCCHHH-----------HHHHHhcCCEEEee--chhhhhhhhcc-------CCCcEEEEEe
Q 043548 228 VKRVAEDTGFEVTVFEPTPKTSLRQ-----------AYALINSSHAMVGV--HGAALTHSLFL-------RPGSVFVQVV 287 (385)
Q Consensus 228 v~~~l~~~gf~v~~~~~~~~~s~~e-----------q~~l~~~advlVGv--HGAgLtn~lFl-------~pgs~viEi~ 287 (385)
+.+.|.+.|++|.+.+.. ....++ -.+++.+||+++.+ .+...-..++- ++|+.+|..-
T Consensus 16 ~a~~L~~~g~~v~~~d~~-~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~~~l~~g~iiid~s 94 (163)
T PF03446_consen 16 MARNLAKAGYEVTVYDRS-PEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENILAGLRPGKIIIDMS 94 (163)
T ss_dssp HHHHHHHTTTEEEEEESS-HHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHGGGS-TTEEEEE-S
T ss_pred HHHHHHhcCCeEEeeccc-hhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHhhccccceEEEecC
Confidence 445555667777665532 001111 13557788998874 45666566553 8999999875
Q ss_pred eCCccccccccHHHHHhhcCCcEEEE
Q 043548 288 PLGLEWVAEVCFGTSAKAMGLDYMEY 313 (385)
Q Consensus 288 P~g~~~~~~~~y~~~A~~~gl~Y~~y 313 (385)
... +.............|.+|+.=
T Consensus 95 T~~--p~~~~~~~~~~~~~g~~~vda 118 (163)
T PF03446_consen 95 TIS--PETSRELAERLAAKGVRYVDA 118 (163)
T ss_dssp S----HHHHHHHHHHHHHTTEEEEEE
T ss_pred Ccc--hhhhhhhhhhhhhccceeeee
Confidence 443 112233444455678888863
Done!