Query 043548
Match_columns 385
No_of_seqs 270 out of 668
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 10:11:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043548.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043548hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a5o_A Bifunctional protein fo 79.8 4.7 0.00016 38.1 7.7 73 205-287 160-233 (286)
2 3ngx_A Bifunctional protein fo 78.0 5.4 0.00019 37.5 7.5 71 206-286 150-221 (276)
3 3l07_A Bifunctional protein fo 76.0 6.2 0.00021 37.3 7.3 73 205-287 160-233 (285)
4 3p2o_A Bifunctional protein fo 75.9 6.6 0.00023 37.1 7.5 73 205-287 159-232 (285)
5 3czx_A Putative N-acetylmuramo 75.9 4.1 0.00014 35.7 5.7 47 227-273 36-84 (182)
6 1a4i_A Methylenetetrahydrofola 74.8 3.2 0.00011 39.6 5.0 73 205-287 164-237 (301)
7 1b0a_A Protein (fold bifunctio 74.1 9.7 0.00033 36.0 8.1 73 205-287 158-231 (288)
8 4a26_A Putative C-1-tetrahydro 72.9 8.7 0.0003 36.5 7.5 75 205-287 164-239 (300)
9 3tnl_A Shikimate dehydrogenase 71.7 23 0.00078 33.7 10.3 94 208-311 180-283 (315)
10 4b4u_A Bifunctional protein fo 68.6 24 0.00082 33.5 9.5 72 205-286 178-250 (303)
11 1wwk_A Phosphoglycerate dehydr 65.2 65 0.0022 30.1 12.0 130 226-381 155-306 (307)
12 3t4e_A Quinate/shikimate dehyd 64.2 39 0.0013 32.0 10.2 94 208-311 174-277 (312)
13 3evt_A Phosphoglycerate dehydr 62.7 69 0.0024 30.4 11.7 136 226-384 150-304 (324)
14 1jwq_A N-acetylmuramoyl-L-alan 60.6 13 0.00045 32.3 5.7 47 227-273 36-86 (179)
15 3qay_A Endolysin; amidase A/B 60.1 16 0.00056 31.7 6.2 44 228-271 38-89 (180)
16 2cuk_A Glycerate dehydrogenase 57.6 90 0.0031 29.2 11.5 132 226-383 157-304 (311)
17 2c2x_A Methylenetetrahydrofola 57.0 8.6 0.00029 36.2 4.0 72 205-286 157-231 (281)
18 2amj_A Modulator of drug activ 56.5 19 0.00065 31.6 6.1 39 227-265 38-76 (204)
19 3gvx_A Glycerate dehydrogenase 55.8 50 0.0017 30.9 9.2 129 226-382 135-282 (290)
20 3don_A Shikimate dehydrogenase 55.8 26 0.00087 32.6 7.1 94 207-311 118-230 (277)
21 3s40_A Diacylglycerol kinase; 54.9 64 0.0022 29.9 9.9 82 209-290 12-98 (304)
22 3pp8_A Glyoxylate/hydroxypyruv 54.4 1.3E+02 0.0046 28.2 12.1 134 226-384 152-304 (315)
23 1edz_A 5,10-methylenetetrahydr 53.9 15 0.0005 35.2 5.2 76 205-286 176-274 (320)
24 3gg9_A D-3-phosphoglycerate de 53.9 97 0.0033 29.7 11.2 134 226-382 173-326 (352)
25 3ne8_A N-acetylmuramoyl-L-alan 53.8 20 0.00069 32.6 5.9 45 229-273 40-88 (234)
26 3hg7_A D-isomer specific 2-hyd 52.0 1.1E+02 0.0039 28.8 11.2 134 226-384 153-305 (324)
27 3rpe_A MDAB, modulator of drug 51.0 19 0.00066 32.4 5.2 60 206-265 25-89 (218)
28 3k5p_A D-3-phosphoglycerate de 49.8 1.6E+02 0.0055 29.0 12.2 136 226-383 169-324 (416)
29 4g2n_A D-isomer specific 2-hyd 49.1 1.3E+02 0.0044 28.7 11.1 130 226-383 186-338 (345)
30 2fzv_A Putative arsenical resi 48.4 27 0.00093 32.6 6.0 57 205-265 57-129 (279)
31 4hy3_A Phosphoglycerate oxidor 48.0 1.5E+02 0.0053 28.5 11.6 131 226-383 189-341 (365)
32 3l4e_A Uncharacterized peptida 46.6 43 0.0015 29.6 6.8 67 206-273 27-93 (206)
33 2dko_A Caspase-3; low barrier 46.3 18 0.0006 30.5 3.9 43 224-269 42-95 (146)
34 1xov_A PLY protein, plypsa; al 46.3 14 0.00048 35.5 3.7 42 229-270 47-94 (326)
35 1gdh_A D-glycerate dehydrogena 46.2 1.6E+02 0.0055 27.5 11.2 130 226-383 159-312 (320)
36 2g76_A 3-PGDH, D-3-phosphoglyc 45.4 1.2E+02 0.0042 28.7 10.3 135 226-384 178-331 (335)
37 1qtn_A Caspase-8; apoptosis, d 44.6 25 0.00087 30.1 4.8 52 224-280 56-118 (164)
38 2egg_A AROE, shikimate 5-dehyd 42.7 64 0.0022 29.9 7.7 56 252-311 197-260 (297)
39 2dbq_A Glyoxylate reductase; D 42.5 1.8E+02 0.0061 27.3 10.9 135 226-384 163-316 (334)
40 2j32_A Caspase-3; Pro-caspase3 42.4 23 0.00079 32.3 4.4 55 224-280 42-104 (250)
41 1mkz_A Molybdenum cofactor bio 41.4 47 0.0016 28.3 6.0 68 205-273 9-83 (172)
42 2ql9_A Caspase-7; cysteine pro 41.3 19 0.00066 31.3 3.5 52 224-280 70-132 (173)
43 1nw9_B Caspase 9, apoptosis-re 41.2 19 0.00065 33.4 3.7 44 224-270 47-101 (277)
44 1sc6_A PGDH, D-3-phosphoglycer 40.1 2.1E+02 0.0071 27.9 11.2 135 226-382 158-312 (404)
45 1m72_A Caspase-1; caspase, cys 39.9 24 0.00082 32.8 4.2 56 223-280 56-119 (272)
46 2eez_A Alanine dehydrogenase; 39.5 88 0.003 29.8 8.3 93 220-318 14-120 (369)
47 2gt1_A Lipopolysaccharide hept 39.2 52 0.0018 30.3 6.5 82 205-288 177-280 (326)
48 2pi1_A D-lactate dehydrogenase 38.7 67 0.0023 30.5 7.3 141 226-384 154-322 (334)
49 3tov_A Glycosyl transferase fa 38.2 1.4E+02 0.0049 28.0 9.5 81 206-288 185-288 (349)
50 4dgs_A Dehydrogenase; structur 38.0 1.8E+02 0.0062 27.6 10.2 131 226-383 184-333 (340)
51 1psw_A ADP-heptose LPS heptosy 37.2 1.6E+02 0.0055 26.9 9.6 68 220-289 195-289 (348)
52 3sir_A Caspase; hydrolase; 2.6 37.0 32 0.0011 31.7 4.4 55 223-279 44-106 (259)
53 3p45_A Caspase-6; protease, hu 36.0 37 0.0013 29.7 4.4 53 224-281 70-133 (179)
54 2h54_A Caspase-1; allosteric s 34.8 40 0.0014 29.3 4.5 47 208-257 45-96 (178)
55 1j4a_A D-LDH, D-lactate dehydr 34.8 2.5E+02 0.0084 26.4 10.6 137 226-383 159-324 (333)
56 3h11_B Caspase-8; cell death, 34.7 33 0.0011 31.8 4.2 53 224-281 50-113 (271)
57 2zuv_A Lacto-N-biose phosphory 33.6 9.7 0.00033 40.2 0.3 118 205-335 437-591 (759)
58 2nn3_C Caspase-1; cysteine pro 33.2 40 0.0014 32.0 4.6 56 223-280 84-147 (310)
59 1f1j_A Caspase-7 protease; cas 33.1 26 0.0009 33.2 3.2 56 223-280 94-157 (305)
60 2ekl_A D-3-phosphoglycerate de 32.9 1.8E+02 0.006 27.2 9.1 138 226-384 155-311 (313)
61 1fme_A FSD-EY peptide; beta-BE 32.6 34 0.0012 20.0 2.4 17 219-235 9-25 (28)
62 2yxb_A Coenzyme B12-dependent 32.6 1.3E+02 0.0043 25.3 7.3 56 204-263 16-73 (161)
63 3od5_A Caspase-6; caspase doma 32.2 38 0.0013 31.4 4.2 54 223-281 46-110 (278)
64 2fi0_A Conserved domain protei 32.1 31 0.0011 25.8 2.9 21 220-240 58-78 (81)
65 2pjk_A 178AA long hypothetical 31.6 86 0.0029 26.9 6.1 70 204-273 13-95 (178)
66 2f62_A Nucleoside 2-deoxyribos 31.4 71 0.0024 27.2 5.5 40 225-266 29-74 (161)
67 3jyo_A Quinate/shikimate dehyd 31.1 1.4E+02 0.0047 27.6 7.9 53 255-311 190-249 (283)
68 2vhw_A Alanine dehydrogenase; 30.3 1.5E+02 0.0051 28.4 8.3 91 220-315 14-119 (377)
69 2yq5_A D-isomer specific 2-hyd 29.9 2.6E+02 0.009 26.5 9.9 134 226-383 161-325 (343)
70 3fbt_A Chorismate mutase and s 29.7 2.7E+02 0.0094 25.6 9.7 93 206-311 122-234 (282)
71 2rir_A Dipicolinate synthase, 29.5 49 0.0017 30.5 4.5 82 226-312 170-266 (300)
72 4g2n_A D-isomer specific 2-hyd 29.5 1E+02 0.0035 29.4 6.9 93 205-311 27-121 (345)
73 4ehd_A Caspase-3; caspase, apo 28.9 51 0.0018 30.6 4.4 55 224-280 70-132 (277)
74 2nac_A NAD-dependent formate d 28.7 4.1E+02 0.014 25.7 12.5 131 226-382 204-358 (393)
75 3ezx_A MMCP 1, monomethylamine 28.7 86 0.0029 27.7 5.8 59 204-266 90-149 (215)
76 1i1q_B Anthranilate synthase c 28.3 50 0.0017 28.3 4.1 52 207-266 1-55 (192)
77 3rht_A (gatase1)-like protein; 28.2 31 0.0011 31.9 2.8 73 206-287 4-86 (259)
78 3qhp_A Type 1 capsular polysac 28.1 1.4E+02 0.0046 23.8 6.6 50 206-266 32-81 (166)
79 2q62_A ARSH; alpha/beta, flavo 28.1 1.7E+02 0.0058 26.4 7.8 57 205-265 33-104 (247)
80 2bfw_A GLGA glycogen synthase; 28.1 1.1E+02 0.0037 25.3 6.2 52 207-267 71-123 (200)
81 3ba1_A HPPR, hydroxyphenylpyru 27.9 3.8E+02 0.013 25.1 10.8 138 226-384 177-327 (333)
82 3gvp_A Adenosylhomocysteinase 27.7 56 0.0019 32.6 4.7 71 207-287 221-307 (435)
83 3iwt_A 178AA long hypothetical 27.7 43 0.0015 28.5 3.5 50 224-273 41-95 (178)
84 2fp3_A Caspase NC; apoptosis, 27.3 41 0.0014 31.9 3.6 56 223-281 84-153 (316)
85 1y5e_A Molybdenum cofactor bio 27.0 98 0.0034 26.1 5.7 68 205-273 12-86 (169)
86 3kbq_A Protein TA0487; structu 27.0 44 0.0015 28.9 3.4 69 206-274 3-77 (172)
87 4dio_A NAD(P) transhydrogenase 27.0 96 0.0033 30.5 6.2 55 228-284 205-309 (405)
88 3p2y_A Alanine dehydrogenase/p 26.9 68 0.0023 31.3 5.1 34 254-287 260-302 (381)
89 4e5n_A Thermostable phosphite 26.3 90 0.0031 29.5 5.8 81 226-311 13-94 (330)
90 3pwz_A Shikimate dehydrogenase 26.1 2E+02 0.0068 26.3 8.0 48 258-309 180-233 (272)
91 1l7d_A Nicotinamide nucleotide 25.3 2.9E+02 0.01 26.3 9.4 93 220-316 14-125 (384)
92 4e5v_A Putative THUA-like prot 25.3 2.3E+02 0.008 26.0 8.3 55 205-264 3-63 (281)
93 3h11_A CAsp8 and FADD-like apo 25.2 51 0.0017 30.6 3.7 65 206-281 43-119 (272)
94 1z0s_A Probable inorganic poly 24.5 1.5E+02 0.0053 27.4 6.9 88 205-307 28-122 (278)
95 4gud_A Imidazole glycerol phos 24.5 1.1E+02 0.0039 26.2 5.7 44 208-266 4-47 (211)
96 3pdi_B Nitrogenase MOFE cofact 24.1 48 0.0016 33.0 3.5 100 205-309 168-288 (458)
97 3pzy_A MOG; ssgcid, seattle st 23.8 60 0.002 27.5 3.6 68 205-273 6-80 (164)
98 3aek_B Light-independent proto 23.7 87 0.003 31.7 5.4 103 205-310 152-257 (525)
99 1pyo_A Caspase-2; apoptosis, c 23.6 63 0.0022 27.7 3.7 29 224-255 59-87 (167)
100 3f2v_A General stress protein 23.4 96 0.0033 26.9 5.0 40 226-265 20-64 (192)
101 3rfq_A Pterin-4-alpha-carbinol 22.9 53 0.0018 28.6 3.1 72 204-275 28-105 (185)
102 1ccw_A Protein (glutamate muta 22.5 1.1E+02 0.0039 24.7 5.0 54 206-263 3-58 (137)
103 2pbq_A Molybdenum cofactor bio 22.4 97 0.0033 26.5 4.7 69 205-273 4-82 (178)
104 3e4c_A Caspase-1; zymogen, inf 22.1 1.1E+02 0.0037 28.7 5.4 30 224-256 83-112 (302)
105 2f9f_A First mannosyl transfer 21.9 2.8E+02 0.0095 22.5 7.5 36 204-243 21-57 (177)
106 2d5c_A AROE, shikimate 5-dehyd 21.7 2E+02 0.0069 25.6 7.0 92 208-311 118-226 (263)
107 1uz5_A MOEA protein, 402AA lon 21.0 1.2E+02 0.0041 29.7 5.6 81 187-272 166-259 (402)
108 3on5_A BH1974 protein; structu 20.6 1E+02 0.0034 29.9 4.8 95 204-313 197-293 (362)
109 2yv5_A YJEQ protein; hydrolase 20.5 1.2E+02 0.004 28.0 5.3 72 205-276 110-186 (302)
110 2o4c_A Erythronate-4-phosphate 20.3 4.6E+02 0.016 25.2 9.6 144 207-383 117-281 (380)
111 2gk3_A Putative cytoplasmic pr 20.3 43 0.0015 30.5 2.0 63 205-267 9-85 (256)
112 3phh_A Shikimate dehydrogenase 20.1 1.8E+02 0.0062 26.7 6.4 48 259-311 172-228 (269)
113 3vue_A GBSS-I, granule-bound s 20.0 2.6E+02 0.0089 28.0 8.1 50 184-244 312-364 (536)
No 1
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=79.80 E-value=4.7 Score=38.13 Aligned_cols=73 Identities=15% Similarity=0.168 Sum_probs=54.7
Q ss_pred CCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeechhh-hhhhhccCCCcEE
Q 043548 205 TRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHGAA-LTHSLFLRPGSVF 283 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHGAg-Ltn~lFl~pgs~v 283 (385)
..-++++|.|.+..+ .-+..+|...|..|.+... .+.++++ .+.+|||+|+.-|+. +-..=|++||++|
T Consensus 160 ~Gk~vvVvGrs~iVG------~plA~lL~~~gAtVtv~hs-~T~~L~~---~~~~ADIVI~Avg~p~~I~~~~vk~GavV 229 (286)
T 4a5o_A 160 YGMDAVVVGASNIVG------RPMALELLLGGCTVTVTHR-FTRDLAD---HVSRADLVVVAAGKPGLVKGEWIKEGAIV 229 (286)
T ss_dssp TTCEEEEECTTSTTH------HHHHHHHHHTTCEEEEECT-TCSCHHH---HHHTCSEEEECCCCTTCBCGGGSCTTCEE
T ss_pred CCCEEEEECCCchhH------HHHHHHHHHCCCeEEEEeC-CCcCHHH---HhccCCEEEECCCCCCCCCHHHcCCCeEE
Confidence 345889999987422 4556677888999998854 3555654 578999999998876 6666677999999
Q ss_pred EEEe
Q 043548 284 VQVV 287 (385)
Q Consensus 284 iEi~ 287 (385)
|-+-
T Consensus 230 IDvg 233 (286)
T 4a5o_A 230 IDVG 233 (286)
T ss_dssp EECC
T ss_pred EEec
Confidence 9874
No 2
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=77.98 E-value=5.4 Score=37.50 Aligned_cols=71 Identities=18% Similarity=0.326 Sum_probs=53.5
Q ss_pred CCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeechhh-hhhhhccCCCcEEE
Q 043548 206 RPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHGAA-LTHSLFLRPGSVFV 284 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHGAg-Ltn~lFl~pgs~vi 284 (385)
.-++++|.|.+..+ .-+...|...|..|.+... .+.++++ .+.+|||+|+.=|+. +-..=|++||++||
T Consensus 150 Gk~vvVvG~s~iVG------~plA~lL~~~gAtVtv~~~-~t~~L~~---~~~~ADIVI~Avg~p~~I~~~~vk~GavVI 219 (276)
T 3ngx_A 150 ENTVTIVNRSPVVG------RPLSMMLLNRNYTVSVCHS-KTKDIGS---MTRSSKIVVVAVGRPGFLNREMVTPGSVVI 219 (276)
T ss_dssp SCEEEEECCCTTTH------HHHHHHHHHTTCEEEEECT-TCSCHHH---HHHHSSEEEECSSCTTCBCGGGCCTTCEEE
T ss_pred CCEEEEEcCChHHH------HHHHHHHHHCCCeEEEEeC-CcccHHH---hhccCCEEEECCCCCccccHhhccCCcEEE
Confidence 35889999876422 4566777888999998864 3556654 578999999998874 55566779999999
Q ss_pred EE
Q 043548 285 QV 286 (385)
Q Consensus 285 Ei 286 (385)
-+
T Consensus 220 Dv 221 (276)
T 3ngx_A 220 DV 221 (276)
T ss_dssp EC
T ss_pred Ee
Confidence 87
No 3
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=76.04 E-value=6.2 Score=37.27 Aligned_cols=73 Identities=14% Similarity=0.198 Sum_probs=53.7
Q ss_pred CCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeechhh-hhhhhccCCCcEE
Q 043548 205 TRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHGAA-LTHSLFLRPGSVF 283 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHGAg-Ltn~lFl~pgs~v 283 (385)
..-++++|.|.+..+ .-+..+|...|..|.+... .+.+++ +.+.+|||+|+.-|+. +-..=|++||++|
T Consensus 160 ~Gk~vvVIG~s~iVG------~p~A~lL~~~gAtVtv~hs-~t~~L~---~~~~~ADIVI~Avg~p~~I~~~~vk~GavV 229 (285)
T 3l07_A 160 EGAYAVVVGASNVVG------KPVSQLLLNAKATVTTCHR-FTTDLK---SHTTKADILIVAVGKPNFITADMVKEGAVV 229 (285)
T ss_dssp TTCEEEEECCCTTTH------HHHHHHHHHTTCEEEEECT-TCSSHH---HHHTTCSEEEECCCCTTCBCGGGSCTTCEE
T ss_pred CCCEEEEECCCchhH------HHHHHHHHHCCCeEEEEeC-CchhHH---HhcccCCEEEECCCCCCCCCHHHcCCCcEE
Confidence 345789999877422 4556678888999988853 245555 4578999999988875 5555577999999
Q ss_pred EEEe
Q 043548 284 VQVV 287 (385)
Q Consensus 284 iEi~ 287 (385)
|.+-
T Consensus 230 IDvg 233 (285)
T 3l07_A 230 IDVG 233 (285)
T ss_dssp EECC
T ss_pred EEec
Confidence 9873
No 4
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=75.93 E-value=6.6 Score=37.08 Aligned_cols=73 Identities=15% Similarity=0.221 Sum_probs=54.4
Q ss_pred CCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeechhh-hhhhhccCCCcEE
Q 043548 205 TRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHGAA-LTHSLFLRPGSVF 283 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHGAg-Ltn~lFl~pgs~v 283 (385)
..-++++|.|.+..+ .-+..+|...|..|.+... .+..++ +.+.+|||+|+.=|+. +-..=|++||++|
T Consensus 159 ~Gk~vvVvGrs~iVG------~p~A~lL~~~gAtVtv~h~-~t~~L~---~~~~~ADIVI~Avg~p~~I~~~~vk~GavV 228 (285)
T 3p2o_A 159 EGKDAVIIGASNIVG------RPMATMLLNAGATVSVCHI-KTKDLS---LYTRQADLIIVAAGCVNLLRSDMVKEGVIV 228 (285)
T ss_dssp TTCEEEEECCCTTTH------HHHHHHHHHTTCEEEEECT-TCSCHH---HHHTTCSEEEECSSCTTCBCGGGSCTTEEE
T ss_pred CCCEEEEECCCchHH------HHHHHHHHHCCCeEEEEeC-CchhHH---HHhhcCCEEEECCCCCCcCCHHHcCCCeEE
Confidence 345889999987422 4556778888999998864 245555 4578999999988875 5566677999999
Q ss_pred EEEe
Q 043548 284 VQVV 287 (385)
Q Consensus 284 iEi~ 287 (385)
|-+-
T Consensus 229 IDVg 232 (285)
T 3p2o_A 229 VDVG 232 (285)
T ss_dssp EECC
T ss_pred EEec
Confidence 9873
No 5
>3czx_A Putative N-acetylmuramoyl-L-alanine amidase; structural genomics, PSI, MCSG, protein structure initiative; 1.60A {Neisseria meningitidis MC58}
Probab=75.87 E-value=4.1 Score=35.70 Aligned_cols=47 Identities=23% Similarity=0.289 Sum_probs=36.9
Q ss_pred HHHHHHHHC-CCEEEEecCC-CCCCHHHHHHHHhcCCEEEeechhhhhh
Q 043548 227 EVKRVAEDT-GFEVTVFEPT-PKTSLRQAYALINSSHAMVGVHGAALTH 273 (385)
Q Consensus 227 ev~~~l~~~-gf~v~~~~~~-~~~s~~eq~~l~~~advlVGvHGAgLtn 273 (385)
.|.+.|++. |++|+..... ...++.+-+++.+.||++|+.|--+..|
T Consensus 36 ~l~~~L~~~~G~~V~~tR~~d~~~~L~~R~~~an~adlfISIH~Na~~~ 84 (182)
T 3czx_A 36 IVASILRNDYGLTVKTDGTGKGNMPLRDAVKLIRGSDVAIEFHTNAAAN 84 (182)
T ss_dssp HHHHHHHHHHCCCEEESCSSCCCCCHHHHHHHHHTCSEEEEECCBCCSS
T ss_pred HHHHHHhhcCCcEEEEecCCCccCCHHHHHHHhhCCCEEEEeccCCCCC
Confidence 344567778 9999876543 4578999999999999999999776654
No 6
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=74.84 E-value=3.2 Score=39.62 Aligned_cols=73 Identities=14% Similarity=0.248 Sum_probs=53.2
Q ss_pred CCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeechhh-hhhhhccCCCcEE
Q 043548 205 TRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHGAA-LTHSLFLRPGSVF 283 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHGAg-Ltn~lFl~pgs~v 283 (385)
..-++++|.|.+..+ .-+...|...|..|.+.... +.++ .+.+.+|||+|+.-|.. +-..=+++||++|
T Consensus 164 ~gk~vvVIG~s~iVG------~p~A~lL~~~gAtVtv~hs~-t~~L---~~~~~~ADIVI~Avg~p~~I~~~~vk~GavV 233 (301)
T 1a4i_A 164 AGRHAVVVGRSKIVG------APMHDLLLWNNATVTTCHSK-TAHL---DEEVNKGDILVVATGQPEMVKGEWIKPGAIV 233 (301)
T ss_dssp TTCEEEEECCCTTTH------HHHHHHHHHTTCEEEEECTT-CSSH---HHHHTTCSEEEECCCCTTCBCGGGSCTTCEE
T ss_pred CCCEEEEECCCchHH------HHHHHHHHhCCCeEEEEECC-cccH---HHHhccCCEEEECCCCcccCCHHHcCCCcEE
Confidence 445899999876422 33566777889999988532 3344 45678999999999986 5555567999999
Q ss_pred EEEe
Q 043548 284 VQVV 287 (385)
Q Consensus 284 iEi~ 287 (385)
|-+-
T Consensus 234 IDVg 237 (301)
T 1a4i_A 234 IDCG 237 (301)
T ss_dssp EECC
T ss_pred EEcc
Confidence 9873
No 7
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=74.11 E-value=9.7 Score=36.00 Aligned_cols=73 Identities=11% Similarity=0.146 Sum_probs=52.9
Q ss_pred CCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeechhh-hhhhhccCCCcEE
Q 043548 205 TRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHGAA-LTHSLFLRPGSVF 283 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHGAg-Ltn~lFl~pgs~v 283 (385)
..-++++|.|.+..+ .-+...|...|..|.+.... +.++ .+.+.+||++|+.=|+. +-..=+++||++|
T Consensus 158 ~gk~vvVIG~s~iVG------~p~A~lL~~~gAtVtv~hs~-t~~L---~~~~~~ADIVI~Avg~p~lI~~~~vk~GavV 227 (288)
T 1b0a_A 158 FGLNAVVIGASNIVG------RPMSMELLLAGCTTTVTHRF-TKNL---RHHVENADLLIVAVGKPGFIPGDWIKEGAIV 227 (288)
T ss_dssp TTCEEEEECCCTTTH------HHHHHHHHTTTCEEEEECSS-CSCH---HHHHHHCSEEEECSCCTTCBCTTTSCTTCEE
T ss_pred CCCEEEEECCChHHH------HHHHHHHHHCCCeEEEEeCC-chhH---HHHhccCCEEEECCCCcCcCCHHHcCCCcEE
Confidence 445889999876433 33556777789999988642 4444 45567999999999876 5555567999999
Q ss_pred EEEe
Q 043548 284 VQVV 287 (385)
Q Consensus 284 iEi~ 287 (385)
|-+-
T Consensus 228 IDVg 231 (288)
T 1b0a_A 228 IDVG 231 (288)
T ss_dssp EECC
T ss_pred EEcc
Confidence 9873
No 8
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=72.89 E-value=8.7 Score=36.53 Aligned_cols=75 Identities=13% Similarity=0.264 Sum_probs=53.8
Q ss_pred CCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeechhh-hhhhhccCCCcEE
Q 043548 205 TRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHGAA-LTHSLFLRPGSVF 283 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHGAg-Ltn~lFl~pgs~v 283 (385)
..-++++|.|.+..+ .-+..+|.+.|..|.+.... +.+++ ..+.+.+|||+|+.=|.. +-..=|++||++|
T Consensus 164 ~Gk~vvVIG~s~iVG------~p~A~lL~~~gAtVtv~~~~-T~~l~-l~~~~~~ADIVI~Avg~p~~I~~~~vk~GavV 235 (300)
T 4a26_A 164 AGKRAVVLGRSNIVG------APVAALLMKENATVTIVHSG-TSTED-MIDYLRTADIVIAAMGQPGYVKGEWIKEGAAV 235 (300)
T ss_dssp TTCEEEEECCCTTTH------HHHHHHHHHTTCEEEEECTT-SCHHH-HHHHHHTCSEEEECSCCTTCBCGGGSCTTCEE
T ss_pred CCCEEEEECCCchHH------HHHHHHHHHCCCeEEEEeCC-CCCch-hhhhhccCCEEEECCCCCCCCcHHhcCCCcEE
Confidence 345889999877422 45566778889999988532 33333 015789999999988875 5555678999999
Q ss_pred EEEe
Q 043548 284 VQVV 287 (385)
Q Consensus 284 iEi~ 287 (385)
|-+-
T Consensus 236 IDvg 239 (300)
T 4a26_A 236 VDVG 239 (300)
T ss_dssp EECC
T ss_pred EEEe
Confidence 9874
No 9
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=71.70 E-value=23 Score=33.69 Aligned_cols=94 Identities=16% Similarity=0.197 Sum_probs=59.9
Q ss_pred eEEEEEccCCCCcccccHHHHHHHHHH-CCCEEEEecCCCCCCHHHHHHHHhcCCEEEeechhhhhh---------hhcc
Q 043548 208 RLMLMSRRGGLGRVILNQVEVKRVAED-TGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHGAALTH---------SLFL 277 (385)
Q Consensus 208 rv~~isR~~~~~R~i~Ne~ev~~~l~~-~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHGAgLtn---------~lFl 277 (385)
++++++|+.. .....+++.+.+.+ .|.++...... +.++--+.+..+|+||..-.+|+.. .-++
T Consensus 180 ~V~i~nR~~~---~~~~a~~la~~~~~~~~~~~~~~~~~---~~~~l~~~l~~aDiIINaTp~Gm~~~~~~~p~~~~~~l 253 (315)
T 3tnl_A 180 EISIFNRKDD---FYANAEKTVEKINSKTDCKAQLFDIE---DHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADML 253 (315)
T ss_dssp EEEEEECSST---THHHHHHHHHHHHHHSSCEEEEEETT---CHHHHHHHHHTCSEEEECSSTTSTTSTTCCSCCCGGGC
T ss_pred EEEEEECCCc---hHHHHHHHHHHhhhhcCCceEEeccc---hHHHHHhhhcCCCEEEECccCCCCCCCCCCCCCcHHHc
Confidence 6777777632 23344555555544 36666554331 2333345678999999888877652 2246
Q ss_pred CCCcEEEEEeeCCccccccccHHHHHhhcCCcEE
Q 043548 278 RPGSVFVQVVPLGLEWVAEVCFGTSAKAMGLDYM 311 (385)
Q Consensus 278 ~pgs~viEi~P~g~~~~~~~~y~~~A~~~gl~Y~ 311 (385)
+++.+|++++-.- ..+.|-..|+..|.+..
T Consensus 254 ~~~~~V~DlvY~P----~~T~ll~~A~~~G~~~~ 283 (315)
T 3tnl_A 254 RPELIVSDVVYKP----TKTRLLEIAEEQGCQTL 283 (315)
T ss_dssp CTTCEEEESCCSS----SSCHHHHHHHHTTCEEE
T ss_pred CCCCEEEEeccCC----CCCHHHHHHHHCCCeEe
Confidence 8899999987321 35778899999998654
No 10
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=68.65 E-value=24 Score=33.52 Aligned_cols=72 Identities=21% Similarity=0.377 Sum_probs=52.9
Q ss_pred CCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccCCCcEE
Q 043548 205 TRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHG-AALTHSLFLRPGSVF 283 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHG-AgLtn~lFl~pgs~v 283 (385)
..-++++|.|....+| -+..+|.+.|..|.+... .+.++.+ ...+|||+|+.=| +++-..=|.+||++|
T Consensus 178 ~Gk~vvViGRS~iVGk------Pla~LL~~~~ATVTi~Hs-~T~dl~~---~~~~ADIvV~A~G~p~~i~~d~vk~GavV 247 (303)
T 4b4u_A 178 AGKHAVVVGRSAILGK------PMAMMLLQANATVTICHS-RTQNLPE---LVKQADIIVGAVGKAELIQKDWIKQGAVV 247 (303)
T ss_dssp TTCEEEEECCCTTTHH------HHHHHHHHTTCEEEEECT-TCSSHHH---HHHTCSEEEECSCSTTCBCGGGSCTTCEE
T ss_pred CCCEEEEEeccccccc------hHHHHHHhcCCEEEEecC-CCCCHHH---HhhcCCeEEeccCCCCccccccccCCCEE
Confidence 3457899998876444 345566777999988854 3566655 5679999998766 556666689999999
Q ss_pred EEE
Q 043548 284 VQV 286 (385)
Q Consensus 284 iEi 286 (385)
|-+
T Consensus 248 IDV 250 (303)
T 4b4u_A 248 VDA 250 (303)
T ss_dssp EEC
T ss_pred EEe
Confidence 985
No 11
>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}
Probab=65.17 E-value=65 Score=30.13 Aligned_cols=130 Identities=12% Similarity=0.115 Sum_probs=72.8
Q ss_pred HHHHHHHHHCCCEEEEecCCCCCCHH--------HHHHHHhcCCEEEeech--h---hhhh---hhccCCCcEEEEEeeC
Q 043548 226 VEVKRVAEDTGFEVTVFEPTPKTSLR--------QAYALINSSHAMVGVHG--A---ALTH---SLFLRPGSVFVQVVPL 289 (385)
Q Consensus 226 ~ev~~~l~~~gf~v~~~~~~~~~s~~--------eq~~l~~~advlVGvHG--A---gLtn---~lFl~pgs~viEi~P~ 289 (385)
..+++.++..|++|+..+........ +--+++..||+++-.-. . ++-| +--|+||+.+|-+---
T Consensus 155 ~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg 234 (307)
T 1wwk_A 155 YQVAKIANALGMNILLYDPYPNEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRG 234 (307)
T ss_dssp HHHHHHHHHTTCEEEEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCG
T ss_pred HHHHHHHHHCCCEEEEECCCCChhhHhhcCccccCHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCC
Confidence 45678888999999988764221100 11256789999886432 2 1221 2248999999977432
Q ss_pred CccccccccHHHHHh---hcCCcEEEEEecccccchhhhcCCCCccccCCccc---cCCCcchhhhhhhhcCCceEEchH
Q 043548 290 GLEWVAEVCFGTSAK---AMGLDYMEYKINAEESSLIEKYNKNDTVIKDPVAF---RGKSWSDAAMNIYLKEQNVKLDLF 363 (385)
Q Consensus 290 g~~~~~~~~y~~~A~---~~gl~Y~~y~~~~~essl~~~y~~d~~v~~dP~~~---~~~gw~~~~~~~yl~~Qdv~ldi~ 363 (385)
+. ..-..+++ .-++......+...|- .+.+||.++.|..+ |..++ -.+
T Consensus 235 ~~-----vd~~aL~~aL~~g~i~ga~lDv~~~eP-----~~~~~~L~~~~nviltPh~~~~----------------t~~ 288 (307)
T 1wwk_A 235 PV-----VDTNALVKALKEGWIAGAGLDVFEEEP-----LPKDHPLTKFDNVVLTPHIGAS----------------TVE 288 (307)
T ss_dssp GG-----BCHHHHHHHHHHTSSSEEEESCCSSSS-----CCTTCGGGGCTTEEECSSCTTC----------------BHH
T ss_pred cc-----cCHHHHHHHHHhCCCcEEEEecCCCCC-----CCCCChHHhCCCEEECCccccC----------------cHH
Confidence 21 12233332 2335544444433332 24577777776532 54343 134
Q ss_pred hHHHHHHHHHHHHHhhhh
Q 043548 364 RFREYLKKVYKKAKRFMD 381 (385)
Q Consensus 364 rF~~~L~~a~~~~~~~~~ 381 (385)
........+.+.+.+|+.
T Consensus 289 ~~~~~~~~~~~nl~~~~~ 306 (307)
T 1wwk_A 289 AQERAGVEVAEKVVKILK 306 (307)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 456677777888888764
No 12
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*
Probab=64.17 E-value=39 Score=32.00 Aligned_cols=94 Identities=15% Similarity=0.153 Sum_probs=60.1
Q ss_pred eEEEEEccCCCCcccccHHHHHHHHHH-CCCEEEEecCCCCCCHHHHHHHHhcCCEEEeechhhhh---h------hhcc
Q 043548 208 RLMLMSRRGGLGRVILNQVEVKRVAED-TGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHGAALT---H------SLFL 277 (385)
Q Consensus 208 rv~~isR~~~~~R~i~Ne~ev~~~l~~-~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHGAgLt---n------~lFl 277 (385)
++++++|+.. | ....+++.+.+.+ .|..+...+. .++.+-.+.+..+|+||..-.+||. . .-++
T Consensus 174 ~v~v~nRt~~--~-~~~a~~la~~~~~~~~~~v~~~~~---~~l~~~~~~l~~~DiIINaTp~Gm~~~~~~~~~~~~~~l 247 (312)
T 3t4e_A 174 EIKLFNRKDD--F-FEKAVAFAKRVNENTDCVVTVTDL---ADQHAFTEALASADILTNGTKVGMKPLENESLIGDVSLL 247 (312)
T ss_dssp EEEEEECSST--H-HHHHHHHHHHHHHHSSCEEEEEET---TCHHHHHHHHHHCSEEEECSSTTSTTSTTCCSCCCGGGS
T ss_pred EEEEEECCCc--h-HHHHHHHHHHhhhccCcceEEech---HhhhhhHhhccCceEEEECCcCCCCCCCCCcccCCHHHc
Confidence 6777777643 2 3344555555544 4666655543 2332224567899999988888872 1 1246
Q ss_pred CCCcEEEEEeeCCccccccccHHHHHhhcCCcEE
Q 043548 278 RPGSVFVQVVPLGLEWVAEVCFGTSAKAMGLDYM 311 (385)
Q Consensus 278 ~pgs~viEi~P~g~~~~~~~~y~~~A~~~gl~Y~ 311 (385)
+++.+|++++-.- ..+.|-..|+..|.+..
T Consensus 248 ~~~~~v~D~vY~P----~~T~ll~~A~~~G~~~~ 277 (312)
T 3t4e_A 248 RPELLVTECVYNP----HMTKLLQQAQQAGCKTI 277 (312)
T ss_dssp CTTCEEEECCCSS----SSCHHHHHHHHTTCEEE
T ss_pred CCCCEEEEeccCC----CCCHHHHHHHHCCCeEE
Confidence 7889999987321 35788899999998654
No 13
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}
Probab=62.67 E-value=69 Score=30.35 Aligned_cols=136 Identities=11% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCEEEEecCCCCCC--------HHHHHHHHhcCCEEEeech-hhhhhhhc-------cCCCcEEEEEeeC
Q 043548 226 VEVKRVAEDTGFEVTVFEPTPKTS--------LRQAYALINSSHAMVGVHG-AALTHSLF-------LRPGSVFVQVVPL 289 (385)
Q Consensus 226 ~ev~~~l~~~gf~v~~~~~~~~~s--------~~eq~~l~~~advlVGvHG-AgLtn~lF-------l~pgs~viEi~P~ 289 (385)
.++++.|+.+|++|...+...... ..+--+++..||+++-.=- ..-|.-++ |+||+.+|-+---
T Consensus 150 ~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG 229 (324)
T 3evt_A 150 QSLAAKASALGMHVIGVNTTGHPADHFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRG 229 (324)
T ss_dssp HHHHHHHHHTTCEEEEEESSCCCCTTCSEEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCG
T ss_pred HHHHHHHHhCCCEEEEECCCcchhHhHhhccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCC
Q ss_pred CccccccccHHHHHhhcCCcEEEEEecccccchhhhcCCCCccccCCccc---cCCCcchhhhhhhhcCCceEEchHhHH
Q 043548 290 GLEWVAEVCFGTSAKAMGLDYMEYKINAEESSLIEKYNKNDTVIKDPVAF---RGKSWSDAAMNIYLKEQNVKLDLFRFR 366 (385)
Q Consensus 290 g~~~~~~~~y~~~A~~~gl~Y~~y~~~~~essl~~~y~~d~~v~~dP~~~---~~~gw~~~~~~~yl~~Qdv~ldi~rF~ 366 (385)
+. .....-...-+.-++......+...|- .+.+||.+.-|..+ |-.|+ -.+...
T Consensus 230 ~~--vd~~aL~~aL~~g~i~gA~lDV~~~EP-----l~~~~pL~~~~nvilTPHia~~----------------t~~~~~ 286 (324)
T 3evt_A 230 PA--VDTTALMTALDHHQLSMAALDVTEPEP-----LPTDHPLWQRDDVLITPHISGQ----------------IAHFRA 286 (324)
T ss_dssp GG--BCHHHHHHHHHTTSCSEEEESSCSSSS-----CCTTCGGGGCSSEEECCSCTTC----------------CCCHHH
T ss_pred hh--hhHHHHHHHHHhCCceEEEeCCCCCCC-----CCCCChhhcCCCEEEcCccccC----------------hHHHHH
Q ss_pred HHHHHHHHHHHhhhhcCC
Q 043548 367 EYLKKVYKKAKRFMDKGE 384 (385)
Q Consensus 367 ~~L~~a~~~~~~~~~~~~ 384 (385)
.....+.+.+.+|+..++
T Consensus 287 ~~~~~~~~nl~~~l~~~~ 304 (324)
T 3evt_A 287 TVFPIFAANFAQFVKDGT 304 (324)
T ss_dssp HHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCCC
No 14
>1jwq_A N-acetylmuramoyl-L-alanine amidase CWLV; open alpha-beta-alpha, hydrolase; 1.80A {Paenibacillus polymyxa} SCOP: c.56.5.6
Probab=60.62 E-value=13 Score=32.26 Aligned_cols=47 Identities=15% Similarity=0.273 Sum_probs=35.5
Q ss_pred HHHHHHHHC-CCEEEEecCC-CCCCHHHHHHHHh--cCCEEEeechhhhhh
Q 043548 227 EVKRVAEDT-GFEVTVFEPT-PKTSLRQAYALIN--SSHAMVGVHGAALTH 273 (385)
Q Consensus 227 ev~~~l~~~-gf~v~~~~~~-~~~s~~eq~~l~~--~advlVGvHGAgLtn 273 (385)
.|.+.|++. |++|+..... ...++.+-+++.+ .||++|+.|--+..|
T Consensus 36 ~l~~~L~~~~G~~V~ltR~~D~~~~L~~R~~~an~~~adlfiSiH~Na~~~ 86 (179)
T 1jwq_A 36 KVESILKQNPKLEVVLTRSDDTFLELKQRVKVAENLKANVFVSIHANSSGS 86 (179)
T ss_dssp HHHHHHHTCTTEEEEESCSSSCCCCHHHHHHHHHHTTCSEEEEEEEECCSS
T ss_pred HHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHhhCCCEEEEEccCCCCC
Confidence 445667778 9999866433 4578999999887 699999999766543
No 15
>3qay_A Endolysin; amidase A/B fold, lyase; 2.00A {Clostridium phage PHICD27}
Probab=60.14 E-value=16 Score=31.69 Aligned_cols=44 Identities=16% Similarity=0.217 Sum_probs=29.7
Q ss_pred HHHHHHHCCCEE-EEecCCCC-C----CHHHHHHHHhc--CCEEEeechhhh
Q 043548 228 VKRVAEDTGFEV-TVFEPTPK-T----SLRQAYALINS--SHAMVGVHGAAL 271 (385)
Q Consensus 228 v~~~l~~~gf~v-~~~~~~~~-~----s~~eq~~l~~~--advlVGvHGAgL 271 (385)
|.+.|++.|++| +++....+ . ++.+-+++.++ ||++|+.|--+.
T Consensus 38 l~~~L~~~G~~V~v~ltR~d~~~~~~~~L~~R~~~An~~~aDlfISIH~Na~ 89 (180)
T 3qay_A 38 LADTFRKEGHKVDVIICPEKQFKTKNEEKSYKIPRVNSGGYDLLIELHLNAS 89 (180)
T ss_dssp HHHHHHHTTCEEEEECCCSSCCSSTTHHHHHHHHHHHHSCCSEEEEEEEECS
T ss_pred HHHHHHhcCCcceEEECCCCCccccccCHHHHHHHHHhcCCCEEEEeeeCCC
Confidence 345667779996 33322212 2 48888888865 999999997664
No 16
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Probab=57.55 E-value=90 Score=29.20 Aligned_cols=132 Identities=14% Similarity=0.086 Sum_probs=73.8
Q ss_pred HHHHHHHHHCCCEEEEecCCCCC---CHHHHHHHHhcCCEEEeec--hh---hhh---hhhccCCCcEEEEEeeCCcccc
Q 043548 226 VEVKRVAEDTGFEVTVFEPTPKT---SLRQAYALINSSHAMVGVH--GA---ALT---HSLFLRPGSVFVQVVPLGLEWV 294 (385)
Q Consensus 226 ~ev~~~l~~~gf~v~~~~~~~~~---s~~eq~~l~~~advlVGvH--GA---gLt---n~lFl~pgs~viEi~P~g~~~~ 294 (385)
..+.+.++..|++|...+..... ...+--+++..||+++-.= .+ ++- .+-.|+||+.+|-+---+.
T Consensus 157 ~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~--- 233 (311)
T 2cuk_A 157 QAVAKRALAFGMRVVYHARTPKPLPYPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGAL--- 233 (311)
T ss_dssp HHHHHHHHHTTCEEEEECSSCCSSSSCBCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGG---
T ss_pred HHHHHHHHHCCCEEEEECCCCcccccccCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCc---
Confidence 45678888999999988754221 1112234778999988642 11 111 1225899999997754221
Q ss_pred ccccHHHHHhhcC--CcEEEEEecccccchhhhcCCCCccccCCccc---cCCCcchhhhhhhhcCCceEEchHhHHHHH
Q 043548 295 AEVCFGTSAKAMG--LDYMEYKINAEESSLIEKYNKNDTVIKDPVAF---RGKSWSDAAMNIYLKEQNVKLDLFRFREYL 369 (385)
Q Consensus 295 ~~~~y~~~A~~~g--l~Y~~y~~~~~essl~~~y~~d~~v~~dP~~~---~~~gw~~~~~~~yl~~Qdv~ldi~rF~~~L 369 (385)
..-..+++.+. +......+...|- .+.+||.+..|..+ |..++ -.+......
T Consensus 234 --vd~~aL~~aL~g~i~ga~lDv~~~eP-----~~~~~~L~~~~nviltPh~~~~----------------t~~~~~~~~ 290 (311)
T 2cuk_A 234 --VDTEALVEALRGHLFGAGLDVTDPEP-----LPPGHPLYALPNAVITPHIGSA----------------GRTTRERMA 290 (311)
T ss_dssp --BCHHHHHHHHTTTSSEEEESSCSSSS-----CCTTSGGGGCTTEEECCSCTTC----------------BHHHHHHHH
T ss_pred --cCHHHHHHHHhCcCCEEEEeeCCCCC-----CCCCChhhhCCCEEECCcCCCC----------------CHHHHHHHH
Confidence 12234444443 3333333332221 14466776666532 54333 134456777
Q ss_pred HHHHHHHHhhhhcC
Q 043548 370 KKVYKKAKRFMDKG 383 (385)
Q Consensus 370 ~~a~~~~~~~~~~~ 383 (385)
..+.+.+.+|+..+
T Consensus 291 ~~~~~nl~~~~~g~ 304 (311)
T 2cuk_A 291 EVAVENLLAVLEGR 304 (311)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCC
Confidence 78888888887643
No 17
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=57.02 E-value=8.6 Score=36.22 Aligned_cols=72 Identities=19% Similarity=0.295 Sum_probs=51.3
Q ss_pred CCCeEEEEEccCCCCcccccHHHHHHHHHHC--CCEEEEecCCCCCCHHHHHHHHhcCCEEEeechhh-hhhhhccCCCc
Q 043548 205 TRPRLMLMSRRGGLGRVILNQVEVKRVAEDT--GFEVTVFEPTPKTSLRQAYALINSSHAMVGVHGAA-LTHSLFLRPGS 281 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~--gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHGAg-Ltn~lFl~pgs 281 (385)
..-++++|.|.+..+ .-+...|... |..|.+.... +. +..+.+.+|||+|+.=|+. +-..=+++||+
T Consensus 157 ~gk~vvVvG~s~iVG------~p~A~lL~~~g~~atVtv~h~~-t~---~L~~~~~~ADIVI~Avg~p~~I~~~~vk~Ga 226 (281)
T 2c2x_A 157 AGAHVVVIGRGVTVG------RPLGLLLTRRSENATVTLCHTG-TR---DLPALTRQADIVVAAVGVAHLLTADMVRPGA 226 (281)
T ss_dssp TTCEEEEECCCTTTH------HHHHHHHTSTTTCCEEEEECTT-CS---CHHHHHTTCSEEEECSCCTTCBCGGGSCTTC
T ss_pred CCCEEEEECCCcHHH------HHHHHHHhcCCCCCEEEEEECc-hh---HHHHHHhhCCEEEECCCCCcccCHHHcCCCc
Confidence 345889999876422 2355566677 7888887532 33 3445678999999999976 65555679999
Q ss_pred EEEEE
Q 043548 282 VFVQV 286 (385)
Q Consensus 282 ~viEi 286 (385)
+||-+
T Consensus 227 vVIDV 231 (281)
T 2c2x_A 227 AVIDV 231 (281)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 99987
No 18
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=56.47 E-value=19 Score=31.59 Aligned_cols=39 Identities=8% Similarity=0.114 Sum_probs=31.6
Q ss_pred HHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEe
Q 043548 227 EVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVG 265 (385)
Q Consensus 227 ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVG 265 (385)
++++.+++.|.+|.+++..+..++.+..+.+..||.||=
T Consensus 38 ~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~AD~iV~ 76 (204)
T 2amj_A 38 VADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWADVVIW 76 (204)
T ss_dssp HHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHcCCEEEEEeCCccccHHHHHHHHHhCCEEEE
Confidence 455566667999988887766789999999999999873
No 19
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}
Probab=55.80 E-value=50 Score=30.87 Aligned_cols=129 Identities=11% Similarity=-0.006 Sum_probs=74.1
Q ss_pred HHHHHHHHHCCCEEEEecCCCCC-----CHHHHHHHHhcCCEEEeech--hh---hh---hhhccCCCcEEEEEeeCCcc
Q 043548 226 VEVKRVAEDTGFEVTVFEPTPKT-----SLRQAYALINSSHAMVGVHG--AA---LT---HSLFLRPGSVFVQVVPLGLE 292 (385)
Q Consensus 226 ~ev~~~l~~~gf~v~~~~~~~~~-----s~~eq~~l~~~advlVGvHG--Ag---Lt---n~lFl~pgs~viEi~P~g~~ 292 (385)
..+++.|+.+|++|...+..... ...+--+++..||+++-.=- .. +- .+-.|+||+.+|-+---+.
T Consensus 135 ~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~- 213 (290)
T 3gvx_A 135 RRVAHLAKAFGMRVIAYTRSSVDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADV- 213 (290)
T ss_dssp HHHHHHHHHHTCEEEEECSSCCCTTCSEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGG-
T ss_pred HHHHHHHHhhCcEEEEEeccccccccccccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcc-
Confidence 46778889999999988754211 01123356789999875332 11 11 2234899999997642221
Q ss_pred ccccccHHHHHh---hcCCcEEEEEecccccchhhhcCCCCccccCCcc---ccCCCcchhhhhhhhcCCceEEchHhHH
Q 043548 293 WVAEVCFGTSAK---AMGLDYMEYKINAEESSLIEKYNKNDTVIKDPVA---FRGKSWSDAAMNIYLKEQNVKLDLFRFR 366 (385)
Q Consensus 293 ~~~~~~y~~~A~---~~gl~Y~~y~~~~~essl~~~y~~d~~v~~dP~~---~~~~gw~~~~~~~yl~~Qdv~ldi~rF~ 366 (385)
..-..+++ .-++.+....+...|.- ||.+..|.. .|-.||. ..+.+.
T Consensus 214 ----vd~~aL~~aL~~g~i~ga~lDV~~~EP~--------~pL~~~~nvilTPHiag~~---------------t~e~~~ 266 (290)
T 3gvx_A 214 ----VSKPDMIGFLKERSDVWYLSDVWWNEPE--------ITETNLRNAILSPHVAGGM---------------SGEIMD 266 (290)
T ss_dssp ----BCHHHHHHHHHHCTTCEEEESCCTTTTS--------CCSCCCSSEEECCSCSSCB---------------TTBCCH
T ss_pred ----cCCcchhhhhhhccceEEeeccccCCcc--------cchhhhhhhhcCccccCCc---------------cchHHH
Confidence 22233333 34577776666544431 555555542 2555452 123345
Q ss_pred HHHHHHHHHHHhhhhc
Q 043548 367 EYLKKVYKKAKRFMDK 382 (385)
Q Consensus 367 ~~L~~a~~~~~~~~~~ 382 (385)
...+.+.+.+++|+.-
T Consensus 267 ~~~~~~~~ni~~~~~~ 282 (290)
T 3gvx_A 267 IAIQLAFENVRNFFEG 282 (290)
T ss_dssp HHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhhhcC
Confidence 6777888888888754
No 20
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*
Probab=55.77 E-value=26 Score=32.64 Aligned_cols=94 Identities=13% Similarity=0.070 Sum_probs=59.1
Q ss_pred CeEEEEEccCCCCcccccHHHHHHHHHHCCC-EEEEecCCC-----------CCCHHHHHHHHhcCCEEEeechhhhhhh
Q 043548 207 PRLMLMSRRGGLGRVILNQVEVKRVAEDTGF-EVTVFEPTP-----------KTSLRQAYALINSSHAMVGVHGAALTHS 274 (385)
Q Consensus 207 prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf-~v~~~~~~~-----------~~s~~eq~~l~~~advlVGvHGAgLtn~ 274 (385)
.+++++.-.+. -..++..|.+.|. +|.+.+-.. ..++.+..+.+..+|++|..-.+|+..-
T Consensus 118 k~vlvlGaGg~-------g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~ 190 (277)
T 3don_A 118 AYILILGAGGA-------SKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGN 190 (277)
T ss_dssp CCEEEECCSHH-------HHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC------
T ss_pred CEEEEECCcHH-------HHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCC
Confidence 35677764332 2456677788888 777665321 1246665566889999998888886432
Q ss_pred -------hccCCCcEEEEEeeCCccccccccHHHHHhhcCCcEE
Q 043548 275 -------LFLRPGSVFVQVVPLGLEWVAEVCFGTSAKAMGLDYM 311 (385)
Q Consensus 275 -------lFl~pgs~viEi~P~g~~~~~~~~y~~~A~~~gl~Y~ 311 (385)
-+++++++|+.++-. + ..+.|...|+..|.+..
T Consensus 191 ~~~~l~~~~l~~~~~V~D~vY~---P-~~T~ll~~A~~~G~~~~ 230 (277)
T 3don_A 191 TDSVISLNRLASHTLVSDIVYN---P-YKTPILIEAEQRGNPIY 230 (277)
T ss_dssp -CCSSCCTTCCSSCEEEESCCS---S-SSCHHHHHHHHTTCCEE
T ss_pred CcCCCCHHHcCCCCEEEEecCC---C-CCCHHHHHHHHCcCEEe
Confidence 246889999998621 1 23568888999998754
No 21
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=54.91 E-value=64 Score=29.91 Aligned_cols=82 Identities=10% Similarity=0.138 Sum_probs=50.7
Q ss_pred EEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHH-hcCCEEEeechhhhhh----hhccCCCcEE
Q 043548 209 LMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALI-NSSHAMVGVHGAALTH----SLFLRPGSVF 283 (385)
Q Consensus 209 v~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~-~~advlVGvHGAgLtn----~lFl~pgs~v 283 (385)
++|++-....++...-.+++.+.|++.|.++.+..........++++.+ ..+|.+|.+=|=|--| .+.-.+...-
T Consensus 12 ~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~~~d~vv~~GGDGTl~~v~~~l~~~~~~~~ 91 (304)
T 3s40_A 12 LLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFASKVDLIIVFGGDGTVFECTNGLAPLEIRPT 91 (304)
T ss_dssp EEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTTTCSEEEEEECHHHHHHHHHHHTTCSSCCE
T ss_pred EEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhcCCCEEEEEccchHHHHHHHHHhhCCCCCc
Confidence 4445544332332223467888899999888766543334455555443 4789999999988555 4433233456
Q ss_pred EEEeeCC
Q 043548 284 VQVVPLG 290 (385)
Q Consensus 284 iEi~P~g 290 (385)
+=++|.|
T Consensus 92 l~iiP~G 98 (304)
T 3s40_A 92 LAIIPGG 98 (304)
T ss_dssp EEEEECS
T ss_pred EEEecCC
Confidence 7789998
No 22
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A
Probab=54.40 E-value=1.3e+02 Score=28.15 Aligned_cols=134 Identities=13% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCEEEEecCCCC--------CCHHHHHHHHhcCCEEEeech-hhhhhhhc-------cCCCcEEEEEeeC
Q 043548 226 VEVKRVAEDTGFEVTVFEPTPK--------TSLRQAYALINSSHAMVGVHG-AALTHSLF-------LRPGSVFVQVVPL 289 (385)
Q Consensus 226 ~ev~~~l~~~gf~v~~~~~~~~--------~s~~eq~~l~~~advlVGvHG-AgLtn~lF-------l~pgs~viEi~P~ 289 (385)
..+.+.++.+|++|+..+.... ....+--+++..||+++-.-- ..-|.-++ |+||+.+|-+---
T Consensus 152 ~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG 231 (315)
T 3pp8_A 152 AKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARG 231 (315)
T ss_dssp HHHHHHHHTTTCCEEEEESSCCCCTTCEEEESHHHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCG
T ss_pred HHHHHHHHHCCCEEEEEcCCchhhhhhhhhcccCCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCC
Q ss_pred CccccccccHHHHHhhcCCcEEEEEecccccchhhhcCCCCccccCCccc---cCCCcchhhhhhhhcCCceEEchHhHH
Q 043548 290 GLEWVAEVCFGTSAKAMGLDYMEYKINAEESSLIEKYNKNDTVIKDPVAF---RGKSWSDAAMNIYLKEQNVKLDLFRFR 366 (385)
Q Consensus 290 g~~~~~~~~y~~~A~~~gl~Y~~y~~~~~essl~~~y~~d~~v~~dP~~~---~~~gw~~~~~~~yl~~Qdv~ldi~rF~ 366 (385)
+. .....-...-+.-.+......+..+|- .+.+||.+..|..+ |-.|+ +.-.
T Consensus 232 ~~--vd~~aL~~aL~~g~i~gA~lDV~~~EP-----l~~~~pL~~~~nvilTPHia~~------------------t~~~ 286 (315)
T 3pp8_A 232 VH--VQEADLLAALDSGKLKGAMLDVFSQEP-----LPQESPLWRHPRVAMTPHIAAV------------------TRPA 286 (315)
T ss_dssp GG--BCHHHHHHHHHHTSEEEEEESCCSSSS-----CCTTCGGGGCTTEEECSSCSSC------------------CCHH
T ss_pred hh--hhHHHHHHHHHhCCccEEEcCCCCCCC-----CCCCChhhcCCCEEECCCCCcc------------------cHHH
Q ss_pred HHHHHHHHHHHhhhhcCC
Q 043548 367 EYLKKVYKKAKRFMDKGE 384 (385)
Q Consensus 367 ~~L~~a~~~~~~~~~~~~ 384 (385)
.....+.+.+.+|+.-++
T Consensus 287 ~~~~~~~~ni~~~~~G~~ 304 (315)
T 3pp8_A 287 EAIDYISRTITQLEKGEP 304 (315)
T ss_dssp HHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHcCCC
No 23
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*
Probab=53.90 E-value=15 Score=35.24 Aligned_cols=76 Identities=11% Similarity=0.116 Sum_probs=52.2
Q ss_pred CCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCC-------------CCCC--------HHHHHHHHhcCCEE
Q 043548 205 TRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPT-------------PKTS--------LRQAYALINSSHAM 263 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~-------------~~~s--------~~eq~~l~~~advl 263 (385)
..-++++|.|....+ .-+...|...|..|.+.+-. ...+ ..+--+.+.+|||+
T Consensus 176 ~gk~vvVIG~G~iVG------~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIV 249 (320)
T 1edz_A 176 YGKKCIVINRSEIVG------RPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVV 249 (320)
T ss_dssp TTCEEEEECCCTTTH------HHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEE
T ss_pred CCCEEEEECCCcchH------HHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEE
Confidence 445889999875322 23556677789888877421 0022 26677889999999
Q ss_pred Eeechhh--hhhhhccCCCcEEEEE
Q 043548 264 VGVHGAA--LTHSLFLRPGSVFVQV 286 (385)
Q Consensus 264 VGvHGAg--Ltn~lFl~pgs~viEi 286 (385)
|+.=|+. +-..=+++||++||-+
T Consensus 250 IsAtg~p~~vI~~e~vk~GavVIDV 274 (320)
T 1edz_A 250 ITGVPSENYKFPTEYIKEGAVCINF 274 (320)
T ss_dssp EECCCCTTCCBCTTTSCTTEEEEEC
T ss_pred EECCCCCcceeCHHHcCCCeEEEEc
Confidence 9999986 2333446899999977
No 24
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}
Probab=53.87 E-value=97 Score=29.66 Aligned_cols=134 Identities=13% Similarity=0.127 Sum_probs=76.2
Q ss_pred HHHHHHHHHCCCEEEEecCCCC--------CCH-HHHHHHHhcCCEEEeec--hh---hhhh---hhccCCCcEEEEEee
Q 043548 226 VEVKRVAEDTGFEVTVFEPTPK--------TSL-RQAYALINSSHAMVGVH--GA---ALTH---SLFLRPGSVFVQVVP 288 (385)
Q Consensus 226 ~ev~~~l~~~gf~v~~~~~~~~--------~s~-~eq~~l~~~advlVGvH--GA---gLtn---~lFl~pgs~viEi~P 288 (385)
..+++.++.+|++|+..+.... ... .+--+++.+||+++-.= .. ++-| +--|+||+.+|-+--
T Consensus 173 ~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR 252 (352)
T 3gg9_A 173 QLVAGYGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSR 252 (352)
T ss_dssp HHHHHHHHHTTCEEEEECSHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSC
T ss_pred HHHHHHHHhCCCEEEEECCCCCHHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCC
Confidence 4677888999999998764210 000 02235678999987532 11 2211 223899999998753
Q ss_pred CCccccccccHHHHHhhcCCcEEEEEecccccchhhhcCCCCccccCCcc---ccCCCcchhhhhhhhcCCceEEchHhH
Q 043548 289 LGLEWVAEVCFGTSAKAMGLDYMEYKINAEESSLIEKYNKNDTVIKDPVA---FRGKSWSDAAMNIYLKEQNVKLDLFRF 365 (385)
Q Consensus 289 ~g~~~~~~~~y~~~A~~~gl~Y~~y~~~~~essl~~~y~~d~~v~~dP~~---~~~~gw~~~~~~~yl~~Qdv~ldi~rF 365 (385)
-+. .....-...-+.-++......+-.+|- .+.+||.+.-|.. .|- ||. -.+.+
T Consensus 253 g~~--vd~~aL~~aL~~g~i~gA~lDV~~~EP-----l~~~~pL~~~~nvilTPHi-a~~---------------t~e~~ 309 (352)
T 3gg9_A 253 AEL--VEENGMVTALNRGRPGMAAIDVFETEP-----ILQGHTLLRMENCICTPHI-GYV---------------ERESY 309 (352)
T ss_dssp GGG--BCTTHHHHHHHHTSSSEEEECCCSSSC-----CCSCCGGGGCTTEEECCSC-TTC---------------BHHHH
T ss_pred chh--hcHHHHHHHHHhCCccEEEecccCCCC-----CCCCChhhcCCCEEECCCC-CCC---------------CHHHH
Confidence 222 122222222234456666666655543 3467877776653 254 441 12445
Q ss_pred HHHHHHHHHHHHhhhhc
Q 043548 366 REYLKKVYKKAKRFMDK 382 (385)
Q Consensus 366 ~~~L~~a~~~~~~~~~~ 382 (385)
......+++.+++|+..
T Consensus 310 ~~~~~~~~~ni~~~~~G 326 (352)
T 3gg9_A 310 EMYFGIAFQNILDILQG 326 (352)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 66777778888888753
No 25
>3ne8_A N-acetylmuramoyl-L-alanine amidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.24A {Bartonella henselae}
Probab=53.80 E-value=20 Score=32.56 Aligned_cols=45 Identities=7% Similarity=0.084 Sum_probs=33.8
Q ss_pred HHHHHHCC-CEEEEecCC-CCCCHHHHHHHHh--cCCEEEeechhhhhh
Q 043548 229 KRVAEDTG-FEVTVFEPT-PKTSLRQAYALIN--SSHAMVGVHGAALTH 273 (385)
Q Consensus 229 ~~~l~~~g-f~v~~~~~~-~~~s~~eq~~l~~--~advlVGvHGAgLtn 273 (385)
.+.|++.| ++|+..... ...++.+-+++.+ .||++|+.|--+..+
T Consensus 40 ~~~L~~~g~~~V~~tR~~D~~~~l~~R~~~An~~~adlfiSiH~Na~~~ 88 (234)
T 3ne8_A 40 RDELQKGSHTIVALTRDSDIFLRLSERVKKAQEFDADLFISIHADTIDV 88 (234)
T ss_dssp HHHHHHSSSEEEEESCSSSCCCCHHHHHHHHHHTTCSEEEEEECCCCSC
T ss_pred HHHHHhCCCcEEEEeCCCCCcCCHHHHHHHHHhhCCCEEEEEecCCCCC
Confidence 34566677 998875432 4578999999987 799999999776554
No 26
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}
Probab=51.99 E-value=1.1e+02 Score=28.83 Aligned_cols=134 Identities=15% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCEEEEecCCCC--------CCHHHHHHHHhcCCEEEeechhh------hhhhhc--cCCCcEEEEEeeC
Q 043548 226 VEVKRVAEDTGFEVTVFEPTPK--------TSLRQAYALINSSHAMVGVHGAA------LTHSLF--LRPGSVFVQVVPL 289 (385)
Q Consensus 226 ~ev~~~l~~~gf~v~~~~~~~~--------~s~~eq~~l~~~advlVGvHGAg------Ltn~lF--l~pgs~viEi~P~ 289 (385)
..+.+.|+.+|++|...+.... ....+--+++..||+++-.--.. +..-.| |+||+.+|-+---
T Consensus 153 ~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG 232 (324)
T 3hg7_A 153 QHIAHTGKHFGMKVLGVSRSGRERAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRG 232 (324)
T ss_dssp HHHHHHHHHTTCEEEEECSSCCCCTTCSEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCG
T ss_pred HHHHHHHHhCCCEEEEEcCChHHhhhhhcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCc
Q ss_pred CccccccccHHHHHhhcCCcEEEEEecccccchhhhcCCCCccccCCccc---cCCCcchhhhhhhhcCCceEEchHhHH
Q 043548 290 GLEWVAEVCFGTSAKAMGLDYMEYKINAEESSLIEKYNKNDTVIKDPVAF---RGKSWSDAAMNIYLKEQNVKLDLFRFR 366 (385)
Q Consensus 290 g~~~~~~~~y~~~A~~~gl~Y~~y~~~~~essl~~~y~~d~~v~~dP~~~---~~~gw~~~~~~~yl~~Qdv~ldi~rF~ 366 (385)
+. .....-...-+.-++......+-..|- .+.+||.+.-|..+ |-.|+ ..-.
T Consensus 233 ~~--vde~aL~~aL~~g~i~ga~lDV~~~EP-----l~~~~pL~~~~nvilTPHia~~------------------t~~~ 287 (324)
T 3hg7_A 233 NA--INEGDLLTALRTGKLGMAVLDVFEQEP-----LPADSPLWGQPNLIITPHNSAY------------------SFPD 287 (324)
T ss_dssp GG--BCHHHHHHHHHTTSSSEEEESCCSSSS-----CCTTCTTTTCTTEEECCSCSSC------------------CCHH
T ss_pred hh--hCHHHHHHHHHcCCceEEEeccCCCCC-----CCCCChhhcCCCEEEeCCCccc------------------cHHH
Q ss_pred HHHHHHHHHHHhhhhcCC
Q 043548 367 EYLKKVYKKAKRFMDKGE 384 (385)
Q Consensus 367 ~~L~~a~~~~~~~~~~~~ 384 (385)
.....+.+.+.+|+..+.
T Consensus 288 ~~~~~~~~nl~~~~~G~~ 305 (324)
T 3hg7_A 288 DVAQIFVRNYIRFIDGQP 305 (324)
T ss_dssp HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHcCCC
No 27
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=50.99 E-value=19 Score=32.36 Aligned_cols=60 Identities=7% Similarity=0.091 Sum_probs=40.7
Q ss_pred CCeEEEEEccCCC--CcccccH---HHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEe
Q 043548 206 RPRLMLMSRRGGL--GRVILNQ---VEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVG 265 (385)
Q Consensus 206 ~prv~~isR~~~~--~R~i~Ne---~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVG 265 (385)
-.++++|.=.... +..-.|. +++++.+++.|.+|.+.+..+..++.+..+.+..||+||=
T Consensus 25 M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~~aD~iv~ 89 (218)
T 3rpe_A 25 MSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQGYDIESEIENYLWADTIIY 89 (218)
T ss_dssp CCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHHHCSEEEE
T ss_pred CcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECCCccCHHHHHHHHHhCCEEEE
Confidence 3467777633210 0112332 3556667778999988887777889999999999999874
No 28
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=49.84 E-value=1.6e+02 Score=28.96 Aligned_cols=136 Identities=14% Similarity=0.050 Sum_probs=74.7
Q ss_pred HHHHHHHHHCCCEEEEecCCCCCC------HHHHHHHHhcCCEEEeech--h---hhhh---hhccCCCcEEEEEeeCCc
Q 043548 226 VEVKRVAEDTGFEVTVFEPTPKTS------LRQAYALINSSHAMVGVHG--A---ALTH---SLFLRPGSVFVQVVPLGL 291 (385)
Q Consensus 226 ~ev~~~l~~~gf~v~~~~~~~~~s------~~eq~~l~~~advlVGvHG--A---gLtn---~lFl~pgs~viEi~P~g~ 291 (385)
..+.+.++.+|++|...++..... ...--+++..||+++-.=- . +|-| +--|+||+.+|-+---+.
T Consensus 169 ~~vA~~l~~~G~~V~~yd~~~~~~~~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~v 248 (416)
T 3k5p_A 169 SQVGNLAESLGMTVRYYDTSDKLQYGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSD 248 (416)
T ss_dssp HHHHHHHHHTTCEEEEECTTCCCCBTTBEECSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTS
T ss_pred HHHHHHHHHCCCEEEEECCcchhcccCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChh
Confidence 467788899999999887542221 1234457889999874221 1 1211 223899999997643322
Q ss_pred cccccccHHHHHhhc---CCcEEEEEecccccchhhhcCCCCccccCCccc---cCCCcchhhhhhhhcCCceEEchHhH
Q 043548 292 EWVAEVCFGTSAKAM---GLDYMEYKINAEESSLIEKYNKNDTVIKDPVAF---RGKSWSDAAMNIYLKEQNVKLDLFRF 365 (385)
Q Consensus 292 ~~~~~~~y~~~A~~~---gl~Y~~y~~~~~essl~~~y~~d~~v~~dP~~~---~~~gw~~~~~~~yl~~Qdv~ldi~rF 365 (385)
..-..+++++ ++......+-.+|-... .-+-+||.+.-|..+ |-.|+ ..+..
T Consensus 249 -----vd~~aL~~aL~~g~i~gAalDVf~~EP~~~-~~~~~~pL~~~~nvilTPHig~~----------------T~ea~ 306 (416)
T 3k5p_A 249 -----VDLEALAKVLQEGHLAGAAIDVFPVEPASN-GERFSTPLQGLENVILTPHIGGS----------------TEEAQ 306 (416)
T ss_dssp -----BCHHHHHHHHHTTSEEEEEECCCSSCCSST-TSCCCCTTTTCTTEEECCSCTTC----------------CHHHH
T ss_pred -----hhHHHHHHHHHcCCccEEEeCCCCCCCCCc-ccccchhHhcCCCEEECCCCCCC----------------CHHHH
Confidence 2334444433 34445545544443211 111234554444322 43333 23456
Q ss_pred HHHHHHHHHHHHhhhhcC
Q 043548 366 REYLKKVYKKAKRFMDKG 383 (385)
Q Consensus 366 ~~~L~~a~~~~~~~~~~~ 383 (385)
...-..+.+.+.+|++.+
T Consensus 307 ~~~~~~~~~nl~~~l~~g 324 (416)
T 3k5p_A 307 ERIGTEVTRKLVEYSDVG 324 (416)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 677778888888888654
No 29
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}
Probab=49.13 E-value=1.3e+02 Score=28.74 Aligned_cols=130 Identities=11% Similarity=-0.019 Sum_probs=76.3
Q ss_pred HHHHHHHHHCCCEEEEecCCCCCCH---------HHHHHHHhcCCEEEeechh-----hhhh---hhccCCCcEEEEEee
Q 043548 226 VEVKRVAEDTGFEVTVFEPTPKTSL---------RQAYALINSSHAMVGVHGA-----ALTH---SLFLRPGSVFVQVVP 288 (385)
Q Consensus 226 ~ev~~~l~~~gf~v~~~~~~~~~s~---------~eq~~l~~~advlVGvHGA-----gLtn---~lFl~pgs~viEi~P 288 (385)
.++++.|+.+|++|...+... .+. .+--+++..||+++-.=-. +|-| +--|+||+.+|-+--
T Consensus 186 ~~vA~~l~~~G~~V~~~dr~~-~~~~~~~g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aR 264 (345)
T 4g2n_A 186 RAIATRARGFGLAIHYHNRTR-LSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISR 264 (345)
T ss_dssp HHHHHHHHTTTCEEEEECSSC-CCHHHHTTCEECSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSC
T ss_pred HHHHHHHHHCCCEEEEECCCC-cchhhhcCCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCC
Confidence 577888999999999887642 111 1334567899998753321 2221 223899999997643
Q ss_pred CCccccccccHHHHHhhc---CCcEEEEEecccccchhhhcCCCCccccCCcc---ccCCCcchhhhhhhhcCCceEEch
Q 043548 289 LGLEWVAEVCFGTSAKAM---GLDYMEYKINAEESSLIEKYNKNDTVIKDPVA---FRGKSWSDAAMNIYLKEQNVKLDL 362 (385)
Q Consensus 289 ~g~~~~~~~~y~~~A~~~---gl~Y~~y~~~~~essl~~~y~~d~~v~~dP~~---~~~~gw~~~~~~~yl~~Qdv~ldi 362 (385)
-++ ..-..+++.+ .+......+-.+|- +.+||.+.-|.. .|-.|+. .
T Consensus 265 G~~-----vde~aL~~aL~~g~i~gA~LDVf~~EP------~~~~pL~~~~nvilTPHia~~t----------------~ 317 (345)
T 4g2n_A 265 GDL-----INDDALIEALRSKHLFAAGLDVFANEP------AIDPRYRSLDNIFLTPHIGSAT----------------H 317 (345)
T ss_dssp GGG-----BCHHHHHHHHHHTSEEEEEESCCTTTT------SCCTTGGGCTTEEECCSCTTCB----------------H
T ss_pred Cch-----hCHHHHHHHHHhCCceEEEecCCCCCC------CCCchHHhCCCEEEcCccCcCC----------------H
Confidence 221 2233344332 34445555544442 457777776643 2544441 2
Q ss_pred HhHHHHHHHHHHHHHhhhhcC
Q 043548 363 FRFREYLKKVYKKAKRFMDKG 383 (385)
Q Consensus 363 ~rF~~~L~~a~~~~~~~~~~~ 383 (385)
+........+++.+.+|+..+
T Consensus 318 e~~~~~~~~~~~ni~~~l~g~ 338 (345)
T 4g2n_A 318 ETRDAMGWLLIQGIEALNQSD 338 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 445677778888888888654
No 30
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=48.43 E-value=27 Score=32.62 Aligned_cols=57 Identities=23% Similarity=0.248 Sum_probs=38.8
Q ss_pred CCCeEEEEEccCCCCcccccH----HHHHHHHHHCCCEEEEecCCCCCC------------HHHHHHHHhcCCEEEe
Q 043548 205 TRPRLMLMSRRGGLGRVILNQ----VEVKRVAEDTGFEVTVFEPTPKTS------------LRQAYALINSSHAMVG 265 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne----~ev~~~l~~~gf~v~~~~~~~~~s------------~~eq~~l~~~advlVG 265 (385)
..++|++|.=.. |+=-|- +++++.+++.|.+|.+++.. +++ +.+.++.+..||.+|=
T Consensus 57 ~~mKILiI~GS~---R~~S~T~~La~~~~~~l~~~G~eveiidL~-dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~ 129 (279)
T 2fzv_A 57 PPVRILLLYGSL---RARSFSRLAVEEAARLLQFFGAETRIFDPS-DLPLPDQVQSDDHPAVKELRALSEWSEGQVW 129 (279)
T ss_dssp SCCEEEEEESCC---SSSCHHHHHHHHHHHHHHHTTCEEEEBCCT-TCCCTTTSGGGCCHHHHHHHHHHHHCSEEEE
T ss_pred CCCEEEEEEeCC---CCCCHHHHHHHHHHHHHhhCCCEEEEEehh-cCCCCccCccCCCHHHHHHHHHHHHCCeEEE
Confidence 457888887322 322232 24455666779999988865 455 7788899999999873
No 31
>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}
Probab=48.03 E-value=1.5e+02 Score=28.48 Aligned_cols=131 Identities=15% Similarity=0.065 Sum_probs=73.9
Q ss_pred HHHHHHHHHCCCEEEEecCCCCCC--------HHHHHHHHhcCCEEEee--chh---hhhh---hhccCCCcEEEEEeeC
Q 043548 226 VEVKRVAEDTGFEVTVFEPTPKTS--------LRQAYALINSSHAMVGV--HGA---ALTH---SLFLRPGSVFVQVVPL 289 (385)
Q Consensus 226 ~ev~~~l~~~gf~v~~~~~~~~~s--------~~eq~~l~~~advlVGv--HGA---gLtn---~lFl~pgs~viEi~P~ 289 (385)
..+++.++.+|++|+..++..... ..+--+++..||+++-. -.. +|-| +--|+||+.+|-+---
T Consensus 189 ~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG 268 (365)
T 4hy3_A 189 KALRRVLSGFRARIRVFDPWLPRSMLEENGVEPASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRA 268 (365)
T ss_dssp HHHHHHHTTSCCEEEEECSSSCHHHHHHTTCEECCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCG
T ss_pred HHHHHhhhhCCCEEEEECCCCCHHHHhhcCeeeCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCC
Confidence 567788888999999887532110 01123578899998842 111 1111 2238999999976422
Q ss_pred CccccccccHHHHHhh---cCCcEEEEEecccccchhhhcCCCCccccCCccc---cCCCcchhhhhhhhcCCceEEchH
Q 043548 290 GLEWVAEVCFGTSAKA---MGLDYMEYKINAEESSLIEKYNKNDTVIKDPVAF---RGKSWSDAAMNIYLKEQNVKLDLF 363 (385)
Q Consensus 290 g~~~~~~~~y~~~A~~---~gl~Y~~y~~~~~essl~~~y~~d~~v~~dP~~~---~~~gw~~~~~~~yl~~Qdv~ldi~ 363 (385)
+. ..-..++.. -.+. ....+...|- .+.+||.+.-|..+ |--|+ -.+
T Consensus 269 ~~-----vde~aL~~aL~~g~i~-aaLDV~~~EP-----l~~~~pL~~~~nvilTPHia~~----------------t~e 321 (365)
T 4hy3_A 269 DV-----VDFDALMAAVSSGHIV-AASDVYPEEP-----LPLDHPVRSLKGFIRSAHRAGA----------------LDS 321 (365)
T ss_dssp GG-----SCHHHHHHHHHTTSSE-EEESCCSSSS-----CCTTCGGGTCTTEEECCSCSSC----------------CHH
T ss_pred ch-----hCHHHHHHHHHcCCce-EEeeCCCCCC-----CCCCChhhcCCCEEECCccccC----------------HHH
Confidence 21 222333332 2344 4444444432 35677777766532 54443 124
Q ss_pred hHHHHHHHHHHHHHhhhhcC
Q 043548 364 RFREYLKKVYKKAKRFMDKG 383 (385)
Q Consensus 364 rF~~~L~~a~~~~~~~~~~~ 383 (385)
.+..+...+++.+.+|+..+
T Consensus 322 ~~~~~~~~~~~ni~~~~~G~ 341 (365)
T 4hy3_A 322 AFKKMGDMVLEDMDLMDRGL 341 (365)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 56677778888888887543
No 32
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=46.63 E-value=43 Score=29.58 Aligned_cols=67 Identities=12% Similarity=0.126 Sum_probs=47.2
Q ss_pred CCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeechhhhhh
Q 043548 206 RPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHGAALTH 273 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHGAgLtn 273 (385)
.+|++||.=.......-.|.+.+.+++++.|+++.+++-. +.+.++..+.+.+||.|+=.-|...+-
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~-~~~~~~~~~~l~~ad~I~l~GG~~~~l 93 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIA-TESLGEITTKLRKNDFIYVTGGNTFFL 93 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTT-TSCHHHHHHHHHHSSEEEECCSCHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEec-CCChHHHHHHHHhCCEEEECCCCHHHH
Confidence 4899999733210112347788999999999999887543 356777778899999998666665543
No 33
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=46.34 E-value=18 Score=30.53 Aligned_cols=43 Identities=9% Similarity=0.187 Sum_probs=28.1
Q ss_pred cHHHHHHHHHHCCCEEEEecCCCCCCHHHH---HHHHhcCC--------EEEeechh
Q 043548 224 NQVEVKRVAEDTGFEVTVFEPTPKTSLRQA---YALINSSH--------AMVGVHGA 269 (385)
Q Consensus 224 Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq---~~l~~~ad--------vlVGvHGA 269 (385)
..+.+.+.++++||+|.+.+ +++..|- ++-+++-| ++|--||-
T Consensus 42 D~~~L~~~f~~LgF~V~~~~---dlt~~em~~~l~~~~~~dh~~~dc~vv~ilSHG~ 95 (146)
T 2dko_A 42 DAANLRETFRNLKYEVRNKN---DLTREEIVELMRDVSKEDHSKRSSFVCVLLSHGE 95 (146)
T ss_dssp HHHHHHHHHHHTTCEEEEEE---SCCHHHHHHHHHHHHHSCCTTEEEEEEEEESCEE
T ss_pred HHHHHHHHHHHCCCEEEEee---CCCHHHHHHHHHHHHHhhcCCCCeEEEEeccCCC
Confidence 34567788999999999876 4565544 44444443 45556765
No 34
>1xov_A PLY protein, plypsa; alpha/beta hydrolase, multi-domain, hydrolase; 1.80A {Listeria phage psa} SCOP: b.34.11.4 c.56.5.6
Probab=46.27 E-value=14 Score=35.49 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=28.2
Q ss_pred HHHHHHCCCEEE-E-ecCC--CCCCHHHHHHHHhc--CCEEEeechhh
Q 043548 229 KRVAEDTGFEVT-V-FEPT--PKTSLRQAYALINS--SHAMVGVHGAA 270 (385)
Q Consensus 229 ~~~l~~~gf~v~-~-~~~~--~~~s~~eq~~l~~~--advlVGvHGAg 270 (385)
.+.|++.|++|. + ..-. ...++.+-+++.++ ||++|+.|--+
T Consensus 47 ~~~L~~~G~~V~V~m~tR~~D~~~~L~~R~~~An~~~ADlfISIH~Na 94 (326)
T 1xov_A 47 SDELKREGHNVKTFIDRTSTTQSANLNKIVNWHNANPADVHISVHLNA 94 (326)
T ss_dssp HHHHHHTTCEEEEEEESSCCSHHHHHHHHHHHHHHSCCSEEEEEEEEC
T ss_pred HHHHHhCCCceEEEEecCCCCccCCHHHHHHHHHhcCCCEEEEEeccC
Confidence 355666799952 3 3211 12467788888765 99999999765
No 35
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1
Probab=46.20 E-value=1.6e+02 Score=27.54 Aligned_cols=130 Identities=16% Similarity=0.114 Sum_probs=70.3
Q ss_pred HHHHHHHHHCCCEEEEecC-CCCCCH--------H-HHHHHHhcCCEEEeech--hh---hh---hhhccCCCcEEEEEe
Q 043548 226 VEVKRVAEDTGFEVTVFEP-TPKTSL--------R-QAYALINSSHAMVGVHG--AA---LT---HSLFLRPGSVFVQVV 287 (385)
Q Consensus 226 ~ev~~~l~~~gf~v~~~~~-~~~~s~--------~-eq~~l~~~advlVGvHG--Ag---Lt---n~lFl~pgs~viEi~ 287 (385)
..+++.++..|++|++.+. ...... . +--+++..||+++-.-- .. +- .+-.|+||+.+|-+-
T Consensus 159 ~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~a 238 (320)
T 1gdh_A 159 QALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTA 238 (320)
T ss_dssp HHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECS
T ss_pred HHHHHHHHHCCCEEEEECCCCcChhhhhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECC
Confidence 4567788888999998876 422100 0 12256789999886433 11 11 123489999999775
Q ss_pred eCCccccccccHHHHHhh---cCCcEEEEEecccccchhhhcCCCCccccCCccc---cCCCcchhhhhhhhcCCceEEc
Q 043548 288 PLGLEWVAEVCFGTSAKA---MGLDYMEYKINAEESSLIEKYNKNDTVIKDPVAF---RGKSWSDAAMNIYLKEQNVKLD 361 (385)
Q Consensus 288 P~g~~~~~~~~y~~~A~~---~gl~Y~~y~~~~~essl~~~y~~d~~v~~dP~~~---~~~gw~~~~~~~yl~~Qdv~ld 361 (385)
--+. ..-..+++. -++......+...|- +.+||.+..|..+ |..++.
T Consensus 239 rg~~-----vd~~aL~~aL~~g~i~gA~lDv~~~eP------~~~~~L~~~~nviltPH~~~~t---------------- 291 (320)
T 1gdh_A 239 RGDL-----VDNELVVAALEAGRLAYAGFDVFAGEP------NINEGYYDLPNTFLFPHIGSAA---------------- 291 (320)
T ss_dssp CGGG-----BCHHHHHHHHHHTSEEEEEESCCTTTT------SCCTTGGGCTTEEECSSCTTCB----------------
T ss_pred CCcc-----cCHHHHHHHHHhCCCcEEEEeCCCCCC------CCCChhhhCCCEEECCcCCcCc----------------
Confidence 4221 122333332 234433333333332 5577777776532 544431
Q ss_pred hHhHHHHHHHHHHHHHhhhhcC
Q 043548 362 LFRFREYLKKVYKKAKRFMDKG 383 (385)
Q Consensus 362 i~rF~~~L~~a~~~~~~~~~~~ 383 (385)
.+........+ +.+.+|+..+
T Consensus 292 ~~~~~~~~~~~-~nl~~~~~g~ 312 (320)
T 1gdh_A 292 TQAREDMAHQA-NDLIDALFGG 312 (320)
T ss_dssp HHHHHHHHHHH-HHHHHHHHTT
T ss_pred HHHHHHHHHHH-HHHHHHHcCC
Confidence 23345556666 7777776543
No 36
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}
Probab=45.37 E-value=1.2e+02 Score=28.69 Aligned_cols=135 Identities=10% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCEEEEecCCCCCCHHHHH--------HHHhcCCEEEeechhhh-hhhhc-------cCCCcEEEEEeeC
Q 043548 226 VEVKRVAEDTGFEVTVFEPTPKTSLRQAY--------ALINSSHAMVGVHGAAL-THSLF-------LRPGSVFVQVVPL 289 (385)
Q Consensus 226 ~ev~~~l~~~gf~v~~~~~~~~~s~~eq~--------~l~~~advlVGvHGAgL-tn~lF-------l~pgs~viEi~P~ 289 (385)
..+++.++.+|++|+..++........+. +++..||+++-.=...= |.-++ |+||+.+|-+---
T Consensus 178 ~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg 257 (335)
T 2g76_A 178 REVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARG 257 (335)
T ss_dssp HHHHHHHHTTTCEEEEECSSSCHHHHHHTTCEECCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCT
T ss_pred HHHHHHHHHCCCEEEEECCCcchhhhhhcCceeCCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCc
Q ss_pred CccccccccHHHHHhhcCCcEEEEEecccccchhhhcCCCCccccCCccc---cCCCcchhhhhhhhcCCceEEchHhHH
Q 043548 290 GLEWVAEVCFGTSAKAMGLDYMEYKINAEESSLIEKYNKNDTVIKDPVAF---RGKSWSDAAMNIYLKEQNVKLDLFRFR 366 (385)
Q Consensus 290 g~~~~~~~~y~~~A~~~gl~Y~~y~~~~~essl~~~y~~d~~v~~dP~~~---~~~gw~~~~~~~yl~~Qdv~ldi~rF~ 366 (385)
+. .....-....+.-++......+-..|-. .++|.++.|..+ |-.|+ -.+...
T Consensus 258 ~v--vd~~aL~~aL~~g~i~gA~lDV~~~EP~------~~~~L~~~~nvilTPH~~~~----------------t~e~~~ 313 (335)
T 2g76_A 258 GI--VDEGALLRALQSGQCAGAALDVFTEEPP------RDRALVDHENVISCPHLGAS----------------TKEAQS 313 (335)
T ss_dssp TS--BCHHHHHHHHHHTSEEEEEESCCSSSSC------SCCHHHHSTTEEECSSCTTC----------------BHHHHH
T ss_pred cc--cCHHHHHHHHHhCCccEEEEeecCCCCC------CCchHHhCCCEEECCcCCCC----------------CHHHHH
Q ss_pred HHHHHHHHHHHhhhhcCC
Q 043548 367 EYLKKVYKKAKRFMDKGE 384 (385)
Q Consensus 367 ~~L~~a~~~~~~~~~~~~ 384 (385)
.....+.+.+.+|+..+.
T Consensus 314 ~~~~~~~~nl~~~~~g~~ 331 (335)
T 2g76_A 314 RCGEEIAVQFVDMVKGKS 331 (335)
T ss_dssp HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHcCCC
No 37
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=44.59 E-value=25 Score=30.12 Aligned_cols=52 Identities=13% Similarity=0.235 Sum_probs=32.9
Q ss_pred cHHHHHHHHHHCCCEEEEecCCCCCCHHH---HHHHHhcCC--------EEEeechhhhhhhhccCCC
Q 043548 224 NQVEVKRVAEDTGFEVTVFEPTPKTSLRQ---AYALINSSH--------AMVGVHGAALTHSLFLRPG 280 (385)
Q Consensus 224 Ne~ev~~~l~~~gf~v~~~~~~~~~s~~e---q~~l~~~ad--------vlVGvHGAgLtn~lFl~pg 280 (385)
..+.|.+.++++||+|.+.+ +++..| .++-+++-| ++|--||-- +.++...|
T Consensus 56 D~~~L~~~f~~LgF~V~~~~---dlt~~em~~~l~~~~~~dh~~~dc~vv~ilSHG~~--g~i~g~D~ 118 (164)
T 1qtn_A 56 DAGALTTTFEELHFEIKPHD---DCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDK--GIIYGTDG 118 (164)
T ss_dssp HHHHHHHHHHHTTCEEEEEE---SCCHHHHHHHHHHHHHSCCTTCSCEEEEEESCEET--TEEECTTS
T ss_pred HHHHHHHHHHHCCCEEEEec---CCCHHHHHHHHHHHHHhhccCCCEEEEEeCCCCCC--CEEEeeCC
Confidence 34567788999999998876 455544 444454444 566667752 45554444
No 38
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}
Probab=42.73 E-value=64 Score=29.94 Aligned_cols=56 Identities=18% Similarity=0.193 Sum_probs=39.6
Q ss_pred HHHHHHhcCCEEEeechhhhhh--------hhccCCCcEEEEEeeCCccccccccHHHHHhhcCCcEE
Q 043548 252 QAYALINSSHAMVGVHGAALTH--------SLFLRPGSVFVQVVPLGLEWVAEVCFGTSAKAMGLDYM 311 (385)
Q Consensus 252 eq~~l~~~advlVGvHGAgLtn--------~lFl~pgs~viEi~P~g~~~~~~~~y~~~A~~~gl~Y~ 311 (385)
+-.+.+..+|++|..-|+|+.- .-++++|++|+.+.- . + ..+.+...|+..|.++.
T Consensus 197 ~~~~~~~~aDivIn~t~~~~~~~~~~~~i~~~~l~~~~~v~D~~y-~--P-~~T~ll~~A~~~G~~~v 260 (297)
T 2egg_A 197 EAETRLAEYDIIINTTSVGMHPRVEVQPLSLERLRPGVIVSDIIY-N--P-LETKWLKEAKARGARVQ 260 (297)
T ss_dssp HHHHTGGGCSEEEECSCTTCSSCCSCCSSCCTTCCTTCEEEECCC-S--S-SSCHHHHHHHHTTCEEE
T ss_pred HHHhhhccCCEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEcCC-C--C-CCCHHHHHHHHCcCEEE
Confidence 3345678899999999998841 124578999999863 1 1 23457788899998765
No 39
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*
Probab=42.48 E-value=1.8e+02 Score=27.33 Aligned_cols=135 Identities=13% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCEEEEecCCCCCCHHHHH--------HHHhcCCEEEeechhhh-hhhhc-------cCCCcEEEEEeeC
Q 043548 226 VEVKRVAEDTGFEVTVFEPTPKTSLRQAY--------ALINSSHAMVGVHGAAL-THSLF-------LRPGSVFVQVVPL 289 (385)
Q Consensus 226 ~ev~~~l~~~gf~v~~~~~~~~~s~~eq~--------~l~~~advlVGvHGAgL-tn~lF-------l~pgs~viEi~P~ 289 (385)
..+.+.+++.|++|...+........+.. +++..||+++-.-...- |.-++ |+||+.+|-+---
T Consensus 163 ~~iA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~srg 242 (334)
T 2dbq_A 163 QAIAKRAKGFNMRILYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARG 242 (334)
T ss_dssp HHHHHHHHHTTCEEEEECSSCCHHHHHHHCCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCG
T ss_pred HHHHHHHHhCCCEEEEECCCcchhhHhhcCcccCCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCCC
Q ss_pred CccccccccHHHHHhhcCCcEEEEEecccccchhhhcCCCCccccCCccc---cCCCcchhhhhhhhcCCceEEchHhHH
Q 043548 290 GLEWVAEVCFGTSAKAMGLDYMEYKINAEESSLIEKYNKNDTVIKDPVAF---RGKSWSDAAMNIYLKEQNVKLDLFRFR 366 (385)
Q Consensus 290 g~~~~~~~~y~~~A~~~gl~Y~~y~~~~~essl~~~y~~d~~v~~dP~~~---~~~gw~~~~~~~yl~~Qdv~ldi~rF~ 366 (385)
+. .....-...-+.-++......+...|- +.+||.+..|..+ |-.+. ..+...
T Consensus 243 ~~--v~~~aL~~aL~~~~i~ga~lDv~~~EP------~~~~~L~~~~~vi~tPh~~~~----------------t~~~~~ 298 (334)
T 2dbq_A 243 KV--VDTNALVKALKEGWIAGAGLDVFEEEP------YYNEELFKLDNVVLTPHIGSA----------------SFGARE 298 (334)
T ss_dssp GG--BCHHHHHHHHHHTSSSEEEESCCSSSS------CCCHHHHHCTTEEECSSCTTC----------------SHHHHH
T ss_pred cc--cCHHHHHHHHHhCCeeEEEecCCCCCC------CCCchhhcCCCEEECCccCCC----------------cHHHHH
Q ss_pred HHHHHHHHHHHhhhhcCC
Q 043548 367 EYLKKVYKKAKRFMDKGE 384 (385)
Q Consensus 367 ~~L~~a~~~~~~~~~~~~ 384 (385)
.....+.+.+.+|+..++
T Consensus 299 ~~~~~~~~n~~~~~~g~~ 316 (334)
T 2dbq_A 299 GMAELVAKNLIAFKRGEI 316 (334)
T ss_dssp HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHcCCC
No 40
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=42.41 E-value=23 Score=32.35 Aligned_cols=55 Identities=11% Similarity=0.207 Sum_probs=33.9
Q ss_pred cHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCC--------EEEeechhhhhhhhccCCC
Q 043548 224 NQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSH--------AMVGVHGAALTHSLFLRPG 280 (385)
Q Consensus 224 Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~ad--------vlVGvHGAgLtn~lFl~pg 280 (385)
..+.|.+.++++||+|.+.+-.....+.+.++-+.+-| +++.-||- -+.++...+
T Consensus 42 D~~~l~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~~~~~~d~~v~~~lsHG~--~g~i~~~D~ 104 (250)
T 2j32_A 42 DAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSSFVCVLLSHGE--EGIIFGTNG 104 (250)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTSCCTTEEEEEEEEESCEE--TTEEEETTE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHhhccCCCEEEEEECCCCC--CCeEEecCC
Confidence 45677889999999999876322233444455554443 45666886 345554444
No 41
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=41.35 E-value=47 Score=28.35 Aligned_cols=68 Identities=12% Similarity=0.102 Sum_probs=46.4
Q ss_pred CCCeEEEEEccCCCCcccc--cHHHHHHHHHHCCCEEEEe--cCCCCCCHHHHHHHHh---cCCEEEeechhhhhh
Q 043548 205 TRPRLMLMSRRGGLGRVIL--NQVEVKRVAEDTGFEVTVF--EPTPKTSLRQAYALIN---SSHAMVGVHGAALTH 273 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~--Ne~ev~~~l~~~gf~v~~~--~~~~~~s~~eq~~l~~---~advlVGvHGAgLtn 273 (385)
++||+-+|+=.+.. -++. |-.-+.+.|++.|+++... -+++.-.+.+.++... .+|++|-.=|.|.|.
T Consensus 9 ~~~~v~Ii~tGdE~-g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~g~~~ 83 (172)
T 1mkz_A 9 IPTRIAILTVSNRR-GEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGLTE 83 (172)
T ss_dssp CCCEEEEEEECSSC-CGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCCSSST
T ss_pred CCCEEEEEEEeCCC-CcccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCCC
Confidence 56888888755542 2344 4557788999999987532 2333345677776554 399999999998775
No 42
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=41.34 E-value=19 Score=31.30 Aligned_cols=52 Identities=15% Similarity=0.323 Sum_probs=33.6
Q ss_pred cHHHHHHHHHHCCCEEEEecCCCCCCHHH---HHHHHhcCC--------EEEeechhhhhhhhccCCC
Q 043548 224 NQVEVKRVAEDTGFEVTVFEPTPKTSLRQ---AYALINSSH--------AMVGVHGAALTHSLFLRPG 280 (385)
Q Consensus 224 Ne~ev~~~l~~~gf~v~~~~~~~~~s~~e---q~~l~~~ad--------vlVGvHGAgLtn~lFl~pg 280 (385)
..+.|.+.++++||+|.+.+ +++..| .++-+++-| ++|--||-. +.++...|
T Consensus 70 D~~~L~~~F~~LgF~V~v~~---dlt~~em~~~l~~~s~~dh~~~dc~vvvilSHG~~--g~I~g~D~ 132 (173)
T 2ql9_A 70 DAEALFKCFRSLGFDVIVYN---DCSCAKMQDLLKKASEEDHTNAACFACILLSHGEE--NVIYGKDG 132 (173)
T ss_dssp HHHHHHHHHHHHTEEEEEEE---SCCHHHHHHHHHHHHTSCCTTEEEEEEEEESCEET--TEEEETTE
T ss_pred HHHHHHHHHHHCCCEEEEEe---CCCHHHHHHHHHHHHHhhccCCCeEEEeecCCCCC--CEEEEcCC
Confidence 35677788899999999876 455544 455555555 666777753 44554444
No 43
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=41.24 E-value=19 Score=33.43 Aligned_cols=44 Identities=16% Similarity=0.168 Sum_probs=28.1
Q ss_pred cHHHHHHHHHHCCCEEEEecCCCCCCHH---HHHHHHhc-----CCE---EEeechhh
Q 043548 224 NQVEVKRVAEDTGFEVTVFEPTPKTSLR---QAYALINS-----SHA---MVGVHGAA 270 (385)
Q Consensus 224 Ne~ev~~~l~~~gf~v~~~~~~~~~s~~---eq~~l~~~-----adv---lVGvHGAg 270 (385)
..+.|.+.++++||+|.+.+ +++.. +.++-+.+ +|. ++--||-.
T Consensus 47 D~~~L~~~f~~LgF~V~~~~---dlt~~em~~~l~~~~~~~h~~~D~~vv~ilSHG~~ 101 (277)
T 1nw9_B 47 DCEKLRRRFSSLHFMVEVKG---DLTAKKMVLALLELARQDHGALDCCVVVILSHGCQ 101 (277)
T ss_dssp HHHHHHHHHHHTTEEEEEEE---SCCHHHHHHHHHHHHHSCCTTCSEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEEc---CCCHHHHHHHHHHHHHhhcccCCeEEEEEeCCCCc
Confidence 45677889999999999876 45544 44444432 332 44459854
No 44
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=40.10 E-value=2.1e+02 Score=27.88 Aligned_cols=135 Identities=14% Similarity=0.099 Sum_probs=68.2
Q ss_pred HHHHHHHHHCCCEEEEecCCCCCC------HHHHHHHHhcCCEEEeech--hhhhh------hhccCCCcEEEEEeeCCc
Q 043548 226 VEVKRVAEDTGFEVTVFEPTPKTS------LRQAYALINSSHAMVGVHG--AALTH------SLFLRPGSVFVQVVPLGL 291 (385)
Q Consensus 226 ~ev~~~l~~~gf~v~~~~~~~~~s------~~eq~~l~~~advlVGvHG--AgLtn------~lFl~pgs~viEi~P~g~ 291 (385)
..+.+.++.+|++|+..++..... ..+.-+++..||+++-.-- ..-.+ +--|+||+.+|-+---+.
T Consensus 158 ~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~ 237 (404)
T 1sc6_A 158 TQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTV 237 (404)
T ss_dssp HHHHHHHHHTTCEEEEECSSCCCCCTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSS
T ss_pred HHHHHHHHHCCCEEEEEcCCchhccCCceecCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChH
Confidence 467788899999999887642111 0122357889999875321 11112 224899999997753222
Q ss_pred cccccccHHHHHhhc---CCcEEEEEecccccchhhhcCCCCccccCCccc---cCCCcchhhhhhhhcCCceEEchHhH
Q 043548 292 EWVAEVCFGTSAKAM---GLDYMEYKINAEESSLIEKYNKNDTVIKDPVAF---RGKSWSDAAMNIYLKEQNVKLDLFRF 365 (385)
Q Consensus 292 ~~~~~~~y~~~A~~~---gl~Y~~y~~~~~essl~~~y~~d~~v~~dP~~~---~~~gw~~~~~~~yl~~Qdv~ldi~rF 365 (385)
..-..+++.+ ++......+-..|-- ...-+.+||.+.-|..+ |-.|. + .+..
T Consensus 238 -----vd~~aL~~aL~~g~i~gA~lDVf~~EP~-~~~~~~~~pL~~~~nvilTPHi~~~--T--------------~ea~ 295 (404)
T 1sc6_A 238 -----VDIPALADALASKHLAGAAIDVFPTEPA-TNSDPFTSPLAEFDNVLLTPHIGGS--T--------------QEAQ 295 (404)
T ss_dssp -----BCHHHHHHHHHTTSEEEEEEEC----------CTTTGGGTTCTTEEEECCCSCC--S--------------HHHH
T ss_pred -----HhHHHHHHHHHcCCccEEEEeecCCCCC-CccccccchhhcCCCEEECCCCCCC--c--------------HHHH
Confidence 2223444333 233333344333321 11112245555555432 53333 1 2334
Q ss_pred HHHHHHHHHHHHhhhhc
Q 043548 366 REYLKKVYKKAKRFMDK 382 (385)
Q Consensus 366 ~~~L~~a~~~~~~~~~~ 382 (385)
...-..+.+.+.+|+..
T Consensus 296 ~~~~~~~~~nl~~~l~g 312 (404)
T 1sc6_A 296 ENIGLEVAGKLIKYSDN 312 (404)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 55566677777777754
No 45
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=39.94 E-value=24 Score=32.76 Aligned_cols=56 Identities=20% Similarity=0.303 Sum_probs=35.8
Q ss_pred ccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCC--------EEEeechhhhhhhhccCCC
Q 043548 223 LNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSH--------AMVGVHGAALTHSLFLRPG 280 (385)
Q Consensus 223 ~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~ad--------vlVGvHGAgLtn~lFl~pg 280 (385)
...+.|.+.++++||+|.+.+......+.+.++-+.+-| +++.-||- -|.++...+
T Consensus 56 ~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~dh~~~d~~v~~~lsHG~--~~~i~~~D~ 119 (272)
T 1m72_A 56 VDSDNLSKVLKTLGFKVTVFPNLKSEEINKFIQQTAEMDHSDADCLLVAVLTHGE--LGMLYAKDT 119 (272)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTSCCTTEEEEEEEEESCEE--TTEEECSSS
T ss_pred HHHHHHHHHHHHCCCEEEEecCcCHHHHHHHHHHHHHhhcCCCCEEEEEEcCCCC--CCEEEecCC
Confidence 345577788999999999876322233445555555544 45666884 566666665
No 46
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}
Probab=39.52 E-value=88 Score=29.83 Aligned_cols=93 Identities=16% Similarity=0.090 Sum_probs=58.7
Q ss_pred cccccHHHHHHHHHHCCCEEEEecCC----CCCCHHHHHH----------HHhcCCEEEeechhhhhhhhccCCCcEEEE
Q 043548 220 RVILNQVEVKRVAEDTGFEVTVFEPT----PKTSLRQAYA----------LINSSHAMVGVHGAALTHSLFLRPGSVFVQ 285 (385)
Q Consensus 220 R~i~Ne~ev~~~l~~~gf~v~~~~~~----~~~s~~eq~~----------l~~~advlVGvHGAgLtn~lFl~pgs~viE 285 (385)
||+-=-.+-++.|.+.|++|.+ |.+ ...+=+|-.+ .+ +||+||++-----...-.++||..++-
T Consensus 14 ~Rv~l~P~~v~~L~~~g~~v~v-e~~ag~~~~~~d~~y~~aga~i~~~~~~~-~ad~il~vk~p~~~~~~~l~~~~~~~~ 91 (369)
T 2eez_A 14 NRVALTPGGVESLVRRGHTVLV-ERGAGEGSGLSDAEYARAGAELVGREEAW-GAEMVVKVKEPLPEEYGFLREGLILFT 91 (369)
T ss_dssp CCCSSCHHHHHHHHHTTCEEEE-ETTTTGGGTCCHHHHHHHTCEEECHHHHT-TSSEEECSSCCCGGGGGGCCTTCEEEE
T ss_pred ceeCcCHHHHHHHHhCCCEEEE-eCCCCccCCCCHHHHHHCCCEEeccccee-cCCEEEEECCCCHHHHhhcCCCcEEEE
Confidence 5555456777888889999976 322 1233233222 56 899999887554445567789988876
Q ss_pred EeeCCccccccccHHHHHhhcCCcEEEEEeccc
Q 043548 286 VVPLGLEWVAEVCFGTSAKAMGLDYMEYKINAE 318 (385)
Q Consensus 286 i~P~g~~~~~~~~y~~~A~~~gl~Y~~y~~~~~ 318 (385)
..-.+ .....-......|+..++|+....
T Consensus 92 ~~~~~----~~~~~~~~l~~~gi~~ia~e~~~~ 120 (369)
T 2eez_A 92 YLHLA----ADRGLTEAMLRSGVTGIAYETVQL 120 (369)
T ss_dssp CCCGG----GCHHHHHHHHHHTCEEEEGGGCCC
T ss_pred Eeccc----CCHHHHHHHHHCCCeEEEeecccc
Confidence 55433 233344455678999988765443
No 47
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=39.16 E-value=52 Score=30.26 Aligned_cols=82 Identities=15% Similarity=0.132 Sum_probs=47.0
Q ss_pred CCCeEEEEEccCCCCcccc--cHHHHHHHHHHCCCEEEEe-cC-------------------CCCCCHHHHHHHHhcCCE
Q 043548 205 TRPRLMLMSRRGGLGRVIL--NQVEVKRVAEDTGFEVTVF-EP-------------------TPKTSLRQAYALINSSHA 262 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~--Ne~ev~~~l~~~gf~v~~~-~~-------------------~~~~s~~eq~~l~~~adv 262 (385)
.+|.+++.-=.+...|+.- +-.++++.|.+.|++++.+ .. ...+++.|-+++++.||+
T Consensus 177 ~~~~i~l~pga~~~~k~wp~~~~~~l~~~L~~~~~~vvl~~g~~~e~~~~~~i~~~~~~~~l~g~~sl~el~ali~~a~l 256 (326)
T 2gt1_A 177 AGEYAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGAPHEEERAKRLAEGFAYVEVLPKMSLEGVARVLAGAKF 256 (326)
T ss_dssp TTSEEEEECCCSSGGGSCCHHHHHHHHHHTTTTCCEEEECCSSHHHHHHHHHHHTTCTTEEECCCCCHHHHHHHHHTCSE
T ss_pred CCCEEEEEeCCCCccccCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHHHhhCCcccccCCCCHHHHHHHHHhCCE
Confidence 3455555422221124444 4456666665557777664 10 124679999999999999
Q ss_pred EEeechhhhhhhhccCCCcEEEEEee
Q 043548 263 MVGVHGAALTHSLFLRPGSVFVQVVP 288 (385)
Q Consensus 263 lVGvHGAgLtn~lFl~pgs~viEi~P 288 (385)
+||+=. |.+|+-=+ =|+-+|-|+.
T Consensus 257 ~I~~DS-G~~HlAaa-~g~P~v~lfg 280 (326)
T 2gt1_A 257 VVSVDT-GLSHLTAA-LDRPNITVYG 280 (326)
T ss_dssp EEEESS-HHHHHHHH-TTCCEEEEES
T ss_pred EEecCC-cHHHHHHH-cCCCEEEEEC
Confidence 999842 23333322 3555666664
No 48
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure, structural genomics, NPPSFA; HET: MSE NAD; 2.12A {Aquifex aeolicus VF5} PDB: 3kb6_A*
Probab=38.69 E-value=67 Score=30.52 Aligned_cols=141 Identities=11% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCEEEEecCCCCCCHHH-------HHHHHhcCCEEEeechhh-hhhhhc-------cCCCcEEEEEeeCC
Q 043548 226 VEVKRVAEDTGFEVTVFEPTPKTSLRQ-------AYALINSSHAMVGVHGAA-LTHSLF-------LRPGSVFVQVVPLG 290 (385)
Q Consensus 226 ~ev~~~l~~~gf~v~~~~~~~~~s~~e-------q~~l~~~advlVGvHGAg-Ltn~lF-------l~pgs~viEi~P~g 290 (385)
..+++.|+.+|++|+..+........+ --+++..||+++-.--.. -|.-++ |+||+.+|-+---+
T Consensus 154 ~~vA~~l~~~G~~V~~~d~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRg~ 233 (334)
T 2pi1_A 154 SRVAMYGLAFGMKVLCYDVVKREDLKEKGCVYTSLDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGK 233 (334)
T ss_dssp HHHHHHHHHTTCEEEEECSSCCHHHHHTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGG
T ss_pred HHHHHHHHHCcCEEEEECCCcchhhHhcCceecCHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhhCCCCcEEEECCCCc
Q ss_pred ccccccccHHHHHhhcCCcEEEEEecccccc----------hhhhcCCCCccccCCccc---cCCCcchhhhhhhhcCCc
Q 043548 291 LEWVAEVCFGTSAKAMGLDYMEYKINAEESS----------LIEKYNKNDTVIKDPVAF---RGKSWSDAAMNIYLKEQN 357 (385)
Q Consensus 291 ~~~~~~~~y~~~A~~~gl~Y~~y~~~~~ess----------l~~~y~~d~~v~~dP~~~---~~~gw~~~~~~~yl~~Qd 357 (385)
. .....-...-+.-++......+-.+|.- +.+..+.+||.+.-|..+ |-.|+
T Consensus 234 ~--vd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~~~~~~~~~~~~~~~pL~~~~nvilTPHia~~------------- 298 (334)
T 2pi1_A 234 V--VDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVIITPHIAYY------------- 298 (334)
T ss_dssp G--BCHHHHHHHHHTTCEEEEEESCCTTHHHHHTTGGGGTCCCHHHHHHHHHHTSTTEEECCSCTTC-------------
T ss_pred c--cCHHHHHHHHHhCCceEEEeecCCCCCCccccccccccccccCccCChhhcCCCEEECCccccC-------------
Q ss_pred eEEchHhHHHHHHHHHHHHHhhhhcCC
Q 043548 358 VKLDLFRFREYLKKVYKKAKRFMDKGE 384 (385)
Q Consensus 358 v~ldi~rF~~~L~~a~~~~~~~~~~~~ 384 (385)
-.+.+......+++.+.+|+..+.
T Consensus 299 ---t~e~~~~~~~~~~~ni~~~~~g~~ 322 (334)
T 2pi1_A 299 ---TDKSLERIREETVKVVKAFVKGDL 322 (334)
T ss_dssp ---BHHHHHHHHHHHHHHHHHHHHTCG
T ss_pred ---hHHHHHHHHHHHHHHHHHHHcCCC
No 49
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=38.20 E-value=1.4e+02 Score=27.97 Aligned_cols=81 Identities=14% Similarity=0.049 Sum_probs=49.2
Q ss_pred CCeEEEEEccCCCCcccc--cHHHHHHHHHHCCCEEEEecC---------------------CCCCCHHHHHHHHhcCCE
Q 043548 206 RPRLMLMSRRGGLGRVIL--NQVEVKRVAEDTGFEVTVFEP---------------------TPKTSLRQAYALINSSHA 262 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~--Ne~ev~~~l~~~gf~v~~~~~---------------------~~~~s~~eq~~l~~~adv 262 (385)
+|.+++.-......|+.- +-.++++.|.+.|++++++.. ...+++.|-+++++.||+
T Consensus 185 ~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~g~~vvl~g~~~e~~~~~~i~~~~~~~~~~l~g~~sl~e~~ali~~a~~ 264 (349)
T 3tov_A 185 DILIGFNIGSAVPEKRWPAERFAHVADYFGRLGYKTVFFGGPMDLEMVQPVVEQMETKPIVATGKFQLGPLAAAMNRCNL 264 (349)
T ss_dssp CCEEEEECCCSSGGGCCCHHHHHHHHHHHHHHTCEEEECCCTTTHHHHHHHHHTCSSCCEECTTCCCHHHHHHHHHTCSE
T ss_pred CCEEEEeCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEeCcchHHHHHHHHHhcccccEEeeCCCCHHHHHHHHHhCCE
Confidence 455555433222235543 566888777766887765421 124789999999999999
Q ss_pred EEeechhhhhhhhccCCCcEEEEEee
Q 043548 263 MVGVHGAALTHSLFLRPGSVFVQVVP 288 (385)
Q Consensus 263 lVGvHGAgLtn~lFl~pgs~viEi~P 288 (385)
+||+= +|..|+--+ =|.-+|-|+.
T Consensus 265 ~i~~D-sG~~HlAaa-~g~P~v~lfg 288 (349)
T 3tov_A 265 LITND-SGPMHVGIS-QGVPIVALYG 288 (349)
T ss_dssp EEEES-SHHHHHHHT-TTCCEEEECS
T ss_pred EEECC-CCHHHHHHh-cCCCEEEEEC
Confidence 99973 333443222 3555666653
No 50
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}
Probab=38.04 E-value=1.8e+02 Score=27.60 Aligned_cols=131 Identities=14% Similarity=0.057 Sum_probs=68.5
Q ss_pred HHHHHHHHHCCCEEEEecCCCCC--C---HHHHHHHHhcCCEEEeech--hhhhhhh------ccCCCcEEEEEeeCCcc
Q 043548 226 VEVKRVAEDTGFEVTVFEPTPKT--S---LRQAYALINSSHAMVGVHG--AALTHSL------FLRPGSVFVQVVPLGLE 292 (385)
Q Consensus 226 ~ev~~~l~~~gf~v~~~~~~~~~--s---~~eq~~l~~~advlVGvHG--AgLtn~l------Fl~pgs~viEi~P~g~~ 292 (385)
..+++.++.+|++|.+.+..... . ..+--+++..||+++-.=- ....+++ -|+||+.+|-+---+.
T Consensus 184 ~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~v- 262 (340)
T 4dgs_A 184 RALASRAEAFGMSVRYWNRSTLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNV- 262 (340)
T ss_dssp HHHHHHHHTTTCEEEEECSSCCTTSCCEECSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEECSCC---
T ss_pred HHHHHHHHHCCCEEEEEcCCcccccCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcc-
Confidence 46778888899999988754211 0 1233457889999875422 2122222 3899999997754332
Q ss_pred ccccccHHHHHh---hcCCcEEEEEecccccchhhhcCCCCccccCCcc---ccCCCcchhhhhhhhcCCceEEchHhHH
Q 043548 293 WVAEVCFGTSAK---AMGLDYMEYKINAEESSLIEKYNKNDTVIKDPVA---FRGKSWSDAAMNIYLKEQNVKLDLFRFR 366 (385)
Q Consensus 293 ~~~~~~y~~~A~---~~gl~Y~~y~~~~~essl~~~y~~d~~v~~dP~~---~~~~gw~~~~~~~yl~~Qdv~ldi~rF~ 366 (385)
..-..+++ .-.+......+-.+|-. .++|.+.-|.. .|-.|+ -.+...
T Consensus 263 ----vde~aL~~aL~~g~i~gA~LDVf~~EP~------~~~~L~~~~nvilTPHia~~----------------t~e~~~ 316 (340)
T 4dgs_A 263 ----VDEDALIEALKSGTIAGAGLDVFVNEPA------IRSEFHTTPNTVLMPHQGSA----------------TVETRM 316 (340)
T ss_dssp ----------------CCSSEEEESCCSSSSS------CCSHHHHSSSEEECSSCSSC----------------CHHHHH
T ss_pred ----cCHHHHHHHHHcCCceEEEeCCcCCCCC------CccchhhCCCEEEcCcCCcC----------------CHHHHH
Confidence 11122332 22355555555544431 12344444432 154343 134456
Q ss_pred HHHHHHHHHHHhhhhcC
Q 043548 367 EYLKKVYKKAKRFMDKG 383 (385)
Q Consensus 367 ~~L~~a~~~~~~~~~~~ 383 (385)
.....+.+.+.+|+..+
T Consensus 317 ~~~~~~~~nl~~~~~g~ 333 (340)
T 4dgs_A 317 AMGKLVLANLAAHFAGE 333 (340)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 67778888888887644
No 51
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=37.18 E-value=1.6e+02 Score=26.89 Aligned_cols=68 Identities=24% Similarity=0.265 Sum_probs=43.8
Q ss_pred cccc--cHHHHHHHHHHCCCEEEEec-------------------------CCCCCCHHHHHHHHhcCCEEEeechhhhh
Q 043548 220 RVIL--NQVEVKRVAEDTGFEVTVFE-------------------------PTPKTSLRQAYALINSSHAMVGVHGAALT 272 (385)
Q Consensus 220 R~i~--Ne~ev~~~l~~~gf~v~~~~-------------------------~~~~~s~~eq~~l~~~advlVGvHGAgLt 272 (385)
|+.- +-.++++.|.+.|+.++++. ....+++.|-+++++.||++||.= +|..
T Consensus 195 k~wp~~~~~~l~~~L~~~~~~vvl~g~~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sl~e~~ali~~a~l~I~~D-sg~~ 273 (348)
T 1psw_A 195 KRWPHYHYAELAKQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTND-SGLM 273 (348)
T ss_dssp GSCCHHHHHHHHHHHHHTTCEEEECCCGGGHHHHHHHHTTSCHHHHTTEEECTTTSCHHHHHHHHHTSSEEEEES-SHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCeEEEEeChhhHHHHHHHHHhhhhccccceEeccCcCCHHHHHHHHHhCCEEEecC-CHHH
Confidence 5554 55677777766677666431 112478999999999999999984 3444
Q ss_pred hhhccCCCcEEEEEeeC
Q 043548 273 HSLFLRPGSVFVQVVPL 289 (385)
Q Consensus 273 n~lFl~pgs~viEi~P~ 289 (385)
|+--+ =|.-+|-|+..
T Consensus 274 HlAaa-~g~P~v~lfg~ 289 (348)
T 1psw_A 274 HVAAA-LNRPLVALYGP 289 (348)
T ss_dssp HHHHH-TTCCEEEEESS
T ss_pred HHHHH-cCCCEEEEECC
Confidence 44333 35556666644
No 52
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=36.96 E-value=32 Score=31.66 Aligned_cols=55 Identities=18% Similarity=0.309 Sum_probs=34.5
Q ss_pred ccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCC--------EEEeechhhhhhhhccCC
Q 043548 223 LNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSH--------AMVGVHGAALTHSLFLRP 279 (385)
Q Consensus 223 ~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~ad--------vlVGvHGAgLtn~lFl~p 279 (385)
...+.|.+.++++||+|.+.+......+.+.++-+++-| +++.-||-. +.++...
T Consensus 44 ~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~~h~~~d~~v~~~lsHG~~--g~i~~~D 106 (259)
T 3sir_A 44 VDCENLTRVLKQLDFEVTVYKDCRYKDILRTIEYSASQNHSDSDCILVAILSHGEM--GYIYAKD 106 (259)
T ss_dssp CHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHHHHTSCCTTEEEEEEEEEECTTC--CCCCCTT
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHhhccCCCEEEEEEecCCCC--CeEEeCC
Confidence 346678899999999999876322333445555555443 456668864 5554433
No 53
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=36.01 E-value=37 Score=29.68 Aligned_cols=53 Identities=19% Similarity=0.325 Sum_probs=34.0
Q ss_pred cHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHh---cCC--------EEEeechhhhhhhhccCCCc
Q 043548 224 NQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALIN---SSH--------AMVGVHGAALTHSLFLRPGS 281 (385)
Q Consensus 224 Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~---~ad--------vlVGvHGAgLtn~lFl~pgs 281 (385)
..+.|.+.++++||+|.+.+ +++..|-.+.+. +-| |+|--||- -+.++...|.
T Consensus 70 D~~~L~~~F~~LGF~V~~~~---dlt~~em~~~l~~~~~~dh~~~dc~vvvilSHG~--~g~I~g~D~~ 133 (179)
T 3p45_A 70 DRDNLTRRFSDLGFEVKCFN---DLKAEELLLKIHEVSTVSHADADCFVCVFLSHGE--GNHIYAYDAK 133 (179)
T ss_dssp HHHHHHHHHHHTTCEEEEEE---SCCHHHHHHHHHHHHTSCCTTBSCEEEEEESCEE--TTEEECSSSE
T ss_pred HHHHHHHHHHHCCCEEEEEe---CCCHHHHHHHHHHHhhhhcCCCCEEEEEEeccCC--CCEEEEECCE
Confidence 35577888999999999876 566555544443 333 45666775 3555555553
No 54
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=34.81 E-value=40 Score=29.28 Aligned_cols=47 Identities=9% Similarity=0.128 Sum_probs=28.3
Q ss_pred eEEEEEccCC---CCcc--cccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHH
Q 043548 208 RLMLMSRRGG---LGRV--ILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALI 257 (385)
Q Consensus 208 rv~~isR~~~---~~R~--i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~ 257 (385)
..+||.-..- ..|. ....+.|.+.++++||+|.+.+ +++..|-.+.+
T Consensus 45 ~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~~~~---dlt~~em~~~l 96 (178)
T 2h54_A 45 LALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDVKK---NLTASDMTTEL 96 (178)
T ss_dssp EEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEEEEE---SCCHHHHHHHH
T ss_pred EEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEEEec---CCCHHHHHHHH
Confidence 4566665431 1232 3345677889999999999875 46655444433
No 55
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*
Probab=34.76 E-value=2.5e+02 Score=26.37 Aligned_cols=137 Identities=13% Similarity=0.122 Sum_probs=73.9
Q ss_pred HHHHHHHHHCCCEEEEecCCCCCCHH-------HHHHHHhcCCEEEeechh--h---hhh---hhccCCCcEEEEEeeCC
Q 043548 226 VEVKRVAEDTGFEVTVFEPTPKTSLR-------QAYALINSSHAMVGVHGA--A---LTH---SLFLRPGSVFVQVVPLG 290 (385)
Q Consensus 226 ~ev~~~l~~~gf~v~~~~~~~~~s~~-------eq~~l~~~advlVGvHGA--g---Ltn---~lFl~pgs~viEi~P~g 290 (385)
..+++.++..|++|.+.+......+. +--+++..||+++-.-.. . +-| +--|++|+.+|-+---+
T Consensus 159 ~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~ 238 (333)
T 1j4a_A 159 QVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGP 238 (333)
T ss_dssp HHHHHHHHHTTCEEEEECSSCCHHHHHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGG
T ss_pred HHHHHHHHHCCCEEEEECCCcchhHHhhCeecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCc
Confidence 45778888999999988754221011 122567799998875431 1 111 12379999999774322
Q ss_pred ccccccccHHHHHh---hcCCcEEEEEecccccc-hhhhc---CCCC----ccccCCcc---ccCCCcchhhhhhhhcCC
Q 043548 291 LEWVAEVCFGTSAK---AMGLDYMEYKINAEESS-LIEKY---NKND----TVIKDPVA---FRGKSWSDAAMNIYLKEQ 356 (385)
Q Consensus 291 ~~~~~~~~y~~~A~---~~gl~Y~~y~~~~~ess-l~~~y---~~d~----~v~~dP~~---~~~~gw~~~~~~~yl~~Q 356 (385)
. ..-..+++ .-++......+-.+|-. +.... +.+| |.+.-|.. .|--|+
T Consensus 239 ~-----vd~~aL~~aL~~g~i~gA~LDV~~~EP~~l~~~~~~~~~~~p~~~~L~~~~nvilTPHia~~------------ 301 (333)
T 1j4a_A 239 L-----VDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFY------------ 301 (333)
T ss_dssp G-----BCHHHHHHHHHHTSEEEEEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTTC------------
T ss_pred c-----cCHHHHHHHHHhCCceEEEEecCCCCCCccccccccccCCccchhhHHhCCCEEECCccccC------------
Confidence 1 22344443 34566666666555542 11110 1122 12222321 143332
Q ss_pred ceEEchHhHHHHHHHHHHHHHhhhhcC
Q 043548 357 NVKLDLFRFREYLKKVYKKAKRFMDKG 383 (385)
Q Consensus 357 dv~ldi~rF~~~L~~a~~~~~~~~~~~ 383 (385)
-.+......+.+.+.+.+|+..+
T Consensus 302 ----t~~~~~~~~~~~~~nl~~~~~g~ 324 (333)
T 1j4a_A 302 ----TTHAVRNMVVKAFDNNLELVEGK 324 (333)
T ss_dssp ----BHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ----HHHHHHHHHHHHHHHHHHHHcCC
Confidence 13456677788888888887653
No 56
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=34.68 E-value=33 Score=31.76 Aligned_cols=53 Identities=11% Similarity=0.226 Sum_probs=34.0
Q ss_pred cHHHHHHHHHHCCCEEEEecCCCCCCHH---HHHHHHhcC-----C---EEEeechhhhhhhhccCCCc
Q 043548 224 NQVEVKRVAEDTGFEVTVFEPTPKTSLR---QAYALINSS-----H---AMVGVHGAALTHSLFLRPGS 281 (385)
Q Consensus 224 Ne~ev~~~l~~~gf~v~~~~~~~~~s~~---eq~~l~~~a-----d---vlVGvHGAgLtn~lFl~pgs 281 (385)
..+.|.+.++++||+|.+.+ +++.. +.++-+++. | +++.-||-- |.++.-.|.
T Consensus 50 D~~~L~~~f~~LGF~V~~~~---dlt~~em~~~l~~~~~~~h~~~d~~v~~ilSHG~~--g~i~g~D~~ 113 (271)
T 3h11_B 50 DAGALTTTFEELHFEIKPHD---DCTVEQIYEILKIYQLMDHSNMDCFICCILSHGDK--GIIYGTDGQ 113 (271)
T ss_dssp HHHHHHHHHHHTTCEEEEEE---SCCHHHHHHHHHHHHHSCCTTCSCEEEEEESCEET--TEEECTTSC
T ss_pred HHHHHHHHHHHCCCEEEEEe---CCCHHHHHHHHHHHHHhcCCCCCEEEEEEEcCCcC--CEEEecCCC
Confidence 45677889999999999876 45544 444444333 3 345558863 666666653
No 57
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel, glycosyltransferase, transferase; HET: NDG; 1.85A {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A* 2zuw_A*
Probab=33.64 E-value=9.7 Score=40.21 Aligned_cols=118 Identities=14% Similarity=0.167 Sum_probs=73.1
Q ss_pred CCCeEEEEEccCCCCccc--------------ccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeechhh
Q 043548 205 TRPRLMLMSRRGGLGRVI--------------LNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHGAA 270 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i--------------~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHGAg 270 (385)
.+.+|.++.=-++ -|.. ....=++++|...+++|..+.. ..+.+. ......|||| =+|
T Consensus 437 ~~~kVAVLnsWGk-lRSW~~~~vaHak~~kq~ysy~GilEALsg~~~dV~FIsf---dDI~e~-e~L~d~DVII---n~G 508 (759)
T 2zuv_A 437 GELNVAILNSWGK-MRSWMAFTVAHALPNKQTYSYYGILESLSGMRVNVRFISF---DDVLAH-GIDSDIDVII---NGG 508 (759)
T ss_dssp CCSEEEEEESSGG-GGTTTTTCSSTTCCCTTTHHHHHHHHHHHTSSSEEEEEEH---HHHHHH-CCCTTCCEEE---EEE
T ss_pred cCceEEEEecCCC-CcccccccccccccccccccHHHHHHHHhcCCCceEEecH---HHhccc-cccccCCEEE---ecC
Confidence 4468888876553 1222 1333489999999999987642 222222 4578999999 666
Q ss_pred hhhhhccCC------------------CcEEEEEeeC-CccccccccHHHHHhhcCCcEEEEEecccccchhhhcC----
Q 043548 271 LTHSLFLRP------------------GSVFVQVVPL-GLEWVAEVCFGTSAKAMGLDYMEYKINAEESSLIEKYN---- 327 (385)
Q Consensus 271 Ltn~lFl~p------------------gs~viEi~P~-g~~~~~~~~y~~~A~~~gl~Y~~y~~~~~essl~~~y~---- 327 (385)
.+|.+|+.+ |..+|=+--+ .+.-.....|..+|..+|++...+.- .. ..+|+
T Consensus 509 ~A~TalSgg~~W~~p~~~~aLR~fV~~GGgLIgVGepSsfqg~g~gryFqLADVLGVd~e~g~d-lp----~gkY~~~~~ 583 (759)
T 2zuv_A 509 PVDTAFTGGDVWTNPKLVETVRAWVRGGGAFVGVGEPSSAPRFQTGRFFQLADVIGVDEERYQT-LS----VDKYFPPVV 583 (759)
T ss_dssp CTTSTTTCGGGGGCHHHHHHHHHHHHTTCEEEEEESTTEEEEEETTEEETTHHHHSEEECCSSC-TT----BCCBCCCCC
T ss_pred cchhcccCccccCCHHHHHHHHHHHHcCCcEEEeCCccccccccCcccccHHhhcCcccccCCc-CC----CCccccccC
Confidence 677777766 6777766533 22210233455599999998876432 11 34555
Q ss_pred CCCccccC
Q 043548 328 KNDTVIKD 335 (385)
Q Consensus 328 ~d~~v~~d 335 (385)
.+|+++.|
T Consensus 584 ~~HfIl~d 591 (759)
T 2zuv_A 584 PDHFITAD 591 (759)
T ss_dssp CSCTTTTT
T ss_pred CCCceecc
Confidence 36998886
No 58
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=33.23 E-value=40 Score=31.97 Aligned_cols=56 Identities=18% Similarity=0.263 Sum_probs=35.1
Q ss_pred ccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCC--------EEEeechhhhhhhhccCCC
Q 043548 223 LNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSH--------AMVGVHGAALTHSLFLRPG 280 (385)
Q Consensus 223 ~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~ad--------vlVGvHGAgLtn~lFl~pg 280 (385)
...+.|.+.++++||+|.+.+-.....+.+.++-+.+-| +++.-||- -|.++...+
T Consensus 84 ~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~~dh~~~D~~vv~ilSHG~--~g~i~g~D~ 147 (310)
T 2nn3_C 84 VDSDNLSKVLKTLGFKVTVFPNLKSEEINKFIQQTAEMDHSDADCLLVAVLTAGE--LGMLYAKDT 147 (310)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHSSCGGGBSCEEEEEEEEEE--TTEEECSSC
T ss_pred HHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHHhccCCCCEEEEEEeCCCC--CCEEEecCC
Confidence 345577888999999999876322233444455554443 35555985 566666665
No 59
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=33.08 E-value=26 Score=33.15 Aligned_cols=56 Identities=13% Similarity=0.292 Sum_probs=33.8
Q ss_pred ccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCC--------EEEeechhhhhhhhccCCC
Q 043548 223 LNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSH--------AMVGVHGAALTHSLFLRPG 280 (385)
Q Consensus 223 ~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~ad--------vlVGvHGAgLtn~lFl~pg 280 (385)
...+.|.+.++++||+|.+..-.....+.+.++-+.+-+ +++.-||-- |.++...+
T Consensus 94 ~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~~h~~~d~~vv~ilsHG~~--~~i~g~D~ 157 (305)
T 1f1j_A 94 KDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEE--NVIYGKDG 157 (305)
T ss_dssp HHHHHHHHHHHHHTEEEEEEESCCHHHHHHHHHHHHHSCGGGEEEEEEEEESCEET--TEEECSSS
T ss_pred HHHHHHHHHHHHCCCEEEEecCcCHHHHHHHHHHHHHhhcCCCCEEEEEEecCCCC--CeEEecCC
Confidence 345677889999999999876322223344444444333 566668853 55555554
No 60
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Probab=32.88 E-value=1.8e+02 Score=27.15 Aligned_cols=138 Identities=11% Similarity=0.030 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCEEEEecCCCCCCHHHHH--------HHHhcCCEEEeechhhh-hhhhc-------cCCCcEEEEEeeC
Q 043548 226 VEVKRVAEDTGFEVTVFEPTPKTSLRQAY--------ALINSSHAMVGVHGAAL-THSLF-------LRPGSVFVQVVPL 289 (385)
Q Consensus 226 ~ev~~~l~~~gf~v~~~~~~~~~s~~eq~--------~l~~~advlVGvHGAgL-tn~lF-------l~pgs~viEi~P~ 289 (385)
..+++.++..|++|++.+........++. +++..||+++-.-...= |.-++ |+||+.+|-+---
T Consensus 155 ~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg 234 (313)
T 2ekl_A 155 TKVGIIANAMGMKVLAYDILDIREKAEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRA 234 (313)
T ss_dssp HHHHHHHHHTTCEEEEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCG
T ss_pred HHHHHHHHHCCCEEEEECCCcchhHHHhcCceecCHHHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCC
Q ss_pred CccccccccHHHHHhhcCCcEEEEEecccccchhh---hcCCCCccccCCccccCCCcchhhhhhhhcCCceEEchHhHH
Q 043548 290 GLEWVAEVCFGTSAKAMGLDYMEYKINAEESSLIE---KYNKNDTVIKDPVAFRGKSWSDAAMNIYLKEQNVKLDLFRFR 366 (385)
Q Consensus 290 g~~~~~~~~y~~~A~~~gl~Y~~y~~~~~essl~~---~y~~d~~v~~dP~~~~~~gw~~~~~~~yl~~Qdv~ldi~rF~ 366 (385)
+. .....-....+.-++......+-..|---.. .+=....++-.| |..++ -.+...
T Consensus 235 ~~--vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~~~L~~~~nviltP---H~~~~----------------t~~~~~ 293 (313)
T 2ekl_A 235 VA--VNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTT---HIGAQ----------------TKEAQK 293 (313)
T ss_dssp GG--BCHHHHHHHHHTTCEEEEEESCCSSSSCCSHHHHHHHHSTTEEECC---SCTTC----------------SHHHHH
T ss_pred cc--cCHHHHHHHHHcCCCcEEEEecCCCCCCCCcccchHhhCCCEEECC---ccCcC----------------cHHHHH
Q ss_pred HHHHHHHHHHHhhhhcCC
Q 043548 367 EYLKKVYKKAKRFMDKGE 384 (385)
Q Consensus 367 ~~L~~a~~~~~~~~~~~~ 384 (385)
.....+.+.+.+|+..++
T Consensus 294 ~~~~~~~~n~~~~~~g~~ 311 (313)
T 2ekl_A 294 RVAEMTTQNLLNAMKELG 311 (313)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCC
No 61
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=32.60 E-value=34 Score=20.01 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=15.4
Q ss_pred CcccccHHHHHHHHHHC
Q 043548 219 GRVILNQVEVKRVAEDT 235 (385)
Q Consensus 219 ~R~i~Ne~ev~~~l~~~ 235 (385)
+|.+.||.|+.+.++++
T Consensus 9 grtfrnekelrdfiekf 25 (28)
T 1fme_A 9 GRTFRNEKELRDFIEKF 25 (28)
T ss_dssp SCEECCHHHHHHHHHHC
T ss_pred ccccccHHHHHHHHHHh
Confidence 59999999999999886
No 62
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=32.55 E-value=1.3e+02 Score=25.29 Aligned_cols=56 Identities=16% Similarity=0.105 Sum_probs=39.7
Q ss_pred CCCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHh--cCCEE
Q 043548 204 STRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALIN--SSHAM 263 (385)
Q Consensus 204 ~~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~--~advl 263 (385)
+++|++++..=.+. -.=+...-+..+++..||+|+.+.. ..+.++.++.+. ++|++
T Consensus 16 ~~~~~vlla~~~gd--~HdiG~~~va~~l~~~G~eVi~lG~--~~p~e~lv~aa~~~~~diV 73 (161)
T 2yxb_A 16 RRRYKVLVAKMGLD--GHDRGAKVVARALRDAGFEVVYTGL--RQTPEQVAMAAVQEDVDVI 73 (161)
T ss_dssp CCSCEEEEEEESSS--SCCHHHHHHHHHHHHTTCEEECCCS--BCCHHHHHHHHHHTTCSEE
T ss_pred CCCCEEEEEeCCCC--ccHHHHHHHHHHHHHCCCEEEECCC--CCCHHHHHHHHHhcCCCEE
Confidence 36788777655443 4555566677889999999997653 589998888886 44543
No 63
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=32.20 E-value=38 Score=31.44 Aligned_cols=54 Identities=17% Similarity=0.312 Sum_probs=34.8
Q ss_pred ccHHHHHHHHHHCCCEEEEecCCCCCCHHHH---HHHHhcC-----C---EEEeechhhhhhhhccCCCc
Q 043548 223 LNQVEVKRVAEDTGFEVTVFEPTPKTSLRQA---YALINSS-----H---AMVGVHGAALTHSLFLRPGS 281 (385)
Q Consensus 223 ~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq---~~l~~~a-----d---vlVGvHGAgLtn~lFl~pgs 281 (385)
...+.|.+.++++||+|.+.+ +++..|- ++-++.- | +++.-||-. +.++...|.
T Consensus 46 ~D~~~L~~~f~~LGF~V~~~~---dlt~~em~~~l~~~~~~~h~~~d~~vv~ilSHG~~--g~i~g~D~~ 110 (278)
T 3od5_A 46 ADRDNLTRRFSDLGFEVKCFN---DLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEG--NHIYAYDAK 110 (278)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE---SCCHHHHHHHHHHHHHSCCTTBSCEEEEEESCEET--TEEECSSSE
T ss_pred HHHHHHHHHHHHCCCEEEEec---CCCHHHHHHHHHHHHhhcccCCCEEEEEEECCCCC--CEEEEeCCe
Confidence 345677889999999999876 4554444 4444333 2 455568863 667666654
No 64
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=32.13 E-value=31 Score=25.83 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=18.3
Q ss_pred cccccHHHHHHHHHHCCCEEE
Q 043548 220 RVILNQVEVKRVAEDTGFEVT 240 (385)
Q Consensus 220 R~i~Ne~ev~~~l~~~gf~v~ 240 (385)
++=+|.+++++.|++.||+|+
T Consensus 58 ~~gid~d~l~~~L~~~g~~~~ 78 (81)
T 2fi0_A 58 LAGTPMDKIVRTLEANGYEVI 78 (81)
T ss_dssp HHTCCHHHHHHHHHHTTCEEE
T ss_pred HcCCCHHHHHHHHHHcCCEee
Confidence 445788999999999999997
No 65
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=31.60 E-value=86 Score=26.93 Aligned_cols=70 Identities=10% Similarity=0.182 Sum_probs=46.7
Q ss_pred CCCCeEEEEEccCC--------CCcccccHHHHHHHHHHCCCEEEEec--CCCCCCHHHHHHH-Hhc--CCEEEeechhh
Q 043548 204 STRPRLMLMSRRGG--------LGRVILNQVEVKRVAEDTGFEVTVFE--PTPKTSLRQAYAL-INS--SHAMVGVHGAA 270 (385)
Q Consensus 204 ~~~prv~~isR~~~--------~~R~i~Ne~ev~~~l~~~gf~v~~~~--~~~~~s~~eq~~l-~~~--advlVGvHGAg 270 (385)
.++||+.+|+=.+. ....=.|-.-+.+.|++.|++++... +++.-.+.+.++. ..+ +|++|-.=|.|
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittGG~s 92 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTG 92 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCS
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 36788888875531 12344566778899999999876322 3333456666654 344 89999999888
Q ss_pred hhh
Q 043548 271 LTH 273 (385)
Q Consensus 271 Ltn 273 (385)
.+-
T Consensus 93 ~g~ 95 (178)
T 2pjk_A 93 YSP 95 (178)
T ss_dssp SST
T ss_pred CCC
Confidence 764
No 66
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=31.45 E-value=71 Score=27.16 Aligned_cols=40 Identities=13% Similarity=0.243 Sum_probs=27.8
Q ss_pred HHHHHHHHHHCCCEEEEecCCCCC-C-----HHHHHHHHhcCCEEEee
Q 043548 225 QVEVKRVAEDTGFEVTVFEPTPKT-S-----LRQAYALINSSHAMVGV 266 (385)
Q Consensus 225 e~ev~~~l~~~gf~v~~~~~~~~~-s-----~~eq~~l~~~advlVGv 266 (385)
.+++.+.|++.|++|.. |.++. + +..=++.+.+||++|+.
T Consensus 29 ~~~l~~~l~~~G~~v~~--P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ 74 (161)
T 2f62_A 29 YNKVRELLKKENVMPLI--PTDNEATEALDIRQKNIQMIKDCDAVIAD 74 (161)
T ss_dssp HHHHHHHHHTTTCEEEC--TTTTCCSSHHHHHHHHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHHCCCEEEC--CCccCcchHHHHHHHHHHHHHhCCEEEEE
Confidence 36788889999998754 43222 1 44447889999998875
No 67
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Probab=31.09 E-value=1.4e+02 Score=27.57 Aligned_cols=53 Identities=17% Similarity=0.194 Sum_probs=38.8
Q ss_pred HHHhcCCEEEeechhhhhh-------hhccCCCcEEEEEeeCCccccccccHHHHHhhcCCcEE
Q 043548 255 ALINSSHAMVGVHGAALTH-------SLFLRPGSVFVQVVPLGLEWVAEVCFGTSAKAMGLDYM 311 (385)
Q Consensus 255 ~l~~~advlVGvHGAgLtn-------~lFl~pgs~viEi~P~g~~~~~~~~y~~~A~~~gl~Y~ 311 (385)
+.+..+|++|..-.+|+.. .-+++++.+|++++-.- ..+.|-..|+..|.+..
T Consensus 190 ~~l~~~DiVInaTp~Gm~~~~~~pi~~~~l~~~~~v~DlvY~P----~~T~ll~~A~~~G~~~~ 249 (283)
T 3jyo_A 190 DVIAAADGVVNATPMGMPAHPGTAFDVSCLTKDHWVGDVVYMP----IETELLKAARALGCETL 249 (283)
T ss_dssp HHHHHSSEEEECSSTTSTTSCSCSSCGGGCCTTCEEEECCCSS----SSCHHHHHHHHHTCCEE
T ss_pred HHHhcCCEEEECCCCCCCCCCCCCCCHHHhCCCCEEEEecCCC----CCCHHHHHHHHCcCeEe
Confidence 4567899999888777653 22567889999987321 35678889999998754
No 68
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Probab=30.33 E-value=1.5e+02 Score=28.35 Aligned_cols=91 Identities=12% Similarity=0.087 Sum_probs=56.2
Q ss_pred cccccHHHHHHHHHHCCCEEEEecCC----CCCCHHHHH-----------HHHhcCCEEEeechhhhhhhhccCCCcEEE
Q 043548 220 RVILNQVEVKRVAEDTGFEVTVFEPT----PKTSLRQAY-----------ALINSSHAMVGVHGAALTHSLFLRPGSVFV 284 (385)
Q Consensus 220 R~i~Ne~ev~~~l~~~gf~v~~~~~~----~~~s~~eq~-----------~l~~~advlVGvHGAgLtn~lFl~pgs~vi 284 (385)
||+-=-.+-++.|.+.|++|.+ |.+ ...+=+|.. +.+.+||+|+++-----.-...+.+|..++
T Consensus 14 ~Rv~ltP~~v~~L~~~G~~V~v-e~~ag~~~~f~d~~y~~aGa~i~~~~~~~~~~adii~~vk~p~~~e~~~l~~~~~l~ 92 (377)
T 2vhw_A 14 FRVAITPAGVAELTRRGHEVLI-QAGAGEGSAITDADFKAAGAQLVGTADQVWADADLLLKVKEPIAAEYGRLRHGQILF 92 (377)
T ss_dssp CCCSCCHHHHHHHHHTTCEEEE-ETTTTGGGTCCHHHHHHHTCEEESCHHHHHHHCSEEECSSCCCGGGGGGCCTTCEEE
T ss_pred cccCcCHHHHHHHHhCCCEEEE-eCCCCcCCCCCHHHHHHCCCEEecCHHHHhccCCEEEEeCCCChHHHhhcCCCCEEE
Confidence 5555456777888889999976 322 123322222 466789999998765555667778887776
Q ss_pred EEeeCCccccccccHHHHHhhcCCcEEEEEe
Q 043548 285 QVVPLGLEWVAEVCFGTSAKAMGLDYMEYKI 315 (385)
Q Consensus 285 Ei~P~g~~~~~~~~y~~~A~~~gl~Y~~y~~ 315 (385)
=....+ .....-..+...|++.+.|+.
T Consensus 93 ~~~~~~----~~~~~l~~l~~~gi~~ia~e~ 119 (377)
T 2vhw_A 93 TFLHLA----ASRACTDALLDSGTTSIAYET 119 (377)
T ss_dssp ECCCGG----GCHHHHHHHHHHTCEEEEGGG
T ss_pred EEeccc----CCHHHHHHHHHcCCeEEEeee
Confidence 543222 223333445567888887743
No 69
>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*
Probab=29.92 E-value=2.6e+02 Score=26.49 Aligned_cols=134 Identities=12% Similarity=0.108 Sum_probs=75.9
Q ss_pred HHHHHHHHHCCCEEEEecCCCCC------CHHHHHHHHhcCCEEEeech-----hhhhh---hhccCCCcEEEEEeeCCc
Q 043548 226 VEVKRVAEDTGFEVTVFEPTPKT------SLRQAYALINSSHAMVGVHG-----AALTH---SLFLRPGSVFVQVVPLGL 291 (385)
Q Consensus 226 ~ev~~~l~~~gf~v~~~~~~~~~------s~~eq~~l~~~advlVGvHG-----AgLtn---~lFl~pgs~viEi~P~g~ 291 (385)
..+++.++.+|++|+..++.... ...+.-+++..||+++-.=- -+|-| +--|+||+.+|-+---+.
T Consensus 161 ~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~ 240 (343)
T 2yq5_A 161 SAVAEIFSAMGAKVIAYDVAYNPEFEPFLTYTDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGEL 240 (343)
T ss_dssp HHHHHHHHHTTCEEEEECSSCCGGGTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGG
T ss_pred HHHHHHHhhCCCEEEEECCChhhhhhccccccCHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChh
Confidence 56778899999999988764221 11123457889999885432 12222 223899999997643221
Q ss_pred cccccccHHHHHh---hcCCcEEEEEecccccchhhhcCCC-----------CccccCCccc---cCCCcchhhhhhhhc
Q 043548 292 EWVAEVCFGTSAK---AMGLDYMEYKINAEESSLIEKYNKN-----------DTVIKDPVAF---RGKSWSDAAMNIYLK 354 (385)
Q Consensus 292 ~~~~~~~y~~~A~---~~gl~Y~~y~~~~~essl~~~y~~d-----------~~v~~dP~~~---~~~gw~~~~~~~yl~ 354 (385)
..-..+++ .-++......+-.+|.-. ++.+ ||.+..|..+ |--++
T Consensus 241 -----vd~~aL~~aL~~g~i~gA~LDV~~~EP~~---~~~~~~~~~~l~~~~~pL~~~~nvilTPHia~~---------- 302 (343)
T 2yq5_A 241 -----VDTGALIKALQDGEIAGAGLDTLAGESSY---FGHTGLTDSEIPEDYKTLAKMPNVVITPHSAFY---------- 302 (343)
T ss_dssp -----BCHHHHHHHHHHTSSSCEEESCCTTGGGT---TTCCSCCTTTSCHHHHHHTTCTTEEECSSCTTC----------
T ss_pred -----hhHHHHHHHHHcCCCcEEEecccccCCCc---cccccccccccccchhHHhcCCCEEECCccccc----------
Confidence 22233333 335666666665555421 1222 2344434321 43232
Q ss_pred CCceEEchHhHHHHHHHHHHHHHhhhhcC
Q 043548 355 EQNVKLDLFRFREYLKKVYKKAKRFMDKG 383 (385)
Q Consensus 355 ~Qdv~ldi~rF~~~L~~a~~~~~~~~~~~ 383 (385)
-.+....+...+++.+.+|+..+
T Consensus 303 ------t~ea~~~~~~~~~~ni~~~l~g~ 325 (343)
T 2yq5_A 303 ------TETSIRNMVQICLTDQLTIAKGG 325 (343)
T ss_dssp ------BHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ------hHHHHHHHHHHHHHHHHHHHcCC
Confidence 23456778888888999988654
No 70
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}
Probab=29.73 E-value=2.7e+02 Score=25.58 Aligned_cols=93 Identities=13% Similarity=0.110 Sum_probs=60.6
Q ss_pred CCeEEEEEccCCCCcccccHHHHHHHHHHCCC-EEEEecCCC-----------CCCHHHHHHHHhcCCEEEeechhhhhh
Q 043548 206 RPRLMLMSRRGGLGRVILNQVEVKRVAEDTGF-EVTVFEPTP-----------KTSLRQAYALINSSHAMVGVHGAALTH 273 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf-~v~~~~~~~-----------~~s~~eq~~l~~~advlVGvHGAgLtn 273 (385)
..+++++.-.+. -..++.+|.+.|. +|.+++-.. ..++.+.-+ + .+|++|..-.+|+..
T Consensus 122 ~k~vlvlGaGGa-------araia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~Gm~~ 192 (282)
T 3fbt_A 122 NNICVVLGSGGA-------ARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSN-L-KGDVIINCTPKGMYP 192 (282)
T ss_dssp TSEEEEECSSTT-------HHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSSTTSTT
T ss_pred CCEEEEECCcHH-------HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHh-c-cCCEEEECCccCccC
Confidence 347788876655 3567777888898 777765210 011222112 3 899999888777642
Q ss_pred --------hhccCCCcEEEEEeeCCccccccccHHHHHhhcCCcEE
Q 043548 274 --------SLFLRPGSVFVQVVPLGLEWVAEVCFGTSAKAMGLDYM 311 (385)
Q Consensus 274 --------~lFl~pgs~viEi~P~g~~~~~~~~y~~~A~~~gl~Y~ 311 (385)
.-+++++++|++++=. + ..+.|-..|+..|.+..
T Consensus 193 ~~~~~pi~~~~l~~~~~v~DlvY~---P-~~T~ll~~A~~~G~~~~ 234 (282)
T 3fbt_A 193 KEGESPVDKEVVAKFSSAVDLIYN---P-VETLFLKYARESGVKAV 234 (282)
T ss_dssp STTCCSSCHHHHTTCSEEEESCCS---S-SSCHHHHHHHHTTCEEE
T ss_pred CCccCCCCHHHcCCCCEEEEEeeC---C-CCCHHHHHHHHCcCeEe
Confidence 2246788999998621 1 35788899999998754
No 71
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=29.51 E-value=49 Score=30.55 Aligned_cols=82 Identities=10% Similarity=0.134 Sum_probs=50.5
Q ss_pred HHHHHHHHHCCCEEEEecCCCCC------------CHHHHHHHHhcCCEEEeechhhhhhh---hccCCCcEEEEEeeCC
Q 043548 226 VEVKRVAEDTGFEVTVFEPTPKT------------SLRQAYALINSSHAMVGVHGAALTHS---LFLRPGSVFVQVVPLG 290 (385)
Q Consensus 226 ~ev~~~l~~~gf~v~~~~~~~~~------------s~~eq~~l~~~advlVGvHGAgLtn~---lFl~pgs~viEi~P~g 290 (385)
..+++.++..|.+|.+.+..... +..+.-+++..||++|..-+.++.|- -.|+||+.+|-+.--.
T Consensus 170 ~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~~~i~~~~~~~mk~g~~lin~a~g~ 249 (300)
T 2rir_A 170 MTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPSMILNQTVLSSMTPKTLILDLASRP 249 (300)
T ss_dssp HHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSSCCBCHHHHTTSCTTCEEEECSSTT
T ss_pred HHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCChhhhCHHHHHhCCCCCEEEEEeCCC
Confidence 34556677777777776542100 01122345689999999887776542 2479999999885311
Q ss_pred ccccccccHHHHHhhcCCcEEE
Q 043548 291 LEWVAEVCFGTSAKAMGLDYME 312 (385)
Q Consensus 291 ~~~~~~~~y~~~A~~~gl~Y~~ 312 (385)
....+ ..+...|+.++.
T Consensus 250 ----~~~~~-~~a~~~G~~~i~ 266 (300)
T 2rir_A 250 ----GGTDF-KYAEKQGIKALL 266 (300)
T ss_dssp ----CSBCH-HHHHHHTCEEEE
T ss_pred ----CCcCH-HHHHHCCCEEEE
Confidence 11225 677788887763
No 72
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}
Probab=29.49 E-value=1e+02 Score=29.44 Aligned_cols=93 Identities=12% Similarity=0.191 Sum_probs=60.6
Q ss_pred CCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeechhhhhhhhcc--CCCcE
Q 043548 205 TRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHGAALTHSLFL--RPGSV 282 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHGAgLtn~lFl--~pgs~ 282 (385)
.+|++++.. .-. ++..+.+++. |++.+.......+-+|.++.+..+|++|...+..++--++- +|+-.
T Consensus 27 ~~~kvlv~~-~~~--------~~~~~~l~~~-~~v~~~~~~~~~~~~~l~~~~~~~d~li~~~~~~i~~~~l~~~~~~Lk 96 (345)
T 4g2n_A 27 PIQKAFLCR-RFT--------PAIEAELRQR-FDLEVNLEDTVLTPSGIASRAHGAEVLFVTATEAITAEVIRKLQPGLK 96 (345)
T ss_dssp CCCEEEESS-CCC--------HHHHHHHHHH-SEEEECTTCCCCCHHHHHHHTTTCSEEEECTTSCBCHHHHHHTTTTCC
T ss_pred CCCEEEEeC-CCC--------HHHHHHHHcc-CCEEEecCCCCCCHHHHHHHhcCCeEEEEeCCCCCCHHHHHhhcCCce
Confidence 578866532 221 4566666665 68876544445788888999999999998765666666665 57888
Q ss_pred EEEEeeCCccccccccHHHHHhhcCCcEE
Q 043548 283 FVQVVPLGLEWVAEVCFGTSAKAMGLDYM 311 (385)
Q Consensus 283 viEi~P~g~~~~~~~~y~~~A~~~gl~Y~ 311 (385)
+|...--|++.. . -..|+..|+...
T Consensus 97 ~I~~~~~G~D~i---d-~~~a~~~gI~V~ 121 (345)
T 4g2n_A 97 TIATLSVGYDHI---D-MAAARSLGIKVL 121 (345)
T ss_dssp EEEESSSCCTTB---C-HHHHHHTTCEEE
T ss_pred EEEEcCCccccc---C-HHHHHhCCEEEE
Confidence 888876676422 1 234555676544
No 73
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=28.86 E-value=51 Score=30.63 Aligned_cols=55 Identities=11% Similarity=0.204 Sum_probs=34.7
Q ss_pred cHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcC-----C---EEEeechhhhhhhhccCCC
Q 043548 224 NQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSS-----H---AMVGVHGAALTHSLFLRPG 280 (385)
Q Consensus 224 Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~a-----d---vlVGvHGAgLtn~lFl~pg 280 (385)
..+.|.+.++++||+|.+.+......+.+.++-+++- | +++.-||-. +.++...+
T Consensus 70 D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~~dh~~~d~~vv~ilSHG~~--g~i~g~D~ 132 (277)
T 4ehd_A 70 DAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSSFVCVLLSHGEE--GIIFGTNG 132 (277)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTSCCTTEEEEEEEEESCEET--TEEEETTE
T ss_pred HHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhhcccCCCEEEEEEEcCCCC--CEEEEeCC
Confidence 4567788999999999987632223344445555443 2 345558865 66666665
No 74
>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A
Probab=28.74 E-value=4.1e+02 Score=25.71 Aligned_cols=131 Identities=11% Similarity=0.011 Sum_probs=70.9
Q ss_pred HHHHHHHHHCCCEEEEecCCCCC-CHH---------HHHHHHhcCCEEEeech--h---hhhh---hhccCCCcEEEEEe
Q 043548 226 VEVKRVAEDTGFEVTVFEPTPKT-SLR---------QAYALINSSHAMVGVHG--A---ALTH---SLFLRPGSVFVQVV 287 (385)
Q Consensus 226 ~ev~~~l~~~gf~v~~~~~~~~~-s~~---------eq~~l~~~advlVGvHG--A---gLtn---~lFl~pgs~viEi~ 287 (385)
..+++.++.+|++|...+..... ... +--+++..||+++-.=- . +|-| +--|++|+.+|-+-
T Consensus 204 ~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a 283 (393)
T 2nac_A 204 LAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTA 283 (393)
T ss_dssp HHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECS
T ss_pred HHHHHHHHhCCCEEEEEcCCccchhhHhhcCceecCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECC
Confidence 45677888899999987754211 111 12357789999886432 1 2222 22489999998764
Q ss_pred eCCccccccccHHHHHhhc---CCcEEEEEecccccchhhhcCCCCccccCCccc---cCCCcchhhhhhhhcCCceEEc
Q 043548 288 PLGLEWVAEVCFGTSAKAM---GLDYMEYKINAEESSLIEKYNKNDTVIKDPVAF---RGKSWSDAAMNIYLKEQNVKLD 361 (385)
Q Consensus 288 P~g~~~~~~~~y~~~A~~~---gl~Y~~y~~~~~essl~~~y~~d~~v~~dP~~~---~~~gw~~~~~~~yl~~Qdv~ld 361 (385)
--++ ..-..+++.+ ++......+-..|- .+.+||.++.|..+ |-.+..
T Consensus 284 RG~~-----vde~aL~~aL~~g~i~gA~lDV~~~EP-----~~~~~pL~~~~nvilTPHia~~T---------------- 337 (393)
T 2nac_A 284 RGKL-----CDRDAVARALESGRLAGYAGDVWFPQP-----APKDHPWRTMPYNGMTPHISGTT---------------- 337 (393)
T ss_dssp CGGG-----BCHHHHHHHHHTTSEEEEEESCCSSSS-----CCTTCGGGTSTTBCCCCSCTTCS----------------
T ss_pred CchH-----hhHHHHHHHHHcCCeeEEEEEecCCCC-----CCCCChhHcCCCEEECCCCCcCc----------------
Confidence 2221 2223444433 24434333433332 25578777776542 543331
Q ss_pred hHhHHHHHHHHHHHHHhhhhc
Q 043548 362 LFRFREYLKKVYKKAKRFMDK 382 (385)
Q Consensus 362 i~rF~~~L~~a~~~~~~~~~~ 382 (385)
.+........+.+.+.+|+..
T Consensus 338 ~e~~~~~~~~~~~nl~~~~~G 358 (393)
T 2nac_A 338 LTAQARYAAGTREILECFFEG 358 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 233445556666777777654
No 75
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=28.74 E-value=86 Score=27.74 Aligned_cols=59 Identities=8% Similarity=0.026 Sum_probs=40.8
Q ss_pred CCCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCE-EEee
Q 043548 204 STRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHA-MVGV 266 (385)
Q Consensus 204 ~~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~adv-lVGv 266 (385)
..++++++..=.+- -.=+-..-+..+++..||+|+.+.. +.|.++.++.+...+. +||+
T Consensus 90 ~~~~~vll~~v~gd--~HdiG~~iv~~~l~~~G~~Vi~LG~--~vp~e~iv~~~~~~~~d~v~l 149 (215)
T 3ezx_A 90 EEAGLAITFVAEGD--IHDIGHRLVTTMLGANGFQIVDLGV--DVLNENVVEEAAKHKGEKVLL 149 (215)
T ss_dssp --CCEEEEEECTTC--CCCHHHHHHHHHHHHTSCEEEECCS--SCCHHHHHHHHHHTTTSCEEE
T ss_pred CCCCeEEEEeCCCC--hhHHHHHHHHHHHHHCCCeEEEcCC--CCCHHHHHHHHHHcCCCEEEE
Confidence 35788777665544 4555556677889999999997753 6899998888765543 4555
No 76
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=28.31 E-value=50 Score=28.25 Aligned_cols=52 Identities=8% Similarity=0.197 Sum_probs=34.0
Q ss_pred CeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCC---EEEee
Q 043548 207 PRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSH---AMVGV 266 (385)
Q Consensus 207 prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~ad---vlVGv 266 (385)
|++++|+-.++ + ...+++++++.|.+++++... .+.++..+.+...+ ++|+.
T Consensus 1 ~~i~iiDn~~s----~--~~~i~~~l~~~G~~~~v~~~~--~~~~~i~~~l~~~~~~~iil~g 55 (192)
T 1i1q_B 1 ADILLLDNIDS----F--TWNLADQLRTNGHNVVIYRNH--IPAQTLIDRLATMKNPVLMLSP 55 (192)
T ss_dssp CEEEEEECSCS----S--HHHHHHHHHHTTCEEEEEETT--SCSHHHHHHHTTCSSEEEEECC
T ss_pred CcEEEEECCcc----H--HHHHHHHHHHCCCeEEEEECC--CCHHHHHHHhhhccCCeEEECC
Confidence 57888883322 2 356688999999999888643 45555555555444 77665
No 77
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=28.20 E-value=31 Score=31.85 Aligned_cols=73 Identities=10% Similarity=0.064 Sum_probs=45.2
Q ss_pred CCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeec-hh---------hhhhhh
Q 043548 206 RPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVH-GA---------ALTHSL 275 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvH-GA---------gLtn~l 275 (385)
.+|+||+. ++ .-=.-.+.+.++|++.||+|.++++. .+.+....+++.|+||=.- ++ +|..
T Consensus 4 m~~vLiV~--g~--~~~~~a~~l~~aL~~~g~~V~~i~~~---~~~~~~~~L~~yDvIIl~d~~~~~l~~~~~~~L~~-- 74 (259)
T 3rht_A 4 MTRVLYCG--DT--SLETAAGYLAGLMTSWQWEFDYIPSH---VGLDVGELLAKQDLVILSDYPAERMTAQAIDQLVT-- 74 (259)
T ss_dssp --CEEEEE--SS--CTTTTHHHHHHHHHHTTCCCEEECTT---SCBCSSHHHHTCSEEEEESCCGGGBCHHHHHHHHH--
T ss_pred CceEEEEC--CC--CchhHHHHHHHHHHhCCceEEEeccc---ccccChhHHhcCCEEEEcCCccccCCHHHHHHHHH--
Confidence 36888885 32 21123466778999999999988753 2222345688999998653 22 2333
Q ss_pred ccCCCcEEEEEe
Q 043548 276 FLRPGSVFVQVV 287 (385)
Q Consensus 276 Fl~pgs~viEi~ 287 (385)
|...|..+|=+-
T Consensus 75 yV~~GGgLi~~g 86 (259)
T 3rht_A 75 MVKAGCGLVMLG 86 (259)
T ss_dssp HHHTTCEEEEEC
T ss_pred HHHhCCeEEEec
Confidence 345788887664
No 78
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=28.10 E-value=1.4e+02 Score=23.83 Aligned_cols=50 Identities=12% Similarity=0.185 Sum_probs=36.9
Q ss_pred CCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEee
Q 043548 206 RPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGV 266 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGv 266 (385)
..+++++..... .+++.+.+++.|..+.. . ..+-.+-.++++.||++|.+
T Consensus 32 ~~~l~i~G~g~~-------~~~~~~~~~~~~~~v~~-g---~~~~~~~~~~~~~adv~v~p 81 (166)
T 3qhp_A 32 DIVLLLKGKGPD-------EKKIKLLAQKLGVKAEF-G---FVNSNELLEILKTCTLYVHA 81 (166)
T ss_dssp GEEEEEECCSTT-------HHHHHHHHHHHTCEEEC-C---CCCHHHHHHHHTTCSEEEEC
T ss_pred CeEEEEEeCCcc-------HHHHHHHHHHcCCeEEE-e---ecCHHHHHHHHHhCCEEEEC
Confidence 456777765332 57888888888886654 3 47778888999999999864
No 79
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=28.08 E-value=1.7e+02 Score=26.36 Aligned_cols=57 Identities=28% Similarity=0.368 Sum_probs=38.5
Q ss_pred CCCeEEEEEccCCCCcccccHH----HHHHHHHHCCCEEEEecCCCCCC-----------HHHHHHHHhcCCEEEe
Q 043548 205 TRPRLMLMSRRGGLGRVILNQV----EVKRVAEDTGFEVTVFEPTPKTS-----------LRQAYALINSSHAMVG 265 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne~----ev~~~l~~~gf~v~~~~~~~~~s-----------~~eq~~l~~~advlVG 265 (385)
...++++|.=.. |+=-|-. .+++.+++.|.+|.+++.. +++ +.+.++.+..||.+|=
T Consensus 33 ~~mkIliI~GS~---r~~s~t~~La~~~~~~l~~~g~eve~idL~-~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~ 104 (247)
T 2q62_A 33 HRPRILILYGSL---RTVSYSRLLAEEARRLLEFFGAEVKVFDPS-GLPLPDAAPVSHPKVQELRELSIWSEGQVW 104 (247)
T ss_dssp SCCEEEEEECCC---CSSCHHHHHHHHHHHHHHHTTCEEEECCCT-TCCCTTSSCTTSHHHHHHHHHHHHCSEEEE
T ss_pred CCCeEEEEEccC---CCCCHHHHHHHHHHHHHhhCCCEEEEEEhh-cCCCCcCCCCCCHHHHHHHHHHHHCCEEEE
Confidence 456888887332 3323333 3445566679999988764 455 7888999999999874
No 80
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=28.07 E-value=1.1e+02 Score=25.26 Aligned_cols=52 Identities=17% Similarity=0.128 Sum_probs=33.2
Q ss_pred CeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEE-ecCCCCCCHHHHHHHHhcCCEEEeec
Q 043548 207 PRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTV-FEPTPKTSLRQAYALINSSHAMVGVH 267 (385)
Q Consensus 207 prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~-~~~~~~~s~~eq~~l~~~advlVGvH 267 (385)
.+++++..... ...+++.+.+++.+ .|.. .. ..+-++-.++++.||++|.+.
T Consensus 71 ~~l~i~G~~~~-----~~~~~l~~~~~~~~-~v~~~~g---~~~~~~~~~~~~~ad~~l~ps 123 (200)
T 2bfw_A 71 MRFIIIGKGDP-----ELEGWARSLEEKHG-NVKVITE---MLSREFVRELYGSVDFVIIPS 123 (200)
T ss_dssp EEEEEECCBCH-----HHHHHHHHHHHHCT-TEEEECS---CCCHHHHHHHHTTCSEEEECC
T ss_pred eEEEEECCCCh-----HHHHHHHHHHHhcC-CEEEEec---cCCHHHHHHHHHHCCEEEECC
Confidence 45666654320 01356667777777 5555 32 467788888899999888643
No 81
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*
Probab=27.86 E-value=3.8e+02 Score=25.11 Aligned_cols=138 Identities=16% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCEEEEecCCCCCC-----HHHHHHHHhcCCEEEeechhh-hhhhhc-------cCCCcEEEEEeeCCcc
Q 043548 226 VEVKRVAEDTGFEVTVFEPTPKTS-----LRQAYALINSSHAMVGVHGAA-LTHSLF-------LRPGSVFVQVVPLGLE 292 (385)
Q Consensus 226 ~ev~~~l~~~gf~v~~~~~~~~~s-----~~eq~~l~~~advlVGvHGAg-Ltn~lF-------l~pgs~viEi~P~g~~ 292 (385)
..+++.+++.|++|...+...... ..+.-+++..||+++-.=-.. -|.-++ |+||+.+|-+---+.
T Consensus 177 ~~vA~~l~~~G~~V~~~dr~~~~~~g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~- 255 (333)
T 3ba1_A 177 LAVAERAEAFDCPISYFSRSKKPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPH- 255 (333)
T ss_dssp HHHHHHHHTTTCCEEEECSSCCTTCCSEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGG-
T ss_pred HHHHHHHHHCCCEEEEECCCchhccCceecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCch-
Q ss_pred ccccccHHHHHhhcCCcEEEEEecccccchhhhcCCCCccccCCccccCCCcchhhhhhhhcCCceEEchHhHHHHHHHH
Q 043548 293 WVAEVCFGTSAKAMGLDYMEYKINAEESSLIEKYNKNDTVIKDPVAFRGKSWSDAAMNIYLKEQNVKLDLFRFREYLKKV 372 (385)
Q Consensus 293 ~~~~~~y~~~A~~~gl~Y~~y~~~~~essl~~~y~~d~~v~~dP~~~~~~gw~~~~~~~yl~~Qdv~ldi~rF~~~L~~a 372 (385)
.....-....+.-++......+-..|-......-....++-.| |-.|. ..+........+
T Consensus 256 -vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~L~~~~nviltP---H~~~~----------------t~e~~~~~~~~~ 315 (333)
T 3ba1_A 256 -VDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLP---HVGSG----------------TVETRKVMADLV 315 (333)
T ss_dssp -BCHHHHHHHHHHTSSCEEEESCCTTTTCCCGGGGGCTTEEECS---SCTTC----------------SHHHHHHHHHHH
T ss_pred -hCHHHHHHHHHcCCCeEEEEecCCCCCCCcchhhcCCCEEECC---cCCCC----------------CHHHHHHHHHHH
Q ss_pred HHHHHhhhhcCC
Q 043548 373 YKKAKRFMDKGE 384 (385)
Q Consensus 373 ~~~~~~~~~~~~ 384 (385)
.+.+.+|+..+.
T Consensus 316 ~~nl~~~~~g~~ 327 (333)
T 3ba1_A 316 VGNLEAHFSGKP 327 (333)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHcCCC
No 82
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*
Probab=27.73 E-value=56 Score=32.57 Aligned_cols=71 Identities=13% Similarity=0.122 Sum_probs=44.8
Q ss_pred CeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCC------------CCCHHHHHHHHhcCCEEEeech-hhhh-
Q 043548 207 PRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTP------------KTSLRQAYALINSSHAMVGVHG-AALT- 272 (385)
Q Consensus 207 prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~------------~~s~~eq~~l~~~advlVGvHG-AgLt- 272 (385)
-+++++.-..- =..+++.|+.+|.+|++.+... ..+++ +++..|||+|..-| .++-
T Consensus 221 ktV~ViG~G~I-------Gk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v~~Le---eal~~ADIVi~atgt~~lI~ 290 (435)
T 3gvp_A 221 KQVVVCGYGEV-------GKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLN---EVIRQVDIVITCTGNKNVVT 290 (435)
T ss_dssp CEEEEECCSHH-------HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHH---HHTTTCSEEEECSSCSCSBC
T ss_pred CEEEEEeeCHH-------HHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEeccHH---HHHhcCCEEEECCCCcccCC
Confidence 35666654332 1456677888898888876321 12333 36679999999755 2232
Q ss_pred --hhhccCCCcEEEEEe
Q 043548 273 --HSLFLRPGSVFVQVV 287 (385)
Q Consensus 273 --n~lFl~pgs~viEi~ 287 (385)
.+--|++|+.||-+-
T Consensus 291 ~e~l~~MK~gailINvg 307 (435)
T 3gvp_A 291 REHLDRMKNSCIVCNMG 307 (435)
T ss_dssp HHHHHHSCTTEEEEECS
T ss_pred HHHHHhcCCCcEEEEec
Confidence 344589999998763
No 83
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=27.65 E-value=43 Score=28.47 Aligned_cols=50 Identities=12% Similarity=0.302 Sum_probs=34.3
Q ss_pred cHHHHHHHHHHCCCEEEEec--CCCCCCHHHHHHHH---hcCCEEEeechhhhhh
Q 043548 224 NQVEVKRVAEDTGFEVTVFE--PTPKTSLRQAYALI---NSSHAMVGVHGAALTH 273 (385)
Q Consensus 224 Ne~ev~~~l~~~gf~v~~~~--~~~~~s~~eq~~l~---~~advlVGvHGAgLtn 273 (385)
|-.-|.+.|++.|++|+... +++.-.+.+.++.. ..+|++|.-=|.|.|.
T Consensus 41 ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG~g~~~ 95 (178)
T 3iwt_A 41 SGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGYSP 95 (178)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSSST
T ss_pred hHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCCcccCC
Confidence 45668899999999875322 33223455555533 4689999999998774
No 84
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=27.31 E-value=41 Score=31.88 Aligned_cols=56 Identities=13% Similarity=0.299 Sum_probs=34.3
Q ss_pred ccHHHHHHHHHHCCCEEEEecCCCCCCHHHH---HHHHh------cCC---EEEeechhhhh--hhhccCCCc
Q 043548 223 LNQVEVKRVAEDTGFEVTVFEPTPKTSLRQA---YALIN------SSH---AMVGVHGAALT--HSLFLRPGS 281 (385)
Q Consensus 223 ~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq---~~l~~------~ad---vlVGvHGAgLt--n~lFl~pgs 281 (385)
...+.|.+.++++||+|.+.+ +++..|- ++-++ .+| +++.-||-... |.++...|.
T Consensus 84 ~D~~~L~~~f~~LGF~V~~~~---dlt~~em~~~l~~f~~~~h~~~~D~~vv~ilSHG~~~~g~g~i~g~D~~ 153 (316)
T 2fp3_A 84 KDSKSLIHLFQELNFTIFPYG---NVNQDQFFKLLTMVTSSSYVQNTECFVMVLMTHGNSVEGKEKVEFRDGS 153 (316)
T ss_dssp HHHHHHHHHHHHTTEEEEEEC---SCCHHHHHHHHHHHHTSHHHHTCSCEEEEEESCEECCTTCCEEECTTSC
T ss_pred HHHHHHHHHHHHCCCEEEEcc---CCCHHHHHHHHHHHHHHhhcCCCCEEEEEEccCCCccCCCCEEEeecCc
Confidence 345677889999999999875 4554443 33332 344 45566874321 566665554
No 85
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=27.05 E-value=98 Score=26.13 Aligned_cols=68 Identities=15% Similarity=0.162 Sum_probs=45.9
Q ss_pred CCCeEEEEEccCCCCcccc--cHHHHHHHHHHCCCEEEEe--cCCCCCCHHHHHHHH-h--cCCEEEeechhhhhh
Q 043548 205 TRPRLMLMSRRGGLGRVIL--NQVEVKRVAEDTGFEVTVF--EPTPKTSLRQAYALI-N--SSHAMVGVHGAALTH 273 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~--Ne~ev~~~l~~~gf~v~~~--~~~~~~s~~eq~~l~-~--~advlVGvHGAgLtn 273 (385)
++||+-+|+=.+.. -++. |-.-+.+.|++.|+++... -+++.-.+.+.++.. . ++|++|-.=|.|.+.
T Consensus 12 ~~~rv~Ii~tGdEl-g~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g~ 86 (169)
T 1y5e_A 12 KEVRCKIVTISDTR-TEETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTGITK 86 (169)
T ss_dssp CCCEEEEEEECSSC-CTTTCHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCCSSST
T ss_pred cCCEEEEEEEcCcc-CeeccChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCCC
Confidence 56888888754432 2343 5567788999999987532 233334566776654 4 699999999998764
No 86
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=27.01 E-value=44 Score=28.86 Aligned_cols=69 Identities=13% Similarity=0.060 Sum_probs=45.3
Q ss_pred CCeEEEEEccC---CCCcccccHHHHHHHHHHCCCEEEEec--CCCCCCHHHHHHH-HhcCCEEEeechhhhhhh
Q 043548 206 RPRLMLMSRRG---GLGRVILNQVEVKRVAEDTGFEVTVFE--PTPKTSLRQAYAL-INSSHAMVGVHGAALTHS 274 (385)
Q Consensus 206 ~prv~~isR~~---~~~R~i~Ne~ev~~~l~~~gf~v~~~~--~~~~~s~~eq~~l-~~~advlVGvHGAgLtn~ 274 (385)
++|+.+|+=.+ ...+.=.|-.-+.+.|++.|+++.... +++.-.+.+.++. ..++|++|..=|.|.|.-
T Consensus 3 ~~~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVittGG~g~~~~ 77 (172)
T 3kbq_A 3 AKNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSSGGLGPTFD 77 (172)
T ss_dssp -CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEEESCCSSSTT
T ss_pred CCEEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEcCCCcCCcc
Confidence 46666665332 112444577788899999999875322 3334456666654 467999999999998754
No 87
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=26.97 E-value=96 Score=30.51 Aligned_cols=55 Identities=18% Similarity=0.303 Sum_probs=0.0
Q ss_pred HHHHHHHCCCEEEEecCCCCCCHHHHHHHH-----------------------------------------hcCCEEEee
Q 043548 228 VKRVAEDTGFEVTVFEPTPKTSLRQAYALI-----------------------------------------NSSHAMVGV 266 (385)
Q Consensus 228 v~~~l~~~gf~v~~~~~~~~~s~~eq~~l~-----------------------------------------~~advlVGv 266 (385)
+++.++..|.+|++++. ...-.++++-+ ..|||+|+.
T Consensus 205 aa~~a~~lGa~V~v~D~--~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~l~e~l~~aDVVI~t 282 (405)
T 4dio_A 205 AIATARRLGAVVSATDV--RPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAALVAEHIAKQDIVITT 282 (405)
T ss_dssp HHHHHHHTTCEEEEECS--STTHHHHHHHTTCEECCCCC-----------------CHHHHHHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHCCCEEEEEcC--CHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHhHHHHHhcCCCEEEEC
Q ss_pred chhh-------hhhhhc--cCCCcEEE
Q 043548 267 HGAA-------LTHSLF--LRPGSVFV 284 (385)
Q Consensus 267 HGAg-------Ltn~lF--l~pgs~vi 284 (385)
.+.- +|.-++ |+||++||
T Consensus 283 vlipg~~ap~Lvt~emv~~Mk~GsVIV 309 (405)
T 4dio_A 283 ALIPGRPAPRLVTREMLDSMKPGSVVV 309 (405)
T ss_dssp CCCSSSCCCCCBCHHHHTTSCTTCEEE
T ss_pred CcCCCCCCCEEecHHHHhcCCCCCEEE
No 88
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=26.93 E-value=68 Score=31.33 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=23.4
Q ss_pred HHHHhcCCEEEeec---hhh----hhhhh--ccCCCcEEEEEe
Q 043548 254 YALINSSHAMVGVH---GAA----LTHSL--FLRPGSVFVQVV 287 (385)
Q Consensus 254 ~~l~~~advlVGvH---GAg----Ltn~l--Fl~pgs~viEi~ 287 (385)
.+.+..|||+|+.. |+. ++.-+ -|+||++||-+-
T Consensus 260 ~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA 302 (381)
T 3p2y_A 260 EDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLA 302 (381)
T ss_dssp HHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred HHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEe
Confidence 46779999999864 321 22222 279999999885
No 89
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*
Probab=26.32 E-value=90 Score=29.54 Aligned_cols=81 Identities=10% Similarity=0.076 Sum_probs=52.2
Q ss_pred HHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeechhhhhhhhcc-CCCcEEEEEeeCCccccccccHHHHHh
Q 043548 226 VEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHGAALTHSLFL-RPGSVFVQVVPLGLEWVAEVCFGTSAK 304 (385)
Q Consensus 226 ~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHGAgLtn~lFl-~pgs~viEi~P~g~~~~~~~~y~~~A~ 304 (385)
++..+.|++.| +++........+-+|.++.+..+|++|+..+.-++--++- -|+-.+|...--|++.. . -..|.
T Consensus 13 ~~~~~~l~~~~-~v~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~i~~~~l~~~~~Lk~I~~~~~G~d~i---d-~~~~~ 87 (330)
T 4e5n_A 13 EEILQLLAPHC-ELITNQTDSTLTREEILRRCRDAQAMMAFMPDRVDADFLQACPELRVIGCALKGFDNF---D-VDACT 87 (330)
T ss_dssp HHHHHHHTTTC-EEECCCSSSCCCHHHHHHHHTTCSEEEECTTCCBCHHHHHHCTTCCEEEESSSCCTTB---C-HHHHH
T ss_pred HHHHHHHHhCC-eEEEecCCCCCCHHHHHHHhCCCeEEEEeCCCCCCHHHHhhCCCCcEEEECCCccccc---C-HHHHH
Confidence 56677787776 7765443345678888999999999998655455544443 26778888777676432 1 23445
Q ss_pred hcCCcEE
Q 043548 305 AMGLDYM 311 (385)
Q Consensus 305 ~~gl~Y~ 311 (385)
..|+...
T Consensus 88 ~~gI~v~ 94 (330)
T 4e5n_A 88 ARGVWLT 94 (330)
T ss_dssp HTTCEEE
T ss_pred hcCcEEE
Confidence 5666544
No 90
>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}
Probab=26.05 E-value=2e+02 Score=26.31 Aligned_cols=48 Identities=19% Similarity=0.071 Sum_probs=35.7
Q ss_pred hcCCEEEeechhhhhhh------hccCCCcEEEEEeeCCccccccccHHHHHhhcCCc
Q 043548 258 NSSHAMVGVHGAALTHS------LFLRPGSVFVQVVPLGLEWVAEVCFGTSAKAMGLD 309 (385)
Q Consensus 258 ~~advlVGvHGAgLtn~------lFl~pgs~viEi~P~g~~~~~~~~y~~~A~~~gl~ 309 (385)
..+|++|..-.+|+..- =+++++++|+.++-. + ..+.|-..|+..|.+
T Consensus 180 ~~~DivInaTp~gm~~~~~~i~~~~l~~~~~V~DlvY~---P-~~T~ll~~A~~~G~~ 233 (272)
T 3pwz_A 180 QSFDIVVNATSASLTADLPPLPADVLGEAALAYELAYG---K-GLTPFLRLAREQGQA 233 (272)
T ss_dssp CCCSEEEECSSGGGGTCCCCCCGGGGTTCSEEEESSCS---C-CSCHHHHHHHHHSCC
T ss_pred cCCCEEEECCCCCCCCCCCCCCHHHhCcCCEEEEeecC---C-CCCHHHHHHHHCCCC
Confidence 57999999888887532 246788999998621 1 246688889999987
No 91
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Probab=25.29 E-value=2.9e+02 Score=26.27 Aligned_cols=93 Identities=11% Similarity=0.061 Sum_probs=55.3
Q ss_pred cccccHHHHHHHHHHCCCEEEEecCC---CCCCHHHHH-----------HHHhcCCEEEeechh-----hhhhhhccCCC
Q 043548 220 RVILNQVEVKRVAEDTGFEVTVFEPT---PKTSLRQAY-----------ALINSSHAMVGVHGA-----ALTHSLFLRPG 280 (385)
Q Consensus 220 R~i~Ne~ev~~~l~~~gf~v~~~~~~---~~~s~~eq~-----------~l~~~advlVGvHGA-----gLtn~lFl~pg 280 (385)
||+-=-.+.++.|.+.|++|.+-... ...+=.+-. +.+.+||++|++.-- .-..+-.+++|
T Consensus 14 ~Rv~l~P~~v~~L~~~G~~V~ve~~ag~~~~~~d~~y~~aGa~i~~~~~~~~~~adiil~v~~p~~~~~~~~~i~~l~~~ 93 (384)
T 1l7d_A 14 DRVAISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAEEGTDEVALIKEG 93 (384)
T ss_dssp CCCSCCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEEECCCCGGGSCCGGGGSCTT
T ss_pred cccCCCHHHHHHHHhCCCEEEEEcCCCccCCCCHHHHHHCCCEEecChhhhhcCCCEEEEecCcccccCCHHHHHhhccC
Confidence 44444466677778899999763211 123322222 467899999998543 11234457889
Q ss_pred cEEEEEeeCCccccccccHHHHHhhcCCcEEEEEec
Q 043548 281 SVFVQVVPLGLEWVAEVCFGTSAKAMGLDYMEYKIN 316 (385)
Q Consensus 281 s~viEi~P~g~~~~~~~~y~~~A~~~gl~Y~~y~~~ 316 (385)
..++-....+. ....-..+...|+....|+..
T Consensus 94 ~~~i~~~~~~~----~~~~~~~~~~~gi~~~~~e~~ 125 (384)
T 1l7d_A 94 AVLMCHLGALT----NRPVVEALTKRKITAYAMELM 125 (384)
T ss_dssp CEEEEECCGGG----CHHHHHHHHHTTCEEEEGGGC
T ss_pred CEEEEEecccC----CHHHHHHHHHCCCEEEEeccc
Confidence 88885544332 233345567788888876543
No 92
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=25.25 E-value=2.3e+02 Score=26.01 Aligned_cols=55 Identities=15% Similarity=0.245 Sum_probs=32.5
Q ss_pred CCCeEEEEEccCCCCcccccH-HHHHHHHHHCC-CEEEEecCCC---C-CCHHHHHHHHhcCCEEE
Q 043548 205 TRPRLMLMSRRGGLGRVILNQ-VEVKRVAEDTG-FEVTVFEPTP---K-TSLRQAYALINSSHAMV 264 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne-~ev~~~l~~~g-f~v~~~~~~~---~-~s~~eq~~l~~~advlV 264 (385)
++.|+|+|+.... .. +... +.|.+.|++.| |+|.+.+... + -.|.+ .+++.|+||
T Consensus 3 ~~~kvLiv~G~~~-H~-~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~~---~L~~~D~vV 63 (281)
T 4e5v_A 3 KPIKTLLITGQNN-HN-WQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFVL---DFSPYQLVV 63 (281)
T ss_dssp CCEEEEEEESCCS-SC-HHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCCC---CCTTCSEEE
T ss_pred CceEEEEEcCCCC-CC-hHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHhh---hhhcCCEEE
Confidence 5678999977653 22 3332 45567778887 9998876320 0 11211 356777777
No 93
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=25.23 E-value=51 Score=30.59 Aligned_cols=65 Identities=12% Similarity=0.174 Sum_probs=42.7
Q ss_pred CCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHH---HHHhc------CC---EEEeechhhhhh
Q 043548 206 RPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAY---ALINS------SH---AMVGVHGAALTH 273 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~---~l~~~------ad---vlVGvHGAgLtn 273 (385)
+-..+||++.+. ..+.|.+.++++||+|.+.+ +++..|-. +-+++ +| ++|--||- -+
T Consensus 43 rG~~LIinn~~~------D~~~L~~~f~~LgF~V~~~~---dlt~~em~~~l~~~~~~~dh~~~d~~v~~ilSHG~--~g 111 (272)
T 3h11_A 43 LGICLIIDCIGN------ETELLRDTFTSLGYEVQKFL---HLSMHGISQILGQFACMPEHRDYDSFVCVLVSRGG--SQ 111 (272)
T ss_dssp SEEEEEEESSCC------CCSHHHHHHHHHTEEEEEEE---SCBHHHHHHHHHHHHTCGGGGGCSEEEEEEEEEEE--TT
T ss_pred ceEEEEECCchH------HHHHHHHHHHHCCCEEEEee---CCCHHHHHHHHHHHHhccccCCCCEEEEEEEcCCC--CC
Confidence 345688887653 45678899999999999876 46655444 33333 22 46777886 36
Q ss_pred hhccCCCc
Q 043548 274 SLFLRPGS 281 (385)
Q Consensus 274 ~lFl~pgs 281 (385)
.++...|.
T Consensus 112 ~i~g~D~~ 119 (272)
T 3h11_A 112 SVYGVDQT 119 (272)
T ss_dssp EECBTSCC
T ss_pred eEEEEcCC
Confidence 66666553
No 94
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=24.50 E-value=1.5e+02 Score=27.43 Aligned_cols=88 Identities=16% Similarity=0.138 Sum_probs=52.3
Q ss_pred CCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeechhhhh-hhh--ccCCCc
Q 043548 205 TRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHGAALT-HSL--FLRPGS 281 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHGAgLt-n~l--Fl~pgs 281 (385)
.+-++.++.+... . .+++.+.|++.|+++.+.+.. . ..+..+|++|.+=|-|.- +.. +.+. .
T Consensus 28 ~~mki~iv~~~~~--~----~~~l~~~L~~~g~~v~~~~~~--~------~~~~~~DlvIvlGGDGT~L~aa~~~~~~-~ 92 (278)
T 1z0s_A 28 GGMRAAVVYKTDG--H----VKRIEEALKRLEVEVELFNQP--S------EELENFDFIVSVGGDGTILRILQKLKRC-P 92 (278)
T ss_dssp --CEEEEEESSST--T----HHHHHHHHHHTTCEEEEESSC--C------GGGGGSSEEEEEECHHHHHHHHTTCSSC-C
T ss_pred cceEEEEEeCCcH--H----HHHHHHHHHHCCCEEEEcccc--c------cccCCCCEEEEECCCHHHHHHHHHhCCC-C
Confidence 3457888888765 2 788999999999999875421 1 134589999998887744 222 2233 4
Q ss_pred EEEEEeeC--C--ccccccccHHHHHhhcC
Q 043548 282 VFVQVVPL--G--LEWVAEVCFGTSAKAMG 307 (385)
Q Consensus 282 ~viEi~P~--g--~~~~~~~~y~~~A~~~g 307 (385)
-|+=|-.- | .++........+.+.+.
T Consensus 93 PilGIN~G~lGFLt~~~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 93 PIFGINTGRVGLLTHASPENFEVELKKAVE 122 (278)
T ss_dssp CEEEEECSSSCTTCCBBTTBCHHHHHHHHH
T ss_pred cEEEECCCCCccccccCHHHHHHHHHHHHh
Confidence 55555421 2 12222334455555544
No 95
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=24.47 E-value=1.1e+02 Score=26.19 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=32.3
Q ss_pred eEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEee
Q 043548 208 RLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGV 266 (385)
Q Consensus 208 rv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGv 266 (385)
+|++|+=.. -|...|.++|+++|.+++++.. .+ .+.++|.||-+
T Consensus 4 ~I~iiD~g~------~n~~si~~al~~~G~~~~v~~~------~~---~l~~~D~lilP 47 (211)
T 4gud_A 4 NVVIIDTGC------ANISSVKFAIERLGYAVTISRD------PQ---VVLAADKLFLP 47 (211)
T ss_dssp CEEEECCCC------TTHHHHHHHHHHTTCCEEEECC------HH---HHHHCSEEEEC
T ss_pred EEEEEECCC------ChHHHHHHHHHHCCCEEEEECC------HH---HHhCCCEEEEC
Confidence 577776433 3788899999999999987631 23 35678988876
No 96
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=24.08 E-value=48 Score=33.05 Aligned_cols=100 Identities=14% Similarity=0.035 Sum_probs=68.8
Q ss_pred CCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecC------------------CCCCCHHHHHHHHhcCCEEEee
Q 043548 205 TRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEP------------------TPKTSLRQAYALINSSHAMVGV 266 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~------------------~~~~s~~eq~~l~~~advlVGv 266 (385)
.+++|-||. +. .-.--+..|+.+.|++.|.+++.+-. ....+ -++++-+.+|++-|.+
T Consensus 168 ~~~~VNii~--G~-~~~~~D~~eik~lL~~~Gi~v~~~~d~s~~ld~~~~~~~~~~~~~gg~~-~~ei~~~~~A~~ni~~ 243 (458)
T 3pdi_B 168 RPRQVNVLC--SA-NLTPGDLEYIAESIESFGLRPLLIPDLSGSLDGHLDENRFNALTTGGLS-VAELATAGQSVATLVV 243 (458)
T ss_dssp CSSEEEEEE--CT-TCCHHHHHHHHHHHHTTTCEEEEESCHHHHSSSCCCSSCCTTCCSCSBC-HHHHGGGSSCSCEEEE
T ss_pred CCCeEEEEe--CC-CCChHHHHHHHHHHHHcCCEEEEecCccccccCccccccccccCCCCCC-HHHHHhhhhCcEEEEe
Confidence 456787773 11 12234568999999999999987620 01223 4667788888888888
Q ss_pred chhhhhhhhccC--CCcEEEEE-eeCCccccccccHHHHHhhcCCc
Q 043548 267 HGAALTHSLFLR--PGSVFVQV-VPLGLEWVAEVCFGTSAKAMGLD 309 (385)
Q Consensus 267 HGAgLtn~lFl~--pgs~viEi-~P~g~~~~~~~~y~~~A~~~gl~ 309 (385)
+..+..-.-+|. =|.-.+++ .|.|++. ...+...+|+..|..
T Consensus 244 ~~~~~~~A~~Le~~~GiP~~~~~~p~G~~~-T~~~l~~la~~~g~~ 288 (458)
T 3pdi_B 244 GQSLAGAADALAERTGVPDRRFGMLYGLDA-VDAWLMALAEISGNP 288 (458)
T ss_dssp SGGGHHHHHHHHHHSCCCEEEECCSCHHHH-HHHHHHHHHHHHSSC
T ss_pred cHHHHHHHHHHHHHHCCCEEecCCCcCHHH-HHHHHHHHHHHHCCc
Confidence 877655555663 47788887 6888643 357889999999974
No 97
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=23.82 E-value=60 Score=27.54 Aligned_cols=68 Identities=7% Similarity=0.010 Sum_probs=44.8
Q ss_pred CCCeEEEEEccCC---CCcccccHHHHHHHHHHCCCEEEE--ecCCCCCCHHHHHHHH-h-cCCEEEeechhhhhh
Q 043548 205 TRPRLMLMSRRGG---LGRVILNQVEVKRVAEDTGFEVTV--FEPTPKTSLRQAYALI-N-SSHAMVGVHGAALTH 273 (385)
Q Consensus 205 ~~prv~~isR~~~---~~R~i~Ne~ev~~~l~~~gf~v~~--~~~~~~~s~~eq~~l~-~-~advlVGvHGAgLtn 273 (385)
++||+.+|+=.+. ....=.|-.-+.+.|++.|++++. +-+++ -.+.+.++.. . .+|++|-.=|.|.+-
T Consensus 6 ~~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittGG~s~g~ 80 (164)
T 3pzy_A 6 TTRSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSGGTGIAP 80 (164)
T ss_dssp -CCEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEESCCSSST
T ss_pred CCCEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECCCCCCCC
Confidence 5688877775432 113445677888999999998742 12444 5677776554 3 799999999988764
No 98
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=23.70 E-value=87 Score=31.73 Aligned_cols=103 Identities=18% Similarity=0.172 Sum_probs=69.7
Q ss_pred CCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeech-hhhhhhhccC--CCc
Q 043548 205 TRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHG-AALTHSLFLR--PGS 281 (385)
Q Consensus 205 ~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHG-AgLtn~lFl~--pgs 281 (385)
.+++|-||.=.......--|..|+.+.|++.|.+++.+-+. ..++ ++++-+.+|++-|.++- +|..-.=+|. =|.
T Consensus 152 ~~~~VNIlG~~~~g~~~~gD~~eikrlL~~~Gi~v~~~~pg-g~t~-~ei~~~~~A~~niv~~~~~g~~~A~~Le~r~Gi 229 (525)
T 3aek_B 152 PEVTCNLLGATALGFRHRDDVAEVTKLLATMGIKVNVCAPL-GASP-DDLRKLGQAHFNVLMYPETGESAARHLERACKQ 229 (525)
T ss_dssp SSCEEEEEEECTTCTTHHHHHHHHHHHHHTTTCEEEEEEET-TCCH-HHHHTGGGSSEEEECCHHHHHHHHHHHHHHSCC
T ss_pred CCCceEEEecCCCCCCChhhHHHHHHHHHHCCCeEEEEeCC-CCCH-HHHHhhccCCEEEEEChhhHHHHHHHHHHHcCC
Confidence 45678888654321222345688999999999999874342 4454 56677888888887763 4555455553 355
Q ss_pred EEEEEeeCCccccccccHHHHHhhcCCcE
Q 043548 282 VFVQVVPLGLEWVAEVCFGTSAKAMGLDY 310 (385)
Q Consensus 282 ~viEi~P~g~~~~~~~~y~~~A~~~gl~Y 310 (385)
-.++..|.|++. ...+...+|+..|...
T Consensus 230 P~i~~~PiG~~~-T~~~Lr~ia~~~g~~~ 257 (525)
T 3aek_B 230 PFTKIVPIGVGA-TRDFLAEVSKITGLPV 257 (525)
T ss_dssp CBCCCCCCSHHH-HHHHHHHHHHHHCCCC
T ss_pred CceecCCcCHHH-HHHHHHHHHHHHCCCH
Confidence 666668999643 3578899999999875
No 99
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=23.61 E-value=63 Score=27.67 Aligned_cols=29 Identities=10% Similarity=0.221 Sum_probs=20.8
Q ss_pred cHHHHHHHHHHCCCEEEEecCCCCCCHHHHHH
Q 043548 224 NQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYA 255 (385)
Q Consensus 224 Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~ 255 (385)
..+.|.+.++++||+|.+.+ +++..|-.+
T Consensus 59 D~~~L~~~f~~LgF~V~~~~---dlt~~em~~ 87 (167)
T 1pyo_A 59 DHSTLVTLFKLLGYDVHVLC---DQTAQEMQE 87 (167)
T ss_dssp HHHHHHHHHHHTTEEEEEEE---SCCHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEee---CCCHHHHHH
Confidence 45577788999999998875 566554443
No 100
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=23.41 E-value=96 Score=26.92 Aligned_cols=40 Identities=18% Similarity=0.114 Sum_probs=29.6
Q ss_pred HHHHHHHHHCCCEEEEecC-----CCCCCHHHHHHHHhcCCEEEe
Q 043548 226 VEVKRVAEDTGFEVTVFEP-----TPKTSLRQAYALINSSHAMVG 265 (385)
Q Consensus 226 ~ev~~~l~~~gf~v~~~~~-----~~~~s~~eq~~l~~~advlVG 265 (385)
+.+++.+++.|.+|.+.+. +..-++.+..+.+..||+||=
T Consensus 20 ~~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~ 64 (192)
T 3f2v_A 20 KHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVW 64 (192)
T ss_dssp HHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEE
T ss_pred HHHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEE
Confidence 5667778888887776652 224578889999999998774
No 101
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=22.88 E-value=53 Score=28.65 Aligned_cols=72 Identities=17% Similarity=0.150 Sum_probs=49.1
Q ss_pred CCCCeEEEEEccCC--CCcccccHHHHHHHHHHCCCEEEEec--CCCCCCHHHHHHHH--hcCCEEEeechhhhhhhh
Q 043548 204 STRPRLMLMSRRGG--LGRVILNQVEVKRVAEDTGFEVTVFE--PTPKTSLRQAYALI--NSSHAMVGVHGAALTHSL 275 (385)
Q Consensus 204 ~~~prv~~isR~~~--~~R~i~Ne~ev~~~l~~~gf~v~~~~--~~~~~s~~eq~~l~--~~advlVGvHGAgLtn~l 275 (385)
.++||+.+|+=.+. .++.=.|-.-+.+.|++.|++++... +++.-.+.+.++.. ..+|++|-.=|.|.+--=
T Consensus 28 ~~~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVIttGGts~g~~D 105 (185)
T 3rfq_A 28 LVVGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGTGVTPRD 105 (185)
T ss_dssp -CCEEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESCCSSSTTC
T ss_pred CCCCEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCcc
Confidence 47889888875442 12244577788899999999875322 33334566776554 579999999999876543
No 102
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=22.50 E-value=1.1e+02 Score=24.72 Aligned_cols=54 Identities=9% Similarity=0.059 Sum_probs=35.4
Q ss_pred CCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHh--cCCEE
Q 043548 206 RPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALIN--SSHAM 263 (385)
Q Consensus 206 ~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~--~advl 263 (385)
+|++++..=.+- -.-+...=+...++..||+|+.+.. ..|.++.++... ++|++
T Consensus 3 ~~~vvla~~~~d--~HdiG~~~v~~~l~~~G~~Vi~lG~--~~p~e~~v~~a~~~~~d~v 58 (137)
T 1ccw_A 3 KKTIVLGVIGSD--CHAVGNKILDHAFTNAGFNVVNIGV--LSPQELFIKAAIETKADAI 58 (137)
T ss_dssp CCEEEEEEETTC--CCCHHHHHHHHHHHHTTCEEEEEEE--EECHHHHHHHHHHHTCSEE
T ss_pred CCEEEEEeCCCc--hhHHHHHHHHHHHHHCCCEEEECCC--CCCHHHHHHHHHhcCCCEE
Confidence 466655543332 3344445566788899999997754 588888887775 45554
No 103
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=22.44 E-value=97 Score=26.48 Aligned_cols=69 Identities=9% Similarity=0.055 Sum_probs=43.0
Q ss_pred CCCeEEEEEccCC---CCcccccHHHHHHHHH---HCCCEEEE-ecCCCCCCHHHHHHHHh---cCCEEEeechhhhhh
Q 043548 205 TRPRLMLMSRRGG---LGRVILNQVEVKRVAE---DTGFEVTV-FEPTPKTSLRQAYALIN---SSHAMVGVHGAALTH 273 (385)
Q Consensus 205 ~~prv~~isR~~~---~~R~i~Ne~ev~~~l~---~~gf~v~~-~~~~~~~s~~eq~~l~~---~advlVGvHGAgLtn 273 (385)
++||+-+|+=.+. ....=.|-.-+.+.++ +.|+++.. +-+++.-.+.+.++... .+|++|-.=|.|.+.
T Consensus 4 ~~~rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G~~v~~~iv~Dd~~~I~~~l~~~~~~~~~DlVittGG~g~g~ 82 (178)
T 2pbq_A 4 KKAVIGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFEVEYRVIPDERDLIEKTLIELADEKGCSLILTTGGTGPAP 82 (178)
T ss_dssp -CCEEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSCCEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSST
T ss_pred CCCEEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCC
Confidence 5678877773321 0123345567778888 78998721 11333345667776554 699999999988664
No 104
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=22.09 E-value=1.1e+02 Score=28.74 Aligned_cols=30 Identities=10% Similarity=0.169 Sum_probs=21.0
Q ss_pred cHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHH
Q 043548 224 NQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYAL 256 (385)
Q Consensus 224 Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l 256 (385)
..+.|.+.++++||+|.+.+ +++..|-.+.
T Consensus 83 Da~~L~~~f~~LGF~V~~~~---dlt~~em~~~ 112 (302)
T 3e4c_A 83 DITGMTMLLQNLGYSVDVKK---NLTASDMTTE 112 (302)
T ss_dssp HHHHHHHHHHHTTCEEEEEE---SCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEee---CCCHHHHHHH
Confidence 35677788999999999876 4554444333
No 105
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=21.89 E-value=2.8e+02 Score=22.49 Aligned_cols=36 Identities=6% Similarity=-0.188 Sum_probs=25.0
Q ss_pred CCCCeEEEEEccCCCCcccccHHHHHHHHHHC-CCEEEEec
Q 043548 204 STRPRLMLMSRRGGLGRVILNQVEVKRVAEDT-GFEVTVFE 243 (385)
Q Consensus 204 ~~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~-gf~v~~~~ 243 (385)
..++.++++.|-.. .-|.+.+++++++. +++++++.
T Consensus 21 ~~~~~i~~~G~~~~----~Kg~~~li~a~~~l~~~~l~i~G 57 (177)
T 2f9f_A 21 CYGDFWLSVNRIYP----EKRIELQLEVFKKLQDEKLYIVG 57 (177)
T ss_dssp CCCSCEEEECCSSG----GGTHHHHHHHHHHCTTSCEEEEB
T ss_pred CCCCEEEEEecccc----ccCHHHHHHHHHhCCCcEEEEEe
Confidence 35678888887543 34778888888886 66665554
No 106
>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*
Probab=21.72 E-value=2e+02 Score=25.58 Aligned_cols=92 Identities=22% Similarity=0.264 Sum_probs=56.8
Q ss_pred eEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCC--CCHHHH--------HHHHhcCCEEEeechhhhh----h
Q 043548 208 RLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPK--TSLRQA--------YALINSSHAMVGVHGAALT----H 273 (385)
Q Consensus 208 rv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~--~s~~eq--------~~l~~~advlVGvHGAgLt----n 273 (385)
++++|...+- + ..++..|.+.|.+|.+.+.... ..+.++ -++ ..+|++|..-++++. .
T Consensus 118 ~v~iiG~G~~-g------~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~~~~~~~~-~~~Divi~~tp~~~~~~~~~ 189 (263)
T 2d5c_A 118 PALVLGAGGA-G------RAVAFALREAGLEVWVWNRTPQRALALAEEFGLRAVPLEKA-REARLLVNATRVGLEDPSAS 189 (263)
T ss_dssp CEEEECCSHH-H------HHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCEECCGGGG-GGCSEEEECSSTTTTCTTCC
T ss_pred eEEEECCcHH-H------HHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccchhhHhhc-cCCCEEEEccCCCCCCCCCC
Confidence 7888886442 1 3456677778888877753210 011111 123 689999999888863 1
Q ss_pred ---hhccCCCcEEEEEeeCCccccccccHHHHHhhcCCcEE
Q 043548 274 ---SLFLRPGSVFVQVVPLGLEWVAEVCFGTSAKAMGLDYM 311 (385)
Q Consensus 274 ---~lFl~pgs~viEi~P~g~~~~~~~~y~~~A~~~gl~Y~ 311 (385)
.-++++|+.|+++. ++ . ....+...|+..|.++.
T Consensus 190 ~l~~~~l~~g~~viD~~-~~--p-~~t~l~~~a~~~g~~~v 226 (263)
T 2d5c_A 190 PLPAELFPEEGAAVDLV-YR--P-LWTRFLREAKAKGLKVQ 226 (263)
T ss_dssp SSCGGGSCSSSEEEESC-CS--S-SSCHHHHHHHHTTCEEE
T ss_pred CCCHHHcCCCCEEEEee-cC--C-cccHHHHHHHHCcCEEE
Confidence 23578999999864 22 1 12236677778888766
No 107
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=21.05 E-value=1.2e+02 Score=29.67 Aligned_cols=81 Identities=19% Similarity=0.199 Sum_probs=48.4
Q ss_pred HHHHhCCCCcCCCCCCCCCCCeEEEEEccCCC--------Cccc--ccHHHHHHHHHHCCCEEEEec--CCCCCCHHHHH
Q 043548 187 LDEAYSHGRIRNRNNSPSTRPRLMLMSRRGGL--------GRVI--LNQVEVKRVAEDTGFEVTVFE--PTPKTSLRQAY 254 (385)
Q Consensus 187 l~~~~~l~~~~~~~~~~~~~prv~~isR~~~~--------~R~i--~Ne~ev~~~l~~~gf~v~~~~--~~~~~s~~eq~ 254 (385)
+..+.++.... --++||+.+|+=.+.- .-+| .|-.-+.+.+++.|++++... +++.-.+.+.+
T Consensus 166 llas~G~~~V~-----V~~~prv~IistGdEl~~~g~~~~~G~i~DsN~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l 240 (402)
T 1uz5_A 166 LLSAVGINKVK-----VFRKPKVAVISTGNEIVPPGNELKPGQIYDINGRALCDAINELGGEGIFMGVARDDKESLKALI 240 (402)
T ss_dssp HHHHTTCCEEE-----EECCCEEEEEEECTTEECTTSCCCTTCEECCHHHHHHHHHHHHTSEEEEEEEECSSHHHHHHHH
T ss_pred HHHhCCCceee-----ecCCCEEEEEEcCccccCCCCCCCCCcEEcchHHHHHHHHHhCCCeEEEEEEeCCCHHHHHHHH
Confidence 44555664331 1367899888844320 1123 466778899999999876432 32233455555
Q ss_pred H-HHhcCCEEEeechhhhh
Q 043548 255 A-LINSSHAMVGVHGAALT 272 (385)
Q Consensus 255 ~-l~~~advlVGvHGAgLt 272 (385)
+ ...++|++|..=|.|.+
T Consensus 241 ~~a~~~~DlVittGG~s~g 259 (402)
T 1uz5_A 241 EKAVNVGDVVVISGGASGG 259 (402)
T ss_dssp HHHHHHCSEEEEECCC---
T ss_pred HHHhhCCCEEEEcCCCCCC
Confidence 4 34579999999888755
No 108
>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}
Probab=20.61 E-value=1e+02 Score=29.91 Aligned_cols=95 Identities=14% Similarity=0.209 Sum_probs=56.5
Q ss_pred CCCCeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhcCCEEEeechhhhhhhhccCCCcEE
Q 043548 204 STRPRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINSSHAMVGVHGAALTHSLFLRPGSVF 283 (385)
Q Consensus 204 ~~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~advlVGvHGAgLtn~lFl~pgs~v 283 (385)
..+|+++|+.-..- -..|+++++.+||+|+++++.+.. .. -..|-.++-++...-...-..+-+++++.+
T Consensus 197 ~p~~~L~I~GaGhv-------a~aLa~la~~lgf~V~v~D~R~~~--~~-~~~fp~a~~v~~~~p~~~~~~~~~~~~t~v 266 (362)
T 3on5_A 197 SPKERLIIFGAGPD-------VPPLVTFASNVGFYTVVTDWRPNQ--CE-KHFFPDADEIIVDFPADFLRKFLIRPDDFV 266 (362)
T ss_dssp CCCEEEEEECCSTT-------HHHHHHHHHHHTEEEEEEESCGGG--GC-GGGCTTCSEEEESCHHHHHHHSCCCTTCEE
T ss_pred CCCCEEEEECCCHH-------HHHHHHHHHHCCCeEEEECCCccc--cc-cccCCCceEEecCCHHHHHhhcCCCCCeEE
Confidence 35789999888776 578889999999999999875321 10 112456774444322333333456777777
Q ss_pred EEEeeCCccccccccHHHHHhhc--CCcEEEE
Q 043548 284 VQVVPLGLEWVAEVCFGTSAKAM--GLDYMEY 313 (385)
Q Consensus 284 iEi~P~g~~~~~~~~y~~~A~~~--gl~Y~~y 313 (385)
+ |+-.+ ...++.-+..++ +..|+.-
T Consensus 267 v-v~TH~----h~~D~~~L~~aL~~~~~YiG~ 293 (362)
T 3on5_A 267 L-IMTHH----FQKDQEILHFLLEKELRYIGI 293 (362)
T ss_dssp E-ECCSC----HHHHHHHHHHHSSSCCSEEEE
T ss_pred E-EEeCC----chhhHHHHHHHhcCCCCEEEE
Confidence 6 44333 123344444433 5667753
No 109
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=20.54 E-value=1.2e+02 Score=28.04 Aligned_cols=72 Identities=10% Similarity=0.158 Sum_probs=46.8
Q ss_pred CCCeEEEEEccCCCC-cccccHHHHHHHHHHCCCEEEEecCCCCCCHHHHHHHHhc-CCEEEeechhh---hhhhhc
Q 043548 205 TRPRLMLMSRRGGLG-RVILNQVEVKRVAEDTGFEVTVFEPTPKTSLRQAYALINS-SHAMVGVHGAA---LTHSLF 276 (385)
Q Consensus 205 ~~prv~~isR~~~~~-R~i~Ne~ev~~~l~~~gf~v~~~~~~~~~s~~eq~~l~~~-advlVGvHGAg---Ltn~lF 276 (385)
..|.+++++..+-.. +.+...+++.+.+++.|++++.+.......+.+-...... .-+++|.-||| |.|++-
T Consensus 110 ~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 110 KVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhccCcEEEEECCCCCCHHHHHHHHH
Confidence 456677776555311 1111134555666778999887765556678888777754 56899999998 666663
No 110
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}
Probab=20.33 E-value=4.6e+02 Score=25.21 Aligned_cols=144 Identities=15% Similarity=0.093 Sum_probs=75.9
Q ss_pred CeEEEEEccCCCCcccccHHHHHHHHHHCCCEEEEecCCC-----CCCHHHHHHHHhcCCEEEeec--hh-------hhh
Q 043548 207 PRLMLMSRRGGLGRVILNQVEVKRVAEDTGFEVTVFEPTP-----KTSLRQAYALINSSHAMVGVH--GA-------ALT 272 (385)
Q Consensus 207 prv~~isR~~~~~R~i~Ne~ev~~~l~~~gf~v~~~~~~~-----~~s~~eq~~l~~~advlVGvH--GA-------gLt 272 (385)
-++.||.=..- =..+++.|+.+|++|...++.. ...+.+--+++..|||++-.= .. +|-
T Consensus 117 ~tvGIIGlG~I-------G~~vA~~l~~~G~~V~~~d~~~~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li 189 (380)
T 2o4c_A 117 RTYGVVGAGQV-------GGRLVEVLRGLGWKVLVCDPPRQAREPDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLL 189 (380)
T ss_dssp CEEEEECCSHH-------HHHHHHHHHHTTCEEEEECHHHHHHSTTSCCCCHHHHHHHCSEEEECCCCCSSSSSCCTTSB
T ss_pred CEEEEEeCCHH-------HHHHHHHHHHCCCEEEEEcCChhhhccCcccCCHHHHHHhCCEEEEeccCccccccchhhhc
Confidence 36777752221 1457788899999998876321 111122235677999987632 11 122
Q ss_pred ---hhhccCCCcEEEEEeeCCccccccccHHHHHhhc---CCcEEEEEecccccchhh-hcCCCCccccCCccccCCCcc
Q 043548 273 ---HSLFLRPGSVFVQVVPLGLEWVAEVCFGTSAKAM---GLDYMEYKINAEESSLIE-KYNKNDTVIKDPVAFRGKSWS 345 (385)
Q Consensus 273 ---n~lFl~pgs~viEi~P~g~~~~~~~~y~~~A~~~---gl~Y~~y~~~~~essl~~-~y~~d~~v~~dP~~~~~~gw~ 345 (385)
.+--|+||+.+|-+-- | .-..-..+++.+ ++.+....+-..|-...+ .+ ++.++-.| |-.|+.
T Consensus 190 ~~~~l~~mk~gailIN~sR-G----~vvd~~aL~~aL~~g~i~~A~LDV~~~EP~~~~~l~--~~nvi~TP---Hiag~t 259 (380)
T 2o4c_A 190 DEPRLAALRPGTWLVNASR-G----AVVDNQALRRLLEGGADLEVALDVWEGEPQADPELA--ARCLIATP---HIAGYS 259 (380)
T ss_dssp CHHHHHTSCTTEEEEECSC-G----GGBCHHHHHHHHHTTCCEEEEESCCTTTTSCCHHHH--TTCSEECS---SCTTCC
T ss_pred CHHHHhhCCCCcEEEECCC-C----cccCHHHHHHHHHhCCCceEEeeeeccCCCCchhhc--cCCEEEcc---ccCcCC
Confidence 1234799999987642 2 112334454433 456666666555541111 11 12234445 544441
Q ss_pred hhhhhhhhcCCceEEchHhHHHHHHHHHHHHHhhhhcC
Q 043548 346 DAAMNIYLKEQNVKLDLFRFREYLKKVYKKAKRFMDKG 383 (385)
Q Consensus 346 ~~~~~~yl~~Qdv~ldi~rF~~~L~~a~~~~~~~~~~~ 383 (385)
.+........+++.+.+|+..+
T Consensus 260 ----------------~e~~~~~~~~~~~nl~~~l~g~ 281 (380)
T 2o4c_A 260 ----------------LEGKLRGTAQIYQAYCAWRGIA 281 (380)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHTCC
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHcCC
Confidence 2344566667777777776543
No 111
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=20.26 E-value=43 Score=30.49 Aligned_cols=63 Identities=6% Similarity=0.124 Sum_probs=37.7
Q ss_pred CCCeEEEEEcc---------CCC----CcccccHHHHHHHHHHCCCEEEEecCCC-CCCHHHHHHHHhcCCEEEeec
Q 043548 205 TRPRLMLMSRR---------GGL----GRVILNQVEVKRVAEDTGFEVTVFEPTP-KTSLRQAYALINSSHAMVGVH 267 (385)
Q Consensus 205 ~~prv~~isR~---------~~~----~R~i~Ne~ev~~~l~~~gf~v~~~~~~~-~~s~~eq~~l~~~advlVGvH 267 (385)
.+-||+++.|. +.. +.--.....+.++|++.|++|..+...+ ..+|....+.++..|+||=..
T Consensus 9 ~~~~vll~~~sw~~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~~~~~v~~~~~~~~~~~fp~~~~~L~~yDvIIl~~ 85 (256)
T 2gk3_A 9 KKLKVLFIGESWHIHMIHSKGYDSFTSSKYEEGATWLLECLRKGGVDIDYMPAHTVQIAFPESIDELNRYDVIVISD 85 (256)
T ss_dssp --CEEEEEECEEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHTTCEEEEECHHHHHHCCCCSHHHHHTCSEEEEES
T ss_pred hhcEEEEecCccceeeEeecccccccccCccccHHHHHHHHHhcCceEEEEecccchhhCCcChhHHhcCCEEEEeC
Confidence 34599999887 110 0122245678889999999998873100 002222245789999999554
No 112
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*
Probab=20.14 E-value=1.8e+02 Score=26.70 Aligned_cols=48 Identities=15% Similarity=0.270 Sum_probs=33.7
Q ss_pred cCCEEEeechhhhhh------h-h--ccCCCcEEEEEeeCCccccccccHHHHHhhcCCcEE
Q 043548 259 SSHAMVGVHGAALTH------S-L--FLRPGSVFVQVVPLGLEWVAEVCFGTSAKAMGLDYM 311 (385)
Q Consensus 259 ~advlVGvHGAgLtn------~-l--Fl~pgs~viEi~P~g~~~~~~~~y~~~A~~~gl~Y~ 311 (385)
.+|++|..-.+|+.. - + .++++++|++++- .+ .+.|...|+..|.+..
T Consensus 172 ~~DiVInaTp~Gm~~~~~l~~~~l~~~l~~~~~v~D~vY---~P--~T~ll~~A~~~G~~~~ 228 (269)
T 3phh_A 172 AFDLIINATSASLHNELPLNKEVLKGYFKEGKLAYDLAY---GF--LTPFLSLAKELKTPFQ 228 (269)
T ss_dssp CCSEEEECCTTCCCCSCSSCHHHHHHHHHHCSEEEESCC---SS--CCHHHHHHHHTTCCEE
T ss_pred cCCEEEEcccCCCCCCCCCChHHHHhhCCCCCEEEEeCC---CC--chHHHHHHHHCcCEEE
Confidence 799999777766532 0 1 4678899999862 22 4568888999998754
No 113
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=20.05 E-value=2.6e+02 Score=27.98 Aligned_cols=50 Identities=6% Similarity=0.083 Sum_probs=34.7
Q ss_pred HHHHHHHhCCCCcCCCCCCCCCCCeEEEEEccCCCCcccccHHHHHHHHHHC---CCEEEEecC
Q 043548 184 RGLLDEAYSHGRIRNRNNSPSTRPRLMLMSRRGGLGRVILNQVEVKRVAEDT---GFEVTVFEP 244 (385)
Q Consensus 184 ~~fl~~~~~l~~~~~~~~~~~~~prv~~isR~~~~~R~i~Ne~ev~~~l~~~---gf~v~~~~~ 244 (385)
+..+++.++++. ....|.+++++|-.. + -|.+.++++++++ +.+++++-.
T Consensus 312 k~~l~~~~gl~~-------d~~~p~i~~vgRl~~--~--Kg~~~li~a~~~l~~~~~~l~l~G~ 364 (536)
T 3vue_A 312 KEALQAEAGLPV-------DRKIPLIAFIGRLEE--Q--KGPDVMAAAIPELMQEDVQIVLLGT 364 (536)
T ss_dssp HHHHHHHTTSCC-------CTTSCEEEEECCBSG--G--GCHHHHHHHHHHHTTSSCEEEEECC
T ss_pred HHHHHHhcCCCC-------CCCCcEEEEEeeccc--c--CChHHHHHHHHHhHhhCCeEEEEec
Confidence 456777788742 247899999999654 3 4678888887764 677766543
Done!