BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043549
(162 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|356559155|ref|XP_003547866.1| PREDICTED: phototropin-2-like [Glycine max]
Length = 990
Score = 226 bits (576), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 114/148 (77%), Positives = 124/148 (83%), Gaps = 5/148 (3%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ + KE+IG C RFLQGPETDKNEV KIRDA RNG+SYCGRLLNYKKDGTPFWN
Sbjct: 217 MTGYSSKEIIGRNC----RFLQGPETDKNEVAKIRDATRNGRSYCGRLLNYKKDGTPFWN 272
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT+TPIKDD G TIKFIGMQVEVSKYTEGVN+KALRPNGL KSLIRYDARQKEKALGSI
Sbjct: 273 LLTITPIKDDHGNTIKFIGMQVEVSKYTEGVNEKALRPNGLPKSLIRYDARQKEKALGSI 332
Query: 120 TEVIQTVKRSQSHIRALSLDTTNKLEEK 147
TEV+QTVK +S I + DT K EE+
Sbjct: 333 TEVVQTVKDPKSIINDRNGDTAAKPEEQ 360
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V +IRDA+R + +L+NY K G FWNL + P++D G+ FI
Sbjct: 505 RFLQGPETDQATVSRIRDAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFI 564
Query: 78 GMQVEVSKYTEGVNDK 93
G+Q++ S + E + ++
Sbjct: 565 GVQLDGSDHVEPLKNR 580
>gi|255546656|ref|XP_002514387.1| serine/threonine protein kinase, putative [Ricinus communis]
gi|223546484|gb|EEF47983.1| serine/threonine protein kinase, putative [Ricinus communis]
Length = 984
Score = 225 bits (574), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 110/146 (75%), Positives = 126/146 (86%), Gaps = 5/146 (3%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ + KE+IG C RFLQGPETD+ EVEKIRDAV++G+SYCGRLLNYKKDGTPFWN
Sbjct: 212 MTGYSSKEVIGRNC----RFLQGPETDEKEVEKIRDAVKSGQSYCGRLLNYKKDGTPFWN 267
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLTVTPIKDD G TIKFIGMQVEVSKYTEG+N+KALRPNGL KSLIRYDARQK+KAL SI
Sbjct: 268 LLTVTPIKDDRGNTIKFIGMQVEVSKYTEGINEKALRPNGLPKSLIRYDARQKDKALDSI 327
Query: 120 TEVIQTVKRSQSHIRALSLDTTNKLE 145
TEV+QTVK +SHIR ++ D +N L+
Sbjct: 328 TEVVQTVKDPKSHIRTMNHDISNNLD 353
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 49/76 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD V KIRDA+R + +L+NY K G FWNL + P++D G+ FI
Sbjct: 498 RFLQGPETDLATVSKIRDAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFI 557
Query: 78 GMQVEVSKYTEGVNDK 93
G+Q++ S + E + ++
Sbjct: 558 GVQLDGSDHVEPLRNR 573
>gi|60099458|dbj|BAD89968.1| phototropin [Phaseolus vulgaris]
Length = 996
Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 111/148 (75%), Positives = 126/148 (85%), Gaps = 5/148 (3%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ + KE+IG C RFLQGP+TDKNEV+KIRDA+RNG+SYCGRLLNYKK+GTPFWN
Sbjct: 220 MTGYSSKEIIGRNC----RFLQGPDTDKNEVDKIRDAIRNGRSYCGRLLNYKKNGTPFWN 275
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLTVTPIKDD G TIKFIGMQVEVSKYTEGVN+KALRPNGL KSLIRYDARQKE A+GSI
Sbjct: 276 LLTVTPIKDDKGNTIKFIGMQVEVSKYTEGVNEKALRPNGLPKSLIRYDARQKETAMGSI 335
Query: 120 TEVIQTVKRSQSHIRALSLDTTNKLEEK 147
TEV+QTVK +S I + DT +K EE+
Sbjct: 336 TEVVQTVKDPKSIINKRNDDTASKQEEE 363
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V +IRDA+R + +L+NY K G FWNL + P++D G+ FI
Sbjct: 511 RFLQGPETDQATVSRIRDAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFI 570
Query: 78 GMQVEVSKYTEGVNDK 93
G+Q++ S + E + ++
Sbjct: 571 GVQLDGSDHVEPLKNR 586
>gi|356526675|ref|XP_003531942.1| PREDICTED: phototropin-2-like [Glycine max]
Length = 996
Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 113/148 (76%), Positives = 123/148 (83%), Gaps = 5/148 (3%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ + KE+IG C RFLQGPETDKNEV KIRDA RNG+SYCGRLLNYKKDGTPFWN
Sbjct: 222 MTGYSSKEIIGRNC----RFLQGPETDKNEVAKIRDATRNGRSYCGRLLNYKKDGTPFWN 277
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLTVTPIKDD G TIKFIGMQVEVSKYTEG+N+KALRPNGL KSLIRYDARQKEKALGSI
Sbjct: 278 LLTVTPIKDDHGNTIKFIGMQVEVSKYTEGMNEKALRPNGLPKSLIRYDARQKEKALGSI 337
Query: 120 TEVIQTVKRSQSHIRALSLDTTNKLEEK 147
TEV+QTVK +S I + DT EE+
Sbjct: 338 TEVVQTVKDPKSIINDRNGDTATMPEEQ 365
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V +IRDA+R + +L+NY K G FWNL + P++D G+ FI
Sbjct: 511 RFLQGPETDQATVSRIRDAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFI 570
Query: 78 GMQVEVSKYTEGVNDK 93
G+Q++ S + E + ++
Sbjct: 571 GVQLDGSDHVEPLKNR 586
>gi|449475890|ref|XP_004154580.1| PREDICTED: phototropin-2-like [Cucumis sativus]
Length = 629
Score = 221 bits (564), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 111/147 (75%), Positives = 125/147 (85%), Gaps = 5/147 (3%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ +E+IG C RFLQG ETD+ EV+KIR AV+NGKSYCGRLLNYKK+GTPFWN
Sbjct: 150 MTGYASEEVIGRNC----RFLQGSETDQKEVDKIRYAVKNGKSYCGRLLNYKKNGTPFWN 205
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLTVTPIKDD+G TIKFIGMQVEVSKYTEG+NDKALRPNGL KSLIRYDARQKEKA+ SI
Sbjct: 206 LLTVTPIKDDNGNTIKFIGMQVEVSKYTEGINDKALRPNGLPKSLIRYDARQKEKAMVSI 265
Query: 120 TEVIQTVKRSQSHIRALSLDTTNKLEE 146
TEV+QTVK +SH RA+S DTT K E+
Sbjct: 266 TEVVQTVKNPRSHGRAMSHDTTRKKED 292
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 52/76 (68%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V KIRDA+R + +L+NY K G FWNL + P++D++G+ FI
Sbjct: 436 RFLQGPETDQETVSKIRDAIREQREITVQLINYTKTGKKFWNLFHLQPMRDETGELQYFI 495
Query: 78 GMQVEVSKYTEGVNDK 93
G+Q++ S + E + ++
Sbjct: 496 GVQLDGSGHVEPLQNR 511
>gi|449444602|ref|XP_004140063.1| PREDICTED: phototropin-2-like [Cucumis sativus]
Length = 921
Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 106/129 (82%), Positives = 117/129 (90%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ETD+ EV+KIR AV+NGKSYCGRLLNYKK+GTPFWNLLTVTPIKDD+G TIKFI
Sbjct: 164 RFLQGSETDQKEVDKIRYAVKNGKSYCGRLLNYKKNGTPFWNLLTVTPIKDDNGNTIKFI 223
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRSQSHIRALS 137
GMQVEVSKYTEG+NDKALRPNGL KSLIRYDARQKEKA+ SITEV+QTVK +SH RA+S
Sbjct: 224 GMQVEVSKYTEGINDKALRPNGLPKSLIRYDARQKEKAMVSITEVVQTVKNPRSHGRAMS 283
Query: 138 LDTTNKLEE 146
DTT K E+
Sbjct: 284 HDTTRKKED 292
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 52/76 (68%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V KIRDA+R + +L+NY K G FWNL + P++D++G+ FI
Sbjct: 436 RFLQGPETDQETVSKIRDAIREQREITVQLINYTKTGKKFWNLFHLQPMRDETGELQYFI 495
Query: 78 GMQVEVSKYTEGVNDK 93
G+Q++ S + E + ++
Sbjct: 496 GVQLDGSGHVEPLQNR 511
>gi|20260484|gb|AAM13140.1| unknown protein [Arabidopsis thaliana]
gi|31711968|gb|AAP68340.1| At5g58140 [Arabidopsis thaliana]
Length = 549
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 109/142 (76%), Positives = 123/142 (86%), Gaps = 6/142 (4%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ + KE++G C RFLQGP+TDKNEV KIRD V+NGKSYCGRLLNYKKDGTPFWN
Sbjct: 157 MTGYSSKEIVGRNC----RFLQGPDTDKNEVAKIRDCVKNGKSYCGRLLNYKKDGTPFWN 212
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLTVTPIKDD G TIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKAL SI
Sbjct: 213 LLTVTPIKDDQGNTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALDSI 272
Query: 120 TEVIQTVKRSQSHIR-ALSLDT 140
TEV+QT++ +S ++ ++S DT
Sbjct: 273 TEVVQTIRHRKSQVQESVSNDT 294
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 63/100 (63%), Gaps = 1/100 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V+KIRDA+R+ + +L+NY K G FWNL + P++D G+ FI
Sbjct: 427 RFLQGPETDQATVQKIRDAIRDQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFI 486
Query: 78 GMQVEVSKYTEGVNDK-ALRPNGLSKSLIRYDARQKEKAL 116
G+Q++ S + E + ++ + R S L++ A ++A+
Sbjct: 487 GVQLDGSDHVEPLQNRLSERTEMQSSKLVKATATNVDEAV 526
>gi|113911589|gb|ABI48276.1| phototropin-2 [Solanum lycopersicum]
Length = 952
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 111/156 (71%), Positives = 132/156 (84%), Gaps = 6/156 (3%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ + KE++G C RFLQG +TD+NEV KIRDAV+ GKSYCGRLLNYKK+GTPFWN
Sbjct: 181 MTGYSSKEIVGRNC----RFLQGKDTDQNEVAKIRDAVKTGKSYCGRLLNYKKNGTPFWN 236
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVN+K LRPNGL KSLIRYDARQKEKALGSI
Sbjct: 237 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNEKELRPNGLPKSLIRYDARQKEKALGSI 296
Query: 120 TEVIQTVKRSQSHIRALSLDTTNKLEEKRSSILIVL 155
TEV+QTVK +SHI++ S D ++ ++++S + +L
Sbjct: 297 TEVVQTVKGPRSHIKS-SQDASSGTDKEKSQVDFML 331
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 51/76 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V+KIRDA++ K +L+NY K G FWNL + P++D G+ FI
Sbjct: 470 RFLQGPETDQATVQKIRDAIKEQKEITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFI 529
Query: 78 GMQVEVSKYTEGVNDK 93
G+Q++ S + E + ++
Sbjct: 530 GVQLDGSDHVEPLRNR 545
>gi|357517333|ref|XP_003628955.1| Phototropin [Medicago truncatula]
gi|355522977|gb|AET03431.1| Phototropin [Medicago truncatula]
Length = 941
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 109/148 (73%), Positives = 125/148 (84%), Gaps = 5/148 (3%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ + KE+IG C RFLQGPETD+NEV KIRDA +NGKSYCGRLLNYKK+GTPFWN
Sbjct: 151 MTGYSSKEVIGRNC----RFLQGPETDQNEVAKIRDATKNGKSYCGRLLNYKKNGTPFWN 206
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLTVTPIKDD G TIKFIGMQVEVSKYTEGVN+KALRPNGL KSLIRYDARQKE+A+GSI
Sbjct: 207 LLTVTPIKDDRGNTIKFIGMQVEVSKYTEGVNEKALRPNGLPKSLIRYDARQKEEAMGSI 266
Query: 120 TEVIQTVKRSQSHIRALSLDTTNKLEEK 147
TEV+QTV+ +S IR+ + DT + E+
Sbjct: 267 TEVVQTVRNPKSIIRSKNDDTATIMHEE 294
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 51/76 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V +IRDA+++ + +L+NY K G FWNL + P++D G+ FI
Sbjct: 449 RFLQGPETDQATVNRIRDAIKDQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFI 508
Query: 78 GMQVEVSKYTEGVNDK 93
G+Q++ S + E + ++
Sbjct: 509 GVQLDGSDHLEPLRNR 524
>gi|30697015|ref|NP_568874.2| phototropin 2 [Arabidopsis thaliana]
gi|332009618|gb|AED97001.1| phototropin 2 [Arabidopsis thaliana]
Length = 689
Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 109/142 (76%), Positives = 123/142 (86%), Gaps = 6/142 (4%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ + KE++G C RFLQGP+TDKNEV KIRD V+NGKSYCGRLLNYKKDGTPFWN
Sbjct: 157 MTGYSSKEIVGRNC----RFLQGPDTDKNEVAKIRDCVKNGKSYCGRLLNYKKDGTPFWN 212
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLTVTPIKDD G TIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKAL SI
Sbjct: 213 LLTVTPIKDDQGNTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALDSI 272
Query: 120 TEVIQTVKRSQSHIR-ALSLDT 140
TEV+QT++ +S ++ ++S DT
Sbjct: 273 TEVVQTIRHRKSQVQESVSNDT 294
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 63/100 (63%), Gaps = 1/100 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V+KIRDA+R+ + +L+NY K G FWNL + P++D G+ FI
Sbjct: 427 RFLQGPETDQATVQKIRDAIRDQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFI 486
Query: 78 GMQVEVSKYTEGVNDK-ALRPNGLSKSLIRYDARQKEKAL 116
G+Q++ S + E + ++ + R S L++ A ++A+
Sbjct: 487 GVQLDGSDHVEPLQNRLSERTEMQSSKLVKATATNVDEAV 526
>gi|350537331|ref|NP_001234289.1| phototropin-2 [Solanum lycopersicum]
gi|154000865|gb|ABS57001.1| phototropin-2 [Solanum lycopersicum]
Length = 952
Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 111/156 (71%), Positives = 132/156 (84%), Gaps = 6/156 (3%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ + KE++G C RFLQG +TD+NEV KIRDAV+ GKSYCGRLLNYKK+GTPFWN
Sbjct: 181 MTGYSSKEIVGRNC----RFLQGKDTDQNEVAKIRDAVKTGKSYCGRLLNYKKNGTPFWN 236
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVN+K LRPNGL KSLIRYDARQKEKALGSI
Sbjct: 237 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNEKELRPNGLPKSLIRYDARQKEKALGSI 296
Query: 120 TEVIQTVKRSQSHIRALSLDTTNKLEEKRSSILIVL 155
TEV+QTVK +SHI++ S D ++ ++++S + +L
Sbjct: 297 TEVVQTVKGPRSHIKS-SQDASSGTDKEKSQVDFML 331
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 51/76 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V+KIRDA++ K +L+NY K G FWNL + P++D G+ FI
Sbjct: 470 RFLQGPETDQATVQKIRDAIKEQKEITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFI 529
Query: 78 GMQVEVSKYTEGVNDK 93
G+Q++ S + E + ++
Sbjct: 530 GVQLDGSDHVEPLRNR 545
>gi|145362057|ref|NP_851212.2| phototropin 2 [Arabidopsis thaliana]
gi|332009620|gb|AED97003.1| phototropin 2 [Arabidopsis thaliana]
Length = 898
Score = 219 bits (558), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 109/142 (76%), Positives = 123/142 (86%), Gaps = 6/142 (4%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ + KE++G C RFLQGP+TDKNEV KIRD V+NGKSYCGRLLNYKKDGTPFWN
Sbjct: 157 MTGYSSKEIVGRNC----RFLQGPDTDKNEVAKIRDCVKNGKSYCGRLLNYKKDGTPFWN 212
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLTVTPIKDD G TIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKAL SI
Sbjct: 213 LLTVTPIKDDQGNTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALDSI 272
Query: 120 TEVIQTVKRSQSHIR-ALSLDT 140
TEV+QT++ +S ++ ++S DT
Sbjct: 273 TEVVQTIRHRKSQVQESVSNDT 294
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 63/100 (63%), Gaps = 1/100 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V+KIRDA+R+ + +L+NY K G FWNL + P++D G+ FI
Sbjct: 427 RFLQGPETDQATVQKIRDAIRDQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFI 486
Query: 78 GMQVEVSKYTEGVNDK-ALRPNGLSKSLIRYDARQKEKAL 116
G+Q++ S + E + ++ + R S L++ A ++A+
Sbjct: 487 GVQLDGSDHVEPLQNRLSERTEMQSSKLVKATATNVDEAV 526
>gi|30697007|ref|NP_851210.1| phototropin 2 [Arabidopsis thaliana]
gi|30697010|ref|NP_851211.1| phototropin 2 [Arabidopsis thaliana]
gi|82593023|sp|P93025.2|PHOT2_ARATH RecName: Full=Phototropin-2; AltName: Full=Defective in chloroplast
avoidance protein 1; AltName: Full=Non-phototropic
hypocotyl 1-like protein 1; Short=AtKin7;
Short=NPH1-like protein 1
gi|5391442|gb|AAC27293.2| non phototropic hypocotyl 1-like [Arabidopsis thaliana]
gi|10176790|dbj|BAB09904.1| unnamed protein product [Arabidopsis thaliana]
gi|332009619|gb|AED97002.1| phototropin 2 [Arabidopsis thaliana]
gi|332009621|gb|AED97004.1| phototropin 2 [Arabidopsis thaliana]
Length = 915
Score = 219 bits (557), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 109/142 (76%), Positives = 123/142 (86%), Gaps = 6/142 (4%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ + KE++G C RFLQGP+TDKNEV KIRD V+NGKSYCGRLLNYKKDGTPFWN
Sbjct: 157 MTGYSSKEIVGRNC----RFLQGPDTDKNEVAKIRDCVKNGKSYCGRLLNYKKDGTPFWN 212
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLTVTPIKDD G TIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKAL SI
Sbjct: 213 LLTVTPIKDDQGNTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALDSI 272
Query: 120 TEVIQTVKRSQSHIR-ALSLDT 140
TEV+QT++ +S ++ ++S DT
Sbjct: 273 TEVVQTIRHRKSQVQESVSNDT 294
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 63/100 (63%), Gaps = 1/100 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V+KIRDA+R+ + +L+NY K G FWNL + P++D G+ FI
Sbjct: 427 RFLQGPETDQATVQKIRDAIRDQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFI 486
Query: 78 GMQVEVSKYTEGVNDK-ALRPNGLSKSLIRYDARQKEKAL 116
G+Q++ S + E + ++ + R S L++ A ++A+
Sbjct: 487 GVQLDGSDHVEPLQNRLSERTEMQSSKLVKATATNVDEAV 526
>gi|224132474|ref|XP_002328288.1| predicted protein [Populus trichocarpa]
gi|222837803|gb|EEE76168.1| predicted protein [Populus trichocarpa]
Length = 495
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 108/146 (73%), Positives = 121/146 (82%), Gaps = 5/146 (3%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ + KE+IG C RFLQG TD+NEV KIRDAV+NG SYCGRLLNYKK+GTPFWN
Sbjct: 102 MTGYSSKEVIGRNC----RFLQGAGTDQNEVAKIRDAVKNGTSYCGRLLNYKKNGTPFWN 157
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLTVTPIKDD G TIKFIGMQVEVSKYTEGVNDKALRPNGL KSLIRYDARQK KAL S+
Sbjct: 158 LLTVTPIKDDRGNTIKFIGMQVEVSKYTEGVNDKALRPNGLPKSLIRYDARQKAKALDSM 217
Query: 120 TEVIQTVKRSQSHIRALSLDTTNKLE 145
TEV+QTVK +SH R +S +T+ L+
Sbjct: 218 TEVVQTVKHPKSHSRTVSHETSGNLD 243
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V K+RDA+R + +L+NY K G FWNL + P++D G+ FI
Sbjct: 386 RFLQGPETDQATVSKVRDAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFI 445
Query: 78 GMQVEVSKYTEGVNDK 93
G+Q++ S + E + ++
Sbjct: 446 GVQLDGSDHVEPLQNR 461
>gi|225428366|ref|XP_002280118.1| PREDICTED: phototropin-2 [Vitis vinifera]
Length = 1001
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 109/149 (73%), Positives = 123/149 (82%), Gaps = 7/149 (4%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE+IG C RFLQGP+TD+NEV KIR++V+ G SYCGRLLNYKKDGTPFWN
Sbjct: 222 MTGYTSKEVIGRNC----RFLQGPDTDENEVAKIRNSVKTGNSYCGRLLNYKKDGTPFWN 277
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT+TPIKDD G IKFIGMQVEVSKYTEGVN+KA+RPNGL +SLIRYDARQKEKALGSI
Sbjct: 278 LLTITPIKDDKGNVIKFIGMQVEVSKYTEGVNEKAVRPNGLPQSLIRYDARQKEKALGSI 337
Query: 120 TEVIQTVK--RSQSHIRALSLDTTNKLEE 146
TEV+QTVK S +H R +S D T K EE
Sbjct: 338 TEVVQTVKHPHSHAHARTMSHDGTVKNEE 366
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 50/76 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V KIRDA+R + +L+NY K G FWNL + P++D G+ FI
Sbjct: 519 RFLQGPETDQGTVSKIRDAIRQQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFI 578
Query: 78 GMQVEVSKYTEGVNDK 93
G+Q++ S + E + ++
Sbjct: 579 GVQLDGSDHLEPLRNR 594
>gi|297744446|emb|CBI37708.3| unnamed protein product [Vitis vinifera]
Length = 979
Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 109/149 (73%), Positives = 123/149 (82%), Gaps = 7/149 (4%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE+IG C RFLQGP+TD+NEV KIR++V+ G SYCGRLLNYKKDGTPFWN
Sbjct: 200 MTGYTSKEVIGRNC----RFLQGPDTDENEVAKIRNSVKTGNSYCGRLLNYKKDGTPFWN 255
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT+TPIKDD G IKFIGMQVEVSKYTEGVN+KA+RPNGL +SLIRYDARQKEKALGSI
Sbjct: 256 LLTITPIKDDKGNVIKFIGMQVEVSKYTEGVNEKAVRPNGLPQSLIRYDARQKEKALGSI 315
Query: 120 TEVIQTVK--RSQSHIRALSLDTTNKLEE 146
TEV+QTVK S +H R +S D T K EE
Sbjct: 316 TEVVQTVKHPHSHAHARTMSHDGTVKNEE 344
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 50/76 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V KIRDA+R + +L+NY K G FWNL + P++D G+ FI
Sbjct: 497 RFLQGPETDQGTVSKIRDAIRQQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFI 556
Query: 78 GMQVEVSKYTEGVNDK 93
G+Q++ S + E + ++
Sbjct: 557 GVQLDGSDHLEPLRNR 572
>gi|297793331|ref|XP_002864550.1| hypothetical protein ARALYDRAFT_495918 [Arabidopsis lyrata subsp.
lyrata]
gi|297310385|gb|EFH40809.1| hypothetical protein ARALYDRAFT_495918 [Arabidopsis lyrata subsp.
lyrata]
Length = 915
Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 105/135 (77%), Positives = 117/135 (86%), Gaps = 5/135 (3%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ + KE++G C RFLQGP+TDKNEV KIRD V+NGKSYCGRLLNYKKDGTPFWN
Sbjct: 157 MTGYSSKEIVGRNC----RFLQGPDTDKNEVAKIRDCVKNGKSYCGRLLNYKKDGTPFWN 212
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLTVTPIKDD G TIKFIGMQVEVSKYTEGVNDK LRPNGLSKSLIRYDARQKEKAL SI
Sbjct: 213 LLTVTPIKDDQGNTIKFIGMQVEVSKYTEGVNDKVLRPNGLSKSLIRYDARQKEKALDSI 272
Query: 120 TEVIQTVKRSQSHIR 134
TEV+QT++ +S ++
Sbjct: 273 TEVVQTIRHRKSQVQ 287
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 51/76 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V+KIRDA+R+ +L+NY K G FWNL + P++D G+ FI
Sbjct: 425 RFLQGPETDQATVQKIRDAIRDQTEITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFI 484
Query: 78 GMQVEVSKYTEGVNDK 93
G+Q++ S + E + ++
Sbjct: 485 GVQLDGSDHVEPLQNR 500
>gi|224102759|ref|XP_002312790.1| predicted protein [Populus trichocarpa]
gi|222849198|gb|EEE86745.1| predicted protein [Populus trichocarpa]
Length = 923
Score = 212 bits (540), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 106/146 (72%), Positives = 119/146 (81%), Gaps = 5/146 (3%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ + KE+IG C RFLQG +TD+NEV KIRDAV+NG SYCGRLLNYKK+GTPFWN
Sbjct: 169 MTGYSSKEIIGRNC----RFLQGADTDRNEVAKIRDAVKNGTSYCGRLLNYKKNGTPFWN 224
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLTVTPIKDD G IKFIGMQVEVSKYTEGVNDKA RPNGL KSLIRYDARQK KAL SI
Sbjct: 225 LLTVTPIKDDRGNAIKFIGMQVEVSKYTEGVNDKAFRPNGLPKSLIRYDARQKAKALDSI 284
Query: 120 TEVIQTVKRSQSHIRALSLDTTNKLE 145
TEV+QT+K +S R S DT++ L+
Sbjct: 285 TEVVQTLKHPKSPSRTASHDTSDHLD 310
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 51/76 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD++ V KIRDA+R + +L+NY K G FWNL + P++D G+ FI
Sbjct: 445 RFLQGPETDQSTVSKIRDAIREQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFI 504
Query: 78 GMQVEVSKYTEGVNDK 93
G+Q++ S + E + ++
Sbjct: 505 GVQLDGSDHVEPLRNR 520
>gi|401782494|dbj|BAM36550.1| phototropin 2 [Fragaria x ananassa]
Length = 944
Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 103/131 (78%), Positives = 114/131 (87%), Gaps = 5/131 (3%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ + KE+IG C RFLQGPETD+NEV KIR+AV+ G SYCGRL NYKKDGTPFWN
Sbjct: 177 MTGYSSKEVIGRNC----RFLQGPETDQNEVSKIRNAVKTGSSYCGRLYNYKKDGTPFWN 232
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLTVTPIKDD+GKTIKFIGMQVEVSK+TEGVN+KALRPNGL KSLIRYDARQKEKALGSI
Sbjct: 233 LLTVTPIKDDTGKTIKFIGMQVEVSKFTEGVNEKALRPNGLPKSLIRYDARQKEKALGSI 292
Query: 120 TEVIQTVKRSQ 130
EV+QTVK +
Sbjct: 293 AEVVQTVKHPR 303
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 51/76 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V+KIRDA+R + +L+NY K G FWNL + P++D G+ FI
Sbjct: 458 RFLQGPETDQATVQKIRDAIREQREITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFI 517
Query: 78 GMQVEVSKYTEGVNDK 93
G+Q++ S + E + ++
Sbjct: 518 GVQLDGSDHVEPLRNR 533
>gi|357167375|ref|XP_003581132.1| PREDICTED: phototropin-2-like [Brachypodium distachyon]
Length = 909
Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 93/145 (64%), Positives = 113/145 (77%), Gaps = 5/145 (3%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ + KE+IG C RFLQG ETD+ EV KIRDAV+ GKS+CGRLLNY+KDGTPFWN
Sbjct: 140 MTGYSAKEIIGRNC----RFLQGAETDQKEVSKIRDAVKAGKSFCGRLLNYRKDGTPFWN 195
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLTVTPI+DD GK IKFIGMQVEVSKYTEG++DK +RPN + SLIRYD RQ+E A+ S+
Sbjct: 196 LLTVTPIRDDQGKVIKFIGMQVEVSKYTEGLSDKCMRPNEMPVSLIRYDDRQRENAMSSM 255
Query: 120 TEVIQTVKRSQSHIRALSLDTTNKL 144
TEV+QTVK ++ + + T KL
Sbjct: 256 TEVVQTVKHRKADTPEMMMMETPKL 280
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 49/76 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ETD+ V+KIRDA+R K +L+NY K G FWNL + P+ D G+ FI
Sbjct: 431 RFLQGAETDQTTVDKIRDAIREQKEVTVQLINYTKSGKKFWNLFHLQPMWDQKGELQYFI 490
Query: 78 GMQVEVSKYTEGVNDK 93
G+Q++ S + E + ++
Sbjct: 491 GVQLDGSDHVEPLRNR 506
>gi|115457630|ref|NP_001052415.1| Os04g0304200 [Oryza sativa Japonica Group]
gi|113563986|dbj|BAF14329.1| Os04g0304200, partial [Oryza sativa Japonica Group]
Length = 771
Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 86/117 (73%), Positives = 104/117 (88%), Gaps = 1/117 (0%)
Query: 14 LLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKT 73
+LC RFLQGP+TD EV KIRDAV++G+S+CGRLLNY+KDG PFWNLLTVTPI+DD+GK
Sbjct: 1 VLC-RFLQGPDTDAAEVAKIRDAVKHGRSFCGRLLNYRKDGAPFWNLLTVTPIRDDNGKV 59
Query: 74 IKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRSQ 130
IKFIGMQVEVSKYTEG++DK +RPN L SLIRYD RQK+KA+ S+TEV+QTVK+ +
Sbjct: 60 IKFIGMQVEVSKYTEGLSDKRMRPNELPVSLIRYDERQKDKAMSSMTEVVQTVKQPR 116
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 51/76 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V+KIR+A+R K +L+NY K G FWNL + P++D G+ FI
Sbjct: 290 RFLQGPETDQGTVDKIREAIREQKEITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFI 349
Query: 78 GMQVEVSKYTEGVNDK 93
G+Q++ S + E + ++
Sbjct: 350 GVQLDGSDHVEPLRNR 365
>gi|226531740|ref|NP_001147477.1| phototropin-1 [Zea mays]
gi|195611646|gb|ACG27653.1| phototropin-1 [Zea mays]
Length = 899
Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 93/138 (67%), Positives = 110/138 (79%), Gaps = 9/138 (6%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE+ G C RFLQGP+TD NEV KIRDAV+ G+S+CGRLLNY+KDGTPFWN
Sbjct: 130 MTGYTPKEVTGRNC----RFLQGPDTDMNEVAKIRDAVKTGRSFCGRLLNYRKDGTPFWN 185
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
+LTVTPI+DD+GK IKFIGMQVEVSKYTEG+++K +RPN + SLI YD RQKE A+ SI
Sbjct: 186 MLTVTPIRDDNGKVIKFIGMQVEVSKYTEGLSEKRMRPNEMPVSLIHYDDRQKETAMSSI 245
Query: 120 TEVIQTVKRSQSHIRALS 137
TEV+QTVK H RA S
Sbjct: 246 TEVVQTVK----HPRARS 259
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 51/76 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD + V+KIR+A+R K +L+NY K G FWNL + P++D G+ FI
Sbjct: 420 RFLQGPETDMSTVDKIREAIREQKEITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFI 479
Query: 78 GMQVEVSKYTEGVNDK 93
G+Q++ S + E + ++
Sbjct: 480 GVQLDGSDHVEPLRNR 495
>gi|222628578|gb|EEE60710.1| hypothetical protein OsJ_14207 [Oryza sativa Japonica Group]
Length = 888
Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 84/113 (74%), Positives = 101/113 (89%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD EV KIRDAV++G+S+CGRLLNY+KDG PFWNLLTVTPI+DD+GK IKFI
Sbjct: 140 RFLQGPDTDAAEVAKIRDAVKHGRSFCGRLLNYRKDGAPFWNLLTVTPIRDDNGKVIKFI 199
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRSQ 130
GMQVEVSKYTEG++DK +RPN L SLIRYD RQK+KA+ S+TEV+QTVK+ +
Sbjct: 200 GMQVEVSKYTEGLSDKRMRPNELPVSLIRYDERQKDKAMSSMTEVVQTVKQPR 252
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 51/76 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V+KIR+A+R K +L+NY K G FWNL + P++D G+ FI
Sbjct: 407 RFLQGPETDQGTVDKIREAIREQKEITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFI 466
Query: 78 GMQVEVSKYTEGVNDK 93
G+Q++ S + E + ++
Sbjct: 467 GVQLDGSDHVEPLRNR 482
>gi|414870627|tpg|DAA49184.1| TPA: putative phototropin family protein kinase [Zea mays]
Length = 905
Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 93/138 (67%), Positives = 110/138 (79%), Gaps = 9/138 (6%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE+ G C RFLQGP+TD NEV KIRDAV+ G+S+CGRLLNY+KDGTPFWN
Sbjct: 138 MTGYTPKEVTGRNC----RFLQGPDTDMNEVAKIRDAVKTGRSFCGRLLNYRKDGTPFWN 193
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
+LTVTPI+DD+GK IKFIGMQVEVSKYTEG+++K +RPN + SLI YD RQKE A+ SI
Sbjct: 194 MLTVTPIRDDNGKVIKFIGMQVEVSKYTEGLSEKRMRPNEMPVSLIHYDDRQKETAMSSI 253
Query: 120 TEVIQTVKRSQSHIRALS 137
TEV+QTVK H RA S
Sbjct: 254 TEVVQTVK----HPRARS 267
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 51/76 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD + V+KIR+A+R K +L+NY K G FWNL + P++D G+ FI
Sbjct: 426 RFLQGPETDMSTVDKIREAIREQKEITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFI 485
Query: 78 GMQVEVSKYTEGVNDK 93
G+Q++ S + E + ++
Sbjct: 486 GVQLDGSDHVEPLRNR 501
>gi|414870626|tpg|DAA49183.1| TPA: putative phototropin family protein kinase [Zea mays]
Length = 703
Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 93/138 (67%), Positives = 110/138 (79%), Gaps = 9/138 (6%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE+ G C RFLQGP+TD NEV KIRDAV+ G+S+CGRLLNY+KDGTPFWN
Sbjct: 138 MTGYTPKEVTGRNC----RFLQGPDTDMNEVAKIRDAVKTGRSFCGRLLNYRKDGTPFWN 193
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
+LTVTPI+DD+GK IKFIGMQVEVSKYTEG+++K +RPN + SLI YD RQKE A+ SI
Sbjct: 194 MLTVTPIRDDNGKVIKFIGMQVEVSKYTEGLSEKRMRPNEMPVSLIHYDDRQKETAMSSI 253
Query: 120 TEVIQTVKRSQSHIRALS 137
TEV+QTVK H RA S
Sbjct: 254 TEVVQTVK----HPRARS 267
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 51/76 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD + V+KIR+A+R K +L+NY K G FWNL + P++D G+ FI
Sbjct: 426 RFLQGPETDMSTVDKIREAIREQKEITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFI 485
Query: 78 GMQVEVSKYTEGVNDK 93
G+Q++ S + E + ++
Sbjct: 486 GVQLDGSDHVEPLRNR 501
>gi|218194566|gb|EEC76993.1| hypothetical protein OsI_15306 [Oryza sativa Indica Group]
Length = 1015
Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 84/113 (74%), Positives = 101/113 (89%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD EV KIRDAV++G+S+CGRLLNY+KDG PFWNLLTVTPI+DD+GK IKFI
Sbjct: 140 RFLQGPDTDAAEVAKIRDAVKHGRSFCGRLLNYRKDGAPFWNLLTVTPIRDDNGKVIKFI 199
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRSQ 130
GMQVEVSKYTEG++DK +RPN L SLIRYD RQK+KA+ S+TEV+QTVK+ +
Sbjct: 200 GMQVEVSKYTEGLSDKRMRPNELPVSLIRYDERQKDKAMSSMTEVVQTVKQPR 252
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 51/76 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V+KIR+A+R K +L+NY K G FWNL + P++D G+ FI
Sbjct: 426 RFLQGPETDQGTVDKIREAIREQKEITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFI 485
Query: 78 GMQVEVSKYTEGVNDK 93
G+Q++ S + E + ++
Sbjct: 486 GVQLDGSDHVEPLRNR 501
>gi|75337608|sp|Q9ST27.1|PHOT2_ORYSJ RecName: Full=Phototropin-2; AltName: Full=Non-phototropic
hypocotyl protein 1B; Short=OsNPH1B
gi|6006310|dbj|BAA84779.1| nonphototrophic hypocotyl 1b [Oryza sativa Japonica Group]
gi|38344593|emb|CAD40495.2| OSJNBa0079M09.13 [Oryza sativa Japonica Group]
gi|116308943|emb|CAH66070.1| OSIGBa0092O07.5 [Oryza sativa Indica Group]
Length = 907
Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 84/113 (74%), Positives = 101/113 (89%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD EV KIRDAV++G+S+CGRLLNY+KDG PFWNLLTVTPI+DD+GK IKFI
Sbjct: 140 RFLQGPDTDAAEVAKIRDAVKHGRSFCGRLLNYRKDGAPFWNLLTVTPIRDDNGKVIKFI 199
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRSQ 130
GMQVEVSKYTEG++DK +RPN L SLIRYD RQK+KA+ S+TEV+QTVK+ +
Sbjct: 200 GMQVEVSKYTEGLSDKRMRPNELPVSLIRYDERQKDKAMSSMTEVVQTVKQPR 252
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 51/76 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V+KIR+A+R K +L+NY K G FWNL + P++D G+ FI
Sbjct: 426 RFLQGPETDQGTVDKIREAIREQKEITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFI 485
Query: 78 GMQVEVSKYTEGVNDK 93
G+Q++ S + E + ++
Sbjct: 486 GVQLDGSDHVEPLRNR 501
>gi|242081217|ref|XP_002445377.1| hypothetical protein SORBIDRAFT_07g014860 [Sorghum bicolor]
gi|241941727|gb|EES14872.1| hypothetical protein SORBIDRAFT_07g014860 [Sorghum bicolor]
Length = 890
Score = 184 bits (468), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 86/120 (71%), Positives = 102/120 (85%), Gaps = 4/120 (3%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD +EV KIRDAV+ G+S+CGRLLNY+KDGTPFWN+LTVTPI+DD+GK IKFI
Sbjct: 141 RFLQGPDTDMDEVAKIRDAVKTGRSFCGRLLNYRKDGTPFWNMLTVTPIRDDNGKVIKFI 200
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRSQSHIRALS 137
GMQVEVSKYTEG+++K +RPN + SLI YD RQKE A+ SITEV+QTVK H RA S
Sbjct: 201 GMQVEVSKYTEGLSEKRMRPNEMPVSLIHYDDRQKETAMSSITEVVQTVK----HPRARS 256
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ETD + V+KIR+A+R K +L+NY K G FWNL + P++D G+ FI
Sbjct: 409 RFLQGAETDMSTVDKIREAIREQKEITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFI 468
Query: 78 GMQVEVSKYTEGVNDK 93
G+Q++ S + E + ++
Sbjct: 469 GVQLDGSDHVEPLRNR 484
>gi|255582071|ref|XP_002531832.1| serine/threonine protein kinase, putative [Ricinus communis]
gi|223528528|gb|EEF30552.1| serine/threonine protein kinase, putative [Ricinus communis]
Length = 1006
Score = 181 bits (460), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 94/151 (62%), Positives = 114/151 (75%), Gaps = 9/151 (5%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE+IG C RFLQG +TD +V KIR+A+++ SYCGRLLNYKKDGTPFWN
Sbjct: 231 MTGYTSKEVIGRNC----RFLQGADTDPEDVAKIREALQSENSYCGRLLNYKKDGTPFWN 286
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT++PIKD+SGK +K+IGMQVEVSK+TEG DK LRPNGL +SLIRYDARQKE A S+
Sbjct: 287 LLTISPIKDESGKVLKYIGMQVEVSKFTEGSKDKMLRPNGLPESLIRYDARQKEMATSSV 346
Query: 120 TEVIQTVKRSQSHIRALSLDTTNKLEEKRSS 150
TE++Q VKR R+LS T+ L K S
Sbjct: 347 TELVQAVKRP----RSLSEATSRPLMRKSES 373
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 46/71 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD V KIR+A+ N +L+NY K G FWNL + P++D G+ FI
Sbjct: 531 RFLQGPETDPATVRKIREAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFI 590
Query: 78 GMQVEVSKYTE 88
G+Q++ S++ E
Sbjct: 591 GVQLDGSEHVE 601
>gi|449460993|ref|XP_004148228.1| PREDICTED: phototropin-1-like [Cucumis sativus]
Length = 952
Score = 181 bits (459), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 94/152 (61%), Positives = 112/152 (73%), Gaps = 9/152 (5%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE+IG C RFLQG +TD +V KIR+A++ G SYCGRLLNYKKDGTPFWN
Sbjct: 158 MTGYTSKEVIGRNC----RFLQGADTDPEDVAKIREALQAGTSYCGRLLNYKKDGTPFWN 213
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT++PIKDD GK +K IGMQVEVSK+TEG DK +RPNGL +SLIRYDARQKE A S+
Sbjct: 214 LLTISPIKDDDGKVLKLIGMQVEVSKHTEGFKDKMVRPNGLPESLIRYDARQKEMATSSV 273
Query: 120 TEVIQTVKRSQS----HIRALSLDTTNKLEEK 147
TE++Q VKR +S RALS +L K
Sbjct: 274 TELVQAVKRPRSLSEYRPRALSESMNRRLFRK 305
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 51/75 (68%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V+KIRDA+ N +L+NY K G FWNL + P++D G+ FI
Sbjct: 469 RFLQGPETDRTTVKKIRDAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFI 528
Query: 78 GMQVEVSKYTEGVND 92
G+Q++ S++ E +++
Sbjct: 529 GVQLDGSQHVEPLSN 543
>gi|356558407|ref|XP_003547498.1| PREDICTED: phototropin-1-like [Glycine max]
Length = 978
Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 91/138 (65%), Positives = 110/138 (79%), Gaps = 9/138 (6%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE+IG C RFLQG +TD +V KIR+A+++GK YCGRLLNYKKDGTPFWN
Sbjct: 189 MTGYTSKEVIGRNC----RFLQGADTDPEDVAKIREALQSGKIYCGRLLNYKKDGTPFWN 244
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT++PIKD+ GK +KFIGMQVEVSK+TEG +K LRPNGL +SLIRYDARQKEKA S+
Sbjct: 245 LLTISPIKDEDGKVLKFIGMQVEVSKHTEGSKEKMLRPNGLPESLIRYDARQKEKATSSV 304
Query: 120 TEVIQTVKRSQSHIRALS 137
TE++Q +KR RALS
Sbjct: 305 TELLQAMKRP----RALS 318
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 49/75 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD V KIR+A+ N +L+NY K G FWNL + P++D G+ FI
Sbjct: 497 RFLQGPETDPATVRKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFI 556
Query: 78 GMQVEVSKYTEGVND 92
G+Q++ S++ E +++
Sbjct: 557 GVQLDGSQHVEPLHN 571
>gi|356550222|ref|XP_003543487.1| PREDICTED: phototropin-1-like [Glycine max]
Length = 982
Score = 178 bits (451), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 89/132 (67%), Positives = 106/132 (80%), Gaps = 9/132 (6%)
Query: 7 KELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTP 65
KE+IG C RFLQG +TD +V KIR+A++ GK YCGRLLNYKKDGTPFWNLLT++P
Sbjct: 197 KEVIGRNC----RFLQGADTDPEDVAKIREALQAGKIYCGRLLNYKKDGTPFWNLLTISP 252
Query: 66 IKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQT 125
IKD+ GK +KFIGMQVEVSK+TEG +K LRPNGL +SLIRYDARQKEKA S+TE++Q
Sbjct: 253 IKDEDGKVLKFIGMQVEVSKHTEGSKEKTLRPNGLPESLIRYDARQKEKATSSVTELLQA 312
Query: 126 VKRSQSHIRALS 137
+KR RALS
Sbjct: 313 MKRP----RALS 320
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 49/75 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD V KIR+A+ N +L+NY K G FWNL + P++D G+ FI
Sbjct: 497 RFLQGPETDPATVNKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFI 556
Query: 78 GMQVEVSKYTEGVND 92
G+Q++ S++ E +++
Sbjct: 557 GVQLDGSQHVEPLHN 571
>gi|401782496|dbj|BAM36551.1| phototropin 1 [Fragaria x ananassa]
Length = 1028
Score = 177 bits (450), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 86/132 (65%), Positives = 105/132 (79%), Gaps = 5/132 (3%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE+IG C RFLQG +TD +V ++R+A+ SYCGRLLNYKKDGTPFWN
Sbjct: 242 MTGYTSKEVIGRNC----RFLQGADTDPEDVAQLREALAKNTSYCGRLLNYKKDGTPFWN 297
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT+ PIKD++GK +KFIGMQVEVSK+TEG DK LRPNGL +SLIRYDARQKEKA S+
Sbjct: 298 LLTIAPIKDETGKVLKFIGMQVEVSKHTEGSKDKMLRPNGLPESLIRYDARQKEKATHSV 357
Query: 120 TEVIQTVKRSQS 131
TE++Q V+R +S
Sbjct: 358 TELVQAVRRPRS 369
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 49/75 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD V+KIR+A+ N +L+NY K G FWN+ + P++D G+ FI
Sbjct: 546 RFLQGPETDPATVKKIREAIDNQTEVTVQLINYTKSGKKFWNVFHLQPMRDQKGEVQYFI 605
Query: 78 GMQVEVSKYTEGVND 92
G+Q++ S++ E + +
Sbjct: 606 GVQLDGSQHIEPLQN 620
>gi|449521880|ref|XP_004167957.1| PREDICTED: LOW QUALITY PROTEIN: phototropin-1-like, partial
[Cucumis sativus]
Length = 760
Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/114 (71%), Positives = 96/114 (84%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD +V KIR+A++ G SYCGRLLNYKKDGTPFWNLLT++PIKDD GK +K I
Sbjct: 1 RFLQGADTDPEDVAKIREALQAGTSYCGRLLNYKKDGTPFWNLLTISPIKDDDGKVLKLI 60
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRSQS 131
GMQVEVSK+TEG DK +RPNGL +SLIRYDARQKE A S+TE++Q VKR +S
Sbjct: 61 GMQVEVSKHTEGFKDKMVRPNGLPESLIRYDARQKEMATSSVTELVQAVKRPRS 114
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 51/75 (68%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V+KIRDA+ N +L+NY K G FWNL + P++D G+ FI
Sbjct: 277 RFLQGPETDRTTVKKIRDAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFI 336
Query: 78 GMQVEVSKYTEGVND 92
G+Q++ S++ E +++
Sbjct: 337 GVQLDGSQHVEPLSN 351
>gi|302779868|ref|XP_002971709.1| hypothetical protein SELMODRAFT_172224 [Selaginella moellendorffii]
gi|300160841|gb|EFJ27458.1| hypothetical protein SELMODRAFT_172224 [Selaginella moellendorffii]
Length = 930
Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 87/138 (63%), Positives = 108/138 (78%), Gaps = 5/138 (3%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE+IG C RFLQG TD +V KIRDA+R G+S+CGRLLNYKKDGTPFWN
Sbjct: 173 MTGYTSKEVIGRNC----RFLQGSGTDPIDVSKIRDALREGQSFCGRLLNYKKDGTPFWN 228
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT+ PIKD++GK +K+IGMQVEVSK TEG + ALRPNGL +SLIRYDARQK+KA+ S+
Sbjct: 229 LLTIAPIKDENGKILKYIGMQVEVSKSTEGKKESALRPNGLPESLIRYDARQKDKAVHSV 288
Query: 120 TEVIQTVKRSQSHIRALS 137
TE+++ VKR I ++
Sbjct: 289 TELVEAVKRPHPLIEPVA 306
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 63/109 (57%), Gaps = 1/109 (0%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD V+KIRDA+R + +LLNY K G PFWNL + +KD+ G+ FI
Sbjct: 448 RFLQGAGTDVETVKKIRDAIREQRDITVQLLNYTKSGKPFWNLFHLQAMKDNKGELQYFI 507
Query: 78 GMQVEVSKYTEGVNDK-ALRPNGLSKSLIRYDARQKEKALGSITEVIQT 125
G+Q++ S+Y E + + + R ++R A ++A+ + + QT
Sbjct: 508 GVQLDGSEYIEPIRQRLSERTEQEGAKVVRATAANVDEAVRELPDANQT 556
>gi|302819840|ref|XP_002991589.1| hypothetical protein SELMODRAFT_186203 [Selaginella moellendorffii]
gi|300140622|gb|EFJ07343.1| hypothetical protein SELMODRAFT_186203 [Selaginella moellendorffii]
Length = 926
Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 87/138 (63%), Positives = 108/138 (78%), Gaps = 5/138 (3%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE+IG C RFLQG TD +V KIRDA+R G+S+CGRLLNYKKDGTPFWN
Sbjct: 173 MTGYTSKEVIGRNC----RFLQGSGTDPIDVSKIRDALREGESFCGRLLNYKKDGTPFWN 228
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT+ PIKD++GK +K+IGMQVEVSK TEG + ALRPNGL +SLIRYDARQK+KA+ S+
Sbjct: 229 LLTIAPIKDENGKILKYIGMQVEVSKSTEGKKESALRPNGLPESLIRYDARQKDKAVHSV 288
Query: 120 TEVIQTVKRSQSHIRALS 137
TE+++ VKR I ++
Sbjct: 289 TELVEAVKRPHPLIEPVA 306
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 63/109 (57%), Gaps = 1/109 (0%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD V+KIRDA++ + +LLNY K G PFWNL + +KD+ G+ FI
Sbjct: 448 RFLQGAGTDVETVKKIRDAIKEQRDITVQLLNYTKSGKPFWNLFHLQAMKDNQGELQYFI 507
Query: 78 GMQVEVSKYTEGVNDK-ALRPNGLSKSLIRYDARQKEKALGSITEVIQT 125
G+Q++ S+Y E + + + R ++R A ++A+ + + QT
Sbjct: 508 GVQLDGSEYIEPIRQRLSERTEQEGAKVVRATAANVDEAVRELPDANQT 556
>gi|60099456|dbj|BAD89967.1| phototropin [Phaseolus vulgaris]
Length = 987
Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/138 (65%), Positives = 108/138 (78%), Gaps = 9/138 (6%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE+IG C RFLQG ETD +V KIR+A+ GK YCGRLLNYKKDGTPFWN
Sbjct: 192 MTGYTSKEVIGRNC----RFLQGAETDCGDVAKIREALEAGKIYCGRLLNYKKDGTPFWN 247
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT+TPIKD+ GK +KFIGM VEVSK+TEG+ +K LRPNGL +SLIRYDARQKEKA S+
Sbjct: 248 LLTITPIKDEDGKVLKFIGMLVEVSKHTEGLKEKTLRPNGLPESLIRYDARQKEKATNSV 307
Query: 120 TEVIQTVKRSQSHIRALS 137
+E++Q +KR RALS
Sbjct: 308 SELLQIMKRP----RALS 321
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 48/75 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD V KIR+A+ N +L+NY K G FWNL + P++D G+ FI
Sbjct: 502 RFLQGPETDPATVRKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFI 561
Query: 78 GMQVEVSKYTEGVND 92
G+Q++ S++ E + +
Sbjct: 562 GVQLDGSQHVEPLQN 576
>gi|168043568|ref|XP_001774256.1| PHOTA1 phototropin A1 blue light photoreceptor [Physcomitrella
patens subsp. patens]
gi|50510311|dbj|BAD32622.1| phototropin [Physcomitrella patens]
gi|162674383|gb|EDQ60892.1| PHOTA1 phototropin A1 blue light photoreceptor [Physcomitrella
patens subsp. patens]
Length = 1070
Score = 176 bits (445), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 85/130 (65%), Positives = 104/130 (80%), Gaps = 3/130 (2%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
MS + KE+IG C RFLQGP+TD +VEKIR AV+NGK++CGRLLNY+KDG+ FWNL
Sbjct: 274 MSGYSAKEIIGHN--C-RFLQGPDTDPADVEKIRHAVKNGKNFCGRLLNYRKDGSTFWNL 330
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
LT+TPIKD++ K +KFIGMQVEVSKYTEG A RPNGL +SLIRYDARQK+KA S+T
Sbjct: 331 LTITPIKDENDKVVKFIGMQVEVSKYTEGAKAVARRPNGLPESLIRYDARQKDKATESVT 390
Query: 121 EVIQTVKRSQ 130
E++ K+ Q
Sbjct: 391 ELVGAFKKPQ 400
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 50/71 (70%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD+N V+KIRDA++ + +LLNY K G PFWNL + ++D G+ FI
Sbjct: 568 RFLQGPDTDQNTVQKIRDAIKENRDITVQLLNYTKSGKPFWNLFHLQAMRDHKGELQYFI 627
Query: 78 GMQVEVSKYTE 88
G+Q++ S+Y E
Sbjct: 628 GVQMDGSEYVE 638
>gi|224055599|ref|XP_002298559.1| predicted protein [Populus trichocarpa]
gi|222845817|gb|EEE83364.1| predicted protein [Populus trichocarpa]
Length = 977
Score = 175 bits (444), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 93/148 (62%), Positives = 106/148 (71%), Gaps = 9/148 (6%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE+IG C RFLQG TD +V KIR+A+R +YCGRLLNYKKDG+PFWN
Sbjct: 200 MTGYTSKEVIGRNC----RFLQGAGTDPEDVAKIREALRGEGTYCGRLLNYKKDGSPFWN 255
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT+ PIKDDSGK +KFIGM VEVSK+TEG DK LRPNGL SLIRYDARQKE A S+
Sbjct: 256 LLTIAPIKDDSGKVLKFIGMLVEVSKHTEGSKDKTLRPNGLPGSLIRYDARQKEMATSSV 315
Query: 120 TEVIQTVKRSQSHIRALSLDTTNKLEEK 147
TE++Q V R RALS T L K
Sbjct: 316 TELVQAVNRP----RALSESTNRPLMRK 339
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 46/71 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD V KIR+A+ N +L+NY K G FWNL + P++D G+ FI
Sbjct: 495 RFLQGPETDPATVRKIREAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFI 554
Query: 78 GMQVEVSKYTE 88
G+Q++ S++ E
Sbjct: 555 GVQLDGSEHVE 565
>gi|356542583|ref|XP_003539746.1| PREDICTED: phototropin-1-like [Glycine max]
Length = 977
Score = 175 bits (444), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 88/151 (58%), Positives = 114/151 (75%), Gaps = 9/151 (5%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE+IG C RF+QG +TD ++V KIR+A+++G +YCGRLLNYKKDGTPFWN
Sbjct: 201 MTGYTSKEVIGRNC----RFMQGADTDPDDVAKIREALQSGSTYCGRLLNYKKDGTPFWN 256
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT+ PIKDD G+ +KFIGMQVEVSK+TEG +K LRPNGL +SLIRYDARQKEKA ++
Sbjct: 257 LLTIAPIKDDDGRVLKFIGMQVEVSKHTEGAKEKMLRPNGLPESLIRYDARQKEKANSTV 316
Query: 120 TEVIQTVKRSQSHIRALSLDTTNKLEEKRSS 150
+E++ V+R RALS + +K +S
Sbjct: 317 SELLLAVRRP----RALSESAGRPMIKKSAS 343
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD V KIR+A+ N +L+NY K G FWNL + P++D G+ FI
Sbjct: 496 RFLQGPETDPATVRKIREAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFI 555
Query: 78 GMQVEVSKYTEGVNDK 93
G+Q++ S++ E ++++
Sbjct: 556 GVQLDGSQHVEPLHNR 571
>gi|357472521|ref|XP_003606545.1| Phototropin [Medicago truncatula]
gi|355507600|gb|AES88742.1| Phototropin [Medicago truncatula]
Length = 940
Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 83/129 (64%), Positives = 102/129 (79%), Gaps = 5/129 (3%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE+IG C RF+QG +TD N+V KIR+++ G +YCGRLLNYKKDGTPFWN
Sbjct: 188 MTGYTSKEVIGRNC----RFMQGADTDPNDVAKIRESLAAGTTYCGRLLNYKKDGTPFWN 243
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT+ PIKD++GK +K IGMQVEVSK+TEG +K LRPNGL KSLIRYDARQKEKA S+
Sbjct: 244 LLTIAPIKDENGKILKLIGMQVEVSKHTEGTKEKMLRPNGLPKSLIRYDARQKEKANSSV 303
Query: 120 TEVIQTVKR 128
E+++ V R
Sbjct: 304 NELVEAVSR 312
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD V+KIR A+ N +L+NY K G FWNL + P++D G+ FI
Sbjct: 496 RFLQGPETDPATVKKIRQAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFI 555
Query: 78 GMQVEVSKYTEGVNDK 93
G+Q++ S++ E ++++
Sbjct: 556 GVQLDGSQHVEPLHNR 571
>gi|312282323|dbj|BAJ34027.1| unnamed protein product [Thellungiella halophila]
Length = 997
Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 91/151 (60%), Positives = 113/151 (74%), Gaps = 10/151 (6%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE++G C RFLQG TD +E+ KIR+ + G +YCGRLLNYKKDGT FWN
Sbjct: 220 MTGYTSKEVVGRNC----RFLQGSGTDADELAKIRETLAAGNNYCGRLLNYKKDGTSFWN 275
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT+ PIKD+SGK +KFIGMQVEVSK+TEG +K LRPNGL +SLIRYDARQK+ A S+
Sbjct: 276 LLTIAPIKDESGKVLKFIGMQVEVSKHTEGAKEKTLRPNGLPESLIRYDARQKDIATNSV 335
Query: 120 TEVIQTVKRSQSHIRALSLDTTNKLEEKRSS 150
TE+++ VKR RALS ++TN+ KR S
Sbjct: 336 TELVEAVKRP----RALS-ESTNQHPFKRKS 361
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 48/75 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD V+KIR A+ N +L+NY K G FWN+ + P++D G+ FI
Sbjct: 512 RFLQGPETDPTTVKKIRAAIDNQTEVTVQLINYTKSGKKFWNIFHLQPMRDQKGEVQYFI 571
Query: 78 GMQVEVSKYTEGVND 92
G+Q++ SK+ E V +
Sbjct: 572 GVQLDGSKHVEPVRN 586
>gi|168044289|ref|XP_001774614.1| PHOTA2 phototropin A2 blue light photoreceptor [Physcomitrella
patens subsp. patens]
gi|50510313|dbj|BAD32623.1| phototropin [Physcomitrella patens]
gi|162674034|gb|EDQ60548.1| PHOTA2 phototropin A2 blue light photoreceptor [Physcomitrella
patens subsp. patens]
Length = 1095
Score = 172 bits (436), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 85/123 (69%), Positives = 99/123 (80%), Gaps = 3/123 (2%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ + KE+IG C RFLQGP+TD EVEKIR AVR GK +CGRLLNY+KDGT FWNL
Sbjct: 308 MTGYSPKEVIGYN--C-RFLQGPDTDPMEVEKIRQAVRTGKPFCGRLLNYRKDGTQFWNL 364
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
LT+TPIKD++ K IKFIGMQVEVSKYTEG A RPNGL +SLIRYDARQK+KA S+T
Sbjct: 365 LTITPIKDENDKVIKFIGMQVEVSKYTEGAKAVARRPNGLPESLIRYDARQKDKATESVT 424
Query: 121 EVI 123
E++
Sbjct: 425 ELV 427
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 61/100 (61%), Gaps = 1/100 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD+N V++IRDA++ + +LLNY K G PFWNL + ++D G+ FI
Sbjct: 605 RFLQGQDTDQNTVQQIRDAIKENRDITVQLLNYTKSGKPFWNLFHLQAMRDQRGELQYFI 664
Query: 78 GMQVEVSKYTEGVNDK-ALRPNGLSKSLIRYDARQKEKAL 116
G+Q++ S+Y E V + + S L+R AR + A+
Sbjct: 665 GVQLDGSQYVEPVRHRLSDNTEKASAKLVRETARNIDVAV 704
>gi|357454021|ref|XP_003597291.1| Phototropin [Medicago truncatula]
gi|355486339|gb|AES67542.1| Phototropin [Medicago truncatula]
Length = 1053
Score = 172 bits (436), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 88/138 (63%), Positives = 106/138 (76%), Gaps = 9/138 (6%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE+IG C RFLQG +TD +V KIR+A+ GKSYCGRLLNYKKDGTPFWN
Sbjct: 181 MTGYTSKEVIGRNC----RFLQGADTDPQDVAKIREALEGGKSYCGRLLNYKKDGTPFWN 236
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT++PIKDD G +K IGM VEV+K+TEG +K LRPNGL +SLIRYDARQKEKA S+
Sbjct: 237 LLTISPIKDDDGNVLKLIGMLVEVNKHTEGSKEKNLRPNGLPESLIRYDARQKEKASSSV 296
Query: 120 TEVIQTVKRSQSHIRALS 137
+E++Q +KR RALS
Sbjct: 297 SELLQAMKRP----RALS 310
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 49/75 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD V KIR+A+ N +L+NY + G FWNL + P++D G+ FI
Sbjct: 478 RFLQGPETDPATVRKIREAIDNQTEVTVQLINYTRTGKKFWNLFHLQPMRDHKGEVQYFI 537
Query: 78 GMQVEVSKYTEGVND 92
G+Q++ S++ E +++
Sbjct: 538 GVQLDGSQHVEPLHN 552
>gi|62320280|dbj|BAD94575.1| nonphototropic hypocotyl 1 [Arabidopsis thaliana]
Length = 731
Score = 172 bits (435), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 87/141 (61%), Positives = 107/141 (75%), Gaps = 9/141 (6%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE++G C RFLQG TD +E+ KIR+ + G +YCGR+LNYKKDGT FWN
Sbjct: 221 MTGYTSKEVVGRNC----RFLQGSGTDADELAKIRETLAAGNNYCGRILNYKKDGTSFWN 276
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT+ PIKD+SGK +KFIGMQVEVSK+TEG +KALRPNGL +SLIRYDARQK+ A S+
Sbjct: 277 LLTIAPIKDESGKVLKFIGMQVEVSKHTEGAKEKALRPNGLPESLIRYDARQKDMATNSV 336
Query: 120 TEVIQTVKRSQSHIRALSLDT 140
TE+++ VKR RALS T
Sbjct: 337 TELVEAVKRP----RALSEST 353
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 48/73 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD V+KIR+A+ N +L+NY K G FWN+ + P++D G+ FI
Sbjct: 513 RFLQGPETDLTTVKKIRNAIDNQTEVTVQLINYTKSGKKFWNIFHLQPMRDQKGEVQYFI 572
Query: 78 GMQVEVSKYTEGV 90
G+Q++ SK+ E V
Sbjct: 573 GVQLDGSKHVEPV 585
>gi|15231245|ref|NP_190164.1| non-specific serine/threonine protein kinase [Arabidopsis thaliana]
gi|79314333|ref|NP_001030814.1| non-specific serine/threonine protein kinase [Arabidopsis thaliana]
gi|25090817|sp|O48963.1|PHOT1_ARATH RecName: Full=Phototropin-1; AltName: Full=Non-phototropic
hypocotyl protein 1; AltName: Full=Root phototropism
protein 1
gi|13430612|gb|AAK25928.1|AF360218_1 putative nonphototropic hypocotyl 1 protein [Arabidopsis thaliana]
gi|2832241|gb|AAC01753.1| nonphototropic hypocotyl 1 [Arabidopsis thaliana]
gi|7019644|emb|CAB75791.1| nonphototropic hypocotyl 1 [Arabidopsis thaliana]
gi|14532876|gb|AAK64120.1| putative nonphototropic hypocotyl 1 protein [Arabidopsis thaliana]
gi|332644551|gb|AEE78072.1| non-specific serine/threonine protein kinase [Arabidopsis thaliana]
gi|332644552|gb|AEE78073.1| non-specific serine/threonine protein kinase [Arabidopsis thaliana]
Length = 996
Score = 171 bits (434), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 88/143 (61%), Positives = 110/143 (76%), Gaps = 10/143 (6%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE++G C RFLQG TD +E+ KIR+ + G +YCGR+LNYKKDGT FWN
Sbjct: 221 MTGYTSKEVVGRNC----RFLQGSGTDADELAKIRETLAAGNNYCGRILNYKKDGTSFWN 276
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT+ PIKD+SGK +KFIGMQVEVSK+TEG +KALRPNGL +SLIRYDARQK+ A S+
Sbjct: 277 LLTIAPIKDESGKVLKFIGMQVEVSKHTEGAKEKALRPNGLPESLIRYDARQKDMATNSV 336
Query: 120 TEVIQTVKRSQSHIRALSLDTTN 142
TE+++ VKR RALS ++TN
Sbjct: 337 TELVEAVKRP----RALS-ESTN 354
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 49/75 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD V+KIR+A+ N +L+NY K G FWN+ + P++D G+ FI
Sbjct: 513 RFLQGPETDLTTVKKIRNAIDNQTEVTVQLINYTKSGKKFWNIFHLQPMRDQKGEVQYFI 572
Query: 78 GMQVEVSKYTEGVND 92
G+Q++ SK+ E V +
Sbjct: 573 GVQLDGSKHVEPVRN 587
>gi|222422849|dbj|BAH19411.1| AT3G45780 [Arabidopsis thaliana]
Length = 826
Score = 171 bits (433), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 87/141 (61%), Positives = 107/141 (75%), Gaps = 9/141 (6%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE++G C RFLQG TD +E+ KIR+ + G +YCGR+LNYKKDGT FWN
Sbjct: 221 MTGYTSKEVVGRNC----RFLQGSGTDADELAKIRETLAAGNNYCGRILNYKKDGTSFWN 276
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT+ PIKD+SGK +KFIGMQVEVSK+TEG +KALRPNGL +SLIRYDARQK+ A S+
Sbjct: 277 LLTIAPIKDESGKVLKFIGMQVEVSKHTEGAKEKALRPNGLPESLIRYDARQKDMATNSV 336
Query: 120 TEVIQTVKRSQSHIRALSLDT 140
TE+++ VKR RALS T
Sbjct: 337 TELVEAVKRP----RALSEST 353
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 48/73 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD V+KIR+A+ N +L+NY K G FWN+ + P++D G+ FI
Sbjct: 513 RFLQGPETDLTTVKKIRNAIDNQTEVTVQLINYTKSGKKFWNIFHLQPMRDQKGEVQYFI 572
Query: 78 GMQVEVSKYTEGV 90
G+Q++ SK+ E V
Sbjct: 573 GVQLDGSKHVEPV 585
>gi|24899170|dbj|BAC23099.1| phototropin [Vicia faba]
Length = 970
Score = 171 bits (433), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 82/132 (62%), Positives = 105/132 (79%), Gaps = 5/132 (3%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE+IG C RFLQG +TD N+V +IR+A+ GKS+CGRLLNYKKDGTPFWN
Sbjct: 184 MTGYTSKEVIGRNC----RFLQGADTDPNDVARIREALEGGKSFCGRLLNYKKDGTPFWN 239
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT++PIKDD G +K IGM VEV+K+TEG +K LRPNGL +SLIRYDARQKEKA S+
Sbjct: 240 LLTISPIKDDDGNVLKLIGMLVEVNKHTEGSKEKKLRPNGLPESLIRYDARQKEKATSSV 299
Query: 120 TEVIQTVKRSQS 131
+E+++ +KR ++
Sbjct: 300 SELLEAMKRPRA 311
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 48/75 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ETD V KIR+A+ N +L+NY K G FWNL + P++D G+ FI
Sbjct: 480 RFLQGQETDPATVRKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDHKGEVQYFI 539
Query: 78 GMQVEVSKYTEGVND 92
G+Q++ S++ E +++
Sbjct: 540 GVQLDGSQHVEPLHN 554
>gi|350535803|ref|NP_001234214.1| phototropin-1 [Solanum lycopersicum]
gi|151176133|gb|ABN42185.2| phototropin-1 [Solanum lycopersicum]
Length = 1018
Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 85/144 (59%), Positives = 108/144 (75%), Gaps = 6/144 (4%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE+IG C RF+QG TD +V IR+A+++G +YCGRLLNYKKDGTPFWN
Sbjct: 227 MTGYTSKEVIGRNC----RFMQGSGTDPEDVATIREALQSGSTYCGRLLNYKKDGTPFWN 282
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT+ PIKDD+GK +KFIGMQVEVSK+TEG +K +RPNGL +SLIRYD RQKE A S+
Sbjct: 283 LLTIAPIKDDAGKVLKFIGMQVEVSKHTEGSKEKTVRPNGLPESLIRYDVRQKEMASNSV 342
Query: 120 TEVIQTVKRSQSHIRALSLDTTNK 143
E+++ +K + RALS T N+
Sbjct: 343 NELLEEIKNPR-RARALSESTNNR 365
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 6/114 (5%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD V+KIR A+ N +L+NY K G FWNL + P++D G+ FI
Sbjct: 536 RFLQGPETDPATVKKIRQAIDNQTDVTVQLINYTKTGKKFWNLFHLQPMRDQKGEVQYFI 595
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRSQS 131
G+Q++ S++ E + N + + A+ ++ G++ E ++ + + S
Sbjct: 596 GVQLDGSQHVEPLQ------NSIPEDKATESAKLIKETAGNVDEAVRELPDANS 643
>gi|225435157|ref|XP_002281752.1| PREDICTED: phototropin-1-like [Vitis vinifera]
Length = 1004
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 83/132 (62%), Positives = 103/132 (78%), Gaps = 5/132 (3%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE+IG C RFLQG TD +V KIR+A+ G SYCGRLLNYKKDGTPFWN
Sbjct: 232 MTGYTSKEVIGRNC----RFLQGSGTDPEDVAKIREALHAGNSYCGRLLNYKKDGTPFWN 287
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT++PIKD++G +KFIGMQVEVSK+TEG +K RPNGL +SLIRYDARQK+ A S+
Sbjct: 288 LLTISPIKDENGNVLKFIGMQVEVSKHTEGSKEKMTRPNGLPESLIRYDARQKDMATNSV 347
Query: 120 TEVIQTVKRSQS 131
+E++Q VK+ +S
Sbjct: 348 SELVQAVKKPRS 359
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 49/75 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD V KIR+A+ N +L+NY K G FWNL + P++D G+ FI
Sbjct: 522 RFLQGPETDPATVRKIREAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFI 581
Query: 78 GMQVEVSKYTEGVND 92
G+Q++ S++ E +++
Sbjct: 582 GVQLDGSEHVEPLHN 596
>gi|297746173|emb|CBI16229.3| unnamed protein product [Vitis vinifera]
Length = 958
Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 83/132 (62%), Positives = 103/132 (78%), Gaps = 5/132 (3%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE+IG C RFLQG TD +V KIR+A+ G SYCGRLLNYKKDGTPFWN
Sbjct: 186 MTGYTSKEVIGRNC----RFLQGSGTDPEDVAKIREALHAGNSYCGRLLNYKKDGTPFWN 241
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT++PIKD++G +KFIGMQVEVSK+TEG +K RPNGL +SLIRYDARQK+ A S+
Sbjct: 242 LLTISPIKDENGNVLKFIGMQVEVSKHTEGSKEKMTRPNGLPESLIRYDARQKDMATNSV 301
Query: 120 TEVIQTVKRSQS 131
+E++Q VK+ +S
Sbjct: 302 SELVQAVKKPRS 313
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 49/75 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD V KIR+A+ N +L+NY K G FWNL + P++D G+ FI
Sbjct: 476 RFLQGPETDPATVRKIREAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFI 535
Query: 78 GMQVEVSKYTEGVND 92
G+Q++ S++ E +++
Sbjct: 536 GVQLDGSEHVEPLHN 550
>gi|297815732|ref|XP_002875749.1| hypothetical protein ARALYDRAFT_484960 [Arabidopsis lyrata subsp.
lyrata]
gi|297321587|gb|EFH52008.1| hypothetical protein ARALYDRAFT_484960 [Arabidopsis lyrata subsp.
lyrata]
Length = 994
Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 88/143 (61%), Positives = 110/143 (76%), Gaps = 10/143 (6%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE++G C RFLQG TD +E+ KIR+ + G +YCGRLLNYKKDGT FWN
Sbjct: 221 MTGYTSKEVVGRNC----RFLQGSGTDADELAKIRETLAAGNNYCGRLLNYKKDGTSFWN 276
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT+ PIKD+SGK +KFIGMQVEVSK+TEG +K+LRPNGL +SLIRYDARQK+ A S+
Sbjct: 277 LLTIAPIKDESGKVLKFIGMQVEVSKHTEGAKEKSLRPNGLPESLIRYDARQKDIATNSV 336
Query: 120 TEVIQTVKRSQSHIRALSLDTTN 142
TE+++ VKR RALS ++TN
Sbjct: 337 TELVEAVKRP----RALS-ESTN 354
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 49/75 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD V+KIR+A+ N +L+NY K G FWN+ + P++D G+ FI
Sbjct: 513 RFLQGPETDLTTVKKIRNAIDNQTEVTVQLINYTKSGKKFWNIFHLQPMRDQKGEVQYFI 572
Query: 78 GMQVEVSKYTEGVND 92
G+Q++ SK+ E V +
Sbjct: 573 GVQLDGSKHVEPVRN 587
>gi|60099454|dbj|BAD89966.1| phototropin [Phaseolus vulgaris]
Length = 976
Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 85/138 (61%), Positives = 107/138 (77%), Gaps = 9/138 (6%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE+IG C RF+QG +TD ++V KIR+A++ G++YCGRLLNYKKDGTPFWN
Sbjct: 202 MTGYTSKEVIGRNC----RFMQGADTDPDDVAKIREALQTGQTYCGRLLNYKKDGTPFWN 257
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT+ PIKD G+ +KFIGMQVEVSK+TEG + LRPNGL +SLIRYDARQKEKA S+
Sbjct: 258 LLTIAPIKDHDGRVLKFIGMQVEVSKHTEGNKENMLRPNGLPESLIRYDARQKEKANSSV 317
Query: 120 TEVIQTVKRSQSHIRALS 137
+E++ V+R RALS
Sbjct: 318 SELLLAVRRP----RALS 331
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD V KIR+A+ +L+NY K G FWNL + P++D G+ FI
Sbjct: 496 RFLQGPETDPATVRKIREAIDTQTDVTVQLINYTKTGKKFWNLFHLQPMRDQKGEVQYFI 555
Query: 78 GMQVEVSKYTEGVNDK 93
G+Q++ S++ E ++++
Sbjct: 556 GVQLDGSQHVEPLHNR 571
>gi|20338415|gb|AAM15725.1| phototropin 1 [Pisum sativum]
Length = 976
Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 85/138 (61%), Positives = 107/138 (77%), Gaps = 9/138 (6%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE+IG C RFLQG +TD ++V +IR+A+ GKS+CGRLLNYKKDGTPFWN
Sbjct: 189 MTGYTSKEVIGRNC----RFLQGADTDPDDVARIREALEGGKSFCGRLLNYKKDGTPFWN 244
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT++PIKDD G +K IGM VEV+K+TEG +K LRPNGL +SLIRYDARQKEKA S+
Sbjct: 245 LLTISPIKDDDGNVLKLIGMLVEVNKHTEGSKEKKLRPNGLPESLIRYDARQKEKATSSV 304
Query: 120 TEVIQTVKRSQSHIRALS 137
+E+++ +KR RALS
Sbjct: 305 SELLEAMKRP----RALS 318
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 49/75 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD V KIR+A+ N +L+NY K G FWNL + P++D G+ FI
Sbjct: 486 RFLQGPETDPATVRKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDHKGEVQYFI 545
Query: 78 GMQVEVSKYTEGVND 92
G+Q++ S++ E +++
Sbjct: 546 GVQLDGSQHVEPLHN 560
>gi|12040650|gb|AAB41023.2| phototropin-like protein PsPK4 [Pisum sativum]
Length = 976
Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 85/138 (61%), Positives = 107/138 (77%), Gaps = 9/138 (6%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE+IG C RFLQG +TD ++V +IR+A+ GKS+CGRLLNYKKDGTPFWN
Sbjct: 189 MTGYTSKEVIGRNC----RFLQGADTDPDDVARIREALEGGKSFCGRLLNYKKDGTPFWN 244
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT++PIKDD G +K IGM VEV+K+TEG +K LRPNGL +SLIRYDARQKEKA S+
Sbjct: 245 LLTISPIKDDDGNVLKLIGMLVEVNKHTEGSKEKKLRPNGLPESLIRYDARQKEKATSSV 304
Query: 120 TEVIQTVKRSQSHIRALS 137
+E+++ +KR RALS
Sbjct: 305 SELLEAMKRP----RALS 318
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 49/75 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD V KIR+A+ N +L+NY K G FWNL + P++D G+ FI
Sbjct: 486 RFLQGPETDPATVRKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDHKGEVQYFI 545
Query: 78 GMQVEVSKYTEGVND 92
G+Q++ S++ E +++
Sbjct: 546 GVQLDGSQHVEPLHN 560
>gi|218186235|gb|EEC68662.1| hypothetical protein OsI_37109 [Oryza sativa Indica Group]
Length = 921
Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 84/148 (56%), Positives = 110/148 (74%), Gaps = 9/148 (6%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE++G C RFLQG TD +E++KIR ++ NG +YCGR+LNYKKDGTPFWN
Sbjct: 160 MTGYTSKEVVGRNC----RFLQGSGTDPHEIDKIRQSLANGSNYCGRILNYKKDGTPFWN 215
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT+ PIKD+ G+ +KFIGMQVEVSKYTEG D +RPNGLS+SLI+YDARQK+ A S+
Sbjct: 216 LLTIAPIKDEDGRLLKFIGMQVEVSKYTEGKKDTVVRPNGLSESLIKYDARQKDHARSSV 275
Query: 120 TEVIQTVKRSQSHIRALSLDTTNKLEEK 147
+E++ +K R+LS + N L+ K
Sbjct: 276 SELLLALKNP----RSLSESSNNTLKRK 299
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V KIRDA+ N +L+NY K G FWNL + P++D G FI
Sbjct: 451 RFLQGPETDRATVRKIRDAIDNQAEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFI 510
Query: 78 GMQVEVSKYTEGVNDKALR 96
G+Q++ TE V D A +
Sbjct: 511 GVQLDG---TEHVQDDAAK 526
>gi|125575911|gb|EAZ17133.1| hypothetical protein OsJ_32634 [Oryza sativa Japonica Group]
Length = 853
Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 84/148 (56%), Positives = 110/148 (74%), Gaps = 9/148 (6%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE++G C RFLQG TD +E++KIR ++ NG +YCGR+LNYKKDGTPFWN
Sbjct: 160 MTGYTSKEVVGRNC----RFLQGSGTDPHEIDKIRQSLANGSNYCGRILNYKKDGTPFWN 215
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT+ PIKD+ G+ +KFIGMQVEVSKYTEG D +RPNGLS+SLI+YDARQK+ A S+
Sbjct: 216 LLTIAPIKDEDGRLLKFIGMQVEVSKYTEGKKDTVVRPNGLSESLIKYDARQKDHARSSV 275
Query: 120 TEVIQTVKRSQSHIRALSLDTTNKLEEK 147
+E++ +K R+LS + N L+ K
Sbjct: 276 SELLLALKNP----RSLSESSNNTLKRK 299
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V KIRDA+ N +L+NY K G FWNL + P++D G FI
Sbjct: 451 RFLQGPETDRATVRKIRDAIDNQAEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFI 510
Query: 78 GMQVEVSKYTEGVNDKALR 96
G+Q++ TE V D A +
Sbjct: 511 GVQLDG---TEHVQDDAAK 526
>gi|115483707|ref|NP_001065225.1| Os11g0102200 [Oryza sativa Japonica Group]
gi|122248863|sp|Q2RBR1.2|PHT1B_ORYSJ RecName: Full=Phototropin-1B
gi|108863901|gb|ABA91098.2| Nonphototropic hypocotyl protein 1, putative, expressed [Oryza
sativa Japonica Group]
gi|113644219|dbj|BAF27360.1| Os11g0102200 [Oryza sativa Japonica Group]
Length = 921
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 84/148 (56%), Positives = 110/148 (74%), Gaps = 9/148 (6%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE++G C RFLQG TD +E++KIR ++ NG +YCGR+LNYKKDGTPFWN
Sbjct: 160 MTGYTSKEVVGRNC----RFLQGSGTDPHEIDKIRQSLANGSNYCGRILNYKKDGTPFWN 215
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT+ PIKD+ G+ +KFIGMQVEVSKYTEG D +RPNGLS+SLI+YDARQK+ A S+
Sbjct: 216 LLTIAPIKDEDGRLLKFIGMQVEVSKYTEGKKDTVVRPNGLSESLIKYDARQKDHARSSV 275
Query: 120 TEVIQTVKRSQSHIRALSLDTTNKLEEK 147
+E++ +K R+LS + N L+ K
Sbjct: 276 SELLLALKNP----RSLSESSNNTLKRK 299
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V KIRDA+ N +L+NY K G FWNL + P++D G FI
Sbjct: 451 RFLQGPETDRATVRKIRDAIDNQAEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFI 510
Query: 78 GMQVEVSKYTEGVNDKALR 96
G+Q++ TE V D A +
Sbjct: 511 GVQLDG---TEHVQDDAAK 526
>gi|24899168|dbj|BAC23098.1| phototropin [Vicia faba]
Length = 963
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 88/145 (60%), Positives = 110/145 (75%), Gaps = 9/145 (6%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE+IG C RF+QG +TD N+V KIR+A+ G SYCGRLLNYKKDGT FWN
Sbjct: 185 MTGYTSKEVIGRNC----RFMQGADTDPNDVAKIREALAAGTSYCGRLLNYKKDGTTFWN 240
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT+ PIKD+ GK +K IGMQVEVSK+TEG +K LRPNGL +SLIRYDARQKEKA S+
Sbjct: 241 LLTIAPIKDEHGKILKLIGMQVEVSKHTEGTKEKMLRPNGLPESLIRYDARQKEKANSSV 300
Query: 120 TEVIQTVKRSQSHIRALSLDTTNKL 144
TE+++ V + R+LS ++ N+L
Sbjct: 301 TELVEAVSKRP---RSLS-ESANRL 321
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 49/75 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD V+KIR A+ N +L+NY K G FWNL + P++D G+ FI
Sbjct: 484 RFLQGPETDPATVKKIRYAIDNQTEVTVQLINYTKTGKKFWNLFHLQPMRDQKGEVQYFI 543
Query: 78 GMQVEVSKYTEGVND 92
G+Q++ S++ E +++
Sbjct: 544 GVQLDGSQHVEPLHN 558
>gi|115486852|ref|NP_001065232.1| Os12g0101800 [Oryza sativa Japonica Group]
gi|122248708|sp|Q2QYY8.2|PHT1A_ORYSJ RecName: Full=Phototropin-1A; AltName: Full=Non-phototropic
hypocotyl protein 1A; Short=OsNPH1a
gi|108862060|gb|ABA95572.2| Nonphototropic hypocotyl protein 1, putative, expressed [Oryza
sativa Japonica Group]
gi|113648420|dbj|BAF28932.1| Os12g0101800 [Oryza sativa Japonica Group]
Length = 921
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 84/148 (56%), Positives = 110/148 (74%), Gaps = 9/148 (6%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE++G C RFLQG TD +E++KIR ++ NG +YCGR+LNYKKDGTPFWN
Sbjct: 160 MTGYTSKEVVGRNC----RFLQGSGTDPHEIDKIRQSLANGSNYCGRILNYKKDGTPFWN 215
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT+ PIKD+ G+ +KFIGMQVEVSKYTEG D +RPNGLS+SLI+YDARQK+ A S+
Sbjct: 216 LLTIAPIKDEDGRLLKFIGMQVEVSKYTEGKKDTVVRPNGLSESLIKYDARQKDHARSSV 275
Query: 120 TEVIQTVKRSQSHIRALSLDTTNKLEEK 147
+E++ +K R+LS + N L+ K
Sbjct: 276 SELLLALKNP----RSLSESSNNTLKRK 299
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V KIRDA+ N +L+NY K G FWNL + P++D G FI
Sbjct: 451 RFLQGPETDRATVRKIRDAIDNQAEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFI 510
Query: 78 GMQVEVSKYTEGVNDKALR 96
G+Q++ TE V D A +
Sbjct: 511 GVQLDG---TEHVQDDAAK 526
>gi|6006312|dbj|BAA84780.1| nonphototrophic hypocotyl 1a [Oryza sativa Japonica Group]
Length = 921
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 84/148 (56%), Positives = 110/148 (74%), Gaps = 9/148 (6%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE++G C RFLQG TD +E++KIR ++ NG +YCGR+LNYKKDGTPFWN
Sbjct: 160 MTGYTSKEVVGRNC----RFLQGSGTDPHEIDKIRQSLANGSNYCGRILNYKKDGTPFWN 215
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT+ PIKD+ G+ +KFIGMQVEVSKYTEG D +RPNGLS+SLI+YDARQK+ A S+
Sbjct: 216 LLTIAPIKDEDGRLLKFIGMQVEVSKYTEGKKDTVVRPNGLSESLIKYDARQKDHARSSV 275
Query: 120 TEVIQTVKRSQSHIRALSLDTTNKLEEK 147
+E++ +K R+LS + N L+ K
Sbjct: 276 SELLLALKNP----RSLSESSNNTLKRK 299
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V KIRDA+ N +L+NY K G FWNL + P++D G FI
Sbjct: 451 RFLQGPETDRATVRKIRDAIDNQAEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFI 510
Query: 78 GMQVEVSKYTEGVNDKALR 96
G+Q++ TE V D A +
Sbjct: 511 GVQLDG---TEHVQDDAAK 526
>gi|108863902|gb|ABG22325.1| Nonphototropic hypocotyl protein 1, putative, expressed [Oryza
sativa Japonica Group]
Length = 875
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 84/148 (56%), Positives = 110/148 (74%), Gaps = 9/148 (6%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE++G C RFLQG TD +E++KIR ++ NG +YCGR+LNYKKDGTPFWN
Sbjct: 160 MTGYTSKEVVGRNC----RFLQGSGTDPHEIDKIRQSLANGSNYCGRILNYKKDGTPFWN 215
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT+ PIKD+ G+ +KFIGMQVEVSKYTEG D +RPNGLS+SLI+YDARQK+ A S+
Sbjct: 216 LLTIAPIKDEDGRLLKFIGMQVEVSKYTEGKKDTVVRPNGLSESLIKYDARQKDHARSSV 275
Query: 120 TEVIQTVKRSQSHIRALSLDTTNKLEEK 147
+E++ +K R+LS + N L+ K
Sbjct: 276 SELLLALKNP----RSLSESSNNTLKRK 299
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V KIRDA+ N +L+NY K G FWNL + P++D G FI
Sbjct: 451 RFLQGPETDRATVRKIRDAIDNQAEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFI 510
Query: 78 GMQVEVSKYTEGVNDKALR 96
G+Q++ TE V D A +
Sbjct: 511 GVQLDG---TEHVQDDAAK 526
>gi|108862062|gb|ABG21842.1| Nonphototropic hypocotyl protein 1, putative, expressed [Oryza
sativa Japonica Group]
gi|108862063|gb|ABG21843.1| Nonphototropic hypocotyl protein 1, putative, expressed [Oryza
sativa Japonica Group]
Length = 854
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 84/148 (56%), Positives = 110/148 (74%), Gaps = 9/148 (6%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE++G C RFLQG TD +E++KIR ++ NG +YCGR+LNYKKDGTPFWN
Sbjct: 160 MTGYTSKEVVGRNC----RFLQGSGTDPHEIDKIRQSLANGSNYCGRILNYKKDGTPFWN 215
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT+ PIKD+ G+ +KFIGMQVEVSKYTEG D +RPNGLS+SLI+YDARQK+ A S+
Sbjct: 216 LLTIAPIKDEDGRLLKFIGMQVEVSKYTEGKKDTVVRPNGLSESLIKYDARQKDHARSSV 275
Query: 120 TEVIQTVKRSQSHIRALSLDTTNKLEEK 147
+E++ +K R+LS + N L+ K
Sbjct: 276 SELLLALKNP----RSLSESSNNTLKRK 299
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V KIRDA+ N +L+NY K G FWNL + P++D G FI
Sbjct: 451 RFLQGPETDRATVRKIRDAIDNQAEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFI 510
Query: 78 GMQVEVSKYTEGVNDKALR 96
G+Q++ TE V D A +
Sbjct: 511 GVQLDG---TEHVQDDAAK 526
>gi|6688928|emb|CAB65325.1| non-phototropic hypocotyl NPH1 [Oryza sativa Indica Group]
Length = 921
Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 84/148 (56%), Positives = 110/148 (74%), Gaps = 9/148 (6%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE++G C RFLQG TD +E++KIR A+ NG +YCGR+LNYKKDGTPFWN
Sbjct: 160 MTGYTSKEVVGRNC----RFLQGSGTDPHEIDKIRQALANGSNYCGRILNYKKDGTPFWN 215
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT+ PIKD+ G+ +KFIGMQVEVSKYTEG + +RPNGLS+SLI+YDARQK+ A S+
Sbjct: 216 LLTIAPIKDEDGRLLKFIGMQVEVSKYTEGKKETVVRPNGLSESLIKYDARQKDHARSSV 275
Query: 120 TEVIQTVKRSQSHIRALSLDTTNKLEEK 147
+E++ +K R+LS + N L+ K
Sbjct: 276 SELLLALKNP----RSLSESSNNTLKRK 299
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V KIRDA+ N +L+NY K G FWNL + P++D G FI
Sbjct: 451 RFLQGPETDRAIVRKIRDAIDNQAEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFI 510
Query: 78 GMQVEVSKYTEGVNDKA 94
G+Q++ TE V D A
Sbjct: 511 GVQLDG---TEHVQDDA 524
>gi|34224025|gb|AAQ63177.1| phototropin-like protein [Pisum sativum]
Length = 468
Score = 168 bits (425), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 88/145 (60%), Positives = 109/145 (75%), Gaps = 9/145 (6%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE+IG C R +QG +TD N+V KIR+AV G SYCGRLLNYKKDGT FWN
Sbjct: 188 MTGYTSKEVIGRNC----RSMQGADTDPNDVAKIREAVAAGTSYCGRLLNYKKDGTTFWN 243
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT+ PIKD+ GK +K IGMQVEVSK+TEG +K LRPNGL +SLIRYDARQKEKA S+
Sbjct: 244 LLTIAPIKDEHGKILKLIGMQVEVSKHTEGTKEKMLRPNGLPESLIRYDARQKEKANSSV 303
Query: 120 TEVIQTVKRSQSHIRALSLDTTNKL 144
TE+++ V + R+LS ++ N+L
Sbjct: 304 TELVEAVSK---RPRSLS-ESANRL 324
>gi|46518266|dbj|BAD16729.1| phototropin 2 [Adiantum capillus-veneris]
gi|46518268|dbj|BAD16730.1| phototropin 2 [Adiantum capillus-veneris]
Length = 1019
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/136 (59%), Positives = 105/136 (77%), Gaps = 5/136 (3%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ + KE+IG C RFLQG +TD ++VE+IR+++ GK+YCGRLLNYKKDGT FWN
Sbjct: 245 MTGYSSKEVIGRNC----RFLQGADTDPDDVERIRESLAEGKNYCGRLLNYKKDGTAFWN 300
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT+ PIKD+ G +KFIGMQVEVSK+TEG KALRPNGL +SLI+YDARQK++A+ +
Sbjct: 301 LLTIAPIKDEEGNVLKFIGMQVEVSKHTEGHKVKALRPNGLPESLIKYDARQKDRAVMDV 360
Query: 120 TEVIQTVKRSQSHIRA 135
+E+IQ VK + A
Sbjct: 361 SELIQAVKHPHHNGHA 376
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 72/124 (58%), Gaps = 6/124 (4%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
+++ T +E+IG C RFLQG +TD+ V+KIRDA+R + +LLNY K G FWN
Sbjct: 516 LTEYTREEIIGRNC----RFLQGQDTDQKTVQKIRDAIREQREITVQLLNYTKTGKRFWN 571
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDK-ALRPNGLSKSLIRYDARQKEKALGS 118
L + P++D G+ FIG+Q++ S+ E + + + + ++R A E+A+G
Sbjct: 572 LFHLQPMRDQKGELQYFIGVQLDGSEQLEPIQKRLSEKTEKEGAKIVRATALNVEEAVGE 631
Query: 119 ITEV 122
+ +
Sbjct: 632 LPDA 635
>gi|73760084|dbj|BAE20160.1| phototropin [Mougeotia scalaris]
gi|73760094|dbj|BAE20165.1| phototropin [Mougeotia scalaris]
Length = 839
Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 80/132 (60%), Positives = 105/132 (79%), Gaps = 5/132 (3%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ + KE+IG C RFLQGPETD++EVEK++ A+ +G+S+CGRLLNY+KDG+ FWN
Sbjct: 71 MTGYSAKEVIGKNC----RFLQGPETDRSEVEKLKQALLDGQSWCGRLLNYRKDGSSFWN 126
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLTV+P+KDDSG+ +KFIGMQVEVSK+TEG ND RPN L SLIRYD RQK++A +
Sbjct: 127 LLTVSPVKDDSGRVVKFIGMQVEVSKFTEGKNDDIKRPNQLPVSLIRYDDRQKDEAEVRV 186
Query: 120 TEVIQTVKRSQS 131
E++Q +K S+S
Sbjct: 187 EELLQDMKESES 198
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 55/89 (61%), Gaps = 5/89 (5%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
+++ T +E+IG C RFLQG +TDK V KIR A+ N + +LLNY K G PFWN
Sbjct: 314 LTEYTREEIIGRNC----RFLQGKDTDKETVAKIRHAIDNHQDITVQLLNYTKSGKPFWN 369
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTE 88
L + ++D G+ FIG+Q++ S Y E
Sbjct: 370 LFHLQAVRDTKGRLQYFIGVQLDASTYVE 398
>gi|357161363|ref|XP_003579067.1| PREDICTED: phototropin-1A-like [Brachypodium distachyon]
Length = 921
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 84/159 (52%), Positives = 109/159 (68%), Gaps = 20/159 (12%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE++G C RFLQG TD E+ KIR A+ +G +YCGR+LNYKKDGTPFWN
Sbjct: 157 MTGYTSKEVVGRNC----RFLQGSGTDPAEIAKIRQALADGSNYCGRVLNYKKDGTPFWN 212
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT+ PIKD+ G+ +KFIGMQVEVSKYTEG D +RPNGL +SLI+YDARQK++A S+
Sbjct: 213 LLTIAPIKDEDGRVLKFIGMQVEVSKYTEGSKDAVVRPNGLPESLIKYDARQKDQARSSV 272
Query: 120 TEVIQTVK---------------RSQSHIRALSLDTTNK 143
+E++ +K +SQ + AL+ D T K
Sbjct: 273 SELLLALKNPRSLSESSNSTFKRKSQESVGALTGDGTGK 311
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V KIRDA+ N +L+NY K G FWNL + P++D G FI
Sbjct: 448 RFLQGPETDRATVRKIRDAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFI 507
Query: 78 GMQVEVSKYTEGVNDKALR 96
G+Q++ TE V D A R
Sbjct: 508 GVQLDG---TEHVKDAAER 523
>gi|168067656|ref|XP_001785726.1| PHOTB2 phototropin B2 blue light photoreceptor [Physcomitrella
patens subsp. patens]
gi|50510317|dbj|BAD32625.1| phototropin [Physcomitrella patens]
gi|162662632|gb|EDQ49461.1| PHOTB2 phototropin B2 blue light photoreceptor [Physcomitrella
patens subsp. patens]
Length = 1171
Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats.
Identities = 85/156 (54%), Positives = 110/156 (70%), Gaps = 14/156 (8%)
Query: 1 MSDPTGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFW 58
M+ T KE+IG C RFLQGP TD +V +IRDA++ G+S+CGRLLNYKKDG+ FW
Sbjct: 372 MTGYTPKEVIGRNC-----RFLQGPGTDPEDVTRIRDALKEGRSFCGRLLNYKKDGSAFW 426
Query: 59 NLLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGS 118
NLLT+TPIKDD GK +KFIGMQVEVSK+TEG +KALRPNGL +SLIRYDAR + KA +
Sbjct: 427 NLLTITPIKDDDGKVLKFIGMQVEVSKHTEGKKEKALRPNGLPESLIRYDARLQVKATEA 486
Query: 119 ITEVIQTVKR-------SQSHIRALSLDTTNKLEEK 147
+ +++ K+ S +R L+ KL ++
Sbjct: 487 VGDLVGVFKKPTIPTSPRDSQLRKPLLEEEKKLAQQ 522
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 49/71 (69%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD+ V++IRDA+ + +LLNY K G PFWNL + ++D +G+ FI
Sbjct: 677 RFLQGPDTDRAVVDQIRDAIAARRDITVQLLNYTKSGKPFWNLFHLQAMRDHNGELQYFI 736
Query: 78 GMQVEVSKYTE 88
G+Q++ S+Y E
Sbjct: 737 GVQLDGSEYLE 747
>gi|168025773|ref|XP_001765408.1| PHOTA3 phototropin photoreceptor [Physcomitrella patens subsp.
patens]
gi|162683461|gb|EDQ69871.1| PHOTA3 phototropin photoreceptor [Physcomitrella patens subsp.
patens]
Length = 1069
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 71/116 (61%), Positives = 94/116 (81%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD+ V KIRDA++ G+++CGRLLNYKKDG+ FWNLL +TPI+ D G+ I +I
Sbjct: 301 RFLQGPQTDRTSVAKIRDALKQGRNFCGRLLNYKKDGSTFWNLLNLTPIRGDHGRVIMYI 360
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRSQSHI 133
GMQVEVSK+TEG +KALRPNGLS SLIRYD+RQ ++A S+TE++ ++S +
Sbjct: 361 GMQVEVSKFTEGSREKALRPNGLSASLIRYDSRQIDQATDSVTEIVGAFRKSSHSV 416
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 47/72 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPET+ V++IRD+V +GK +LLNY K G PFWNL + ++D G+ FI
Sbjct: 568 RFLQGPETNPETVKQIRDSVADGKDITVQLLNYTKSGKPFWNLFHLQTVRDHQGELQYFI 627
Query: 78 GMQVEVSKYTEG 89
G+Q+ Y+E
Sbjct: 628 GLQLNGRDYSEA 639
>gi|242082458|ref|XP_002441654.1| hypothetical protein SORBIDRAFT_08g000260 [Sorghum bicolor]
gi|241942347|gb|EES15492.1| hypothetical protein SORBIDRAFT_08g000260 [Sorghum bicolor]
Length = 913
Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/130 (61%), Positives = 97/130 (74%), Gaps = 4/130 (3%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD E+ KIR A+ G +YCGR+LNYKKDGTPFWNLLTV PIKD+ G+ +KFI
Sbjct: 165 RFLQGSGTDPVEISKIRQALAAGSNYCGRILNYKKDGTPFWNLLTVAPIKDEDGRVLKFI 224
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRSQSHIRALS 137
GMQVEVSKYTEG D ALRPNGL +SLI+YDARQK+ A S++E++ +K R+LS
Sbjct: 225 GMQVEVSKYTEGSKDTALRPNGLPESLIKYDARQKDHARSSVSELLLALKDP----RSLS 280
Query: 138 LDTTNKLEEK 147
N L+ K
Sbjct: 281 ESRNNTLKRK 290
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V+KIRDA+ N +L+NY K G FWNL + P++D G+ FI
Sbjct: 441 RFLQGPETDRGTVKKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFI 500
Query: 78 GMQVEVSKYTEGVNDKALR 96
G+Q++ TE V D A +
Sbjct: 501 GVQLDG---TERVRDTAAK 516
>gi|162457815|ref|NP_001104886.1| blue-light receptor phototropin 1 [Zea mays]
gi|2687358|gb|AAB88817.1| nonphototropic hypocotyl 1 [Zea mays]
Length = 911
Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/130 (61%), Positives = 97/130 (74%), Gaps = 4/130 (3%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD E+ KIR A+ G +YCGR+LNYKKDGTPFWNLLTV PIKD+ G+ +KFI
Sbjct: 165 RFLQGSGTDPVEISKIRQALAAGSNYCGRILNYKKDGTPFWNLLTVAPIKDEDGRVLKFI 224
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRSQSHIRALS 137
GMQVEVSKYTEG D ALRPNGL +SLI+YDARQK+ A S++E++ +K R+LS
Sbjct: 225 GMQVEVSKYTEGNKDTALRPNGLPESLIKYDARQKDHARSSVSELLLALKDP----RSLS 280
Query: 138 LDTTNKLEEK 147
N L+ K
Sbjct: 281 ESRNNTLKRK 290
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 43/65 (66%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V+KIRDA+ N +L+NY K G FWNL + P++D G FI
Sbjct: 439 RFLQGPETDRGTVKKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFI 498
Query: 78 GMQVE 82
G+Q++
Sbjct: 499 GVQLD 503
>gi|2754823|gb|AAC05083.1| NPH1-1 [Avena sativa]
Length = 923
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/148 (55%), Positives = 106/148 (71%), Gaps = 9/148 (6%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE++G C RFLQG TD E+ KIR A+ NG +YCGR+LNYKKDGT FWN
Sbjct: 160 MTGYTSKEVVGRNC----RFLQGSGTDPAEIAKIRQALANGSNYCGRVLNYKKDGTAFWN 215
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT+ PIKD+ G+ +KFIGMQVEVSKYTEG D +RPNGL +SLI+YDARQK++A S+
Sbjct: 216 LLTIAPIKDEEGRVLKFIGMQVEVSKYTEGNKDTVVRPNGLPESLIKYDARQKDQARSSV 275
Query: 120 TEVIQTVKRSQSHIRALSLDTTNKLEEK 147
+E++ +K R+LS T + + K
Sbjct: 276 SELLLAIKNP----RSLSESTNSTFKRK 299
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V KIRDA+ N +L+NY K G FWNL + P++D G FI
Sbjct: 451 RFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFI 510
Query: 78 GMQVEVSKYTEGVNDKALR 96
G+Q++ TE V D A R
Sbjct: 511 GVQLDG---TEHVRDAAER 526
>gi|414881997|tpg|DAA59128.1| TPA: blue-light receptor phototropin 1 [Zea mays]
Length = 761
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/130 (61%), Positives = 97/130 (74%), Gaps = 4/130 (3%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD E+ KIR A+ G +YCGR+LNYKKDGTPFWNLLTV PIKD+ G+ +KFI
Sbjct: 15 RFLQGSGTDPVEISKIRQALAAGSNYCGRILNYKKDGTPFWNLLTVAPIKDEDGRVLKFI 74
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRSQSHIRALS 137
GMQVEVSKYTEG D ALRPNGL +SLI+YDARQK+ A S++E++ +K R+LS
Sbjct: 75 GMQVEVSKYTEGNKDTALRPNGLPESLIKYDARQKDHARSSVSELLLALKDP----RSLS 130
Query: 138 LDTTNKLEEK 147
N L+ K
Sbjct: 131 ESRNNTLKRK 140
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 43/65 (66%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V+KIRDA+ N +L+NY K G FWNL + P++D G FI
Sbjct: 289 RFLQGPETDRGTVKKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFI 348
Query: 78 GMQVE 82
G+Q++
Sbjct: 349 GVQLD 353
>gi|2754825|gb|AAC05084.1| NPH1-2 [Avena sativa]
Length = 927
Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 82/148 (55%), Positives = 107/148 (72%), Gaps = 9/148 (6%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE++G C RFLQG TD E+ KIR A+ +G +YCGR+LNYKKDGT FWN
Sbjct: 163 MTGYTSKEVVGRNC----RFLQGSGTDPAEIAKIRQALADGSNYCGRVLNYKKDGTAFWN 218
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT+ PIKD+ G+ +KFIGMQVEVSKYTEG D A+RPNGL +SLI+YDARQK++A S+
Sbjct: 219 LLTIAPIKDEEGRVLKFIGMQVEVSKYTEGNKDTAVRPNGLPESLIKYDARQKDQARSSV 278
Query: 120 TEVIQTVKRSQSHIRALSLDTTNKLEEK 147
+E++ +K R+LS T + + K
Sbjct: 279 SELLLAIKNP----RSLSESTNSTFKRK 302
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V KIRDA+ N +L+NY K G FWNL + P++D G FI
Sbjct: 454 RFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFI 513
Query: 78 GMQVEVSKYTEGVNDKALR 96
G+Q++ TE V D A R
Sbjct: 514 GVQLDG---TEHVRDAAER 529
>gi|168021149|ref|XP_001763104.1| PHOTA4 phototropin blue light photoreceptor [Physcomitrella patens
subsp. patens]
gi|162685587|gb|EDQ71981.1| PHOTA4 phototropin blue light photoreceptor [Physcomitrella patens
subsp. patens]
Length = 868
Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 77/130 (59%), Positives = 104/130 (80%), Gaps = 5/130 (3%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE+IG C RFLQGPETDK ++ IR+A++ GK++CGRLLNYKKD + FWN
Sbjct: 64 MTGYTPKEIIGRSC----RFLQGPETDKADIASIREALQQGKNFCGRLLNYKKDRSAFWN 119
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT+TPIKDD+GK +K+IGMQVEVSK+T+G+ +KALRPNGL +SLIRYD R ++KA ++
Sbjct: 120 LLTMTPIKDDAGKVLKYIGMQVEVSKHTDGLKEKALRPNGLPESLIRYDVRLQDKAAEAV 179
Query: 120 TEVIQTVKRS 129
+++ +K S
Sbjct: 180 GDLVMALKNS 189
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 49/71 (69%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD+ V++IRDA+ + +LLNY K G PFWNL + ++D +G+ FI
Sbjct: 370 RFLQGPDTDRAVVDQIRDAIAARRDITVQLLNYTKSGKPFWNLFHLQSMRDHNGELQYFI 429
Query: 78 GMQVEVSKYTE 88
G+Q++ S+Y E
Sbjct: 430 GVQLDGSEYLE 440
>gi|326508020|dbj|BAJ86753.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 919
Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/132 (58%), Positives = 100/132 (75%), Gaps = 5/132 (3%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE++G C RFLQG TD E+ KIR A+ +G +YCGR+LNYKKDGT FWN
Sbjct: 156 MTGYTSKEVVGRNC----RFLQGSGTDPAEIAKIRQALADGSNYCGRVLNYKKDGTAFWN 211
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT+ PIKD+ G+ +KFIGMQVEVSKYTEG D +RPNGL +SLI+YDARQK++A S+
Sbjct: 212 LLTIAPIKDEDGRVLKFIGMQVEVSKYTEGNKDTVVRPNGLPESLIKYDARQKDQARSSV 271
Query: 120 TEVIQTVKRSQS 131
+E++ +K +S
Sbjct: 272 SELLLALKNPRS 283
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V KIRDA+ N +L+NY K G FWNL + P++D G FI
Sbjct: 447 RFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFI 506
Query: 78 GMQVEVSKYTEGVNDKA 94
G+Q++ TE V D A
Sbjct: 507 GVQLDG---TEHVRDAA 520
>gi|168027784|ref|XP_001766409.1| PHOTB1 phototropin B1 blue light photoreceptor [Physcomitrella
patens subsp. patens]
gi|50510315|dbj|BAD32624.1| phototropin [Physcomitrella patens]
gi|162682318|gb|EDQ68737.1| PHOTB1 phototropin B1 blue light photoreceptor [Physcomitrella
patens subsp. patens]
Length = 1133
Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats.
Identities = 78/129 (60%), Positives = 100/129 (77%), Gaps = 7/129 (5%)
Query: 1 MSDPTGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFW 58
M+ T KE+IG C RFLQG TD +V +IR+A++ GKS+CGRLLNYKKDG+ FW
Sbjct: 338 MTGYTPKEVIGRNC-----RFLQGAGTDNADVARIREALKEGKSFCGRLLNYKKDGSAFW 392
Query: 59 NLLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGS 118
NLLT+TPIKDD GK +KFIGMQVEVSK+TEG +K+LRPNGL +SLIRYDAR ++KA +
Sbjct: 393 NLLTITPIKDDDGKVLKFIGMQVEVSKHTEGKKEKSLRPNGLPESLIRYDARLQDKATAA 452
Query: 119 ITEVIQTVK 127
+ +++ K
Sbjct: 453 VGDLVGAFK 461
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 47/71 (66%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD V++IRDA+ + +LLNY K G PFWNL + ++D G+ FI
Sbjct: 643 RFLQGPDTDLAVVDQIRDAIAARRDITVQLLNYTKSGKPFWNLFHLQAMRDHDGELQYFI 702
Query: 78 GMQVEVSKYTE 88
G+Q++ S+Y E
Sbjct: 703 GVQLDGSEYLE 713
>gi|7804485|dbj|BAA95669.1| phototropin [Adiantum capillus-veneris]
Length = 1092
Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 74/128 (57%), Positives = 98/128 (76%), Gaps = 5/128 (3%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T E+IG C RFLQG ETD E+++IR+ + G YCGRLLNYKKDG+ FWN
Sbjct: 303 MTGYTSSEVIGRNC----RFLQGKETDPEEIDRIRECISKGSGYCGRLLNYKKDGSAFWN 358
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
LLT++PIKD G +K+IGMQVEVS++TEG + A+RPNGLS+SLI+YDARQKE+A +
Sbjct: 359 LLTISPIKDVDGSVLKYIGMQVEVSQFTEGTKENAMRPNGLSESLIKYDARQKERASFQV 418
Query: 120 TEVIQTVK 127
TE+++ +K
Sbjct: 419 TELVEAIK 426
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 47/71 (66%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T++ V+ IRDA+ N K +LLNY K G FWNL + P++D G+ F
Sbjct: 605 RFLQGPDTNRETVKLIRDAIDNEKEVTVQLLNYTKTGRTFWNLFHLQPMRDHKGELQYFT 664
Query: 78 GMQVEVSKYTE 88
G+Q++ ++Y E
Sbjct: 665 GVQLDGTEYLE 675
>gi|194709097|pdb|2Z6D|A Chain A, Crystal Structure Of Lov1 Domain Of Phototropin2 From
Arabidopsis Thaliana
gi|194709098|pdb|2Z6D|B Chain B, Crystal Structure Of Lov1 Domain Of Phototropin2 From
Arabidopsis Thaliana
Length = 130
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/95 (78%), Positives = 81/95 (85%), Gaps = 7/95 (7%)
Query: 1 MSDPTGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFW 58
M+ + KE++G C RFLQGP+TDKNEV KIRD V+NGKSYCGRLLNYKKDGTPFW
Sbjct: 41 MTGYSSKEIVGRNC-----RFLQGPDTDKNEVAKIRDCVKNGKSYCGRLLNYKKDGTPFW 95
Query: 59 NLLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDK 93
NLLTVTPIKDD G TIKFIGMQVEVSKYTEGVNDK
Sbjct: 96 NLLTVTPIKDDQGNTIKFIGMQVEVSKYTEGVNDK 130
>gi|302802410|ref|XP_002982959.1| hypothetical protein SELMODRAFT_10296 [Selaginella moellendorffii]
gi|300149112|gb|EFJ15768.1| hypothetical protein SELMODRAFT_10296 [Selaginella moellendorffii]
Length = 824
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/114 (64%), Positives = 91/114 (79%), Gaps = 5/114 (4%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE+IG C RFLQG ETD +V KIR A+ GKS+CGRLLNYKK+GTPFWN
Sbjct: 105 MTGYTAKEVIGRNC----RFLQGTETDPADVSKIRVALEQGKSFCGRLLNYKKNGTPFWN 160
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKE 113
LLT+ PIKD+ GK +K+IGM VEVS++TEG DKA+RPNG+ +SLI+YDARQK+
Sbjct: 161 LLTIAPIKDEDGKVLKYIGMLVEVSQFTEGSKDKAVRPNGMPESLIKYDARQKD 214
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 52/73 (71%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T++ V +IR A+R+ +S +LLNY K G PFWNL + P++D+ G+ FI
Sbjct: 359 RFLQGPDTNQETVTRIRYAIRDQRSITVQLLNYTKRGKPFWNLFHLQPMRDNKGELQYFI 418
Query: 78 GMQVEVSKYTEGV 90
G+Q++ S++ + V
Sbjct: 419 GVQLDGSQHFDKV 431
>gi|302764126|ref|XP_002965484.1| hypothetical protein SELMODRAFT_230655 [Selaginella moellendorffii]
gi|300166298|gb|EFJ32904.1| hypothetical protein SELMODRAFT_230655 [Selaginella moellendorffii]
Length = 952
Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/136 (59%), Positives = 102/136 (75%), Gaps = 8/136 (5%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE+IG C RFLQG ETD +V KIR A+ GKS+CGRLLNYKK+GTPFWN
Sbjct: 218 MTGYTAKEVIGRNC----RFLQGTETDPVDVSKIRVALEQGKSFCGRLLNYKKNGTPFWN 273
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKE---KAL 116
LLT+ PIKD+ GK +K+IGM VEVS++TEG DKA+RPNG+ +SLI+YDARQK+ ++
Sbjct: 274 LLTIAPIKDEDGKVLKYIGMLVEVSQFTEGSKDKAVRPNGMPESLIKYDARQKDSVVSSV 333
Query: 117 GSITEVIQTVKRSQSH 132
+ EV T KR QS+
Sbjct: 334 SELVEVFSTSKRDQSN 349
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 52/73 (71%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T++ V +IR A+R+ KS +LLNY K G PFWNL + P++D+ G+ FI
Sbjct: 472 RFLQGPDTNQETVTRIRYAIRDQKSITVQLLNYTKRGKPFWNLFHLQPMRDNKGELQYFI 531
Query: 78 GMQVEVSKYTEGV 90
G+Q++ S++ + V
Sbjct: 532 GVQLDGSQHFDKV 544
>gi|73760086|dbj|BAE20161.1| phototropin [Mougeotia scalaris]
gi|73760096|dbj|BAE20166.1| phototropin [Mougeotia scalaris]
Length = 803
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/124 (54%), Positives = 89/124 (71%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG T ++EV +++ + G+ +CGRLLNY+KDGTPFWNLLTV+P++ +GK +KFI
Sbjct: 72 RFLQGEGTSRDEVTRLKQCLVEGQPFCGRLLNYRKDGTPFWNLLTVSPVRSATGKVVKFI 131
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRSQSHIRALS 137
GMQ EVSK+TEG D RPN L SLIRYDARQK++A S+TE++ V + I LS
Sbjct: 132 GMQTEVSKFTEGAADGIKRPNDLPVSLIRYDARQKDEAEVSVTEIVHAVAHPEKAIARLS 191
Query: 138 LDTT 141
T
Sbjct: 192 TAVT 195
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 50/71 (70%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD++ V+KIRDA+R+ + +LLNY K G PFWN+ + +K+ G+ FI
Sbjct: 302 RFLQGPDTDQDTVQKIRDAIRDCRDVTVQLLNYTKSGKPFWNMFHLQAVKNSKGELQYFI 361
Query: 78 GMQVEVSKYTE 88
G+Q++ S Y E
Sbjct: 362 GVQLDASTYIE 372
>gi|168005245|ref|XP_001755321.1| PHOTB3 phototropin blue light photoreceptor [Physcomitrella patens
subsp. patens]
gi|162693449|gb|EDQ79801.1| PHOTB3 phototropin blue light photoreceptor [Physcomitrella patens
subsp. patens]
Length = 732
Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 71/130 (54%), Positives = 97/130 (74%), Gaps = 5/130 (3%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD EVEKIR ++ GK +CGRLLNY+K+ TPFWN+LT+TPIKD++ + IK I
Sbjct: 56 RFLQGPDTDPKEVEKIRHGLKAGKPFCGRLLNYRKNRTPFWNILTITPIKDENDRVIKCI 115
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRSQSHIRAL- 136
GMQVE+SKYTEGV A PNGL +SLIRYD E A S+T++++ +K+ S ++L
Sbjct: 116 GMQVEMSKYTEGVKSVARCPNGLPESLIRYD----EMATESVTQLVKVLKKPLSEFQSLV 171
Query: 137 SLDTTNKLEE 146
+ + +L+E
Sbjct: 172 GIGKSQRLQE 181
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 48/73 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + D+N V++IRD++R + +LLNY K G PFWNL + ++D G+ FI
Sbjct: 265 RFLQGRDKDQNTVQQIRDSIRENRDITVQLLNYTKSGKPFWNLFHLQAMRDQKGELQYFI 324
Query: 78 GMQVEVSKYTEGV 90
G+Q++ S Y +G
Sbjct: 325 GVQLDSSLYVDGA 337
>gi|226374632|gb|ACO52468.1| neochrome [Allantodia dilatata]
Length = 1425
Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats.
Identities = 67/128 (52%), Positives = 91/128 (71%), Gaps = 9/128 (7%)
Query: 5 TGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAV--RNGKSYCGRLLNYKKDGTPFWNL 60
T +E+IG C RFLQGP+TD ++ IRDAV + ++CGRLLNY+KDG+ FWNL
Sbjct: 686 TSREVIGGNC-----RFLQGPDTDPEDIASIRDAVVPQGTGTFCGRLLNYRKDGSNFWNL 740
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
LT+ PIKDDSG +KFIG+Q+EVSKYTEG LRPNGL +SLI+YD R ++K +
Sbjct: 741 LTIAPIKDDSGTIVKFIGVQLEVSKYTEGSRANRLRPNGLPQSLIKYDVRHQDKVSALVA 800
Query: 121 EVIQTVKR 128
+++ + +
Sbjct: 801 QLVAALTK 808
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 41/65 (63%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD+ V+ IRDAV+ G+ +LLNY + PFWNL + ++D G FI
Sbjct: 964 RFLQGRDTDRKAVQLIRDAVKEGRDVTVQLLNYTRSRRPFWNLFHLQAMRDKKGNLQYFI 1023
Query: 78 GMQVE 82
G+Q E
Sbjct: 1024 GVQQE 1028
>gi|253750646|gb|ACT35019.1| phytochrome 3 [Pronephrium lakhimpurense]
Length = 1438
Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats.
Identities = 65/128 (50%), Positives = 92/128 (71%), Gaps = 9/128 (7%)
Query: 5 TGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAV--RNGKSYCGRLLNYKKDGTPFWNL 60
T +E+IG C RFLQGPET+ ++ IR+A+ + G ++CGRLLNY+KDG+ FWNL
Sbjct: 699 TSREVIGGNC-----RFLQGPETNPEDIASIREALVPQGGGTFCGRLLNYRKDGSSFWNL 753
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
LT+ PIKDDSG +K IG+Q+EVSKYTEG LRPNGL +SLI+YD R ++K ++
Sbjct: 754 LTIAPIKDDSGTIVKLIGVQLEVSKYTEGSRANRLRPNGLPQSLIKYDVRHQDKVSALVS 813
Query: 121 EVIQTVKR 128
+++ + +
Sbjct: 814 QLVAALTK 821
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 38/65 (58%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQG +TD V+ IRDAV G+ LLNY + G PFWNL + ++D G FI
Sbjct: 977 RLLQGQDTDPKAVQLIRDAVEGGRDVTVHLLNYTRSGRPFWNLFHLQAMRDKKGNLQYFI 1036
Query: 78 GMQVE 82
G+Q E
Sbjct: 1037 GVQQE 1041
>gi|27807561|dbj|BAC55265.1| phytochrome 3 [Dryopteris filix-mas]
Length = 686
Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats.
Identities = 65/128 (50%), Positives = 90/128 (70%), Gaps = 9/128 (7%)
Query: 5 TGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAV--RNGKSYCGRLLNYKKDGTPFWNL 60
T +E+IG C RFLQGP+T+ +V IRDAV R ++CGRLLNY+KDG+ FWNL
Sbjct: 258 TSREVIGGNC-----RFLQGPDTNPEDVASIRDAVVPRGTGTFCGRLLNYRKDGSNFWNL 312
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
LT+ PIKDD+G +K +G+Q+EVSKYTEG LRPNGL +SLI+YD R ++K +
Sbjct: 313 LTIAPIKDDTGTIVKLVGVQLEVSKYTEGSRANRLRPNGLPQSLIKYDVRHQDKVSALVA 372
Query: 121 EVIQTVKR 128
+++ + +
Sbjct: 373 QIVAALTK 380
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/77 (42%), Positives = 44/77 (57%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD V+ IRDAV+ G+ +LLNY + G PFWNL + ++D G FI
Sbjct: 536 RFLQGRDTDLKAVQLIRDAVKEGRDITVQLLNYTRGGRPFWNLFHLQAMRDKKGNLQYFI 595
Query: 78 GMQVEVSKYTEGVNDKA 94
G+Q E +KA
Sbjct: 596 GVQQETDTLDRVEQEKA 612
>gi|19570333|dbj|BAA36192.2| PHY3 [Adiantum capillus-veneris]
Length = 1465
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 64/127 (50%), Positives = 89/127 (70%), Gaps = 8/127 (6%)
Query: 5 TGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGK-SYCGRLLNYKKDGTPFWNLL 61
T +E+IG C RFLQGP+T+ +V IR+A+ G ++CGRLLNY+KDG+ FWNLL
Sbjct: 703 TSREVIGGNC-----RFLQGPDTNPADVASIREALAQGTGTFCGRLLNYRKDGSSFWNLL 757
Query: 62 TVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITE 121
T+ PIKDD G +K IG+Q+EVSKYTEG+ RPNG+ +SLIRYD R ++K I +
Sbjct: 758 TIAPIKDDLGSIVKLIGVQLEVSKYTEGIRANNRRPNGMPQSLIRYDVRHQDKVSAFIAQ 817
Query: 122 VIQTVKR 128
++ + +
Sbjct: 818 LVAALTK 824
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD+ V+ IRDAV+ + ++LNY K G FWNL + ++D++G FI
Sbjct: 967 RFLQGRGTDRKAVQLIRDAVKEQRDVTVQVLNYTKGGRAFWNLFHLQVMRDENGDVQYFI 1026
Query: 78 GMQVEV 83
G+Q E+
Sbjct: 1027 GVQQEM 1032
>gi|253750644|gb|ACT35018.1| phytochrome 3 [Plagiogyria distinctissima]
Length = 1435
Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 63/122 (51%), Positives = 87/122 (71%), Gaps = 6/122 (4%)
Query: 9 LIGCCLLCSRFLQGPETDKNEVEKIRDAV--RNGKSYCGRLLNYKKDGTPFWNLLTVTPI 66
L G C RFLQGP+T+ +V IR+A+ + ++CGRLLNY+KDG+ FWNLLT+ PI
Sbjct: 698 LAGNC----RFLQGPDTNPADVASIREALAPQGTGTFCGRLLNYRKDGSNFWNLLTIAPI 753
Query: 67 KDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTV 126
KDDSG +KFIG+Q+EVSKYTEG LRPNGL +SLI+YD R ++K + +++ +
Sbjct: 754 KDDSGTIVKFIGVQLEVSKYTEGSRANRLRPNGLPQSLIKYDVRHQDKVSALVAQLVAAL 813
Query: 127 KR 128
+
Sbjct: 814 TK 815
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 39/65 (60%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD V+ IRDAV+ G LLNY + G PFWNL + ++D G FI
Sbjct: 974 RFLQGRDTDLKAVQLIRDAVKEGHDVTVHLLNYTRSGRPFWNLFHLQAMRDKKGNLQYFI 1033
Query: 78 GMQVE 82
G+Q E
Sbjct: 1034 GVQQE 1038
>gi|27807565|dbj|BAC55267.1| phytochrome 3 [Onoclea sensibilis]
Length = 692
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/128 (50%), Positives = 90/128 (70%), Gaps = 5/128 (3%)
Query: 5 TGKELIGCCLLCSRFLQGPETDKNEVEKIRDAV--RNGKSYCGRLLNYKKDGTPFWNLLT 62
T +E+IG C RFLQGPET+ ++ IR+A+ + ++CGRLLNY+KDG+ FWNLLT
Sbjct: 263 TSREVIGGN--C-RFLQGPETNPAVIDSIREALVPQGTGTFCGRLLNYRKDGSSFWNLLT 319
Query: 63 VTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEV 122
+ PIKDDSG + IG+Q+EVSKYTEG + LRPNGL +SLI+YD R ++K I ++
Sbjct: 320 IAPIKDDSGTIVNLIGVQLEVSKYTEGSRENRLRPNGLPQSLIKYDVRHQDKVSALIAQL 379
Query: 123 IQTVKRSQ 130
+ + +
Sbjct: 380 VAALTKPH 387
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 45/77 (58%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD+ V+ IRDAV G+ +LLNY K G PFWNL + ++D G FI
Sbjct: 542 RFLQGRDTDRKAVQLIRDAVEEGRDVTVQLLNYTKGGRPFWNLFHLQAMRDKKGNLQYFI 601
Query: 78 GMQVEVSKYTEGVNDKA 94
G+Q E ++KA
Sbjct: 602 GVQQETDTPDRVEHEKA 618
>gi|449525938|ref|XP_004169973.1| PREDICTED: phototropin-2-like [Cucumis sativus]
Length = 876
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/133 (52%), Positives = 87/133 (65%), Gaps = 14/133 (10%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETDKNEV KIR A+R G SYCG+LLNYKK+GTPFWNLLTV P+KD G+ I+FI
Sbjct: 165 RFLQGPETDKNEVAKIRHAIRKGNSYCGKLLNYKKNGTPFWNLLTVGPVKDSHGRIIRFI 224
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRSQSHIRALS 137
GMQVE++K EG+ K + Q E+A+ SI EV VK +SH
Sbjct: 225 GMQVEIAKDIEGM-----------KKSMSITEVQAERAIRSIVEV-DIVKSLRSHWH--D 270
Query: 138 LDTTNKLEEKRSS 150
DT ++ EK ++
Sbjct: 271 ADTKHQEPEKTNA 283
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDD-SGKTIKFI 77
FLQGPETD+ V KI DA+ + +++NY K G F NL + P+ D G+ FI
Sbjct: 396 FLQGPETDQATVSKINDAIEEQREITLQIINYTKSGKKFSNLFHLQPMCDQMKGELQYFI 455
Query: 78 GMQVE 82
G+Q+
Sbjct: 456 GVQIH 460
>gi|449453764|ref|XP_004144626.1| PREDICTED: phototropin-2-like [Cucumis sativus]
Length = 943
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/133 (52%), Positives = 87/133 (65%), Gaps = 14/133 (10%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETDKNEV KIR A+R G SYCG+LLNYKK+GTPFWNLLTV P+KD G+ I+FI
Sbjct: 232 RFLQGPETDKNEVAKIRHAIRKGNSYCGKLLNYKKNGTPFWNLLTVGPVKDSHGRIIRFI 291
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRSQSHIRALS 137
GMQVE++K EG+ K + Q E+A+ SI EV VK +SH
Sbjct: 292 GMQVEIAKDIEGM-----------KKSMSITEVQAERAIRSIVEV-DIVKSLRSHWH--D 337
Query: 138 LDTTNKLEEKRSS 150
DT ++ EK ++
Sbjct: 338 ADTKHQEPEKTNA 350
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDD-SGKTIKFI 77
FLQGPETD+ V KI DA+ + +++NY K G F NL + P+ D G+ FI
Sbjct: 463 FLQGPETDQATVSKINDAIEEQREITLQIINYTKSGKKFSNLFHLQPMCDQMKGELQYFI 522
Query: 78 GMQVE 82
G+Q+
Sbjct: 523 GVQIH 527
>gi|253750642|gb|ACT35017.1| phytochrome 3 [Coniogramme intermedia var. glabra]
Length = 1443
Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats.
Identities = 60/128 (46%), Positives = 88/128 (68%), Gaps = 9/128 (7%)
Query: 5 TGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAV--RNGKSYCGRLLNYKKDGTPFWNL 60
+ +E+IG C RFLQGP+T+ + IR A+ + ++CGRLLNY+KDG+ FWNL
Sbjct: 703 SAREVIGGNC-----RFLQGPDTNPAVIASIRQALAPQGTGTFCGRLLNYRKDGSNFWNL 757
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
LT+ PIKDDSG +K +G+Q+EVSKYTEG + LRPN L +SLI+YD R ++K +
Sbjct: 758 LTIAPIKDDSGTIVKLVGVQLEVSKYTEGYREDKLRPNRLPQSLIKYDVRHQDKVSALVG 817
Query: 121 EVIQTVKR 128
+++ + +
Sbjct: 818 QLVAALTK 825
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 43/65 (66%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD+ V+ IRDAV+ G+ +LLNYK+ G PFWNL + +KD G FI
Sbjct: 983 RFLQGRDTDRKAVQLIRDAVKEGRDMTVQLLNYKRSGKPFWNLFHLQAMKDKKGNLQYFI 1042
Query: 78 GMQVE 82
G+Q E
Sbjct: 1043 GVQEE 1047
>gi|27807563|dbj|BAC55266.1| phytochrome 3 [Hypolepis punctata]
Length = 657
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 87/125 (69%), Gaps = 4/125 (3%)
Query: 5 TGKELIGCCLLCSRFLQGPETDKNEVEKIRDAV-RNGKSYCGRLLNYKKDGTPFWNLLTV 63
T E+IG C R LQGP+T+ +V IR+A+ ++ ++C +LLNY+KDG+ FWNLLT+
Sbjct: 248 TSTEVIGAN--C-RLLQGPDTNPEDVASIREALAQDTGTFCRKLLNYRKDGSSFWNLLTI 304
Query: 64 TPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVI 123
PIKDD G +K IG+Q+EVSKYTEG LRPNGL +SLI+YD R ++K + E++
Sbjct: 305 APIKDDRGSIVKLIGVQLEVSKYTEGSRANRLRPNGLPQSLIKYDVRHRDKVSVFVAELV 364
Query: 124 QTVKR 128
+ +
Sbjct: 365 AALTK 369
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 16 CSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIK 75
CS FLQG +TD N V+ IRDAV + +LLNY + G PFWNL + ++D+ G+
Sbjct: 508 CS-FLQGRDTDANTVQLIRDAVAEQRDVTVQLLNYTRGGRPFWNLFHLHAMRDEKGELQY 566
Query: 76 FIGMQVE 82
FIG+Q E
Sbjct: 567 FIGVQQE 573
>gi|149286422|gb|ABR23226.1| hisactophilin C49S mutant/hisactophilin/phototropin PHY3 fusion
protein [Expression vector
pNCO-HISACT-(C49S)-ASLOV1-syn]
Length = 245
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/89 (64%), Positives = 68/89 (76%), Gaps = 5/89 (5%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE++G C RFLQG TD E+ KIR A+ NG +YCGR+LNYKKDGT FWN
Sbjct: 161 MTGYTSKEVVGRNC----RFLQGSGTDPAEIAKIRQALANGSNYCGRVLNYKKDGTAFWN 216
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTE 88
LLT+ PIKD+ G+ +KFIGMQVEVSKYTE
Sbjct: 217 LLTIAPIKDEEGRVLKFIGMQVEVSKYTE 245
>gi|457711|emb|CAA82993.1| protein kinase [Spinacia oleracea]
Length = 724
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 70/88 (79%), Gaps = 4/88 (4%)
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
LTVTPI+DD G IKFIGMQVEVSK+TEG+NDKALRPNGL KSLIRYD RQKE ALGSI
Sbjct: 1 LTVTPIRDDKGCVIKFIGMQVEVSKFTEGINDKALRPNGLPKSLIRYDPRQKEAALGSII 60
Query: 121 EVIQTVKRSQSHIRALSLDTTNKLEEKR 148
EV+QTVK H R+LS +N ++R
Sbjct: 61 EVVQTVK----HPRSLSQPLSNNDADRR 84
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 51/76 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V+KIRDA++ + +L+NY K G FWNL + P++D G+ FI
Sbjct: 241 RFLQGPETDQTTVQKIRDAIKEQRDITVQLINYTKSGRKFWNLFHLQPMRDQKGELQYFI 300
Query: 78 GMQVEVSKYTEGVNDK 93
G+Q++ S + E + ++
Sbjct: 301 GVQLDGSDHVEPLRNR 316
>gi|307103015|gb|EFN51280.1| hypothetical protein CHLNCDRAFT_141214 [Chlorella variabilis]
Length = 796
Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 67/150 (44%), Positives = 91/150 (60%), Gaps = 17/150 (11%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD +V+K+RDAVRNG C RLLNY+KDGTPFWNLLT+TPIKD+ G+ IKF+
Sbjct: 76 RFLQGEGTDPKDVKKLRDAVRNGTPVCTRLLNYRKDGTPFWNLLTMTPIKDEMGRVIKFV 135
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT-EVIQTVKRSQSHI--- 133
G+QV+V+ TEG +A + L+ YD R KE I +V+ V+ + +
Sbjct: 136 GVQVDVTNKTEG---RAYTDSAGVPMLVHYDDRLKETVAKPIVDDVLTAVQEADGKVPVR 192
Query: 134 -------RAL---SLDTTNKLEEKRSSILI 153
RAL +LD +E +S+ +I
Sbjct: 193 LSRGSPSRALPRVALDLATTVERIQSNFVI 222
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 49/74 (66%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD+ V +++ A+R G+ R+LNY K G PFWN+LTV PIKD + +
Sbjct: 256 RFLQGRDTDRATVNELKAAIRAGRECTVRMLNYTKAGKPFWNMLTVAPIKDIEERPRFLV 315
Query: 78 GMQVEVSKYTEGVN 91
G+QV+V+++ +
Sbjct: 316 GVQVDVTEHATATD 329
>gi|194709095|pdb|2Z6C|A Chain A, Crystal Structure Of Lov1 Domain Of Phototropin1 From
Arabidopsis Thaliana
gi|194709096|pdb|2Z6C|B Chain B, Crystal Structure Of Lov1 Domain Of Phototropin1 From
Arabidopsis Thaliana
Length = 129
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 57/92 (61%), Positives = 70/92 (76%), Gaps = 7/92 (7%)
Query: 1 MSDPTGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFW 58
M+ T KE++G C RFLQG TD +E+ KIR+ + G +YCGR+LNYKKDGT FW
Sbjct: 42 MTGYTSKEVVGRNC-----RFLQGSGTDADELAKIRETLAAGNNYCGRILNYKKDGTSFW 96
Query: 59 NLLTVTPIKDDSGKTIKFIGMQVEVSKYTEGV 90
NLLT+ PIKD+SGK +KFIGMQVEVSK+TEG
Sbjct: 97 NLLTIAPIKDESGKVLKFIGMQVEVSKHTEGA 128
>gi|159470479|ref|XP_001693387.1| phototropin [Chlamydomonas reinhardtii]
gi|158277645|gb|EDP03413.1| phototropin [Chlamydomonas reinhardtii]
Length = 750
Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats.
Identities = 55/104 (52%), Positives = 72/104 (69%), Gaps = 3/104 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD EV+KIRDA++ G++ RLLNY+KDGTPFWNLLTVTPIK G+ KF+
Sbjct: 58 RFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPFWNLLTVTPIKTPDGRVSKFV 117
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITE 121
G+QV+V+ TEG KAL N L++YD R ++ +I +
Sbjct: 118 GVQVDVTSKTEG---KALADNSGVPLLVKYDHRLRDNVARTIVD 158
Score = 72.4 bits (176), Expect = 7e-11, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 44/67 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD+ V++IR A++ G R+LNY K G FWN+ T+ P++D G F+
Sbjct: 251 RFLQGAGTDRGTVDQIRAAIKEGSELTVRILNYTKAGKAFWNMFTLAPMRDQDGHARFFV 310
Query: 78 GMQVEVS 84
G+QV+V+
Sbjct: 311 GVQVDVT 317
>gi|20797092|emb|CAC94940.1| putative blue light receptor [Chlamydomonas reinhardtii]
Length = 750
Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats.
Identities = 55/104 (52%), Positives = 72/104 (69%), Gaps = 3/104 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD EV+KIRDA++ G++ RLLNY+KDGTPFWNLLTVTPIK G+ KF+
Sbjct: 58 RFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPFWNLLTVTPIKTPDGRVSKFV 117
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITE 121
G+QV+V+ TEG KAL N L++YD R ++ +I +
Sbjct: 118 GVQVDVTSKTEG---KALADNSGVPLLVKYDHRLRDNVARTIVD 158
Score = 72.4 bits (176), Expect = 7e-11, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 44/67 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD+ V++IR A++ G R+LNY K G FWN+ T+ P++D G F+
Sbjct: 251 RFLQGAGTDRGTVDQIRAAIKEGSELTVRILNYTKAGKAFWNMFTLAPMRDQDGHARFFV 310
Query: 78 GMQVEVS 84
G+QV+V+
Sbjct: 311 GVQVDVT 317
>gi|20797097|emb|CAC94941.1| putative blue light receptor [Chlamydomonas reinhardtii]
Length = 749
Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats.
Identities = 55/104 (52%), Positives = 72/104 (69%), Gaps = 3/104 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD EV+KIRDA++ G++ RLLNY+KDGTPFWNLLTVTPIK G+ KF+
Sbjct: 58 RFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPFWNLLTVTPIKTPDGRVSKFV 117
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITE 121
G+QV+V+ TEG KAL N L++YD R ++ +I +
Sbjct: 118 GVQVDVTSKTEG---KALADNSGVPLLVKYDHRLRDNVARTIVD 158
Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 44/67 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD+ V++IR A++ G R+LNY K G FWN+ T+ P++D G F+
Sbjct: 251 RFLQGAGTDRGTVDQIRAAIKEGSELTVRILNYTKAGKAFWNMFTLAPMRDQDGHARFFV 310
Query: 78 GMQVEVS 84
G+QV+V+
Sbjct: 311 GVQVDVT 317
>gi|302837812|ref|XP_002950465.1| phototropin [Volvox carteri f. nagariensis]
gi|300264470|gb|EFJ48666.1| phototropin [Volvox carteri f. nagariensis]
Length = 744
Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats.
Identities = 56/104 (53%), Positives = 71/104 (68%), Gaps = 3/104 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD EV+KIR+A++ G++ RLLNY+KDGTPFWNLLTVTPIK GK KF+
Sbjct: 58 RFLQGEGTDPKEVQKIREAIKKGEACSVRLLNYRKDGTPFWNLLTVTPIKTPDGKVSKFV 117
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITE 121
G+QV+V+ TEG KAL N L++YD R +E I +
Sbjct: 118 GVQVDVTSKTEG---KALADNSGVPLLVKYDHRLRENVAKKIVD 158
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/67 (49%), Positives = 46/67 (68%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD V++IR+A+R G R+LNY K G PFWN+ T+ P++D G F+
Sbjct: 252 RFLQGPGTDSATVDQIREAIRTGTEITVRILNYTKQGRPFWNMFTMAPMRDQDGSVRFFV 311
Query: 78 GMQVEVS 84
G+QV+V+
Sbjct: 312 GVQVDVT 318
>gi|412985223|emb|CCO20248.1| phototropin [Bathycoccus prasinos]
Length = 888
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 86/145 (59%), Gaps = 1/145 (0%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD V+K+RDAV+ G+ RLLNY+KDGTPFWN LT+ P+K G +K+I
Sbjct: 115 RFLQGKDTDPESVKKLRDAVKAGERVSVRLLNYRKDGTPFWNYLTIAPVKLADGTVVKYI 174
Query: 78 GMQVEVSKYTEG-VNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRSQSHIRAL 136
G+QV+V+ TEG V L+ N L+RYDAR + LG+ TEV + V + +
Sbjct: 175 GVQVDVTDKTEGNVAPSVLKDNDGFPLLVRYDARLAAQNLGAFTEVEEAVLSATGLKSSK 234
Query: 137 SLDTTNKLEEKRSSILIVLCLHLLK 161
S D + RS + + L ++
Sbjct: 235 SFDDDQQALTSRSGMDMASTLERIQ 259
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 62/102 (60%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD+N V+ IRDA+ G RLLNY K+G PFWN+ T+ P++DD GK F
Sbjct: 298 RFLQGKDTDQNSVKAIRDAIDAGSEVTVRLLNYTKNGRPFWNMFTLAPVRDDEGKVRFFA 357
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
G+QV+V+ Y + ++ + +++ R +KA +I
Sbjct: 358 GVQVDVTVYDDDGTERTVASFDKTETAEREQEEYSKKAASNI 399
>gi|303288491|ref|XP_003063534.1| phototropin, blue light receptor [Micromonas pusilla CCMP1545]
gi|226455366|gb|EEH52670.1| phototropin, blue light receptor [Micromonas pusilla CCMP1545]
Length = 819
Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats.
Identities = 61/152 (40%), Positives = 89/152 (58%), Gaps = 16/152 (10%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD+++V+KIRDAV+ G+ RL NYKKDGTPFWNLLT+ P+K + G KFI
Sbjct: 83 RFLQGEDTDRDDVQKIRDAVQKGERLTIRLQNYKKDGTPFWNLLTIAPVKMEDGTVAKFI 142
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKS--------LIRYDARQKEKALGSITEVIQTVKRS 129
G+QV+V+ TEG + + G+ + L+RYD R K++ + +V + V +
Sbjct: 143 GVQVDVTDRTEGEVGRTVGDGGVVGAKDEKGLPLLVRYDQRLKDQNYPGVEDVEKAVMKG 202
Query: 130 QS-------HIRALS-LDTTNKLEEKRSSILI 153
+ + RA LD +E + S LI
Sbjct: 203 EGIDADATRNSRAREGLDMATTMERIQQSFLI 234
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 52/72 (72%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD++ V++IR+A+++ + RLLNY K G PFWN+ T+ P++D +G+ F
Sbjct: 268 RFLQGAGTDRDAVKEIRNAIKDNRECTVRLLNYTKQGKPFWNMFTLAPVRDHAGEVRFFA 327
Query: 78 GMQVEVSKYTEG 89
G+QV+V+ YT+
Sbjct: 328 GVQVDVTVYTDA 339
>gi|129560444|dbj|BAF48778.1| LOV domain-containing protein [Marchantia polymorpha]
gi|129560446|dbj|BAF48779.1| LOV domain-containing protein [Marchantia polymorpha]
Length = 712
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 70/102 (68%), Gaps = 9/102 (8%)
Query: 1 MSDPTGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFW 58
M+ T KE++G C RFLQG TD +++ IR A+R G Y G+LLNYKKDG+PFW
Sbjct: 310 MTGYTAKEVVGRNC-----RFLQGQYTDAHDIAMIRGALREGNIYTGKLLNYKKDGSPFW 364
Query: 59 NLLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGL 100
NLLT++PI+DD G+ IK+IGMQ EV++ KAL NG+
Sbjct: 365 NLLTISPIRDDGGRLIKYIGMQAEVTE--SAAIGKALDQNGV 404
>gi|308812864|ref|XP_003083739.1| putative blue light receptor (ISS) [Ostreococcus tauri]
gi|116055620|emb|CAL58288.1| putative blue light receptor (ISS) [Ostreococcus tauri]
Length = 738
Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats.
Identities = 54/142 (38%), Positives = 85/142 (59%), Gaps = 6/142 (4%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +T+KN+V ++R+A++NG + RLLNYKKDGTPFWN L V P+K G +K+I
Sbjct: 67 RFLQGEKTNKNDVRELREAIKNGDRWSVRLLNYKKDGTPFWNYLVVAPVKLADGTVVKYI 126
Query: 78 GMQVEVSKYTEG-VNDKALRPNGLSKSL-IRYDARQKEKALGSITEVIQTVKRSQ----S 131
G+Q +V++ + ++ + + + + RYDAR LG ++EV Q V+ ++
Sbjct: 127 GVQTDVTEVKDADTGERGIEFDEKGQPVPSRYDARAAAATLGRVSEVEQAVRTAEGLGNQ 186
Query: 132 HIRALSLDTTNKLEEKRSSILI 153
R +D + LE S +I
Sbjct: 187 AQRRTGMDLASTLERIEQSFVI 208
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 48/69 (69%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD+ V KIR+A+ NG+ RLLNY K G FWN+ T+ P++D+ G F
Sbjct: 242 RFLQGPKTDRAAVAKIREAIENGEECTVRLLNYTKTGEEFWNMFTLAPVRDEQGIVRFFA 301
Query: 78 GMQVEVSKY 86
G+QV+++ +
Sbjct: 302 GVQVDITAH 310
>gi|384250283|gb|EIE23763.1| putative blue light receptor [Coccomyxa subellipsoidea C-169]
Length = 803
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 52/104 (50%), Positives = 68/104 (65%), Gaps = 3/104 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD EV IRDAV+ G+ RLLNY++DGTPFWNLLT+TPIK + GK KF+
Sbjct: 82 RFLQGEGTDPKEVAIIRDAVKKGEGCSVRLLNYRRDGTPFWNLLTMTPIKTEDGKVSKFV 141
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITE 121
G+QV+V+ TEG +A L++YD R +E +I +
Sbjct: 142 GVQVDVTSKTEG---RAFSDATGVPLLVKYDTRLRENVAKNIVQ 182
Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 33/67 (49%), Positives = 47/67 (70%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD + IRDA+++ R+LNY+K G PFWN+LT+ P+ D G + FI
Sbjct: 321 RFLQGPDTDPKAISIIRDAIKSQSEATVRILNYRKSGQPFWNMLTIAPMADVDGTSRFFI 380
Query: 78 GMQVEVS 84
G+QV+V+
Sbjct: 381 GVQVDVT 387
>gi|129560442|dbj|BAF48777.1| LOV-domain containing protein [Marchantia polymorpha]
Length = 718
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 65/87 (74%), Gaps = 7/87 (8%)
Query: 1 MSDPTGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFW 58
M+ T KE++G C RFLQG TD ++E IRDA+ N KS+ G+LLNYKKDG PFW
Sbjct: 312 MTGYTAKEVVGRNC-----RFLQGQYTDAKDIEMIRDALVNRKSFSGKLLNYKKDGIPFW 366
Query: 59 NLLTVTPIKDDSGKTIKFIGMQVEVSK 85
NLLT++PIKD+ G+ IK+IGMQ EV++
Sbjct: 367 NLLTISPIKDEEGRIIKYIGMQAEVTE 393
>gi|218186238|gb|EEC68665.1| hypothetical protein OsI_37115 [Oryza sativa Indica Group]
Length = 458
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 61/80 (76%), Gaps = 5/80 (6%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T KE++G C RFLQG TD +E++KIR ++ NG +YCGR+LNYKKDGTPFWN
Sbjct: 160 MTGYTSKEVVGRNC----RFLQGSGTDPHEIDKIRQSLANGSNYCGRILNYKKDGTPFWN 215
Query: 60 LLTVTPIKDDSGKTIKFIGM 79
LLT+ PIKD+ G+ +KFIG
Sbjct: 216 LLTIAPIKDEDGRLLKFIGF 235
>gi|255088732|ref|XP_002506288.1| blue light receptor [Micromonas sp. RCC299]
gi|226521560|gb|ACO67546.1| blue light receptor [Micromonas sp. RCC299]
Length = 870
Score = 99.0 bits (245), Expect = 5e-19, Method: Composition-based stats.
Identities = 51/111 (45%), Positives = 70/111 (63%), Gaps = 2/111 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ET+ ++V KI +AV+ G+ RLLNY+KDG FWNLLTV P+K G KFI
Sbjct: 99 RFLQGEETNMDDVRKISEAVKKGERITVRLLNYRKDGQKFWNLLTVAPVKLPDGTVAKFI 158
Query: 78 GMQVEVSKYTEGV--NDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTV 126
G+QV+VS TEG N A++ L++YD R K++ + +V + V
Sbjct: 159 GVQVDVSDRTEGNADNSAAMKDTKGLPLLVKYDQRLKDQNFNRVDDVEKAV 209
Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 41/100 (41%), Positives = 59/100 (59%), Gaps = 5/100 (5%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD++ V +IR A+ G RLLNY K G PFWN+ T+ P++D+ G F
Sbjct: 278 RFLQGPRTDRSAVAEIRKAIDEGSECTVRLLNYTKQGKPFWNMFTMAPVRDEQGNVRFFA 337
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIR-YDARQKEKAL 116
G+QV+V+ YT +K + S L++ YD + E +
Sbjct: 338 GVQVDVTVYTREEGEK----DATSLDLVKEYDKDRDESSF 373
>gi|145355076|ref|XP_001421797.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582035|gb|ABP00091.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 734
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 4/116 (3%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD N+V ++R+A++ G + RLLNYKKDGTPFWN L V P+K G K+I
Sbjct: 67 RFLQGEATDGNDVRELREAIKRGDRWSVRLLNYKKDGTPFWNYLVVAPVKLADGTVAKYI 126
Query: 78 GMQVEVSKY---TEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRSQ 130
G+QV+V++ T G G+ RYDAR +LG ++EV V+ ++
Sbjct: 127 GVQVDVTEVKDATTGERGIDFDEEGMPVP-SRYDARAAAVSLGRVSEVENAVRAAE 181
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 34/78 (43%), Positives = 50/78 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD+ V KIR A+ G+ RLLNY K G FWN+ T+ P++DD G F
Sbjct: 249 RFLQGPKTDRAAVAKIRQAIELGEECTVRLLNYTKSGKQFWNMFTLAPVRDDQGIVRFFA 308
Query: 78 GMQVEVSKYTEGVNDKAL 95
G+QV+++ + D+++
Sbjct: 309 GVQVDITAHDPSTEDESI 326
>gi|33357429|pdb|1N9L|A Chain A, Crystal Structure Of The Phot-lov1 Domain From
Chlamydomonas Reinhardtii In The Dark State.
gi|33357432|pdb|1N9N|A Chain A, Crystal Structure Of The Phot-Lov1 Domain From
Chlamydomonas Reinhardtii In Illuminated State. Data Set
Of A Single Crystal.
gi|33357433|pdb|1N9O|A Chain A, Crystal Structure Of The Phot-Lov1 Domain From
Chlamydomonas Reinhardtii In Illuminated State.
Composite Data Set
Length = 109
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 54/67 (80%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD EV+KIRDA++ G++ RLLNY+KDGTPFWNLLTVTPIK G+ KF+
Sbjct: 42 RFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPFWNLLTVTPIKTPDGRVSKFV 101
Query: 78 GMQVEVS 84
G+QV+V+
Sbjct: 102 GVQVDVT 108
>gi|307109021|gb|EFN57260.1| hypothetical protein CHLNCDRAFT_6687, partial [Chlorella
variabilis]
Length = 730
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 48/107 (44%), Positives = 67/107 (62%), Gaps = 6/107 (5%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78
FLQGP+TD V ++ +AV G+ RLL Y+K G FWN+LT+TPI DD G +K +G
Sbjct: 57 FLQGPDTDPQAVRQLDEAVEAGRPLTLRLLCYRKSGKAFWNMLTMTPIHDDEGNVVKIVG 116
Query: 79 MQVEVSKYTEGVNDKALR--PNGLSKSLIRYDARQKEKALGSITEVI 123
+QV+VS+ TEG +A++ GL L+ YD R KE+ TE +
Sbjct: 117 VQVDVSRTTEG---RAVQCCAQGLP-LLVHYDERLKERVAWPATEEV 159
Score = 75.1 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 34/68 (50%), Positives = 46/68 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD+ V ++R A+ G+ R+LNY K G PFWNLLTV PI+D G +
Sbjct: 250 RFLQGPGTDRATVNELRAAILAGRECTVRMLNYTKAGKPFWNLLTVAPIRDGLGVLRFIV 309
Query: 78 GMQVEVSK 85
G+QV+V++
Sbjct: 310 GIQVDVTE 317
>gi|325919171|ref|ZP_08181226.1| PAS domain S-box [Xanthomonas gardneri ATCC 19865]
gi|325550341|gb|EGD21140.1| PAS domain S-box [Xanthomonas gardneri ATCC 19865]
Length = 180
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 75/124 (60%), Gaps = 17/124 (13%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ + +E+IG C RFLQGP+TD V ++RD++ N +++ +LNY+KDG+PFWN
Sbjct: 25 MTGYSSEEVIGHN--C-RFLQGPDTDPANVNEVRDSIANRRAFATEVLNYRKDGSPFWNA 81
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
L V+P+ DD G+ + F G Q++VS+ + + ALR QK +ALG +T
Sbjct: 82 LFVSPVFDDKGELVYFFGSQLDVSRRRDA--EDALR------------QAQKMEALGQLT 127
Query: 121 EVIQ 124
I+
Sbjct: 128 GGIE 131
>gi|161367346|gb|ABX71079.1| putative phototropin [synthetic construct]
Length = 115
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 59/85 (69%), Gaps = 3/85 (3%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ E+IG RFLQG +T+KN+V ++R+A++NG + RLLNYKKDGTPFWN
Sbjct: 29 MTGYAAAEVIG---YNCRFLQGEKTNKNDVRELREAIKNGDRWSVRLLNYKKDGTPFWNY 85
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSK 85
L V P+K G +K+IG+Q +V++
Sbjct: 86 LVVAPVKLADGTVVKYIGVQTDVTE 110
>gi|62361299|gb|AAX81328.1| neochrome [Mougeotia scalaris]
Length = 1442
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 71/127 (55%), Gaps = 8/127 (6%)
Query: 20 LQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGM 79
L+G ETD K+ A+ Y GRLL+YKKDGTPFWNL+T PIK+ + + F+ +
Sbjct: 680 LEGLETDVAAASKLHLALSGRTQYSGRLLHYKKDGTPFWNLITCGPIKNGQNEVVNFVIV 739
Query: 80 QVEVSKYTEGVN--------DKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRSQS 131
E++KY E + D + G SLIRYD R KEK+ + E+I+ VK +
Sbjct: 740 FQELAKYHEISSVPPNLVDGDLSAPEKGFPVSLIRYDGRLKEKSSRIVDEIIRLVKNPAT 799
Query: 132 HIRALSL 138
+L+L
Sbjct: 800 IADSLAL 806
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 5 TGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVT 64
T +E IG +L FL G E+ EV+KIR AV+N +L+ Y+K+G FW L ++
Sbjct: 928 TREENIGGDIL---FLDGEESSPAEVDKIRKAVQNNDELSLQLVAYRKNGDKFWALYHLS 984
Query: 65 PIKDDSGKTIKFIGMQVEVSKYTEGVNDKALR 96
KD G + I + ++ + ++D A R
Sbjct: 985 VAKDKDGNALYIINVVKDLGEAQ--ISDAAFR 1014
>gi|21231858|ref|NP_637775.1| histidine kinase [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66768015|ref|YP_242777.1| histidine kinase [Xanthomonas campestris pv. campestris str. 8004]
gi|21113578|gb|AAM41699.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66573347|gb|AAY48757.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
8004]
Length = 540
Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 43/103 (41%), Positives = 63/103 (61%), Gaps = 14/103 (13%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V +R+A+ N + + +LNY+KDG+ FWN L V+P+ DD+GK + F
Sbjct: 77 RFLQGPETDRQAVADVREAIDNRREFATEVLNYRKDGSTFWNALFVSPVFDDTGKLVYFF 136
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
G Q++VS+ + + ALR QK +ALG +T
Sbjct: 137 GSQLDVSRRRDA--EDALR------------QAQKMEALGQLT 165
>gi|73760082|dbj|BAE20159.1| neochrome [Mougeotia scalaris]
gi|73760092|dbj|BAE20164.1| neochrome [Mougeotia scalaris]
Length = 1442
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 71/127 (55%), Gaps = 8/127 (6%)
Query: 20 LQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGM 79
L+G ETD K+ A+ Y GRLL+YKKDGTPFWNL+T PIK+ + + F+ +
Sbjct: 680 LEGLETDVAAASKLHLALSGRTQYSGRLLHYKKDGTPFWNLITCGPIKNGQNEVVNFVIV 739
Query: 80 QVEVSKYTEGVN--------DKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRSQS 131
E++KY E + D + G SLIRYD R KEK+ + E+I+ VK +
Sbjct: 740 FQELAKYHEISSVPPNLVDGDLSAPEKGFPVSLIRYDGRLKEKSSRIVDEIIRLVKNPAT 799
Query: 132 HIRALSL 138
+L+L
Sbjct: 800 IADSLAL 806
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 5 TGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVT 64
T +E IG +L FL G E+ EV+KIR AV+N +L+ Y+K+G FW L ++
Sbjct: 928 TREENIGGDIL---FLDGEESSPAEVDKIRKAVQNNDELSLQLVAYRKNGDKFWALYHLS 984
Query: 65 PIKDDSGKTIKFIGMQVEVSKYTEGVNDKALR 96
KD G + I + ++ + ++D A R
Sbjct: 985 VAKDKDGNALYIINVVKDLGEAQ--ISDAAFR 1014
>gi|73760080|dbj|BAE20158.1| neochrome [Mougeotia scalaris]
gi|73760090|dbj|BAE20163.1| neochrome [Mougeotia scalaris]
Length = 1486
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 15/129 (11%)
Query: 9 LIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKD 68
L G C R L+G ETD+ EV + +A+ G Y GR L+YK DG+PFW+L+T ++D
Sbjct: 685 LGGSC----RKLEGYETDELEVSRFLEALEAGSQYSGRQLHYKSDGSPFWDLVTSAAVQD 740
Query: 69 DSGKTIKFIGMQVEVSKYTEGVNDKALRPN----------GLSKSLIRYDARQKEKALGS 118
+ + + + EV+KY EG + +P+ G SLIRYD R KEK+
Sbjct: 741 EFDNVVNHVIVYQEVAKYAEGQLPQG-KPSIAMASPSTEKGFPVSLIRYDGRLKEKSTRK 799
Query: 119 ITEVIQTVK 127
+ E++Q +K
Sbjct: 800 VNEIVQAMK 808
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 5 TGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVT 64
T +E IG L+ +L G T ++V KIR A +N K + L YKK+G FW L +
Sbjct: 949 TREEHIGGELI---YLDGDNTSTSDVRKIRSAAQNNKELSMQFLAYKKNGDTFWALYHFS 1005
Query: 65 PIKDDSGKTIKFIGMQVEVSK 85
+KD G + + + ++ K
Sbjct: 1006 MVKDSDGTVLYIVNVVKDLGK 1026
>gi|251772029|gb|EES52601.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
[Leptospirillum ferrodiazotrophum]
Length = 1594
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 55/71 (77%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQG T+ VE+IR A+ + + G++LNY+KDG+PFWNLLT++P++D+SG+ ++F+
Sbjct: 967 RILQGEGTESKTVEEIRRAIEGERPFRGQILNYRKDGSPFWNLLTISPVRDESGRLVEFV 1026
Query: 78 GMQVEVSKYTE 88
G+Q +V++ E
Sbjct: 1027 GVQRDVTEIVE 1037
>gi|188991140|ref|YP_001903150.1| histidine kinase [Xanthomonas campestris pv. campestris str. B100]
gi|167732900|emb|CAP51096.1| Sensory box histidine kinase/response regulator [Xanthomonas
campestris pv. campestris]
Length = 540
Score = 85.9 bits (211), Expect = 5e-15, Method: Composition-based stats.
Identities = 43/103 (41%), Positives = 63/103 (61%), Gaps = 14/103 (13%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V +R+A+ N + + +LNY+KDG+ FWN L V+P+ DD+GK + F
Sbjct: 77 RFLQGPETDRQAVIDVREAIDNRREFATEVLNYRKDGSTFWNALFVSPVFDDTGKLVYFF 136
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
G Q++VS+ + + ALR QK +ALG +T
Sbjct: 137 GSQLDVSRRRDA--EDALR------------QAQKMEALGQLT 165
>gi|162567476|ref|NP_419104.2| sensory box histidine kinase [Caulobacter crescentus CB15]
gi|221233226|ref|YP_002515662.1| photosensory histidine protein kinase LovK [Caulobacter crescentus
NA1000]
gi|160369950|gb|AAK22272.2| LOV histidine kinase LovK [Caulobacter crescentus CB15]
gi|220962398|gb|ACL93754.1| photosensory histidine protein kinase LovK [Caulobacter crescentus
NA1000]
Length = 368
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 50/67 (74%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD ++ +RDA+ G+ LLNY+KDG+PFWN L ++P+++D+G+ + F
Sbjct: 71 RFLQGPDTDPKAIQAVRDALAAGEDVAVDLLNYRKDGSPFWNALNMSPVRNDAGQLVYFF 130
Query: 78 GMQVEVS 84
G QV+V+
Sbjct: 131 GSQVDVT 137
>gi|163851076|ref|YP_001639119.1| histidine kinase [Methylobacterium extorquens PA1]
gi|218529906|ref|YP_002420722.1| histidine kinase [Methylobacterium extorquens CM4]
gi|240138210|ref|YP_002962682.1| sensor hybrid histidine kinase with PAS/PAC and response receiver
regulator receiver domains [Methylobacterium extorquens
AM1]
gi|254560770|ref|YP_003067865.1| sensor hybrid histidine kinase with PAS/PAC and response receiver
regulator receiver domains [Methylobacterium extorquens
DM4]
gi|418059761|ref|ZP_12697700.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium extorquens
DSM 13060]
gi|163662681|gb|ABY30048.1| PAS sensor protein [Methylobacterium extorquens PA1]
gi|218522209|gb|ACK82794.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium extorquens
CM4]
gi|240008179|gb|ACS39405.1| putative sensor hybrid histidine kinase with PAS/PAC and response
receiver regulator receiver domains [Methylobacterium
extorquens AM1]
gi|254268048|emb|CAX23919.1| putative sensor hybrid histidine kinase with PAS/PAC and response
receiver regulator receiver domains [Methylobacterium
extorquens DM4]
gi|373566703|gb|EHP92693.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium extorquens
DSM 13060]
Length = 541
Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 38/86 (44%), Positives = 59/86 (68%), Gaps = 5/86 (5%)
Query: 1 MSDPTGKELIGC-CLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ + +ELIG C RFLQGP+TD++ V ++RDA+R + + +LNY+KDG+ FWN
Sbjct: 66 MTGYSAEELIGSNC----RFLQGPDTDRDTVSEVRDAIREHREFAAEILNYRKDGSSFWN 121
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSK 85
L V+P+ + SG + F G Q++VS+
Sbjct: 122 ALFVSPVFNRSGDLVYFFGSQLDVSR 147
>gi|407918006|gb|EKG11304.1| PAS domain-containing protein [Macrophomina phaseolina MS6]
Length = 693
Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 47/113 (41%), Positives = 66/113 (58%), Gaps = 5/113 (4%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T + V +IR+A+R+G+ C LLNY++DG+PF NL V P+ D+ G FI
Sbjct: 254 RFLQGPKTAPDSVRRIREAIRSGQEICEILLNYRRDGSPFINLCLVAPLYDNKGNVRYFI 313
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRY---DARQKE--KALGSITEVIQT 125
G Q++V+ EG L + L Y D QK KA+G + E+I T
Sbjct: 314 GCQIDVTNLIEGGKGLESFQLLLDQDLGAYEQGDNPQKSSLKAIGHLAELIST 366
>gi|384428356|ref|YP_005637715.1| two-component system sensor-response regulator hybrid protein
[Xanthomonas campestris pv. raphani 756C]
gi|341937458|gb|AEL07597.1| two-component system sensor-response regulator hybrid protein
[Xanthomonas campestris pv. raphani 756C]
Length = 540
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 42/103 (40%), Positives = 63/103 (61%), Gaps = 14/103 (13%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V +R+A+ + + + +LNY+KDG+ FWN L V+P+ DD+GK + F
Sbjct: 77 RFLQGPETDRQAVIDVREAIDSRREFATEVLNYRKDGSTFWNALFVSPVFDDTGKLVYFF 136
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
G Q++VS+ + + ALR QK +ALG +T
Sbjct: 137 GSQLDVSRRRDA--EDALR------------QAQKMEALGQLT 165
>gi|448475322|ref|ZP_21603040.1| HTR-like protein [Halorubrum aidingense JCM 13560]
gi|445816793|gb|EMA66680.1| HTR-like protein [Halorubrum aidingense JCM 13560]
Length = 596
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 52/71 (73%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD+ VE++R+++ + LLNY++DGT FWN ++V PI+DD G+ I+++
Sbjct: 307 RFLQGPDTDEEPVERLRESIAAAEPTSVELLNYRRDGTEFWNRVSVAPIRDDDGRPIQWV 366
Query: 78 GMQVEVSKYTE 88
G Q ++S + E
Sbjct: 367 GFQEDISAFKE 377
>gi|311692312|dbj|BAJ24887.1| LOV/LOV protein 1 [Physcomitrella patens]
Length = 435
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 48/68 (70%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD V +IR+A++ + Y R+LNYKKD TPFWN L V P++ +G F+
Sbjct: 326 RFLQGPDTDPEAVREIREAIKAERPYTVRILNYKKDNTPFWNHLHVAPVRSATGGVAYFV 385
Query: 78 GMQVEVSK 85
G+Q+ VS+
Sbjct: 386 GVQLNVSE 393
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD+ V +IRDA+R ++ +LNY K PFWNL + PI G+ I ++
Sbjct: 103 RFLQGPDTDRRTVVEIRDAIREERACQVLILNYTKYKEPFWNLFHMAPIFSSDGQVIHYV 162
Query: 78 GMQVEVS 84
G+Q ++
Sbjct: 163 GVQTPIA 169
>gi|422645017|ref|ZP_16708154.1| histidine kinase [Pseudomonas syringae pv. maculicola str. ES4326]
gi|330958568|gb|EGH58828.1| histidine kinase [Pseudomonas syringae pv. maculicola str. ES4326]
Length = 534
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 69/120 (57%), Gaps = 17/120 (14%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ + E+IG C RFLQGPETD + V+ +RDA+R +LNY+KDG+ FWN
Sbjct: 57 MTGYSSDEIIGTN--C-RFLQGPETDPSVVQSLRDAIRERTDISAEILNYRKDGSSFWNA 113
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
L ++P+ +D+G I F Q+++S+ + ++ALR QK +ALG +T
Sbjct: 114 LFISPVYNDAGSLIYFFASQLDISRRKDA--EEALR------------QAQKMEALGQLT 159
>gi|188580835|ref|YP_001924280.1| histidine kinase [Methylobacterium populi BJ001]
gi|179344333|gb|ACB79745.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
BJ001]
Length = 541
Score = 82.4 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 39/87 (44%), Positives = 57/87 (65%), Gaps = 7/87 (8%)
Query: 1 MSDPTGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFW 58
M+ T ELIG C RFLQGP+TD++ V +RDA+R + + +LNY+KDG+ FW
Sbjct: 66 MTGYTVDELIGNNC-----RFLQGPDTDRDTVSDVRDAIREHREFATEILNYRKDGSSFW 120
Query: 59 NLLTVTPIKDDSGKTIKFIGMQVEVSK 85
N L V+P+ + SG + F G Q++VS+
Sbjct: 121 NALFVSPVFNRSGDLVYFFGSQLDVSR 147
>gi|334117232|ref|ZP_08491324.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Microcoleus vaginatus FGP-2]
gi|333462052|gb|EGK90657.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Microcoleus vaginatus FGP-2]
Length = 1024
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 55/81 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD+ V IRDA+R G+ + NY+KDG+PFW+ L+++P++DDS F+
Sbjct: 100 RFLQGPDTDRTTVANIRDALRQGREIQTTIKNYRKDGSPFWSKLSLSPVRDDSANLTHFV 159
Query: 78 GMQVEVSKYTEGVNDKALRPN 98
G+Q ++S+ V++ + N
Sbjct: 160 GIQSDLSERICDVHEALQQAN 180
>gi|219850592|ref|YP_002465025.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM
9485]
gi|219544851|gb|ACL26589.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM
9485]
Length = 913
Score = 82.4 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 50/67 (74%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD V ++R+A+ + R+LNY+KDG PFWN L+++P++D++G + F+
Sbjct: 86 RFLQGPQTDAATVARLREAIAAARPIQERILNYRKDGQPFWNQLSISPVRDETGNVVAFV 145
Query: 78 GMQVEVS 84
G+Q +V+
Sbjct: 146 GVQTDVT 152
>gi|374852440|dbj|BAL55373.1| signal transduction protein [uncultured gamma proteobacterium]
Length = 747
Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 33/68 (48%), Positives = 50/68 (73%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD + +IR A++ G+ L NY+KDGTPFWN L ++P++D++GK F+
Sbjct: 427 RFLQGPETDSEAIAEIRAALKEGRDCHLTLKNYRKDGTPFWNELLISPVRDENGKLTHFV 486
Query: 78 GMQVEVSK 85
G+Q +V++
Sbjct: 487 GVQTDVTE 494
>gi|168701427|ref|ZP_02733704.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
2246]
Length = 1032
Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 34/67 (50%), Positives = 50/67 (74%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ++D V +R+AVR G+ +LNY+KDGTPFWN L+V+PI+DD+G+ F+
Sbjct: 561 RFLQGKDSDPAAVALVREAVRAGRDCAVEVLNYRKDGTPFWNALSVSPIRDDAGELTHFV 620
Query: 78 GMQVEVS 84
G+ V+V+
Sbjct: 621 GVLVDVT 627
>gi|255945463|ref|XP_002563499.1| Pc20g10050 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211588234|emb|CAP86334.1| Pc20g10050 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 667
Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 37/80 (46%), Positives = 58/80 (72%), Gaps = 1/80 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T+ N V +IR+A++ G+ + LLNY++DG+PF NLL ++P+ D+ GK FI
Sbjct: 384 RFLQGPKTNPNSVRRIREALKAGRYHSELLLNYRRDGSPFMNLLEISPLCDNRGKLRYFI 443
Query: 78 GMQVEVSKYT-EGVNDKALR 96
G Q++VS+ EG ++L+
Sbjct: 444 GAQIDVSRLVMEGAQMESLQ 463
>gi|325915148|ref|ZP_08177474.1| PAS domain S-box [Xanthomonas vesicatoria ATCC 35937]
gi|325538670|gb|EGD10340.1| PAS domain S-box [Xanthomonas vesicatoria ATCC 35937]
Length = 519
Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 45/122 (36%), Positives = 68/122 (55%), Gaps = 21/122 (17%)
Query: 1 MSDPTGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFW 58
M+ + E+IG C RFLQGPETD V+ +R+++ + + +LNY+KDG+ FW
Sbjct: 42 MTGYSADEIIGNNC-----RFLQGPETDPASVQDVRESIEQRREFATEVLNYRKDGSSFW 96
Query: 59 NLLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGS 118
N L V+P+ DD G + F G Q++VS+ + + ALR QK +ALG
Sbjct: 97 NALFVSPVFDDQGNLVYFFGSQLDVSRRRDA--EDALR------------QAQKMEALGQ 142
Query: 119 IT 120
+T
Sbjct: 143 LT 144
>gi|428316459|ref|YP_007114341.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Oscillatoria nigro-viridis PCC 7112]
gi|428240139|gb|AFZ05925.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Oscillatoria nigro-viridis PCC 7112]
Length = 1003
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 50/68 (73%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD+ V KIR+A+R G++ + NY+KDGTPFW L+++P++DD F+
Sbjct: 78 RFLQGPDTDRTTVAKIREALRQGRAIQTPIKNYRKDGTPFWTKLSLSPVRDDKANLTHFV 137
Query: 78 GMQVEVSK 85
G+Q ++S+
Sbjct: 138 GVQSDLSE 145
>gi|390573573|ref|ZP_10253744.1| histidine kinase [Burkholderia terrae BS001]
gi|389934568|gb|EIM96525.1| histidine kinase [Burkholderia terrae BS001]
Length = 192
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 67/116 (57%), Gaps = 14/116 (12%)
Query: 5 TGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVT 64
TG EL RFLQGPETD+ ++++RDAV + + +LNY+KDG+ FWN L V+
Sbjct: 59 TGYELQEIIGTNCRFLQGPETDRATIDEVRDAVAHRREIATEILNYRKDGSTFWNALFVS 118
Query: 65 PIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
P+ ++ G+ + F G Q++VS+ + + L ++ QK +ALG +T
Sbjct: 119 PVFNEQGELVYFFGSQLDVSRRRDA-------EDALHQA-------QKMEALGQLT 160
>gi|334116631|ref|ZP_08490723.1| PAS/PAC sensor signal transduction histidine kinase [Microcoleus
vaginatus FGP-2]
gi|333461451|gb|EGK90056.1| PAS/PAC sensor signal transduction histidine kinase [Microcoleus
vaginatus FGP-2]
Length = 1102
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 74/126 (58%), Gaps = 20/126 (15%)
Query: 5 TGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLT 62
+ +E+IG C RFLQGP+TD+ E++K+R ++R G L NY+KD TPFWN L
Sbjct: 48 SAEEVIGRNC-----RFLQGPDTDQAELDKLRSSLRAGTEIQVVLKNYRKDKTPFWNELI 102
Query: 63 VTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEV 122
V+PI D+ GK FIG+Q ++SK + AL+ ++ ++ +A+ ++T V
Sbjct: 103 VSPILDNEGKLTHFIGVQNDISKRVAA--ETALQ-----------ESEERLRAIATVTPV 149
Query: 123 IQTVKR 128
++ R
Sbjct: 150 PMSITR 155
>gi|311692314|dbj|BAJ24888.1| LOV/LOV protein 2 [Physcomitrella patens]
Length = 437
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 59/94 (62%), Gaps = 10/94 (10%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD V +IR+A++ + R+LNY+KD TPFWN L V P++ +GK F+
Sbjct: 329 RFLQGPDTDPESVREIREAIQAERPCTVRILNYRKDDTPFWNHLHVAPVRSATGKVAYFV 388
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQ 111
G+Q++VS + D +R + L R DA+Q
Sbjct: 389 GVQLDVS-----IADLPMRGDSL-----RADAKQ 412
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 47/68 (69%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD+ V +IRDA+R ++ R+LNY K G PFWNL + PI + G+ I ++
Sbjct: 101 RFLQGPDTDRGTVVEIRDAIREERACQVRILNYTKQGEPFWNLFHMAPIFSNDGRVIHYV 160
Query: 78 GMQVEVSK 85
G+Q ++K
Sbjct: 161 GVQTPIAK 168
>gi|424875449|ref|ZP_18299111.1| PAS domain S-box [Rhizobium leguminosarum bv. viciae WSM1455]
gi|393171150|gb|EJC71197.1| PAS domain S-box [Rhizobium leguminosarum bv. viciae WSM1455]
Length = 375
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 69/131 (52%), Gaps = 8/131 (6%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ + ELIG C R LQGPETD+ V IRD+V G+ +LNY+KDG+ FWN
Sbjct: 61 MTGYSNDELIGRNC----RLLQGPETDRRTVGHIRDSVARGQDISVDILNYRKDGSTFWN 116
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGS- 118
L ++P++DD G+ I F Q++ + + AL + +++ R A K L
Sbjct: 117 ALFISPVRDDEGRIIYFFASQLDFTTVKSREAELALARHQAEEAVARNTAELKSALLAKT 176
Query: 119 --ITEVIQTVK 127
I EV VK
Sbjct: 177 LLIHEVDHRVK 187
>gi|285018414|ref|YP_003376125.1| sensory box histidine kinase/response regulator protein
[Xanthomonas albilineans GPE PC73]
gi|283473632|emb|CBA16135.1| putative sensory box histidine kinase/response regulator protein
[Xanthomonas albilineans GPE PC73]
Length = 544
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 46/122 (37%), Positives = 69/122 (56%), Gaps = 21/122 (17%)
Query: 1 MSDPTGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFW 58
M+ + +ELIG C RFLQGP+TD+ V +RDA+ + +LNY+KDG+ FW
Sbjct: 65 MTGYSKEELIGNNC-----RFLQGPDTDRETVRSVRDAIASHTEVAVEILNYRKDGSSFW 119
Query: 59 NLLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGS 118
N L ++P+ D+ GK + F G Q++VS+ + + ALR QK +ALG
Sbjct: 120 NALYISPVYDECGKLVYFFGSQLDVSRRRDA--EDALR------------QAQKMEALGQ 165
Query: 119 IT 120
+T
Sbjct: 166 LT 167
>gi|410090959|ref|ZP_11287539.1| histidine kinase [Pseudomonas viridiflava UASWS0038]
gi|409761826|gb|EKN46878.1| histidine kinase [Pseudomonas viridiflava UASWS0038]
Length = 503
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 17/120 (14%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ +E+IG C RFLQGPETD+ V+ IRDA+ +LNY+KDG+ FWN
Sbjct: 25 MTGYASEEIIGSN--C-RFLQGPETDRAVVQTIRDAIHERNDISTEILNYRKDGSSFWNA 81
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
L ++P+ +D+G I F Q+++S+ + ++ALR QK +ALG +T
Sbjct: 82 LFISPVYNDAGDLIYFFASQLDISRRRDA--EEALR------------QAQKMEALGQLT 127
>gi|168047069|ref|XP_001775994.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672652|gb|EDQ59186.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 406
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 59/94 (62%), Gaps = 10/94 (10%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD V +IR+A++ + R+LNY+KD TPFWN L V P++ +GK F+
Sbjct: 298 RFLQGPDTDPESVREIREAIQAERPCTVRILNYRKDDTPFWNHLHVAPVRSATGKVAYFV 357
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQ 111
G+Q++VS + D +R + L R DA+Q
Sbjct: 358 GVQLDVS-----IADLPMRGDSL-----RADAKQ 381
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 47/68 (69%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD+ V +IRDA+R ++ R+LNY K G PFWNL + PI + G+ I ++
Sbjct: 85 RFLQGPDTDRGTVVEIRDAIREERACQVRILNYTKQGEPFWNLFHMAPIFSNDGRVIHYV 144
Query: 78 GMQVEVSK 85
G+Q ++K
Sbjct: 145 GVQTPIAK 152
>gi|428316777|ref|YP_007114659.1| PAS/PAC sensor signal transduction histidine kinase [Oscillatoria
nigro-viridis PCC 7112]
gi|428240457|gb|AFZ06243.1| PAS/PAC sensor signal transduction histidine kinase [Oscillatoria
nigro-viridis PCC 7112]
Length = 1102
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 50/68 (73%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD+ E++K+R ++R+G L NY+KD TPFWN L V+PI D+ GK FI
Sbjct: 58 RFLQGPDTDRAELDKLRSSLRSGTEIQVVLKNYRKDKTPFWNELMVSPILDNEGKLTHFI 117
Query: 78 GMQVEVSK 85
G+Q ++SK
Sbjct: 118 GVQNDISK 125
>gi|289671649|ref|ZP_06492539.1| histidine kinase, partial [Pseudomonas syringae pv. syringae FF5]
Length = 259
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 68/120 (56%), Gaps = 17/120 (14%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ +E+IG C RFLQGP+TD+ V+ IRDA+ +LNY+KDG+ FWN
Sbjct: 57 MTGYASEEIIGSN--C-RFLQGPDTDRAAVQSIRDAIEERVDISTEILNYRKDGSSFWNA 113
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
L ++P+ +D+G I F Q+++S+ + ++ALR QK +ALG +T
Sbjct: 114 LFISPVYNDAGDLIYFFASQLDISRRRDA--EEALR------------QAQKMEALGQLT 159
>gi|342888059|gb|EGU87476.1| hypothetical protein FOXB_02061 [Fusarium oxysporum Fo5176]
Length = 670
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 51/75 (68%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD++ + K+R A+ + LLN++KDGTPFWNLL + P+ D +GKT F+
Sbjct: 330 RFLQGPQTDRDGIAKMRSAIWRNEECTELLLNFRKDGTPFWNLLFLCPLLDTAGKTKFFM 389
Query: 78 GMQVEVSKYTEGVND 92
G Q++VS +D
Sbjct: 390 GAQIDVSSSLHDTHD 404
>gi|58582770|ref|YP_201786.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae KACC 10331]
Length = 428
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 66/120 (55%), Gaps = 17/120 (14%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ + +E+IG C RFLQGPETD + +R ++ + +LNY+KDG+ FWN
Sbjct: 63 MTGYSAEEVIGNN--C-RFLQGPETDPASISDVRQSIETRSEFATEVLNYRKDGSSFWNA 119
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
L V+P+ DD G + F G Q++VS+ + + ALR QK +ALG +T
Sbjct: 120 LFVSPVFDDHGNLVYFFGSQLDVSRRRDA--EDALR------------QAQKMEALGQLT 165
>gi|254500449|ref|ZP_05112600.1| hypothetical protein SADFL11_485 [Labrenzia alexandrii DFL-11]
gi|222436520|gb|EEE43199.1| hypothetical protein SADFL11_485 [Labrenzia alexandrii DFL-11]
Length = 369
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 48/66 (72%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78
FLQGP+TD + V ++R+++ + C +LNYKKDGTPFWN L+++PIK +G + F+G
Sbjct: 58 FLQGPDTDPHTVFQLRESLEAEMAICVEVLNYKKDGTPFWNALSISPIKTATGDLVAFVG 117
Query: 79 MQVEVS 84
Q +V+
Sbjct: 118 FQTDVT 123
>gi|152964317|ref|YP_001360101.1| PAS/PAC sensor protein [Kineococcus radiotolerans SRS30216]
gi|151358834|gb|ABS01837.1| putative PAS/PAC sensor protein [Kineococcus radiotolerans
SRS30216]
Length = 723
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 47/125 (37%), Positives = 69/125 (55%), Gaps = 17/125 (13%)
Query: 6 GKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTV 63
G+E++G C RFLQGP TD+ V +IR A+ G + LLNY+KDGT FWN + +
Sbjct: 209 GREVLGQNC-----RFLQGPGTDREAVARIRRALETGDTVTELLLNYRKDGTAFWNEVVI 263
Query: 64 TPIKDDSGKTIKFIGMQVEVS--KYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITE 121
+P+ D G+ F+G+Q +V+ E D AL L DAR + + L S+T+
Sbjct: 264 SPVHDADGRLTHFVGVQSDVTLRVQAERERDAAL--------LDARDARHRLEFLSSVTD 315
Query: 122 VIQTV 126
+ V
Sbjct: 316 RLSEV 320
>gi|241666844|ref|YP_002984928.1| signal transduction histidine kinase [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240862301|gb|ACS59966.1| signal transduction histidine kinase [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 375
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 69/131 (52%), Gaps = 8/131 (6%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ + ELIG C R LQGPETD+ V IRD+V G+ +LNY+KDG+ FWN
Sbjct: 61 MTGYSNDELIGRNC----RLLQGPETDRRSVGYIRDSVARGQDISVDILNYRKDGSTFWN 116
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGS- 118
L ++P++DD G+ I F Q++ + + AL + +++ R A K L
Sbjct: 117 ALFISPVRDDEGRIIYFFASQLDFTTVKSREAELALARHQAEEAVARNMAELKSALLAKT 176
Query: 119 --ITEVIQTVK 127
I EV VK
Sbjct: 177 LLIHEVDHRVK 187
>gi|424878480|ref|ZP_18302120.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WU95]
gi|392520972|gb|EIW45701.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WU95]
Length = 411
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 69/131 (52%), Gaps = 8/131 (6%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ + ELIG C R LQGPETD+ V IRD+V G+ +LNY+KDG+ FWN
Sbjct: 97 MTGYSNDELIGRNC----RLLQGPETDRRSVGYIRDSVARGQDISVDILNYRKDGSTFWN 152
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGS- 118
L ++P++DD G+ I F Q++ + + AL + +++ R A K L
Sbjct: 153 ALFISPVRDDEGRIIYFFASQLDFTTVKSREAELALARHQAEEAVARNMAELKSALLAKT 212
Query: 119 --ITEVIQTVK 127
I EV VK
Sbjct: 213 LLIHEVDHRVK 223
>gi|302187367|ref|ZP_07264040.1| histidine kinase [Pseudomonas syringae pv. syringae 642]
Length = 534
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 43/120 (35%), Positives = 70/120 (58%), Gaps = 17/120 (14%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ + +E+IG + RFLQGP+TD+ V+ IRDA+ +LNY+KDG+ FWN
Sbjct: 57 MTGYSSEEIIG---INCRFLQGPDTDRAAVQSIRDAIEERVDISTEILNYRKDGSSFWNA 113
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
L ++P+ +D+G+ I F Q+++S+ + ++ALR QK +ALG +T
Sbjct: 114 LFISPVYNDAGELIYFFASQLDISRRRDA--EEALR------------QAQKMEALGQLT 159
>gi|115401564|ref|XP_001216370.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114190311|gb|EAU32011.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 574
Score = 79.7 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 33/67 (49%), Positives = 49/67 (73%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T+KN V +IR+A+++G+ + LNY++DG+PF NLL P+ D G+ FI
Sbjct: 304 RFLQGPKTNKNSVRRIREAIQDGRHHSELFLNYRRDGSPFMNLLQCAPLCDSHGQIRYFI 363
Query: 78 GMQVEVS 84
G Q++VS
Sbjct: 364 GAQIDVS 370
>gi|383757613|ref|YP_005436598.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
[Rubrivivax gelatinosus IL144]
gi|381378282|dbj|BAL95099.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Rubrivivax gelatinosus IL144]
Length = 737
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 58/93 (62%), Gaps = 7/93 (7%)
Query: 5 TGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLT 62
T +E++G C LL QG T V+ +R+A+ G+ + G LLNY+KDGTPFWN L
Sbjct: 97 TAEEMLGNSCALL-----QGAATSAETVQAMREALDRGEPFHGELLNYRKDGTPFWNELK 151
Query: 63 VTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKAL 95
+ P++DD G +F+G+Q +V+ + +N +L
Sbjct: 152 IVPVRDDDGVITQFVGVQRDVTARRDAMNKLSL 184
>gi|119484845|ref|ZP_01619327.1| Multi-sensor Signal Transduction Histidine Kinase [Lyngbya sp. PCC
8106]
gi|119457663|gb|EAW38787.1| Multi-sensor Signal Transduction Histidine Kinase [Lyngbya sp. PCC
8106]
Length = 1211
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 48/68 (70%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD +E IR+++R K L NY+KDGTPFWN L ++P++D +G+ FI
Sbjct: 395 RFLQGNDTDPQAIETIRNSLREAKDCLVTLKNYRKDGTPFWNELAISPVRDTTGEVTHFI 454
Query: 78 GMQVEVSK 85
G+Q ++S+
Sbjct: 455 GIQTDISE 462
>gi|341613667|ref|ZP_08700536.1| hypothetical protein CJLT1_01890 [Citromicrobium sp. JLT1363]
Length = 358
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 46/67 (68%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD++ V ++R+A+ N LLNY+KDGTPFWN L + PI D +GK I F
Sbjct: 88 RFLQGAKTDRDAVARVREAIENEDVLVIELLNYRKDGTPFWNALHLGPIYDSNGKLIYFF 147
Query: 78 GMQVEVS 84
G Q +VS
Sbjct: 148 GSQWDVS 154
>gi|21243288|ref|NP_642870.1| histidine kinase [Xanthomonas axonopodis pv. citri str. 306]
gi|21108826|gb|AAM37406.1| sensor histidine kinase [Xanthomonas axonopodis pv. citri str. 306]
Length = 540
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 40/115 (34%), Positives = 66/115 (57%), Gaps = 8/115 (6%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD + +R+++ + + + +LNY+KDG+ FWN L ++P+ DD G + F
Sbjct: 77 RFLQGPETDPASISDVRESIESRREFATEVLNYRKDGSSFWNALFISPVFDDKGNLVYFF 136
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSL------IRYDARQKEKALGSITEVIQTV 126
G Q++VS+ + + ALR ++L I +D + + EVIQT+
Sbjct: 137 GSQLDVSRRRDA--EDALRQAQKMEALGQLTGGIAHDFNNLLQVMSGHLEVIQTM 189
>gi|390991282|ref|ZP_10261551.1| blue-light-activated protein [Xanthomonas axonopodis pv. punicae
str. LMG 859]
gi|372554009|emb|CCF68526.1| blue-light-activated protein [Xanthomonas axonopodis pv. punicae
str. LMG 859]
Length = 540
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 38/103 (36%), Positives = 60/103 (58%), Gaps = 14/103 (13%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD + +R+++ + + + +LNY+KDG+ FWN L ++P+ DD G + F
Sbjct: 77 RFLQGPETDPASISDVRESIESRREFATEVLNYRKDGSSFWNALFISPVFDDKGNLVYFF 136
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
G Q++VS+ + + ALR QK +ALG +T
Sbjct: 137 GSQLDVSRRRDA--EDALR------------QAQKMEALGQLT 165
>gi|296533497|ref|ZP_06896072.1| sensor histidine kinase/response regulator [Roseomonas cervicalis
ATCC 49957]
gi|296266172|gb|EFH12222.1| sensor histidine kinase/response regulator [Roseomonas cervicalis
ATCC 49957]
Length = 537
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 44/121 (36%), Positives = 68/121 (56%), Gaps = 19/121 (15%)
Query: 1 MSDPTGKELIGC-CLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T E++G C RFLQGPETD+ ++ +R A+R + +LNY+K+G+ FWN
Sbjct: 60 MTGYTQDEIVGTNC----RFLQGPETDRASIDAVRQALREEREIAIEILNYRKNGSTFWN 115
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
L ++P+ DD G+ F G Q++VS+ + + ALR QK +ALG +
Sbjct: 116 ALFISPVYDDDGRLRYFFGSQLDVSRRRDA--EDALR------------QAQKMEALGQL 161
Query: 120 T 120
T
Sbjct: 162 T 162
>gi|76800979|ref|YP_325987.1| bacterio-opsin activator [Natronomonas pharaonis DSM 2160]
gi|76556844|emb|CAI48418.1| receiver/sensor/bat box HTH-10 family transcription regulator Bat
(homolog to bacterioopsin activator) [Natronomonas
pharaonis DSM 2160]
Length = 681
Score = 79.3 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 40/112 (35%), Positives = 63/112 (56%), Gaps = 5/112 (4%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +T+ V IR AV + + LLNY+KDG PFWN L + PI+DD G+ +
Sbjct: 195 RFLQGEDTNPEAVATIRQAVDDRRPVSVELLNYRKDGEPFWNQLNIAPIRDDDGRVTHLV 254
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRS 129
G Q ++++ E V +A R +R D R++++ L I +++ V +
Sbjct: 255 GFQTDITERKE-VELRAQR----QAEQLRADRRKRQRLLARIDGLVRRVTEA 301
>gi|418517131|ref|ZP_13083298.1| histidine kinase [Xanthomonas axonopodis pv. malvacearum str.
GSPB1386]
gi|418520507|ref|ZP_13086556.1| histidine kinase [Xanthomonas axonopodis pv. malvacearum str.
GSPB2388]
gi|410703888|gb|EKQ62376.1| histidine kinase [Xanthomonas axonopodis pv. malvacearum str.
GSPB2388]
gi|410706188|gb|EKQ64651.1| histidine kinase [Xanthomonas axonopodis pv. malvacearum str.
GSPB1386]
Length = 540
Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 38/103 (36%), Positives = 60/103 (58%), Gaps = 14/103 (13%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD + +R+++ + + + +LNY+KDG+ FWN L ++P+ DD G + F
Sbjct: 77 RFLQGPETDPASISDVRESIESRREFATEVLNYRKDGSSFWNALFISPVFDDKGNLVYFF 136
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
G Q++VS+ + + ALR QK +ALG +T
Sbjct: 137 GSQLDVSRRRDA--EDALR------------QAQKMEALGQLT 165
>gi|197257792|gb|ACH56106.1| phototropin [synthetic construct]
Length = 139
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD+ V KIR+A+ NG+ RLLNY K G FWN+ T+ P++D+ G F
Sbjct: 52 RFLQGPKTDRAAVAKIREAIENGEECTVRLLNYTKTGEEFWNMFTLAPVRDEQGIVRFFA 111
Query: 78 GMQVEVSKY 86
G+QV+++ +
Sbjct: 112 GVQVDITAH 120
>gi|381170919|ref|ZP_09880071.1| Histidine kinase [Xanthomonas citri pv. mangiferaeindicae LMG 941]
gi|380688642|emb|CCG36558.1| Histidine kinase [Xanthomonas citri pv. mangiferaeindicae LMG 941]
Length = 502
Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats.
Identities = 38/103 (36%), Positives = 60/103 (58%), Gaps = 14/103 (13%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD + +R+++ + + + +LNY+KDG+ FWN L ++P+ DD G + F
Sbjct: 39 RFLQGPETDPASISDVRESIESRREFATEVLNYRKDGSSFWNALFISPVFDDKGNLVYFF 98
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
G Q++VS+ + + ALR QK +ALG +T
Sbjct: 99 GSQLDVSRRRDA--EDALR------------QAQKMEALGQLT 127
>gi|46121225|ref|XP_385167.1| hypothetical protein FG04991.1 [Gibberella zeae PH-1]
Length = 656
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 60/98 (61%), Gaps = 8/98 (8%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD++ + +R A+ LLN++KDGTPFWNLL + P+ D +GKT F+
Sbjct: 325 RFLQGPQTDRDRIANMRSAIWRNDECTELLLNFRKDGTPFWNLLFLCPLLDKTGKTKFFM 384
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKA 115
G Q++VS +D L+ ++ Y A ++E+A
Sbjct: 385 GAQIDVSSSIHDTDD-VLK-------VLSYGAMEEERA 414
>gi|408387827|gb|EKJ67533.1| hypothetical protein FPSE_12294 [Fusarium pseudograminearum CS3096]
Length = 656
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 60/98 (61%), Gaps = 8/98 (8%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD++ + +R A+ LLN++KDGTPFWNLL + P+ D +GKT F+
Sbjct: 325 RFLQGPQTDRDRIANMRSAIWRNDECTELLLNFRKDGTPFWNLLFLCPLLDKTGKTKFFM 384
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKA 115
G Q++VS +D L+ ++ Y A ++E+A
Sbjct: 385 GAQIDVSSSIHDTDD-VLK-------VLSYGAMEEERA 414
>gi|420243466|ref|ZP_14747390.1| PAS domain S-box [Rhizobium sp. CF080]
gi|398060866|gb|EJL52678.1| PAS domain S-box [Rhizobium sp. CF080]
Length = 375
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 56/85 (65%), Gaps = 5/85 (5%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ + E+IG C RFLQGP+TD+ V KIR+A+ G+ +LNY+KDG+ FWN
Sbjct: 61 MTGYSDDEIIGRNC----RFLQGPDTDRETVSKIREAIVAGQDVAIDILNYRKDGSTFWN 116
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVS 84
+ ++P++D++GK I F Q++ +
Sbjct: 117 AVFISPVRDEAGKIIYFFASQLDFT 141
>gi|325276384|ref|ZP_08142158.1| putative PAS/PAC sensor protein [Pseudomonas sp. TJI-51]
gi|324098479|gb|EGB96551.1| putative PAS/PAC sensor protein [Pseudomonas sp. TJI-51]
Length = 148
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 52/72 (72%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + D+ V++IR+A+R+GK + L NY+KDG+PFWN L+++P+ + + + +I
Sbjct: 54 RFLQGADHDQEAVQRIREAIRDGKPWREVLRNYRKDGSPFWNELSISPVFNQADQLTYYI 113
Query: 78 GMQVEVSKYTEG 89
G+Q +VS+ E
Sbjct: 114 GIQHDVSRQVEA 125
>gi|170742982|ref|YP_001771637.1| histidine kinase [Methylobacterium sp. 4-46]
gi|168197256|gb|ACA19203.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
Length = 544
Score = 79.0 bits (193), Expect = 6e-13, Method: Composition-based stats.
Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 23/120 (19%)
Query: 3 DPTGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
DP+ ELIG C RFLQGPETD + ++R A++ + +LNY+K+G+ FWN
Sbjct: 75 DPS--ELIGRNC-----RFLQGPETDPQTIAEVRRAIKERREISTEILNYRKNGSSFWNA 127
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
L V+P+ +D+G + F G Q++VS+ + + ALR QK KALG +T
Sbjct: 128 LFVSPVYNDAGDLVYFFGSQLDVSRRRDA--EDALR------------QAQKMKALGQLT 173
>gi|422607389|ref|ZP_16679389.1| histidine kinase, partial [Pseudomonas syringae pv. mori str.
301020]
gi|330891031|gb|EGH23692.1| histidine kinase [Pseudomonas syringae pv. mori str. 301020]
Length = 254
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 68/120 (56%), Gaps = 17/120 (14%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ + +E+IG C RFLQGPETD+ V+ IR+A+ +LNY+KDG+ FWN
Sbjct: 57 MTGYSSEEIIGTN--C-RFLQGPETDRAVVQSIREAIDERVDISTEILNYRKDGSTFWNA 113
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
L ++P+ +D+G I F Q+++S+ + + ALR QK +ALG +T
Sbjct: 114 LFISPVYNDAGDLIYFFASQLDISRRRDA--EDALR------------QAQKMEALGQLT 159
>gi|291295643|ref|YP_003507041.1| PAS/PAC sensor signal transduction histidine kinase [Meiothermus
ruber DSM 1279]
gi|290470602|gb|ADD28021.1| PAS/PAC sensor signal transduction histidine kinase [Meiothermus
ruber DSM 1279]
Length = 578
Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 34/73 (46%), Positives = 47/73 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP T+ V ++R A+ G+ LLNY+KDG PFWN L + P++D G+ F+
Sbjct: 53 RFLQGPATNPETVARLRRAIHEGRPAHVLLLNYRKDGQPFWNDLRIAPVRDVEGRLTHFV 112
Query: 78 GMQVEVSKYTEGV 90
G+Q +VS EGV
Sbjct: 113 GIQSDVSAKVEGV 125
>gi|251772607|gb|EES53172.1| putative diguanylate cyclase/phosphodiesterase [Leptospirillum
ferrodiazotrophum]
Length = 1369
Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 49/71 (69%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQGPETD V +IR A+ G+S+ L NY+KDGTPFWNLL++ P+K+ +G ++
Sbjct: 816 RLLQGPETDPETVREIRQALARGQSFRKALRNYRKDGTPFWNLLSLVPLKNSAGVITHYV 875
Query: 78 GMQVEVSKYTE 88
G+Q +++ E
Sbjct: 876 GVQNDITDIRE 886
>gi|428311102|ref|YP_007122079.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
gi|428252714|gb|AFZ18673.1| PAS domain S-box [Microcoleus sp. PCC 7113]
Length = 929
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 49/68 (72%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD VE+IR ++R G+ L NY+KDGT FWN LT++P++D SGK FI
Sbjct: 77 RFLQGHDTDPIAVEQIRQSIRTGQEVRVVLKNYRKDGTLFWNDLTISPVRDSSGKVTHFI 136
Query: 78 GMQVEVSK 85
G+Q ++++
Sbjct: 137 GVQTDITE 144
>gi|296283304|ref|ZP_06861302.1| hypothetical protein CbatJ_06766 [Citromicrobium bathyomarinum
JL354]
Length = 335
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 45/67 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD+ EV ++R+A+ N LLNY+KDGT FWN L + PI D GK + F
Sbjct: 65 RFLQGPKTDRAEVARVREAIENEDVVVVELLNYRKDGTEFWNALHLGPIYDAQGKLLYFF 124
Query: 78 GMQVEVS 84
G Q +VS
Sbjct: 125 GSQWDVS 131
>gi|251773125|gb|EES53679.1| diguanylate cyclase with PAS/PAC sensor [Leptospirillum
ferrodiazotrophum]
Length = 1354
Score = 78.6 bits (192), Expect = 7e-13, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 53/71 (74%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQG +D+ V++IR A+ +G+SY G++LNY+KDG+ FWNLLT++P+++ G F+
Sbjct: 786 RLLQGEGSDRETVDEIRQALDSGQSYRGQILNYRKDGSTFWNLLTLSPVRNSEGAITHFV 845
Query: 78 GMQVEVSKYTE 88
G+ ++S++ E
Sbjct: 846 GVLNDISEFRE 856
>gi|384418859|ref|YP_005628219.1| two-component system sensor-response regulator hybrid protein
[Xanthomonas oryzae pv. oryzicola BLS256]
gi|353461772|gb|AEQ96051.1| two-component system sensor-response regulator hybrid protein
[Xanthomonas oryzae pv. oryzicola BLS256]
Length = 502
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 21/122 (17%)
Query: 1 MSDPTGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFW 58
M+ + +E+IG C RFLQGPETD + +R ++ + +LNY+KDG+ FW
Sbjct: 25 MTGYSAEEVIGNNC-----RFLQGPETDPASISDVRQSIETRSEFATEVLNYRKDGSSFW 79
Query: 59 NLLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGS 118
N L V+P+ DD G + F G Q++VS+ + + ALR QK +ALG
Sbjct: 80 NALFVSPVFDDQGNLVYFFGSQLDVSRRRDA--EDALR------------QAQKMEALGQ 125
Query: 119 IT 120
+T
Sbjct: 126 LT 127
>gi|380512305|ref|ZP_09855712.1| histidine kinase [Xanthomonas sacchari NCPPB 4393]
Length = 544
Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats.
Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 21/122 (17%)
Query: 1 MSDPTGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFW 58
M+ + ELIG C RFLQGP+TD+ V +R+A+ +LNY+KDG+ FW
Sbjct: 65 MTGYSRDELIGNNC-----RFLQGPDTDRETVRNVREAIATHDEVAVEILNYRKDGSSFW 119
Query: 59 NLLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGS 118
N L ++P+ DD G+ + F G Q++VS+ + + ALR QK +ALG
Sbjct: 120 NALYISPVYDDRGELVYFFGSQLDVSRRRDA--EDALR------------QAQKMEALGQ 165
Query: 119 IT 120
+T
Sbjct: 166 LT 167
>gi|84624645|ref|YP_452017.1| histidine kinase [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|84368585|dbj|BAE69743.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae MAFF 311018]
Length = 540
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 21/122 (17%)
Query: 1 MSDPTGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFW 58
M+ + +E+IG C RFLQGPETD + +R ++ + +LNY+KDG+ FW
Sbjct: 63 MTGYSAEEVIGNNC-----RFLQGPETDPASISDVRQSIETRSEFATEVLNYRKDGSSFW 117
Query: 59 NLLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGS 118
N L V+P+ DD G + F G Q++VS+ + + ALR QK +ALG
Sbjct: 118 NALFVSPVFDDHGNLVYFFGSQLDVSRRRDA--EDALR------------QAQKMEALGQ 163
Query: 119 IT 120
+T
Sbjct: 164 LT 165
>gi|121716497|ref|XP_001275825.1| conserved hypothetical protein [Aspergillus clavatus NRRL 1]
gi|119403982|gb|EAW14399.1| conserved hypothetical protein [Aspergillus clavatus NRRL 1]
Length = 614
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 34/67 (50%), Positives = 47/67 (70%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T+ N V +IR+A+ G+ + LNY++DG+PF NLL P+ D SGK FI
Sbjct: 320 RFLQGPKTNPNSVRRIREAIEAGRHHSELFLNYRRDGSPFMNLLQCAPLCDSSGKIRYFI 379
Query: 78 GMQVEVS 84
G Q++VS
Sbjct: 380 GAQIDVS 386
>gi|422672416|ref|ZP_16731780.1| histidine kinase [Pseudomonas syringae pv. aceris str. M302273]
gi|330970154|gb|EGH70220.1| histidine kinase [Pseudomonas syringae pv. aceris str. M302273]
Length = 502
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 44/121 (36%), Positives = 69/121 (57%), Gaps = 19/121 (15%)
Query: 1 MSDPTGKELIGC-CLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ +E+IG C RFLQGP+TD+ V+ IRDA+ +LNY+KDG+ FWN
Sbjct: 25 MTGYASEEIIGSNC----RFLQGPDTDRTAVQSIRDAIDQRVDISTEILNYRKDGSSFWN 80
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
L ++P+ +D+G+ I F Q+++S+ + ++ALR QK +ALG +
Sbjct: 81 ALFISPVYNDAGELIYFFASQLDISRRRDA--EEALR------------QAQKMEALGQL 126
Query: 120 T 120
T
Sbjct: 127 T 127
>gi|422617051|ref|ZP_16685755.1| histidine kinase [Pseudomonas syringae pv. japonica str. M301072]
gi|330897435|gb|EGH28854.1| histidine kinase [Pseudomonas syringae pv. japonica str. M301072]
Length = 534
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 45/121 (37%), Positives = 68/121 (56%), Gaps = 19/121 (15%)
Query: 1 MSDPTGKELIGC-CLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ +E+IG C RFLQGP+TD+ V+ IRDAV +LNY+KDG+ FWN
Sbjct: 57 MTGYASEEIIGSNC----RFLQGPDTDRAAVQSIRDAVEERVDISTEILNYRKDGSSFWN 112
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
L ++P+ +D+G I F Q+++S+ + ++ALR QK +ALG +
Sbjct: 113 ALFISPVYNDAGDLIYFFASQLDISRRRDA--EEALR------------QAQKMEALGQL 158
Query: 120 T 120
T
Sbjct: 159 T 159
>gi|66045936|ref|YP_235777.1| histidine kinase [Pseudomonas syringae pv. syringae B728a]
gi|75501925|sp|Q4ZSY3.1|LOVHK_PSEU2 RecName: Full=Blue-light-activated protein; Includes: RecName:
Full=Blue-light-activated histidine kinase; Includes:
RecName: Full=Response regulator
gi|63256643|gb|AAY37739.1| PAS [Pseudomonas syringae pv. syringae B728a]
Length = 534
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 17/120 (14%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ +E+IG RFLQGP+TD+ V+ IRDA+ +LNY+KDG+ FWN
Sbjct: 57 MTGYASEEIIGSN---CRFLQGPDTDRTAVQSIRDAIDQRVDISTEILNYRKDGSSFWNA 113
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
L ++P+ +D+G+ I F Q+++S+ + ++ALR QK +ALG +T
Sbjct: 114 LFISPVYNDAGELIYFFASQLDISRRRDA--EEALR------------QAQKMEALGQLT 159
>gi|289661717|ref|ZP_06483298.1| histidine kinase [Xanthomonas campestris pv. vasculorum NCPPB 702]
Length = 541
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 21/122 (17%)
Query: 1 MSDPTGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFW 58
M+ + E+IG C RFLQGPETD + +R+++ + +LNY+KDG+ FW
Sbjct: 63 MTGYSADEVIGNNC-----RFLQGPETDPASISDVRESIEARSEFATEVLNYRKDGSSFW 117
Query: 59 NLLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGS 118
N L V+P+ DD G + F G Q++VS+ + + ALR QK +ALG
Sbjct: 118 NALFVSPVFDDKGNLVYFFGSQLDVSRRRDA--EDALR------------QAQKMEALGQ 163
Query: 119 IT 120
+T
Sbjct: 164 LT 165
>gi|393768622|ref|ZP_10357158.1| histidine kinase [Methylobacterium sp. GXF4]
gi|392725905|gb|EIZ83234.1| histidine kinase [Methylobacterium sp. GXF4]
Length = 524
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 36/87 (41%), Positives = 58/87 (66%), Gaps = 7/87 (8%)
Query: 1 MSDPTGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFW 58
M+ T +EL+G C RFLQGPETD+ V++IR A+ + + +LNY+K+G+ FW
Sbjct: 51 MTGYTPEELVGRNC-----RFLQGPETDRETVDQIRTAIAEKREFATEILNYRKNGSSFW 105
Query: 59 NLLTVTPIKDDSGKTIKFIGMQVEVSK 85
N L V+P+ + +G+ + F G Q++VS+
Sbjct: 106 NALFVSPVYNSAGELVYFFGSQLDVSR 132
>gi|424067645|ref|ZP_17805101.1| sensor y box histidine kinase/response regulator [Pseudomonas
syringae pv. avellanae str. ISPaVe013]
gi|408000214|gb|EKG40576.1| sensor y box histidine kinase/response regulator [Pseudomonas
syringae pv. avellanae str. ISPaVe013]
Length = 502
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 44/121 (36%), Positives = 69/121 (57%), Gaps = 19/121 (15%)
Query: 1 MSDPTGKELIGC-CLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ + +E+IG C RFLQGP+TD+ V+ IRDA+ +LNY+KDG+ FWN
Sbjct: 25 MTGYSSEEIIGSNC----RFLQGPDTDRAAVQSIRDAIEERVDISTEILNYRKDGSSFWN 80
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
L ++P+ +D+G I F Q+++S+ + ++ALR QK +ALG +
Sbjct: 81 ALFISPVYNDAGDLIYFFASQLDISRRRDA--EEALR------------QAQKMEALGQL 126
Query: 120 T 120
T
Sbjct: 127 T 127
>gi|406835512|ref|ZP_11095106.1| PAS domain S-box [Schlesneria paludicola DSM 18645]
Length = 925
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Query: 16 CSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIK 75
CS FLQGP TD++ ++ IRDA+ NG + G + NY+KDGT FWN LTV+P+ D+
Sbjct: 179 CS-FLQGPLTDQSTIQAIRDALNNGTDFTGEIFNYRKDGTAFWNELTVSPVYDEREYLTH 237
Query: 76 FIGMQVEVS 84
FIG+ ++S
Sbjct: 238 FIGVTRDIS 246
>gi|387766385|pdb|4EES|A Chain A, Crystal Structure Of Ilov
gi|387766386|pdb|4EET|B Chain B, Crystal Structure Of Ilov
gi|387766387|pdb|4EET|D Chain D, Crystal Structure Of Ilov
Length = 115
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 50/70 (71%)
Query: 17 SRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKF 76
+RFLQGPETD+ V+KIRDA+R+ + +L+NY K G FWNLL + P++D G+ F
Sbjct: 45 ARFLQGPETDQATVQKIRDAIRDQRETTVQLINYTKSGKKFWNLLHLQPVRDQKGELQYF 104
Query: 77 IGMQVEVSKY 86
IG+Q++ S +
Sbjct: 105 IGVQLDGSDH 114
>gi|188577558|ref|YP_001914487.1| histidine kinase [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188522010|gb|ACD59955.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 507
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 21/122 (17%)
Query: 1 MSDPTGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFW 58
M+ + +E+IG C RFLQGPETD + +R ++ + +LNY+KDG+ FW
Sbjct: 30 MTGYSAEEVIGNNC-----RFLQGPETDPASISDVRQSIETRSEFATEVLNYRKDGSSFW 84
Query: 59 NLLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGS 118
N L V+P+ DD G + F G Q++VS+ + + ALR QK +ALG
Sbjct: 85 NALFVSPVFDDHGNLVYFFGSQLDVSRRRDA--EDALR------------QAQKMEALGQ 130
Query: 119 IT 120
+T
Sbjct: 131 LT 132
>gi|448624188|ref|ZP_21670261.1| PAS-PAC-PAC sensing histidine kinase [Haloferax denitrificans ATCC
35960]
gi|445750155|gb|EMA01594.1| PAS-PAC-PAC sensing histidine kinase [Haloferax denitrificans ATCC
35960]
Length = 858
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 35/67 (52%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ETD VE +R+AV NG+S L NY+KDGTPFWN L ++P+ DD G+ F+
Sbjct: 192 RFLQGAETDSEPVETLREAVENGESAAVSLTNYRKDGTPFWNELKISPVYDD-GELTHFV 250
Query: 78 GMQVEVS 84
G Q + +
Sbjct: 251 GFQTDAT 257
>gi|237797307|ref|ZP_04585768.1| histidine kinase [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331020157|gb|EGI00214.1| histidine kinase [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 534
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 70/120 (58%), Gaps = 17/120 (14%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ + E+IG C RFLQGP+TD+ V+ IR+A+++ +LNY+KDG+ FWN
Sbjct: 57 MTGYSASEIIGTN--C-RFLQGPDTDRAVVQSIRNAIQDRVDISTEILNYRKDGSTFWNA 113
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
L ++P+ +D+G I F Q+++S+ + ++ALR QK +ALG +T
Sbjct: 114 LFISPVYNDAGDLIYFFASQLDISRRKDA--EEALR------------QAQKMEALGQLT 159
>gi|424072283|ref|ZP_17809704.1| sensor y box histidine kinase/response regulator [Pseudomonas
syringae pv. avellanae str. ISPaVe037]
gi|407997937|gb|EKG38366.1| sensor y box histidine kinase/response regulator [Pseudomonas
syringae pv. avellanae str. ISPaVe037]
Length = 534
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 17/120 (14%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ + +E+IG RFLQGP+TD+ V+ IRDA+ +LNY+KDG+ FWN
Sbjct: 57 MTGYSSEEIIGSN---CRFLQGPDTDRAAVQSIRDAIEERVDISTEILNYRKDGSSFWNA 113
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
L ++P+ +D+G I F Q+++S+ + ++ALR QK +ALG +T
Sbjct: 114 LFISPVYNDAGDLIYFFASQLDISRRRDA--EEALR------------QAQKMEALGQLT 159
>gi|422641750|ref|ZP_16705172.1| histidine kinase, partial [Pseudomonas syringae Cit 7]
gi|330954136|gb|EGH54396.1| histidine kinase [Pseudomonas syringae Cit 7]
Length = 266
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 68/120 (56%), Gaps = 17/120 (14%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ +E+IG C RFLQGP+TD+ V+ IRDA+ +LNY+KDG+ FWN
Sbjct: 57 MTGYASEEIIGSN--C-RFLQGPDTDRAVVKSIRDAIDERVDISTEILNYRKDGSTFWNA 113
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
L ++P+ +D+G I F Q+++S+ + ++ALR QK +ALG +T
Sbjct: 114 LFISPVYNDAGDLIYFFASQLDISRRRDA--EEALR------------QAQKMEALGQLT 159
>gi|448450276|ref|ZP_21592175.1| bacterio-opsin activator [Halorubrum litoreum JCM 13561]
gi|445812128|gb|EMA62124.1| bacterio-opsin activator [Halorubrum litoreum JCM 13561]
Length = 667
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 40/111 (36%), Positives = 58/111 (52%), Gaps = 5/111 (4%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD VE+I DA+ N + + NY++DGTPFWN LTV PI D+ G ++
Sbjct: 189 RFLQGPGTDPETVEEIGDAIANEEEATVEIRNYRRDGTPFWNELTVAPIYDEDGDLAHYV 248
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKR 128
G Q ++S E R L+ + R ++ LG + + + R
Sbjct: 249 GFQNDISDRKEAERLAEERAEKLAT-----ERRSLDRVLGRVNGLFSDISR 294
>gi|395493461|ref|ZP_10425040.1| histidine kinase [Sphingomonas sp. PAMC 26617]
Length = 536
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 36/89 (40%), Positives = 57/89 (64%), Gaps = 3/89 (3%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ + E+IG + RFLQGPETD++ V ++R A+ + +LNY+K+G+ FWN
Sbjct: 70 MTGYSDAEIIG---INCRFLQGPETDRDSVAQVRRAIAERQEVSVEILNYRKNGSTFWNA 126
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSKYTEG 89
L ++P+ D+SGK I F Q++VS+ E
Sbjct: 127 LFISPVFDESGKLIYFFASQLDVSRRREA 155
>gi|155212693|gb|ABT17414.1| bacterio-opsin activator protein [Halorubrum sp. TP009]
Length = 669
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 40/111 (36%), Positives = 58/111 (52%), Gaps = 5/111 (4%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD VE+I DA+ N + + NY++DGTPFWN LTV PI D+ G ++
Sbjct: 191 RFLQGPGTDPETVEEIGDAIANEEEATVEIRNYRRDGTPFWNELTVAPIYDEDGDLAHYV 250
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKR 128
G Q ++S E R L+ + R ++ LG + + + R
Sbjct: 251 GFQNDISDRKEAERLAEERAEKLAT-----ERRSLDRVLGRVNGLFSDISR 296
>gi|345562874|gb|EGX45882.1| hypothetical protein AOL_s00112g71 [Arthrobotrys oligospora ATCC
24927]
Length = 892
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 46/67 (68%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T ++ V ++RDAVR G LNYK+DGTPF NL+ V P+ D G+ FI
Sbjct: 500 RFLQGPKTQRHSVARLRDAVRQGHEITECFLNYKRDGTPFLNLVMVAPLLDSKGQVRYFI 559
Query: 78 GMQVEVS 84
G Q++V+
Sbjct: 560 GAQIDVT 566
>gi|448428454|ref|ZP_21584266.1| bacterio-opsin activator [Halorubrum terrestre JCM 10247]
gi|448507510|ref|ZP_21615021.1| bacterio-opsin activator [Halorubrum distributum JCM 9100]
gi|448523274|ref|ZP_21618627.1| bacterio-opsin activator [Halorubrum distributum JCM 10118]
gi|445676419|gb|ELZ28941.1| bacterio-opsin activator [Halorubrum terrestre JCM 10247]
gi|445698465|gb|ELZ50509.1| bacterio-opsin activator [Halorubrum distributum JCM 9100]
gi|445701673|gb|ELZ53649.1| bacterio-opsin activator [Halorubrum distributum JCM 10118]
Length = 667
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 40/111 (36%), Positives = 58/111 (52%), Gaps = 5/111 (4%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD VE+I DA+ N + + NY++DGTPFWN LTV PI D+ G ++
Sbjct: 189 RFLQGPGTDPETVEEIGDAIANEEEATVEIRNYRRDGTPFWNELTVAPIYDEDGDLAHYV 248
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKR 128
G Q ++S E R L+ + R ++ LG + + + R
Sbjct: 249 GFQNDISDRKEAERLAEERAEKLAT-----ERRSLDRVLGRVNGLFSDISR 294
>gi|448481617|ref|ZP_21604968.1| bacterio-opsin activator [Halorubrum arcis JCM 13916]
gi|445821870|gb|EMA71654.1| bacterio-opsin activator [Halorubrum arcis JCM 13916]
Length = 667
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 40/111 (36%), Positives = 58/111 (52%), Gaps = 5/111 (4%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD VE+I DA+ N + + NY++DGTPFWN LTV PI D+ G ++
Sbjct: 189 RFLQGPGTDPETVEEIGDAIANEEEATVEIRNYRRDGTPFWNELTVAPIYDEDGDLAHYV 248
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKR 128
G Q ++S E R L+ + R ++ LG + + + R
Sbjct: 249 GFQNDISDRKEAERLAEERAEKLAT-----ERRSLDRVLGRVNGLFSDISR 294
>gi|440723539|ref|ZP_20903902.1| histidine kinase [Pseudomonas syringae BRIP34876]
gi|440728023|ref|ZP_20908246.1| histidine kinase [Pseudomonas syringae BRIP34881]
gi|443643766|ref|ZP_21127616.1| Signal transduction histidine kinase [Pseudomonas syringae pv.
syringae B64]
gi|440359514|gb|ELP96822.1| histidine kinase [Pseudomonas syringae BRIP34876]
gi|440362552|gb|ELP99739.1| histidine kinase [Pseudomonas syringae BRIP34881]
gi|443283783|gb|ELS42788.1| Signal transduction histidine kinase [Pseudomonas syringae pv.
syringae B64]
Length = 534
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 44/121 (36%), Positives = 68/121 (56%), Gaps = 19/121 (15%)
Query: 1 MSDPTGKELIGC-CLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ +E+IG C RFLQGP+TD+ V+ IRDA+ +LNY+KDG+ FWN
Sbjct: 57 MTGYASEEIIGSNC----RFLQGPDTDRAAVQSIRDAIEERVDISTEILNYRKDGSSFWN 112
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
L ++P+ +D+G I F Q+++S+ + ++ALR QK +ALG +
Sbjct: 113 ALFISPVYNDAGDLIYFFASQLDISRRRDA--EEALR------------QAQKMEALGQL 158
Query: 120 T 120
T
Sbjct: 159 T 159
>gi|422631639|ref|ZP_16696822.1| histidine kinase [Pseudomonas syringae pv. pisi str. 1704B]
gi|330941469|gb|EGH44279.1| histidine kinase [Pseudomonas syringae pv. pisi str. 1704B]
Length = 534
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 44/121 (36%), Positives = 68/121 (56%), Gaps = 19/121 (15%)
Query: 1 MSDPTGKELIGC-CLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ +E+IG C RFLQGP+TD+ V+ IRDA+ +LNY+KDG+ FWN
Sbjct: 57 MTGYASEEIIGSNC----RFLQGPDTDRAAVQSIRDAIEERVDISTEILNYRKDGSSFWN 112
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
L ++P+ +D+G I F Q+++S+ + ++ALR QK +ALG +
Sbjct: 113 ALFISPVYNDAGDLIYFFASQLDISRRRDA--EEALR------------QAQKMEALGQL 158
Query: 120 T 120
T
Sbjct: 159 T 159
>gi|302797635|ref|XP_002980578.1| hypothetical protein SELMODRAFT_112753 [Selaginella moellendorffii]
gi|300151584|gb|EFJ18229.1| hypothetical protein SELMODRAFT_112753 [Selaginella moellendorffii]
Length = 374
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 57/86 (66%), Gaps = 7/86 (8%)
Query: 5 TGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLT 62
T +E+IG C RFLQGP+TD +E++R ++ G++ R+LNY+K+ PFWN L
Sbjct: 257 TREEVIGRNC-----RFLQGPDTDLAPIEELRSSISEGQTCTVRILNYRKNKEPFWNSLH 311
Query: 63 VTPIKDDSGKTIKFIGMQVEVSKYTE 88
++P+++ SGK + G+QV VS +E
Sbjct: 312 ISPVRNSSGKVAYYAGIQVAVSHSSE 337
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI-KDDSGKTIKF 76
RFLQG +TDK + +IR+A+R + ++LNY K G PFWNL + P+ G+ + F
Sbjct: 67 RFLQGRDTDKRAIVEIREAIREERDCQIKILNYTKAGKPFWNLFHLAPVFSQQDGRVVHF 126
Query: 77 IGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDAR--------------QKEKALGSITEV 122
+G+Q+ +S D L LS + ++ K++A ++ V
Sbjct: 127 VGVQLPISSKLAARKDGHLTGLELSFDELEFEEHFDNPSCKNYHLSEEDKQRAFAAVKAV 186
Query: 123 IQTVKRS 129
+Q + S
Sbjct: 187 LQELANS 193
>gi|420250294|ref|ZP_14753516.1| PAS domain S-box [Burkholderia sp. BT03]
gi|398061555|gb|EJL53345.1| PAS domain S-box [Burkholderia sp. BT03]
Length = 533
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 34/81 (41%), Positives = 54/81 (66%)
Query: 5 TGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVT 64
TG EL RFLQGPETD+ ++++RDAV + + +LNY+KDG+ FWN L ++
Sbjct: 59 TGYELPEIIGTNCRFLQGPETDRATIDEVRDAVAHRREIATEVLNYRKDGSTFWNALFIS 118
Query: 65 PIKDDSGKTIKFIGMQVEVSK 85
P+ ++ G+ + F G Q++VS+
Sbjct: 119 PVFNEQGELVYFFGSQLDVSR 139
>gi|422580175|ref|ZP_16655643.1| histidine kinase, partial [Pseudomonas syringae pv. aesculi str.
0893_23]
gi|330870611|gb|EGH05320.1| histidine kinase [Pseudomonas syringae pv. aesculi str. 0893_23]
Length = 446
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 68/120 (56%), Gaps = 17/120 (14%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ + +E+IG C RFLQGPETD+ V+ IR+A+ +LNY+KDG+ FWN
Sbjct: 57 MTGYSSEEIIGTN--C-RFLQGPETDRAVVQSIREAIDERVDISTEILNYRKDGSTFWNA 113
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
L ++P+ +D+G I F Q+++S+ + + ALR QK +ALG +T
Sbjct: 114 LFISPVYNDAGDLIYFFASQLDISRRRDA--EDALR------------QAQKMEALGQLT 159
>gi|28870075|ref|NP_792694.1| sensory box histidine kinase/response regulator [Pseudomonas
syringae pv. tomato str. DC3000]
gi|213966898|ref|ZP_03395048.1| sensory box histidine kinase/response regulator [Pseudomonas
syringae pv. tomato T1]
gi|301381580|ref|ZP_07229998.1| histidine kinase [Pseudomonas syringae pv. tomato Max13]
gi|302061664|ref|ZP_07253205.1| histidine kinase [Pseudomonas syringae pv. tomato K40]
gi|302134348|ref|ZP_07260338.1| histidine kinase [Pseudomonas syringae pv. tomato NCPPB 1108]
gi|81730912|sp|Q881J7.1|LOVHK_PSESM RecName: Full=Blue-light-activated protein; Includes: RecName:
Full=Blue-light-activated histidine kinase; AltName:
Full=PS-LOV-histidine kinase; Short=PS-LOV-HK; Includes:
RecName: Full=Response regulator
gi|28853321|gb|AAO56389.1| sensory box histidine kinase/response regulator [Pseudomonas
syringae pv. tomato str. DC3000]
gi|213928220|gb|EEB61765.1| sensory box histidine kinase/response regulator [Pseudomonas
syringae pv. tomato T1]
Length = 534
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 43/121 (35%), Positives = 68/121 (56%), Gaps = 19/121 (15%)
Query: 1 MSDPTGKELIGC-CLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T +E++G C RFLQGP+TD V+ IRDA+ ++NY+KDG+ FWN
Sbjct: 57 MTGYTAEEILGTNC----RFLQGPDTDPAVVQSIRDAIAQRNDISAEIINYRKDGSSFWN 112
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
L ++P+ +D+G I F Q+++S+ + ++ALR QK +ALG +
Sbjct: 113 ALFISPVYNDAGDLIYFFASQLDISRRKDA--EEALR------------QAQKMEALGQL 158
Query: 120 T 120
T
Sbjct: 159 T 159
>gi|289626532|ref|ZP_06459486.1| histidine kinase, partial [Pseudomonas syringae pv. aesculi str.
NCPPB 3681]
gi|289649213|ref|ZP_06480556.1| histidine kinase [Pseudomonas syringae pv. aesculi str. 2250]
Length = 452
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 68/120 (56%), Gaps = 17/120 (14%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ + +E+IG C RFLQGPETD+ V+ IR+A+ +LNY+KDG+ FWN
Sbjct: 57 MTGYSSEEIIGTN--C-RFLQGPETDRAVVQSIREAIDERVDISTEILNYRKDGSTFWNA 113
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
L ++P+ +D+G I F Q+++S+ + + ALR QK +ALG +T
Sbjct: 114 LFISPVYNDAGDLIYFFASQLDISRRRDA--EDALR------------QAQKMEALGQLT 159
>gi|302790163|ref|XP_002976849.1| hypothetical protein SELMODRAFT_443359 [Selaginella moellendorffii]
gi|300155327|gb|EFJ21959.1| hypothetical protein SELMODRAFT_443359 [Selaginella moellendorffii]
Length = 394
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 57/86 (66%), Gaps = 7/86 (8%)
Query: 5 TGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLT 62
T +E+IG C RFLQGP+TD +E++R ++ G++ R+LNY+K+ PFWN L
Sbjct: 277 TREEVIGRNC-----RFLQGPDTDLAPIEELRSSISEGQTCTIRILNYRKNKEPFWNSLH 331
Query: 63 VTPIKDDSGKTIKFIGMQVEVSKYTE 88
++P+++ SGK + G+QV VS +E
Sbjct: 332 ISPVRNSSGKVAYYAGIQVAVSHSSE 357
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI-KDDSGKTIKF 76
RFLQG +TDK + +IR+A+R + ++LNY K G PFWNL + P+ G+ + F
Sbjct: 87 RFLQGRDTDKRAIVEIREAIREERDCQIKILNYTKAGKPFWNLFHLAPVFSQQDGRVVHF 146
Query: 77 IGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDAR--------------QKEKALGSITEV 122
+G+Q+ +S D L LS + ++ K++A ++ V
Sbjct: 147 VGVQLPISSKVAARKDGHLTGLELSFDELEFEEHFDNPSCKNYHLSEEDKQRAFAAVKAV 206
Query: 123 IQTVKRS 129
+Q + S
Sbjct: 207 LQELANS 213
>gi|429854006|gb|ELA29042.1| hypothetical protein CGGC5_1230 [Colletotrichum gloeosporioides
Nara gc5]
Length = 638
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 35/75 (46%), Positives = 50/75 (66%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD++ +++IR+AV + +LNY++DGTPFWNLL P+ D SGK ++
Sbjct: 305 RFLQGGLTDQDTIKRIREAVVQEEESLELILNYRRDGTPFWNLLFTCPLTDSSGKVRYYL 364
Query: 78 GMQVEVSKYTEGVND 92
G QV+VS + G D
Sbjct: 365 GGQVDVSDHVTGYKD 379
>gi|300868645|ref|ZP_07113257.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
gi|300333339|emb|CBN58449.1| putative Diguanylate kinase [Oscillatoria sp. PCC 6506]
Length = 1140
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 50/72 (69%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD +E++R+A+R G++ L NY+KDGT FWN L ++P++D G+ FI
Sbjct: 108 RFLQGPDTDPAALEELRNALREGRACEVVLKNYRKDGTHFWNKLAISPVRDKKGQLTHFI 167
Query: 78 GMQVEVSKYTEG 89
G+Q ++S E
Sbjct: 168 GVQSDISYRIEA 179
>gi|53804038|ref|YP_114126.1| sensory box protein [Methylococcus capsulatus str. Bath]
gi|53757799|gb|AAU92090.1| sensory box protein [Methylococcus capsulatus str. Bath]
Length = 853
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/68 (48%), Positives = 49/68 (72%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQG TD VE+IR+A+R G+S + NY+KDGTPFWN L ++P+KD++G +I
Sbjct: 532 RMLQGAGTDPASVEEIREAIRAGRSCRLTIRNYRKDGTPFWNELLISPVKDEAGVITHYI 591
Query: 78 GMQVEVSK 85
G+Q +V++
Sbjct: 592 GIQTDVTE 599
Score = 40.4 bits (93), Expect = 0.28, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 32 KIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVN 91
++R+ +R+G ++ G + + +++G +W L ++TPI D G+ ++ +Q ++ TE
Sbjct: 294 RLREVIRSGTAWRGEVQDRRRNGEVYWALESITPILDGHGEATHYLLIQQDI---TEQKR 350
Query: 92 DK 93
DK
Sbjct: 351 DK 352
>gi|440745642|ref|ZP_20924932.1| histidine kinase [Pseudomonas syringae BRIP39023]
gi|440372275|gb|ELQ09083.1| histidine kinase [Pseudomonas syringae BRIP39023]
Length = 502
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 17/120 (14%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ +E+IG RFLQGPETD+ V+ IRDA+ +LNY+KDG+ FWN
Sbjct: 25 MTGYASEEIIGSN---CRFLQGPETDRAVVKSIRDAIDERVDISTEILNYRKDGSTFWNA 81
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
L ++P+ +D+G I F Q+++S+ + ++ALR QK +ALG +T
Sbjct: 82 LFISPVYNDAGDLIYFFASQLDISRRRDA--EEALR------------QAQKMEALGQLT 127
>gi|158334589|ref|YP_001515761.1| PAS sensor diguanylate cyclase/phophodiesterase [Acaryochloris
marina MBIC11017]
gi|158304830|gb|ABW26447.1| PAS sensor diguanylate cyclase/phophodiesterase, putative
[Acaryochloris marina MBIC11017]
Length = 935
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 50/70 (71%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78
FLQGP+TD N V++IR A++N +++ G +LNY+K G PFWNLL + P+ + G+ +G
Sbjct: 190 FLQGPKTDPNTVDEIRQALKNDQTFEGEILNYRKMGQPFWNLLRIKPLTNAQGEVHFLVG 249
Query: 79 MQVEVSKYTE 88
+Q ++++ E
Sbjct: 250 IQTDITQQKE 259
>gi|300865640|ref|ZP_07110413.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
gi|300336367|emb|CBN55563.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
Length = 631
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 80/134 (59%), Gaps = 14/134 (10%)
Query: 1 MSDPTGKELIGC-CLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ + +E+IG C R LQG +TD + +IR+A+ N L NY+KDGT FWN
Sbjct: 241 MTGYSHEEIIGHNC----RLLQGNDTDPEAINQIREALHNQTECTVVLKNYRKDGTTFWN 296
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
L ++P++D GK FIG+Q++V+K+ E ++AL+ +S++ R A + E AL +
Sbjct: 297 QLAISPVRDRKGKLTHFIGIQMDVTKHKEA--EEALQ---ISEARSREQAAKLELALKQL 351
Query: 120 ----TEVIQTVKRS 129
++++Q+ K S
Sbjct: 352 QQTHSQLVQSEKMS 365
>gi|71733399|ref|YP_274680.1| histidine kinase [Pseudomonas syringae pv. phaseolicola 1448A]
gi|71553952|gb|AAZ33163.1| sensory box histidine kinase/response regulator [Pseudomonas
syringae pv. phaseolicola 1448A]
Length = 507
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 68/120 (56%), Gaps = 17/120 (14%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ + +E+IG C RFLQGPETD+ V+ IR+A+ +LNY+KDG+ FWN
Sbjct: 30 MTGYSSEEIIGTN--C-RFLQGPETDRAVVQSIREAIDERVDISTEILNYRKDGSTFWNA 86
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
L ++P+ +D+G I F Q+++S+ + + ALR QK +ALG +T
Sbjct: 87 LFISPVYNDAGDLIYFFASQLDISRRRDA--EDALR------------QAQKMEALGQLT 132
>gi|325925085|ref|ZP_08186505.1| PAS domain S-box [Xanthomonas perforans 91-118]
gi|325544501|gb|EGD15864.1| PAS domain S-box [Xanthomonas perforans 91-118]
Length = 540
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/103 (36%), Positives = 58/103 (56%), Gaps = 14/103 (13%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD + +R ++ + + +LNY+KDG+ FWN L ++P+ DD G + F
Sbjct: 77 RFLQGPETDPASISDVRASIESRSEFATEVLNYRKDGSSFWNALFISPVFDDKGNLVYFF 136
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
G Q++VS+ + + ALR QK +ALG +T
Sbjct: 137 GSQLDVSRRRDA--EDALR------------QAQKMEALGQLT 165
>gi|346725425|ref|YP_004852094.1| histidine kinase [Xanthomonas axonopodis pv. citrumelo F1]
gi|346650172|gb|AEO42796.1| histidine kinase [Xanthomonas axonopodis pv. citrumelo F1]
Length = 540
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/103 (36%), Positives = 58/103 (56%), Gaps = 14/103 (13%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD + +R ++ + + +LNY+KDG+ FWN L ++P+ DD G + F
Sbjct: 77 RFLQGPETDPASISDVRASIESRSEFATEVLNYRKDGSSFWNALFISPVFDDKGNLVYFF 136
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
G Q++VS+ + + ALR QK +ALG +T
Sbjct: 137 GSQLDVSRRRDA--EDALR------------QAQKMEALGQLT 165
>gi|448488460|ref|ZP_21607296.1| bacterio-opsin activator [Halorubrum californiensis DSM 19288]
gi|445696150|gb|ELZ48243.1| bacterio-opsin activator [Halorubrum californiensis DSM 19288]
Length = 667
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPET VE++ +A+ N + + NY++DGTPFWN LTV PI D++G ++
Sbjct: 189 RFLQGPETAPETVEEVGEAIANEEEVTVEIRNYRRDGTPFWNELTVAPIYDEAGDLAHYV 248
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKR 128
G Q ++S E R L+ + R ++ LG + ++ + R
Sbjct: 249 GFQNDISDRKEAERLAEERAEKLAT-----ERRSLDRVLGRVNGLLSEISR 294
>gi|294626164|ref|ZP_06704770.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|294667549|ref|ZP_06732764.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|292599516|gb|EFF43647.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292602669|gb|EFF46105.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
Length = 540
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 37/103 (35%), Positives = 59/103 (57%), Gaps = 14/103 (13%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD + +R+++ + + +LNY+KDG+ FWN L ++P+ DD G + F
Sbjct: 77 RFLQGPDTDPASISDVRESIESRSEFATEVLNYRKDGSSFWNALFISPVFDDKGNLVYFF 136
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
G Q++VS+ + + ALR QK +ALG +T
Sbjct: 137 GSQLDVSRRRDA--EDALR------------QAQKMEALGQLT 165
>gi|387766384|pdb|4EER|A Chain A, Crystal Structure Of Lov2 Domain Of Arabidopsis Thaliana
Phototropin 2 C426a Mutant
Length = 115
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 49/71 (69%)
Query: 17 SRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKF 76
+RFLQGPETD+ V+KIRDA+R+ + +L+NY K G FWNL + P++D G+ F
Sbjct: 45 ARFLQGPETDQATVQKIRDAIRDQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYF 104
Query: 77 IGMQVEVSKYT 87
IG+Q++ S +
Sbjct: 105 IGVQLDGSDHV 115
>gi|448503538|ref|ZP_21613167.1| bacterio-opsin activator [Halorubrum coriense DSM 10284]
gi|445691739|gb|ELZ43922.1| bacterio-opsin activator [Halorubrum coriense DSM 10284]
Length = 668
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 40/111 (36%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD VE+I +A+ N + + NY++DGTPFWN LTV PI D+ G ++
Sbjct: 191 RFLQGPGTDPETVEEIAEALGNEEEVTVEIRNYRRDGTPFWNELTVAPIYDEDGGLAHYV 250
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKR 128
G Q +VS+ E R L+ + R ++ LG + ++ + R
Sbjct: 251 GFQNDVSERKEAERLAQERAEKLAT-----ERRSLDRVLGRVNGLLSDISR 296
>gi|149286420|gb|ABR23225.1| hisactophilin C49S mutant/phototropin PHY3 fusion protein
[Expression vector pNCO-HISACT-(C49S)-ASLOV2-syn]
Length = 288
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V KIRDA+ N +L+NY K G FWNL + P++D G FI
Sbjct: 180 RFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFI 239
Query: 78 GMQVEVSKYTEGVNDKALR 96
G+Q++ TE V D A R
Sbjct: 240 GVQLDG---TEHVRDAAER 255
>gi|289668671|ref|ZP_06489746.1| histidine kinase [Xanthomonas campestris pv. musacearum NCPPB 4381]
Length = 541
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 43/122 (35%), Positives = 66/122 (54%), Gaps = 21/122 (17%)
Query: 1 MSDPTGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFW 58
M+ + E+IG C RFLQGPETD + +R+++ + +LNY+KDG+ FW
Sbjct: 63 MTGYSADEVIGNNC-----RFLQGPETDPASISDVRESIEARSEFATEVLNYRKDGSSFW 117
Query: 59 NLLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGS 118
N L V+P+ DD G + + G Q++VS+ + + ALR QK +ALG
Sbjct: 118 NALFVSPVFDDKGNLVYYFGSQLDVSRRRDA--EDALR------------QAQKMEALGQ 163
Query: 119 IT 120
+T
Sbjct: 164 LT 165
>gi|428311734|ref|YP_007122711.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
gi|428253346|gb|AFZ19305.1| PAS domain S-box [Microcoleus sp. PCC 7113]
Length = 483
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 53/79 (67%), Gaps = 2/79 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ET + V ++R A++ G+ LLNY+KDGTPFWN LT++PI D+ K F+
Sbjct: 195 RFLQGKETSQPAVAQLRAAIKAGEHCAVTLLNYRKDGTPFWNELTISPIYDEDKKLTHFV 254
Query: 78 GMQVEVSKYTEGVNDKALR 96
G+Q ++S + ++ALR
Sbjct: 255 GIQSDISDRIKA--EQALR 271
>gi|254410683|ref|ZP_05024462.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196182889|gb|EDX77874.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 483
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 54/79 (68%), Gaps = 2/79 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +T + V+++R A++ G++ LLNY+KDGTPFWN LT++PI DD F+
Sbjct: 195 RFLQGKDTSQPAVDQLRAAIKAGENCTVTLLNYRKDGTPFWNELTISPIYDDHNNLTHFV 254
Query: 78 GMQVEVSKYTEGVNDKALR 96
G+Q ++S + ++ALR
Sbjct: 255 GIQSDISDRIKA--EQALR 271
>gi|404253790|ref|ZP_10957758.1| histidine kinase [Sphingomonas sp. PAMC 26621]
Length = 536
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 35/89 (39%), Positives = 57/89 (64%), Gaps = 3/89 (3%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ + E+IG + RFLQGPETD++ V ++R A+ + +LNY+K+G+ FWN
Sbjct: 70 MTGYSDAEIIG---INCRFLQGPETDRDSVAQVRRAIAERQEVSVEILNYRKNGSTFWNA 126
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSKYTEG 89
L ++P+ D++GK I F Q++VS+ E
Sbjct: 127 LFISPVFDEAGKLIYFFASQLDVSRRREA 155
>gi|340780976|ref|YP_004747583.1| PAS/PAC and GAF sensor-containing diguanylate
cyclase/phosphodiesterase [Acidithiobacillus caldus
SM-1]
gi|340555129|gb|AEK56883.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Acidithiobacillus caldus SM-1]
Length = 913
Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/73 (43%), Positives = 49/73 (67%), Gaps = 2/73 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD + + DA+ G+ + G +LNY++DGTPFWN L ++P++D G F+
Sbjct: 174 RFLQGPDTDPATRQSLHDALAEGRVFHGDILNYRRDGTPFWNALNISPVRDAQGHITHFV 233
Query: 78 GMQ--VEVSKYTE 88
+Q V +S+ TE
Sbjct: 234 SVQRDVTLSRRTE 246
>gi|189194814|ref|XP_001933745.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187979624|gb|EDU46250.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 651
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 58/99 (58%), Gaps = 10/99 (10%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T K+ V++I +AV G+ LLNY++DG+PF NL+ P+ D G FI
Sbjct: 278 RFLQGPKTQKHAVKRIAEAVSKGQEISEILLNYRRDGSPFLNLVMTAPLMDHRGAARYFI 337
Query: 78 GMQVEVSKYTEG----------VNDKALRPNGLSKSLIR 106
G Q+++S EG +ND+ + +S+ LIR
Sbjct: 338 GCQIDISHLMEGGRGLESFEQLLNDQEMVMKPVSEPLIR 376
>gi|148907121|gb|ABR16704.1| unknown [Picea sitchensis]
Length = 272
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 57/87 (65%), Gaps = 4/87 (4%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
MS + +E++G + RFLQGP+TD+ V IR+A+R KS +LNYKK+GT FWNL
Sbjct: 67 MSGYSTEEVVGRNV---RFLQGPDTDRRTVLTIREAIREEKSCQVSILNYKKNGTAFWNL 123
Query: 61 LTVTPI-KDDSGKTIKFIGMQVEVSKY 86
+ P+ + G+ I F+G+Q +SK+
Sbjct: 124 FHLAPVFSEGDGRVIHFVGVQTPISKF 150
>gi|388578800|gb|EIM19136.1| hypothetical protein WALSEDRAFT_10239, partial [Wallemia sebi CBS
633.66]
Length = 106
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 43/66 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP T V++IRDA+ NG S LLNY+ DGTPF+ LL + P+ D GK FI
Sbjct: 41 RFLQGPGTAPQSVQRIRDALNNGVSITELLLNYRADGTPFFCLLNMIPLHDSQGKIAYFI 100
Query: 78 GMQVEV 83
G QV V
Sbjct: 101 GGQVNV 106
>gi|163848652|ref|YP_001636696.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
gi|222526588|ref|YP_002571059.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
gi|163669941|gb|ABY36307.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
gi|222450467|gb|ACM54733.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
Length = 915
Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 35/79 (44%), Positives = 53/79 (67%), Gaps = 5/79 (6%)
Query: 7 KELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTP 65
+E+IG CL FLQGP TD+ V +I +A+ + RLLNY+KDG PFW+ + ++P
Sbjct: 74 EEVIGRHCL----FLQGPGTDQAAVTRICEAIAAARPVHERLLNYRKDGQPFWSQIAISP 129
Query: 66 IKDDSGKTIKFIGMQVEVS 84
++DD G+ FIG+Q +V+
Sbjct: 130 VRDDQGRVTAFIGLQTDVT 148
>gi|255019342|ref|ZP_05291462.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Acidithiobacillus caldus ATCC 51756]
gi|254971214|gb|EET28656.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Acidithiobacillus caldus ATCC 51756]
Length = 913
Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/73 (43%), Positives = 49/73 (67%), Gaps = 2/73 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD + + DA+ G+ + G +LNY++DGTPFWN L ++P++D G F+
Sbjct: 174 RFLQGPDTDPATRQSLHDALAEGRVFHGDILNYRQDGTPFWNALNISPVRDAQGHITHFV 233
Query: 78 GMQ--VEVSKYTE 88
+Q V +S+ TE
Sbjct: 234 SVQRDVTLSRRTE 246
>gi|298708956|emb|CBJ30909.1| aureochrome 4 [Ectocarpus siliculosus]
Length = 285
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD ++ IR V G+ L+NYK DGTPFWN V ++DD+GK + F+
Sbjct: 186 RFLQGPGTDPRAIDIIRRGVAEGRDTSVCLMNYKADGTPFWNQFFVAALRDDTGKIVNFV 245
Query: 78 GMQVEVSKYTEGVNDKA-LRPNGLSKSLIRYD 108
G+Q EV + + + + LR L L+R D
Sbjct: 246 GVQGEVHEEAQDRDFRERLRKIPLPDELMRDD 277
>gi|448278451|gb|AGE44112.1| miniSOG [synthetic construct]
Length = 106
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 47/66 (71%)
Query: 17 SRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKF 76
RFLQGPETD+ V+KIRDA+R+ + +L+NY K G FWNLL + P++D G+ F
Sbjct: 40 GRFLQGPETDQATVQKIRDAIRDQREITVQLINYTKSGKKFWNLLHLQPMRDQKGELQYF 99
Query: 77 IGMQVE 82
IG+Q++
Sbjct: 100 IGVQLD 105
>gi|424912642|ref|ZP_18336019.1| PAS domain S-box [Rhizobium leguminosarum bv. viciae USDA 2370]
gi|392848673|gb|EJB01196.1| PAS domain S-box [Rhizobium leguminosarum bv. viciae USDA 2370]
Length = 369
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 50/78 (64%), Gaps = 5/78 (6%)
Query: 8 ELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI 66
ELIG C R LQGP+TD + V K+RDAV + K +LNY+KDG+ FWN L V+P+
Sbjct: 68 ELIGRNC----RLLQGPQTDPDAVTKLRDAVASQKDIAVDILNYRKDGSKFWNALFVSPV 123
Query: 67 KDDSGKTIKFIGMQVEVS 84
+D SG I F Q++ +
Sbjct: 124 RDVSGAVIYFFASQLDFT 141
>gi|332186175|ref|ZP_08387921.1| sensory box protein [Sphingomonas sp. S17]
gi|332013990|gb|EGI56049.1| sensory box protein [Sphingomonas sp. S17]
Length = 524
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 48/72 (66%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD++ V +IR AV LLNY+K+G+ FWN L V+P+ DD+G+ + F
Sbjct: 67 RFLQGPETDRDVVAQIRAAVERRDEIAVELLNYRKNGSTFWNALFVSPVYDDAGELVYFF 126
Query: 78 GMQVEVSKYTEG 89
Q+++S+ E
Sbjct: 127 SSQLDISRRREA 138
>gi|408785836|ref|ZP_11197577.1| sensory box histidine kinase [Rhizobium lupini HPC(L)]
gi|408488304|gb|EKJ96617.1| sensory box histidine kinase [Rhizobium lupini HPC(L)]
Length = 369
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 50/78 (64%), Gaps = 5/78 (6%)
Query: 8 ELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI 66
ELIG C R LQGP+TD + V K+RDAV + K +LNY+KDG+ FWN L V+P+
Sbjct: 68 ELIGRNC----RLLQGPQTDPDAVTKLRDAVASQKDIAVDILNYRKDGSKFWNALFVSPV 123
Query: 67 KDDSGKTIKFIGMQVEVS 84
+D SG I F Q++ +
Sbjct: 124 RDVSGAVIYFFASQLDFT 141
>gi|383759813|ref|YP_005438799.1| PAS/PAC and GAF sensor-containing diguanylate
cyclase/phosphodiesterase [Rubrivivax gelatinosus IL144]
gi|381380483|dbj|BAL97300.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Rubrivivax gelatinosus IL144]
Length = 904
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 46/70 (65%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78
FL G +TD + +RDA+R + G LLNY+KDGTPFWN +++ P+ D G TI+F+G
Sbjct: 265 FLHGADTDPGLLRALRDALRTSSPFHGELLNYRKDGTPFWNEMSLAPVLDAQGVTIQFVG 324
Query: 79 MQVEVSKYTE 88
+ +VS E
Sbjct: 325 VMSDVSARRE 334
>gi|317031924|ref|XP_001393681.2| white collar [Aspergillus niger CBS 513.88]
Length = 588
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 35/80 (43%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T+ N V +I++A+ G+ + LNY++DG+PF NLL P+ D G+ FI
Sbjct: 318 RFLQGPKTNANSVRRIKEAIEAGRHHSELFLNYRRDGSPFMNLLQCAPLCDSHGRVRYFI 377
Query: 78 GMQVEVSKYT-EGVNDKALR 96
G Q++VS +GV ++LR
Sbjct: 378 GAQIDVSGLVMDGVQMESLR 397
>gi|399087808|ref|ZP_10753267.1| PAS domain S-box [Caulobacter sp. AP07]
gi|398031967|gb|EJL25334.1| PAS domain S-box [Caulobacter sp. AP07]
Length = 369
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 47/67 (70%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD + +++R+A+ G+ +LNY+KDG+ FWN L V+P++D +G+ F
Sbjct: 71 RFLQGPDTDPVQADRVREAIAKGEDAVVDILNYRKDGSSFWNALHVSPVRDKAGEVAYFF 130
Query: 78 GMQVEVS 84
Q++VS
Sbjct: 131 ASQLDVS 137
>gi|186477108|ref|YP_001858578.1| histidine kinase [Burkholderia phymatum STM815]
gi|184193567|gb|ACC71532.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phymatum
STM815]
Length = 533
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Query: 5 TGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVT 64
TG EL RFLQGPETD+ ++++R AV + + +LNY+KDG+ FWN L ++
Sbjct: 59 TGYELTEIIGSNCRFLQGPETDRATIDEVRAAVADRRELATEILNYRKDGSTFWNALFIS 118
Query: 65 PIKDDSGKTIKFIGMQVEVSKY--TEGVNDKALRPNGLSKSL--IRYDARQKEKALGSIT 120
P+ ++ G+ + F G Q++VS+ E +A + L + I +D + +
Sbjct: 119 PVFNEQGELVYFFGSQLDVSRRRDAEDALHQAQKMEALGQLTGGIAHDFNNLLQVMAGYV 178
Query: 121 EVIQT--VKRSQSHIRALSLD 139
+V+Q +QS + A SLD
Sbjct: 179 DVLQMGIEGHAQSAVMAQSLD 199
>gi|387766383|pdb|4EEP|A Chain A, Crystal Structure Of Lov2 Domain Of Arabidopsis Thaliana
Phototropin 2
Length = 115
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 48/70 (68%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V+KIRDA+R+ + +L+NY K G FWNL + P++D G+ FI
Sbjct: 46 RFLQGPETDQATVQKIRDAIRDQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFI 105
Query: 78 GMQVEVSKYT 87
G+Q++ S +
Sbjct: 106 GVQLDGSDHV 115
>gi|134078226|emb|CAK96807.1| unnamed protein product [Aspergillus niger]
Length = 501
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 35/80 (43%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T+ N V +I++A+ G+ + LNY++DG+PF NLL P+ D G+ FI
Sbjct: 318 RFLQGPKTNANSVRRIKEAIEAGRHHSELFLNYRRDGSPFMNLLQCAPLCDSHGRVRYFI 377
Query: 78 GMQVEVSKYT-EGVNDKALR 96
G Q++VS +GV ++LR
Sbjct: 378 GAQIDVSGLVMDGVQMESLR 397
>gi|46114260|ref|XP_383148.1| hypothetical protein FG02972.1 [Gibberella zeae PH-1]
Length = 731
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 32/67 (47%), Positives = 47/67 (70%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T+ V++IRD ++ G+ +C LNY++DG+PF NLL V+P+ D G +
Sbjct: 386 RFLQGPKTNSYSVQRIRDKLKAGQDHCETFLNYRRDGSPFMNLLMVSPLYDSRGIVRYHL 445
Query: 78 GMQVEVS 84
G QV+VS
Sbjct: 446 GAQVDVS 452
>gi|449304795|gb|EMD00802.1| hypothetical protein BAUCODRAFT_61939 [Baudoinia compniacensis UAMH
10762]
Length = 580
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 50/72 (69%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP++ + V ++ +A+ G+ C +LNY++DG+PF NLL + P+ D+ G+ F+
Sbjct: 224 RFLQGPKSSNSTVRRLIEALTTGQEICETILNYRRDGSPFMNLLMIAPLYDNKGQVRYFL 283
Query: 78 GMQVEVSKYTEG 89
G Q++VS+ EG
Sbjct: 284 GCQIDVSQLVEG 295
>gi|448607023|ref|ZP_21659280.1| PAS-PAC-PAC sensing histidine kinase [Haloferax sulfurifontis ATCC
BAA-897]
gi|445738451|gb|ELZ89971.1| PAS-PAC-PAC sensing histidine kinase [Haloferax sulfurifontis ATCC
BAA-897]
Length = 858
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 34/67 (50%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ETD VE +R+AV +G+S L NY+KDGTPFWN L ++P+ DD G+ F+
Sbjct: 192 RFLQGAETDSEPVETLREAVESGESATVSLTNYRKDGTPFWNELKISPVYDD-GELTHFV 250
Query: 78 GMQVEVS 84
G Q + +
Sbjct: 251 GFQTDAT 257
>gi|323450917|gb|EGB06796.1| hypothetical protein AURANDRAFT_28731 [Aureococcus anophagefferens]
Length = 143
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD +V IRDAV +LNY+KDGT FWN V P++D GK F+
Sbjct: 48 RFLQGPRTDPRQVSVIRDAVYKEHEASVTILNYRKDGTTFWNRFFVAPLRDAEGKVTFFV 107
Query: 78 GMQVEVSKY-----TEGVNDKALRPNGLSKSL 104
G+Q +VS T V+ P L +SL
Sbjct: 108 GVQTDVSAAFARPGTSDVDTPKPSPATLPRSL 139
>gi|256032285|pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 17 SRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKF 76
+RFLQGPETD+ V KIRDA+ N +L+NY K G FWNL + P++D G F
Sbjct: 59 ARFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYF 118
Query: 77 IGMQVEVSKYTEGVNDKALR 96
IG+Q++ TE V D A R
Sbjct: 119 IGVQLDG---TEHVRDAAER 135
>gi|448468122|ref|ZP_21599753.1| bacterio-opsin activator [Halorubrum kocurii JCM 14978]
gi|445810865|gb|EMA60879.1| bacterio-opsin activator [Halorubrum kocurii JCM 14978]
Length = 668
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 33/67 (49%), Positives = 44/67 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD VE+I AV + + + NY+KDGTPFWN LTV P+ DD G+ ++
Sbjct: 189 RFLQGPGTDPETVERIAKAVADNEEITVEIRNYRKDGTPFWNELTVAPVYDDDGEIAHYV 248
Query: 78 GMQVEVS 84
G Q +V+
Sbjct: 249 GFQNDVT 255
>gi|162330142|pdb|2V1A|A Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-Induced Signal Transduction (Room
Temperature (293k) Dark Structure Of Lov2 (404-546))
gi|162330143|pdb|2V1B|A Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-Induced Signal Transduction (Room
Temperature (293k) Light Structure Of Lov2 (404-546))
Length = 144
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V KIRDA+ N +L+NY K G FWNL + P++D G FI
Sbjct: 49 RFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFI 108
Query: 78 GMQVEVSKYTEGVNDKALR 96
G+Q++ TE V D A R
Sbjct: 109 GVQLD---GTEHVRDAAER 124
>gi|448608055|ref|ZP_21659894.1| PAS sensor protein [Haloferax sulfurifontis ATCC BAA-897]
gi|445737097|gb|ELZ88635.1| PAS sensor protein [Haloferax sulfurifontis ATCC BAA-897]
Length = 737
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 31/68 (45%), Positives = 46/68 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQGP+TD+ E E+ R+A+ + + LLNY++DGTPFWN +TP+ D G+ +I
Sbjct: 436 RVLQGPDTDEEECERFREAIADEEPCSIELLNYRRDGTPFWNHCEITPVHGDDGRVANYI 495
Query: 78 GMQVEVSK 85
G Q EV++
Sbjct: 496 GFQREVTE 503
>gi|389867117|ref|YP_006369358.1| PAS/PAC light sensor protein [Modestobacter marinus]
gi|388489321|emb|CCH90899.1| putative PAS/PAC light sensor protein [Modestobacter marinus]
Length = 776
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 31/68 (45%), Positives = 47/68 (69%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP T+ V+ +R A+R + LLNY+KDGT FWN L++TP+ D G+ + F+
Sbjct: 254 RFLQGPATEDAAVDDLRRALREQQPITTTLLNYRKDGTAFWNQLSITPVFDGGGELVSFV 313
Query: 78 GMQVEVSK 85
G+Q +V++
Sbjct: 314 GVQTDVTE 321
>gi|298158507|gb|EFH99574.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 534
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 17/120 (14%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ + +E+IG RFLQGPETD+ V+ IR+A+ +LNY+KDG+ FWN
Sbjct: 57 MTGYSSEEIIGTN---CRFLQGPETDRAVVQSIREAIDERVDISTEILNYRKDGSTFWNA 113
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
L ++P+ +D+G I F Q+++S+ + + ALR QK +ALG +T
Sbjct: 114 LFISPVYNDAGDLIYFFASQLDISRRRDA--EDALR------------QAQKMEALGQLT 159
>gi|78048310|ref|YP_364485.1| histidine kinase [Xanthomonas campestris pv. vesicatoria str.
85-10]
gi|78036740|emb|CAJ24433.1| sensory box histidine kinase/response regulator [Xanthomonas
campestris pv. vesicatoria str. 85-10]
Length = 540
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 14/103 (13%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD + +R ++ + + +LNY+KDG+ FWN L ++P+ DD G + F
Sbjct: 77 RFLQGPDTDPASISDVRASIESRSEFATEVLNYRKDGSSFWNALFISPVFDDKGNLVYFF 136
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
G Q++VS+ + + ALR QK +ALG +T
Sbjct: 137 GSQLDVSRRRDA--EDALR------------QAQKMEALGQLT 165
>gi|162330140|pdb|2V0U|A Chain A, N- And C-terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-induced Signal Transduction (cryo Dark
Structure Of Lov2 (404-546))
gi|162330141|pdb|2V0W|A Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are
Involved In Light-Induced Signal Transduction (Cryo-
Trapped Light Structure Of Lov2 (404-546))
Length = 146
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V KIRDA+ N +L+NY K G FWNL + P++D G FI
Sbjct: 51 RFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFI 110
Query: 78 GMQVEVSKYTEGVNDKALR 96
G+Q++ TE V D A R
Sbjct: 111 GVQLD---GTEHVRDAAER 126
>gi|257484183|ref|ZP_05638224.1| histidine kinase [Pseudomonas syringae pv. tabaci str. ATCC 11528]
gi|422678915|ref|ZP_16737189.1| histidine kinase [Pseudomonas syringae pv. tabaci str. ATCC 11528]
gi|331008262|gb|EGH88319.1| histidine kinase [Pseudomonas syringae pv. tabaci str. ATCC 11528]
Length = 534
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 17/120 (14%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ + +E+IG RFLQGPETD+ V+ IR+A+ +LNY+KDG+ FWN
Sbjct: 57 MTGYSSEEIIGTN---CRFLQGPETDRAVVQSIREAIDERVDISTEILNYRKDGSTFWNA 113
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
L ++P+ +D+G I F Q+++S+ + + ALR QK +ALG +T
Sbjct: 114 LFISPVYNDAGDLIYFFASQLDISRRRDA--EDALR------------QAQKMEALGQLT 159
>gi|255021304|ref|ZP_05293352.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
PAS/PAC sensor(s) [Acidithiobacillus caldus ATCC 51756]
gi|254969167|gb|EET26681.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
PAS/PAC sensor(s) [Acidithiobacillus caldus ATCC 51756]
Length = 518
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 49/67 (73%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQGP+TD +E+ I A+R+G +Y G +LNY+++G PFWN L++ P++D G+ ++
Sbjct: 250 RALQGPDTDVHELAIIDQALRDGHAYSGTILNYRRNGEPFWNHLSIVPVRDREGRIGHYV 309
Query: 78 GMQVEVS 84
G+Q ++S
Sbjct: 310 GIQRDIS 316
>gi|416016882|ref|ZP_11564119.1| histidine kinase [Pseudomonas syringae pv. glycinea str. B076]
gi|416027004|ref|ZP_11570335.1| histidine kinase [Pseudomonas syringae pv. glycinea str. race 4]
gi|416028131|ref|ZP_11571231.1| histidine kinase [Pseudomonas syringae pv. glycinea str. race 4]
gi|422407611|ref|ZP_16484577.1| histidine kinase [Pseudomonas syringae pv. glycinea str. race 4]
gi|221272073|sp|Q48IV1.2|LOVHK_PSE14 RecName: Full=Blue-light-activated protein; Includes: RecName:
Full=Blue-light-activated histidine kinase; Includes:
RecName: Full=Response regulator
gi|320324090|gb|EFW80172.1| histidine kinase [Pseudomonas syringae pv. glycinea str. B076]
gi|320327829|gb|EFW83836.1| histidine kinase [Pseudomonas syringae pv. glycinea str. race 4]
gi|320328665|gb|EFW84665.1| histidine kinase [Pseudomonas syringae pv. glycinea str. race 4]
gi|330885482|gb|EGH19631.1| histidine kinase [Pseudomonas syringae pv. glycinea str. race 4]
Length = 534
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 17/120 (14%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ + +E+IG RFLQGPETD+ V+ IR+A+ +LNY+KDG+ FWN
Sbjct: 57 MTGYSSEEIIGTN---CRFLQGPETDRAVVQSIREAIDERVDISTEILNYRKDGSTFWNA 113
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
L ++P+ +D+G I F Q+++S+ + + ALR QK +ALG +T
Sbjct: 114 LFISPVYNDAGDLIYFFASQLDISRRRDA--EDALR------------QAQKMEALGQLT 159
>gi|457693|emb|CAA82994.1| protein kinase [Mesembryanthemum crystallinum]
Length = 572
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 48/75 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD V KIRDA+ N +L+NY K G FWN+ + P++D G+ FI
Sbjct: 89 RFLQGPETDPATVAKIRDAIDNETDVTVQLINYTKTGKKFWNVFHLQPMRDQKGEVQYFI 148
Query: 78 GMQVEVSKYTEGVND 92
G+Q++ S++ E V +
Sbjct: 149 GVQLDGSEHVEPVQN 163
>gi|158853253|dbj|BAF91488.1| aureochrome1 [Vaucheria frigida]
Length = 348
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 46/68 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD V+KIR+A+ G LLNY++DGT FWNL V ++D G + ++
Sbjct: 255 RFLQGPETDPRAVDKIRNAITKGVDTSVCLLNYRQDGTTFWNLFFVAGLRDSKGNIVNYV 314
Query: 78 GMQVEVSK 85
G+Q +VS+
Sbjct: 315 GVQSKVSE 322
>gi|448633793|ref|ZP_21674292.1| HTR-like protein [Haloarcula vallismortis ATCC 29715]
gi|445750484|gb|EMA01922.1| HTR-like protein [Haloarcula vallismortis ATCC 29715]
Length = 748
Score = 75.5 bits (184), Expect = 6e-12, Method: Composition-based stats.
Identities = 41/112 (36%), Positives = 64/112 (57%), Gaps = 9/112 (8%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ET+ V+ +R A+ + L NY+KDGT FWN +T+ P++DD G + ++
Sbjct: 304 RFLQGEETESEPVDAMRAAIETDEPVSVELRNYRKDGTMFWNQVTIAPVRDDDGTVVNYV 363
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKS---LIRYDARQKEKALGSITEVIQTV 126
G Q +V++ E + R LS+S L+R D R++ +G E +TV
Sbjct: 364 GFQQDVTERKEHEH----RLKALSESVQDLLRADTREEVAEIG--VETARTV 409
>gi|383875527|pdb|3ULF|A Chain A, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
gi|383875528|pdb|3ULF|B Chain B, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
gi|383875529|pdb|3ULF|C Chain C, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
gi|383875530|pdb|3ULF|D Chain D, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
gi|383875531|pdb|3ULF|E Chain E, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
gi|383875532|pdb|3ULF|F Chain F, The Light State Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
Length = 170
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 46/68 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD V+KIR+A+ G LLNY++DGT FWNL V ++D G + ++
Sbjct: 88 RFLQGPETDPRAVDKIRNAITKGVDTSVCLLNYRQDGTTFWNLFFVAGLRDSKGNIVNYV 147
Query: 78 GMQVEVSK 85
G+Q +VS+
Sbjct: 148 GVQSKVSE 155
>gi|448643771|ref|ZP_21678903.1| PAS domain S-box [Haloarcula sinaiiensis ATCC 33800]
gi|445758223|gb|EMA09546.1| PAS domain S-box [Haloarcula sinaiiensis ATCC 33800]
Length = 870
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 33/67 (49%), Positives = 47/67 (70%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD +V IRDA+ + + L NY++DGT FWN LT+TPI DDSG +++I
Sbjct: 314 RFLQGEDTDPEKVTAIRDAIDDEEPIALELRNYQRDGTEFWNHLTLTPIYDDSGDLVRYI 373
Query: 78 GMQVEVS 84
G Q +++
Sbjct: 374 GTQEDIT 380
>gi|334121164|ref|ZP_08495238.1| PAS/PAC sensor signal transduction histidine kinase [Microcoleus
vaginatus FGP-2]
gi|333455450|gb|EGK84099.1| PAS/PAC sensor signal transduction histidine kinase [Microcoleus
vaginatus FGP-2]
Length = 1113
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 33/67 (49%), Positives = 47/67 (70%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD V++IR A++ L NY+KDGTPFWN LT++P++D SG FI
Sbjct: 78 RFLQGPDTDGAAVDQIRVALKEQHDCKVVLKNYRKDGTPFWNELTISPVRDSSGIVTHFI 137
Query: 78 GMQVEVS 84
G+Q +++
Sbjct: 138 GVQADIT 144
>gi|332527012|ref|ZP_08403097.1| PAS/PAC and GAF sensor-containing diguanylate
cyclase/phosphodiesterase [Rubrivivax benzoatilyticus
JA2]
gi|332111447|gb|EGJ11430.1| PAS/PAC and GAF sensor-containing diguanylate
cyclase/phosphodiesterase [Rubrivivax benzoatilyticus
JA2]
Length = 687
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 56/93 (60%), Gaps = 7/93 (7%)
Query: 5 TGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLT 62
+ +E+IG C LL QGP T + V+ +R A+ G+ + LLNY+KDGTPFWN L
Sbjct: 46 SAEEMIGSSCALL-----QGPGTSADTVQAMRAALDRGEPFHAELLNYRKDGTPFWNELK 100
Query: 63 VTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKAL 95
+ P+ D G +F+G+Q +V+ + +N +L
Sbjct: 101 IVPVHADDGTLTQFVGVQRDVTARRDAMNKLSL 133
>gi|448352551|ref|ZP_21541334.1| HTR-like protein [Natrialba hulunbeirensis JCM 10989]
gi|445642613|gb|ELY95680.1| HTR-like protein [Natrialba hulunbeirensis JCM 10989]
Length = 736
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 46/71 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP T ++ VE +R+ + N + +LNY++DGTPFWN L +TP+ DD G F+
Sbjct: 435 RFLQGPLTAESTVETVREGIANAEPVDVDILNYRRDGTPFWNNLQITPVFDDDGSVSYFV 494
Query: 78 GMQVEVSKYTE 88
G Q +V+ E
Sbjct: 495 GFQTDVTARIE 505
>gi|383875517|pdb|3UE6|A Chain A, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
gi|383875518|pdb|3UE6|B Chain B, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
gi|383875519|pdb|3UE6|C Chain C, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
gi|383875520|pdb|3UE6|D Chain D, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
gi|383875521|pdb|3UE6|E Chain E, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
gi|383875522|pdb|3UE6|F Chain F, The Dark Structure Of The Blue-light Photoreceptor
Aureochrome1 Lov
Length = 166
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 46/68 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD V+KIR+A+ G LLNY++DGT FWNL V ++D G + ++
Sbjct: 84 RFLQGPETDPRAVDKIRNAITKGVDTSVCLLNYRQDGTTFWNLFFVAGLRDSKGNIVNYV 143
Query: 78 GMQVEVSK 85
G+Q +VS+
Sbjct: 144 GVQSKVSE 151
>gi|302896206|ref|XP_003046983.1| hypothetical protein NECHADRAFT_95335 [Nectria haematococca mpVI
77-13-4]
gi|256727911|gb|EEU41270.1| hypothetical protein NECHADRAFT_95335 [Nectria haematococca mpVI
77-13-4]
Length = 656
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 49/75 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQGP+TD+ + ++R A+ +LN+KKDGTPFW+LL + P+ D +GK ++
Sbjct: 323 RLLQGPQTDRETISRMRSAIWRNDECTELILNFKKDGTPFWDLLFLCPLLDTAGKLKFYL 382
Query: 78 GMQVEVSKYTEGVND 92
G Q++VS EG +D
Sbjct: 383 GAQIDVSSSIEGADD 397
>gi|302879861|ref|YP_003848425.1| PAS/PAC sensor-containing diguanylate cyclase [Gallionella
capsiferriformans ES-2]
gi|302582650|gb|ADL56661.1| diguanylate cyclase with PAS/PAC sensor [Gallionella
capsiferriformans ES-2]
Length = 312
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 83/149 (55%), Gaps = 18/149 (12%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
+S + ELIG + RFLQG +TD+ E+ +R+++ G S L NY++DGT FWN
Sbjct: 45 LSGYSAAELIGKPV---RFLQGTDTDQAEIAVLRESLLTGVSCLVTLRNYRRDGTLFWNE 101
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
L+++PI+D +G+ F+G+Q +V+ + ++ LR + L + +QK L I+
Sbjct: 102 LSISPIRDKTGELTHFVGIQKDVTARV--IQEQNLRQSNLH---LHAALKQKSPPLPGIS 156
Query: 121 E----------VIQTVKRSQSHIRALSLD 139
+ ++QT KR+ S + L ++
Sbjct: 157 DRLHFDEQLTGMLQTAKRTHSLLSVLMVN 185
>gi|340782159|ref|YP_004748766.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
[Acidithiobacillus caldus SM-1]
gi|340556312|gb|AEK58066.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
PAS/PAC sensor(s) [Acidithiobacillus caldus SM-1]
Length = 518
Score = 75.5 bits (184), Expect = 8e-12, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 49/67 (73%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQGP+TD +E+ I A+R+G +Y G +LNY+++G PFWN L++ P++D G+ ++
Sbjct: 250 RALQGPDTDVHELAIIDQALRDGHAYSGTILNYRRNGEPFWNHLSIVPVRDREGRIGHYV 309
Query: 78 GMQVEVS 84
G+Q ++S
Sbjct: 310 GIQRDIS 316
>gi|256032286|pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V KIRDA+ N +L+NY K G FWNL + P++D G FI
Sbjct: 60 RFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFI 119
Query: 78 GMQVEVSKYTEGVNDKALR 96
G+Q++ TE V D A R
Sbjct: 120 GVQLDG---TEHVRDAAER 135
>gi|448621003|ref|ZP_21668080.1| PAS sensor protein [Haloferax denitrificans ATCC 35960]
gi|445756053|gb|EMA07429.1| PAS sensor protein [Haloferax denitrificans ATCC 35960]
Length = 719
Score = 75.1 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 31/68 (45%), Positives = 46/68 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQGP+TD+ E E+ R+A+ + + LLNY++DGTPFWN +TP+ D G+ +I
Sbjct: 418 RVLQGPDTDEAECERFREAIADEEPCSIELLNYRRDGTPFWNHCEITPVHGDDGRVANYI 477
Query: 78 GMQVEVSK 85
G Q EV++
Sbjct: 478 GFQREVTE 485
>gi|359461408|ref|ZP_09249971.1| PAS sensor diguanylate cyclase/phophodiesterase [Acaryochloris sp.
CCMEE 5410]
Length = 912
Score = 75.1 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 49/68 (72%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD N V++IR A++N + + G +LNY K G PFWNLL + P+++ G+ +
Sbjct: 166 RFLQGPKTDANTVDEIRLALKNYQPFEGEILNYCKTGQPFWNLLRIKPLRNAQGEVHFLV 225
Query: 78 GMQVEVSK 85
G+Q ++++
Sbjct: 226 GIQTDITQ 233
>gi|422590595|ref|ZP_16665249.1| histidine kinase [Pseudomonas syringae pv. morsprunorum str.
M302280]
gi|330877741|gb|EGH11890.1| histidine kinase [Pseudomonas syringae pv. morsprunorum str.
M302280]
Length = 534
Score = 75.1 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 38/103 (36%), Positives = 58/103 (56%), Gaps = 14/103 (13%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD V IRDA+ ++NY+KDG+ FWN L ++P+ +D+G I F
Sbjct: 71 RFLQGPDTDPAVVRSIRDAIEERADISAEIINYRKDGSSFWNALFISPVYNDAGDLIYFF 130
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
Q+++S+ + ++ALR QK +ALG +T
Sbjct: 131 ASQLDISRRKDA--EEALR------------QAQKMEALGQLT 159
>gi|229819115|ref|YP_002880641.1| PAS/PAC sensor protein [Beutenbergia cavernae DSM 12333]
gi|229565028|gb|ACQ78879.1| putative PAS/PAC sensor protein [Beutenbergia cavernae DSM 12333]
Length = 580
Score = 75.1 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 46/67 (68%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD V ++ AVR + LLNY+ DGTPFWN ++++P++DD+G +
Sbjct: 54 RFLQGPATDPAAVARLGLAVRADEPVAAALLNYRPDGTPFWNDVSISPVRDDAGAVTHHV 113
Query: 78 GMQVEVS 84
G+QV+V+
Sbjct: 114 GVQVDVT 120
>gi|413959779|ref|ZP_11399010.1| histidine kinase [Burkholderia sp. SJ98]
gi|413939729|gb|EKS71697.1| histidine kinase [Burkholderia sp. SJ98]
Length = 403
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 62/103 (60%), Gaps = 14/103 (13%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQGPET + + +IRDA+ G+ +LNY+KDG+ FWN L ++P+++++G + +
Sbjct: 70 RLLQGPETSRATISEIRDAIAEGREINTEILNYRKDGSSFWNALFISPVRNEAGDIVYYF 129
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
Q+++S+ + ++ALR + QK +ALG +T
Sbjct: 130 ASQLDISRRRDA--EEALRQS------------QKMEALGQLT 158
>gi|448435239|ref|ZP_21586716.1| bacterio-opsin activator [Halorubrum tebenquichense DSM 14210]
gi|445684063|gb|ELZ36449.1| bacterio-opsin activator [Halorubrum tebenquichense DSM 14210]
Length = 667
Score = 75.1 bits (183), Expect = 8e-12, Method: Composition-based stats.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD VE+I +A+ N + + NY++DGTPFWN LTV P+ D+ G+ ++
Sbjct: 189 RFLQGPGTDPETVEEIAEAIGNEEEVTVEIRNYRRDGTPFWNELTVAPVYDEEGELAHYV 248
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKR 128
G Q +VS+ R L+ + R ++ LG + ++ + R
Sbjct: 249 GFQNDVSERKAAERLAEERAEKLAT-----ERRALDRLLGRVNGLLSDISR 294
>gi|387766388|pdb|4EEU|A Chain A, Crystal Structure Of Philov2.1
Length = 118
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 46/65 (70%)
Query: 17 SRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKF 76
+RFLQGPETD+ V+KIRDA+R+ + +L+NY K G FWNLL + P++D G F
Sbjct: 48 ARFLQGPETDQATVQKIRDAIRDQRETTVQLINYTKSGKKFWNLLHLQPVRDRKGGLQYF 107
Query: 77 IGMQV 81
IG+Q+
Sbjct: 108 IGVQL 112
>gi|422652098|ref|ZP_16714886.1| histidine kinase [Pseudomonas syringae pv. actinidiae str. M302091]
gi|330965169|gb|EGH65429.1| histidine kinase [Pseudomonas syringae pv. actinidiae str. M302091]
Length = 534
Score = 75.1 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 38/103 (36%), Positives = 58/103 (56%), Gaps = 14/103 (13%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD V IRDA+ ++NY+KDG+ FWN L ++P+ +D+G I F
Sbjct: 71 RFLQGPDTDPAVVRSIRDAIEERADISAEIINYRKDGSSFWNALFISPVYNDAGDLIYFF 130
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
Q+++S+ + ++ALR QK +ALG +T
Sbjct: 131 ASQLDISRRKDA--EEALR------------QAQKMEALGQLT 159
>gi|108862061|gb|ABG21841.1| Nonphototropic hypocotyl protein 1, putative, expressed [Oryza
sativa Japonica Group]
gi|215694946|dbj|BAG90137.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 616
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V KIRDA+ N +L+NY K G FWNL + P++D G FI
Sbjct: 146 RFLQGPETDRATVRKIRDAIDNQAEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFI 205
Query: 78 GMQVEVSKYTEGVNDKALR 96
G+Q++ TE V D A +
Sbjct: 206 GVQLDG---TEHVQDDAAK 221
>gi|256032284|pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V KIRDA+ N +L+NY K G FWNL + P++D G FI
Sbjct: 60 RFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFI 119
Query: 78 GMQVEVSKYTEGVNDKALR 96
G+Q++ TE V D A R
Sbjct: 120 GVQLDG---TEHVRDAAER 135
>gi|452206149|ref|YP_007486271.1| receiver/sensor/bat box HTH-10 family transcription regulator Bat
(homolog to bacterioopsin activator) [Natronomonas
moolapensis 8.8.11]
gi|452082249|emb|CCQ35503.1| receiver/sensor/bat box HTH-10 family transcription regulator Bat
(homolog to bacterioopsin activator) [Natronomonas
moolapensis 8.8.11]
Length = 673
Score = 75.1 bits (183), Expect = 9e-12, Method: Composition-based stats.
Identities = 48/132 (36%), Positives = 77/132 (58%), Gaps = 15/132 (11%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD V+++R AV N +S +LNY+K+G PFWN L+V P+ DD G+ ++
Sbjct: 189 RFLQGEGTDPETVDRLRQAVDNERSISVEILNYRKNGEPFWNQLSVAPVHDD-GELTHYL 247
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRSQSHIRALS 137
G Q +V++ E V +A R +R D R +E+ L I ++Q H+ A +
Sbjct: 248 GFQTDVTERKE-VELRARR----QAEKLRADRRARERLLARIDGIVQ-------HVTAAT 295
Query: 138 LDTTNK--LEEK 147
+++T++ LEE+
Sbjct: 296 VESTSRAELEER 307
>gi|340782152|ref|YP_004748759.1| hypothetical protein Atc_1410 [Acidithiobacillus caldus SM-1]
gi|340556305|gb|AEK58059.1| conserved hypothetical signaling protein [Acidithiobacillus caldus
SM-1]
Length = 522
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/66 (46%), Positives = 47/66 (71%)
Query: 20 LQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGM 79
LQGPETD E+ +I A+ G Y GRL+NY++DG FWN L++ PI++ +G+ F+G+
Sbjct: 253 LQGPETDIQELARIDRALAEGNFYDGRLINYRRDGETFWNHLSIVPIRNRNGELTHFVGI 312
Query: 80 QVEVSK 85
Q +VS+
Sbjct: 313 QRDVSR 318
>gi|284993377|ref|YP_003411932.1| putative PAS/PAC sensor protein [Geodermatophilus obscurus DSM
43160]
gi|284066623|gb|ADB77561.1| putative PAS/PAC sensor protein [Geodermatophilus obscurus DSM
43160]
Length = 760
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/67 (47%), Positives = 47/67 (70%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD V +IR A+R ++ LLN++KDGT FWN L+V+P+ D G+ + F+
Sbjct: 232 RFLQGPATDPATVAEIRAALRARQAITTTLLNHRKDGTAFWNQLSVSPVFDGEGELVSFV 291
Query: 78 GMQVEVS 84
G+Q +V+
Sbjct: 292 GVQTDVT 298
>gi|331228939|ref|XP_003327136.1| hypothetical protein PGTG_08913 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309306126|gb|EFP82717.1| hypothetical protein PGTG_08913 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 856
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 71/151 (47%), Gaps = 26/151 (17%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP T V++IRD + +G+ LLNY+KDGTPF+ LL + P +D +G I FI
Sbjct: 478 RFLQGPGTSPESVQRIRDGLNSGEGCTELLLNYRKDGTPFYCLLCIIPFRDVTGALIYFI 537
Query: 78 GMQVEVS------------------KYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI 119
G Q+ V+ Y+ G N+ LS+S R R + L +
Sbjct: 538 GGQINVTGMLSSQKGLSFLMANNEDAYSHGTNE-------LSRSTGRSAGRSTDDLLDHV 590
Query: 120 TEVIQTVKRSQSHIRALSLDTTNKLEEKRSS 150
+ + H A+ TN + E+ +S
Sbjct: 591 GLSQHSFSPTMQHF-AMRGHPTNNVSEQTTS 620
>gi|255021297|ref|ZP_05293345.1| conserved hypothetical signaling protein [Acidithiobacillus caldus
ATCC 51756]
gi|254969160|gb|EET26674.1| conserved hypothetical signaling protein [Acidithiobacillus caldus
ATCC 51756]
Length = 522
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/66 (46%), Positives = 47/66 (71%)
Query: 20 LQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGM 79
LQGPETD E+ +I A+ G Y GRL+NY++DG FWN L++ PI++ +G+ F+G+
Sbjct: 253 LQGPETDIQELARIDRALAEGNFYDGRLINYRRDGETFWNHLSIVPIRNRNGELTHFVGI 312
Query: 80 QVEVSK 85
Q +VS+
Sbjct: 313 QRDVSR 318
>gi|448489426|ref|ZP_21607649.1| HTR-like protein [Halorubrum californiensis DSM 19288]
gi|445694798|gb|ELZ46916.1| HTR-like protein [Halorubrum californiensis DSM 19288]
Length = 594
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 48/71 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T++ V+ +RDA+ +S LLNY+KDGT FWN +++ PI D +G ++
Sbjct: 307 RFLQGPDTEEASVQALRDAIDAEESTSVELLNYRKDGTEFWNRVSIAPISDANGTVTHWV 366
Query: 78 GMQVEVSKYTE 88
G Q +++ + E
Sbjct: 367 GFQEDITAFKE 377
>gi|448530974|ref|ZP_21620808.1| bacterio-opsin activator [Halorubrum hochstenium ATCC 700873]
gi|445707414|gb|ELZ59268.1| bacterio-opsin activator [Halorubrum hochstenium ATCC 700873]
Length = 667
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD VE+I +A+ N + + NY++DGTPFWN LTV P+ D+ G ++
Sbjct: 189 RFLQGPGTDPETVEEIAEAIGNEEEVTVEIRNYRRDGTPFWNELTVAPVYDEEGDLAHYV 248
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKR 128
G Q +VS+ R L+ + R ++ LG + ++ + R
Sbjct: 249 GFQNDVSERKAAERLAEERAEKLAT-----ERRALDRLLGRVNGLLSDISR 294
>gi|390949606|ref|YP_006413365.1| PAS domain-containing protein [Thiocystis violascens DSM 198]
gi|390426175|gb|AFL73240.1| PAS domain S-box [Thiocystis violascens DSM 198]
Length = 515
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 49/148 (33%), Positives = 78/148 (52%), Gaps = 10/148 (6%)
Query: 1 MSDPTGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFW 58
M+ T E++G C RFLQ +T + E+E IR A+R G+ L NY+KDG+ FW
Sbjct: 50 MTGYTAAEILGRNC-----RFLQAHDTRQPEIETIRAALREGRETSVLLRNYRKDGSLFW 104
Query: 59 NLLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGS 118
N LT+ P++D G+ ++G+Q +++ E A R ++S+I D+ Q +
Sbjct: 105 NQLTLAPVRDQCGQITHYVGIQQDMTALKEA-QMLAERAQRYAQSII--DSLQALICVVD 161
Query: 119 ITEVIQTVKRSQSHIRALSLDTTNKLEE 146
+T +Q+V RS A S +L E
Sbjct: 162 VTGAVQSVNRSWRQCLASSGVDLTRLSE 189
>gi|317158631|ref|XP_001827136.2| white collar [Aspergillus oryzae RIB40]
gi|391873416|gb|EIT82459.1| hypothetical protein Ao3042_00388 [Aspergillus oryzae 3.042]
Length = 565
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/67 (47%), Positives = 45/67 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T+ N V +IR+A+ G+ + LNY++DG+PF NLL P+ D G FI
Sbjct: 290 RFLQGPKTNPNSVRRIREAIVAGRHHSELFLNYRRDGSPFMNLLQCAPLCDSQGTVRYFI 349
Query: 78 GMQVEVS 84
G Q++VS
Sbjct: 350 GAQIDVS 356
>gi|168702150|ref|ZP_02734427.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
2246]
Length = 997
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 50/68 (73%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD V+++RDA+R+ ++ LLNY+KDGT FWN L+++P++D + +F+
Sbjct: 547 RFLQGKDTDPAAVDRLRDALRDERACTVELLNYRKDGTAFWNELSLSPVRDGGDRVTQFV 606
Query: 78 GMQVEVSK 85
G+ +V++
Sbjct: 607 GVLTDVTQ 614
>gi|451997274|gb|EMD89739.1| hypothetical protein COCHEDRAFT_1177632 [Cochliobolus
heterostrophus C5]
Length = 809
Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T++N V + AVR GK + LNY++DG+PF NLL P+ D G FI
Sbjct: 425 RFLQGPKTNRNSVARFGAAVREGKDHSEVFLNYRRDGSPFMNLLMTAPLCDSRGTVRYFI 484
Query: 78 GMQVEVSKYT-EGVNDKALR 96
G Q++V+ EG A R
Sbjct: 485 GAQIDVTGLVKEGTELDAFR 504
>gi|452208293|ref|YP_007488415.1| receiver/sensor box protein [Natronomonas moolapensis 8.8.11]
gi|452084393|emb|CCQ37735.1| receiver/sensor box protein [Natronomonas moolapensis 8.8.11]
Length = 652
Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/101 (40%), Positives = 64/101 (63%), Gaps = 4/101 (3%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD V IRDA+ + +S L NY+KDGT FWN LTVTPI DD G+ ++++
Sbjct: 311 RFLQGEDTDPETVAAIRDAIDDEESISVELRNYRKDGTEFWNRLTVTPIYDD-GELVRYL 369
Query: 78 GMQVEVSKYTEGVNDKALRP-NGLSKSLIRYDARQKEKALG 117
G Q +V++ + +++ L N +++L+ RQ+ +G
Sbjct: 370 GTQRDVTE--QKTHERRLTELNRAAQTLLTAKTRQEIAEVG 408
>gi|238506347|ref|XP_002384375.1| white collar, putative [Aspergillus flavus NRRL3357]
gi|220689088|gb|EED45439.1| white collar, putative [Aspergillus flavus NRRL3357]
Length = 499
Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/67 (47%), Positives = 45/67 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T+ N V +IR+A+ G+ + LNY++DG+PF NLL P+ D G FI
Sbjct: 224 RFLQGPKTNPNSVRRIREAIIAGRHHSELFLNYRRDGSPFMNLLQCAPLCDSQGTVRYFI 283
Query: 78 GMQVEVS 84
G Q++VS
Sbjct: 284 GAQIDVS 290
>gi|424883969|ref|ZP_18307597.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WU95]
gi|392515630|gb|EIW40363.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WU95]
Length = 367
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 67/124 (54%), Gaps = 8/124 (6%)
Query: 5 TGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTV 63
T +EL+G C R LQGP+TD + V K+R A+ + S LLNY+KDG+ FWN L V
Sbjct: 64 TPEELVGKNC----RLLQGPDTDPSAVTKLRKAIDSEDSISVDLLNYRKDGSTFWNALYV 119
Query: 64 TPIKDDSGKTIKFIGMQVEVSKY-TEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEV 122
+P +D SGK F Q++ + + R N ++ L R R+ E AL S T +
Sbjct: 120 SPARDSSGKVKYFFASQLDFTHIKNREIELAEARGNAEAEVLTR--TRELESALESKTLL 177
Query: 123 IQTV 126
+ V
Sbjct: 178 VHEV 181
>gi|188583707|ref|YP_001927152.1| signal transduction histidine kinase [Methylobacterium populi
BJ001]
gi|179347205|gb|ACB82617.1| signal transduction histidine kinase [Methylobacterium populi
BJ001]
Length = 366
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 48/67 (71%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQGP TD+ ++++R A+ G+ + G LLNY+KDGT FWN +T+ P++D++G+ + F
Sbjct: 66 RMLQGPLTDEAVLQRMRVALAAGRPFEGELLNYRKDGTTFWNGMTINPVRDEAGEVVFFF 125
Query: 78 GMQVEVS 84
Q +++
Sbjct: 126 SAQADMT 132
>gi|75907252|ref|YP_321548.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
29413]
gi|75700977|gb|ABA20653.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
29413]
Length = 1820
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 75/133 (56%), Gaps = 7/133 (5%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +T + +E++R A++ GK+ L NY+KDG+ FWN L+V+PI +D+G+ FI
Sbjct: 490 RFLQGNDTTQPAIEELRSALKAGKNCKVILRNYRKDGSLFWNQLSVSPIYNDNGQLSHFI 549
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKR----SQSHI 133
G+Q ++S + + +LR L+ I YD G I + +R S+ HI
Sbjct: 550 GIQTDISDRQQA--EASLRRQALTFENI-YDGVIITNLQGQILDWNPAAERMFGYSKDHI 606
Query: 134 RALSLDTTNKLEE 146
S+ +K+EE
Sbjct: 607 CGQSISILHKVEE 619
>gi|335438286|ref|ZP_08561034.1| bacterio-opsin activator [Halorhabdus tiamatea SARL4B]
gi|334892480|gb|EGM30713.1| bacterio-opsin activator [Halorhabdus tiamatea SARL4B]
Length = 677
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 47/72 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ETD ++R+AVR+ +S LLNY+ DG+ FWN L ++PI+D+ G F+
Sbjct: 200 RFLQGEETDAETTLQLREAVRDQESAALELLNYRADGSTFWNNLEISPIRDEDGNVTNFV 259
Query: 78 GMQVEVSKYTEG 89
G Q ++++ E
Sbjct: 260 GFQQDITERKEA 271
>gi|359783901|ref|ZP_09287108.1| histidine kinase [Pseudomonas psychrotolerans L19]
gi|359368140|gb|EHK68724.1| histidine kinase [Pseudomonas psychrotolerans L19]
Length = 537
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 39/103 (37%), Positives = 61/103 (59%), Gaps = 14/103 (13%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD++ V +IR+AV + ++NY+KDG+ FWN L V+P+ +D+G+ +
Sbjct: 75 RFLQGPETDRSVVGQIREAVEQEREISVEIINYRKDGSTFWNALFVSPVYNDAGELTYYF 134
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
Q++VS+ + + ALR QK +ALG +T
Sbjct: 135 ASQLDVSRRRDA--EDALR------------QAQKMEALGQLT 163
>gi|242345219|dbj|BAH80323.1| aureochrome2-like protein [Ochromonas danica]
Length = 360
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 44/66 (66%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD EV K+ A+ G+ Y LLNY+KDG FWN + ++ +KD +G+T +
Sbjct: 191 RFLQGPRTDPTEVAKVSRALAEGRDYSTVLLNYRKDGRTFWNQILLSHVKDRAGRTFFVV 250
Query: 78 GMQVEV 83
G+Q +V
Sbjct: 251 GIQTQV 256
>gi|67925445|ref|ZP_00518788.1| PAS [Crocosphaera watsonii WH 8501]
gi|67852704|gb|EAM48120.1| PAS [Crocosphaera watsonii WH 8501]
Length = 297
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 58/89 (65%), Gaps = 5/89 (5%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + + E+E+IRD ++ G+S L NY+KDG+ FWN ++++PIKD+SG + ++
Sbjct: 213 RFLQGSDDQQPELEQIRDCLQKGESCHVTLRNYRKDGSLFWNEMSLSPIKDESGNILYYL 272
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIR 106
G+Q +V+ K ++PN K L R
Sbjct: 273 GVQTDVTD-----KKKLMKPNKDIKHLYR 296
>gi|429221706|ref|YP_007174032.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
protein [Deinococcus peraridilitoris DSM 19664]
gi|429132569|gb|AFZ69583.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
protein [Deinococcus peraridilitoris DSM 19664]
Length = 297
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 45/67 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD ++R+A+ G S +LNY++DGTPFWN L + PI D+ G+ F+
Sbjct: 57 RFLQGPGTDAYTRTQMREALCAGLSLDVVILNYRRDGTPFWNALNLAPIHDEQGRVTHFV 116
Query: 78 GMQVEVS 84
G+Q +V+
Sbjct: 117 GVQTDVT 123
>gi|224008813|ref|XP_002293365.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220970765|gb|EED89101.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 113
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 41/67 (61%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD+ V+ IR VR G LLNYK DGTPFWN V ++D + F+
Sbjct: 47 RFLQGPGTDQAAVDVIRKGVREGVDTSVCLLNYKADGTPFWNQFFVAALRDAENNVVNFV 106
Query: 78 GMQVEVS 84
G+Q EVS
Sbjct: 107 GVQCEVS 113
>gi|452207683|ref|YP_007487805.1| sensor box histidine kinase [Natronomonas moolapensis 8.8.11]
gi|452083783|emb|CCQ37110.1| sensor box histidine kinase [Natronomonas moolapensis 8.8.11]
Length = 1490
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 6/86 (6%)
Query: 2 SDPTG---KELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFW 58
SD TG +++GC RFL GPETD E+ ++R+A+ G+ L NY+KDG+ +W
Sbjct: 685 SDITGYQEADVVGCN---PRFLHGPETDPEELSRLREAIAAGEPVTVELKNYRKDGSEYW 741
Query: 59 NLLTVTPIKDDSGKTIKFIGMQVEVS 84
N L+VTP+ G KFIG+Q +V+
Sbjct: 742 NRLSVTPVTAADGTLSKFIGIQQDVT 767
>gi|408398639|gb|EKJ77769.1| hypothetical protein FPSE_02267 [Fusarium pseudograminearum CS3096]
Length = 729
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 47/67 (70%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T+ V++IR+ ++ G+ +C LNY++DG+PF NLL V+P+ D G +
Sbjct: 384 RFLQGPKTNSYSVQRIREKLKAGQDHCETFLNYRRDGSPFMNLLMVSPLYDSRGIVRYHL 443
Query: 78 GMQVEVS 84
G QV+VS
Sbjct: 444 GAQVDVS 450
>gi|170749966|ref|YP_001756226.1| histidine kinase [Methylobacterium radiotolerans JCM 2831]
gi|170656488|gb|ACB25543.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
radiotolerans JCM 2831]
Length = 539
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/87 (39%), Positives = 57/87 (65%), Gaps = 7/87 (8%)
Query: 1 MSDPTGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFW 58
M+ T +ELIG C RFLQGP+TD++ V ++R A+ + + +LNY+K+G+ FW
Sbjct: 65 MTGYTPEELIGRNC-----RFLQGPDTDRDSVAQVRAAIAEKREFATEILNYRKNGSTFW 119
Query: 59 NLLTVTPIKDDSGKTIKFIGMQVEVSK 85
N L V+P+ + G+ + + G Q++VS+
Sbjct: 120 NALFVSPVYNADGELVYYFGSQLDVSR 146
>gi|448688370|ref|ZP_21694203.1| HTR-like protein [Haloarcula japonica DSM 6131]
gi|445779431|gb|EMA30361.1| HTR-like protein [Haloarcula japonica DSM 6131]
Length = 748
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/112 (35%), Positives = 63/112 (56%), Gaps = 9/112 (8%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ET V+ +R A+ + L NY+KDGT FWN +++ P++DD G + ++
Sbjct: 304 RFLQGEETKSEPVDVMRAAIDADEPVSVELRNYRKDGTMFWNQVSIAPVRDDDGAVVNYV 363
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKS---LIRYDARQKEKALGSITEVIQTV 126
G Q +++++ E R LS+S LIR D R++ +G E +TV
Sbjct: 364 GFQQDITEWKE----HERRLKALSESVHDLIRADTREEVAEIG--VETARTV 409
>gi|440733760|ref|ZP_20913441.1| histidine kinase [Xanthomonas translucens DAR61454]
gi|440358988|gb|ELP96317.1| histidine kinase [Xanthomonas translucens DAR61454]
Length = 542
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/122 (33%), Positives = 70/122 (57%), Gaps = 21/122 (17%)
Query: 1 MSDPTGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFW 58
M+ + +EL+G C RFLQGP+TD++ V+ +R+A+ +LNY+KDG+ FW
Sbjct: 63 MTGYSSEELLGNNC-----RFLQGPDTDRDTVDSVREAIAARSEVAVEILNYRKDGSSFW 117
Query: 59 NLLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGS 118
N L ++P+ ++ G+ + + G Q++VS+ + + ALR QK +ALG
Sbjct: 118 NALFISPVYNEHGELVYYFGSQLDVSRRRD--TEDALR------------QAQKMEALGQ 163
Query: 119 IT 120
+T
Sbjct: 164 LT 165
>gi|433676226|ref|ZP_20508362.1| Blue-light-activated protein Includes: RecName:
Full=Blue-light-activated histidine kinase [Xanthomonas
translucens pv. translucens DSM 18974]
gi|430818652|emb|CCP38640.1| Blue-light-activated protein Includes: RecName:
Full=Blue-light-activated histidine kinase [Xanthomonas
translucens pv. translucens DSM 18974]
Length = 542
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/122 (33%), Positives = 70/122 (57%), Gaps = 21/122 (17%)
Query: 1 MSDPTGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFW 58
M+ + +EL+G C RFLQGP+TD++ V+ +R+A+ +LNY+KDG+ FW
Sbjct: 63 MTGYSSEELLGNNC-----RFLQGPDTDRDTVDSVREAIAARSEVAVEILNYRKDGSSFW 117
Query: 59 NLLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGS 118
N L ++P+ ++ G+ + + G Q++VS+ + + ALR QK +ALG
Sbjct: 118 NALFISPVYNEHGELVYYFGSQLDVSRRRD--TEDALR------------QAQKMEALGQ 163
Query: 119 IT 120
+T
Sbjct: 164 LT 165
>gi|323448496|gb|EGB04394.1| hypothetical protein AURANDRAFT_9009 [Aureococcus anophagefferens]
Length = 104
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 44/66 (66%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD V KIR+A+++G LLNYK D T FWN + ++DD+G + F+
Sbjct: 39 RFLQGPRTDARAVGKIREAIKHGTDVQICLLNYKIDSTTFWNHFFIAALRDDAGDVVNFL 98
Query: 78 GMQVEV 83
G+Q+EV
Sbjct: 99 GVQIEV 104
>gi|383619882|ref|ZP_09946288.1| PAS/PAC sensor protein [Halobiforma lacisalsi AJ5]
gi|448696567|ref|ZP_21697979.1| PAS/PAC sensor protein [Halobiforma lacisalsi AJ5]
gi|445783195|gb|EMA34030.1| PAS/PAC sensor protein [Halobiforma lacisalsi AJ5]
Length = 1462
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 44/67 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ETD + ++R+AV + L NY+ DGTPFWN +TVTP++D+ G F+
Sbjct: 378 RFLQGEETDPERIGELREAVEAAEQTTVELRNYRADGTPFWNRVTVTPLEDEDGAVTHFV 437
Query: 78 GMQVEVS 84
G Q +V+
Sbjct: 438 GFQEDVT 444
>gi|381152639|ref|ZP_09864508.1| PAS domain S-box [Methylomicrobium album BG8]
gi|380884611|gb|EIC30488.1| PAS domain S-box [Methylomicrobium album BG8]
Length = 538
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/85 (43%), Positives = 53/85 (62%), Gaps = 3/85 (3%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ + +ELIG L R LQGPETD +E IR A+R GK L N++K+GT FWN
Sbjct: 197 MTGYSREELIG---LNPRILQGPETDPEAIETIRQAIREGKPCLTTLKNHRKNGTIFWNE 253
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSK 85
L ++P+ D G +IG+Q +V++
Sbjct: 254 LFISPVYDSRGNLTHWIGVQTDVTQ 278
>gi|448508777|ref|ZP_21615595.1| HTR-like protein [Halorubrum distributum JCM 9100]
gi|448517673|ref|ZP_21617247.1| HTR-like protein [Halorubrum distributum JCM 10118]
gi|445697088|gb|ELZ49162.1| HTR-like protein [Halorubrum distributum JCM 9100]
gi|445705888|gb|ELZ57776.1| HTR-like protein [Halorubrum distributum JCM 10118]
Length = 596
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 47/71 (66%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T++ V+ +RDA+ +S LLNY+KDGT FWN +++ PI D G ++
Sbjct: 307 RFLQGPDTEEESVQALRDAIDAEESTSVELLNYRKDGTEFWNRVSIAPICDADGAVTHWV 366
Query: 78 GMQVEVSKYTE 88
G Q +++ + E
Sbjct: 367 GFQEDITAFKE 377
>gi|342872736|gb|EGU75037.1| hypothetical protein FOXB_14443 [Fusarium oxysporum Fo5176]
Length = 627
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/67 (47%), Positives = 46/67 (68%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T+ V++IRD + G+ +C LNY++DG+PF NLL V+P+ D G +
Sbjct: 269 RFLQGPKTNPFSVKRIRDKLAAGQDHCETFLNYRRDGSPFMNLLMVSPLYDSRGVVRYHL 328
Query: 78 GMQVEVS 84
G QV+VS
Sbjct: 329 GAQVDVS 335
>gi|448535723|ref|ZP_21622243.1| HTR-like protein [Halorubrum hochstenium ATCC 700873]
gi|445703224|gb|ELZ55159.1| HTR-like protein [Halorubrum hochstenium ATCC 700873]
Length = 594
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 47/71 (66%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T++ V+++RDA+ + LLNY+KDGT FWN +++ PI D G ++
Sbjct: 307 RFLQGPDTEEASVQQLRDAIDADEPTSVELLNYRKDGTEFWNRVSIAPISDADGTVTHWV 366
Query: 78 GMQVEVSKYTE 88
G Q +++ + E
Sbjct: 367 GFQEDITAFKE 377
>gi|448433144|ref|ZP_21585814.1| HTR-like protein [Halorubrum tebenquichense DSM 14210]
gi|445686546|gb|ELZ38863.1| HTR-like protein [Halorubrum tebenquichense DSM 14210]
Length = 1102
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 47/71 (66%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T++ V+++RDA+ + LLNY+KDGT FWN +++ PI D G ++
Sbjct: 307 RFLQGPDTEEASVQQLRDAIDADEPTSVELLNYRKDGTEFWNRVSIAPISDADGTVTHWV 366
Query: 78 GMQVEVSKYTE 88
G Q +++ + E
Sbjct: 367 GFQEDITAFKE 377
>gi|453328516|dbj|GAC89226.1| PAS/PAC sensor hybrid histidine kinase [Gluconobacter thailandicus
NBRC 3255]
Length = 578
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 39/103 (37%), Positives = 60/103 (58%), Gaps = 14/103 (13%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD N+V ++R+A+ K +LNY+++GTPFWN + + P+ D+ G+ I F
Sbjct: 101 RFLQGAGTDPNDVRQLREAIAECKPVALEILNYRRNGTPFWNAIFMGPVFDEQGELIYFF 160
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
Q++VSK E ++ ALR QK +A+G +T
Sbjct: 161 ASQLDVSKRRE--SEMALRQG------------QKMEAIGQLT 189
>gi|17230367|ref|NP_486915.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
gi|17131969|dbj|BAB74574.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
Length = 1817
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 77/133 (57%), Gaps = 7/133 (5%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFL G +T ++ +E++R A++ GK+ L NY+KDG+ FWN L+V+PI +D+G+ FI
Sbjct: 487 RFLLGNDTQQSAIEELRSALKAGKNCKVILRNYRKDGSLFWNQLSVSPIYNDNGQLSHFI 546
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKR----SQSHI 133
G+Q ++S + + +LR L+ I YD G I + +R S++HI
Sbjct: 547 GIQTDISDRQQA--EASLRRQALTFENI-YDGVIITNLQGQILDWNPAAERMFGYSKNHI 603
Query: 134 RALSLDTTNKLEE 146
S+ T +K++E
Sbjct: 604 CGQSISTLHKVDE 616
>gi|425773120|gb|EKV11492.1| hypothetical protein PDIG_50250 [Penicillium digitatum PHI26]
gi|425782248|gb|EKV20170.1| hypothetical protein PDIP_19490 [Penicillium digitatum Pd1]
Length = 583
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 33/79 (41%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T+ N V ++R+A+ G+ + LNY++DG+PF NLL P+ D G F+
Sbjct: 312 RFLQGPKTNANSVRRLREAIHAGQHHSEMFLNYRRDGSPFMNLLQCAPLCDSHGHVKYFV 371
Query: 78 GMQVEVSKYT-EGVNDKAL 95
G Q++VS +GV+ ++L
Sbjct: 372 GAQIDVSGLAMDGVSMESL 390
>gi|228481103|gb|ACQ42250.1| blue light photoreceptor [Fragaria x ananassa]
Length = 642
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 49/75 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD V+KIR+A+ N +L+NY K G FWN+ + P++D G+ FI
Sbjct: 160 RFLQGPETDPATVKKIREAIDNQTEVTVQLINYTKSGKKFWNVFHLQPMRDHKGEVQYFI 219
Query: 78 GMQVEVSKYTEGVND 92
G+Q++ S++ E + +
Sbjct: 220 GVQLDGSQHIEPLQN 234
>gi|396467456|ref|XP_003837941.1| hypothetical protein LEMA_P119880.1 [Leptosphaeria maculans JN3]
gi|312214506|emb|CBX94497.1| hypothetical protein LEMA_P119880.1 [Leptosphaeria maculans JN3]
Length = 815
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 41/126 (32%), Positives = 66/126 (52%), Gaps = 10/126 (7%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T+++ V + + A GK + LNY++DG+PF NLL + P+ D G FI
Sbjct: 428 RFLQGPKTNRSSVARFKQAAIEGKDHSEVFLNYRRDGSPFMNLLMIAPLLDSRGNLRYFI 487
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRSQSHIRALS 137
G Q++VS + D + + L + D +++E L + Q + +H+
Sbjct: 488 GAQIDVSGLVKDGTDL----DAFQRMLAQQDGKEEEDPL---KDEFQELSEMFNHVE--- 537
Query: 138 LDTTNK 143
LDT K
Sbjct: 538 LDTVRK 543
>gi|220920804|ref|YP_002496105.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
ORS 2060]
gi|219945410|gb|ACL55802.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
ORS 2060]
Length = 814
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 43/67 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQGP+TD V +IR A+ G+ +LNY+KDG PFWN L V P+ D++G+ I F
Sbjct: 77 RLLQGPDTDPATVARIRAAIAEGREIRASILNYRKDGRPFWNELFVCPVFDEAGRLINFF 136
Query: 78 GMQVEVS 84
QV+ +
Sbjct: 137 ASQVDAT 143
>gi|389693838|ref|ZP_10181932.1| PAS domain S-box [Microvirga sp. WSM3557]
gi|388587224|gb|EIM27517.1| PAS domain S-box [Microvirga sp. WSM3557]
Length = 586
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/68 (47%), Positives = 45/68 (66%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TDK V ++R+AVR ++ LLNYK+DGTPFWN + P+ D GK + F
Sbjct: 114 RFLQGALTDKEAVAELRNAVREQRAISVELLNYKRDGTPFWNACFIGPVFDKDGKLLYFF 173
Query: 78 GMQVEVSK 85
Q++V++
Sbjct: 174 ASQLDVTR 181
>gi|448561065|ref|ZP_21634417.1| PAS-PAC-PAC sensing histidine kinase [Haloferax prahovense DSM
18310]
gi|445721297|gb|ELZ72965.1| PAS-PAC-PAC sensing histidine kinase [Haloferax prahovense DSM
18310]
Length = 871
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/67 (47%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ETD VEK+ +A+ G+S L NY+KDGTPFWN L ++P+ +D G+ F+
Sbjct: 206 RFLQGEETDSEPVEKLHEAIEAGESVAVSLTNYRKDGTPFWNELKISPVYED-GELTHFV 264
Query: 78 GMQVEVS 84
G Q + +
Sbjct: 265 GFQTDAT 271
>gi|218532295|ref|YP_002423111.1| signal transduction histidine kinase [Methylobacterium extorquens
CM4]
gi|218524598|gb|ACK85183.1| signal transduction histidine kinase [Methylobacterium extorquens
CM4]
Length = 366
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 45/67 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQGP TD ++ +R A+ G+ + G LLNY+KDGT FWN +T+ P+ D++GK + F
Sbjct: 66 RMLQGPLTDATVLQTMRSALATGRPFEGELLNYRKDGTSFWNGMTINPVCDEAGKVLFFF 125
Query: 78 GMQVEVS 84
Q +++
Sbjct: 126 SAQADMT 132
>gi|429855962|gb|ELA30899.1| hisactophilin c49s mutant phototropin phy3 fusion protein
[Colletotrichum gloeosporioides Nara gc5]
Length = 756
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 33/67 (49%), Positives = 45/67 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T+ V++IRD + G+ + LNY++DG+PF NLL V P+ D G FI
Sbjct: 405 RFLQGPKTNPFSVKRIRDKILAGQEHYETFLNYRRDGSPFMNLLMVAPLYDSRGTVRYFI 464
Query: 78 GMQVEVS 84
G QV+VS
Sbjct: 465 GAQVDVS 471
>gi|387893379|ref|YP_006323676.1| blue-light-activated histidine kinase [Pseudomonas fluorescens
A506]
gi|387160886|gb|AFJ56085.1| blue-light-activated histidine kinase [Pseudomonas fluorescens
A506]
Length = 525
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 47/68 (69%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TDKN + +++ AV C +LNY+KDG+ FWN L ++P+ ++ G+ + F
Sbjct: 72 RFLQGPQTDKNALHQVQRAVEQHHEACVEVLNYRKDGSTFWNELFISPLFNERGQLVYFF 131
Query: 78 GMQVEVSK 85
Q++VS+
Sbjct: 132 ASQLDVSR 139
>gi|350551714|ref|ZP_08920927.1| PAS/PAC sensor hybrid histidine kinase [Thiorhodospira sibirica
ATCC 700588]
gi|349796852|gb|EGZ50635.1| PAS/PAC sensor hybrid histidine kinase [Thiorhodospira sibirica
ATCC 700588]
Length = 1042
Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 50/71 (70%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQ +T++ ++ +R A+ GK L NY+KDGTPFWN L++TP+++++G F+
Sbjct: 189 RFLQADDTEQTALDVLRQALHEGKPSKTLLRNYRKDGTPFWNQLSITPVRNETGTITHFV 248
Query: 78 GMQVEVSKYTE 88
G+Q +V+++ E
Sbjct: 249 GIQNDVTEHLE 259
>gi|408380125|ref|ZP_11177713.1| sensory box histidine kinase [Agrobacterium albertimagni AOL15]
gi|407745966|gb|EKF57494.1| sensory box histidine kinase [Agrobacterium albertimagni AOL15]
Length = 375
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 49/78 (62%), Gaps = 5/78 (6%)
Query: 8 ELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI 66
ELIG C R LQGPETD N V ++R+A+ + +LNY+KDG+ FWN L V+P+
Sbjct: 68 ELIGRNC----RLLQGPETDSNAVARLREAIAAEQDLAIDILNYRKDGSQFWNALFVSPV 123
Query: 67 KDDSGKTIKFIGMQVEVS 84
+D G+ + F Q++ +
Sbjct: 124 RDADGEVVYFFASQLDFT 141
>gi|423691124|ref|ZP_17665644.1| blue-light-activated histidine kinase [Pseudomonas fluorescens
SS101]
gi|387999199|gb|EIK60528.1| blue-light-activated histidine kinase [Pseudomonas fluorescens
SS101]
Length = 531
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 47/68 (69%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TDKN + +++ AV C +LNY+KDG+ FWN L ++P+ ++ G+ + F
Sbjct: 72 RFLQGPQTDKNALHQVQRAVERHHEACVEVLNYRKDGSTFWNELFISPLFNERGQLVYFF 131
Query: 78 GMQVEVSK 85
Q++VS+
Sbjct: 132 ASQLDVSR 139
>gi|322370523|ref|ZP_08045081.1| bacterio-opsin activator [Haladaptatus paucihalophilus DX253]
gi|320549940|gb|EFW91596.1| bacterio-opsin activator [Haladaptatus paucihalophilus DX253]
Length = 621
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 40/112 (35%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +D + V +RDA+ + LLNY+KDGT FWN + + PI+D++G F+
Sbjct: 166 RFLQGEHSDADAVAAMRDAIDAEEPVSVELLNYRKDGTEFWNRVDIAPIRDETGTVTHFV 225
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT-EVIQTVKR 128
G Q ++S+ R L L R E LG +T EV++ R
Sbjct: 226 GFQTDISERKRAEEAAHHRATELEHLLERI-----EGLLGDVTSEVVEAPTR 272
>gi|397642952|gb|EJK75561.1| hypothetical protein THAOC_02710 [Thalassiosira oceanica]
Length = 406
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 41/68 (60%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD+ V+ IR V G LLNYK DGTPFWN V ++D + F+
Sbjct: 322 RFLQGPGTDQAAVDVIRRGVMEGTDTSVCLLNYKADGTPFWNQFFVAALRDAENNVVNFV 381
Query: 78 GMQVEVSK 85
G+Q EVSK
Sbjct: 382 GVQCEVSK 389
>gi|154291032|ref|XP_001546103.1| hypothetical protein BC1G_15404 [Botryotinia fuckeliana B05.10]
Length = 697
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 44/67 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T+ V +IR+ + G+ +C LNY++DG+PF NLL P+ D G FI
Sbjct: 336 RFLQGPKTNPFSVRRIREKIEAGQEHCETFLNYRRDGSPFMNLLMCAPLCDSRGTIRYFI 395
Query: 78 GMQVEVS 84
G QV++S
Sbjct: 396 GAQVDIS 402
>gi|304321705|ref|YP_003855348.1| sensory box histidine kinase [Parvularcula bermudensis HTCC2503]
gi|303300607|gb|ADM10206.1| sensory box histidine kinase [Parvularcula bermudensis HTCC2503]
Length = 361
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 66/125 (52%), Gaps = 13/125 (10%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TDK V+K+R+ ++ LLNY+ DG PF N L + PI DDSG+ F+
Sbjct: 77 RFLQGPDTDKEAVKKMREHLQRAAPVETVLLNYRSDGKPFRNYLRIEPIFDDSGQLSCFL 136
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVI-----QTVKRSQSH 132
G+Q VS D P+ +S L R K L + +I QT +S+ +
Sbjct: 137 GLQQRVS-------DATTSPDAISVQLKEIQHRVKNH-LQLVVSMIRLQSEQTDSKSEMN 188
Query: 133 IRALS 137
RAL+
Sbjct: 189 YRALA 193
>gi|240140855|ref|YP_002965335.1| histidine kinase, domains HK, ATPase and sensory PAS
[Methylobacterium extorquens AM1]
gi|240010832|gb|ACS42058.1| putative histidine kinase, domains HK, ATPase and sensory PAS
[Methylobacterium extorquens AM1]
Length = 351
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 45/67 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQGP TD ++ +R A+ G+ + G LLNY+KDGT FWN +T+ P+ D++GK + F
Sbjct: 51 RMLQGPLTDAAVLQTMRSALATGRPFEGELLNYRKDGTSFWNGMTINPVCDEAGKVLFFF 110
Query: 78 GMQVEVS 84
Q +++
Sbjct: 111 SAQADMT 117
>gi|347835005|emb|CCD49577.1| hypothetical protein [Botryotinia fuckeliana]
Length = 873
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 44/67 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T+ V +IR+ + G+ +C LNY++DG+PF NLL P+ D G FI
Sbjct: 512 RFLQGPKTNPFSVRRIREKIEAGQEHCETFLNYRRDGSPFMNLLMCAPLCDSRGTIRYFI 571
Query: 78 GMQVEVS 84
G QV++S
Sbjct: 572 GAQVDIS 578
>gi|418059569|ref|ZP_12697514.1| signal transduction histidine kinase [Methylobacterium extorquens
DSM 13060]
gi|373566905|gb|EHP92889.1| signal transduction histidine kinase [Methylobacterium extorquens
DSM 13060]
Length = 366
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 45/67 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQGP TD ++ +R A+ G+ + G LLNY+KDGT FWN +T+ P+ D++GK + F
Sbjct: 66 RMLQGPLTDAAVLQTMRSALATGRPFEGELLNYRKDGTSFWNGMTINPVCDEAGKVLFFF 125
Query: 78 GMQVEVS 84
Q +++
Sbjct: 126 SAQADMT 132
>gi|298711143|emb|CBJ32369.1| putative blue light receptor [Ectocarpus siliculosus]
Length = 135
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 49/72 (68%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD ++ KIR+AV+ K C LLNYKKDG+ F N +TP+ D++G F+
Sbjct: 48 RFLQGAKTDPGDIAKIREAVKQNKEACLCLLNYKKDGSTFHNQFFLTPLFDEAGTLAYFL 107
Query: 78 GMQVEVSKYTEG 89
G+QV+V ++G
Sbjct: 108 GIQVQVKTASDG 119
>gi|254409941|ref|ZP_05023721.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196182977|gb|EDX77961.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 776
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 46/67 (68%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +T+ VE+IR A+R + L NY+KDGTPFWN L ++PI+D + I FI
Sbjct: 77 RFLQGVDTNPQVVEQIRQALRTEQEVKVVLKNYRKDGTPFWNELAISPIRDAKERVIYFI 136
Query: 78 GMQVEVS 84
G+Q +++
Sbjct: 137 GVQTDIT 143
>gi|375152042|gb|AFA36479.1| nonphototrophic hypocotyl 1b, partial [Lolium perenne]
Length = 175
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 62/107 (57%), Gaps = 6/107 (5%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ETD+ V+KIR+A+R K +L+NY K G FWNL + P+ D G+ FI
Sbjct: 11 RFLQGSETDQTTVDKIREAIREQKEVTVQLINYTKSGKKFWNLFHLQPMWDQKGELQYFI 70
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQ 124
G+Q++ S + E LR N LS++ A+ + G++ E ++
Sbjct: 71 GVQLDGSDHVE-----PLR-NRLSETTELQSAKLVKATAGNVDEAVR 111
>gi|448484317|ref|ZP_21606024.1| HTR-like protein [Halorubrum arcis JCM 13916]
gi|445820092|gb|EMA69921.1| HTR-like protein [Halorubrum arcis JCM 13916]
Length = 596
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 48/71 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T++ V+++R+A+ +S LLNY+KDGT FWN +++ PI D G ++
Sbjct: 307 RFLQGPDTEEESVQQLREAIDAEESTSVELLNYRKDGTEFWNRVSIAPICDADGAVTHWV 366
Query: 78 GMQVEVSKYTE 88
G Q +++ + E
Sbjct: 367 GFQEDITAFKE 377
>gi|448426524|ref|ZP_21583373.1| HTR-like protein [Halorubrum terrestre JCM 10247]
gi|445679404|gb|ELZ31871.1| HTR-like protein [Halorubrum terrestre JCM 10247]
Length = 596
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 48/71 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T++ V+++R+A+ +S LLNY+KDGT FWN +++ PI D G ++
Sbjct: 307 RFLQGPDTEEESVQQLREAIDAEESTSVELLNYRKDGTEFWNRVSIAPICDADGAVTHWV 366
Query: 78 GMQVEVSKYTE 88
G Q +++ + E
Sbjct: 367 GFQEDITAFKE 377
>gi|441415749|dbj|BAH80322.2| aureochrome1-like protein [Ochromonas danica]
Length = 312
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 45/68 (66%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD VEK+R + G+ LLNY+KDG+ FWN L + ++D G + ++
Sbjct: 231 RFLQGPETDPKAVEKVRKGLERGEDTTVVLLNYRKDGSTFWNQLFIAALRDGEGNVVNYL 290
Query: 78 GMQVEVSK 85
G+Q +VS+
Sbjct: 291 GVQCKVSE 298
>gi|339628695|ref|YP_004720338.1| Diguanylate cyclase [Sulfobacillus acidophilus TPY]
gi|379008857|ref|YP_005258308.1| PAS/PAC sensor-containing diguanylate cyclase [Sulfobacillus
acidophilus DSM 10332]
gi|339286484|gb|AEJ40595.1| Diguanylate cyclase [Sulfobacillus acidophilus TPY]
gi|361055119|gb|AEW06636.1| diguanylate cyclase with PAS/PAC sensor [Sulfobacillus acidophilus
DSM 10332]
Length = 843
Score = 72.8 bits (177), Expect = 4e-11, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 43/68 (63%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQGP+TD IR + G + GR+LNY + GTPFWN L+++P++D G+ FI
Sbjct: 53 RILQGPQTDPETRRTIRQHIDQGIPFFGRILNYHQSGTPFWNQLSISPLRDRDGQITHFI 112
Query: 78 GMQVEVSK 85
Q ++S+
Sbjct: 113 SFQRDISQ 120
>gi|325276367|ref|ZP_08142143.1| histidine kinase [Pseudomonas sp. TJI-51]
gi|324098494|gb|EGB96564.1| histidine kinase [Pseudomonas sp. TJI-51]
Length = 382
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 60/118 (50%), Gaps = 14/118 (11%)
Query: 3 DPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLT 62
D TG EL RFLQGPETD V +RD++ +LNY+KDG+ FWN L
Sbjct: 62 DMTGYELAEILGRNCRFLQGPETDTEVVATLRDSIEQRVDIATEILNYRKDGSSFWNALF 121
Query: 63 VTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
++PI ++ G I Q++VS+ + + ALR QK +ALG +T
Sbjct: 122 ISPIFNERGDLIYHFASQLDVSRRRDA--EDALR------------QAQKMEALGQLT 165
>gi|319782894|ref|YP_004142370.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317168782|gb|ADV12320.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
Length = 382
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 44/67 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TDK VE+IR A+ + +LNY+KDG+ FWN L ++P+ +D G F
Sbjct: 76 RFLQGPKTDKAAVEQIRAAIEDETDVSVDILNYRKDGSTFWNALYISPVSNDKGDLQFFF 135
Query: 78 GMQVEVS 84
Q++VS
Sbjct: 136 ASQLDVS 142
>gi|451852400|gb|EMD65695.1| hypothetical protein COCSADRAFT_139956 [Cochliobolus sativus
ND90Pr]
Length = 853
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T++N V + A R GK + LNY++DG+PF NLL P+ D G FI
Sbjct: 469 RFLQGPKTNRNSVARFGAAAREGKDHSEVFLNYRRDGSPFMNLLMTAPLCDSRGTVRYFI 528
Query: 78 GMQVEVSKYT-EGVNDKALR 96
G Q++V+ EG A R
Sbjct: 529 GAQIDVTGLVKEGTELDAFR 548
>gi|428318054|ref|YP_007115936.1| PAS/PAC sensor signal transduction histidine kinase [Oscillatoria
nigro-viridis PCC 7112]
gi|428241734|gb|AFZ07520.1| PAS/PAC sensor signal transduction histidine kinase [Oscillatoria
nigro-viridis PCC 7112]
Length = 1113
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 32/67 (47%), Positives = 46/67 (68%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD V++IR A++ L NY+KDGT FWN LT++P++D SG FI
Sbjct: 78 RFLQGPDTDGAAVDRIRAALKEQHDCKVVLKNYRKDGTAFWNELTISPVRDSSGIVTHFI 137
Query: 78 GMQVEVS 84
G+Q +++
Sbjct: 138 GVQSDIT 144
>gi|393769090|ref|ZP_10357618.1| signal transduction histidine kinase [Methylobacterium sp. GXF4]
gi|392725331|gb|EIZ82668.1| signal transduction histidine kinase [Methylobacterium sp. GXF4]
Length = 346
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQGP TD EV +I A+ G+ LLNY+KDGTP+W+ +TVTP+ D++G F
Sbjct: 49 RMLQGPGTDPAEVARIHAAIEAGEPVTAELLNYRKDGTPYWSAMTVTPVHDEAGLAY-FY 107
Query: 78 GMQVEVSKYTE 88
Q +++ E
Sbjct: 108 AAQADMTHTRE 118
>gi|302887252|ref|XP_003042514.1| hypothetical protein NECHADRAFT_42185 [Nectria haematococca mpVI
77-13-4]
gi|256723426|gb|EEU36801.1| hypothetical protein NECHADRAFT_42185 [Nectria haematococca mpVI
77-13-4]
Length = 592
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 32/67 (47%), Positives = 44/67 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T+ V +IR+ + GK +C LNY++DG+PF NLL V P+ D G +
Sbjct: 262 RFLQGPKTNPFSVRRIREKLEAGKEHCETFLNYRRDGSPFMNLLMVAPLYDSRGVVRYHL 321
Query: 78 GMQVEVS 84
G QV+VS
Sbjct: 322 GAQVDVS 328
>gi|312195261|ref|YP_004015322.1| PAS/PAC sensor protein [Frankia sp. EuI1c]
gi|311226597|gb|ADP79452.1| putative PAS/PAC sensor protein [Frankia sp. EuI1c]
Length = 628
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 39/129 (30%), Positives = 69/129 (53%), Gaps = 9/129 (6%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP +D+ K+ DAVR + LLNY+KDG+ FWN + + P+ D G+ F+
Sbjct: 76 RFLQGPRSDRATAAKLGDAVRERRPARVELLNYRKDGSTFWNEIVLAPVFDRDGRLTHFV 135
Query: 78 GMQVEVSKYTEG--------VNDKALRPNGLSKSLIRYDARQKEKALGSITE-VIQTVKR 128
G+Q +V+ E ++ R + + + AR + + L + T ++ ++R
Sbjct: 136 GVQDDVTARVEARAEREELLARERRTRSSAELATRVEEAARGRLELLWAATNGMVSALRR 195
Query: 129 SQSHIRALS 137
+ + +RAL+
Sbjct: 196 APAALRALT 204
>gi|326318271|ref|YP_004235943.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323375107|gb|ADX47376.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 544
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 14/103 (13%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD+N V +R+A+ + LLNY+KDG+ FWN L ++P+ + G+ + F
Sbjct: 79 RFLQGPATDRNTVAALREAIEQRREISLELLNYRKDGSTFWNALFISPVYNARGELVYFF 138
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
Q++VS+ + LS++ QK +ALG +T
Sbjct: 139 ASQLDVSRRRDA-------EEALSQA-------QKMEALGQLT 167
>gi|254563364|ref|YP_003070459.1| histidine kinase [Methylobacterium extorquens DM4]
gi|254270642|emb|CAX26646.1| putative histidine kinase, domains HK, ATPase and sensory PAS
[Methylobacterium extorquens DM4]
Length = 351
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 45/67 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQGP TD ++ +R A+ G+ + G LLNY+KDGT FWN +T+ P+ D++GK + F
Sbjct: 51 RMLQGPLTDAAVLQTMRAALATGRPFEGELLNYRKDGTSFWNGMTINPVCDEAGKVLFFF 110
Query: 78 GMQVEVS 84
Q +++
Sbjct: 111 SAQADMT 117
>gi|448452034|ref|ZP_21593127.1| HTR-like protein [Halorubrum litoreum JCM 13561]
gi|445809942|gb|EMA59977.1| HTR-like protein [Halorubrum litoreum JCM 13561]
Length = 596
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 48/71 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T++ V+++R+A+ +S LLNY+KDGT FWN +++ PI D G ++
Sbjct: 307 RFLQGPDTEEESVQELREAIDAEESTSVELLNYRKDGTEFWNRVSIAPICDADGAVTHWV 366
Query: 78 GMQVEVSKYTE 88
G Q +++ + E
Sbjct: 367 GFQEDITAFKE 377
>gi|163853435|ref|YP_001641478.1| PAS sensor protein [Methylobacterium extorquens PA1]
gi|163665040|gb|ABY32407.1| PAS sensor protein [Methylobacterium extorquens PA1]
Length = 366
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 45/67 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQGP TD ++ +R A+ G+ + G LLNY+KDGT FWN +T+ P+ D++GK + F
Sbjct: 66 RMLQGPLTDAAVLQTMRAALATGRPFEGELLNYRKDGTSFWNGMTINPVCDEAGKVLFFF 125
Query: 78 GMQVEVS 84
Q +++
Sbjct: 126 SAQADMT 132
>gi|448441461|ref|ZP_21589124.1| HTR-like protein [Halorubrum saccharovorum DSM 1137]
gi|445688870|gb|ELZ41117.1| HTR-like protein [Halorubrum saccharovorum DSM 1137]
Length = 590
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 47/71 (66%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD+ V ++R+A+ + LLNY+KDGTPFWN ++V PI D G +++
Sbjct: 307 RFLQGKDTDEEPVSRLREAIDAEEPESVELLNYRKDGTPFWNRVSVAPILDGDGSVSEWV 366
Query: 78 GMQVEVSKYTE 88
G Q +++ + E
Sbjct: 367 GFQEDITAFKE 377
>gi|440228645|ref|YP_007335729.1| two-component sensor histidine kinase protein [Rhizobium tropici
CIAT 899]
gi|440040353|gb|AGB73183.1| two-component sensor histidine kinase protein [Rhizobium tropici
CIAT 899]
Length = 368
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Query: 5 TGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTV 63
+ ELIG C R LQGPET ++ V +RDAV G+S +LNYKKDG+ FWN L +
Sbjct: 64 SSDELIGRNC----RILQGPETSRDTVAVVRDAVAGGRSVSVDILNYKKDGSAFWNALFI 119
Query: 64 TPIKDDSGKTIKFIGMQVEVS 84
P+ D G+ F Q++ +
Sbjct: 120 NPVWDRQGQITYFFASQLDFT 140
>gi|145350313|ref|XP_001419556.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579788|gb|ABO97849.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 110
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 49/67 (73%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD+NE+ K+R+A++ G++ L NYKK G F N L++TPI+D G+ + ++
Sbjct: 44 RFLQGPGTDQNELNKLRNAIKKGEAVTVVLKNYKKSGEEFMNQLSLTPIRDADGQVMYYV 103
Query: 78 GMQVEVS 84
G+Q +V+
Sbjct: 104 GIQSDVT 110
>gi|189202218|ref|XP_001937445.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187984544|gb|EDU50032.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 775
Score = 72.4 bits (176), Expect = 5e-11, Method: Composition-based stats.
Identities = 37/110 (33%), Positives = 59/110 (53%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T ++ V + A R GK + LLNY++DG+PF NLL + P+ D G FI
Sbjct: 388 RFLQGPKTSRSTVARFGKAAREGKDHSEVLLNYRRDGSPFMNLLMMAPLLDSRGNLRYFI 447
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVK 127
G Q++VS + D L + R + Q++ +++E+ +
Sbjct: 448 GAQIDVSGLVKDNTDLEAFRRMLDQEEGREEKPQQKDEFQALSEMFNNTE 497
>gi|188582718|ref|YP_001926163.1| signal transduction histidine kinase [Methylobacterium populi
BJ001]
gi|179346216|gb|ACB81628.1| putative signal transduction histidine kinase [Methylobacterium
populi BJ001]
Length = 354
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 46/68 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD + V +IR A+R+ + L+NY+KDG+ F N L ++P+ D+ G + F
Sbjct: 72 RFLQGPETDLDTVARIRAAIRSEQDVSAELVNYRKDGSTFHNALFISPVHDEDGTLLFFF 131
Query: 78 GMQVEVSK 85
Q++VS+
Sbjct: 132 ASQLDVSE 139
>gi|302404624|ref|XP_003000149.1| hisactophilin C49S mutant/phototropin PHY3 fusion protein
[Verticillium albo-atrum VaMs.102]
gi|261360806|gb|EEY23234.1| hisactophilin C49S mutant/phototropin PHY3 fusion protein
[Verticillium albo-atrum VaMs.102]
Length = 586
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 37/94 (39%), Positives = 57/94 (60%), Gaps = 4/94 (4%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T+ V++IRD + GK LNY++DG+PF NLL + P+ D G FI
Sbjct: 248 RFLQGPKTNPFSVQRIRDKLLAGKECYETFLNYRRDGSPFMNLLMMAPLYDSRGTIRYFI 307
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQ 111
G QV+VS G+ ++ + + K + Y+A++
Sbjct: 308 GAQVDVS----GLVKESSGLDAMKKLMAEYEAKE 337
>gi|440468936|gb|ELQ38063.1| hypothetical protein OOU_Y34scaffold00552g17 [Magnaporthe oryzae
Y34]
gi|440480560|gb|ELQ61219.1| hypothetical protein OOW_P131scaffold01198g51 [Magnaporthe oryzae
P131]
Length = 805
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 33/67 (49%), Positives = 45/67 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T+ V++I++ V GK + LNY++DG+PF NLL V P+ D G FI
Sbjct: 399 RFLQGPKTNPFSVKRIKEKVLAGKEHFETFLNYRRDGSPFMNLLMVAPLYDSRGAVRYFI 458
Query: 78 GMQVEVS 84
G QV+VS
Sbjct: 459 GAQVDVS 465
>gi|389627554|ref|XP_003711430.1| hypothetical protein MGG_07517 [Magnaporthe oryzae 70-15]
gi|351643762|gb|EHA51623.1| hypothetical protein MGG_07517 [Magnaporthe oryzae 70-15]
Length = 788
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 33/67 (49%), Positives = 45/67 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T+ V++I++ V GK + LNY++DG+PF NLL V P+ D G FI
Sbjct: 382 RFLQGPKTNPFSVKRIKEKVLAGKEHFETFLNYRRDGSPFMNLLMVAPLYDSRGAVRYFI 441
Query: 78 GMQVEVS 84
G QV+VS
Sbjct: 442 GAQVDVS 448
>gi|159897746|ref|YP_001543993.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
aurantiacus DSM 785]
gi|159890785|gb|ABX03865.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
aurantiacus DSM 785]
Length = 1877
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 41/104 (39%), Positives = 66/104 (63%), Gaps = 10/104 (9%)
Query: 5 TGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLT 62
T +E+IG C RFLQG +TD+ + ++R AVR ++ L NY+KDG+ FWN L
Sbjct: 804 TPEEIIGKNC-----RFLQGDDTDQQGLRELRHAVREKRATRVLLRNYRKDGSLFWNELD 858
Query: 63 VTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPN-GLSKSLI 105
+ P+ D++G+ I FIG+Q +VS+ E +AL+ + G K+++
Sbjct: 859 INPVFDENGELINFIGVQQDVSERVEA--QRALQESLGFQKTMV 900
>gi|397620892|gb|EJK65981.1| hypothetical protein THAOC_13120 [Thalassiosira oceanica]
Length = 535
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 35/77 (45%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD VEKIR+A+ G LLNY+ DGT FWN + ++D G ++
Sbjct: 438 RFLQGPETDPKAVEKIRNAIEEGSDMSVCLLNYRVDGTTFWNQFFIAALRDAGGNITNYV 497
Query: 78 GMQVEVS-KYTEGVNDK 93
G+Q +VS +Y V K
Sbjct: 498 GVQCKVSDQYAASVCKK 514
>gi|378732980|gb|EHY59439.1| non-specific serine/threonine protein kinase [Exophiala
dermatitidis NIH/UT8656]
Length = 658
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 7/113 (6%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP T+ + V ++++A++ GK + LLNY++DG+PF NLL V P+ D G +I
Sbjct: 309 RFLQGPMTNPHSVRRLKEAIQAGKQHQEVLLNYRRDGSPFVNLLMVAPLADTRGVVRYYI 368
Query: 78 GMQVEVSKYTEGVNDK-------ALRPNGLSKSLIRYDARQKEKALGSITEVI 123
G QV+VS + + LR G L + +K L ++E++
Sbjct: 369 GAQVDVSGLVKDCTEMESLQRLLELRARGEDPPLPERPSPEKNDELRELSEML 421
>gi|402074184|gb|EJT69713.1| hypothetical protein GGTG_12596 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 837
Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 32/67 (47%), Positives = 44/67 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T+ N V+++ + + GK LNY++DG+PF NLL V P+ D G FI
Sbjct: 358 RFLQGPKTNPNSVKRLAEKIHAGKECFETFLNYRRDGSPFMNLLMVAPLYDSRGAVRYFI 417
Query: 78 GMQVEVS 84
G QV+VS
Sbjct: 418 GAQVDVS 424
>gi|224102353|ref|XP_002312647.1| predicted protein [Populus trichocarpa]
gi|222852467|gb|EEE90014.1| predicted protein [Populus trichocarpa]
Length = 396
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 68/129 (52%), Gaps = 17/129 (13%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI--KDDSGKTIK 75
R QGP+T++ V +IR+A+R ++ RLLNY+KDGTPFW L ++P+ K+D G +
Sbjct: 67 RIFQGPKTNRKTVMEIREAIREERAVRVRLLNYRKDGTPFWMLFQMSPVFSKEDGG-VVH 125
Query: 76 FIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSI-TEVIQTVKRSQSHIR 134
FIG+QV + + + +D A DA E A GS EV + +
Sbjct: 126 FIGVQVPIRRNKKLTDDGA-------------DAACNEIAFGSCRREVCSDSLVELTRVL 172
Query: 135 ALSLDTTNK 143
AL DT K
Sbjct: 173 ALDTDTNCK 181
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 45/64 (70%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78
FL G +TD + + +++++++ + +LNY+KD + FWNLL ++P+++ +GK F+G
Sbjct: 286 FLNGVDTDSSILHQVQESIQVEQPCTVCILNYRKDKSTFWNLLHMSPVRNATGKIAYFVG 345
Query: 79 MQVE 82
+Q+E
Sbjct: 346 VQME 349
>gi|167648510|ref|YP_001686173.1| signal transduction histidine kinase [Caulobacter sp. K31]
gi|167350940|gb|ABZ73675.1| signal transduction histidine kinase [Caulobacter sp. K31]
Length = 369
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 51/80 (63%)
Query: 5 TGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVT 64
TG +L RFLQG ETD ++V+++R AV G+ LLNY+KDG+ FWN L ++
Sbjct: 58 TGYDLDEVIGRNCRFLQGLETDPDQVDRLRQAVAQGEEVALELLNYRKDGSTFWNALYLS 117
Query: 65 PIKDDSGKTIKFIGMQVEVS 84
P++ ++G+ + F G ++S
Sbjct: 118 PVRGETGEVLYFFGTLRDIS 137
>gi|170722341|ref|YP_001750029.1| putative PAS/PAC sensor protein [Pseudomonas putida W619]
gi|169760344|gb|ACA73660.1| putative PAS/PAC sensor protein [Pseudomonas putida W619]
Length = 148
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 49/67 (73%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + D+ ++ IR A+R+G+ C L NY+KDG+ FWN L+++PI++++ + +I
Sbjct: 54 RFLQGQDHDQEALDAIRQAIRDGRPSCQVLRNYRKDGSLFWNELSISPIRNEADQLTYYI 113
Query: 78 GMQVEVS 84
G+Q +V+
Sbjct: 114 GIQRDVT 120
>gi|344211764|ref|YP_004796084.1| HTR-like protein [Haloarcula hispanica ATCC 33960]
gi|343783119|gb|AEM57096.1| HTR-like protein [Haloarcula hispanica ATCC 33960]
Length = 748
Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 37/103 (35%), Positives = 62/103 (60%), Gaps = 7/103 (6%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ET+ V+ +R A+ + L NY+KDGT FWN +T+ P++DD G + ++
Sbjct: 304 RFLQGEETESEPVDAMRAAIDADEPVSVELRNYRKDGTMFWNQVTIAPVRDDDGTVVNYV 363
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKS---LIRYDARQKEKALG 117
G Q ++++ E ++ LR LS+S L++ D R++ +G
Sbjct: 364 GFQQDITERKE--HEHRLR--ALSESVQNLLQADTREEVAEIG 402
>gi|120612211|ref|YP_971889.1| histidine kinase [Acidovorax citrulli AAC00-1]
gi|120590675|gb|ABM34115.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax citrulli
AAC00-1]
Length = 544
Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 14/103 (13%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD+N V +R+A+ + LLNY+KDG+ FWN L ++P+ + G+ + F
Sbjct: 79 RFLQGPATDRNTVAALREAIDQRREISLELLNYRKDGSTFWNALFISPVYNARGELVYFF 138
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
Q++VS+ + LS++ QK +ALG +T
Sbjct: 139 ASQLDVSRRRDA-------EEALSQA-------QKMEALGQLT 167
>gi|168060156|ref|XP_001782064.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666475|gb|EDQ53128.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 327
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 39/54 (72%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSG 71
RFLQGP+TD V +IR+A++ + Y R+LNYKKD TPFWN L V P++ +G
Sbjct: 274 RFLQGPDTDPEAVREIREAIKAERPYTVRILNYKKDNTPFWNHLHVAPVRSATG 327
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD+ V +IRDA+R ++ +LNY K PFWNL + PI G+ I ++
Sbjct: 62 RFLQGPDTDRRTVVEIRDAIREERACQVLILNYTKYKEPFWNLFHMAPIFSSDGQVIHYV 121
Query: 78 GMQVEVS 84
G+Q ++
Sbjct: 122 GVQTPIA 128
>gi|393723750|ref|ZP_10343677.1| PAS sensor protein [Sphingomonas sp. PAMC 26605]
Length = 368
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD + +IR+ + G + LLNY+KDGT FWN L ++P++D G F
Sbjct: 70 RFLQGPDTDPARIAEIREGIEAGHAVDVDLLNYRKDGTTFWNALYLSPVRDREGVVRFFF 129
Query: 78 GMQVEVSKYTEGVN 91
Q++V+ E N
Sbjct: 130 ASQLDVTDRIEAQN 143
>gi|389643238|ref|XP_003719251.1| hypothetical protein MGG_08735 [Magnaporthe oryzae 70-15]
gi|351639020|gb|EHA46884.1| hypothetical protein MGG_08735 [Magnaporthe oryzae 70-15]
Length = 961
Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 41/103 (39%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQG +TDK V +IR AVR +LNYKK+G PFWNLL + P+ D+ G+ FI
Sbjct: 652 RVLQGKQTDKQAVARIRAAVREETEVVELVLNYKKNGDPFWNLLYIAPLFDEQGQLAFFI 711
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
G QV S D +R +S DA++ G T
Sbjct: 712 GGQVNCSTTIHSSAD-VMRVLSMSSDPSETDAKESPAKPGETT 753
>gi|224000393|ref|XP_002289869.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220975077|gb|EED93406.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 103
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 42/67 (62%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD VEKIR+A+ G LLNY+ DGT FWN + ++D G ++
Sbjct: 37 RFLQGPETDPKAVEKIRNAIEEGSDMSVCLLNYRVDGTTFWNQFFIAALRDAGGNITNYV 96
Query: 78 GMQVEVS 84
G+Q +VS
Sbjct: 97 GVQCKVS 103
>gi|440462673|gb|ELQ32674.1| hypothetical protein OOU_Y34scaffold01075g30 [Magnaporthe oryzae
Y34]
gi|440489849|gb|ELQ69462.1| hypothetical protein OOW_P131scaffold00152g12 [Magnaporthe oryzae
P131]
Length = 961
Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 41/103 (39%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQG +TDK V +IR AVR +LNYKK+G PFWNLL + P+ D+ G+ FI
Sbjct: 652 RVLQGKQTDKQAVARIRAAVREETEVVELVLNYKKNGDPFWNLLYIAPLFDEQGQLAFFI 711
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
G QV S D +R +S DA++ G T
Sbjct: 712 GGQVNCSTTIHSSAD-VMRVLSMSSDPSETDAKESPAKPGETT 753
>gi|365882894|ref|ZP_09422078.1| putative sensor histidine kinase with PAS/PAC and Response
regulator receiver domains [Bradyrhizobium sp. ORS 375]
gi|365288600|emb|CCD94609.1| putative sensor histidine kinase with PAS/PAC and Response
regulator receiver domains [Bradyrhizobium sp. ORS 375]
Length = 534
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 37/130 (28%), Positives = 70/130 (53%), Gaps = 12/130 (9%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD++ ++ +R A+ N + +LNY+K+G+ FWN L ++P+ + G+ + F
Sbjct: 76 RFLQGPDTDRDTIDAVRTAIANRQDIAVEILNYRKNGSAFWNALFISPVYNRDGELVYFF 135
Query: 78 GMQVEVSKYTEG----VNDKALRPNGLSKSLIRYDARQ--------KEKALGSITEVIQT 125
G Q++VS+ + V + + G I +D E G+++E+
Sbjct: 136 GSQLDVSRRRDAESALVQSQKMEAIGQLTGGIAHDFNNILQVIIGYTETLQGAVSELAPR 195
Query: 126 VKRSQSHIRA 135
+R+ +IR+
Sbjct: 196 HRRAVDNIRS 205
>gi|219127104|ref|XP_002183783.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405020|gb|EEC44965.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 103
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 41/67 (61%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD VE+IR A+ G LLNY+ DGT FWN + ++D G F+
Sbjct: 37 RFLQGPETDPKAVERIRKAIEQGNDMSVCLLNYRVDGTTFWNQFFIAALRDAGGNVTNFV 96
Query: 78 GMQVEVS 84
G+Q +VS
Sbjct: 97 GVQCKVS 103
>gi|448677831|ref|ZP_21689021.1| HTR-like protein [Haloarcula argentinensis DSM 12282]
gi|445773506|gb|EMA24539.1| HTR-like protein [Haloarcula argentinensis DSM 12282]
Length = 748
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 39/112 (34%), Positives = 62/112 (55%), Gaps = 9/112 (8%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG T+ V+ +R AV G L NY+KDGT FWN +++ P++DD G + ++
Sbjct: 304 RFLQGEATESEPVDAMRAAVDEGDPVSVELRNYRKDGTMFWNQVSIAPVRDDDGTVVNYV 363
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKS---LIRYDARQKEKALGSITEVIQTV 126
G Q ++++ + R LS+S L++ D R+K +G E +TV
Sbjct: 364 GFQQDITERKQ----HERRLKALSESVQDLLQADTREKVAEIG--VETARTV 409
>gi|449135813|ref|ZP_21771246.1| signal transduction histidine kinase with CheB and CheR activity
[Rhodopirellula europaea 6C]
gi|448885516|gb|EMB15954.1| signal transduction histidine kinase with CheB and CheR activity
[Rhodopirellula europaea 6C]
Length = 1739
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 47/72 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD + V+ IRDA++ + LLNY++DG+ F+N L +TPI+D G F+
Sbjct: 1029 RFLQGPQTDPSNVDMIRDAIQKKQECRVTLLNYRRDGSQFYNDLIITPIQDSQGVVTHFV 1088
Query: 78 GMQVEVSKYTEG 89
G+Q + + E
Sbjct: 1089 GVQNDATDIVEA 1100
>gi|333899393|ref|YP_004473266.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas fulva 12-X]
gi|333114658|gb|AEF21172.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas fulva 12-X]
Length = 534
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 36/103 (34%), Positives = 61/103 (59%), Gaps = 14/103 (13%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ETD++ V ++R+A+ + L+NY+KDG+ FWN L ++P+ +D+G+ I F
Sbjct: 74 RFLQGAETDRSVVAQVREAISKRQEVSVELINYRKDGSTFWNALFISPVYNDAGELIYFF 133
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
Q+++S+ + GL ++ QK +ALG +T
Sbjct: 134 ASQLDISRRRDA-------EEGLRQA-------QKMEALGQLT 162
>gi|325292827|ref|YP_004278691.1| sensory box histidine kinase [Agrobacterium sp. H13-3]
gi|325060680|gb|ADY64371.1| sensory box histidine kinase [Agrobacterium sp. H13-3]
Length = 369
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 5/81 (6%)
Query: 5 TGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTV 63
+ +EL+G C R LQGP+TD V K+R+A+ + +LNY+KDG+ FWN L V
Sbjct: 65 SAEELVGQNC----RLLQGPDTDPGSVTKLREAIAAEQDLAIDILNYRKDGSEFWNALFV 120
Query: 64 TPIKDDSGKTIKFIGMQVEVS 84
+P++D SG I F Q++ +
Sbjct: 121 SPVRDASGTVIYFFASQLDFT 141
>gi|448456461|ref|ZP_21595230.1| bacterio-opsin activator [Halorubrum lipolyticum DSM 21995]
gi|445811937|gb|EMA61934.1| bacterio-opsin activator [Halorubrum lipolyticum DSM 21995]
Length = 667
Score = 72.0 bits (175), Expect = 9e-11, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 42/67 (62%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD VE+I +AV + + NY++DGTPFWN LTV P+ D G ++
Sbjct: 189 RFLQGPGTDPETVERIAEAVAENEEITVEIRNYRRDGTPFWNELTVAPVYDGDGDLAHYV 248
Query: 78 GMQVEVS 84
G Q +V+
Sbjct: 249 GFQNDVT 255
>gi|424891967|ref|ZP_18315547.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WSM2297]
gi|424893803|ref|ZP_18317383.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WSM2297]
gi|393183248|gb|EJC83285.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WSM2297]
gi|393185084|gb|EJC85121.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WSM2297]
Length = 345
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP T V +IR + + + +LNYKK+G PFWN L ++PI D G+ + F
Sbjct: 76 RFLQGPATSPIAVAEIRAGIADEREASVEILNYKKNGEPFWNRLHLSPIHGDDGRILYFF 135
Query: 78 GMQVEVSKY 86
G Q+++++Y
Sbjct: 136 GSQIDMTEY 144
>gi|380476506|emb|CCF44677.1| hypothetical protein CH063_13997, partial [Colletotrichum
higginsianum]
Length = 561
Score = 72.0 bits (175), Expect = 9e-11, Method: Composition-based stats.
Identities = 46/134 (34%), Positives = 71/134 (52%), Gaps = 12/134 (8%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD++ V+++RD+V + +LNY +DGTP+WNLL P+ D SGK ++
Sbjct: 308 RFLQGSLTDRDAVKRLRDSVAREEESLELVLNYHRDGTPYWNLLFTCPLTDASGKLRYYL 367
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRSQSHIRALS 137
G QV++S +GV D L+ KE A G + V + + R+ S R
Sbjct: 368 GGQVDMS---QGVGDYKDLLRILNSGPPPVLDEAKEDASGRESRVSRRMSRAGSRERK-- 422
Query: 138 LDTTNKLEEKRSSI 151
+E+R+S+
Sbjct: 423 -------QERRTSL 429
>gi|119486862|ref|ZP_01620837.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
gi|119456155|gb|EAW37288.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
Length = 1781
Score = 71.6 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 45/133 (33%), Positives = 74/133 (55%), Gaps = 5/133 (3%)
Query: 17 SRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKF 76
+RFLQG + ++ E+E++R+ ++N +S L NY+KDG+ FWN L ++PI D G +
Sbjct: 800 TRFLQGTDNNQPELERLRETLKNQESCTVILRNYRKDGSLFWNELNLSPIYDQQGNLTHY 859
Query: 77 IGMQVEV--SKYTEGVNDKALRPNGLSKSL---IRYDARQKEKALGSITEVIQTVKRSQS 131
+G+Q +V SK E K L + K++ IR E ++TEV Q ++ ++
Sbjct: 860 LGIQNDVTESKLAEEELRKQLERERVIKAVTQRIRESLELNEILNTTVTEVKQVLETDRA 919
Query: 132 HIRALSLDTTNKL 144
I L D T K+
Sbjct: 920 LIYQLYADGTGKV 932
>gi|197311343|gb|ACH61904.1| putative blue light receptor protein [bacterium enrichment culture
clone pWThLOV]
Length = 1204
Score = 71.6 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 48/68 (70%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ + ++R+A+R+G+S L NY+KDG+ F N L + P+ D G+ FI
Sbjct: 480 RFLQGPETDQPALGQVREALRHGRSTTVVLHNYRKDGSRFINELHIAPVHDSHGRVTHFI 539
Query: 78 GMQVEVSK 85
G+Q ++++
Sbjct: 540 GVQTDITE 547
>gi|416407631|ref|ZP_11688282.1| PAS containing protein [Crocosphaera watsonii WH 0003]
gi|357260847|gb|EHJ10190.1| PAS containing protein [Crocosphaera watsonii WH 0003]
Length = 483
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 50/67 (74%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + + E+E+IRD ++ G+S L NY+KDG+ FWN ++++PIKD+SG + ++
Sbjct: 213 RFLQGSDDQQPELEQIRDCLQKGESCHVTLRNYRKDGSLFWNEMSLSPIKDESGNILYYL 272
Query: 78 GMQVEVS 84
G+Q +V+
Sbjct: 273 GVQTDVT 279
>gi|251772557|gb|EES53123.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Leptospirillum ferrodiazotrophum]
Length = 1586
Score = 71.6 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 47/66 (71%)
Query: 20 LQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGM 79
L+GP TD + I A+R G+ + G++LN+ KDG+PFWNLLT++PI++ +G F+G+
Sbjct: 654 LRGPGTDPETLHDIGQAIRRGEGFHGQVLNFTKDGSPFWNLLTISPIRNRAGTVSHFVGV 713
Query: 80 QVEVSK 85
++S+
Sbjct: 714 LRDISE 719
>gi|409990612|ref|ZP_11273963.1| multi-sensor signal transduction histidine kinase [Arthrospira
platensis str. Paraca]
gi|409938523|gb|EKN79836.1| multi-sensor signal transduction histidine kinase [Arthrospira
platensis str. Paraca]
Length = 1240
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 53/79 (67%), Gaps = 2/79 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T+++ + IR A++ K L NY+KDG+ FWN L ++P++D GK FI
Sbjct: 393 RFLQGPDTNRDSIAIIRRAIKQEKGCKVNLKNYRKDGSCFWNELAISPVRDHQGKLTHFI 452
Query: 78 GMQVEVSKYTEGVNDKALR 96
G+Q ++++ + ++ ALR
Sbjct: 453 GIQTDITERKQ--SEDALR 469
>gi|330931902|ref|XP_003303581.1| hypothetical protein PTT_15841 [Pyrenophora teres f. teres 0-1]
gi|311320335|gb|EFQ88319.1| hypothetical protein PTT_15841 [Pyrenophora teres f. teres 0-1]
Length = 777
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 36/110 (32%), Positives = 59/110 (53%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T ++ V + A R GK + +LNY++DG+PF NLL + P+ D G FI
Sbjct: 390 RFLQGPKTSRSTVARFGKAAREGKDHSEVMLNYRRDGSPFMNLLMMAPLLDSRGNLRYFI 449
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVK 127
G Q++VS + D L + R + Q++ +++E+ +
Sbjct: 450 GAQIDVSGLVKDNTDLEAFRRMLDQEEGREEKPQQKDEFQALSEMFNNTE 499
>gi|291570657|dbj|BAI92929.1| two-component sensor histidine kinase [Arthrospira platensis
NIES-39]
Length = 1240
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 53/79 (67%), Gaps = 2/79 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T+++ + IR A++ K L NY+KDG+ FWN L ++P++D GK FI
Sbjct: 393 RFLQGPDTNRDSIAIIRRAIKQEKGCKVNLKNYRKDGSCFWNELAISPVRDHQGKLTHFI 452
Query: 78 GMQVEVSKYTEGVNDKALR 96
G+Q ++++ + ++ ALR
Sbjct: 453 GIQTDITERKQ--SEDALR 469
>gi|219118462|ref|XP_002180003.1| hypothetical protein PHATRDRAFT_51933 [Phaeodactylum tricornutum
CCAP 1055/1]
gi|217408260|gb|EEC48194.1| hypothetical protein PHATRDRAFT_51933 [Phaeodactylum tricornutum
CCAP 1055/1]
Length = 142
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 41/68 (60%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD++ VE IR + G LLNYK DGTPFWN V ++D + +
Sbjct: 47 RFLQGPGTDQSAVEVIRKGITEGVDTSVCLLNYKADGTPFWNQFFVASLRDAENNVVNHV 106
Query: 78 GMQVEVSK 85
G+Q EVSK
Sbjct: 107 GVQCEVSK 114
>gi|398836637|ref|ZP_10593969.1| PAS domain S-box [Herbaspirillum sp. YR522]
gi|398211118|gb|EJM97741.1| PAS domain S-box [Herbaspirillum sp. YR522]
Length = 549
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 7/87 (8%)
Query: 1 MSDPTGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFW 58
M+ T E+IG C RFLQGPETD+ V +I A+ + +LNY+KDG+ FW
Sbjct: 73 MTGYTRDEVIGRNC-----RFLQGPETDRAVVRQIGSALAERREIATEILNYRKDGSTFW 127
Query: 59 NLLTVTPIKDDSGKTIKFIGMQVEVSK 85
N L ++P+ D G+ + F G Q+++S+
Sbjct: 128 NALFISPVYDRDGELVYFFGSQLDISR 154
>gi|421610035|ref|ZP_16051219.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
activity [Rhodopirellula baltica SH28]
gi|408499093|gb|EKK03568.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
activity [Rhodopirellula baltica SH28]
Length = 1637
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 62/105 (59%), Gaps = 13/105 (12%)
Query: 1 MSDPTG---KELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTP 56
+D TG +E+IG C RFLQG TDK V +IR A+ G+S + NY+K+G P
Sbjct: 1019 FTDMTGFSEQEIIGRNC----RFLQGEHTDKETVLRIRRALGRGESVRELIKNYRKNGEP 1074
Query: 57 FWNLLTVTPIKDDSGKTIKFIGMQVEVSKYTEGV-----NDKALR 96
FWN L +TP+ D++G F+G+Q +V++ E N++ +R
Sbjct: 1075 FWNDLYITPVHDENGILTHFVGVQNDVTERIEAARQTETNERTIR 1119
>gi|322712912|gb|EFZ04485.1| hypothetical protein MAA_01559 [Metarhizium anisopliae ARSEF 23]
Length = 821
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/75 (45%), Positives = 45/75 (60%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP T+ V +IR+ + NG + LNY++DGTPF NL+ + P+ D G FI
Sbjct: 279 RFLQGPYTNPFSVTRIREKIENGIEHYETFLNYRRDGTPFMNLVMIAPLYDSRGVIRYFI 338
Query: 78 GMQVEVSKYTEGVND 92
G QV+VS G D
Sbjct: 339 GAQVDVSGLAMGCYD 353
>gi|452747828|ref|ZP_21947619.1| sensory box protein [Pseudomonas stutzeri NF13]
gi|452008298|gb|EME00540.1| sensory box protein [Pseudomonas stutzeri NF13]
Length = 146
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 52/74 (70%), Gaps = 2/74 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLL-NYKKDGTPFWNLLTVTPIKDDSGKTIKF 76
RFLQG + D+ ++ IRDA++N + C +++ NY+KDGTPFWN L++TP+ +++ + F
Sbjct: 54 RFLQGEDRDQPALQAIRDAIKNNQP-CRQIIRNYRKDGTPFWNELSITPVFNEADQLTYF 112
Query: 77 IGMQVEVSKYTEGV 90
IG+Q V+ E +
Sbjct: 113 IGIQKNVTAEVEAL 126
>gi|365887921|ref|ZP_09426733.1| putative sensor histidine kinase with PAS/PAC and Response
regulator receiver domains [Bradyrhizobium sp. STM 3809]
gi|365336463|emb|CCD99264.1| putative sensor histidine kinase with PAS/PAC and Response
regulator receiver domains [Bradyrhizobium sp. STM 3809]
Length = 534
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 47/68 (69%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD++ ++ +R A+ N + +LNY+K+G FWN L ++P+ + G+ + F
Sbjct: 76 RFLQGPDTDRDTIDAVRTAIANRQDIAVEILNYRKNGAAFWNALFISPVYNRDGELVYFF 135
Query: 78 GMQVEVSK 85
G Q++VS+
Sbjct: 136 GSQLDVSR 143
>gi|448563671|ref|ZP_21635598.1| PAS sensor protein [Haloferax prahovense DSM 18310]
gi|445717610|gb|ELZ69324.1| PAS sensor protein [Haloferax prahovense DSM 18310]
Length = 732
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 45/69 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQGP+T + + E+ R+A+ + + LLNY++DGTPFWN +TP+ D G +I
Sbjct: 436 RVLQGPDTAEEDCERFREAIADEEPCSVELLNYRRDGTPFWNQSEITPVHGDDGSVTNYI 495
Query: 78 GMQVEVSKY 86
G Q EV+++
Sbjct: 496 GFQREVTEH 504
>gi|392307758|ref|ZP_10270292.1| sensor protein [Pseudoalteromonas citrea NCIMB 1889]
Length = 1105
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 4/86 (4%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +T K+ V +IR A+ K + +LNYK DGT FWN L ++P+ D+ G F+
Sbjct: 481 RFLQGKDTSKDAVAEIRSALSQRKKHRVEILNYKADGTAFWNSLQISPVFDEGGALTAFV 540
Query: 78 GMQVEVSKYTEG----VNDKALRPNG 99
G+Q ++S E + KA+ N
Sbjct: 541 GIQQDISDRIESQQALIEAKAMAENA 566
>gi|328850959|gb|EGG00118.1| hypothetical protein MELLADRAFT_118111 [Melampsora larici-populina
98AG31]
Length = 764
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 63/116 (54%), Gaps = 8/116 (6%)
Query: 5 TGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVT 64
TG + G RFLQGP+T+ N +E++R ++ G+ LLNY+ DGTPF LLT+
Sbjct: 429 TGYDSKGIIGRNCRFLQGPKTNPNSIERLRKGLQAGEPCVELLLNYRSDGTPFQCLLTIL 488
Query: 65 PIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
P+ D G +IG QV V+ AL+ G S++R A Q + + ++T
Sbjct: 489 PLFDQKGGLTYYIGGQVNVT--------GALKAFGDLASVVRPPADQSQPKIQTLT 536
>gi|384248305|gb|EIE21789.1| hypothetical protein COCSUDRAFT_17195 [Coccomyxa subellipsoidea
C-169]
Length = 143
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 48/68 (70%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD+ +E++R A R G++ +L+NY+K+G F N L+VTPI D +G ++
Sbjct: 44 RFLQGPGTDEAPLEELRRATRQGQACVVQLMNYRKNGDAFVNYLSVTPIHDSAGVLTHYV 103
Query: 78 GMQVEVSK 85
G+Q ++++
Sbjct: 104 GIQSDITQ 111
>gi|390167412|ref|ZP_10219402.1| PAS/PAC sensor hybrid histidine kinase [Sphingobium indicum B90A]
gi|389589962|gb|EIM67968.1| PAS/PAC sensor hybrid histidine kinase [Sphingobium indicum B90A]
Length = 572
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 36/103 (34%), Positives = 58/103 (56%), Gaps = 14/103 (13%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD+ V +R+AV ++ +LNY++DG+PFWN + V P+ DD G I F
Sbjct: 105 RFLQGTDTDRETVRALREAVAAQEAISTEILNYRRDGSPFWNAVFVAPVYDDDGTLIYFF 164
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
Q++V++ +++A R QK +A+G +T
Sbjct: 165 ASQLDVTRRRS--SEQAFR------------QAQKMEAIGQLT 193
>gi|30678020|ref|NP_849928.1| protein TWIN LOV 1 [Arabidopsis thaliana]
gi|18146960|dbj|BAB83170.1| twin LOV protein 1 [Arabidopsis thaliana]
gi|330250519|gb|AEC05613.1| protein TWIN LOV 1 [Arabidopsis thaliana]
Length = 397
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 53/80 (66%), Gaps = 2/80 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFL G +TD + + ++++ + G+S ++LNY+KD + FWNLL ++P+++ SGKT F+
Sbjct: 297 RFLSGVDTDSSVLYEMKECILKGQSCTVQILNYRKDKSSFWNLLHISPVRNASGKTAYFV 356
Query: 78 GMQVEVSKYTEGVNDKALRP 97
G+QVE S K LRP
Sbjct: 357 GVQVEAS--CRNTEIKELRP 374
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI--KDDSGKTIK 75
+ QGP+T++ + +IR+A+R +S LLNY+K G+PFW L + P+ KDD GK
Sbjct: 75 KVFQGPKTNRRSIMEIREAIREERSVQVSLLNYRKSGSPFWMLFHMCPVFGKDD-GKVTN 133
Query: 76 FIGMQVEVS 84
F+ +QV +S
Sbjct: 134 FVAVQVPIS 142
>gi|220926021|ref|YP_002501323.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
ORS 2060]
gi|219950628|gb|ACL61020.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
ORS 2060]
Length = 559
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 14/103 (13%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD V K+R+AV K +LNY++DGTPFWN + + P+ D +G+ I F
Sbjct: 81 RFLQGSGTDPEHVAKLREAVHERKPIAIEILNYRRDGTPFWNAVFMGPVHDPAGEVIYFF 140
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
Q++V++ E ++ QK +A+G +T
Sbjct: 141 ASQLDVTQRREAEQ--------------QFRQAQKMEAIGQLT 169
>gi|424794274|ref|ZP_18220263.1| Sensory box histidine kinase/response regulator [Xanthomonas
translucens pv. graminis ART-Xtg29]
gi|422796051|gb|EKU24636.1| Sensory box histidine kinase/response regulator [Xanthomonas
translucens pv. graminis ART-Xtg29]
Length = 542
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/122 (32%), Positives = 69/122 (56%), Gaps = 21/122 (17%)
Query: 1 MSDPTGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFW 58
M+ + +EL+G C RFLQGP+TD++ V+ +R+A+ +LNY+KDG+ FW
Sbjct: 63 MTGYSSEELLGNNC-----RFLQGPDTDRDTVDSVREAIAARSEVAVEILNYRKDGSSFW 117
Query: 59 NLLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGS 118
N L ++P+ ++ + + + G Q++VS+ + + ALR QK +ALG
Sbjct: 118 NALFISPVYNEHSELVYYFGSQLDVSRRRD--TEDALR------------QAQKMEALGQ 163
Query: 119 IT 120
+T
Sbjct: 164 LT 165
>gi|427410482|ref|ZP_18900684.1| PAS domain S-box protein [Sphingobium yanoikuyae ATCC 51230]
gi|425712615|gb|EKU75630.1| PAS domain S-box protein [Sphingobium yanoikuyae ATCC 51230]
Length = 460
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 50/79 (63%), Gaps = 5/79 (6%)
Query: 7 KELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTP 65
+E+IG C RFLQGP+TD+N+V ++RDA+ LLNYKKDGT FWN + V+P
Sbjct: 29 QEIIGRNC----RFLQGPDTDRNDVARLRDAIAAKTLIELDLLNYKKDGTTFWNRVLVSP 84
Query: 66 IKDDSGKTIKFIGMQVEVS 84
+ D G+ F Q +V+
Sbjct: 85 VFDGEGQLSYFFASQFDVT 103
>gi|448659232|ref|ZP_21683200.1| HTR-like protein [Haloarcula californiae ATCC 33799]
gi|445760734|gb|EMA11991.1| HTR-like protein [Haloarcula californiae ATCC 33799]
Length = 748
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/112 (33%), Positives = 63/112 (56%), Gaps = 9/112 (8%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG T+ V+ +R A+ G+ L NY+KDGT FWN +++ P++DD G + ++
Sbjct: 304 RFLQGEATESEPVDAMRAAIDEGEPVSVELRNYRKDGTMFWNQVSIAPVRDDDGTVVNYV 363
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKS---LIRYDARQKEKALGSITEVIQTV 126
G Q ++++ E R LS+S L++ D R++ +G E +TV
Sbjct: 364 GFQRDITERKE----HERRLKALSESVQDLLQADTREEVAEIG--VETARTV 409
>gi|359779999|ref|ZP_09283226.1| histidine kinase [Pseudomonas psychrotolerans L19]
gi|359372615|gb|EHK73179.1| histidine kinase [Pseudomonas psychrotolerans L19]
Length = 538
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 14/103 (13%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T + + +IR+A+R + LLNY+KDG+ FWN L ++P+ D +G+ F
Sbjct: 77 RFLQGPDTRQEHIAEIRNAIREQRDCDIELLNYRKDGSTFWNALFISPVLDPAGQLRYFF 136
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
Q++VS+ + + ALR QK +ALG +T
Sbjct: 137 ASQLDVSRRRDA--EDALR------------QAQKMEALGQLT 165
>gi|448472546|ref|ZP_21601170.1| bacterio-opsin activator [Halorubrum aidingense JCM 13560]
gi|445819850|gb|EMA69684.1| bacterio-opsin activator [Halorubrum aidingense JCM 13560]
Length = 667
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD VE++ A++ + NY++DGTPFWN LTV P+ DD G+ ++
Sbjct: 189 RFLQGPGTDPMTVERLSKAIQREDQITVEIRNYRRDGTPFWNELTVAPVYDDDGELAHYV 248
Query: 78 GMQVEVSK 85
G Q ++++
Sbjct: 249 GFQNDITE 256
>gi|448666702|ref|ZP_21685347.1| HTR-like protein [Haloarcula amylolytica JCM 13557]
gi|445771833|gb|EMA22889.1| HTR-like protein [Haloarcula amylolytica JCM 13557]
Length = 748
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/112 (35%), Positives = 63/112 (56%), Gaps = 9/112 (8%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ET+ V+ +R AV + L NY+KDGT FWN +T+ P++DD G + +
Sbjct: 304 RFLQGEETESEPVDTMRAAVDEDEPVSVELRNYRKDGTMFWNQVTIAPVRDDDGTVVNHV 363
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKS---LIRYDARQKEKALGSITEVIQTV 126
G Q ++++ E + R LS+S L++ D R++ +G E +TV
Sbjct: 364 GFQQDITERKEHEH----RLKALSESVQDLLQADTREEVAEIG--VETARTV 409
>gi|255073407|ref|XP_002500378.1| predicted protein [Micromonas sp. RCC299]
gi|226515641|gb|ACO61636.1| predicted protein, partial [Micromonas sp. RCC299]
Length = 101
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD+ V +R+A+ GK + GRL+NY K+GT N L ++P++D+ G FI
Sbjct: 39 RFLQGPGTDRETVRAMREAIAKGKEFHGRLMNYHKNGTSLVNSLVMSPLRDEKGVVTHFI 98
Query: 78 GMQ 80
G+Q
Sbjct: 99 GIQ 101
>gi|448327694|ref|ZP_21517016.1| bacterio-opsin activator [Natrinema versiforme JCM 10478]
gi|445617323|gb|ELY70921.1| bacterio-opsin activator [Natrinema versiforme JCM 10478]
Length = 631
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 46/72 (63%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP++D++ + ++ A+ + L NY+KDGT FWN +T+ PI+DD G+ ++
Sbjct: 178 RFLQGPDSDEDAIAEMAAAIDEDRPITVELTNYRKDGTEFWNEVTIAPIRDDEGRVTNYV 237
Query: 78 GMQVEVSKYTEG 89
G Q +V+ E
Sbjct: 238 GFQNDVTSRKEA 249
>gi|398411038|ref|XP_003856864.1| K+-channel ERG-like protein [Zymoseptoria tritici IPO323]
gi|339476749|gb|EGP91840.1| K+-channel ERG-like protein [Zymoseptoria tritici IPO323]
Length = 619
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 45/71 (63%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP T V ++ A+ G+ C +LNY++DG+PF NLL + P+ D+ GK ++
Sbjct: 241 RFLQGPNTSPASVRRLVAAITAGQELCETILNYRRDGSPFVNLLMIAPLYDNKGKVRYYL 300
Query: 78 GMQVEVSKYTE 88
G Q++VS E
Sbjct: 301 GAQIDVSGLIE 311
>gi|448503726|ref|ZP_21613355.1| HTR-like protein [Halorubrum coriense DSM 10284]
gi|445691927|gb|ELZ44110.1| HTR-like protein [Halorubrum coriense DSM 10284]
Length = 594
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 47/71 (66%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T++ V+++RDA+ LLNY+KDGT FWN +++ PI D G ++
Sbjct: 307 RFLQGPDTEEASVQELRDAIDADDPTTVELLNYRKDGTEFWNRVSIAPICDADGSVTHWV 366
Query: 78 GMQVEVSKYTE 88
G Q +++++ +
Sbjct: 367 GFQEDITEFKQ 377
>gi|367474602|ref|ZP_09474098.1| putative sensor histidine kinase with PAS/PAC and Response
regulator receiver domains [Bradyrhizobium sp. ORS 285]
gi|365273096|emb|CCD86566.1| putative sensor histidine kinase with PAS/PAC and Response
regulator receiver domains [Bradyrhizobium sp. ORS 285]
Length = 534
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 47/68 (69%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD++ ++ +R A+ N + +LNY+K+G FWN L ++P+ + G+ + F
Sbjct: 76 RFLQGPDTDRDTIDAVRTAIANRQDIAVEILNYRKNGAAFWNALFISPVYNRDGELVYFF 135
Query: 78 GMQVEVSK 85
G Q++VS+
Sbjct: 136 GSQLDVSR 143
>gi|448465905|ref|ZP_21598953.1| histidine kinase [Halorubrum kocurii JCM 14978]
gi|445814843|gb|EMA64800.1| histidine kinase [Halorubrum kocurii JCM 14978]
Length = 493
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/131 (30%), Positives = 71/131 (54%), Gaps = 11/131 (8%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG T+ V IR+A+ + + +LNY+ +G FWN LTV PI+D++G I+++
Sbjct: 205 RFLQGEGTNPETVATIREAIDDERPVSVDILNYRANGQKFWNQLTVAPIRDETGAVIRYV 264
Query: 78 GMQVEVSKYTEGVNDKALRPNGLS--KSLIRYDARQKEKALGSITEVIQTVKRSQSHIRA 135
G Q +++ ++ LR L ++ ++ R K + TE+++ + R+
Sbjct: 265 GFQTDIT-------ERKLRERRLEVMGRVLNHNLRNKMNLIEGYTELLRAEPDEEERRRS 317
Query: 136 LSL--DTTNKL 144
L + DTT+ L
Sbjct: 318 LDVVADTTDDL 328
>gi|310790614|gb|EFQ26147.1| hypothetical protein GLRG_01291 [Glomerella graminicola M1.001]
Length = 681
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/67 (47%), Positives = 44/67 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T+ V+++R+ GK + LNY++DG+PF NLL V P+ D G FI
Sbjct: 289 RFLQGPKTNPYSVKRLREKCLAGKEHYETFLNYRRDGSPFMNLLMVAPLYDSRGTVRYFI 348
Query: 78 GMQVEVS 84
G QV+VS
Sbjct: 349 GAQVDVS 355
>gi|388583576|gb|EIM23877.1| hypothetical protein WALSEDRAFT_66770 [Wallemia sebi CBS 633.66]
Length = 753
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/67 (47%), Positives = 45/67 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP T V++IRDA+ N + LLNY++DGTPF+ L+ + P++D G+ FI
Sbjct: 426 RFLQGPGTAPAAVQRIRDALNNAEPITELLLNYRRDGTPFFCLVNIIPLRDTKGQVAYFI 485
Query: 78 GMQVEVS 84
G QV V+
Sbjct: 486 GGQVNVT 492
>gi|414070614|ref|ZP_11406596.1| sensor protein [Pseudoalteromonas sp. Bsw20308]
gi|410806922|gb|EKS12906.1| sensor protein [Pseudoalteromonas sp. Bsw20308]
Length = 1098
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 46/68 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQGP TDK + I++A++ K+ ++NYKKDGT FWN L ++P+ D+ K F+
Sbjct: 481 RVLQGPNTDKKSISVIKNAIKTLKTQRIEIVNYKKDGTAFWNSLQISPVFDEHSKLTAFV 540
Query: 78 GMQVEVSK 85
G+Q +++K
Sbjct: 541 GIQQDITK 548
>gi|193214461|ref|YP_001995660.1| PAS/PAC sensor protein [Chloroherpeton thalassium ATCC 35110]
gi|193087938|gb|ACF13213.1| putative PAS/PAC sensor protein [Chloroherpeton thalassium ATCC
35110]
Length = 190
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 48/68 (70%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPET+K + IR+++ GK L N+KK+G FWN L++ PI+D++G+ F+
Sbjct: 58 RFLQGPETNKEASQMIRESLGTGKHCVVELRNHKKNGEAFWNRLSLNPIRDENGEITHFV 117
Query: 78 GMQVEVSK 85
G+Q ++++
Sbjct: 118 GIQSDITE 125
>gi|322433264|ref|YP_004210485.1| PAS/PAC sensor signal transduction histidine kinase [Granulicella
tundricola MP5ACTX9]
gi|321165656|gb|ADW71358.1| PAS/PAC sensor signal transduction histidine kinase [Granulicella
tundricola MP5ACTX9]
Length = 519
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 48/71 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFL+G E + + +RDA++N + L N++KDGTPFWN L+++PI DD G+ ++
Sbjct: 200 RFLEGNERSQPALAIVRDALKNRRKGLAVLKNFRKDGTPFWNELSLSPIMDDEGQLTHYV 259
Query: 78 GMQVEVSKYTE 88
G+Q +V++ E
Sbjct: 260 GIQTDVTQRVE 270
>gi|422421423|ref|ZP_16498376.1| blue-light photoreceptor [Listeria seeligeri FSL S4-171]
gi|313638865|gb|EFS03923.1| blue-light photoreceptor [Listeria seeligeri FSL S4-171]
Length = 253
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
FLQG +TD+ EV+K+RDAV+N + L NY+KDG+ F N LT+ PI DD+G + F+
Sbjct: 57 HFLQGEDTDQEEVKKVRDAVKNKTTTTALLKNYRKDGSSFMNELTIEPIYDDNGH-LYFV 115
Query: 78 GMQVEVS 84
G+Q +++
Sbjct: 116 GIQKDIT 122
>gi|359303064|gb|AEV23113.1| flavin mononucleotide-based fluorescent protein [synthetic
construct]
Length = 148
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 54/87 (62%), Gaps = 5/87 (5%)
Query: 3 DPTGKELIGCC-----LLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPF 57
+P + L G C +RFLQG + D+ + IR+A+R G+ C L NY+KDG+ F
Sbjct: 34 NPAFERLTGYCADDILYQDARFLQGEDHDQPGIAIIREAIREGRPCCQVLRNYRKDGSLF 93
Query: 58 WNLLTVTPIKDDSGKTIKFIGMQVEVS 84
WN L++TP+ +++ + +IG+Q +V+
Sbjct: 94 WNELSITPVHNEADQLTYYIGIQRDVT 120
>gi|424917421|ref|ZP_18340785.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WSM597]
gi|392853597|gb|EJB06118.1| PAS domain S-box [Rhizobium leguminosarum bv. trifolii WSM597]
Length = 345
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 43/69 (62%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP T V +IR ++ + +LNYKK G PFWN L ++PI D G+ + F
Sbjct: 76 RFLQGPATSPIAVAEIRASIAEERDVSVEILNYKKSGEPFWNRLHLSPIHGDDGRILYFF 135
Query: 78 GMQVEVSKY 86
G Q+++++Y
Sbjct: 136 GSQIDMTEY 144
>gi|302887177|ref|XP_003042477.1| hypothetical protein NECHADRAFT_88949 [Nectria haematococca mpVI
77-13-4]
gi|302890713|ref|XP_003044240.1| hypothetical protein NECHADRAFT_88657 [Nectria haematococca mpVI
77-13-4]
gi|256723388|gb|EEU36764.1| hypothetical protein NECHADRAFT_88949 [Nectria haematococca mpVI
77-13-4]
gi|256725161|gb|EEU38527.1| hypothetical protein NECHADRAFT_88657 [Nectria haematococca mpVI
77-13-4]
Length = 596
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 44/67 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T+ + +IR+ + GK +C LNY++DG+PF NLL V P+ D G +
Sbjct: 339 RFLQGPKTNPFSIRRIREKLEAGKEHCETFLNYRRDGSPFINLLIVAPLYDSRGIVRYHL 398
Query: 78 GMQVEVS 84
G QV+VS
Sbjct: 399 GAQVDVS 405
>gi|418408140|ref|ZP_12981456.1| sensory box histidine kinase [Agrobacterium tumefaciens 5A]
gi|358005054|gb|EHJ97380.1| sensory box histidine kinase [Agrobacterium tumefaciens 5A]
Length = 369
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 7/82 (8%)
Query: 5 TGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLT 62
+ +EL+G C R LQGP+TD V K+R+A+ + +LNY+KDG+ FWN L
Sbjct: 65 SAEELVGQNC-----RLLQGPDTDPGSVTKLREAIAAEQDLAIDILNYRKDGSEFWNALF 119
Query: 63 VTPIKDDSGKTIKFIGMQVEVS 84
V+P++D +G I F Q++ +
Sbjct: 120 VSPVRDAAGTVIYFFASQLDFT 141
>gi|378729746|gb|EHY56205.1| non-specific serine/threonine protein kinase [Exophiala
dermatitidis NIH/UT8656]
Length = 1002
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 47/146 (32%), Positives = 69/146 (47%), Gaps = 17/146 (11%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP T + V ++R ++ G+ LLNY++DG PF NLL + P+ DD G I
Sbjct: 355 RFLQGPRTKRESVARLRRSIVEGQGISETLLNYRRDGRPFINLLMIAPLHDDKGNVKYHI 414
Query: 78 GMQVEVSKYTEG------------VNDKALRPNGLSKSLIRYDA--RQKEKALGSITEVI 123
G Q +V+ E + R L+ + + D QK +AL + E+
Sbjct: 415 GAQADVTGLVERGKGLVGFERYLVTQEIEKREQELNSKIGKEDPVHTQKSRALAKLRELS 474
Query: 124 QTVKRSQSHI---RALSLDTTNKLEE 146
QT +S I ++ S TT EE
Sbjct: 475 QTFDLEESAIVRSQSRSASTTRNGEE 500
>gi|374703602|ref|ZP_09710472.1| putative PAS/PAC sensor protein [Pseudomonas sp. S9]
Length = 152
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 49/72 (68%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + D+ ++ IRDA++ GK L N++KDG+PFWN L++TPI ++S + FI
Sbjct: 54 RFLQGGDRDQEGLQLIRDALKQGKPCRQVLRNFRKDGSPFWNELSITPIYNESDNLVYFI 113
Query: 78 GMQVEVSKYTEG 89
G+Q V++ +
Sbjct: 114 GIQKNVTEQVQA 125
>gi|146343422|ref|YP_001208470.1| histidine kinase [Bradyrhizobium sp. ORS 278]
gi|146196228|emb|CAL80255.1| putative sensor histidine kinase with PAS/PAC and Response
regulator receiver domains [Bradyrhizobium sp. ORS 278]
Length = 534
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 47/68 (69%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD++ ++ +R A+ N + +LNY+K+G FWN L ++P+ + +G + F
Sbjct: 76 RFLQGPDTDRDTIDAVRTAIANRQDIAVEVLNYRKNGAAFWNALFISPVYNRNGDLVYFF 135
Query: 78 GMQVEVSK 85
G Q++VS+
Sbjct: 136 GSQLDVSR 143
>gi|359454681|ref|ZP_09243954.1| sensor protein [Pseudoalteromonas sp. BSi20495]
gi|358048281|dbj|GAA80203.1| sensor protein [Pseudoalteromonas sp. BSi20495]
Length = 1098
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 46/68 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQGP TDK + I++A++ K+ ++NYKKDGT FWN L ++P+ D+ K F+
Sbjct: 481 RALQGPNTDKKSISVIKNAIKTLKTQRVEIVNYKKDGTAFWNSLQISPVFDEHSKLTAFV 540
Query: 78 GMQVEVSK 85
G+Q +++K
Sbjct: 541 GIQQDITK 548
>gi|448587044|ref|ZP_21648796.1| PAS sensor protein [Haloferax gibbonsii ATCC 33959]
gi|445724264|gb|ELZ75898.1| PAS sensor protein [Haloferax gibbonsii ATCC 33959]
Length = 732
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQGP+T + + E+ R+A+ + + LLNY++DGTPFWN +TP+ D G +I
Sbjct: 436 RVLQGPDTAEEDCERFREAIADEEPCSVELLNYRRDGTPFWNQSEITPVHGDDGSVTNYI 495
Query: 78 GMQVEVSK 85
G Q EV++
Sbjct: 496 GFQREVTE 503
>gi|239833953|ref|ZP_04682281.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG
3301]
gi|239822016|gb|EEQ93585.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG
3301]
Length = 495
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 44/67 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD VE IR A+ +S +LNYKK G PFWN L ++P+K ++G+ F+
Sbjct: 74 RFLQGPGTDPKHVEMIRAAIETEQSIDIDILNYKKSGEPFWNRLHISPVKTEAGELHHFV 133
Query: 78 GMQVEVS 84
Q++V+
Sbjct: 134 SSQLDVT 140
>gi|444310002|ref|ZP_21145630.1| signal transduction histidine kinase [Ochrobactrum intermedium M86]
gi|443486649|gb|ELT49423.1| signal transduction histidine kinase [Ochrobactrum intermedium M86]
Length = 491
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 44/67 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD VE IR A+ +S +LNYKK G PFWN L ++P+K ++G+ F+
Sbjct: 70 RFLQGPGTDPKHVEMIRAAIETEQSIDIDILNYKKSGEPFWNRLHISPVKTEAGELHHFV 129
Query: 78 GMQVEVS 84
Q++V+
Sbjct: 130 SSQLDVT 136
>gi|389691690|ref|ZP_10180484.1| PAS domain S-box [Microvirga sp. WSM3557]
gi|388588673|gb|EIM28963.1| PAS domain S-box [Microvirga sp. WSM3557]
Length = 896
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 43/71 (60%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQ P D N V +IR+A+ G++ LLN +KDGT FWN L +TPI D F+
Sbjct: 52 RFLQAPRVDDNTVTRIREAISAGRAISAELLNRRKDGTEFWNHLFITPISDGGSDPRFFL 111
Query: 78 GMQVEVSKYTE 88
QV+V++ E
Sbjct: 112 ATQVDVTQAYE 122
>gi|448473479|ref|ZP_21601621.1| PAS-PAC-PAC sensing histidine kinase [Halorubrum aidingense JCM
13560]
gi|445818991|gb|EMA68840.1| PAS-PAC-PAC sensing histidine kinase [Halorubrum aidingense JCM
13560]
Length = 981
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 44/67 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ETD V+++ DA+ G++ L NY+KDGT FWN L + P+ D +G+ +I
Sbjct: 189 RFLQGEETDPESVQRLHDAIDAGETVSVELRNYRKDGTEFWNHLEIAPVYDHTGELTHYI 248
Query: 78 GMQVEVS 84
G Q +V+
Sbjct: 249 GFQSDVT 255
>gi|428201366|ref|YP_007079955.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
[Pleurocapsa sp. PCC 7327]
gi|427978798|gb|AFY76398.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
[Pleurocapsa sp. PCC 7327]
Length = 965
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 40/129 (31%), Positives = 69/129 (53%), Gaps = 22/129 (17%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +T+ + V +IR A+ + L NY+KDG+PFWN LT++P++++ G+ FI
Sbjct: 612 RFLQGADTEPDAVAQIRRALHEQRECHVVLKNYRKDGSPFWNELTISPVQNEQGEVTHFI 671
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRSQSHIRALS 137
G+Q +++ S+ I R +A V QT + +++ I LS
Sbjct: 672 GLQTDIT----------------SRRQIASQVRAAAQA------VTQTTQDNETTINTLS 709
Query: 138 LDTTNKLEE 146
L+ ++E+
Sbjct: 710 LEAALQVEK 718
>gi|394988492|ref|ZP_10381327.1| hypothetical protein SCD_00892 [Sulfuricella denitrificans skB26]
gi|393791871|dbj|GAB70966.1| hypothetical protein SCD_00892 [Sulfuricella denitrificans skB26]
Length = 698
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 55/85 (64%), Gaps = 9/85 (10%)
Query: 8 ELIGC--CLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTP 65
E+IG CLL GP TD + ++IR A +NG + G +L+Y+KDG+ FWN LT++P
Sbjct: 312 EIIGSDYCLLV-----GPLTDPQQADRIRMAFKNGTEFSGDILHYRKDGSAFWNELTISP 366
Query: 66 IKDDSGKTIKFIGMQVEVS--KYTE 88
++++ G F+G+ +++ K+TE
Sbjct: 367 VRNEQGHLTHFVGITRDITERKHTE 391
>gi|452989720|gb|EME89475.1| K+-channel ERG [Pseudocercospora fijiensis CIRAD86]
Length = 601
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 45/67 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP + + V ++ A+ G+ C +LNYK+DGTPF NLL + P+ D+ G+ F+
Sbjct: 242 RFLQGPNSSTSAVRRLISALSRGEECCETILNYKRDGTPFMNLLMLAPLYDNKGEVRYFL 301
Query: 78 GMQVEVS 84
G Q++VS
Sbjct: 302 GAQIDVS 308
>gi|308067316|ref|YP_003868921.1| GAF domain containing protein [Paenibacillus polymyxa E681]
gi|305856595|gb|ADM68383.1| GAF domain containing protein [Paenibacillus polymyxa E681]
Length = 825
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 42/67 (62%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD + K+R +R LLNY+KDGT FWN L + P+ ++ G I F+
Sbjct: 248 RFLQGPGTDAAALAKVRRGIREQAMTRVELLNYRKDGTSFWNELLINPVDNEQGDVIHFV 307
Query: 78 GMQVEVS 84
G+Q ++S
Sbjct: 308 GIQNDIS 314
>gi|146282333|ref|YP_001172486.1| sensory box protein [Pseudomonas stutzeri A1501]
gi|386020611|ref|YP_005938635.1| sensory box protein [Pseudomonas stutzeri DSM 4166]
gi|145570538|gb|ABP79644.1| sensory box protein, putative [Pseudomonas stutzeri A1501]
gi|327480583|gb|AEA83893.1| sensory box protein, putative [Pseudomonas stutzeri DSM 4166]
Length = 146
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 49/73 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + D+ ++ IRDAV+N K + NY+KDGTPFWN L++TP+ +++ + FI
Sbjct: 54 RFLQGEDRDQPGLQAIRDAVKNNKPCRQIIRNYRKDGTPFWNELSITPVFNEADQLTYFI 113
Query: 78 GMQVEVSKYTEGV 90
G+Q V+ + +
Sbjct: 114 GIQKNVTAEVDAL 126
>gi|406858740|gb|EKD11832.1| white collar [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 808
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/75 (44%), Positives = 46/75 (61%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T+ V ++R+ V G +C LNY++DG+PF NLL P+ D G FI
Sbjct: 454 RFLQGPKTNPFSVRRLREKVDAGVEHCEVFLNYRRDGSPFMNLLMTAPLCDSRGTIRYFI 513
Query: 78 GMQVEVSKYTEGVND 92
G QV+VS + +D
Sbjct: 514 GAQVDVSGLVKECSD 528
>gi|94494912|ref|ZP_01301493.1| sensor histidine kinase [Sphingomonas sp. SKA58]
gi|94425178|gb|EAT10198.1| sensor histidine kinase [Sphingomonas sp. SKA58]
Length = 570
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 47/68 (69%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD+ V +R+AV++ ++ +LNYK+DGT FWN + + P+ DD G+ I F
Sbjct: 102 RFLQGADTDRGAVSDLREAVKHREAISLEILNYKRDGTAFWNAVFIAPVFDDHGELIYFF 161
Query: 78 GMQVEVSK 85
Q++V++
Sbjct: 162 ASQLDVTR 169
>gi|384251337|gb|EIE24815.1| hypothetical protein COCSUDRAFT_46955 [Coccomyxa subellipsoidea
C-169]
Length = 1327
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 47/68 (69%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD V +IR+A+ + +LNYKK+G FWNLL++ P+ + +G + FI
Sbjct: 423 RFLQGPDTDPASVVRIREALEQKREVSLEILNYKKNGDKFWNLLSMMPVCNAAGAVVSFI 482
Query: 78 GMQVEVSK 85
G+Q ++++
Sbjct: 483 GVQSDITE 490
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 11/96 (11%)
Query: 17 SRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN-----------LLTVTP 65
+RF+QGP++D V ++RDAVR G++ L+N +KDG+ FWN +++TP
Sbjct: 286 ARFMQGPDSDPEAVAELRDAVRTGRATVVELINLRKDGSRFWNQARPLLRFCPGFVSMTP 345
Query: 66 IKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLS 101
IKD SG F+G+ +V++ LR + LS
Sbjct: 346 IKDSSGFVTNFVGVLQDVTERKASEAAFKLRDHALS 381
>gi|453086050|gb|EMF14092.1| hypothetical protein SEPMUDRAFT_162303 [Mycosphaerella populorum
SO2202]
Length = 594
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 48/74 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T+ + V ++ A GK + L+NY++DGTPF NLL + P++D G F+
Sbjct: 282 RFLQGPKTNPHSVRRLAIACAEGKDHMELLVNYRRDGTPFLNLLMIAPLRDSKGIVRYFL 341
Query: 78 GMQVEVSKYTEGVN 91
G QV+VS + V+
Sbjct: 342 GAQVDVSGLLKDVS 355
>gi|452846862|gb|EME48794.1| hypothetical protein DOTSEDRAFT_40078 [Dothistroma septosporum
NZE10]
Length = 658
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 47/72 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T V ++ + + G+ C +LNY++DG+PF NLL + P+ D+ G F+
Sbjct: 317 RFLQGPQTSTAAVRRLIECLSRGEESCETILNYRRDGSPFMNLLMLAPMYDNKGTVRYFL 376
Query: 78 GMQVEVSKYTEG 89
G Q++VS+ +G
Sbjct: 377 GCQIDVSQLLQG 388
>gi|295691216|ref|YP_003594909.1| signal transduction histidine kinase [Caulobacter segnis ATCC
21756]
gi|295433119|gb|ADG12291.1| signal transduction histidine kinase [Caulobacter segnis ATCC
21756]
Length = 366
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 45/67 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQGPET + V+K+ A+ G+ LLNY+KDG+ FWN L V+P+++ G+ + F
Sbjct: 71 RMLQGPETSREAVQKLSAAIAAGEDVNVELLNYRKDGSTFWNALYVSPVRNTVGEIVYFF 130
Query: 78 GMQVEVS 84
G Q++V+
Sbjct: 131 GSQLDVT 137
>gi|193215252|ref|YP_001996451.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium
ATCC 35110]
gi|193088729|gb|ACF14004.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium
ATCC 35110]
Length = 1333
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 52/83 (62%), Gaps = 4/83 (4%)
Query: 5 TGKELIGCCLLC--SRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLT 62
TG E GC ++ RFL G + + ++EKIR A+R+GK L NYKKDG+ FWN LT
Sbjct: 554 TGYE--GCEIMGRNPRFLHGEDVSQPDLEKIRYAMRHGKPCTVLLKNYKKDGSLFWNELT 611
Query: 63 VTPIKDDSGKTIKFIGMQVEVSK 85
++PI D+ G F+G ++S+
Sbjct: 612 ISPISDNDGTVTHFVGTTNDISE 634
>gi|427732263|ref|YP_007078500.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
protein [Nostoc sp. PCC 7524]
gi|427368182|gb|AFY50903.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
protein [Nostoc sp. PCC 7524]
Length = 1019
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 49/73 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG D+ +E++R A++ + L NY+KDGTPFWN L + P+ DDSG+ FI
Sbjct: 251 RFLQGNAQDQLGIEELRKALQEQRECHVILKNYRKDGTPFWNELYIAPVFDDSGRLTNFI 310
Query: 78 GMQVEVSKYTEGV 90
G+Q +++++ + +
Sbjct: 311 GVQNDITQHLQAL 323
>gi|448460091|ref|ZP_21597011.1| HTR-like protein [Halorubrum lipolyticum DSM 21995]
gi|445807809|gb|EMA57890.1| HTR-like protein [Halorubrum lipolyticum DSM 21995]
Length = 620
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 46/71 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD V ++R+A+ + LLNY+KDGTPFWN ++V PI+ G +++
Sbjct: 307 RFLQGEDTDPEPVARLREAIDAEEPESVELLNYRKDGTPFWNRVSVAPIRAGDGSVSEWV 366
Query: 78 GMQVEVSKYTE 88
G Q +++ + E
Sbjct: 367 GFQEDITAFKE 377
>gi|322700020|gb|EFY91777.1| hypothetical protein MAC_02062 [Metarhizium acridum CQMa 102]
Length = 814
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/75 (45%), Positives = 45/75 (60%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP T+ V +IR+ + NG + LNY++DG+PF NL+ V P+ D G FI
Sbjct: 272 RFLQGPYTNPFSVTRIREKMENGIEHYETFLNYRRDGSPFMNLIMVAPLYDSRGVIRYFI 331
Query: 78 GMQVEVSKYTEGVND 92
G QV+VS G D
Sbjct: 332 GAQVDVSGLAMGCYD 346
>gi|421520772|ref|ZP_15967434.1| putative PAS/PAC sensor protein [Pseudomonas putida LS46]
gi|402755382|gb|EJX15854.1| putative PAS/PAC sensor protein [Pseudomonas putida LS46]
Length = 148
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 55/87 (63%), Gaps = 5/87 (5%)
Query: 3 DPTGKELIGCC---LLCS--RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPF 57
+P + L G C +L RFLQG + D+ + IR+A+R G+ C L NY+KDG+ F
Sbjct: 34 NPAFERLTGYCADDILYQDCRFLQGEDHDQPGIATIREAIREGRPCCQVLRNYRKDGSLF 93
Query: 58 WNLLTVTPIKDDSGKTIKFIGMQVEVS 84
WN L++TP+ +++ + +IG+Q +V+
Sbjct: 94 WNELSITPVHNEADQLTYYIGIQRDVT 120
>gi|448582301|ref|ZP_21645805.1| PAS-PAC-PAC sensing histidine kinase [Haloferax gibbonsii ATCC
33959]
gi|445731949|gb|ELZ83532.1| PAS-PAC-PAC sensing histidine kinase [Haloferax gibbonsii ATCC
33959]
Length = 870
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ETD VE + +A+ G+S L NY+KDGTPFWN L ++P+ +D G+ F+
Sbjct: 204 RFLQGEETDTEPVELLHEAIEAGESVAVSLTNYRKDGTPFWNELKISPVYED-GELTHFV 262
Query: 78 GMQVEVS 84
G Q + +
Sbjct: 263 GFQTDAT 269
>gi|429330861|ref|ZP_19211639.1| histidine kinase [Pseudomonas putida CSV86]
gi|428764447|gb|EKX86584.1| histidine kinase [Pseudomonas putida CSV86]
Length = 532
Score = 70.5 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 43/147 (29%), Positives = 77/147 (52%), Gaps = 20/147 (13%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD V IR A+ + +LNY+KDG+ FWN L ++PI ++ G+ + F
Sbjct: 71 RFLQGPDTDPEVVGAIRGAIEGRYDFSTEILNYRKDGSSFWNALFISPIFNEKGELVYFF 130
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSL------IRYDARQKEKALGSITEVIQT------ 125
Q++VS+ + + AL + ++L I +D + +G ++I+T
Sbjct: 131 ASQLDVSRRRDA--EDALHQSQKMEALGQLTGGIAHDFNNLLQVMGGYIDLIRTAAEKPA 188
Query: 126 -----VKRSQSHIRALSLDTTNKLEEK 147
++RS H R+ ++D + L ++
Sbjct: 189 PDMERIRRSTFHARS-AVDKASTLTKQ 214
>gi|163849319|ref|YP_001637363.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
gi|163670608|gb|ABY36974.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
Length = 1209
Score = 70.5 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 45/70 (64%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78
FLQGPETD V +IR A+ NG+S ++NY K G P+W L ++P+ DD I+FI
Sbjct: 255 FLQGPETDPATVARIRQALDNGESVKAEIVNYTKQGRPYWLALNISPVYDDQHNLIRFIA 314
Query: 79 MQVEVSKYTE 88
++ ++++ E
Sbjct: 315 IESDITQQKE 324
>gi|170750900|ref|YP_001757160.1| putative PAS/PAC sensor protein [Methylobacterium radiotolerans JCM
2831]
gi|170657422|gb|ACB26477.1| putative PAS/PAC sensor protein [Methylobacterium radiotolerans JCM
2831]
Length = 164
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T+ V+++R A+R + LLNY+KDG+ F N L V P++D++G+ + F
Sbjct: 72 RFLQGPDTEAAAVDRLRAAIRREEDIRVDLLNYRKDGSTFQNALYVGPVRDEAGRVVYFF 131
Query: 78 GMQVEVSKY 86
Q++VS++
Sbjct: 132 ASQLDVSEH 140
>gi|224110804|ref|XP_002315641.1| predicted protein [Populus trichocarpa]
gi|222864681|gb|EEF01812.1| predicted protein [Populus trichocarpa]
Length = 396
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI-KDDSGKTIKF 76
R QGP+T++ V +IR+A+R ++ L NY+KDGTPFW L ++P+ + G+ I F
Sbjct: 67 RMFQGPKTNRKTVMEIREAIREERAVQVSLWNYRKDGTPFWMLFQMSPVFSKEDGRVIHF 126
Query: 77 IGMQVEVSKYTEGVNDKA 94
IG+QV + + +D A
Sbjct: 127 IGVQVPILRNKRSTDDGA 144
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 50/75 (66%), Gaps = 3/75 (4%)
Query: 8 ELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIK 67
E++GC RFL G TD + + +I+++++ ++ LNY+KD + FWNLL ++P++
Sbjct: 278 EVLGCNW---RFLSGVGTDSSVLNQIQESMQVEQACTVCFLNYRKDKSTFWNLLHMSPVR 334
Query: 68 DDSGKTIKFIGMQVE 82
+ +GK F+G+Q+E
Sbjct: 335 NATGKIAYFVGVQME 349
>gi|222527313|ref|YP_002571784.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
gi|222451192|gb|ACM55458.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
Length = 1209
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 45/70 (64%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78
FLQGPETD V +IR A+ NG+S ++NY K G P+W L ++P+ DD I+FI
Sbjct: 255 FLQGPETDPATVARIRQALDNGESVKAEIVNYTKQGRPYWLALNISPVYDDQHNLIRFIA 314
Query: 79 MQVEVSKYTE 88
++ ++++ E
Sbjct: 315 IESDITQQKE 324
>gi|409406269|ref|ZP_11254731.1| PAS/PAC sensor hybrid histidine kinase [Herbaspirillum sp. GW103]
gi|386434818|gb|EIJ47643.1| PAS/PAC sensor hybrid histidine kinase [Herbaspirillum sp. GW103]
Length = 546
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 45/68 (66%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD++ V ++R AV + LLNY+K+G+ FWN L ++P+ D G+ F
Sbjct: 86 RFLQGPETDRSVVAQVRQAVAERREMATELLNYRKNGSTFWNALFISPVYDQRGELKYFF 145
Query: 78 GMQVEVSK 85
Q+++S+
Sbjct: 146 SSQLDISR 153
>gi|393767962|ref|ZP_10356505.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. GXF4]
gi|392726568|gb|EIZ83890.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. GXF4]
Length = 807
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/69 (44%), Positives = 46/69 (66%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD ++V K+RDA+ + +LNY +DGTPF N L V+P+ D SG+ F
Sbjct: 94 RFLQGPGTDPSDVAKVRDAIAARRDVVVEILNYHRDGTPFRNELYVSPVFDPSGQLRYFF 153
Query: 78 GMQVEVSKY 86
Q++V+++
Sbjct: 154 ASQLDVTRF 162
>gi|380482256|emb|CCF41349.1| hypothetical protein CH063_11658, partial [Colletotrichum
higginsianum]
Length = 640
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/67 (47%), Positives = 44/67 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T+ V+++R+ GK + LNY++DG+PF NLL V P+ D G FI
Sbjct: 257 RFLQGPKTNPYSVKRLRERCLAGKEHYETFLNYRRDGSPFMNLLMVAPLYDSRGTVRYFI 316
Query: 78 GMQVEVS 84
G QV+VS
Sbjct: 317 GAQVDVS 323
>gi|433774135|ref|YP_007304602.1| PAS domain S-box [Mesorhizobium australicum WSM2073]
gi|433666150|gb|AGB45226.1| PAS domain S-box [Mesorhizobium australicum WSM2073]
Length = 367
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG T V +IR A+ + +LN++KDG+PFWN L ++PIKDD G + +
Sbjct: 93 RFLQGEGTSPTAVAEIRAAIERQREANVEILNFRKDGSPFWNQLHLSPIKDDEGGLLYYF 152
Query: 78 GMQVEVSKY 86
Q++V+K+
Sbjct: 153 ASQIDVTKH 161
>gi|422418297|ref|ZP_16495252.1| blue-light photoreceptor [Listeria seeligeri FSL N1-067]
gi|313634231|gb|EFS00866.1| blue-light photoreceptor [Listeria seeligeri FSL N1-067]
Length = 266
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
FLQG +TD+ EV+K+RDAV N + L NY+KDG+ F N LT+ PI DD+G + F+
Sbjct: 70 HFLQGEDTDQEEVKKVRDAVNNKTTTTALLKNYRKDGSSFMNELTIEPIYDDNGH-LYFV 128
Query: 78 GMQVEVS 84
G+Q +++
Sbjct: 129 GIQKDIT 135
>gi|168702420|ref|ZP_02734697.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
2246]
Length = 1013
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 45/67 (67%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78
LQG +T V ++R AVR G LLNYKKDG+PFW+ L+++P++D +G+ FIG
Sbjct: 553 LLQGRDTSAEAVAQVRAAVRAGVPCAVELLNYKKDGSPFWSELSISPVRDATGRLTHFIG 612
Query: 79 MQVEVSK 85
+ +V++
Sbjct: 613 VHTDVTR 619
>gi|298707248|emb|CBJ25875.1| aureochrome 1 [Ectocarpus siliculosus]
Length = 621
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ETD V+KIR A+ G LLNY+ DGT FWN V ++D G T+ ++
Sbjct: 485 RFLQGAETDPKAVDKIRKAIDEGYDTSVCLLNYRADGTTFWNQFFVASLRDGKGNTVNYV 544
Query: 78 GMQVEV-SKYTE-GVNDKALRPNGLSKSLIR 106
G+Q +V Y + VN++ + G SK+ R
Sbjct: 545 GVQCKVGDDYAKIVVNEQNRQLAGPSKTRTR 575
>gi|359785259|ref|ZP_09288412.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Halomonas sp. GFAJ-1]
gi|359297374|gb|EHK61609.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Halomonas sp. GFAJ-1]
Length = 874
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 45/68 (66%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP++D V ++R ++ + + NY++DGTPFWN L + P++D G+ F+
Sbjct: 363 RFLQGPDSDPEVVAQLRRGIKERREVHVTICNYRQDGTPFWNDLYIAPVRDQEGQVTHFV 422
Query: 78 GMQVEVSK 85
G+Q ++S+
Sbjct: 423 GIQHDISQ 430
>gi|433422511|ref|ZP_20406014.1| PAS-PAC-PAC sensing histidine kinase [Haloferax sp. BAB2207]
gi|432198601|gb|ELK54866.1| PAS-PAC-PAC sensing histidine kinase [Haloferax sp. BAB2207]
Length = 709
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/67 (47%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD VE + +AV G+S L NY+KDGTPFWN L ++P+ DD G+ F+
Sbjct: 43 RFLQGDDTDPEAVETLHEAVDAGESAAVGLTNYRKDGTPFWNDLKISPVYDD-GELTHFV 101
Query: 78 GMQVEVS 84
G Q + +
Sbjct: 102 GFQTDAT 108
>gi|415921429|ref|ZP_11554531.1| Sensor protein [Herbaspirillum frisingense GSF30]
gi|407760818|gb|EKF70018.1| Sensor protein [Herbaspirillum frisingense GSF30]
Length = 537
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 45/68 (66%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD+ V ++R+AV + LLNY+K+G+ FWN L ++P+ D G+ F
Sbjct: 77 RFLQGPETDRAVVAQVREAVLERREIATELLNYRKNGSTFWNALFISPVYDQHGELKYFF 136
Query: 78 GMQVEVSK 85
Q+++S+
Sbjct: 137 SSQLDISR 144
>gi|429191743|ref|YP_007177421.1| PAS domain-containing protein [Natronobacterium gregoryi SP2]
gi|448325113|ref|ZP_21514511.1| PAS/PAC sensor protein [Natronobacterium gregoryi SP2]
gi|429135961|gb|AFZ72972.1| PAS domain S-box [Natronobacterium gregoryi SP2]
gi|445616252|gb|ELY69880.1| PAS/PAC sensor protein [Natronobacterium gregoryi SP2]
Length = 1517
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 45/71 (63%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ETD V ++R+A+ + L NY+KDG+ FWN ++V PI+DD G + F+
Sbjct: 347 RFLQGRETDSEAVRELREAIAAAEPTTVELRNYRKDGSEFWNRVSVAPIEDDQGAVVNFV 406
Query: 78 GMQVEVSKYTE 88
Q +V++ E
Sbjct: 407 EFQEDVTERKE 417
>gi|256821584|ref|YP_003145547.1| PAS/PAC and GAF sensor-containing diguanylate
cyclase/phosphodiesterase [Kangiella koreensis DSM
16069]
gi|256795123|gb|ACV25779.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Kangiella koreensis DSM 16069]
Length = 887
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQGP+TD+ + I +A+ + NYKKDGTPFWN L ++P+KDD+ FI
Sbjct: 387 RILQGPDTDQKVRQAIHNALEQQTEISTIIKNYKKDGTPFWNELLISPVKDDNDNVTHFI 446
Query: 78 GMQVEVSK 85
G+Q ++++
Sbjct: 447 GLQNDITE 454
>gi|448597109|ref|ZP_21654247.1| PAS-PAC-PAC sensing histidine kinase [Haloferax alexandrinus JCM
10717]
gi|445740990|gb|ELZ92495.1| PAS-PAC-PAC sensing histidine kinase [Haloferax alexandrinus JCM
10717]
Length = 858
Score = 69.7 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/67 (47%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD VE + +AV G+S L NY+KDGTPFWN L ++P+ DD G+ F+
Sbjct: 192 RFLQGDDTDPEAVETLHEAVDAGESAAVGLTNYRKDGTPFWNDLKISPVYDD-GELTHFV 250
Query: 78 GMQVEVS 84
G Q + +
Sbjct: 251 GFQTDAT 257
>gi|448572980|ref|ZP_21640658.1| PAS-PAC-PAC sensing histidine kinase [Haloferax lucentense DSM
14919]
gi|445719345|gb|ELZ71026.1| PAS-PAC-PAC sensing histidine kinase [Haloferax lucentense DSM
14919]
Length = 858
Score = 69.7 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/67 (47%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD VE + +AV G+S L NY+KDGTPFWN L ++P+ DD G+ F+
Sbjct: 192 RFLQGDDTDPEAVETLHEAVDAGESAAVGLTNYRKDGTPFWNDLKISPVYDD-GELTHFV 250
Query: 78 GMQVEVS 84
G Q + +
Sbjct: 251 GFQTDAT 257
>gi|292654797|ref|YP_003534694.1| PAS-PAC-PAC sensing histidine kinase [Haloferax volcanii DS2]
gi|448293062|ref|ZP_21483306.1| PAS-PAC-PAC sensing histidine kinase [Haloferax volcanii DS2]
gi|291370941|gb|ADE03168.1| pas-pac-pac sensing his kinase [Haloferax volcanii DS2]
gi|445571562|gb|ELY26109.1| PAS-PAC-PAC sensing histidine kinase [Haloferax volcanii DS2]
Length = 858
Score = 69.7 bits (169), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/67 (47%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD VE + +AV G+S L NY+KDGTPFWN L ++P+ DD G+ F+
Sbjct: 192 RFLQGDDTDPEAVETLHEAVDAGESAAVGLTNYRKDGTPFWNDLKISPVYDD-GELTHFV 250
Query: 78 GMQVEVS 84
G Q + +
Sbjct: 251 GFQTDAT 257
>gi|448543401|ref|ZP_21624966.1| PAS-PAC-PAC sensing histidine kinase [Haloferax sp. ATCC BAA-646]
gi|448550427|ref|ZP_21628806.1| PAS-PAC-PAC sensing histidine kinase [Haloferax sp. ATCC BAA-645]
gi|448559347|ref|ZP_21633518.1| PAS-PAC-PAC sensing histidine kinase [Haloferax sp. ATCC BAA-644]
gi|445706538|gb|ELZ58416.1| PAS-PAC-PAC sensing histidine kinase [Haloferax sp. ATCC BAA-646]
gi|445711358|gb|ELZ63151.1| PAS-PAC-PAC sensing histidine kinase [Haloferax sp. ATCC BAA-644]
gi|445711428|gb|ELZ63220.1| PAS-PAC-PAC sensing histidine kinase [Haloferax sp. ATCC BAA-645]
Length = 858
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/67 (47%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD VE + +AV G+S L NY+KDGTPFWN L ++P+ DD G+ F+
Sbjct: 192 RFLQGDDTDPEAVETLHEAVDAGESAAVGLTNYRKDGTPFWNDLKISPVYDD-GELTHFV 250
Query: 78 GMQVEVS 84
G Q + +
Sbjct: 251 GFQTDAT 257
>gi|417305855|ref|ZP_12092797.1| signal transduction histidine kinase with CheB and CheR activity
[Rhodopirellula baltica WH47]
gi|327537864|gb|EGF24566.1| signal transduction histidine kinase with CheB and CheR activity
[Rhodopirellula baltica WH47]
Length = 1637
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 13/105 (12%)
Query: 1 MSDPTG---KELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTP 56
+D TG +E+IG C RFLQG TD V +IR A+ G+S + NY+K+G P
Sbjct: 1019 FTDMTGFSEQEIIGRNC----RFLQGEHTDNETVLRIRRALGRGESVRELIKNYRKNGEP 1074
Query: 57 FWNLLTVTPIKDDSGKTIKFIGMQVEVSKYTEGV-----NDKALR 96
FWN L +TP+ D++G F+G+Q +V++ E N++ +R
Sbjct: 1075 FWNDLYITPVHDENGILTHFVGVQNDVTERIEAARQTETNERTIR 1119
>gi|449434827|ref|XP_004135197.1| PREDICTED: protein TWIN LOV 1-like [Cucumis sativus]
Length = 385
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ T +E+IG + QGPET ++ V IR+AVR K LLNY+KDGTPFW
Sbjct: 53 MTGYTKEEVIG---KNGKMFQGPETSRSSVMLIREAVREEKEIQINLLNYRKDGTPFWVF 109
Query: 61 LTVTPI-KDDSGKTIKFIGMQVEVSK 85
+TP+ + G+ I F+G+QV + K
Sbjct: 110 FQMTPVFSKEDGQIIHFVGVQVPILK 135
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 23/121 (19%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFL G +TD + + KI++++++ ++ R+LNY+K+ + FWN L V+P+ + SGK F+
Sbjct: 281 RFLSGIDTDSSTLFKIKESLQSEQACTVRILNYRKNKSSFWNDLHVSPVHNASGKLAYFV 340
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRSQSHIRALS 137
G+Q++ D +Q E L T+ + TV + +R+LS
Sbjct: 341 GVQMDAD-----------------------DKKQDEHGLNPKTKQLSTVGAVKVAVRSLS 377
Query: 138 L 138
+
Sbjct: 378 M 378
>gi|427730175|ref|YP_007076412.1| PAS domain-containing protein [Nostoc sp. PCC 7524]
gi|427366094|gb|AFY48815.1| PAS domain S-box [Nostoc sp. PCC 7524]
Length = 1712
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 59/92 (64%), Gaps = 3/92 (3%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQ +TD+ ++K+R A+++GK L NY+KDG+ FWN L+++PI D++G F+
Sbjct: 491 RFLQSTDTDQPALQKLRLALKSGKDCQLILRNYRKDGSLFWNELSISPIYDETGTLTHFL 550
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDA 109
G+Q +VS + ALR L+ + I YDA
Sbjct: 551 GIQSDVSDRQTA--EMALRRQALTFANI-YDA 579
>gi|337278915|ref|YP_004618386.1| hybrid histidine kinase [Ramlibacter tataouinensis TTB310]
gi|334729991|gb|AEG92367.1| candidate histidine kinase, hybrid [Ramlibacter tataouinensis
TTB310]
Length = 537
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 14/103 (13%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQGPETD V +IR A+ ++ +LNYK DGTPFWN L + PI D G+ I +
Sbjct: 80 RILQGPETDSETVAEIRTALAEQRAVAVDILNYKADGTPFWNALFIGPIFDSRGRLIHWS 139
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
Q+++++ +++++LR QK +A+G +T
Sbjct: 140 SSQMDITR--RRMSEQSLR------------QAQKMEAIGQLT 168
>gi|409991350|ref|ZP_11274619.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira
platensis str. Paraca]
gi|409937785|gb|EKN79180.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira
platensis str. Paraca]
Length = 709
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 45/66 (68%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78
FLQGP +D +++IR ++ K Y G LLNYK++GTP+W +++TPI + G KFI
Sbjct: 210 FLQGPLSDAETIDQIRTCLKEHKPYRGELLNYKRNGTPYWLSISITPIFNHQGDLTKFIA 269
Query: 79 MQVEVS 84
++ ++S
Sbjct: 270 IETDIS 275
>gi|291566274|dbj|BAI88546.1| two-component sensor histidine kinase [Arthrospira platensis
NIES-39]
Length = 709
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 45/66 (68%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78
FLQGP +D +++IR ++ K Y G LLNYK++GTP+W +++TPI + G KFI
Sbjct: 210 FLQGPLSDAETIDQIRTCLKEHKPYRGELLNYKRNGTPYWLSISITPIFNHQGDLTKFIA 269
Query: 79 MQVEVS 84
++ ++S
Sbjct: 270 IETDIS 275
>gi|449530273|ref|XP_004172120.1| PREDICTED: protein TWIN LOV 1-like [Cucumis sativus]
Length = 382
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ T +E+IG + QGPET ++ V IR+AVR K LLNY+KDGTPFW
Sbjct: 53 MTGYTKEEVIG---KNGKMFQGPETSRSSVMLIREAVREEKEIQINLLNYRKDGTPFWVF 109
Query: 61 LTVTPI-KDDSGKTIKFIGMQVEVSK 85
+TP+ + G+ I F+G+QV + K
Sbjct: 110 FQMTPVFSKEDGQIIHFVGVQVPILK 135
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 23/121 (19%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFL G +TD + + KI++++++ ++ R+LNY+K+ + FWN L V+P+ + SGK F+
Sbjct: 278 RFLSGIDTDSSTLFKIKESLQSEQACTVRILNYRKNKSSFWNDLHVSPVHNASGKLAYFV 337
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRSQSHIRALS 137
G+Q++ D +Q E L T+ + TV + +R+LS
Sbjct: 338 GVQMDAD-----------------------DKKQDEHGLNPKTKQLSTVGAVKVAVRSLS 374
Query: 138 L 138
+
Sbjct: 375 M 375
>gi|374311707|ref|YP_005058137.1| PAS/PAC sensor signal transduction histidine kinase [Granulicella
mallensis MP5ACTX8]
gi|358753717|gb|AEU37107.1| PAS/PAC sensor signal transduction histidine kinase [Granulicella
mallensis MP5ACTX8]
Length = 519
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 47/68 (69%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFL+G E + + +RDA+ N + L N++KDGTPFWN L+++PI DD+G+ ++
Sbjct: 200 RFLEGNERSQPGLAIVRDALSNRRKGVAILKNFRKDGTPFWNELSLSPISDDNGQLTHYV 259
Query: 78 GMQVEVSK 85
G+Q +V+K
Sbjct: 260 GIQTDVTK 267
>gi|426409877|ref|YP_007029976.1| putative PAS/PAC sensor protein [Pseudomonas sp. UW4]
gi|426268094|gb|AFY20171.1| putative PAS/PAC sensor protein [Pseudomonas sp. UW4]
Length = 148
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 46/67 (68%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQ + D+ +E IR A+R G+ L NY+KDG+PFWN L++TP+ +D+ + +I
Sbjct: 54 RFLQADDHDQTGLEAIRSAIRLGQPCRQVLRNYRKDGSPFWNELSITPVYNDADQLTYYI 113
Query: 78 GMQVEVS 84
G+Q +VS
Sbjct: 114 GIQHDVS 120
>gi|407920808|gb|EKG13988.1| PAS domain-containing protein [Macrophomina phaseolina MS6]
Length = 582
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 45/67 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP T+K +E++ A++ GK L NY++DG+ F NLL + P+ D+ GK FI
Sbjct: 409 RFLQGPRTNKASIERLSQAIQEGKETNELLCNYRRDGSVFINLLMMAPLMDNKGKVRYFI 468
Query: 78 GMQVEVS 84
G Q++VS
Sbjct: 469 GSQIDVS 475
>gi|26989458|ref|NP_744883.1| sensory box protein [Pseudomonas putida KT2440]
gi|24984326|gb|AAN68347.1|AE016468_1 sensory box protein, putative [Pseudomonas putida KT2440]
Length = 151
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 55/87 (63%), Gaps = 5/87 (5%)
Query: 3 DPTGKELIGCC---LLCS--RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPF 57
+P + L G C +L RFLQG + D+ + IR+A+R G+ C L NY+KDG+ F
Sbjct: 37 NPAFERLTGYCADDILYQDCRFLQGEDHDQPGIAIIREAIREGRPCCQVLRNYRKDGSLF 96
Query: 58 WNLLTVTPIKDDSGKTIKFIGMQVEVS 84
WN L++TP+ +++ + +IG+Q +V+
Sbjct: 97 WNELSITPVHNEADQLTYYIGIQRDVT 123
>gi|358056330|dbj|GAA97697.1| hypothetical protein E5Q_04375 [Mixia osmundae IAM 14324]
Length = 670
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 34/81 (41%), Positives = 48/81 (59%)
Query: 3 DPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLT 62
D TG C RFLQGP + + V +IRDA+ G+ +LNY++ G PF+ LLT
Sbjct: 337 DLTGYTREEICGRNCRFLQGPSSSQESVGRIRDALNRGEGCSELILNYRRSGQPFYCLLT 396
Query: 63 VTPIKDDSGKTIKFIGMQVEV 83
+ P+K SG + F+G QV+V
Sbjct: 397 IMPLKSKSGDIVYFLGGQVDV 417
>gi|358056329|dbj|GAA97696.1| hypothetical protein E5Q_04374 [Mixia osmundae IAM 14324]
Length = 669
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 34/81 (41%), Positives = 48/81 (59%)
Query: 3 DPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLT 62
D TG C RFLQGP + + V +IRDA+ G+ +LNY++ G PF+ LLT
Sbjct: 336 DLTGYTREEICGRNCRFLQGPSSSQESVGRIRDALNRGEGCSELILNYRRSGQPFYCLLT 395
Query: 63 VTPIKDDSGKTIKFIGMQVEV 83
+ P+K SG + F+G QV+V
Sbjct: 396 IMPLKSKSGDIVYFLGGQVDV 416
>gi|148548224|ref|YP_001268326.1| putative PAS/PAC sensor protein [Pseudomonas putida F1]
gi|395448937|ref|YP_006389190.1| putative PAS/PAC sensor protein [Pseudomonas putida ND6]
gi|397695489|ref|YP_006533372.1| PAS/PAC sensor protein [Pseudomonas putida DOT-T1E]
gi|148512282|gb|ABQ79142.1| putative PAS/PAC sensor protein [Pseudomonas putida F1]
gi|203368551|gb|ACH98465.1| putative PAS/PAC sensor protein [Pseudomonas putida DOT-T1E]
gi|388562934|gb|AFK72075.1| putative PAS/PAC sensor protein [Pseudomonas putida ND6]
gi|397332219|gb|AFO48578.1| putative PAS/PAC sensor protein [Pseudomonas putida DOT-T1E]
Length = 148
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 55/87 (63%), Gaps = 5/87 (5%)
Query: 3 DPTGKELIGCC---LLCS--RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPF 57
+P + L G C +L RFLQG + D+ + IR+A+R G+ C L NY+KDG+ F
Sbjct: 34 NPAFERLTGYCADDILYQDCRFLQGEDHDQPGIAIIREAIREGRPCCQVLRNYRKDGSLF 93
Query: 58 WNLLTVTPIKDDSGKTIKFIGMQVEVS 84
WN L++TP+ +++ + +IG+Q +V+
Sbjct: 94 WNELSITPVHNEADQLTYYIGIQRDVT 120
>gi|440718889|ref|ZP_20899327.1| signal transduction histidine kinase with CheB and CheR activity
[Rhodopirellula baltica SWK14]
gi|436435877|gb|ELP29686.1| signal transduction histidine kinase with CheB and CheR activity
[Rhodopirellula baltica SWK14]
Length = 1739
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 45/72 (62%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD + V+ IRDA++ K LLNY++DG+ F N L +TPI+D G F+
Sbjct: 1029 RFLQGPLTDPSNVDMIRDAIKKKKECRVTLLNYRRDGSQFHNDLIITPIQDSQGVVTHFV 1088
Query: 78 GMQVEVSKYTEG 89
G+Q + + E
Sbjct: 1089 GVQNDATDIVEA 1100
>gi|386012475|ref|YP_005930752.1| Putative PAS/PAC sensor protein [Pseudomonas putida BIRD-1]
gi|313499181|gb|ADR60547.1| Putative PAS/PAC sensor protein [Pseudomonas putida BIRD-1]
Length = 148
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 55/87 (63%), Gaps = 5/87 (5%)
Query: 3 DPTGKELIGCC---LLCS--RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPF 57
+P + L G C +L RFLQG + D+ + IR+A+R G+ C L NY+KDG+ F
Sbjct: 34 NPAFERLTGYCADDILYQDCRFLQGEDHDQPGIAIIREAIREGRPCCQVLRNYRKDGSLF 93
Query: 58 WNLLTVTPIKDDSGKTIKFIGMQVEVS 84
WN L++TP+ +++ + +IG+Q +V+
Sbjct: 94 WNELSITPVHNEADQLTYYIGIQRDVT 120
>gi|222106570|ref|YP_002547361.1| sensory box histidine kinase [Agrobacterium vitis S4]
gi|221737749|gb|ACM38645.1| sensory box histidine kinase [Agrobacterium vitis S4]
Length = 411
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP++D V +IR A+ + +LNY+KDGT FWN L ++P++D G+ I F
Sbjct: 117 RFLQGPDSDPKAVLQIRKAIEAERDVSVNILNYRKDGTTFWNALFISPVRDIQGEVIYFF 176
Query: 78 GMQVEVS 84
Q++ +
Sbjct: 177 ASQLDFT 183
>gi|170747057|ref|YP_001753317.1| signal transduction histidine kinase [Methylobacterium
radiotolerans JCM 2831]
gi|170653579|gb|ACB22634.1| signal transduction histidine kinase [Methylobacterium
radiotolerans JCM 2831]
Length = 334
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 7/82 (8%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQGP TD++ V++IR AV + LLNY+KDG+ FWN +T+TP++D G F
Sbjct: 37 RMLQGPATDRSTVQRIRSAVEAAEPISVELLNYRKDGSSFWNAMTITPVRDAEGLAY-FY 95
Query: 78 GMQVEVSKYTE------GVNDK 93
Q +++ + G ND+
Sbjct: 96 AAQADMTHVHQMEVAMRGTNDE 117
>gi|449298363|gb|EMC94378.1| hypothetical protein BAUCODRAFT_25581 [Baudoinia compniacensis UAMH
10762]
Length = 1049
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 42/67 (62%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP T+ N V ++ +A GK +NY++DG+PF NLL + P+ D G FI
Sbjct: 612 RFLQGPRTNPNSVRRLAEACVAGKELTEVFVNYRRDGSPFMNLLMIAPLMDSRGSIRYFI 671
Query: 78 GMQVEVS 84
G QV+VS
Sbjct: 672 GAQVDVS 678
>gi|148252462|ref|YP_001237047.1| histidine kinase [Bradyrhizobium sp. BTAi1]
gi|146404635|gb|ABQ33141.1| putative sensor histidine kinase with PAS/PAC and Response
regulator receiver domains [Bradyrhizobium sp. BTAi1]
Length = 534
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 41/143 (28%), Positives = 72/143 (50%), Gaps = 12/143 (8%)
Query: 5 TGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVT 64
TG EL RFLQGP+TD+ + IR A+ + + +LNY+K+G FWN L ++
Sbjct: 63 TGYELNEIVGTNCRFLQGPDTDQETIAAIRSAIASRRDIAVEILNYRKNGAAFWNALFIS 122
Query: 65 PIKDDSGKTIKFIGMQVEVSKYTEG----VNDKALRPNGLSKSLIRYDARQ--------K 112
P+ + +G+ + F G Q++VS+ + V + + G I +D
Sbjct: 123 PVYNRAGELVYFFGSQLDVSRRRDAESALVQSQKMEAIGQLTGGIAHDFNNILQVIIGYT 182
Query: 113 EKALGSITEVIQTVKRSQSHIRA 135
E G+++E+ +R+ +IR+
Sbjct: 183 ETLQGAVSELAPRHRRAVENIRS 205
>gi|92114742|ref|YP_574670.1| putative PAS/PAC sensor protein [Chromohalobacter salexigens DSM
3043]
gi|91797832|gb|ABE59971.1| putative PAS/PAC sensor protein [Chromohalobacter salexigens DSM
3043]
Length = 144
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 52/75 (69%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + D+ ++++IR ++R G+ L NY+KDG+ FWN L++TP+ DD + F+
Sbjct: 59 RFLQGDDRDQPQLDEIRRSIRQGEPCREVLRNYRKDGSMFWNELSITPVYDDEDQLTYFV 118
Query: 78 GMQVEVSKYTEGVND 92
G+Q +V++ E +++
Sbjct: 119 GVQKDVTELVEAMHE 133
>gi|428312493|ref|YP_007123470.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
gi|428254105|gb|AFZ20064.1| PAS domain S-box [Microcoleus sp. PCC 7113]
Length = 662
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 44/148 (29%), Positives = 75/148 (50%), Gaps = 13/148 (8%)
Query: 5 TGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVT 64
TG +L R LQGP+TD+++++KIR A++ K LLNY+KDG+ FW L +
Sbjct: 457 TGYDLTEVLGRTPRLLQGPKTDRSQLDKIRTALQEQKPVQVELLNYRKDGSEFWVELNIV 516
Query: 65 PIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQ 124
PI GK ++ +Q E+++ + +++ + +Q K L SIT+
Sbjct: 517 PIASKEGKVTHWVALQREITERKQ------------AEAALVASKQQISKILESITDGFF 564
Query: 125 TVKRSQSHIRALSLDTTNKLEEKRSSIL 152
TV Q H ++ L++ R+ +L
Sbjct: 565 TVDE-QWHFTYVNQKAEQILQKNRAELL 591
>gi|404403342|ref|ZP_10994926.1| histidine kinase [Pseudomonas fuscovaginae UPB0736]
Length = 519
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 47/68 (69%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETDK +++++ AV + C +LNY+KDG+ FWN L + P+ ++ G+ + F
Sbjct: 65 RFLQGPETDKRVLQQVQLAVLHHHEVCVEVLNYRKDGSAFWNELFIFPLFNERGQLVYFF 124
Query: 78 GMQVEVSK 85
Q++VS+
Sbjct: 125 ASQLDVSR 132
>gi|456352370|dbj|BAM86815.1| putative sensor histidine kinase with PAS/PAC and response
regulator receiver domains [Agromonas oligotrophica S58]
Length = 534
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 14/103 (13%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD+ V IR A+ N + +LNY+K+G FWN L ++P+ + G+ + F
Sbjct: 76 RFLQGPDTDRETVAAIRSAIANRQDVAVEILNYRKNGAAFWNALFISPVYNRDGELVYFF 135
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
Q++VS+ + +LI+ QK +A+G +T
Sbjct: 136 ASQLDVSRRRDA-----------ESALIQ---SQKMEAIGQLT 164
>gi|443476320|ref|ZP_21066232.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC
7429]
gi|443018713|gb|ELS32917.1| multi-sensor hybrid histidine kinase [Pseudanabaena biceps PCC
7429]
Length = 1179
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 7/94 (7%)
Query: 1 MSDPTGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFW 58
+S T E++G C RFLQG + + E E +R+AV+ GK+ + NY+KDG+ FW
Sbjct: 318 ISGYTAGEIMGKNC-----RFLQGSDLFQQEKEILRNAVKQGKACRVVIRNYRKDGSLFW 372
Query: 59 NLLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVND 92
N L ++PI D+ GK FIG+Q +++ E D
Sbjct: 373 NELNISPIFDNMGKVTHFIGIQSDITDRKEAEKD 406
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 30/48 (62%)
Query: 37 VRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGMQVEVS 84
+ NGK + G + N KDGT +W T+ P+ ++ G ++++ ++ ++S
Sbjct: 226 ITNGKVWRGEICNRAKDGTYYWTDSTIVPLLNERGLPMQYLAIRFDIS 273
>gi|448495827|ref|ZP_21610218.1| signal-transducing histidine kinase/response regulator [Halorubrum
californiensis DSM 19288]
gi|445687586|gb|ELZ39867.1| signal-transducing histidine kinase/response regulator [Halorubrum
californiensis DSM 19288]
Length = 683
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 37/101 (36%), Positives = 61/101 (60%), Gaps = 3/101 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +T+ +V +R+ + + +S L NY+KDGT FWN +TVTPI DD + ++++
Sbjct: 126 RFLQGEDTNLEKVATLRETIDSEESVTVSLRNYRKDGTEFWNRVTVTPIYDDDDELVRYL 185
Query: 78 GMQVEVSKYTEGVNDKALRP-NGLSKSLIRYDARQKEKALG 117
G Q +V+ E +K L N +++L+ D Q+ +G
Sbjct: 186 GTQQDVTGRKE--REKRLTELNQATQALMTADTHQEVADIG 224
>gi|418058507|ref|ZP_12696479.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium extorquens
DSM 13060]
gi|373567931|gb|EHP93888.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium extorquens
DSM 13060]
Length = 533
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 36/103 (34%), Positives = 58/103 (56%), Gaps = 14/103 (13%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD +RDAV + +LNY+KDG+ FWN L V+P+ + +G + F
Sbjct: 79 RFLQGPETDPATRALVRDAVAARRDVATEILNYRKDGSSFWNALFVSPVYNAAGDLLYFF 138
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
G Q+++++ + L + L ++ QK +A+G +T
Sbjct: 139 GSQLDITR-------RRLAEDSLHQA-------QKMEAIGRLT 167
>gi|422669969|ref|ZP_16729805.1| histidine kinase, partial [Pseudomonas syringae pv. aptata str. DSM
50252]
gi|330982314|gb|EGH80417.1| histidine kinase [Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 460
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 14/99 (14%)
Query: 22 GPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGMQV 81
GP+TD+ V+ IRDA+ +LNY+KDG+ FWN L ++P+ +D+G I F Q+
Sbjct: 1 GPDTDRAAVQSIRDAIEERVDISTEILNYRKDGSSFWNALFISPVYNDAGDLIYFFASQL 60
Query: 82 EVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
++S+ + ++ALR QK +ALG +T
Sbjct: 61 DISRRRDA--EEALR------------QAQKMEALGQLT 85
>gi|254562311|ref|YP_003069406.1| hybrid histidine kinase [Methylobacterium extorquens DM4]
gi|254269589|emb|CAX25559.1| putative hybrid histidine kinase with PAS/PAC and response
regulator receiver domains [Methylobacterium extorquens
DM4]
Length = 533
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 36/103 (34%), Positives = 58/103 (56%), Gaps = 14/103 (13%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD +RDAV + +LNY+KDG+ FWN L V+P+ + +G + F
Sbjct: 79 RFLQGPETDPATRALVRDAVAARRDVATEILNYRKDGSSFWNALFVSPVYNAAGDLLYFF 138
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
G Q+++++ + L + L ++ QK +A+G +T
Sbjct: 139 GSQLDITR-------RRLAEDSLHQA-------QKMEAIGRLT 167
>gi|240139889|ref|YP_002964366.1| hybrid histidine kinase with PAS/PAC and response regulator
receiver domains [Methylobacterium extorquens AM1]
gi|240009863|gb|ACS41089.1| putative hybrid histidine kinase with PAS/PAC and response
regulator receiver domains [Methylobacterium extorquens
AM1]
Length = 533
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 36/103 (34%), Positives = 58/103 (56%), Gaps = 14/103 (13%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD +RDAV + +LNY+KDG+ FWN L V+P+ + +G + F
Sbjct: 79 RFLQGPETDPATRALVRDAVAARRDVATEILNYRKDGSSFWNALFVSPVYNAAGDLLYFF 138
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
G Q+++++ + L + L ++ QK +A+G +T
Sbjct: 139 GSQLDITR-------RRLAEDSLHQA-------QKMEAIGRLT 167
>gi|218531393|ref|YP_002422209.1| histidine kinase [Methylobacterium extorquens CM4]
gi|218523696|gb|ACK84281.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium extorquens
CM4]
Length = 533
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 36/103 (34%), Positives = 58/103 (56%), Gaps = 14/103 (13%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD +RDAV + +LNY+KDG+ FWN L V+P+ + +G + F
Sbjct: 79 RFLQGPETDPATRALVRDAVAARRDVATEILNYRKDGSSFWNALFVSPVYNAAGDLLYFF 138
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
G Q+++++ + L + L ++ QK +A+G +T
Sbjct: 139 GSQLDITR-------RRLAEDSLHQA-------QKMEAIGRLT 167
>gi|358059757|dbj|GAA94526.1| hypothetical protein E5Q_01178 [Mixia osmundae IAM 14324]
Length = 1552
Score = 69.3 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 11/104 (10%)
Query: 5 TGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVT 64
TG C RFLQGP T + V +IR A+ G++ LLNY+++G PF+NLL +
Sbjct: 1229 TGYSRQAICSRNCRFLQGPSTSREAVARIRVALNTGQACTELLLNYRQNGQPFFNLLCIF 1288
Query: 65 PIKDDSGKTIKFIGMQVEVS---------KYTEGVNDKALRPNG 99
P++D G + G Q+ VS ++ G+ D+ PNG
Sbjct: 1289 PLRDTDGSVSYYCGGQINVSGPLKSSKSLRFLVGIEDE--EPNG 1330
>gi|163852555|ref|YP_001640598.1| histidine kinase [Methylobacterium extorquens PA1]
gi|163664160|gb|ABY31527.1| PAS sensor protein [Methylobacterium extorquens PA1]
Length = 533
Score = 69.3 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 36/103 (34%), Positives = 58/103 (56%), Gaps = 14/103 (13%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD +RDAV + +LNY+KDG+ FWN L V+P+ + +G + F
Sbjct: 79 RFLQGPETDPATRALVRDAVAARRDVATEILNYRKDGSSFWNALFVSPVYNAAGDLLYFF 138
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
G Q+++++ + L + L ++ QK +A+G +T
Sbjct: 139 GSQLDITR-------RRLAEDSLHQA-------QKMEAIGRLT 167
>gi|85709182|ref|ZP_01040248.1| sensory box histidine kinase [Erythrobacter sp. NAP1]
gi|85690716|gb|EAQ30719.1| sensory box histidine kinase [Erythrobacter sp. NAP1]
Length = 358
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD V KIR A+ +G+ L NYK DGT F N L ++PI++D G + F+
Sbjct: 57 RFLQGDDTDPRSVAKIRQALEDGEDITVDLANYKADGTKFTNRLLISPIRNDVGDIVSFL 116
Query: 78 GMQVEVSKYTEGVNDKA 94
G+Q +++ E + D +
Sbjct: 117 GIQRDLTGQEEELPDPS 133
>gi|448678692|ref|ZP_21689699.1| HTR-like protein [Haloarcula argentinensis DSM 12282]
gi|445772679|gb|EMA23724.1| HTR-like protein [Haloarcula argentinensis DSM 12282]
Length = 726
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 43/68 (63%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQG TD V+ +RDA+ G+ L NY+KDGT FWN + + P++DD G + ++
Sbjct: 320 RILQGENTDPEPVDALRDAIDAGEQVSVELRNYRKDGTEFWNRVRIAPVRDDDGTVVNYV 379
Query: 78 GMQVEVSK 85
G Q ++++
Sbjct: 380 GFQQDITE 387
>gi|32473151|ref|NP_866145.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
gi|32397830|emb|CAD73831.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
Length = 1637
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 5/84 (5%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD V +IR A+ G+S + NY+K+G PFWN L +TP+ D++G F+
Sbjct: 1036 RFLQGEHTDNETVLRIRRALGRGESVRELIKNYRKNGEPFWNDLYITPVHDENGILTHFV 1095
Query: 78 GMQVEVSKYTEGV-----NDKALR 96
G+Q +V++ E N++ +R
Sbjct: 1096 GVQNDVTERIEAARQTETNERTIR 1119
>gi|383783324|ref|YP_005467890.1| diguanylate cyclase [Leptospirillum ferrooxidans C2-3]
gi|383082233|dbj|BAM05760.1| putative diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Leptospirillum ferrooxidans C2-3]
Length = 1237
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 47/67 (70%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
+ LQ T+ V++IR+A+ G+ + G++LN KKDG+ FWNLLT+ P+K SG+ F+
Sbjct: 654 KILQCSGTNSQTVDEIREALSRGEVFHGQILNAKKDGSTFWNLLTINPMKSHSGEITGFV 713
Query: 78 GMQVEVS 84
G+Q +VS
Sbjct: 714 GVQRDVS 720
>gi|242345221|dbj|BAH80324.1| aureochrome1-like protein [Chattonella marina var. antiqua]
Length = 370
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 45/68 (66%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T+ + KIR A+ G+ +LNY+ DG+ FWN V+ ++D +GK + FI
Sbjct: 287 RFLQGPDTNPKSIAKIRRAIATGEDCSVCILNYRVDGSTFWNNFYVSALRDINGKVVNFI 346
Query: 78 GMQVEVSK 85
G+Q EV +
Sbjct: 347 GVQSEVEE 354
>gi|440712941|ref|ZP_20893552.1| signal transduction histidine kinase with CheB and CheR activity
[Rhodopirellula baltica SWK14]
gi|436442329|gb|ELP35476.1| signal transduction histidine kinase with CheB and CheR activity
[Rhodopirellula baltica SWK14]
Length = 1637
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 5/84 (5%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD V +IR A+ G+S + NY+K+G PFWN L +TP+ D++G F+
Sbjct: 1036 RFLQGEHTDNETVLRIRRALGRGESVRELIKNYRKNGEPFWNDLYITPVHDENGILTHFV 1095
Query: 78 GMQVEVSKYTEGV-----NDKALR 96
G+Q +V++ E N++ +R
Sbjct: 1096 GVQNDVTERIEAARQTETNERTIR 1119
>gi|255558228|ref|XP_002520141.1| twin lov protein, putative [Ricinus communis]
gi|223540633|gb|EEF42196.1| twin lov protein, putative [Ricinus communis]
Length = 375
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 69/127 (54%), Gaps = 14/127 (11%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKD-DSGKTIKF 76
R QGP+T++ + +IR+A+R ++ LLNY+KDGTPFW L +TP+ + G+ + F
Sbjct: 72 RIFQGPKTNRRSIMEIREAIREERALQISLLNYRKDGTPFWLLFHMTPVFNKKDGRVVHF 131
Query: 77 IGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRSQSHIRAL 136
+ +QV + K G AL +G I + + ++E S+ E+ R L
Sbjct: 132 VAVQVPILKRRNG---SALSEDGSGLREIVFGSCRREVCSDSLVEL----------GRVL 178
Query: 137 SLDTTNK 143
SLD+ ++
Sbjct: 179 SLDSDSR 185
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 41/55 (74%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGK 72
RFL G +TD++ +E+I+ ++ ++ R+LNY+++ T FWNLL ++P+++ +GK
Sbjct: 289 RFLGGIDTDRSVIEQIKKNIQAEQACTVRILNYRRNKTTFWNLLHISPVRNATGK 343
>gi|297817884|ref|XP_002876825.1| pac motif-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297322663|gb|EFH53084.1| pac motif-containing protein [Arabidopsis lyrata subsp. lyrata]
Length = 386
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 53/82 (64%), Gaps = 4/82 (4%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNY--KKDGTPFWNLLTVTPIKDDSGKTIK 75
RFL G +TD + + +I++ + G+S ++LNY +KD + FWNLL ++P+++ SGKT
Sbjct: 284 RFLSGVDTDSSVLYEIKECILKGQSCTVQILNYSNRKDKSSFWNLLHISPVRNASGKTAY 343
Query: 76 FIGMQVEVSKYTEGVNDKALRP 97
F+G+QVE S K LRP
Sbjct: 344 FVGVQVEAS--CRNTESKELRP 363
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI-KDDSGKTIKF 76
+ QGP+T++ + +IR+A+R +S LLNY+K G+PFW L ++P+ D GK I F
Sbjct: 67 KVFQGPKTNRRSIMEIREAIREERSVMVSLLNYRKSGSPFWMLFHMSPVFGRDDGKVINF 126
Query: 77 IGMQVEVS 84
+ +QV +S
Sbjct: 127 VAVQVPIS 134
>gi|448653703|ref|ZP_21681301.1| HTR-like protein [Haloarcula californiae ATCC 33799]
gi|445767291|gb|EMA18398.1| HTR-like protein [Haloarcula californiae ATCC 33799]
Length = 837
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 17 SRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKF 76
SRFLQG TD V ++R+A+ + L NY+KDGT FWN +T+ P+ D +G+ +
Sbjct: 307 SRFLQGENTDPGPVAEMREAIDAEEPVTVELQNYRKDGTEFWNRVTIAPVTDGTGEVTNY 366
Query: 77 IGMQVEVSKYTE 88
IG Q +++++ E
Sbjct: 367 IGFQEDMTEHVE 378
>gi|344942477|ref|ZP_08781764.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
SV96]
gi|344259764|gb|EGW20036.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
SV96]
Length = 1278
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 39/110 (35%), Positives = 61/110 (55%), Gaps = 7/110 (6%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ETD+ V++IR ++ G++ L NY+K+GTP+WN L + P+ D+ G+ FI
Sbjct: 559 RFLQGKETDQPGVDEIRAVLQEGRAGGALLHNYRKNGTPYWNDLRIAPVHDEQGRLSHFI 618
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVK 127
G+ +V++ + + L KS R Q +G+ IQT K
Sbjct: 619 GIADDVTERRDA-------GDALLKSEERLRRSQHYANIGTWDWNIQTGK 661
>gi|300311768|ref|YP_003775860.1| PAS/PAC sensor hybrid histidine kinase [Herbaspirillum seropedicae
SmR1]
gi|300074553|gb|ADJ63952.1| PAS/PAC sensor hybrid histidine kinase protein [Herbaspirillum
seropedicae SmR1]
Length = 552
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD++ V ++R AV + LLNY+K+G+ FWN L ++P+ D G F
Sbjct: 92 RFLQGPETDRSVVAEVRRAVAERREIATELLNYRKNGSTFWNALFISPVYDQQGNLKYFF 151
Query: 78 GMQVEVSK 85
Q+++S+
Sbjct: 152 SSQLDISR 159
>gi|357406412|ref|YP_004918336.1| PAS sensor protein [Methylomicrobium alcaliphilum 20Z]
gi|351719077|emb|CCE24751.1| PAS sensor protein [Methylomicrobium alcaliphilum 20Z]
Length = 164
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 50/68 (73%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + D+ E+E +R+A+RN ++ L NYKK+G F+N L+VTP+ D+ G+ I F+
Sbjct: 63 RFLQGKDHDQPEIEILREAIRNQRAVEVTLKNYKKNGDLFYNRLSVTPLFDNEGRLIYFL 122
Query: 78 GMQVEVSK 85
G+Q ++++
Sbjct: 123 GIQYDITE 130
>gi|116255520|ref|YP_771353.1| hypothetical protein pRL110320 [Rhizobium leguminosarum bv. viciae
3841]
gi|115260168|emb|CAK03271.1| putative regulator [Rhizobium leguminosarum bv. viciae 3841]
Length = 345
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 42/69 (60%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP T V +IR A+ + +LNYKK G FWN L ++P+ D GK + F
Sbjct: 76 RFLQGPATSPIAVAEIRAAIAGEREVSVEILNYKKSGEQFWNRLHLSPVHGDDGKILYFF 135
Query: 78 GMQVEVSKY 86
G Q+++++Y
Sbjct: 136 GSQIDMTEY 144
>gi|386288863|ref|ZP_10066003.1| multi-sensor hybrid histidine kinase [gamma proteobacterium BDW918]
gi|385278418|gb|EIF42390.1| multi-sensor hybrid histidine kinase [gamma proteobacterium BDW918]
Length = 858
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 52/78 (66%), Gaps = 2/78 (2%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78
FLQGP+TD VE++RD + GK + ++N+ K+GTP+W + +P+ ++ G+ + FI
Sbjct: 193 FLQGPQTDHRAVEQMRDGLAQGKGFNVEIINFNKNGTPYWLAIDCSPVLNEHGELVNFIA 252
Query: 79 MQVEVSKYTEGVNDKALR 96
++ E+++ + ++ALR
Sbjct: 253 VEREITERKQ--TEQALR 268
>gi|56751332|ref|YP_172033.1| hypothetical protein syc1323_c [Synechococcus elongatus PCC 6301]
gi|81298999|ref|YP_399207.1| diguanylate cyclase/phosphodiesterase [Synechococcus elongatus PCC
7942]
gi|56686291|dbj|BAD79513.1| hypothetical protein [Synechococcus elongatus PCC 6301]
gi|81167880|gb|ABB56220.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
PAS/PAC sensor(s) [Synechococcus elongatus PCC 7942]
Length = 578
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + + + +R A+RNG++ L NY+KDG+ FWN LT+ PI D GK ++
Sbjct: 74 RFLQGSDRAQPGITTLRQAIRNGQACEVVLRNYRKDGSLFWNQLTIAPITDGQGKVSHYV 133
Query: 78 GMQVEVSKYTEGVNDKALRPNGL 100
+Q +++ + E ++AL+ G+
Sbjct: 134 ALQRDITAFKE--QEQALQRQGI 154
>gi|449138117|ref|ZP_21773413.1| signal transduction histidine kinase with CheB and CheR activity
[Rhodopirellula europaea 6C]
gi|448883278|gb|EMB13815.1| signal transduction histidine kinase with CheB and CheR activity
[Rhodopirellula europaea 6C]
Length = 1637
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 59/102 (57%), Gaps = 10/102 (9%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ + +E+IG C RFLQG TD V +IR A++ G+S + NY+K+G PFWN
Sbjct: 1022 MTGFSEQEIIGRNC----RFLQGEHTDDETVLRIRRALKRGESVRELIKNYRKNGEPFWN 1077
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGV-----NDKALR 96
L +TP+ D+ F+G+Q +V++ E N++ +R
Sbjct: 1078 DLYITPVHDEDNTLTHFVGIQNDVTERIEAARRTETNERTIR 1119
>gi|428309474|ref|YP_007120451.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
gi|428251086|gb|AFZ17045.1| PAS domain S-box [Microcoleus sp. PCC 7113]
Length = 494
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 47/68 (69%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD+ + ++R+A+R GK L NY+K+GT FWN L+V+PI D G F+
Sbjct: 206 RFLQGKDTDQPALNELREAIREGKGCKVILSNYRKNGTLFWNELSVSPIYDAEGNLTHFV 265
Query: 78 GMQVEVSK 85
G+Q ++++
Sbjct: 266 GIQSDITE 273
>gi|310801129|gb|EFQ36022.1| hypothetical protein GLRG_11166 [Glomerella graminicola M1.001]
Length = 671
Score = 68.9 bits (167), Expect = 7e-10, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 46/67 (68%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TDK+ V+++RD++ + +LNY +DGTP+WNLL P+ D +GK ++
Sbjct: 304 RFLQGTLTDKSTVKRVRDSMLRQEESLELILNYTRDGTPYWNLLFTCPLLDSAGKIRYYL 363
Query: 78 GMQVEVS 84
G Q++VS
Sbjct: 364 GGQIDVS 370
>gi|406866633|gb|EKD19672.1| nonphototropic hypocotyl 1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 606
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 45/75 (60%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD+ V ++R ++ + LLNY+K+G PFWNLL V P+ D+SG+ F+
Sbjct: 298 RFLQGDRTDRVAVRRLRASIDACEETVELLLNYRKNGDPFWNLLYVAPLLDESGEVCFFL 357
Query: 78 GMQVEVSKYTEGVND 92
G Q+ S ND
Sbjct: 358 GGQINCSTTIHSCND 372
>gi|388511109|gb|AFK43618.1| unknown [Medicago truncatula]
Length = 394
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 46/65 (70%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFL G TD + ++ IR++++ K R+LNY+KD + FWNLL ++P++D +GK F+
Sbjct: 289 RFLGGRNTDDSALQLIRESIKTEKLCTVRILNYRKDKSSFWNLLHISPVRDATGKVAYFV 348
Query: 78 GMQVE 82
G+Q+E
Sbjct: 349 GVQIE 353
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 20 LQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIK-DDSGKTIKFIG 78
QG T + V +IR+AVR + L+NY+K+GTPFW LTV+P+ SG + F+
Sbjct: 67 FQGSATCRRSVMEIREAVREERETNVVLVNYRKNGTPFWVFLTVSPVFCVKSGAVVHFVA 126
Query: 79 MQV 81
+QV
Sbjct: 127 VQV 129
>gi|357486599|ref|XP_003613587.1| Blue-light-activated histidine kinase [Medicago truncatula]
gi|355514922|gb|AES96545.1| Blue-light-activated histidine kinase [Medicago truncatula]
Length = 394
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 46/65 (70%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFL G TD + ++ IR++++ K R+LNY+KD + FWNLL ++P++D +GK F+
Sbjct: 289 RFLGGRNTDDSALQLIRESIKTEKLCTVRILNYRKDKSSFWNLLHISPVRDATGKVAYFV 348
Query: 78 GMQVE 82
G+Q+E
Sbjct: 349 GVQIE 353
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 20 LQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIK-DDSGKTIKFIG 78
QG T + V +IR+AVR + L+NY+K+GTPFW LTV+P+ SG + F+
Sbjct: 67 FQGSATCRRSVMEIREAVREERETNVVLVNYRKNGTPFWVFLTVSPVFCVKSGAVVHFVA 126
Query: 79 MQV 81
+QV
Sbjct: 127 VQV 129
>gi|392421249|ref|YP_006457853.1| sensory box protein [Pseudomonas stutzeri CCUG 29243]
gi|390983437|gb|AFM33430.1| sensory box protein [Pseudomonas stutzeri CCUG 29243]
Length = 146
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 52/74 (70%), Gaps = 2/74 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLL-NYKKDGTPFWNLLTVTPIKDDSGKTIKF 76
RFLQG + D+ ++ IR+AV+N + C +++ NY+KDGTPFWN L++TP+ +++ + F
Sbjct: 54 RFLQGEDRDQPALQAIREAVKNNQP-CRQIIRNYRKDGTPFWNELSITPVFNEADQLTYF 112
Query: 77 IGMQVEVSKYTEGV 90
IG+Q V+ + +
Sbjct: 113 IGIQKNVTAEVDAL 126
>gi|424875649|ref|ZP_18299311.1| PAS domain S-box [Rhizobium leguminosarum bv. viciae WSM1455]
gi|393171350|gb|EJC71397.1| PAS domain S-box [Rhizobium leguminosarum bv. viciae WSM1455]
Length = 345
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 42/69 (60%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP T V +IR A+ + +LNYKK G FWN L ++P+ D GK + F
Sbjct: 76 RFLQGPATSPIAVAEIRAAIAGEREVSVEILNYKKSGEQFWNRLHLSPVHGDDGKILYFF 135
Query: 78 GMQVEVSKY 86
G Q+++++Y
Sbjct: 136 GSQIDMTEY 144
>gi|192361936|ref|YP_001984165.1| sensory box protein [Cellvibrio japonicus Ueda107]
gi|190688101|gb|ACE85779.1| sensory box protein [Cellvibrio japonicus Ueda107]
Length = 581
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 43/67 (64%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78
FLQGPETD VE++R ++ + + +LNY K G P+W L++ P+ DDSG+ FI
Sbjct: 301 FLQGPETDPGTVERMRQHIKRQEPFFDEVLNYTKTGEPYWVSLSINPVFDDSGQLKSFIS 360
Query: 79 MQVEVSK 85
+Q +++
Sbjct: 361 VQANITE 367
>gi|358248936|ref|NP_001240221.1| protein TWIN LOV 1-like [Glycine max]
gi|156069000|gb|ABU44493.1| PAS/LOV protein 1 [Glycine max]
Length = 390
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 45/65 (69%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFL G +TD + + IR++++ + R+LNY+KD + FWN L ++P++D SGK F+
Sbjct: 286 RFLGGTDTDTSTLHLIRESIKTEQPCTVRILNYRKDKSSFWNFLHISPVRDASGKVAYFV 345
Query: 78 GMQVE 82
G+Q+E
Sbjct: 346 GVQIE 350
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 20 LQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI-KDDSGKTIKFIG 78
QGP T + V +IR+AVR ++ LLNY++DGTPFW L V+P+ D G + F+
Sbjct: 75 FQGPRTSRKSVIEIREAVREERNAQVVLLNYRRDGTPFWMLFRVSPVFSSDGGAVVHFVA 134
Query: 79 MQVEVSK 85
+QV + K
Sbjct: 135 VQVPLQK 141
>gi|188582577|ref|YP_001926022.1| histidine kinase [Methylobacterium populi BJ001]
gi|179346075|gb|ACB81487.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
BJ001]
Length = 531
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 44/68 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD ++R A+ + +LNY+KDG+ FWN L V+P+ + +G + F
Sbjct: 79 RFLQGPETDPATRAQVRAAIEQRRDIATEILNYRKDGSSFWNALFVSPVYNAAGDLVYFF 138
Query: 78 GMQVEVSK 85
G Q+++++
Sbjct: 139 GSQLDITR 146
>gi|356498170|ref|XP_003517926.1| PREDICTED: protein TWIN LOV 1-like [Glycine max]
Length = 388
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 46/67 (68%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFL G +TD + + IR++++ + R+LNY+KD + FWN L ++P++D SGK F+
Sbjct: 284 RFLGGTDTDTSTLHLIRESIKTEQPCTVRILNYRKDKSSFWNFLHISPVRDASGKVAYFV 343
Query: 78 GMQVEVS 84
G+Q+E S
Sbjct: 344 GVQIEDS 350
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 20 LQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI-KDDSGKTIKFIG 78
QGP T + V +IR+AVR ++ LLNY+KDGTPFW L V P+ D G + F+
Sbjct: 73 FQGPRTSRKSVIEIREAVREERNAQVVLLNYRKDGTPFWMLFRVCPVFSSDGGAVVHFVA 132
Query: 79 MQVEVSKYT-EGVND 92
+QV + K GV D
Sbjct: 133 VQVPLQKKEGSGVRD 147
>gi|359395682|ref|ZP_09188734.1| Blue-light photoreceptor [Halomonas boliviensis LC1]
gi|357969947|gb|EHJ92394.1| Blue-light photoreceptor [Halomonas boliviensis LC1]
Length = 139
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 49/72 (68%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQ + D++ + IRDA+++G L NY+KDGT FWN L++TP+ D++ K + +I
Sbjct: 54 RFLQNEDRDQDALAVIRDALKDGHPSREVLRNYRKDGTMFWNELSITPVYDEADKLMYYI 113
Query: 78 GMQVEVSKYTEG 89
G+Q +V++ E
Sbjct: 114 GVQKDVTERVEA 125
>gi|429856375|gb|ELA31285.1| blue light receptor [Colletotrichum gloeosporioides Nara gc5]
Length = 875
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 44/67 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD+ + ++++A+ K +LNYKK+G PFWNLL V P+ +++GK FI
Sbjct: 603 RFLQGAHTDRVPIRRLKNAIDERKESVELILNYKKNGDPFWNLLYVAPLYNEAGKLAFFI 662
Query: 78 GMQVEVS 84
G Q+ S
Sbjct: 663 GGQINCS 669
>gi|87200360|ref|YP_497617.1| hypothetical protein Saro_2346 [Novosphingobium aromaticivorans DSM
12444]
gi|87136041|gb|ABD26783.1| signal transduction histidine kinase [Novosphingobium
aromaticivorans DSM 12444]
Length = 364
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 40/67 (59%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD V +I+ A+ LLNY+KDGT FWN L + P+ D G+ I F
Sbjct: 93 RFLQGPGTDPAAVARIKAALEREDVIVVELLNYRKDGTAFWNALHLGPVYDADGRLIYFF 152
Query: 78 GMQVEVS 84
G Q +VS
Sbjct: 153 GSQWDVS 159
>gi|443323721|ref|ZP_21052724.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
protein [Gloeocapsa sp. PCC 73106]
gi|442786507|gb|ELR96237.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
protein [Gloeocapsa sp. PCC 73106]
Length = 1137
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 58/100 (58%), Gaps = 7/100 (7%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG E + E+E+IR+A+ GK L NY++DGT FWN L +TPI D G F+
Sbjct: 245 RFLQGKERLQPEIEEIRNAIAQGKECYTILRNYRQDGTLFWNELYLTPICDRHGSLTHFL 304
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALG 117
G+Q +++ ++ + L +S R+ A ++ A+G
Sbjct: 305 GIQSDIT-------NRKIAEQALFESESRFRAIFEQAAVG 337
>gi|119488887|ref|ZP_01621849.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
gi|119455048|gb|EAW36190.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
Length = 1261
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 46/67 (68%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + D+ + ++R+++ G+ + NY+KDGTPFWN L+++P+ D+ G FI
Sbjct: 388 RFLQGEDIDQPNLIEMRNSIAEGRETKIIVRNYRKDGTPFWNKLSISPVHDEEGNLTHFI 447
Query: 78 GMQVEVS 84
G+Q ++S
Sbjct: 448 GIQEDIS 454
>gi|406863657|gb|EKD16704.1| white collar [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 663
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 23/157 (14%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TDK+ + ++ A+ G+ +LNY++DGTPF NLL +P+ DD G FI
Sbjct: 223 RFLQGPGTDKDALLRLAKAITLGQESNEVILNYRRDGTPFVNLLMCSPLYDDKGIIRYFI 282
Query: 78 GMQVEVSKYT-EGVNDKALR-------------------PNGLSKSLIRYDARQKEKALG 117
G QV+V+ +G+ ++ R P+ SK RY + + +++L
Sbjct: 283 GAQVDVTGLVIDGLGIESFRALLHNDEVQEMEASLEAASPHLQSKFSPRYQSPKTKESLQ 342
Query: 118 SITEVIQTVKRSQSHI---RALSLDTTNKLEEKRSSI 151
+ E+ + +S + S D +N RSS+
Sbjct: 343 RLQELSTMFSQDESDVACKNGRSCDDSNDGASIRSSV 379
>gi|373956387|ref|ZP_09616347.1| PAS/PAC sensor signal transduction histidine kinase
[Mucilaginibacter paludis DSM 18603]
gi|373892987|gb|EHQ28884.1| PAS/PAC sensor signal transduction histidine kinase
[Mucilaginibacter paludis DSM 18603]
Length = 508
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 67/122 (54%), Gaps = 5/122 (4%)
Query: 5 TGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVT 64
T KE+IG C RFLQ + ++ ++R+A++NG+ + NYKK+G WN L ++
Sbjct: 56 TNKEIIGHN--C-RFLQDGDNEQEGRRRLREAIKNGEHCQVEIRNYKKNGRMIWNELMIS 112
Query: 65 PIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRY--DARQKEKALGSITEV 122
P+KD G FIG+Q ++++ E + A L + ++ D ++ E L SI E
Sbjct: 113 PVKDRDGNVTNFIGIQNDITRRKEAEDALASEKQNLEERVLERTEDLQESEAYLASIIET 172
Query: 123 IQ 124
I+
Sbjct: 173 IR 174
>gi|423064589|ref|ZP_17053379.1| two-component sensor histidine kinase [Arthrospira platensis C1]
gi|406713832|gb|EKD09000.1| two-component sensor histidine kinase [Arthrospira platensis C1]
Length = 709
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78
FLQGP +D + +IR ++ K Y G L+NYK+ G+P+W +++TPI D G KFI
Sbjct: 210 FLQGPLSDTETIHQIRACLKEHKPYRGELINYKRHGSPYWLSISITPIFDHQGDLTKFIA 269
Query: 79 MQVEVS---KYTEGVNDKALRPNGLSKSL 104
++ ++S K E + +R L +++
Sbjct: 270 IETDISDRKKMEEALRQSEVRNRSLIEAI 298
>gi|296131526|ref|YP_003638776.1| putative PAS/PAC sensor protein [Cellulomonas flavigena DSM 20109]
gi|296023341|gb|ADG76577.1| putative PAS/PAC sensor protein [Cellulomonas flavigena DSM 20109]
Length = 570
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 34/104 (32%), Positives = 61/104 (58%), Gaps = 2/104 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQ +TD + ++R A+ +G LLN +KDG+PFWN L +T ++D +G+ + +
Sbjct: 69 RFLQCADTDPEAIHRLRTALAHGDDVQVVLLNVRKDGSPFWNQLAITQLRDATGQVVHRV 128
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYD--ARQKEKALGSI 119
G+QV+V+ +G + L + + ++ R + AR E+ G +
Sbjct: 129 GVQVDVTAEADGEAARTLELSLMHRTADRLELLARMGEELSGHL 172
>gi|55377685|ref|YP_135535.1| HTR-like protein [Haloarcula marismortui ATCC 43049]
gi|55230410|gb|AAV45829.1| HTR-like protein [Haloarcula marismortui ATCC 43049]
Length = 748
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 37/112 (33%), Positives = 63/112 (56%), Gaps = 9/112 (8%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ET+ V+ +R A+ + L NY+KDGT FWN +++ P++D+ G + ++
Sbjct: 304 RFLQGEETEAEPVDAMRAAIDADEPVSVELRNYRKDGTMFWNQVSIAPVRDNDGTVVNYV 363
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKS---LIRYDARQKEKALGSITEVIQTV 126
G Q ++++ E R LS+S L++ D R++ +G E +TV
Sbjct: 364 GFQRDITERKE----HERRLKALSESVQDLLQADTREEVAEIG--VETARTV 409
>gi|376006569|ref|ZP_09783817.1| putative two-component sensor histidine kinase [Arthrospira sp. PCC
8005]
gi|375325069|emb|CCE19570.1| putative two-component sensor histidine kinase [Arthrospira sp. PCC
8005]
Length = 709
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78
FLQGP +D + +IR ++ K Y G L+NYK+ G+P+W +++TPI D G KFI
Sbjct: 210 FLQGPLSDTETIHQIRACLKEHKPYRGELINYKRHGSPYWLSISITPIFDHQGDLTKFIA 269
Query: 79 MQVEVS---KYTEGVNDKALRPNGLSKSL 104
++ ++S K E + +R L +++
Sbjct: 270 IETDISDRKKMEEALRQSEVRNRSLIEAI 298
>gi|383785590|ref|YP_005470160.1| hypothetical protein LFE_2358 [Leptospirillum ferrooxidans C2-3]
gi|383084503|dbj|BAM08030.1| hypothetical protein LFE_2358 [Leptospirillum ferrooxidans C2-3]
Length = 489
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Query: 16 CSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIK 75
CS FLQG +TD+ E+ +IR A+ +G S+ G L NY+KDG+ F+N L+++P+ + G
Sbjct: 68 CS-FLQGSDTDQAEIRQIRQALSSGTSFHGVLRNYRKDGSLFYNELSISPVTNSDGAVQY 126
Query: 76 FIGMQVEVSK 85
F+G Q +V++
Sbjct: 127 FVGYQQDVTQ 136
>gi|209523403|ref|ZP_03271958.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira
maxima CS-328]
gi|209496145|gb|EDZ96445.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira
maxima CS-328]
Length = 709
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78
FLQGP +D + +IR ++ K Y G L+NYK+ G+P+W +++TPI D G KFI
Sbjct: 210 FLQGPLSDTETIHQIRACLKEHKPYRGELINYKRHGSPYWLSISITPIFDHQGDLTKFIA 269
Query: 79 MQVEVS---KYTEGVNDKALRPNGLSKSL 104
++ ++S K E + +R L +++
Sbjct: 270 IETDISDRKKMEEALRQSEVRNRSLIEAI 298
>gi|350537683|ref|NP_001234816.1| LOV/LOV protein [Solanum lycopersicum]
gi|311692316|dbj|BAJ24889.1| LOV/LOV protein [Solanum lycopersicum]
Length = 398
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFL G +T++ +I+ ++N + +LNY+KDGT FWN L ++PI+ SGK F+
Sbjct: 296 RFLSGEDTERGTQFQIKQCIQNEQPCTVHILNYRKDGTSFWNFLHISPIRSASGKVAYFV 355
Query: 78 GMQVEVSKYTEGVNDKALRP 97
G+Q+E + TE + L P
Sbjct: 356 GIQIEDT--TEAREKQGLNP 373
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI-KDDSGKTIKF 76
R QGP+T++ V IR+A+R + LLNY+KDGTPFW L + P+ + G+ + F
Sbjct: 67 RVFQGPKTNRRSVMAIREAIREERGIQISLLNYRKDGTPFWMLFNMCPVYSEKDGRVVHF 126
Query: 77 IGMQVEV 83
+G+QV +
Sbjct: 127 LGIQVPI 133
>gi|90420418|ref|ZP_01228325.1| sensory box histidine kinase, possible photoreceptor [Aurantimonas
manganoxydans SI85-9A1]
gi|90335146|gb|EAS48899.1| sensory box histidine kinase, possible photoreceptor [Aurantimonas
manganoxydans SI85-9A1]
Length = 389
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 46/72 (63%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD EV+++R A+ + +L NY+KDG+ FWN L V+P++ + G F
Sbjct: 86 RFLQGPDTDPTEVDRLRQAIARKEPVNVQLRNYRKDGSAFWNSLYVSPVRGEDGDVQFFF 145
Query: 78 GMQVEVSKYTEG 89
Q+++++ E
Sbjct: 146 ASQLDMTERVEA 157
>gi|448639826|ref|ZP_21676974.1| HTR-like protein [Haloarcula sinaiiensis ATCC 33800]
gi|445762353|gb|EMA13574.1| HTR-like protein [Haloarcula sinaiiensis ATCC 33800]
Length = 748
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/112 (33%), Positives = 63/112 (56%), Gaps = 9/112 (8%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ET+ V+ +R A+ + L NY+KDGT FW+ +++ P++DD G + ++
Sbjct: 304 RFLQGEETEAEPVDAMRAAIDADEPVSVELRNYRKDGTMFWSQVSIAPVRDDDGTVVNYV 363
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKS---LIRYDARQKEKALGSITEVIQTV 126
G Q ++++ E R LS+S L++ D R++ +G E +TV
Sbjct: 364 GFQQDITERKE----HERRLKALSESVQDLLQADTREEVAEIG--VETARTV 409
>gi|85374357|ref|YP_458419.1| hypothetical protein ELI_07650 [Erythrobacter litoralis HTCC2594]
gi|84787440|gb|ABC63622.1| sensory box histidine kinase [Erythrobacter litoralis HTCC2594]
Length = 362
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD+++V +IRDA+ + LLNY+KDG+ FWN L + PI D+SGK F
Sbjct: 90 RFLQGARTDESQVARIRDALAKEEVAVVELLNYRKDGSTFWNALHLGPIYDESGKLKYFF 149
Query: 78 GMQVEVSKYTEG 89
Q +V+ E
Sbjct: 150 RSQWDVTDIHEA 161
>gi|447916567|ref|YP_007397135.1| histidine kinase [Pseudomonas poae RE*1-1-14]
gi|445200430|gb|AGE25639.1| histidine kinase [Pseudomonas poae RE*1-1-14]
Length = 524
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 45/68 (66%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETDK + + + A+ C +LNY+KDG+ FWN + + P+ +++G+ + F
Sbjct: 72 RFLQGPETDKCALAQAQQAIERHHEVCVEVLNYRKDGSTFWNEIFIAPLFNEAGQLVYFF 131
Query: 78 GMQVEVSK 85
Q++VS+
Sbjct: 132 ASQLDVSR 139
>gi|299115890|emb|CBN75899.1| n/a (Partial) [Ectocarpus siliculosus]
Length = 261
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%)
Query: 17 SRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKF 76
+RFLQGP+TD+ + +R A+ G+ LLNYK DGT FWN V ++DD + + +
Sbjct: 155 ARFLQGPDTDRKSIATLRQAITRGEDVSVCLLNYKADGTTFWNQFFVAALRDDQHRIVNY 214
Query: 77 IGMQ 80
+G Q
Sbjct: 215 VGAQ 218
>gi|359785153|ref|ZP_09288308.1| putative PAS/PAC sensor protein [Halomonas sp. GFAJ-1]
gi|359297451|gb|EHK61684.1| putative PAS/PAC sensor protein [Halomonas sp. GFAJ-1]
Length = 145
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 48/72 (66%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQ + D++ + IRDA+++G L NY+KDGT FWN L++TP+ D++ + +I
Sbjct: 59 RFLQNEDRDQDALASIRDALKDGHPSREVLRNYRKDGTMFWNELSITPVYDEADNLMYYI 118
Query: 78 GMQVEVSKYTEG 89
G+Q +V++ E
Sbjct: 119 GVQKDVTERVEA 130
>gi|448492502|ref|ZP_21608893.1| signal-transducing histidine kinase/response regulator [Halorubrum
californiensis DSM 19288]
gi|445691117|gb|ELZ43311.1| signal-transducing histidine kinase/response regulator [Halorubrum
californiensis DSM 19288]
Length = 743
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD V ++ +A+ N + + NY+KDGTPFWN L V P+ D G I+++
Sbjct: 442 RFLQGEDTDPATVARLGEAIDNEEPITVEIRNYRKDGTPFWNELRVAPVYDADGDLIRYL 501
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSK--SLIRYDAR 110
G Q +V+ E + + + L + S++ +D R
Sbjct: 502 GTQRDVTDRKERTQELQHQNDRLEEFASVVSHDLR 536
Score = 35.4 bits (80), Expect = 9.1, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 35/66 (53%)
Query: 20 LQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGM 79
LQ E ++ E + + +G + ++N KDG F T+ P+ D+SG+T F+ +
Sbjct: 319 LQSGEHEQAFYEDLWQTILDGDVWRNEVVNEHKDGERFVIDQTIAPVTDESGETTHFVAV 378
Query: 80 QVEVSK 85
++++
Sbjct: 379 NNDITE 384
>gi|170740287|ref|YP_001768942.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
gi|168194561|gb|ACA16508.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
Length = 812
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 41/65 (63%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQGP TD V +IR AV G+ +LNY++DGT FWN L V P+ D++G+ I F
Sbjct: 75 RLLQGPGTDPQTVARIRAAVAEGREARVAILNYRRDGTSFWNELFVCPVFDEAGRLINFF 134
Query: 78 GMQVE 82
Q++
Sbjct: 135 ASQID 139
>gi|448651252|ref|ZP_21680321.1| HTR-like protein [Haloarcula californiae ATCC 33799]
gi|445770779|gb|EMA21837.1| HTR-like protein [Haloarcula californiae ATCC 33799]
Length = 726
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQG TD V+ +RDA+ G+ L NY+KDGT FWN + + P++DD G + ++
Sbjct: 320 RILQGENTDPEPVDALRDAIDAGEQVSVELRNYRKDGTEFWNRVRIAPVRDDDGTVVNYV 379
Query: 78 GMQVEVSK 85
G Q + ++
Sbjct: 380 GFQQDTTE 387
>gi|380474414|emb|CCF45790.1| Aureochrome1, partial [Colletotrichum higginsianum]
Length = 917
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/67 (47%), Positives = 43/67 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD+ V +++ A+ K +LNYKK+G PFWNLL V P+ +++GK FI
Sbjct: 670 RFLQGQHTDRVPVRRLKTAISERKESVELILNYKKNGDPFWNLLYVAPLYNEAGKLAFFI 729
Query: 78 GMQVEVS 84
G QV S
Sbjct: 730 GGQVNCS 736
>gi|409396613|ref|ZP_11247593.1| PAS/PAC/GGDEF-domain-containing protein [Pseudomonas sp. Chol1]
gi|409118795|gb|EKM95186.1| PAS/PAC/GGDEF-domain-containing protein [Pseudomonas sp. Chol1]
Length = 421
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
+S + +EL+G R LQGP TD++ ++++R +R+G+ + G +NY+KDG P+W
Sbjct: 48 LSGYSAEELVG---QTPRILQGPLTDRDVLDELRQCLRDGRFFHGSTVNYRKDGEPYWVE 104
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKS 103
++PI+D G ++ +Q S+ N L L+ S
Sbjct: 105 WNISPIRDAQGAVTHYVSVQRGFSELVAAQNTSQLLFEALAVS 147
>gi|338996765|ref|ZP_08635475.1| putative PAS/PAC sensor protein [Halomonas sp. TD01]
gi|338766406|gb|EGP21328.1| putative PAS/PAC sensor protein [Halomonas sp. TD01]
Length = 145
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 49/72 (68%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQ + D++ + IR+A++ G+ L NY+KDGT FWN L++TP+ D++ K + +I
Sbjct: 59 RFLQNEDRDQDALTSIREALKEGRPSREVLRNYRKDGTMFWNELSITPVYDEADKLMYYI 118
Query: 78 GMQVEVSKYTEG 89
G+Q +V++ E
Sbjct: 119 GVQKDVTERVEA 130
>gi|242789456|ref|XP_002481363.1| white collar, putative [Talaromyces stipitatus ATCC 10500]
gi|218717951|gb|EED17371.1| white collar, putative [Talaromyces stipitatus ATCC 10500]
Length = 294
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 44/64 (68%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T+K+ +IRD + G+ + L+Y++DG+PF NLL P+ D++GK FI
Sbjct: 161 RFLQGPKTNKHSKRRIRDVIEAGQQHHEVFLDYRRDGSPFMNLLMCAPLCDNNGKVRCFI 220
Query: 78 GMQV 81
G+ V
Sbjct: 221 GVDV 224
>gi|428304763|ref|YP_007141588.1| multi-sensor signal transduction histidine kinase [Crinalium
epipsammum PCC 9333]
gi|428246298|gb|AFZ12078.1| multi-sensor signal transduction histidine kinase [Crinalium
epipsammum PCC 9333]
Length = 811
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 46/71 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
+FLQG +TD VE+IR A+R + L NY+K+GTPFWN L ++P+ D +G FI
Sbjct: 74 KFLQGKDTDLAVVEQIRQALRTKQECQVVLKNYRKNGTPFWNELKISPVCDRNGNLTNFI 133
Query: 78 GMQVEVSKYTE 88
G+Q +++ E
Sbjct: 134 GVQTDITSRIE 144
>gi|218665621|ref|YP_002426126.1| sensory box-containing diguanylate cyclase [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|218517834|gb|ACK78420.1| sensory box-containing diguanylate cyclase, putative
[Acidithiobacillus ferrooxidans ATCC 23270]
gi|451311343|gb|AGF34148.1| sensory box-containing diguanylate cyclase [uncultured bacterium
DX-8J-22]
Length = 1057
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
+FLQ P+TD V +I A+ +SY G +LN + DGT FWN L + P+ +D G FI
Sbjct: 226 KFLQAPQTDAQTVRQIAIALAQEQSYTGDILNQRNDGTLFWNRLHIDPVLNDQGALTGFI 285
Query: 78 GMQVEVSKYTEGVN 91
G+Q ++++ E N
Sbjct: 286 GLQRDITQERENRN 299
>gi|443472907|ref|ZP_21062932.1| diguanylate cyclase/phosphodiesterase [Pseudomonas pseudoalcaligenes
KF707]
gi|442903470|gb|ELS28761.1| diguanylate cyclase/phosphodiesterase [Pseudomonas pseudoalcaligenes
KF707]
Length = 1895
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 45/68 (66%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+ ++ + +IR A+ + L N++KDGTPFWN L + P+ D+ G+ FI
Sbjct: 1238 RFLQGPDREQTGIAEIRRALEEQREVHVVLRNFRKDGTPFWNDLYIAPVPDEHGRITHFI 1297
Query: 78 GMQVEVSK 85
G+Q ++S+
Sbjct: 1298 GVQNDISE 1305
>gi|55380223|ref|YP_138072.1| light- and oxygen-sensing histidine kinase [Haloarcula marismortui
ATCC 43049]
gi|55232948|gb|AAV48366.1| putative 22-domain light- and oxygen-sensing histidine kinase
[Haloarcula marismortui ATCC 43049]
Length = 2306
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/107 (35%), Positives = 65/107 (60%), Gaps = 5/107 (4%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQ + D++ ++++R A+ + + L NY+KDG FWN L+VTPI DD G +I
Sbjct: 1507 RFLQRDDRDQSALDELRKAIASEEPSIVELRNYRKDGEQFWNRLSVTPIYDDVGTLANYI 1566
Query: 78 GMQVEVSKYTEGVNDKALRP-NGLSKSLIRYDARQK--EKALGSITE 121
G+Q +VS E ++ +R +G ++ L+ D + + KAL +++E
Sbjct: 1567 GIQQDVSD--EKTREQRIRALHGTTRELLEADDKDEAVAKALDTLSE 1611
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 47/71 (66%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD +V ++R+A+ + L NY+KDGTP+W L++TP+ ++G ++
Sbjct: 703 RFLQGADTDPEQVARLREAIDADEPVSVELKNYRKDGTPYWARLSITPVTGENGTVTNYV 762
Query: 78 GMQVEVSKYTE 88
G+Q +V++ E
Sbjct: 763 GIQQDVTERRE 773
>gi|209524032|ref|ZP_03272583.1| multi-sensor signal transduction histidine kinase [Arthrospira
maxima CS-328]
gi|209495407|gb|EDZ95711.1| multi-sensor signal transduction histidine kinase [Arthrospira
maxima CS-328]
Length = 1184
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 59/94 (62%), Gaps = 9/94 (9%)
Query: 5 TGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLT 62
T +E+IG C RFLQGPET ++ + IR +++ + L NY+K+G+ FWN L
Sbjct: 383 TKEEVIGQNC-----RFLQGPETHEDAIAMIRQSIKRKQGCKVTLKNYRKNGSCFWNELA 437
Query: 63 VTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALR 96
++P++D GK FIG+Q ++++ + ++ ALR
Sbjct: 438 ISPVRDHRGKLTHFIGIQTDITERKQ--SEDALR 469
>gi|427400762|ref|ZP_18892000.1| PAS domain S-box protein [Massilia timonae CCUG 45783]
gi|425720275|gb|EKU83198.1| PAS domain S-box protein [Massilia timonae CCUG 45783]
Length = 569
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 43/68 (63%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD+ V ++ AV ++ ++NYK DGTPFWN L PI D GK + F
Sbjct: 116 RFLQGPDTDRATVAELHRAVEEQRAVAVDIVNYKADGTPFWNALFFGPIFDQEGKLLYFF 175
Query: 78 GMQVEVSK 85
Q+++++
Sbjct: 176 ASQMDITE 183
>gi|421155954|ref|ZP_15615414.1| sensory box protein [Pseudomonas aeruginosa ATCC 14886]
gi|404519642|gb|EKA30373.1| sensory box protein [Pseudomonas aeruginosa ATCC 14886]
Length = 156
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 46/67 (68%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG E + + IR+A+ +G+ L N++KDGTPFWN L++TP+++++ FI
Sbjct: 54 RFLQGAERQQPGLAAIREAISSGQPCREVLRNFRKDGTPFWNELSITPVRNEADHLTYFI 113
Query: 78 GMQVEVS 84
G+Q +VS
Sbjct: 114 GIQRDVS 120
>gi|323449211|gb|EGB05101.1| hypothetical protein AURANDRAFT_38723 [Aureococcus anophagefferens]
Length = 157
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 41/67 (61%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD V KIR AV G LLNY+ DG+ F+N V P++D G + ++
Sbjct: 91 RFLQGPRTDPRAVAKIRKAVDEGYDTSVCLLNYRIDGSTFFNQFFVAPLRDGQGNVVNYV 150
Query: 78 GMQVEVS 84
G+Q +VS
Sbjct: 151 GVQCQVS 157
>gi|448640838|ref|ZP_21677625.1| HTR-like protein [Haloarcula sinaiiensis ATCC 33800]
gi|445761363|gb|EMA12611.1| HTR-like protein [Haloarcula sinaiiensis ATCC 33800]
Length = 726
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQG TD V+ +RDA+ G+ L NY+KDGT FWN + + P++DD G + ++
Sbjct: 320 RILQGENTDPEPVDALRDAIDAGEQVSVELRNYRKDGTEFWNRVRIAPVRDDDGTVVNYV 379
Query: 78 GMQVEVSK 85
G Q + ++
Sbjct: 380 GFQQDTTE 387
>gi|253574406|ref|ZP_04851747.1| diguanylate cyclase/phosphodiesterase [Paenibacillus sp. oral taxon
786 str. D14]
gi|251846111|gb|EES74118.1| diguanylate cyclase/phosphodiesterase [Paenibacillus sp. oral taxon
786 str. D14]
Length = 575
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ET+K + IR A++ + + NYKKDG+ FWN ++PI D G + FI
Sbjct: 68 RFLQGKETNKEHLAVIRKAIKEIGAATVTIKNYKKDGSTFWNQFVISPILDAEGHLLYFI 127
Query: 78 GMQVEVSKYTE 88
G+Q +V++ E
Sbjct: 128 GLQFDVTREVE 138
>gi|55377011|ref|YP_134861.1| HTR-like protein [Haloarcula marismortui ATCC 43049]
gi|55229736|gb|AAV45155.1| HTR-like protein [Haloarcula marismortui ATCC 43049]
Length = 726
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQG TD V+ +RDA+ G+ L NY+KDGT FWN + + P++DD G + ++
Sbjct: 320 RILQGENTDPEPVDALRDAIDAGEQVSVELRNYRKDGTEFWNRVRIAPVRDDDGTVVNYV 379
Query: 78 GMQVEVSK 85
G Q + ++
Sbjct: 380 GFQQDTTE 387
>gi|319954539|ref|YP_004165806.1| pas/pac sensor signal transduction histidine kinase [Cellulophaga
algicola DSM 14237]
gi|319423199|gb|ADV50308.1| PAS/PAC sensor signal transduction histidine kinase [Cellulophaga
algicola DSM 14237]
Length = 628
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 48/68 (70%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + ++ + +R+A++NGKS + NYKKDGT F+N L +TPI+D SG +I
Sbjct: 182 RFLQGNDKNQECITNMRNAIKNGKSSQAIVRNYKKDGTLFYNDLYITPIRDKSGLITNYI 241
Query: 78 GMQVEVSK 85
G+Q +V++
Sbjct: 242 GIQNDVTE 249
>gi|415963977|ref|ZP_11557939.1| sensory box-containing diguanylate cyclase, putative, partial
[Acidithiobacillus sp. GGI-221]
gi|339832962|gb|EGQ60840.1| sensory box-containing diguanylate cyclase, putative
[Acidithiobacillus sp. GGI-221]
Length = 677
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
+FLQ P+TD V +I A+ +SY G +LN + DGT FWN L + P+ +D G FI
Sbjct: 89 KFLQAPQTDAQTVRQIAIALAQEQSYTGDILNQRNDGTLFWNRLHIDPVLNDQGALTGFI 148
Query: 78 GMQVEVSKYTEGVN 91
G+Q ++++ E N
Sbjct: 149 GLQRDITQERENRN 162
>gi|423065965|ref|ZP_17054755.1| putative two-component sensor histidine kinase [Arthrospira
platensis C1]
gi|406712464|gb|EKD07649.1| putative two-component sensor histidine kinase [Arthrospira
platensis C1]
Length = 1240
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 59/94 (62%), Gaps = 9/94 (9%)
Query: 5 TGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLT 62
T +E+IG C RFLQGPET ++ + IR +++ + L NY+K+G+ FWN L
Sbjct: 383 TKEEVIGQNC-----RFLQGPETHEDAIAMIRQSIKRKQGCKVTLKNYRKNGSCFWNELA 437
Query: 63 VTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALR 96
++P++D GK FIG+Q ++++ + ++ ALR
Sbjct: 438 ISPVRDHRGKLTHFIGIQTDITERKQ--SEDALR 469
>gi|376004225|ref|ZP_09781972.1| putative two-component sensor histidine kinase [Arthrospira sp. PCC
8005]
gi|375327431|emb|CCE17725.1| putative two-component sensor histidine kinase [Arthrospira sp. PCC
8005]
Length = 1240
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 59/94 (62%), Gaps = 9/94 (9%)
Query: 5 TGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLT 62
T +E+IG C RFLQGPET ++ + IR +++ + L NY+K+G+ FWN L
Sbjct: 383 TKEEVIGQNC-----RFLQGPETHEDAIAMIRQSIKRKQGCKVTLKNYRKNGSCFWNELA 437
Query: 63 VTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALR 96
++P++D GK FIG+Q ++++ + ++ ALR
Sbjct: 438 ISPVRDHRGKLTHFIGIQTDITERKQ--SEDALR 469
>gi|339493943|ref|YP_004714236.1| sensory box protein [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
gi|418294832|ref|ZP_12906712.1| sensory box protein [Pseudomonas stutzeri ATCC 14405 = CCUG 16156]
gi|338801315|gb|AEJ05147.1| sensory box protein, putative [Pseudomonas stutzeri ATCC 17588 =
LMG 11199]
gi|379066195|gb|EHY78938.1| sensory box protein [Pseudomonas stutzeri ATCC 14405 = CCUG 16156]
Length = 148
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 51/74 (68%), Gaps = 2/74 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLL-NYKKDGTPFWNLLTVTPIKDDSGKTIKF 76
RFLQG + D+ ++ IR+AV+N + C +++ NY+KDGTPFWN L++TP+ ++ + F
Sbjct: 54 RFLQGEDRDQPALQAIREAVKNNQP-CRQIIRNYRKDGTPFWNELSITPVFNEGDQLTYF 112
Query: 77 IGMQVEVSKYTEGV 90
IG+Q V+ + +
Sbjct: 113 IGIQKNVTAEVDAL 126
>gi|428312366|ref|YP_007123343.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
gi|428253978|gb|AFZ19937.1| PAS domain S-box [Microcoleus sp. PCC 7113]
Length = 621
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 67/116 (57%), Gaps = 12/116 (10%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +T + ++++ A+ G+ L NY+KDGT FWN + P++D++G FI
Sbjct: 231 RFLQGTDTKQPALDELHRAIAKGQGTQVVLRNYRKDGTLFWNEFCLNPVRDEAGHLTHFI 290
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRSQSHI 133
G+Q +++++ + + L + AR+KEKA ++ + + +KR+Q+ +
Sbjct: 291 GVQTDITEHKKR-----------EEELQQAKAREKEKA-QALEQTLGELKRTQTQL 334
>gi|257051404|ref|YP_003129237.1| bacterio-opsin activator [Halorhabdus utahensis DSM 12940]
gi|256690167|gb|ACV10504.1| putative PAS/PAC sensor protein [Halorhabdus utahensis DSM 12940]
Length = 680
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/106 (32%), Positives = 60/106 (56%), Gaps = 5/106 (4%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD ++R+AV + ++ L NY+ DG+ FWN L ++PI+DD G F+
Sbjct: 200 RFLQGEGTDAETTLELREAVMDEQAAAVELRNYRADGSTFWNNLEISPIRDDDGTVTNFV 259
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVI 123
G Q ++++ E + A++ + +R + E +G +TE++
Sbjct: 260 GFQQDITERKEA--EAAIKR---ERETLRRLLERVEGLVGDVTEIL 300
>gi|149186049|ref|ZP_01864363.1| sensory box histidine kinase [Erythrobacter sp. SD-21]
gi|148830080|gb|EDL48517.1| sensory box histidine kinase [Erythrobacter sp. SD-21]
Length = 359
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 44/67 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD+ ++ KIR+A+ + LLNY+KDG+ F+N L + PI D G+ F
Sbjct: 86 RFLQGPDTDQRQIAKIREAIAAEEVVVVELLNYRKDGSTFYNTLHLGPIYDAEGRLTYFF 145
Query: 78 GMQVEVS 84
G Q +V+
Sbjct: 146 GSQWDVT 152
>gi|339487120|ref|YP_004701648.1| putative PAS/PAC sensor protein [Pseudomonas putida S16]
gi|338837963|gb|AEJ12768.1| putative PAS/PAC sensor protein [Pseudomonas putida S16]
Length = 148
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 46/67 (68%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + D+ + IR+A+R G C L NY+KDG+ FWN L+VTP+ +++ + +I
Sbjct: 54 RFLQGDDHDQAGLANIREAIRGGLPCCQVLRNYRKDGSLFWNELSVTPVYNEADQLTYYI 113
Query: 78 GMQVEVS 84
G+Q +V+
Sbjct: 114 GIQRDVT 120
>gi|421528687|ref|ZP_15975246.1| putative PAS/PAC sensor protein [Pseudomonas putida S11]
gi|402213830|gb|EJT85168.1| putative PAS/PAC sensor protein [Pseudomonas putida S11]
Length = 148
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 46/67 (68%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + D+ + IR+A+R G C L NY+KDG+ FWN L+VTP+ +++ + +I
Sbjct: 54 RFLQGDDHDQAGLANIREAIRGGLPCCQVLRNYRKDGSLFWNELSVTPVYNEADQLTYYI 113
Query: 78 GMQVEVS 84
G+Q +V+
Sbjct: 114 GIQRDVT 120
>gi|452987898|gb|EME87653.1| hypothetical protein MYCFIDRAFT_96279, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 571
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 42/67 (62%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP T+ + V ++ A G+ + LNY++DG+PF NLL + P+ D G FI
Sbjct: 240 RFLQGPRTNPHSVRRLAMATAAGREHTEVFLNYRRDGSPFMNLLMIAPLLDSRGNVRYFI 299
Query: 78 GMQVEVS 84
G QV+VS
Sbjct: 300 GAQVDVS 306
>gi|338998134|ref|ZP_08636813.1| PAS/PAC and GAF sensor-containing diguanylate
cyclase/phosphodiesterase [Halomonas sp. TD01]
gi|338765029|gb|EGP19982.1| PAS/PAC and GAF sensor-containing diguanylate
cyclase/phosphodiesterase [Halomonas sp. TD01]
Length = 863
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 41/68 (60%)
Query: 17 SRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKF 76
SRFL GPET ++ IR + + LLNY+KDG PFWN L V+P+ D SG F
Sbjct: 347 SRFLHGPETAPEAIDAIRAGMCEQRDVSITLLNYRKDGEPFWNHLVVSPVFDQSGTCSHF 406
Query: 77 IGMQVEVS 84
IG+ +++
Sbjct: 407 IGIHQDIT 414
>gi|119493187|ref|ZP_01624062.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
domains) with PAS/PAC sensors [Lyngbya sp. PCC 8106]
gi|119452752|gb|EAW33929.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
domains) with PAS/PAC sensors [Lyngbya sp. PCC 8106]
Length = 1090
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD + VE++R A+ G+ + NY+KDG FWN L + P+ +D G FI
Sbjct: 440 RFLQGPQTDSSLVERLRTALLQGRECRVVIQNYRKDGRLFWNDLQIAPVFNDRGHLTHFI 499
Query: 78 GMQVEVSKYTEG 89
G+Q ++++ E
Sbjct: 500 GVQNDITERYEA 511
>gi|352106315|ref|ZP_08961366.1| putative PAS/PAC sensor protein [Halomonas sp. HAL1]
gi|350597963|gb|EHA14088.1| putative PAS/PAC sensor protein [Halomonas sp. HAL1]
Length = 144
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 49/72 (68%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQ + D++ + IRDA+++G L NY+KDGT FWN L++TP+ D++ + + +I
Sbjct: 59 RFLQNEDRDQDALVSIRDALKDGSPSREVLRNYRKDGTMFWNELSITPVYDEADELMYYI 118
Query: 78 GMQVEVSKYTEG 89
G+Q +V++ E
Sbjct: 119 GVQKDVTERVEA 130
>gi|299821472|ref|ZP_07053360.1| blue-light photoreceptor [Listeria grayi DSM 20601]
gi|299817137|gb|EFI84373.1| blue-light photoreceptor [Listeria grayi DSM 20601]
Length = 257
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD+ E+ KI AV+N +S L NY K+GT F+N LT+ PI D +G F+
Sbjct: 60 RFLQGPDTDQAEIAKISAAVKNRRSVRAFLKNYHKNGTYFFNELTIDPIVDANGHPY-FV 118
Query: 78 GMQVEVSK 85
G+Q +V++
Sbjct: 119 GIQKDVTR 126
>gi|428204021|ref|YP_007082610.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
protein [Pleurocapsa sp. PCC 7327]
gi|427981453|gb|AFY79053.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
protein [Pleurocapsa sp. PCC 7327]
Length = 479
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 46/69 (66%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + + +E IR A+R K + NY+KDGT FWN ++++PI+D++GK +I
Sbjct: 212 RFLQGEDRKQPALEIIRQAIRQQKECRVTVRNYRKDGTLFWNDISISPIRDEAGKVTHYI 271
Query: 78 GMQVEVSKY 86
+Q +++Y
Sbjct: 272 AVQTNITEY 280
>gi|393769601|ref|ZP_10358123.1| putative PAS/PAC sensor protein [Methylobacterium sp. GXF4]
gi|392725072|gb|EIZ82415.1| putative PAS/PAC sensor protein [Methylobacterium sp. GXF4]
Length = 164
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 45/69 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP T+ V+++R A+R G LLNY+KDG+ F N L V P++D +G + +
Sbjct: 72 RFLQGPGTEAAAVDRLRAAIRQGVDIKIDLLNYRKDGSVFQNALYVGPVRDATGTVVYYF 131
Query: 78 GMQVEVSKY 86
Q++VS++
Sbjct: 132 ASQIDVSEH 140
>gi|374622923|ref|ZP_09695442.1| PAS/PAC/GGDEF-domain-containing protein [Ectothiorhodospira sp.
PHS-1]
gi|373942043|gb|EHQ52588.1| PAS/PAC/GGDEF-domain-containing protein [Ectothiorhodospira sp.
PHS-1]
Length = 420
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ T +ELIG R LQGP TD + +E++R ++ G+ + G ++NY+KDG+ ++
Sbjct: 45 MTGYTWQELIGKT---PRILQGPRTDLDTIERLRRCLKAGEFFIGNMVNYRKDGSCYYVE 101
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKS 103
++PI+DD G F+ +Q ++++ ++ L N L +
Sbjct: 102 WNISPIRDDKGLITHFVSVQRDLTEKVRAEYERNLMANALEAN 144
>gi|448440113|ref|ZP_21588361.1| histidine kinase [Halorubrum saccharovorum DSM 1137]
gi|445690630|gb|ELZ42840.1| histidine kinase [Halorubrum saccharovorum DSM 1137]
Length = 475
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 70/131 (53%), Gaps = 11/131 (8%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQG +TD IR+A+ + + +LNY+ +G FWN LTV PI D++G I+F+
Sbjct: 187 RLLQGEDTDPATTAAIREAIDDERPVSVDILNYRANGKKFWNQLTVAPIHDETGDVIRFV 246
Query: 78 GMQVEVSKYTEGVNDKALRPNGLS--KSLIRYDARQKEKALGSITEVIQTVKRSQSHIRA 135
G Q +++ D+ +R L ++ ++ R K + TE++++ + ++
Sbjct: 247 GFQTDIT-------DRKIRERRLEVMSRVLNHNLRNKMNLIEGYTELLRSDPDEEQRRKS 299
Query: 136 LSL--DTTNKL 144
L + +TT+ L
Sbjct: 300 LDVISETTDDL 310
>gi|168701749|ref|ZP_02734026.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
2246]
Length = 1178
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/67 (49%), Positives = 46/67 (68%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD + V +R A+R+G++ LLNY+KDG PFWN LTV P++D +G F+
Sbjct: 739 RFLQGKGTDPSAVAAVRAALRDGRAALVELLNYRKDGKPFWNALTVAPVRDGAGALTHFV 798
Query: 78 GMQVEVS 84
+Q +VS
Sbjct: 799 AIQTDVS 805
>gi|448320158|ref|ZP_21509646.1| HTR-like protein [Natronococcus amylolyticus DSM 10524]
gi|445606564|gb|ELY60468.1| HTR-like protein [Natronococcus amylolyticus DSM 10524]
Length = 634
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD VE++R A+ G+S LLNY++DG PFWN +T+ P+ D + F+
Sbjct: 73 RFLQGERTDPEPVERMRAAIDAGESVTVELLNYRRDGDPFWNRVTIAPLF-DGNEVANFV 131
Query: 78 GMQVEVS 84
G+Q +V+
Sbjct: 132 GIQQDVT 138
>gi|284166481|ref|YP_003404760.1| multi-sensor signal transduction histidine kinase [Haloterrigena
turkmenica DSM 5511]
gi|284016136|gb|ADB62087.1| multi-sensor signal transduction histidine kinase [Haloterrigena
turkmenica DSM 5511]
Length = 654
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 40/110 (36%), Positives = 60/110 (54%), Gaps = 6/110 (5%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG T V+ +R A+ +S L NY+KDG+ FWN +TV P+ D++G ++
Sbjct: 367 RFLQGERTATEPVDDLRAAIDAERSNTVELRNYRKDGSEFWNRVTVAPVADENGDVTNYV 426
Query: 78 GMQVEVSKYTEG-----VNDKALRPNGLSK-SLIRYDARQKEKALGSITE 121
G Q +V++ E V + LR N ++ S+IR A Q + G TE
Sbjct: 427 GFQQDVTERKEATRQLRVLHRVLRHNLANQMSIIRGTAEQLAERSGGDTE 476
>gi|448747415|ref|ZP_21729075.1| PAS domain-containing protein [Halomonas titanicae BH1]
gi|445565107|gb|ELY21220.1| PAS domain-containing protein [Halomonas titanicae BH1]
Length = 171
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 48/71 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQ + D++ + IRDA+ G+ L NY+KDGT FWN L++TP+ D++ K + +I
Sbjct: 86 RFLQNEDRDQDALVAIRDALNEGRPSREVLRNYRKDGTMFWNELSITPVYDEADKLMYYI 145
Query: 78 GMQVEVSKYTE 88
G+Q +V++ E
Sbjct: 146 GVQKDVTERVE 156
>gi|209547274|ref|YP_002279192.1| hypothetical protein Rleg2_5263 [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209538518|gb|ACI58452.1| signal transduction histidine kinase [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 345
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQ P T V +IR ++ + +LNYKK G PFWN L ++PI D G+ + F
Sbjct: 76 RFLQRPATSPIAVAEIRASIAEERDVSVEILNYKKSGEPFWNRLHLSPIHGDDGRILYFF 135
Query: 78 GMQVEVSKY 86
G Q+++++Y
Sbjct: 136 GSQIDMTEY 144
>gi|448397476|ref|ZP_21569509.1| bacterio-opsin activator [Haloterrigena limicola JCM 13563]
gi|445672575|gb|ELZ25146.1| bacterio-opsin activator [Haloterrigena limicola JCM 13563]
Length = 633
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 46/72 (63%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG E+D+N + ++ A+ + + NY+KDGT FWN +T+ P++D++G+ ++
Sbjct: 180 RFLQGEESDENAIAEMAAAIDEDRPVTVEIKNYRKDGTEFWNEVTIAPVRDEAGRVTHYV 239
Query: 78 GMQVEVSKYTEG 89
G Q +++ E
Sbjct: 240 GFQNDITARKEA 251
>gi|428303722|ref|YP_007140547.1| multi-sensor signal transduction histidine kinase [Crinalium
epipsammum PCC 9333]
gi|428245257|gb|AFZ11037.1| multi-sensor signal transduction histidine kinase [Crinalium
epipsammum PCC 9333]
Length = 973
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 5 TGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVT 64
T ++++G C LQG ETD +E IR+A+ + LLNY+KDG PFWN L ++
Sbjct: 104 TAQDILGENCRC---LQGKETDPQAIELIREAISKKEPVQVTLLNYRKDGQPFWNELKIS 160
Query: 65 PIKDDSGKTIKFIGMQVEVSK 85
P+ D + FIG+Q ++++
Sbjct: 161 PVFSDQENLLYFIGIQTDITE 181
>gi|289434063|ref|YP_003463935.1| blue-light photoreceptor [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289170307|emb|CBH26847.1| blue-light photoreceptor, putative [Listeria seeligeri serovar 1/2b
str. SLCC3954]
Length = 253
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
FLQG +TD+ EV+K+RDAV N + L NY+KDG+ F N LT+ PI DD+ + F+
Sbjct: 57 HFLQGEDTDQEEVKKVRDAVNNKTTTTALLKNYRKDGSSFMNELTIEPIYDDNDH-LYFV 115
Query: 78 GMQVEVS 84
G+Q +++
Sbjct: 116 GIQKDIT 122
>gi|346320335|gb|EGX89936.1| PAS-like protein [Cordyceps militaris CM01]
Length = 852
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 43/67 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP T+ V++IR+ + G + LNY++DGTPF NL+ + P+ D G FI
Sbjct: 280 RFLQGPCTNPFSVKRIREKLEAGIEHYETFLNYRRDGTPFMNLVMLAPLYDSRGTIRYFI 339
Query: 78 GMQVEVS 84
G QV+VS
Sbjct: 340 GAQVDVS 346
>gi|392545118|ref|ZP_10292255.1| sensor protein [Pseudoalteromonas rubra ATCC 29570]
Length = 1107
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 75/132 (56%), Gaps = 7/132 (5%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
+FLQG ET V + DA++ K++ +LNY K G PFWN L + P+ +D G+ + ++
Sbjct: 480 KFLQGEETAPEVVANMVDAIKERKAHRTVILNYTKLGKPFWNNLHIAPVSNDQGELVAYV 539
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRSQSHIRALS 137
G+ ++S+ E ++AL +KS +R K + L S++ I+T + L+
Sbjct: 540 GIIQDISE--EIAQERALAE---AKSQAEQASRAKSEFLASMSHEIRTPMNGV--LGMLN 592
Query: 138 LDTTNKLEEKRS 149
L +N+L+E+++
Sbjct: 593 LLLSNELDEQQT 604
>gi|389864875|ref|YP_006367116.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(S) [Modestobacter marinus]
gi|388487079|emb|CCH88635.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(S) [Modestobacter marinus]
Length = 750
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 5/82 (6%)
Query: 4 PTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYK-KDGTPFWNLLT 62
P G+ L C RFLQGP+TD V ++R A+R G + LLN++ + P+WN +
Sbjct: 487 PAGRALGRNC----RFLQGPDTDPGVVARMRQAIREGAEFRATLLNHRGPEREPWWNEIH 542
Query: 63 VTPIKDDSGKTIKFIGMQVEVS 84
+ P+ D SG+ +++IG+Q +V+
Sbjct: 543 LAPVLDSSGQLVQYIGVQTDVT 564
>gi|339502812|ref|YP_004690232.1| ATP-binding sensor protein [Roseobacter litoralis Och 149]
gi|338756805|gb|AEI93269.1| putative ATP-binding sensor protein [Roseobacter litoralis Och 149]
Length = 350
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 43/66 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TDK V+ +R A+ ++ +LNYK +G PF N L V+PI D GKT FI
Sbjct: 70 RFLQGEDTDKAAVDVLRHAIELDQNVTVDILNYKANGAPFMNRLVVSPIVDSQGKTEYFI 129
Query: 78 GMQVEV 83
G+Q E+
Sbjct: 130 GIQKEL 135
>gi|315126040|ref|YP_004068043.1| sensor protein [Pseudoalteromonas sp. SM9913]
gi|315014554|gb|ADT67892.1| putative sensor protein [Pseudoalteromonas sp. SM9913]
Length = 1101
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 53/79 (67%), Gaps = 3/79 (3%)
Query: 7 KELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI 66
+E++G CS LQGP TDKN ++ I +A++ K+ +LNYKKDGT FWN L ++P+
Sbjct: 473 EEMLGIN--CS-LLQGPNTDKNAIDIITNAIKTLKTQRIEILNYKKDGTEFWNSLQISPV 529
Query: 67 KDDSGKTIKFIGMQVEVSK 85
++ + ++G+Q ++++
Sbjct: 530 FNEQQQLTAYVGIQQDITE 548
>gi|209963693|ref|YP_002296608.1| multi-sensor hybrid histidine kinase [Rhodospirillum centenum SW]
gi|209957159|gb|ACI97795.1| multi-sensor hybrid histidine kinase, putative [Rhodospirillum
centenum SW]
Length = 368
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 42/67 (62%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFL GP TD V + +A+R G RLLNY+KDG+ F N L + PI D++G +I
Sbjct: 54 RFLHGPGTDDAAVGVLHEAIRTGSRADVRLLNYRKDGSTFLNHLVLAPIHDETGTLSAYI 113
Query: 78 GMQVEVS 84
G+Q +V+
Sbjct: 114 GLQSDVT 120
>gi|188580069|ref|YP_001923514.1| signal transduction histidine kinase [Methylobacterium populi
BJ001]
gi|179343567|gb|ACB78979.1| signal transduction histidine kinase [Methylobacterium populi
BJ001]
Length = 488
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 42/67 (62%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD +V +IRDA+ LLN+KK+G FWN L ++P+ DD G+ F
Sbjct: 71 RFLQGPETDPRDVGRIRDAIERRVPIEIELLNHKKNGEVFWNRLLISPVFDDEGRLTYFF 130
Query: 78 GMQVEVS 84
Q +V+
Sbjct: 131 ASQFDVT 137
>gi|119952737|ref|YP_950384.1| sensory box protein [Arthrobacter aurescens TC1]
gi|119951867|gb|ABM10776.1| Sensory Box Protein [Arthrobacter aurescens TC1]
Length = 727
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 45/67 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQGP +D + +R + G+++ +LNY+K+GTPFWN LTV+P++D +G F+
Sbjct: 88 RVLQGPGSDPETIAMMRTVLGRGETFRCEILNYRKNGTPFWNGLTVSPLRDAAGVITHFV 147
Query: 78 GMQVEVS 84
+Q +V+
Sbjct: 148 SVQRDVT 154
>gi|448658338|ref|ZP_21682771.1| PAS/PAC sensor signal transduction histidine kinase [Haloarcula
californiae ATCC 33799]
gi|445761732|gb|EMA12978.1| PAS/PAC sensor signal transduction histidine kinase [Haloarcula
californiae ATCC 33799]
Length = 833
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 17 SRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKF 76
SRFLQG TD + V ++R+A+ + L NY+KDGT FWN +T+ P+ D +G +
Sbjct: 303 SRFLQGENTDPSPVAEMREAIDAEEPVTVELQNYRKDGTEFWNRVTIAPVTDGTGAVTNY 362
Query: 77 IGMQVEVSKYTE 88
IG Q ++++ E
Sbjct: 363 IGFQEDMTERVE 374
>gi|448620191|ref|ZP_21667539.1| HTR-like protein [Haloferax denitrificans ATCC 35960]
gi|445756979|gb|EMA08335.1| HTR-like protein [Haloferax denitrificans ATCC 35960]
Length = 639
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 43/67 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD+ + ++R+AV + + LLNY+KDGT FWN + V PI DD G F+
Sbjct: 206 RFLQGEATDEASIAELREAVEDREPVTTELLNYRKDGTEFWNRVRVAPIFDDDGGIDFFV 265
Query: 78 GMQVEVS 84
G Q +++
Sbjct: 266 GFQDDIT 272
>gi|188583311|ref|YP_001926756.1| multi-sensor hybrid histidine kinase [Methylobacterium populi
BJ001]
gi|418057848|ref|ZP_12695833.1| multi-sensor hybrid histidine kinase [Methylobacterium extorquens
DSM 13060]
gi|179346809|gb|ACB82221.1| multi-sensor hybrid histidine kinase [Methylobacterium populi
BJ001]
gi|373568664|gb|EHP94608.1| multi-sensor hybrid histidine kinase [Methylobacterium extorquens
DSM 13060]
Length = 888
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 41/67 (61%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD V IR+A+ +S + N+KKDGTPFWN L + P+ D G F
Sbjct: 85 RFLQGPETDPETVRLIREAIVAPRSIEIDIRNHKKDGTPFWNRLLLAPVNDAGGDLAYFF 144
Query: 78 GMQVEVS 84
Q++V+
Sbjct: 145 ASQLDVT 151
>gi|302846732|ref|XP_002954902.1| hypothetical protein VOLCADRAFT_65257 [Volvox carteri f.
nagariensis]
gi|218218151|gb|ACK76426.1| smallest phototropin-like protein [synthetic construct]
gi|300259877|gb|EFJ44101.1| hypothetical protein VOLCADRAFT_65257 [Volvox carteri f.
nagariensis]
Length = 133
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 53/77 (68%), Gaps = 4/77 (5%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDS-GKTIKF 76
RFLQG TD V+++++A++ G++ +LLNYKK+G PF N L++TPI D + G+ +
Sbjct: 44 RFLQGEGTDGQPVQELKEAIKQGRACVVQLLNYKKNGDPFVNYLSLTPIYDTATGRLTHY 103
Query: 77 IGMQVEVSKYTEGVNDK 93
+G+Q ++ TE VN K
Sbjct: 104 VGVQSDI---TELVNHK 117
>gi|448607640|ref|ZP_21659593.1| HTR-like protein [Haloferax sulfurifontis ATCC BAA-897]
gi|445737577|gb|ELZ89109.1| HTR-like protein [Haloferax sulfurifontis ATCC BAA-897]
Length = 640
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 41/67 (61%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD+ V ++R AV + LLNY+KDGT FWN + V PI DD G F+
Sbjct: 207 RFLQGERTDEAAVAELRSAVEERRPVTTELLNYRKDGTEFWNRVRVAPIFDDDGAVEFFV 266
Query: 78 GMQVEVS 84
G Q +++
Sbjct: 267 GFQDDIT 273
>gi|76803395|ref|YP_327664.1| signal-transducing histidine kinase [Natronomonas pharaonis DSM
2160]
gi|76559210|emb|CAI50812.1| sensor box histidine kinase [Natronomonas pharaonis DSM 2160]
Length = 596
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 45/68 (66%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG T + ++R A+ G++ L NY+KDGT FWN +TV+P+K+ +G+ +I
Sbjct: 179 RFLQGEATRDEPIAQLRAAIERGETATVELRNYRKDGTMFWNRVTVSPLKNHNGEVTHYI 238
Query: 78 GMQVEVSK 85
G Q ++S+
Sbjct: 239 GFQEDISE 246
>gi|153010973|ref|YP_001372187.1| signal transduction histidine kinase [Ochrobactrum anthropi ATCC
49188]
gi|221272051|sp|A6X554.1|LOVHK_OCHA4 RecName: Full=Blue-light-activated histidine kinase
gi|151562861|gb|ABS16358.1| signal transduction histidine kinase [Ochrobactrum anthropi ATCC
49188]
Length = 491
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 43/67 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD VE I A+ +S +LNYKK G PFWN L ++P+K ++G+ F+
Sbjct: 70 RFLQGPGTDPKHVEIIHSALEAEQSVEIDILNYKKSGEPFWNRLHISPVKTENGELHHFV 129
Query: 78 GMQVEVS 84
Q++V+
Sbjct: 130 SSQLDVT 136
>gi|448407059|ref|ZP_21573486.1| PAS sensor protein [Halosimplex carlsbadense 2-9-1]
gi|445676272|gb|ELZ28795.1| PAS sensor protein [Halosimplex carlsbadense 2-9-1]
Length = 1794
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 48/84 (57%)
Query: 5 TGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVT 64
TG E C RFLQG +TD+ V ++R AV + L NY+ DGT FWN + V
Sbjct: 136 TGYEESECLGRNCRFLQGEDTDEEAVARLRRAVDDEAETTVELRNYRADGTEFWNRVRVA 195
Query: 65 PIKDDSGKTIKFIGMQVEVSKYTE 88
P+++D G+ ++G Q +V++ E
Sbjct: 196 PVENDEGEVTHYVGFQEDVTERVE 219
>gi|422294611|gb|EKU21911.1| hypothetical protein NGA_0015702 [Nannochloropsis gaditana CCMP526]
Length = 228
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD V+KIR A+ +G LLNY+ DG+ FWN + ++ G + ++
Sbjct: 138 RFLQGPDTDPAAVDKIRRAIEDGTDGSVCLLNYRADGSTFWNQFFIAALRGADGNIVNYV 197
Query: 78 GMQVEVSK 85
G+Q +VS+
Sbjct: 198 GVQCKVSE 205
>gi|384246421|gb|EIE19911.1| hypothetical protein COCSUDRAFT_19032 [Coccomyxa subellipsoidea
C-169]
Length = 319
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 41/61 (67%), Gaps = 2/61 (3%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGK--TIK 75
RFLQGP T+ +V+++RD + G +LLNYK DGTPFWN L VT +++ GK TI
Sbjct: 257 RFLQGPGTNPEDVQRLRDGIAAGGPVTVKLLNYKYDGTPFWNHLHVTSVRNACGKVGTIF 316
Query: 76 F 76
F
Sbjct: 317 F 317
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFL GP+T + +V +IR A++ ++ + NYKK G FWN + PI +D+G +I
Sbjct: 50 RFLHGPDTSRQKVMEIRSAIQEERAAQVCIKNYKKSGESFWNHFYLEPIFEDAGVVEYYI 109
Query: 78 G 78
G
Sbjct: 110 G 110
>gi|264678991|ref|YP_003278898.1| PAS/PAC sensor-containing diguanylate cyclase [Comamonas
testosteroni CNB-2]
gi|262209504|gb|ACY33602.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni
CNB-2]
Length = 458
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 3/103 (2%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ +EL+G R LQGPETD+ +E++R + G+ + G +NY+KDGTP+
Sbjct: 57 MTGYATEELLG---RSPRMLQGPETDQQVIEQLRQCLAEGRFFQGSAVNYRKDGTPYHVS 113
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKS 103
++ ++D +GK F+ +Q +V++ E + L L+ +
Sbjct: 114 WNISAVRDVNGKITHFVSVQQDVTRQVESERQRDLMIQALNSA 156
>gi|347548205|ref|YP_004854533.1| hypothetical protein LIV_0732 [Listeria ivanovii subsp. ivanovii
PAM 55]
gi|346981276|emb|CBW85213.1| Hypothetical protein of unknown function [Listeria ivanovii subsp.
ivanovii PAM 55]
Length = 253
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
FLQG +TDK+EVEKIR AV N + L NY+K+G+ F N LT+ PI DD+ + F+
Sbjct: 57 HFLQGEDTDKDEVEKIRYAVHNKTTANALLKNYRKNGSSFMNELTIEPIYDDNNH-LYFV 115
Query: 78 GMQVEVS 84
G+Q +++
Sbjct: 116 GIQKDIT 122
>gi|212558793|gb|ACJ31247.1| RscS [Shewanella piezotolerans WP3]
Length = 934
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 63/108 (58%), Gaps = 9/108 (8%)
Query: 20 LQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGM 79
LQG ET+K +V+KI A++ GKS ++NY KDGTP+W +T++ + D G FI +
Sbjct: 324 LQGQETEKGDVDKISRAIKAGKSIASEVVNYHKDGTPYWVDMTISAVTDSDGDISNFIAV 383
Query: 80 QVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKA--LGSITEVIQT 125
+ + + + +D L+K++I+ D K K+ L +++ ++T
Sbjct: 384 ERDTTARKQMQDD-------LAKAVIKADISNKAKSTFLATMSHELRT 424
>gi|404317909|ref|ZP_10965842.1| signal transduction histidine kinase [Ochrobactrum anthropi
CTS-325]
Length = 480
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 43/67 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD VE I A+ +S +LNYKK G PFWN L ++P+K ++G+ F+
Sbjct: 59 RFLQGPGTDPKHVEIIHSALEAEQSVEIDILNYKKSGEPFWNRLHISPVKTENGELHHFV 118
Query: 78 GMQVEVS 84
Q++V+
Sbjct: 119 SSQLDVT 125
>gi|428210407|ref|YP_007094760.1| multi-sensor signal transduction histidine kinase
[Chroococcidiopsis thermalis PCC 7203]
gi|428012328|gb|AFY90891.1| multi-sensor signal transduction histidine kinase
[Chroococcidiopsis thermalis PCC 7203]
Length = 1046
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 54/87 (62%), Gaps = 6/87 (6%)
Query: 1 MSDPTG---KELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPF 57
+D TG +E++G RFLQG +TDK +++IRDA++ K L+NY KDG+ F
Sbjct: 304 FTDLTGYTCEEVVG---RSPRFLQGAKTDKAALKRIRDALQAKKPVQEELINYCKDGSEF 360
Query: 58 WNLLTVTPIKDDSGKTIKFIGMQVEVS 84
W +++TPI D +G+ F+ +Q +S
Sbjct: 361 WVEISITPIADAAGQYTHFVAIQRNIS 387
>gi|126657235|ref|ZP_01728401.1| regulatory components of sensory transduction system [Cyanothece
sp. CCY0110]
gi|126621506|gb|EAZ92217.1| regulatory components of sensory transduction system [Cyanothece
sp. CCY0110]
Length = 483
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 49/67 (73%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + + ++E+IR + +G++ L NY+KDG+ FWN L+++PIKD+S K I ++
Sbjct: 213 RFLQGSDHKQPQLEQIRHCLYHGENCHITLRNYRKDGSLFWNELSLSPIKDESDKIIYYV 272
Query: 78 GMQVEVS 84
G+Q +V+
Sbjct: 273 GVQTDVT 279
>gi|254559559|ref|YP_003066654.1| sensory transduction histidine kinase [Methylobacterium extorquens
DM4]
gi|254266837|emb|CAX22636.1| putative SENSORY TRANSDUCTION HISTIDINE KINASE of the HWE family
[Methylobacterium extorquens DM4]
Length = 488
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/67 (47%), Positives = 41/67 (61%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD +V +IRDAV LLN+KK G FWN L ++P+ DD G+ F
Sbjct: 71 RFLQGPETDPRDVARIRDAVERRVPVEIDLLNHKKSGEVFWNRLLISPVFDDEGQLTYFF 130
Query: 78 GMQVEVS 84
Q +V+
Sbjct: 131 ASQFDVT 137
>gi|240137379|ref|YP_002961850.1| sensory transduction histidine kinase of the HWE family
[Methylobacterium extorquens AM1]
gi|418059067|ref|ZP_12697026.1| signal transduction histidine kinase [Methylobacterium extorquens
DSM 13060]
gi|240007347|gb|ACS38573.1| putative sensory transduction histidine kinase of the HWE family
[Methylobacterium extorquens AM1]
gi|373567409|gb|EHP93379.1| signal transduction histidine kinase [Methylobacterium extorquens
DSM 13060]
Length = 488
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/67 (47%), Positives = 41/67 (61%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD +V +IRDAV LLN+KK G FWN L ++P+ DD G+ F
Sbjct: 71 RFLQGPETDPRDVARIRDAVERRVPVEIDLLNHKKSGEVFWNRLLISPVFDDEGQLTYFF 130
Query: 78 GMQVEVS 84
Q +V+
Sbjct: 131 ASQFDVT 137
>gi|163850308|ref|YP_001638351.1| PAS sensor protein [Methylobacterium extorquens PA1]
gi|163661913|gb|ABY29280.1| PAS sensor protein [Methylobacterium extorquens PA1]
Length = 488
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/67 (47%), Positives = 41/67 (61%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD +V +IRDAV LLN+KK G FWN L ++P+ DD G+ F
Sbjct: 71 RFLQGPETDPRDVARIRDAVERRVPVEIDLLNHKKSGEVFWNRLLISPVFDDEGQLTYFF 130
Query: 78 GMQVEVS 84
Q +V+
Sbjct: 131 ASQFDVT 137
>gi|428215254|ref|YP_007088398.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
protein [Oscillatoria acuminata PCC 6304]
gi|428003635|gb|AFY84478.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing
protein [Oscillatoria acuminata PCC 6304]
Length = 1288
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 48/67 (71%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + + ++++R+A+RNG+ L NY+KDGT FWN L+++P++++ G +I
Sbjct: 771 RFLQGRDRHQPALQELRNAIRNGQDCKVTLRNYRKDGTLFWNELSLSPVENERGAITHYI 830
Query: 78 GMQVEVS 84
G+Q ++S
Sbjct: 831 GVQTDIS 837
>gi|218528865|ref|YP_002419681.1| signal transduction histidine kinase [Methylobacterium extorquens
CM4]
gi|218521168|gb|ACK81753.1| signal transduction histidine kinase [Methylobacterium extorquens
CM4]
Length = 488
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/67 (47%), Positives = 41/67 (61%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD +V +IRDAV LLN+KK G FWN L ++P+ DD G+ F
Sbjct: 71 RFLQGPETDPRDVARIRDAVERRVPVEIDLLNHKKSGEVFWNRLLISPVFDDEGQLTYFF 130
Query: 78 GMQVEVS 84
Q +V+
Sbjct: 131 ASQFDVT 137
>gi|399066184|ref|ZP_10748269.1| PAS domain S-box [Novosphingobium sp. AP12]
gi|398028504|gb|EJL22012.1| PAS domain S-box [Novosphingobium sp. AP12]
Length = 470
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TDK++V ++R+A+ + LLNY+K+GT FWN L V+P+ D G + +
Sbjct: 39 RFLQGPRTDKSQVARMREAITSRVPIELDLLNYRKNGTHFWNRLLVSPVFADDGNLLYYF 98
Query: 78 GMQVEVS 84
Q +V+
Sbjct: 99 ASQFDVT 105
>gi|85373778|ref|YP_457840.1| sensor histidine kinase [Erythrobacter litoralis HTCC2594]
gi|84786861|gb|ABC63043.1| sensor histidine kinase [Erythrobacter litoralis HTCC2594]
Length = 225
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 45/83 (54%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
+D TG C RFL G T+ +KIR VR K +LNYKKDGTPF N
Sbjct: 62 FTDLTGYSEEECVGRNCRFLAGSGTEPWLTDKIRQGVREHKPVLVEILNYKKDGTPFRNA 121
Query: 61 LTVTPIKDDSGKTIKFIGMQVEV 83
+ V PI DD + + F+G QVEV
Sbjct: 122 VLVAPIYDDDDELLYFLGSQVEV 144
>gi|18395411|ref|NP_565288.1| protein TWIN LOV 1 [Arabidopsis thaliana]
gi|75099072|sp|O64511.2|TLOV1_ARATH RecName: Full=Protein TWIN LOV 1
gi|15010682|gb|AAK74000.1| At2g02710/T20F6.15 [Arabidopsis thaliana]
gi|16323302|gb|AAL15406.1| At2g02710/T20F6.15 [Arabidopsis thaliana]
gi|20196957|gb|AAC05351.2| putative receptor-like protein kinase [Arabidopsis thaliana]
gi|330250520|gb|AEC05614.1| protein TWIN LOV 1 [Arabidopsis thaliana]
Length = 399
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 53/82 (64%), Gaps = 4/82 (4%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNY--KKDGTPFWNLLTVTPIKDDSGKTIK 75
RFL G +TD + + ++++ + G+S ++LNY +KD + FWNLL ++P+++ SGKT
Sbjct: 297 RFLSGVDTDSSVLYEMKECILKGQSCTVQILNYSNRKDKSSFWNLLHISPVRNASGKTAY 356
Query: 76 FIGMQVEVSKYTEGVNDKALRP 97
F+G+QVE S K LRP
Sbjct: 357 FVGVQVEAS--CRNTEIKELRP 376
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI--KDDSGKTIK 75
+ QGP+T++ + +IR+A+R +S LLNY+K G+PFW L + P+ KDD GK
Sbjct: 75 KVFQGPKTNRRSIMEIREAIREERSVQVSLLNYRKSGSPFWMLFHMCPVFGKDD-GKVTN 133
Query: 76 FIGMQVEVS 84
F+ +QV +S
Sbjct: 134 FVAVQVPIS 142
>gi|333944373|pdb|3P7N|A Chain A, Crystal Structure Of Light Activated Transcription Factor
El222 From Erythrobacter Litoralis
gi|333944374|pdb|3P7N|B Chain B, Crystal Structure Of Light Activated Transcription Factor
El222 From Erythrobacter Litoralis
Length = 258
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 45/83 (54%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
+D TG C RFL G T+ +KIR VR K +LNYKKDGTPF N
Sbjct: 95 FTDLTGYSEEECVGRNCRFLAGSGTEPWLTDKIRQGVREHKPVLVEILNYKKDGTPFRNA 154
Query: 61 LTVTPIKDDSGKTIKFIGMQVEV 83
+ V PI DD + + F+G QVEV
Sbjct: 155 VLVAPIYDDDDELLYFLGSQVEV 177
>gi|323138393|ref|ZP_08073463.1| putative PAS/PAC sensor protein [Methylocystis sp. ATCC 49242]
gi|322396340|gb|EFX98871.1| putative PAS/PAC sensor protein [Methylocystis sp. ATCC 49242]
Length = 886
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 45/68 (66%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQGP TD +E+IR A+ G+ ++NY+KDG FWN L ++P+ DD+GK FI
Sbjct: 568 RMLQGPGTDPAVLEQIRHALAAGEICEVTMMNYRKDGGAFWNDLLISPVVDDTGKITHFI 627
Query: 78 GMQVEVSK 85
G+ +V++
Sbjct: 628 GVLTDVTE 635
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQ T K + ++ DA+R+G+ + G + + KK+G +W T+T ++D G+ ++
Sbjct: 315 RILQSGHTSKEQHRRLWDAIRSGEEWRGEIQDRKKNGELYWAQETITSLRDADGEITHYL 374
Query: 78 GMQVEVSKYTEGVNDK 93
+Q ++ TE DK
Sbjct: 375 AIQQDI---TEQKRDK 387
>gi|339483714|ref|YP_004695500.1| PAS sensor protein [Nitrosomonas sp. Is79A3]
gi|338805859|gb|AEJ02101.1| PAS sensor protein [Nitrosomonas sp. Is79A3]
Length = 150
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 47/67 (70%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG E D+ EV+K+R+A++N K L NY+K+G F+N L ++P+ D G + F+
Sbjct: 63 RFLQGKEHDQAEVDKLREAIKNKKPVEVTLHNYRKNGELFYNHLVMSPLFDSHGNLLYFL 122
Query: 78 GMQVEVS 84
G+Q++V+
Sbjct: 123 GVQLDVT 129
>gi|240138254|ref|YP_002962726.1| sensory transduction histidine kinase [Methylobacterium extorquens
AM1]
gi|240008223|gb|ACS39449.1| sensory transduction histidine kinase [Methylobacterium extorquens
AM1]
Length = 492
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 32/67 (47%), Positives = 40/67 (59%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD +V +IRDA+ LLN+KKDG FWN L V+P+ D G F
Sbjct: 71 RFLQGPETDPYDVARIRDAIERRVPIEIELLNHKKDGEVFWNRLLVSPVFDRDGALTYFF 130
Query: 78 GMQVEVS 84
Q +V+
Sbjct: 131 ASQFDVT 137
>gi|420240016|ref|ZP_14744286.1| PAS domain S-box [Rhizobium sp. CF080]
gi|398077991|gb|EJL68931.1| PAS domain S-box [Rhizobium sp. CF080]
Length = 349
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQG T + + +IR A+ + +LNYKKDGTPFWN L ++PI D G+ +
Sbjct: 76 RLLQGEATSRTALAQIRAAITQQREATIEILNYKKDGTPFWNQLHLSPIHDVQGELAYYF 135
Query: 78 GMQVEVSKY 86
Q++V+ Y
Sbjct: 136 ASQIDVTDY 144
>gi|334117274|ref|ZP_08491366.1| PAS/PAC sensor signal transduction histidine kinase [Microcoleus
vaginatus FGP-2]
gi|333462094|gb|EGK90699.1| PAS/PAC sensor signal transduction histidine kinase [Microcoleus
vaginatus FGP-2]
Length = 630
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLL-NYKKDGTPFWNLLTVTPIKDDSGKTIKF 76
RFL G +TD VE IR A++ +S C +L NY+KDGT FWN +++P++D GK F
Sbjct: 255 RFLHGSDTDPAAVEIIRQALQT-ESECKVILKNYRKDGTAFWNCFSISPVRDRLGKLTHF 313
Query: 77 IGMQVEVSK 85
IG+Q ++++
Sbjct: 314 IGVQRDITE 322
>gi|400603371|gb|EJP70969.1| hisactophilin C49S mutant/phototropin PHY3 fusion protein
[Beauveria bassiana ARSEF 2860]
Length = 833
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 43/67 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP T+ V++IR+ + G + LNY++DGTPF NL+ + P+ D G FI
Sbjct: 273 RFLQGPCTNPFSVKRIREKLEAGIEHYETFLNYRRDGTPFMNLVMLAPLYDSRGIIRYFI 332
Query: 78 GMQVEVS 84
G QV+VS
Sbjct: 333 GAQVDVS 339
>gi|116872177|ref|YP_848958.1| blue-light photoreceptor [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116741055|emb|CAK20175.1| blue-light photoreceptor (Phototropin homolog) [Listeria welshimeri
serovar 6b str. SLCC5334]
Length = 253
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
FLQG +TDK EV KIR A++ + L NY+KDG+ F N LT+ PI DD+G + F+
Sbjct: 57 HFLQGDDTDKEEVSKIRQAIKQKSTANVLLKNYRKDGSSFMNELTIEPINDDNGH-LYFV 115
Query: 78 GMQVEVS 84
G+Q +V+
Sbjct: 116 GIQKDVT 122
>gi|156062526|ref|XP_001597185.1| hypothetical protein SS1G_01379 [Sclerotinia sclerotiorum 1980]
gi|154696715|gb|EDN96453.1| hypothetical protein SS1G_01379 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 535
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD+ +++R +++N + LLNY+K+G PFWNLL V+P+ D +G F+
Sbjct: 238 RFLQGAYTDRQSTKRLRTSIQNCEETVELLLNYRKNGDPFWNLLYVSPLLDGNGDVRFFL 297
Query: 78 GMQVEVS 84
G Q+ S
Sbjct: 298 GGQINCS 304
>gi|299530043|ref|ZP_07043470.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni
S44]
gi|298722023|gb|EFI62953.1| diguanylate cyclase with PAS/PAC sensor [Comamonas testosteroni
S44]
Length = 435
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ +EL+G R LQGPETD+ +E++R + G+ + G +NY+KDGTP+
Sbjct: 34 MTGYATEELLG---RSPRILQGPETDQQVIEQLRQCLAEGRFFQGSAVNYRKDGTPYHVS 90
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKS 103
++ ++D GK F+ +Q +V++ E + L L+ +
Sbjct: 91 WNISAVRDVDGKITHFVSVQQDVTRQVESERQRDLMIQALNSA 133
>gi|310794734|gb|EFQ30195.1| hypothetical protein GLRG_05339 [Glomerella graminicola M1.001]
Length = 876
Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 59/116 (50%), Gaps = 16/116 (13%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD+ V +++ A+ K LLNYKK+G PFWNLL V P+ ++SG F+
Sbjct: 606 RFLQGVHTDREPVRRLKAAIEARKESVELLLNYKKNGDPFWNLLYVAPLYNESGMLSFFL 665
Query: 78 G---------------MQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQK-EKALG 117
G M+V S + V + A +P L +S AR+ KALG
Sbjct: 666 GGQINCSTTIHTNADIMKVLSSSSNDNVEEAAKKPPVLHRSTSAPSARRAFLKALG 721
>gi|392556351|ref|ZP_10303488.1| sensor protein [Pseudoalteromonas undina NCIMB 2128]
Length = 1101
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 8 ELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIK 67
E++G CS LQGP TDKN ++ I A++ K+ +LNYKKDGT FWN L ++P+
Sbjct: 474 EMLGIN--CS-LLQGPNTDKNAIDIITHAIKTLKTQRIEILNYKKDGTEFWNSLQISPVF 530
Query: 68 DDSGKTIKFIGMQVEVSK 85
++ + ++G+Q ++++
Sbjct: 531 NEQQQLTAYVGIQQDITE 548
>gi|312961435|ref|ZP_07775938.1| PAS [Pseudomonas fluorescens WH6]
gi|311284330|gb|EFQ62908.1| PAS [Pseudomonas fluorescens WH6]
Length = 519
Score = 66.2 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 44/68 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TDK+ + ++ A+ C ++NY+KDG+ FWN L + P+ ++ G+ + F
Sbjct: 65 RFLQGPHTDKDALRHVQRALERHHEVCVEVINYRKDGSTFWNELFLAPLFNERGQLVYFF 124
Query: 78 GMQVEVSK 85
Q++VS+
Sbjct: 125 ASQLDVSR 132
>gi|110679404|ref|YP_682411.1| sensory box histidine kinase [Roseobacter denitrificans OCh 114]
gi|109455520|gb|ABG31725.1| sensory box histidine kinase, putative [Roseobacter denitrificans
OCh 114]
Length = 350
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 43/66 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TDK V+ +R A+ ++ +LNYK +G PF N L V+PI D G+T FI
Sbjct: 70 RFLQGEDTDKAAVDVLRHAIELDQNVTVDILNYKANGAPFMNRLIVSPIMDAQGRTEYFI 129
Query: 78 GMQVEV 83
G+Q E+
Sbjct: 130 GIQKEL 135
>gi|428319523|ref|YP_007117405.1| PAS/PAC sensor signal transduction histidine kinase [Oscillatoria
nigro-viridis PCC 7112]
gi|428243203|gb|AFZ08989.1| PAS/PAC sensor signal transduction histidine kinase [Oscillatoria
nigro-viridis PCC 7112]
Length = 630
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLL-NYKKDGTPFWNLLTVTPIKDDSGKTIKF 76
RFL G +TD VE IR A++ +S C +L NY+KDGT FWN +++P++D G F
Sbjct: 255 RFLHGSDTDPAAVEIIRQALQ-AESECKVILKNYRKDGTAFWNCFSISPVRDRMGNLTHF 313
Query: 77 IGMQVEVSK 85
IG+Q ++++
Sbjct: 314 IGVQRDITQ 322
>gi|431927509|ref|YP_007240543.1| PAS domain-containing protein [Pseudomonas stutzeri RCH2]
gi|431825796|gb|AGA86913.1| PAS domain S-box [Pseudomonas stutzeri RCH2]
Length = 148
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 52/74 (70%), Gaps = 2/74 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLL-NYKKDGTPFWNLLTVTPIKDDSGKTIKF 76
RFLQG + D+ ++ IR+AV++ + C +++ NY+KDGTPFWN L++TP+ +++ + F
Sbjct: 54 RFLQGEDRDQAGLQAIREAVKSNQP-CRQIIRNYRKDGTPFWNELSITPVFNEADQLTYF 112
Query: 77 IGMQVEVSKYTEGV 90
IG+Q V+ + +
Sbjct: 113 IGIQKNVTAEVDAL 126
>gi|428313134|ref|YP_007124111.1| PAS domain-containing protein [Microcoleus sp. PCC 7113]
gi|428254746|gb|AFZ20705.1| PAS domain S-box [Microcoleus sp. PCC 7113]
Length = 880
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ETD + IR A+ + LLNY+K+G FWN L ++P+ + G + FI
Sbjct: 296 RFLQGAETDSEALRTIRHAITQRQEVKATLLNYRKNGQSFWNELKISPVFSEQGDLLYFI 355
Query: 78 GMQVEVSK 85
G+Q ++++
Sbjct: 356 GIQTDITE 363
>gi|403166863|ref|XP_003889942.1| hypothetical protein PGTG_21385 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375166743|gb|EHS63235.1| hypothetical protein PGTG_21385 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 612
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP T ++++R A++ G LLNYK DGTPF+ LL++ P+ D+ G +I
Sbjct: 399 RFLQGPGTSPQSIQRLRQALKQGLPSVELLLNYKADGTPFYCLLSIIPLFDEKGFLSYYI 458
Query: 78 GMQVEVS 84
G Q+ V+
Sbjct: 459 GGQINVT 465
>gi|168702193|ref|ZP_02734470.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
2246]
Length = 823
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 49/67 (73%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD+ V+++R A G++ LLNY++DGT FWN L+V+P++D++G+ ++
Sbjct: 371 RFLQGRDTDRAAVDRLRAAQAAGEACAIELLNYRRDGTAFWNGLSVSPVRDETGRVTHYV 430
Query: 78 GMQVEVS 84
G+ +V+
Sbjct: 431 GVLSDVT 437
>gi|409396211|ref|ZP_11247218.1| sensory box protein [Pseudomonas sp. Chol1]
gi|409119160|gb|EKM95546.1| sensory box protein [Pseudomonas sp. Chol1]
Length = 148
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 49/73 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + D+ ++ IR+AV++ + + NY+KDGTPFWN L++TP+ ++ + FI
Sbjct: 54 RFLQGEDRDQPGLQAIREAVKSNQPCRQVIRNYRKDGTPFWNELSITPVFNEGDQLTYFI 113
Query: 78 GMQVEVSKYTEGV 90
G+Q +V+ + +
Sbjct: 114 GIQKDVTAEVDAL 126
>gi|440740300|ref|ZP_20919790.1| histidine kinase [Pseudomonas fluorescens BRIP34879]
gi|440377195|gb|ELQ13846.1| histidine kinase [Pseudomonas fluorescens BRIP34879]
Length = 524
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 44/68 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQGPETDK + + + A+ C +LNY+KDG+ FWN + + P+ +++G+ + F
Sbjct: 72 RLLQGPETDKCALAQAQQAIERHHEVCVEVLNYRKDGSTFWNEIFIAPLFNEAGQLVYFF 131
Query: 78 GMQVEVSK 85
Q++VS+
Sbjct: 132 ASQLDVSR 139
>gi|431930291|ref|YP_007243337.1| PAS domain-containing protein [Thioflavicoccus mobilis 8321]
gi|431828594|gb|AGA89707.1| PAS domain S-box [Thioflavicoccus mobilis 8321]
Length = 155
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 46/68 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG E ++ EVE+IR+A+ + L NY+KDGT F+N T+ P+ D G+ I ++
Sbjct: 63 RFLQGEEQEQPEVERIREALSEERPVTVTLRNYRKDGTLFYNQFTIRPLFDPQGRLIYYL 122
Query: 78 GMQVEVSK 85
G+Q +V++
Sbjct: 123 GVQYDVTE 130
>gi|448390489|ref|ZP_21566112.1| multi-sensor signal transduction histidine kinase [Haloterrigena
salina JCM 13891]
gi|445666903|gb|ELZ19555.1| multi-sensor signal transduction histidine kinase [Haloterrigena
salina JCM 13891]
Length = 652
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 7/127 (5%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG T+ V+++R A+ +S L NY+ DG+ FWN +TV P+ D+ G ++
Sbjct: 365 RFLQGERTEAEPVDELRTAIDAERSTTVELRNYRTDGSEFWNRVTVAPVVDERGTVTNYV 424
Query: 78 GMQVEVSKYTEG-----VNDKALRPNGLSK-SLIRYDARQ-KEKALGSITEVIQTVKRSQ 130
G Q +V++ E V + LR N ++ S+IR A Q E++ G +T+
Sbjct: 425 GFQQDVTERKEATRQLRVLHRVLRHNLANQMSIIRGTAEQLAERSGGETAGAAETIVEEA 484
Query: 131 SHIRALS 137
+ L+
Sbjct: 485 DQLLGLT 491
>gi|336270302|ref|XP_003349910.1| hypothetical protein SMAC_00803 [Sordaria macrospora k-hell]
gi|380095299|emb|CCC06772.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 798
Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RF+QG T+ + V +IR+A+ G+ + ++NY+KDGTPFWN L + P+ +D G ++
Sbjct: 331 RFMQGHSTNSDAVRRIRNAIFTGQEHTEVIVNYRKDGTPFWNFLFICPLVED-GIVRYYL 389
Query: 78 GMQVEVSK 85
G Q+ +SK
Sbjct: 390 GGQINISK 397
>gi|70728336|ref|YP_258085.1| sensory box protein [Pseudomonas protegens Pf-5]
gi|68342635|gb|AAY90241.1| sensory box protein [Pseudomonas protegens Pf-5]
Length = 152
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 45/67 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQ + D+ +E IR A+R G+ L NY+KDG+ FWN L++TP+ +DS + FI
Sbjct: 54 RFLQSGDRDQPGLEVIRQALRQGRPCREVLRNYRKDGSHFWNELSITPVFNDSDQLTYFI 113
Query: 78 GMQVEVS 84
G+Q +VS
Sbjct: 114 GVQKDVS 120
>gi|407689003|ref|YP_006804176.1| sensory box protein [Alteromonas macleodii str. 'Balearic Sea
AD45']
gi|407292383|gb|AFT96695.1| sensory box protein [Alteromonas macleodii str. 'Balearic Sea
AD45']
Length = 580
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78
FLQG ETDK V+ IR ++N +++ +LNY+KDGTP+W L++ P+ + K + FI
Sbjct: 301 FLQGEETDKRTVDVIRQKIKNREAFYDEILNYRKDGTPYWTSLSINPVFKEE-KLVNFIA 359
Query: 79 MQVEVSKYTEGVNDKALRPNGLSKSLI 105
+Q ++++ + D + + +L+
Sbjct: 360 VQADITRVKQMALDFTNKLKAIGSALV 386
>gi|406596813|ref|YP_006747943.1| sensory box protein [Alteromonas macleodii ATCC 27126]
gi|406598061|ref|YP_006749191.1| sensory box protein [Alteromonas macleodii ATCC 27126]
gi|406374134|gb|AFS37389.1| sensory box protein [Alteromonas macleodii ATCC 27126]
gi|406375382|gb|AFS38637.1| sensory box protein [Alteromonas macleodii ATCC 27126]
Length = 580
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78
FLQG ETDK V+ IR ++N +++ +LNY+KDGTP+W L++ P+ + K + FI
Sbjct: 301 FLQGEETDKRTVDVIRQKIKNREAFYDEILNYRKDGTPYWTSLSINPVFKEE-KLVNFIA 359
Query: 79 MQVEVSKYTEGVNDKALRPNGLSKSLI 105
+Q ++++ + D + + +L+
Sbjct: 360 VQADITRVKQMALDFTNKLKAIGSALV 386
>gi|399911282|ref|ZP_10779596.1| sensory box/FOG: EAL domain/GGDEF domain containing protein
[Halomonas sp. KM-1]
Length = 743
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 45/71 (63%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R+L G ETD ++ +R A++ LLNY+KD + FWN L+++PI D+ + FI
Sbjct: 227 RYLHGEETDPQALDALRSALQRHTEIEVTLLNYRKDKSTFWNHLSISPILDEHERCTHFI 286
Query: 78 GMQVEVSKYTE 88
G+Q +++KY E
Sbjct: 287 GIQQDITKYRE 297
>gi|448474944|ref|ZP_21602709.1| histidine kinase [Halorubrum aidingense JCM 13560]
gi|445816936|gb|EMA66818.1| histidine kinase [Halorubrum aidingense JCM 13560]
Length = 522
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 9/109 (8%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ETD + +R+A+ + +LNY+++G FWN LTV PI+D G ++
Sbjct: 211 RFLQGEETDPDTRATLREAIDAERPVSVDILNYRRNGQKFWNRLTVAPIRDGDGTVTHYV 270
Query: 78 GMQVEVSKYTEGVNDKALRPNGLS--KSLIRYDARQKEKALGSITEVIQ 124
G Q +++ D+ +R L ++ ++ R K + TE+++
Sbjct: 271 GFQTDIT-------DRKIRERRLEVMSRVLNHNLRNKMNLVDGYTELLR 312
>gi|157694031|ref|YP_001488493.1| hypothetical protein BPUM_3280 [Bacillus pumilus SAFR-032]
gi|194016222|ref|ZP_03054836.1| YtvA [Bacillus pumilus ATCC 7061]
gi|157682789|gb|ABV63933.1| hypothetical protein BPUM_3280 [Bacillus pumilus SAFR-032]
gi|194011695|gb|EDW21263.1| YtvA [Bacillus pumilus ATCC 7061]
Length = 262
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 49/73 (67%), Gaps = 2/73 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTP--IKDDSGKTIK 75
RFLQG ET++ +++IR A+ N ++ +L NYKK G FWN L+V P I ++ GK +
Sbjct: 61 RFLQGNETEQIALQQIRTAIENKEAVTVQLKNYKKSGQMFWNELSVAPLWIDENEGKRLY 120
Query: 76 FIGMQVEVSKYTE 88
F+G+Q +V+K E
Sbjct: 121 FVGLQKDVTKEKE 133
>gi|448463216|ref|ZP_21597994.1| pas domain s-box [Halorubrum kocurii JCM 14978]
gi|445817211|gb|EMA67087.1| pas domain s-box [Halorubrum kocurii JCM 14978]
Length = 607
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD V+++R+A+ + LLNY+KDG PFWN ++V PI +D G +++
Sbjct: 307 RFLQGEDTDPETVDRLREAIDAEEPASVELLNYRKDGAPFWNRVSVAPICED-GSVSEWV 365
Query: 78 GMQVEVSKY 86
G Q +++ +
Sbjct: 366 GFQEDITAF 374
>gi|354569046|ref|ZP_08988205.1| multi-sensor signal transduction histidine kinase [Fischerella sp.
JSC-11]
gi|353539050|gb|EHC08546.1| multi-sensor signal transduction histidine kinase [Fischerella sp.
JSC-11]
Length = 1039
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 49/68 (72%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +T++ E++++R+A++ K+ L NY+KDG+ FWN L+++P+ D G ++
Sbjct: 599 RFLQGNDTNQPEIQELRNAIQQAKNCTVILRNYRKDGSLFWNELSISPVFDADGNCTHYV 658
Query: 78 GMQVEVSK 85
G+Q ++++
Sbjct: 659 GIQNDITE 666
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 42/68 (61%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQG +D+ ++++IR A++N L+NY K+G+ +W + + PI D GK F+
Sbjct: 211 RILQGELSDRTQLDRIRTALQNCLPVRAELINYHKNGSTYWVEINIVPIADAQGKITHFV 270
Query: 78 GMQVEVSK 85
+Q ++++
Sbjct: 271 SIQRDITE 278
>gi|409101099|ref|ZP_11221123.1| PAS/PAC sensor signal transduction histidine kinase [Pedobacter
agri PB92]
Length = 517
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 41/68 (60%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG E D+ E IR AV G S L NY+K+G FWN L ++PI GK FI
Sbjct: 69 RFLQGTERDQQAREDIRKAVNEGHSITVELRNYRKNGELFWNELFISPISIHDGKVSHFI 128
Query: 78 GMQVEVSK 85
G+Q ++++
Sbjct: 129 GVQNDITR 136
>gi|421531106|ref|ZP_15977542.1| putative PAS/PAC sensor protein [Pseudomonas putida S11]
gi|402211447|gb|EJT82908.1| putative PAS/PAC sensor protein [Pseudomonas putida S11]
Length = 142
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 46/71 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQ + D+ +IR A+ G+ L NY+KDG+PFWN L++TP++ D+ + FI
Sbjct: 54 RFLQADDRDQLGRARIRKALAEGRPCREVLRNYRKDGSPFWNELSITPVRHDAEQRTYFI 113
Query: 78 GMQVEVSKYTE 88
G+Q +V++ E
Sbjct: 114 GIQKDVTRQVE 124
>gi|336239517|ref|XP_003342678.1| hypothetical protein SMAC_10293 [Sordaria macrospora k-hell]
Length = 246
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 45/68 (66%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD + V +I +A+R + ++NYKK+G+ FWN L ++P+ D G+ +
Sbjct: 104 RFLQGPDTDPDTVAEISEAIRRHRETSVEIINYKKNGSAFWNALFISPVLDGEGELRYYF 163
Query: 78 GMQVEVSK 85
Q++V++
Sbjct: 164 ASQLDVTR 171
>gi|398828821|ref|ZP_10587021.1| PAS domain S-box [Phyllobacterium sp. YR531]
gi|398217679|gb|EJN04196.1| PAS domain S-box [Phyllobacterium sp. YR531]
Length = 485
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 43/67 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG T+ +V +IRDAV + LLNY+KDG+ FWN + ++P+ DD+G+ F
Sbjct: 70 RFLQGTGTNDEDVTRIRDAVARREPIEIDLLNYRKDGSSFWNRVLISPVFDDTGELKYFF 129
Query: 78 GMQVEVS 84
Q +VS
Sbjct: 130 ASQFDVS 136
>gi|403166865|ref|XP_003326736.2| hypothetical protein PGTG_07714 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375166744|gb|EFP82317.2| hypothetical protein PGTG_07714 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 669
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP T ++++R A++ G LLNYK DGTPF+ LL++ P+ D+ G +I
Sbjct: 399 RFLQGPGTSPQSIQRLRQALKQGLPCVELLLNYKADGTPFYCLLSIIPLFDEKGFLSYYI 458
Query: 78 GMQVEVS 84
G Q+ V+
Sbjct: 459 GGQINVT 465
>gi|299473575|emb|CBN77970.1| aureochrome 3 [Ectocarpus siliculosus]
Length = 275
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 40/68 (58%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD VEKIR A+ G L NY+ DG FWN + ++D G I ++
Sbjct: 172 RFLQGPDTDPKAVEKIRKAIEKGMDTSVCLRNYRVDGAMFWNQFFIAALRDSEGTVINYV 231
Query: 78 GMQVEVSK 85
G+Q +V +
Sbjct: 232 GVQCKVDE 239
>gi|311069523|ref|YP_003974446.1| blue light GTP-binding receptor [Bacillus atrophaeus 1942]
gi|419819819|ref|ZP_14343437.1| blue light GTP-binding receptor [Bacillus atrophaeus C89]
gi|310870040|gb|ADP33515.1| blue light GTP-binding receptor [Bacillus atrophaeus 1942]
gi|388475938|gb|EIM12643.1| blue light GTP-binding receptor [Bacillus atrophaeus C89]
Length = 263
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 42/71 (59%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD EV KIR + N + +L NYKKDGT FWN L + PI + F+
Sbjct: 63 RFLQGNQTDAQEVAKIRTGLTNKQPITVQLQNYKKDGTMFWNELNIDPIYIEQEDKTYFV 122
Query: 78 GMQVEVSKYTE 88
G Q ++++ E
Sbjct: 123 GFQKDITQQKE 133
>gi|339489338|ref|YP_004703866.1| putative PAS/PAC sensor protein [Pseudomonas putida S16]
gi|338840181|gb|AEJ14986.1| putative PAS/PAC sensor protein [Pseudomonas putida S16]
Length = 142
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 46/71 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQ + D+ +IR A+ G+ L NY+KDG+PFWN L++TP++ D+ + FI
Sbjct: 54 RFLQADDRDQLGRARIRKALAEGRPCREVLRNYRKDGSPFWNELSITPVRHDTEQRTYFI 113
Query: 78 GMQVEVSKYTE 88
G+Q +V++ E
Sbjct: 114 GIQKDVTRQVE 124
>gi|121606050|ref|YP_983379.1| PAS/PAC sensor signal transduction histidine kinase [Polaromonas
naphthalenivorans CJ2]
gi|120595019|gb|ABM38458.1| PAS/PAC sensor signal transduction histidine kinase [Polaromonas
naphthalenivorans CJ2]
Length = 389
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG T + ++ +R A+ NG L N++KDGT FWN LTV+P+ +DSG ++
Sbjct: 69 RFLQGGLTTQPGLQTLRTAIANGVESTVLLRNFRKDGTGFWNELTVSPVLNDSGTLTHYV 128
Query: 78 GMQVEVS 84
G+Q +V+
Sbjct: 129 GIQHDVT 135
>gi|308807791|ref|XP_003081206.1| PAS (ISS) [Ostreococcus tauri]
gi|116059668|emb|CAL55375.1| PAS (ISS) [Ostreococcus tauri]
Length = 933
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 64/110 (58%), Gaps = 6/110 (5%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD E+ K+R A+ G++ L NYKK G F N L++TPI+D G + ++
Sbjct: 148 RFLQGPGTDLKELGKVRAAITKGEACTVVLKNYKKSGEEFMNQLSLTPIRDGEGNVMYYV 207
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDA--RQKEKALGSITEVIQT 125
G+Q ++++ + +D+ N L K + R +A K + L ++ I+T
Sbjct: 208 GIQSDITELFKRRDDEL---NAL-KKVARAEAATEAKSRFLAHMSHEIRT 253
>gi|448301844|ref|ZP_21491834.1| HTR-like protein [Natronorubrum tibetense GA33]
gi|445583468|gb|ELY37799.1| HTR-like protein [Natronorubrum tibetense GA33]
Length = 563
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 43/68 (63%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +T + V+K+R AV N + L NY+ DGT FWN + + P+ DD+G F+
Sbjct: 150 RFLQGEQTREEPVDKLRTAVENREPVTVELRNYRADGTKFWNHVRIAPLFDDNGDIEYFV 209
Query: 78 GMQVEVSK 85
G Q +V+K
Sbjct: 210 GFQNDVTK 217
>gi|158853255|dbj|BAF91489.1| aureochrome2 [Vaucheria frigida]
gi|158853259|dbj|BAF91491.1| aureochrome2 [Vaucheria frigida]
Length = 343
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD + V +R + GK +LNY G PFWN + + ++D SG+ I F+
Sbjct: 262 RFLQGPDTDPDAVRILRKGIVEGKDTDVTILNYNASGEPFWNHVFIAALRDSSGQVINFV 321
Query: 78 GMQVEVSK 85
G+Q V +
Sbjct: 322 GIQHVVQR 329
>gi|443632380|ref|ZP_21116560.1| sensory box protein [Bacillus subtilis subsp. inaquosorum KCTC
13429]
gi|443348495|gb|ELS62552.1| sensory box protein [Bacillus subtilis subsp. inaquosorum KCTC
13429]
Length = 261
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD EV+ IR A++N + ++ NYKKDGT FWN L + P++ + GKT F+
Sbjct: 63 RFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPLEIE-GKTY-FV 120
Query: 78 GMQVEVSKYTE 88
G+Q +++K E
Sbjct: 121 GIQKDITKQKE 131
>gi|386013826|ref|YP_005932103.1| Putative PAS/PAC sensor protein [Pseudomonas putida BIRD-1]
gi|313500532|gb|ADR61898.1| Putative PAS/PAC sensor protein [Pseudomonas putida BIRD-1]
Length = 142
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 45/71 (63%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + D+ +IR A+ G+ L NY+KDG+ FWN L++TP+K D + FI
Sbjct: 54 RFLQGDDRDQLGRARIRKAMAEGRPCREVLRNYRKDGSAFWNELSITPVKSDFDQRTYFI 113
Query: 78 GMQVEVSKYTE 88
G+Q +VS+ E
Sbjct: 114 GIQKDVSRQVE 124
>gi|412990839|emb|CCO18211.1| multi-sensor hybrid histidine kinase [Bathycoccus prasinos]
Length = 1058
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 48/74 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPET+ V KI+ AV NG S +L NYKK+G F N L++ PI++++ ++
Sbjct: 167 RFLQGPETEPEVVRKIKYAVMNGLSITCQLKNYKKNGEMFINNLSLKPIRNENSVVTHYV 226
Query: 78 GMQVEVSKYTEGVN 91
G+Q +V+K + N
Sbjct: 227 GIQSDVTKIVDSQN 240
>gi|347838679|emb|CCD53251.1| similar to regulator of G protein [Botryotinia fuckeliana]
Length = 593
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD+ +++R ++ N + LLNY+K+G PFWNLL V+P+ D +G F+
Sbjct: 293 RFLQGSFTDRQATKRLRTSIENREETVELLLNYRKNGDPFWNLLYVSPLLDGNGDVRFFL 352
Query: 78 GMQVEVS 84
G Q+ S
Sbjct: 353 GGQINCS 359
>gi|171915309|ref|ZP_02930779.1| Multi-sensor Hybrid Histidine Kinase [Verrucomicrobium spinosum DSM
4136]
Length = 1205
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 46/67 (68%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78
FLQGPETD V+ +R+ +R G+ + ++LNY+++G +W L V P++D SG+ F+
Sbjct: 161 FLQGPETDPATVDLMREKIRTGQPFTTQVLNYRRNGERYWLHLDVQPLRDPSGEVTSFLA 220
Query: 79 MQVEVSK 85
++ ++S+
Sbjct: 221 IENDISQ 227
>gi|443473374|ref|ZP_21063398.1| Signal transduction histidine kinase [Pseudomonas pseudoalcaligenes
KF707]
gi|442904111|gb|ELS29227.1| Signal transduction histidine kinase [Pseudomonas pseudoalcaligenes
KF707]
Length = 148
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + D+ + IR A+R G+ + NY+KDG+ FWN L++TP+ ++S + FI
Sbjct: 54 RFLQGEDRDQLGLAAIRQAIRAGQPCRQVIRNYRKDGSAFWNELSITPVFNESDQLTYFI 113
Query: 78 GMQVEVSKYTEG 89
G+Q V++ E
Sbjct: 114 GIQKNVTEQVEA 125
>gi|428176404|gb|EKX45289.1| hypothetical protein GUITHDRAFT_71576 [Guillardia theta CCMP2712]
Length = 122
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 38/49 (77%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI 66
RFLQGP+TD+++V +IR+A++ G+ +LNYKKDGT FWN L + P+
Sbjct: 61 RFLQGPDTDRDDVTEIREAIKAGRPVSSCILNYKKDGTLFWNHLHIEPV 109
>gi|448443537|ref|ZP_21589577.1| HTR-like protein [Halorubrum saccharovorum DSM 1137]
gi|445686745|gb|ELZ39053.1| HTR-like protein [Halorubrum saccharovorum DSM 1137]
Length = 717
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG T+ V+++R A+ N + L NY+KDGT FWN + V P+ DD G+ F+
Sbjct: 316 RFLQGEATEDEPVQRLRTAIDNREPVTVELRNYRKDGTEFWNRVRVAPLFDDDGEVDLFV 375
Query: 78 GMQVEVS---KYTEGVNDKALRPNGL 100
G Q +V+ +Y + + + R L
Sbjct: 376 GFQDDVTDRKRYEQQLRSNSARLEAL 401
>gi|26991313|ref|NP_746738.1| sensory box protein [Pseudomonas putida KT2440]
gi|24986372|gb|AAN70202.1|AE016659_8 sensory box protein [Pseudomonas putida KT2440]
Length = 142
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 45/71 (63%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + D+ +IR A+ G+ L NY+KDG+ FWN L++TP+K D + FI
Sbjct: 54 RFLQGDDRDQLGRARIRKAMAEGRPCREVLRNYRKDGSAFWNELSITPVKSDFDQRTYFI 113
Query: 78 GMQVEVSKYTE 88
G+Q +VS+ E
Sbjct: 114 GIQKDVSRQVE 124
>gi|378734080|gb|EHY60539.1| non-specific serine/threonine protein kinase [Exophiala
dermatitidis NIH/UT8656]
Length = 603
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/75 (44%), Positives = 43/75 (57%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQ TDK+ V ++R+A+ + LLN KK G PFWNLL TP+ DD G + F+
Sbjct: 326 RFLQCRHTDKSAVGRLREAIVLRQESVELLLNQKKSGEPFWNLLYTTPLFDDRGNLVFFL 385
Query: 78 GMQVEVSKYTEGVND 92
G QV S +D
Sbjct: 386 GGQVNCSTTIHNASD 400
>gi|347754168|ref|YP_004861732.1| PAS domain S-box protein [Candidatus Chloracidobacterium
thermophilum B]
gi|347586686|gb|AEP11216.1| PAS domain S-box [Candidatus Chloracidobacterium thermophilum B]
Length = 736
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ T E IG R LQGPET +IR A++N + L+NY+KDG PFW+
Sbjct: 251 MTGYTALEAIG---QTPRMLQGPETSAEARARIRQALQNWQPITIELINYRKDGHPFWSE 307
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSK 85
L + PI D++G ++ +Q +V++
Sbjct: 308 LAIVPIADETGYYTHWVAVQRDVTE 332
>gi|375332434|pdb|3SW1|A Chain A, Structure Of A Full-Length Bacterial Lov Protein
gi|375332435|pdb|3SW1|B Chain B, Structure Of A Full-Length Bacterial Lov Protein
Length = 162
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 45/71 (63%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + D+ +IR A+ G+ L NY+KDG+ FWN L++TP+K D + FI
Sbjct: 74 RFLQGDDRDQLGRARIRKAMAEGRPCREVLRNYRKDGSAFWNELSITPVKSDFDQRTYFI 133
Query: 78 GMQVEVSKYTE 88
G+Q +VS+ E
Sbjct: 134 GIQKDVSRQVE 144
>gi|395218608|ref|ZP_10402249.1| PAS/PAC sensor signal transduction histidine kinase [Pontibacter
sp. BAB1700]
gi|394454260|gb|EJF08954.1| PAS/PAC sensor signal transduction histidine kinase [Pontibacter
sp. BAB1700]
Length = 729
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 43/70 (61%)
Query: 20 LQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGM 79
LQGP+TD + V++IR ++ + RL+NY+K G FW + +TPI D+ G +FI +
Sbjct: 417 LQGPDTDPDAVQQIRKGLQEASHFSARLINYRKSGDRFWVSMDITPILDEKGTVTRFIAV 476
Query: 80 QVEVSKYTEG 89
Q +++ E
Sbjct: 477 QRDITLQKEA 486
>gi|182412210|ref|YP_001817276.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
gi|177839424|gb|ACB73676.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
Length = 1342
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 44/69 (63%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
+FLQGP+TD V +IR A+ G+ +LNY K P+W ++ + P++D SGK I +I
Sbjct: 364 QFLQGPDTDPAVVAQIRRALETGERCYAEVLNYTKSRHPYWQIVDMEPVRDASGKLINWI 423
Query: 78 GMQVEVSKY 86
+Q +V+ +
Sbjct: 424 AIQTDVTAH 432
>gi|344338687|ref|ZP_08769618.1| PAS sensor protein [Thiocapsa marina 5811]
gi|343801269|gb|EGV19212.1| PAS sensor protein [Thiocapsa marina 5811]
Length = 153
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 45/68 (66%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQG + D+ +EK+R+A+R K L NY+KDGT F+N ++ P+ D GK I F+
Sbjct: 63 RILQGQDRDQEGLEKVREAIRERKRTTVTLRNYRKDGTLFYNRFSIRPLYDRQGKLIYFL 122
Query: 78 GMQVEVSK 85
G+Q +V++
Sbjct: 123 GVQYDVTE 130
>gi|448689107|ref|ZP_21694844.1| HTR-like protein [Haloarcula japonica DSM 6131]
gi|445778977|gb|EMA29919.1| HTR-like protein [Haloarcula japonica DSM 6131]
Length = 726
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 41/67 (61%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQG TD V ++RDA+ + L NY+KDGT FWN + + P++DD G + ++
Sbjct: 320 RILQGENTDPAPVTRMRDAIDAEERVTVELRNYRKDGTEFWNRVHIAPVRDDDGAVVNYV 379
Query: 78 GMQVEVS 84
G Q +++
Sbjct: 380 GFQQDIT 386
>gi|448569956|ref|ZP_21639039.1| HTR-like protein [Haloferax lucentense DSM 14919]
gi|448599646|ref|ZP_21655449.1| HTR-like protein [Haloferax alexandrinus JCM 10717]
gi|445723760|gb|ELZ75397.1| HTR-like protein [Haloferax lucentense DSM 14919]
gi|445736319|gb|ELZ87863.1| HTR-like protein [Haloferax alexandrinus JCM 10717]
Length = 725
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD++ V ++R AV ++ LLNY+KDGT FWN + + P+ DD G F+
Sbjct: 307 RFLQGEATDEDAVAELRAAVDEREAVTTELLNYRKDGTEFWNRVRIAPLFDDDGVIDFFV 366
Query: 78 GMQVEVS 84
G Q +++
Sbjct: 367 GFQDDIT 373
>gi|410092868|ref|ZP_11289376.1| putative PAS/PAC sensor protein [Pseudomonas viridiflava UASWS0038]
gi|409759775|gb|EKN44969.1| putative PAS/PAC sensor protein [Pseudomonas viridiflava UASWS0038]
Length = 151
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLL-NYKKDGTPFWNLLTVTPIKDDSGKTIKF 76
RFLQ + + +E I+ A+R+G++ C ++L NY+KDG+ FWN L++TP+++++ + + +
Sbjct: 54 RFLQATDRQQEALEAIQKAIRSGQA-CRQILRNYRKDGSTFWNELSITPVRNEANQLMYY 112
Query: 77 IGMQVEVS 84
IG+Q +V+
Sbjct: 113 IGIQKDVT 120
>gi|87199253|ref|YP_496510.1| LuxR family transcriptional regulator [Novosphingobium
aromaticivorans DSM 12444]
gi|87134934|gb|ABD25676.1| transcriptional regulator, LuxR family [Novosphingobium
aromaticivorans DSM 12444]
Length = 223
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFL+G T+ ++ +RD + + ++NYKKDGT F N + V PI D G+ F+
Sbjct: 77 RFLRGSGTEDDKARILRDGIWRKQPVMVEIVNYKKDGTRFRNAVMVAPIFDADGEVEYFL 136
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKE 113
G QVE+++ ND R NG ++ + R RQKE
Sbjct: 137 GSQVEIAEDQGQANDA--RRNGAAERVERLSRRQKE 170
>gi|448547506|ref|ZP_21626927.1| HTR-like protein [Haloferax sp. ATCC BAA-645]
gi|445715876|gb|ELZ67628.1| HTR-like protein [Haloferax sp. ATCC BAA-645]
Length = 731
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD++ V ++R AV ++ LLNY+KDGT FWN + + P+ DD G F+
Sbjct: 307 RFLQGEATDEDAVAELRAAVDEREAVTTELLNYRKDGTEFWNRVRIAPLFDDDGVIDFFV 366
Query: 78 GMQVEVS 84
G Q +++
Sbjct: 367 GFQDDIT 373
>gi|388546160|ref|ZP_10149437.1| sensory box protein [Pseudomonas sp. M47T1]
gi|388275687|gb|EIK95272.1| sensory box protein [Pseudomonas sp. M47T1]
Length = 152
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 46/67 (68%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQ + D++ ++ IR A+ G+ RL N++KDGT FWN L++TP+ ++S K FI
Sbjct: 54 RFLQNGDRDESVLQLIRQAIDQGQPCRQRLRNFRKDGTAFWNELSITPVYNESDKLTYFI 113
Query: 78 GMQVEVS 84
G+Q +V+
Sbjct: 114 GIQKDVT 120
>gi|154304988|ref|XP_001552897.1| hypothetical protein BC1G_08584 [Botryotinia fuckeliana B05.10]
Length = 593
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD+ +++R ++ N + LLNY+K+G PFWNLL V+P+ D +G F+
Sbjct: 293 RFLQGSFTDRQATKRLRTSIENCEETVELLLNYRKNGDPFWNLLYVSPLLDGNGDVRFFL 352
Query: 78 GMQVEVS 84
G Q+ S
Sbjct: 353 GGQINCS 359
>gi|452847676|gb|EME49608.1| hypothetical protein DOTSEDRAFT_118302 [Dothistroma septosporum
NZE10]
Length = 658
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 40/67 (59%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP + + V ++ A GK + +NY++DG+PF NLL P+ D G FI
Sbjct: 275 RFLQGPRSSPHSVRRLAIACTQGKEHTEVFVNYRRDGSPFMNLLMTAPLMDSRGNIRYFI 334
Query: 78 GMQVEVS 84
G QV+VS
Sbjct: 335 GAQVDVS 341
>gi|427714672|ref|YP_007063296.1| PAS domain-containing protein [Synechococcus sp. PCC 6312]
gi|427378801|gb|AFY62753.1| PAS domain S-box [Synechococcus sp. PCC 6312]
Length = 1154
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/81 (39%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + ++ ++ +R A++ G+S L N +K+GT FWN L+++PI DD G+ +I
Sbjct: 366 RFLQGDDQNQPGLQALRHAIKKGQSGRVVLKNIRKNGTVFWNELSISPIYDDQGQLTHYI 425
Query: 78 GMQVEVS--KYTEGVNDKALR 96
G+Q +VS K E V + +R
Sbjct: 426 GIQTDVSERKRAEAVLQQQMR 446
>gi|431802228|ref|YP_007229131.1| PAS/PAC sensor protein [Pseudomonas putida HB3267]
gi|430792993|gb|AGA73188.1| putative PAS/PAC sensor protein [Pseudomonas putida HB3267]
Length = 148
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 45/67 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + + + IR+A+R G C L NY+KDG+ FWN L+VTP+ +++ + +I
Sbjct: 54 RFLQGDDHGQAGLANIREAIRGGLPCCQVLRNYRKDGSLFWNELSVTPVYNEADQLTYYI 113
Query: 78 GMQVEVS 84
G+Q +V+
Sbjct: 114 GIQRDVT 120
>gi|345304596|ref|YP_004826498.1| multi-sensor signal transduction histidine kinase [Rhodothermus
marinus SG0.5JP17-172]
gi|345113829|gb|AEN74661.1| multi-sensor signal transduction histidine kinase [Rhodothermus
marinus SG0.5JP17-172]
Length = 784
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 42/67 (62%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78
L GP+TD VE+IR A+R + R+ NY+KDG+ FWN LT+ P+ G FIG
Sbjct: 465 LLHGPQTDPRTVEEIRKALREVRPVRVRIFNYRKDGSGFWNSLTIDPLYASDGSHQGFIG 524
Query: 79 MQVEVSK 85
+Q ++S+
Sbjct: 525 IQNDISE 531
>gi|422408915|ref|ZP_16485876.1| blue-light photoreceptor [Listeria monocytogenes FSL F2-208]
gi|313609968|gb|EFR85347.1| blue-light photoreceptor [Listeria monocytogenes FSL F2-208]
Length = 253
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 45/68 (66%), Gaps = 3/68 (4%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLL-NYKKDGTPFWNLLTVTPIKDDSGKTIKF 76
FLQG +TDK EV KIR A+ N KS LL NY+KDGT F N LT+ PI DD + F
Sbjct: 57 HFLQGDDTDKEEVAKIRHAI-NQKSTANVLLKNYRKDGTSFMNELTIEPIYDDHNH-LYF 114
Query: 77 IGMQVEVS 84
+G+Q +V+
Sbjct: 115 VGIQKDVT 122
>gi|217965111|ref|YP_002350789.1| blue-light photoreceptor [Listeria monocytogenes HCC23]
gi|290893762|ref|ZP_06556742.1| blue-light photoreceptor [Listeria monocytogenes FSL J2-071]
gi|386007519|ref|YP_005925797.1| blue-light photoreceptor [Listeria monocytogenes L99]
gi|386026112|ref|YP_005946888.1| putative blue-light photoreceptor phototropin [Listeria
monocytogenes M7]
gi|404407250|ref|YP_006689965.1| blue-light photoreceptor [Listeria monocytogenes SLCC2376]
gi|217334381|gb|ACK40175.1| blue-light photoreceptor [Listeria monocytogenes HCC23]
gi|290556711|gb|EFD90245.1| blue-light photoreceptor [Listeria monocytogenes FSL J2-071]
gi|307570329|emb|CAR83508.1| blue-light photoreceptor [Listeria monocytogenes L99]
gi|336022693|gb|AEH91830.1| putative blue-light photoreceptor phototropin [Listeria
monocytogenes M7]
gi|404241399|emb|CBY62799.1| blue-light photoreceptor [Listeria monocytogenes SLCC2376]
Length = 253
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 45/68 (66%), Gaps = 3/68 (4%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLL-NYKKDGTPFWNLLTVTPIKDDSGKTIKF 76
FLQG +TDK EV KIR A+ N KS LL NY+KDGT F N LT+ PI DD + F
Sbjct: 57 HFLQGDDTDKEEVAKIRHAI-NQKSTANVLLKNYRKDGTSFMNELTIEPIYDDHNH-LYF 114
Query: 77 IGMQVEVS 84
+G+Q +V+
Sbjct: 115 VGIQKDVT 122
>gi|254993747|ref|ZP_05275937.1| hypothetical protein LmonocytoFSL_12763 [Listeria monocytogenes
FSL J2-064]
Length = 217
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 45/68 (66%), Gaps = 3/68 (4%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLL-NYKKDGTPFWNLLTVTPIKDDSGKTIKF 76
FLQG +TDK EV KIR A+ N KS LL NY+KDGT F N LT+ PI DD + F
Sbjct: 21 HFLQGDDTDKKEVAKIRHAI-NEKSTANVLLKNYRKDGTSFMNELTIEPIYDDHNH-LYF 78
Query: 77 IGMQVEVS 84
+G+Q +V+
Sbjct: 79 VGIQKDVT 86
>gi|448720995|ref|ZP_21703582.1| bacterio-opsin activator [Halobiforma nitratireducens JCM 10879]
gi|445780154|gb|EMA31056.1| bacterio-opsin activator [Halobiforma nitratireducens JCM 10879]
Length = 672
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTI--- 74
R LQGP+TD +EK+ + +R+G+ + NY++DGTPFWN LT+ PI ++
Sbjct: 184 RLLQGPDTDDEAIEKLANGIRDGEPTTVEIRNYRRDGTPFWNELTIAPIGNEGDDATADD 243
Query: 75 ---KFIGMQVEVS 84
++G Q +VS
Sbjct: 244 EYAHYVGFQNDVS 256
>gi|424713676|ref|YP_007014391.1| Blue-light photoreceptor [Listeria monocytogenes serotype 4b str.
LL195]
gi|424012860|emb|CCO63400.1| Blue-light photoreceptor [Listeria monocytogenes serotype 4b str.
LL195]
Length = 302
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 45/68 (66%), Gaps = 3/68 (4%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLL-NYKKDGTPFWNLLTVTPIKDDSGKTIKF 76
FLQG +TDK EV KIR A+ N KS LL NY+KDGT F N LT+ PI DD + F
Sbjct: 106 HFLQGDDTDKKEVAKIRHAI-NEKSTANVLLKNYRKDGTSFMNELTIEPIYDDHNH-LYF 163
Query: 77 IGMQVEVS 84
+G+Q +V+
Sbjct: 164 VGIQKDVT 171
>gi|323136775|ref|ZP_08071856.1| PAS sensor protein [Methylocystis sp. ATCC 49242]
gi|322398092|gb|EFY00613.1| PAS sensor protein [Methylocystis sp. ATCC 49242]
Length = 149
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M T +E+IG + RFLQG + D+ E+E++R A++ G++ L NY+K+G F N
Sbjct: 48 MCGYTQEEIIG---INCRFLQGSDRDQPELERLRAAIKKGEAVEVTLRNYRKNGELFHNR 104
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSKYTEG 89
L V P+ D+ G + F+G+Q ++++ E
Sbjct: 105 LVVKPLFDERGNVVYFLGVQYDITEQVEA 133
>gi|448540589|ref|ZP_21623599.1| HTR-like protein [Haloferax sp. ATCC BAA-646]
gi|445709223|gb|ELZ61055.1| HTR-like protein [Haloferax sp. ATCC BAA-646]
Length = 817
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD++ V ++R AV ++ LLNY+KDGT FWN + + P+ DD G F+
Sbjct: 359 RFLQGEATDEDAVAELRAAVDEREAVTTELLNYRKDGTEFWNRVRIAPLFDDDGVIDFFV 418
Query: 78 GMQVEVS 84
G Q +++
Sbjct: 419 GFQDDIT 425
>gi|345004458|ref|YP_004807311.1| PAS sensor protein [halophilic archaeon DL31]
gi|344320084|gb|AEN04938.1| PAS sensor protein [halophilic archaeon DL31]
Length = 400
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 46/71 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ET++ +V+ +R+AV +S L NY++DGT FWN +T+ P+ D G+T ++
Sbjct: 187 RFLQGEETEQAKVDSMREAVEATESVQVTLKNYRQDGTMFWNEVTLAPLHDAHGETNFYV 246
Query: 78 GMQVEVSKYTE 88
G Q + + E
Sbjct: 247 GFQQDATARKE 257
>gi|335424979|ref|ZP_08553972.1| hypothetical protein SSPSH_19791 [Salinisphaera shabanensis E1L3A]
gi|334887110|gb|EGM25449.1| hypothetical protein SSPSH_19791 [Salinisphaera shabanensis E1L3A]
Length = 333
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQ D ++R A+R G+ + + NY+KD TPFWN L+++PI + G FI
Sbjct: 54 RFLQNGRIDPESRAEMRAALRKGQGFSKVVTNYRKDDTPFWNELSISPIHTERGAVTHFI 113
Query: 78 GMQVEVSK 85
G Q +V++
Sbjct: 114 GFQKDVTQ 121
>gi|170719998|ref|YP_001747686.1| putative PAS/PAC sensor protein [Pseudomonas putida W619]
gi|169758001|gb|ACA71317.1| putative PAS/PAC sensor protein [Pseudomonas putida W619]
Length = 152
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 45/71 (63%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + D+ +IR A+ G+ L NY+KDG+ FWN L++TP+K D+ FI
Sbjct: 60 RFLQGDDRDQLARARIRKALAEGRPCREVLRNYRKDGSAFWNELSITPVKCDADHRTYFI 119
Query: 78 GMQVEVSKYTE 88
G+Q +VS+ E
Sbjct: 120 GIQKDVSRQVE 130
>gi|257053262|ref|YP_003131095.1| multi-sensor signal transduction histidine kinase [Halorhabdus
utahensis DSM 12940]
gi|256692025|gb|ACV12362.1| multi-sensor signal transduction histidine kinase [Halorhabdus
utahensis DSM 12940]
Length = 655
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 39/72 (54%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFL GP TD VE+I + V G++ ++ Y DG PFWN +T TPI D +G +
Sbjct: 353 RFLHGPATDPKTVERIGEHVERGETVTVEMITYTSDGRPFWNRMTATPITDATGAVTHVL 412
Query: 78 GMQVEVSKYTEG 89
G +V+ G
Sbjct: 413 GFHDDVTDRKRG 424
>gi|393766027|ref|ZP_10354584.1| signal transduction histidine kinase [Methylobacterium sp. GXF4]
gi|392728400|gb|EIZ85708.1| signal transduction histidine kinase [Methylobacterium sp. GXF4]
Length = 373
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQG TD+ V IR+AV + LLNY+KDG+ FWN L ++P+ +++G+ + F
Sbjct: 70 RLLQGENTDRGAVALIREAVTAQRDIAIDLLNYRKDGSSFWNALYLSPVANEAGEVLFFF 129
Query: 78 GMQVEVSKYTEG 89
Q++V+ +
Sbjct: 130 ASQLDVTDRVDA 141
>gi|433420630|ref|ZP_20405566.1| HTR-like protein, partial [Haloferax sp. BAB2207]
gi|432199115|gb|ELK55325.1| HTR-like protein, partial [Haloferax sp. BAB2207]
Length = 646
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD++ V ++R AV ++ LLNY+KDGT FWN + + P+ DD G F+
Sbjct: 307 RFLQGEATDEDAVAELRAAVDEREAVTTELLNYRKDGTEFWNRVRIAPLFDDDGVIDFFV 366
Query: 78 GMQVEVS 84
G Q +++
Sbjct: 367 GFQDDIT 373
>gi|332672276|ref|YP_004455284.1| putative PAS/PAC sensor protein [Cellulomonas fimi ATCC 484]
gi|332341314|gb|AEE47897.1| putative PAS/PAC sensor protein [Cellulomonas fimi ATCC 484]
Length = 594
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 43/67 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD + +R A+ G+ ++LNY++DGTPFWN L V ++D +G ++ +
Sbjct: 98 RFLQGTGTDLAAIGALRTALDEGRPATAQVLNYRRDGTPFWNRLVVAQVRDGAGGVVRRV 157
Query: 78 GMQVEVS 84
G+ +V+
Sbjct: 158 GVLTDVT 164
>gi|292656157|ref|YP_003536054.1| HTR-like protein [Haloferax volcanii DS2]
gi|448290154|ref|ZP_21481308.1| HTR-like protein [Haloferax volcanii DS2]
gi|291370178|gb|ADE02405.1| HTR-like protein [Haloferax volcanii DS2]
gi|445580156|gb|ELY34544.1| HTR-like protein [Haloferax volcanii DS2]
Length = 652
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD++ V ++R AV ++ LLNY+KDGT FWN + + P+ DD G F+
Sbjct: 230 RFLQGEATDEDAVAELRAAVDEREAVTTELLNYRKDGTEFWNRVRIAPLFDDDGVIDFFV 289
Query: 78 GMQVEVS 84
G Q +++
Sbjct: 290 GFQDDIT 296
>gi|448311685|ref|ZP_21501439.1| HTR-like protein [Natronolimnobius innermongolicus JCM 12255]
gi|445603716|gb|ELY57673.1| HTR-like protein [Natronolimnobius innermongolicus JCM 12255]
Length = 655
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +T V +R AV N +S L NY+ DGT FWN + + P+ DD+G F+
Sbjct: 241 RFLQGEQTRDEPVANLRAAVENRESVTVELRNYRADGTEFWNRVRIAPLFDDNGDIEYFV 300
Query: 78 GMQVEVSK---YTEGVNDKALRPNGL 100
G Q +V+K + E + +A R L
Sbjct: 301 GFQDDVTKKKTHEEQLRSQAARLEAL 326
>gi|435846163|ref|YP_007308413.1| PAS/PAC sensor hybrid histidine kinase [Natronococcus occultus SP4]
gi|433672431|gb|AGB36623.1| PAS/PAC sensor hybrid histidine kinase [Natronococcus occultus SP4]
Length = 634
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ET + V+++R A+ G+ LLNY++DG PFWN +TV P+ D T F+
Sbjct: 73 RFLQGDETAQEPVDRMRTAIDAGERVTVELLNYRRDGEPFWNRVTVAPLFDGDELT-HFV 131
Query: 78 GMQVEVSK 85
G+Q +V++
Sbjct: 132 GIQQDVTE 139
>gi|258654953|ref|YP_003204109.1| PAS/PAC sensor protein [Nakamurella multipartita DSM 44233]
gi|258558178|gb|ACV81120.1| putative PAS/PAC sensor protein [Nakamurella multipartita DSM
44233]
Length = 149
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKD-DSGKTIKF 76
RFLQGP+TD+ +V ++ +A+R + NY++DG+ FWN ++++PI + S + F
Sbjct: 68 RFLQGPDTDRAQVRRLHEAIRRHTDISVIIRNYRRDGSWFWNKVSISPIHEPGSDEVTHF 127
Query: 77 IGMQVEVSKYTE 88
IG Q++V+ E
Sbjct: 128 IGTQIDVTDLVE 139
>gi|46907030|ref|YP_013419.1| blue-light photoreceptor [Listeria monocytogenes serotype 4b str.
F2365]
gi|47094281|ref|ZP_00231987.1| blue-light photoreceptor [Listeria monocytogenes str. 4b H7858]
gi|226223417|ref|YP_002757524.1| hypothetical protein Lm4b_00815 [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|254823933|ref|ZP_05228934.1| blue-light photoreceptor [Listeria monocytogenes FSL J1-194]
gi|254853782|ref|ZP_05243130.1| blue-light photoreceptor [Listeria monocytogenes FSL R2-503]
gi|254931180|ref|ZP_05264539.1| blue-light photoreceptor [Listeria monocytogenes HPB2262]
gi|255521049|ref|ZP_05388286.1| hypothetical protein LmonocFSL_07461 [Listeria monocytogenes FSL
J1-175]
gi|300765106|ref|ZP_07075093.1| blue-light photoreceptor [Listeria monocytogenes FSL N1-017]
gi|386731553|ref|YP_006205049.1| hypothetical protein MUO_04255 [Listeria monocytogenes 07PF0776]
gi|404280352|ref|YP_006681250.1| blue-light photoreceptor [Listeria monocytogenes SLCC2755]
gi|404286210|ref|YP_006692796.1| blue-light photoreceptor [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|405749152|ref|YP_006672618.1| blue-light photoreceptor [Listeria monocytogenes ATCC 19117]
gi|405752017|ref|YP_006675482.1| blue-light photoreceptor [Listeria monocytogenes SLCC2378]
gi|405754878|ref|YP_006678342.1| blue-light photoreceptor [Listeria monocytogenes SLCC2540]
gi|406703574|ref|YP_006753928.1| blue-light photoreceptor [Listeria monocytogenes L312]
gi|417314863|ref|ZP_12101556.1| hypothetical protein LM1816_00900 [Listeria monocytogenes J1816]
gi|417317045|ref|ZP_12103671.1| hypothetical protein LM220_12877 [Listeria monocytogenes J1-220]
gi|424822524|ref|ZP_18247537.1| Blue-light photoreceptor [Listeria monocytogenes str. Scott A]
gi|46880296|gb|AAT03596.1| blue-light photoreceptor [Listeria monocytogenes serotype 4b str.
F2365]
gi|47017341|gb|EAL08168.1| blue-light photoreceptor [Listeria monocytogenes str. 4b H7858]
gi|225875879|emb|CAS04583.1| Hypothetical protein of unknown function [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|258607163|gb|EEW19771.1| blue-light photoreceptor [Listeria monocytogenes FSL R2-503]
gi|293582728|gb|EFF94760.1| blue-light photoreceptor [Listeria monocytogenes HPB2262]
gi|293593159|gb|EFG00920.1| blue-light photoreceptor [Listeria monocytogenes FSL J1-194]
gi|300514231|gb|EFK41291.1| blue-light photoreceptor [Listeria monocytogenes FSL N1-017]
gi|328467350|gb|EGF38430.1| hypothetical protein LM1816_00900 [Listeria monocytogenes J1816]
gi|328475504|gb|EGF46263.1| hypothetical protein LM220_12877 [Listeria monocytogenes J1-220]
gi|332311204|gb|EGJ24299.1| Blue-light photoreceptor [Listeria monocytogenes str. Scott A]
gi|384390311|gb|AFH79381.1| hypothetical protein MUO_04255 [Listeria monocytogenes 07PF0776]
gi|404218352|emb|CBY69716.1| blue-light photoreceptor [Listeria monocytogenes ATCC 19117]
gi|404221217|emb|CBY72580.1| blue-light photoreceptor [Listeria monocytogenes SLCC2378]
gi|404224078|emb|CBY75440.1| blue-light photoreceptor [Listeria monocytogenes SLCC2540]
gi|404226987|emb|CBY48392.1| blue-light photoreceptor [Listeria monocytogenes SLCC2755]
gi|404245139|emb|CBY03364.1| blue-light photoreceptor [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|406360604|emb|CBY66877.1| blue-light photoreceptor [Listeria monocytogenes L312]
Length = 253
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 45/68 (66%), Gaps = 3/68 (4%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLL-NYKKDGTPFWNLLTVTPIKDDSGKTIKF 76
FLQG +TDK EV KIR A+ N KS LL NY+KDGT F N LT+ PI DD + F
Sbjct: 57 HFLQGDDTDKKEVAKIRHAI-NEKSTANVLLKNYRKDGTSFMNELTIEPIYDDHNH-LYF 114
Query: 77 IGMQVEVS 84
+G+Q +V+
Sbjct: 115 VGIQKDVT 122
>gi|399911275|ref|ZP_10779589.1| PAS/PAC and GAF sensor-containing diguanylate
cyclase/phosphodiesterase [Halomonas sp. KM-1]
Length = 1328
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 16 CSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIK 75
CS FLQG ETD V + A+ + L NY+KDGTPFWN L + P++D G
Sbjct: 808 CS-FLQGSETDPEAVASMGKALAERREINVTLCNYRKDGTPFWNNLYLAPVRDGEGTVTH 866
Query: 76 FIGMQVEVSK 85
F+G+Q ++S+
Sbjct: 867 FVGIQHDISE 876
>gi|418062700|ref|ZP_12700460.1| signal transduction histidine kinase [Methylobacterium extorquens
DSM 13060]
gi|373563746|gb|EHP89914.1| signal transduction histidine kinase [Methylobacterium extorquens
DSM 13060]
Length = 492
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 40/67 (59%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPET+ +V +IRDA+ LLN+KKDG FWN L V+P+ D G F
Sbjct: 71 RFLQGPETNPYDVARIRDAIERRVPIEIELLNHKKDGEVFWNRLLVSPVFDRDGALTYFF 130
Query: 78 GMQVEVS 84
Q +V+
Sbjct: 131 ASQFDVT 137
>gi|16802841|ref|NP_464326.1| hypothetical protein lmo0799 [Listeria monocytogenes EGD-e]
gi|47097510|ref|ZP_00235050.1| blue-light photoreceptor [Listeria monocytogenes str. 1/2a F6854]
gi|254828883|ref|ZP_05233570.1| blue-light photoreceptor [Listeria monocytogenes FSL N3-165]
gi|254911482|ref|ZP_05261494.1| blue-light photoreceptor [Listeria monocytogenes J2818]
gi|254935808|ref|ZP_05267505.1| blue-light photoreceptor [Listeria monocytogenes F6900]
gi|255026935|ref|ZP_05298921.1| hypothetical protein LmonocytFSL_12466 [Listeria monocytogenes FSL
J2-003]
gi|255029467|ref|ZP_05301418.1| hypothetical protein LmonL_10883 [Listeria monocytogenes LO28]
gi|284801130|ref|YP_003412995.1| hypothetical protein LM5578_0879 [Listeria monocytogenes 08-5578]
gi|284994272|ref|YP_003416040.1| hypothetical protein LM5923_0834 [Listeria monocytogenes 08-5923]
gi|386043126|ref|YP_005961931.1| hypothetical protein [Listeria monocytogenes 10403S]
gi|386046461|ref|YP_005964793.1| blue-light photoreceptor [Listeria monocytogenes J0161]
gi|386049726|ref|YP_005967717.1| blue-light photoreceptor [Listeria monocytogenes FSL R2-561]
gi|386053063|ref|YP_005970621.1| blue-light photoreceptor [Listeria monocytogenes Finland 1998]
gi|404283239|ref|YP_006684136.1| blue-light photoreceptor [Listeria monocytogenes SLCC2372]
gi|404410038|ref|YP_006695626.1| blue-light photoreceptor [Listeria monocytogenes SLCC5850]
gi|404412882|ref|YP_006698469.1| blue-light photoreceptor [Listeria monocytogenes SLCC7179]
gi|405757794|ref|YP_006687070.1| blue-light photoreceptor [Listeria monocytogenes SLCC2479]
gi|20138928|sp|P58724.1|PHOT_LISMO RecName: Full=Blue-light photoreceptor; AltName: Full=Phototropin
homolog
gi|16410188|emb|CAC98877.1| lmo0799 [Listeria monocytogenes EGD-e]
gi|47014110|gb|EAL05103.1| blue-light photoreceptor [Listeria monocytogenes str. 1/2a F6854]
gi|258601296|gb|EEW14621.1| blue-light photoreceptor [Listeria monocytogenes FSL N3-165]
gi|258608395|gb|EEW21003.1| blue-light photoreceptor [Listeria monocytogenes F6900]
gi|284056692|gb|ADB67633.1| hypothetical protein LM5578_0879 [Listeria monocytogenes 08-5578]
gi|284059739|gb|ADB70678.1| hypothetical protein LM5923_0834 [Listeria monocytogenes 08-5923]
gi|293589425|gb|EFF97759.1| blue-light photoreceptor [Listeria monocytogenes J2818]
gi|345533452|gb|AEO02893.1| blue-light photoreceptor [Listeria monocytogenes J0161]
gi|345536360|gb|AEO05800.1| hypothetical protein LMRG_00488 [Listeria monocytogenes 10403S]
gi|346423572|gb|AEO25097.1| blue-light photoreceptor [Listeria monocytogenes FSL R2-561]
gi|346645714|gb|AEO38339.1| blue-light photoreceptor [Listeria monocytogenes Finland 1998]
gi|404229864|emb|CBY51268.1| blue-light photoreceptor [Listeria monocytogenes SLCC5850]
gi|404232741|emb|CBY54144.1| blue-light photoreceptor [Listeria monocytogenes SLCC2372]
gi|404235676|emb|CBY57078.1| blue-light photoreceptor [Listeria monocytogenes SLCC2479]
gi|404238581|emb|CBY59982.1| blue-light photoreceptor [Listeria monocytogenes SLCC7179]
gi|441470400|emb|CCQ20155.1| Blue-light photoreceptor [Listeria monocytogenes]
gi|441473535|emb|CCQ23289.1| Blue-light photoreceptor [Listeria monocytogenes N53-1]
Length = 253
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 46/68 (67%), Gaps = 3/68 (4%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLL-NYKKDGTPFWNLLTVTPIKDDSGKTIKF 76
FLQG +TDK EV KIR A+ N KS LL NY+KDGT F N LT+ PI DD + + F
Sbjct: 57 HFLQGDDTDKEEVAKIRHAI-NEKSTANVLLKNYRKDGTSFMNELTIEPIYDDH-EHLYF 114
Query: 77 IGMQVEVS 84
+G+Q +V+
Sbjct: 115 VGIQKDVT 122
>gi|149376152|ref|ZP_01893917.1| Two-component response regulator [Marinobacter algicola DG893]
gi|149359557|gb|EDM48016.1| Two-component response regulator [Marinobacter algicola DG893]
Length = 858
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 41/71 (57%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ET +E IR + + L+NY+KDGTPFWN L ++P+ + G FI
Sbjct: 349 RFLQGEETALEALETIRQGLHHQTEVNVELINYRKDGTPFWNHLRISPVFGNDGLCTHFI 408
Query: 78 GMQVEVSKYTE 88
G Q +V+ E
Sbjct: 409 GTQQDVTHQRE 419
>gi|424921468|ref|ZP_18344829.1| hypothetical protein I1A_000901 [Pseudomonas fluorescens R124]
gi|404302628|gb|EJZ56590.1| hypothetical protein I1A_000901 [Pseudomonas fluorescens R124]
Length = 158
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 45/67 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQ + D+ + +IR+ +RNG S +L NY+KDGTPFWN L+++ +K+ F+
Sbjct: 55 RFLQAGDRDQASLTRIREVLRNGGSCREKLRNYRKDGTPFWNELSLSTVKNADDGLTYFV 114
Query: 78 GMQVEVS 84
G+Q +V+
Sbjct: 115 GVQKDVT 121
>gi|422808886|ref|ZP_16857297.1| Blue-light photoreceptor [Listeria monocytogenes FSL J1-208]
gi|378752500|gb|EHY63085.1| Blue-light photoreceptor [Listeria monocytogenes FSL J1-208]
Length = 253
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 45/68 (66%), Gaps = 3/68 (4%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLL-NYKKDGTPFWNLLTVTPIKDDSGKTIKF 76
FLQG +TDK EV KIR A+ N KS LL NY+KDGT F N LT+ PI DD + F
Sbjct: 57 HFLQGDDTDKEEVAKIRHAI-NQKSTANVLLKNYRKDGTSFMNELTIEPIYDDHDH-LYF 114
Query: 77 IGMQVEVS 84
+G+Q +V+
Sbjct: 115 VGIQKDVT 122
>gi|407701326|ref|YP_006826113.1| sensory box protein [Alteromonas macleodii str. 'Black Sea 11']
gi|407250473|gb|AFT79658.1| sensory box protein [Alteromonas macleodii str. 'Black Sea 11']
Length = 580
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78
FLQG ETD+ V+ IR ++N +++ +LNY+KDGTP+W L++ P+ + K + FI
Sbjct: 301 FLQGEETDQRTVDVIRQKIKNREAFYDEILNYRKDGTPYWTSLSINPVFKEE-KLVNFIA 359
Query: 79 MQVEVSKYTEGVNDKALRPNGLSKSLI 105
+Q ++++ + D + + +L+
Sbjct: 360 VQADITRVKQMALDFTNKLKAIGSALV 386
>gi|428770095|ref|YP_007161885.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
[Cyanobacterium aponinum PCC 10605]
gi|428684374|gb|AFZ53841.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Cyanobacterium aponinum PCC 10605]
Length = 596
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 15/104 (14%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQGP TD+ ++++ +R GK + G +NY+KDGT F+N + PI + GK ++
Sbjct: 91 RILQGPNTDRTIFRELKNNLRKGKVFFGEAINYRKDGTEFYNQWHIEPIYNSEGKLTHYL 150
Query: 78 GMQVEVSKYTE---------------GVNDKALRPNGLSKSLIR 106
+Q +V++ E G+ ++ N L KSLI+
Sbjct: 151 AIQRDVTEKKEAEKKLIYDAFHDSLTGLYNRGWFLNELHKSLIK 194
>gi|407685085|ref|YP_006800259.1| sensory box protein [Alteromonas macleodii str. 'English Channel
673']
gi|407246696|gb|AFT75882.1| sensory box protein [Alteromonas macleodii str. 'English Channel
673']
Length = 580
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78
FLQG ETD+ V+ IR ++N +++ +LNY+KDGTP+W L++ P+ + K + FI
Sbjct: 301 FLQGEETDQRTVDVIRQKIKNREAFYDEILNYRKDGTPYWTSLSINPVFKEE-KLVNFIA 359
Query: 79 MQVEVSKYTEGVNDKALRPNGLSKSLI 105
+Q ++++ + D + + +L+
Sbjct: 360 VQADITRVKQMALDFTNKLKAIGSALV 386
>gi|224000493|ref|XP_002289919.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220975127|gb|EED93456.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 102
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 41/66 (62%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ET + +V IR AV G+ L+NY+ DGTPFWN L + ++D + FI
Sbjct: 37 RFLQGTETSREKVAMIRKAVSVGEDCNVTLVNYRSDGTPFWNSLFIAALRDAEDNIVNFI 96
Query: 78 GMQVEV 83
G+ V+V
Sbjct: 97 GVIVKV 102
>gi|448407789|ref|ZP_21573984.1| pas domain s-box [Halosimplex carlsbadense 2-9-1]
gi|445675039|gb|ELZ27574.1| pas domain s-box [Halosimplex carlsbadense 2-9-1]
Length = 648
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 64/127 (50%), Gaps = 5/127 (3%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD V +R + + ++NY+ DG+PFWN + + PI++D+G F+
Sbjct: 346 RFLQGEATDPETVATLRAGIEAHEPVSTEIVNYRADGSPFWNRVQLYPIENDAGTVTHFL 405
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRSQSHIRALS 137
G Q +V++ +A R L ++R++ + E+++T + + + A
Sbjct: 406 GFQDDVTE-----RKRAERLRALLNRVLRHNLGNDITPFMAFGEMLRTGEHDVADLGARI 460
Query: 138 LDTTNKL 144
D+ +L
Sbjct: 461 EDSAERL 467
>gi|406831765|ref|ZP_11091359.1| multi-sensor hybrid histidine kinase [Schlesneria paludicola DSM
18645]
Length = 819
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 7/83 (8%)
Query: 5 TGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLT 62
T KEL+G C R LQG TD V +IR+AV G+ L+NY+K+G FWN L
Sbjct: 354 TAKELVGKNC-----RMLQGELTDPAAVARIREAVHAGQGCTVELVNYRKNGKSFWNHLA 408
Query: 63 VTPIKDDSGKTIKFIGMQVEVSK 85
++ + D++ + + F+G+Q +V++
Sbjct: 409 LSAVFDENQQLVNFVGVQTDVTE 431
>gi|398404033|ref|XP_003853483.1| hypothetical protein MYCGRDRAFT_57829, partial [Zymoseptoria
tritici IPO323]
gi|339473365|gb|EGP88459.1| hypothetical protein MYCGRDRAFT_57829 [Zymoseptoria tritici IPO323]
Length = 556
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 41/67 (61%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP T+ N V ++ A GK + +NY++DG+PF NLL + P+ D G I
Sbjct: 250 RFLQGPRTNPNSVRRLAMACAAGKEHTEVFVNYRRDGSPFINLLMIAPLMDSRGVVRYNI 309
Query: 78 GMQVEVS 84
G QV+VS
Sbjct: 310 GAQVDVS 316
>gi|291566707|dbj|BAI88979.1| two-component response regulator [Arthrospira platensis NIES-39]
Length = 501
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 45/68 (66%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG E D+ ++ IR A+ + L NY++DGT FWN L ++P++++ G+ FI
Sbjct: 215 RFLQGNERDQPALDDIRQAIAEAEECRVILKNYRRDGTMFWNELFISPVRNEQGELTNFI 274
Query: 78 GMQVEVSK 85
G+Q +V++
Sbjct: 275 GIQTDVTE 282
>gi|398847346|ref|ZP_10604265.1| PAS domain S-box [Pseudomonas sp. GM84]
gi|398251676|gb|EJN36914.1| PAS domain S-box [Pseudomonas sp. GM84]
Length = 142
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQ + D+ +IR A+ G+ L NY+KDG+ FWN L++TP+K D+ + FI
Sbjct: 54 RFLQADDRDQLGRARIRKALAEGRPCREVLRNYRKDGSGFWNELSITPVKSDADQRTYFI 113
Query: 78 GMQVEVSKYTE 88
G+Q +VS+ E
Sbjct: 114 GIQKDVSRQVE 124
>gi|242345215|dbj|BAH80321.1| aureochrome2-like protein [Fucus distichus subsp. evanescens]
Length = 409
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD + V KIR + GK L YK DGT FWN + V ++++ K I ++
Sbjct: 293 RFLQGPDTDPDAVAKIRKGIEEGKDTSVFLRQYKADGTVFWNHVFVAALRNNDHKIINYV 352
Query: 78 GMQVEVSK 85
G+Q + K
Sbjct: 353 GIQHPLEK 360
>gi|170722401|ref|YP_001750089.1| PAS/PAC sensor-containing methyl-accepting chemotaxis sensory
transducer [Pseudomonas putida W619]
gi|169760404|gb|ACA73720.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
[Pseudomonas putida W619]
Length = 587
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78
LQGP T+ VE+I DA+RN + +LNYKK G +W L + P+ D G+ +FI
Sbjct: 302 LLQGPATNPETVERIADAIRNRRPIYNEILNYKKSGEHYWISLAINPVFGDQGELAQFIS 361
Query: 79 MQVEVSKYTE 88
+Q +++ E
Sbjct: 362 IQANITQTKE 371
>gi|46203570|ref|ZP_00051334.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
magnetotacticum MS-1]
Length = 425
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ T +E+IG C R LQGP+TD +R+A+ + +LNY+KDG FWN
Sbjct: 65 MTGYTREEVIGRNC----RLLQGPDTDPAARMAVREAIAQRRDIAIEILNYRKDGASFWN 120
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKY 86
L V+P+ + +G + G Q++++++
Sbjct: 121 ALFVSPVYNAAGDLVYLFGSQLDITRH 147
>gi|240140029|ref|YP_002964506.1| histidine kinase; HK, ATPase and sensory PAS domain
[Methylobacterium extorquens AM1]
gi|418061648|ref|ZP_12699494.1| signal transduction histidine kinase [Methylobacterium extorquens
DSM 13060]
gi|240010003|gb|ACS41229.1| Putative histidine kinase; putative HK, ATPase and sensory PAS
domain [Methylobacterium extorquens AM1]
gi|373564801|gb|EHP90884.1| signal transduction histidine kinase [Methylobacterium extorquens
DSM 13060]
Length = 354
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD + V +IR A+ + LLNY+KDG+ F N L ++P+ D+ G + +
Sbjct: 72 RFLQGPGTDFDAVARIRAAIDAERDVHEELLNYRKDGSTFHNALYISPVHDEDGTLLFYF 131
Query: 78 GMQVEVSK 85
Q +VS+
Sbjct: 132 ASQFDVSE 139
>gi|291566948|dbj|BAI89220.1| hypothetical protein [Arthrospira platensis NIES-39]
Length = 1276
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 45/72 (62%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ++D + ++R+A+ G+ L NY+ DG+ FWN L+++P+ + G FI
Sbjct: 382 RFLQGKDSDPKALAELRNAIEQGRECNIELQNYRPDGSSFWNELSISPVYNSQGFLTHFI 441
Query: 78 GMQVEVSKYTEG 89
G+Q ++S + +
Sbjct: 442 GIQTDISDHKQA 453
>gi|409992366|ref|ZP_11275561.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
[Arthrospira platensis str. Paraca]
gi|409936779|gb|EKN78248.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
[Arthrospira platensis str. Paraca]
Length = 1276
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 45/72 (62%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ++D + ++R+A+ G+ L NY+ DG+ FWN L+++P+ + G FI
Sbjct: 382 RFLQGKDSDPKALAELRNAIEQGRECNIELQNYRPDGSSFWNELSISPVYNSQGFLTHFI 441
Query: 78 GMQVEVSKYTEG 89
G+Q ++S + +
Sbjct: 442 GIQTDISDHKQA 453
>gi|336451390|ref|ZP_08621828.1| diguanylate cyclase (GGDEF) domain-containing protein [Idiomarina
sp. A28L]
gi|336281761|gb|EGN75033.1| diguanylate cyclase (GGDEF) domain-containing protein [Idiomarina
sp. A28L]
Length = 880
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 44/71 (61%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
+ LQG TD +E+IR+ ++ + + NY+KDGTPFWN L + P++D +G +I
Sbjct: 375 KVLQGEGTDSRAIEQIRNCLKKERDVQTIIRNYRKDGTPFWNDLYIAPVRDKNGVLTHYI 434
Query: 78 GMQVEVSKYTE 88
G+Q +V+ E
Sbjct: 435 GIQNDVTARKE 445
>gi|167647259|ref|YP_001684922.1| hypothetical protein Caul_3297 [Caulobacter sp. K31]
gi|167349689|gb|ABZ72424.1| signal transduction histidine kinase [Caulobacter sp. K31]
Length = 360
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG T + KIR AV G+ +LNY+KDG+ FWN L ++P+ D++G+ +
Sbjct: 78 RFLQGAGTSDAAIAKIRAAVAAGQECDVEILNYRKDGSDFWNQLHLSPVHDEAGQLLYIF 137
Query: 78 GMQVEVSKY 86
Q +VS +
Sbjct: 138 ASQRDVSDF 146
>gi|167035604|ref|YP_001670835.1| putative PAS/PAC sensor protein [Pseudomonas putida GB-1]
gi|166862092|gb|ABZ00500.1| putative PAS/PAC sensor protein [Pseudomonas putida GB-1]
Length = 142
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 45/71 (63%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQ + D+ +IR A+ G+ L NY+KDG+ FWN L++TP++ D+ + FI
Sbjct: 54 RFLQADDRDQLGRARIRKALAEGRPCREVLRNYRKDGSAFWNELSITPVRSDADQRTYFI 113
Query: 78 GMQVEVSKYTE 88
G+Q +VS+ E
Sbjct: 114 GIQKDVSRQVE 124
>gi|254416779|ref|ZP_05030529.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196176519|gb|EDX71533.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 653
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 74/142 (52%), Gaps = 5/142 (3%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ T E+IG RFLQGP+TD+ + +KIRD + + L+NY+KDG+ FW
Sbjct: 405 MTGYTSDEVIG---KTPRFLQGPKTDRAQADKIRDTLCRWEPVRAELINYRKDGSEFWVE 461
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
L + P+ D++G ++ ++ ++S+ + A R + L + + +E+ +
Sbjct: 462 LNIVPVVDENGDYTHWMAIERDISQRKQLETASAKRDQERTAQLSQANTLLQEQLVKQ-- 519
Query: 121 EVIQTVKRSQSHIRALSLDTTN 142
E + RS+ +A++L N
Sbjct: 520 EQMVANLRSREERQAIALKAGN 541
>gi|427409042|ref|ZP_18899244.1| PAS domain S-box protein [Sphingobium yanoikuyae ATCC 51230]
gi|425713352|gb|EKU76366.1| PAS domain S-box protein [Sphingobium yanoikuyae ATCC 51230]
Length = 866
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 37/100 (37%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ETD +V+ I DAV + + NY+K G PFWN L + P+ D +GK F
Sbjct: 78 RFLQGSETDPTDVQAIHDAVEAVRPIEIDIRNYRKCGEPFWNRLLLAPVFDGAGKLAYFF 137
Query: 78 GMQVEVS---KYTEGV-NDKALRPNGLSKSLIRYDARQKE 113
QV+V+ + EG+ N A+ ++ L R + +++E
Sbjct: 138 ASQVDVTLERERLEGLENSNAVLMAEITSRLQRQNEQERE 177
>gi|254562456|ref|YP_003069551.1| histidine kinase [Methylobacterium extorquens DM4]
gi|254269734|emb|CAX25706.1| Putative histidine kinase; putative HK, ATPase and sensory PAS
domain [Methylobacterium extorquens DM4]
Length = 354
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD + V +IR A+ + LLNY+KDG+ F N L ++P+ D+ G + +
Sbjct: 72 RFLQGPGTDFDAVARIRAAIDAERDVHEELLNYRKDGSTFHNALYISPVHDEDGTLLFYF 131
Query: 78 GMQVEVSK 85
Q +VS+
Sbjct: 132 ASQFDVSE 139
>gi|374622069|ref|ZP_09694597.1| sensory box protein [Ectothiorhodospira sp. PHS-1]
gi|373941198|gb|EHQ51743.1| sensory box protein [Ectothiorhodospira sp. PHS-1]
Length = 159
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQ + D+ + +IRDA+ G RL NY+KDG+ FWN L++TP+ +D + +I
Sbjct: 59 RFLQNDDRDQTALAQIRDAMERGIPCRVRLRNYRKDGSLFWNELSITPVFNDEDRLTYYI 118
Query: 78 GMQVEVSKYTEG 89
G+Q +++ E
Sbjct: 119 GIQKDITDQVEA 130
>gi|452207021|ref|YP_007487143.1| sensor box histidine kinase [Natronomonas moolapensis 8.8.11]
gi|452083121|emb|CCQ36406.1| sensor box histidine kinase [Natronomonas moolapensis 8.8.11]
Length = 723
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 42/68 (61%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD+ V+++R A+ + +LNY+ DG PFWN L + P+ D G+ F+
Sbjct: 307 RFLQGEGTDQRTVDRVRAALEAEEPVSVEILNYRADGEPFWNDLKIVPVTDGDGEVTHFL 366
Query: 78 GMQVEVSK 85
G Q ++++
Sbjct: 367 GFQDDITE 374
>gi|448584367|ref|ZP_21647241.1| HTR-like protein [Haloferax gibbonsii ATCC 33959]
gi|445728265|gb|ELZ79871.1| HTR-like protein [Haloferax gibbonsii ATCC 33959]
Length = 369
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78
FL GPETD V +IR A+ G+ + +Y DG PFWN L + P++DD FIG
Sbjct: 297 FLHGPETDPETVAEIRSAIDAGEPISAEIRSYDADGEPFWNHLDIQPVRDDEDALDFFIG 356
Query: 79 MQ 80
Sbjct: 357 FH 358
>gi|402072518|gb|EJT68290.1| hypothetical protein GGTG_14129 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 1036
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 41/67 (61%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD ++++ A+ K LLNYKK+ PFWNLL P+ D++G+ FI
Sbjct: 711 RFLQGAQTDPEAIKRLSMAIHERKETVELLLNYKKNKEPFWNLLYCAPLYDEAGELAFFI 770
Query: 78 GMQVEVS 84
G QV S
Sbjct: 771 GGQVNCS 777
>gi|357976441|ref|ZP_09140412.1| LuxR family transcriptional regulator [Sphingomonas sp. KC8]
Length = 191
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 40/72 (55%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFL GP T+ +I AVR + +LNYKKDGTPF N + V PI D +G F+
Sbjct: 45 RFLAGPRTEPGLTAEIVSAVREKRPVLVEILNYKKDGTPFRNAVLVAPIFDGNGDLEYFL 104
Query: 78 GMQVEVSKYTEG 89
G Q+EV G
Sbjct: 105 GSQMEVRPIDAG 116
>gi|404497929|ref|YP_006722035.1| sensor diguanylate cyclase/phosphodiesterase, PAS, PAS and PAS
domain-containing [Geobacter metallireducens GS-15]
gi|418067935|ref|ZP_12705262.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Geobacter metallireducens RCH3]
gi|78195532|gb|ABB33299.1| sensor diguanylate cyclase/phosphodiesterase, PAS, PAS and PAS
domain-containing [Geobacter metallireducens GS-15]
gi|373557889|gb|EHP84266.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Geobacter metallireducens RCH3]
Length = 905
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 45/69 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFL+G + D+ E++K+ A + + C L NY+KDG+PFWN L + P++D G +I
Sbjct: 381 RFLRGDDRDQAELKKLVQAFKEEREGCFVLRNYRKDGSPFWNELFIAPVRDRDGVVTNYI 440
Query: 78 GMQVEVSKY 86
G+ +++++
Sbjct: 441 GVMNDITEH 449
>gi|172038851|ref|YP_001805352.1| two-component response regulator [Cyanothece sp. ATCC 51142]
gi|354556166|ref|ZP_08975463.1| response regulator receiver modulated diguanylate cyclase
[Cyanothece sp. ATCC 51472]
gi|171700305|gb|ACB53286.1| two-component response regulator [Cyanothece sp. ATCC 51142]
gi|353551870|gb|EHC21269.1| response regulator receiver modulated diguanylate cyclase
[Cyanothece sp. ATCC 51472]
Length = 483
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 47/67 (70%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQ + + ++E+IR ++ G+ L NY+KDG+ FWN ++++PIKD+SGK I ++
Sbjct: 213 RFLQESDRQQPQLEEIRHCLQQGQPCHVTLRNYRKDGSLFWNEMSLSPIKDESGKIIYYL 272
Query: 78 GMQVEVS 84
+Q +V+
Sbjct: 273 AVQTDVT 279
>gi|397569305|gb|EJK46660.1| hypothetical protein THAOC_34663 [Thalassiosira oceanica]
Length = 211
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ET K +V++IR A+++ LLNYKKDGT F N + P++D +T +I
Sbjct: 124 RFLQGSETRKEDVDRIRSAIKSQTEASVNLLNYKKDGTAFNNQFFLAPLRDADERTAYYI 183
Query: 78 GMQVEVSKYTEG 89
G+Q V + G
Sbjct: 184 GVQCSVKRLGPG 195
>gi|219126126|ref|XP_002183315.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405071|gb|EEC45015.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 120
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ET + +V +IR + G+ L+NY DGTPFWN L + ++D + FI
Sbjct: 55 RFLQGTETSQEKVNQIRKNLSEGEDVTVTLMNYTADGTPFWNKLFIAALRDAQNNIVNFI 114
Query: 78 GMQVEV 83
G+ V+V
Sbjct: 115 GVIVKV 120
>gi|398862633|ref|ZP_10618225.1| PAS domain S-box [Pseudomonas sp. GM78]
gi|398250172|gb|EJN35520.1| PAS domain S-box [Pseudomonas sp. GM78]
Length = 154
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 47/68 (69%), Gaps = 2/68 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLL-NYKKDGTPFWNLLTVTPIKDDSGKTIKF 76
RFLQ + D+ + KIRDA+ N + C +L NY+KDGTPFWN L+++ +K+ + + F
Sbjct: 55 RFLQSGDRDQEALSKIRDAL-NSEGACREILRNYRKDGTPFWNELSLSTVKNPNDGQVYF 113
Query: 77 IGMQVEVS 84
IG+Q +V+
Sbjct: 114 IGVQKDVT 121
>gi|149286424|gb|ABR23227.1| hisactophilin/phototropin PHY3 fusion protein [Expression vector
pNCO-HISACT-ACVLOV2-syn]
Length = 234
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
+++ T +E++G C RFLQG TD+ V+ IRDAV+ + ++LNY K G FWNL
Sbjct: 155 LTEYTREEVLGNN--C-RFLQGRGTDRKAVQLIRDAVKEQRDVTVQVLNYTKGGRAFWNL 211
Query: 61 LTVTPIKDDSGKTIKFIGMQVEV 83
+ ++D++G FIG+Q E+
Sbjct: 212 FHLQVMRDENGDVQYFIGVQQEM 234
>gi|448584371|ref|ZP_21647245.1| HTR-like protein [Haloferax gibbonsii ATCC 33959]
gi|445728269|gb|ELZ79875.1| HTR-like protein [Haloferax gibbonsii ATCC 33959]
Length = 716
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ETD+ V ++R AV + LLNY+KDGT FWN + + PI DD G F+
Sbjct: 314 RFLQGEETDEAAVAELRAAVDEREPVTTELLNYRKDGTEFWNRVRIAPIFDD-GSVDLFV 372
Query: 78 GMQVEVS 84
G Q +++
Sbjct: 373 GFQDDIT 379
>gi|119490653|ref|ZP_01623058.1| regulatory components of sensory transduction system [Lyngbya sp.
PCC 8106]
gi|119453818|gb|EAW34975.1| regulatory components of sensory transduction system [Lyngbya sp.
PCC 8106]
Length = 477
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 47/68 (69%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + D+ ++ IR+A++N + + NY+KDGT FWN ++++P++D G +I
Sbjct: 208 RFLQGEDRDQPNLDIIRNALKNDEDCLVIIRNYRKDGTLFWNEVSISPVRDAGGNITHYI 267
Query: 78 GMQVEVSK 85
G+Q ++++
Sbjct: 268 GIQSDITE 275
>gi|383316019|ref|YP_005376861.1| PAS domain-containing protein [Frateuria aurantia DSM 6220]
gi|379043123|gb|AFC85179.1| PAS domain S-box [Frateuria aurantia DSM 6220]
Length = 576
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 62/121 (51%)
Query: 20 LQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGM 79
LQG TD V +IR ++ GK+ +LNY++DG+P+W + + P+ D +G IK++G+
Sbjct: 303 LQGAHTDPVTVARIRSSLAAGKALYEEILNYRRDGSPYWASMVINPVHDSAGLVIKYVGV 362
Query: 80 QVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRSQSHIRALSLD 139
++ D +R + ++ + + + L + + Q + + Q +R SL
Sbjct: 363 MSNITDSKSRAMDDHVRLQAIGRTSLVAEWSLSGECLQANPLLRQQLGQVQGDLRLESLP 422
Query: 140 T 140
T
Sbjct: 423 T 423
>gi|313126511|ref|YP_004036781.1| pas domain s-box [Halogeometricum borinquense DSM 11551]
gi|448286665|ref|ZP_21477890.1| pas domain s-box [Halogeometricum borinquense DSM 11551]
gi|312292876|gb|ADQ67336.1| PAS domain S-box [Halogeometricum borinquense DSM 11551]
gi|445574042|gb|ELY28551.1| pas domain s-box [Halogeometricum borinquense DSM 11551]
Length = 648
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 7/89 (7%)
Query: 15 LCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTI 74
LC FLQG +TD +++ A+ G+ L+NY++DGTPFWN + + P+ D +G
Sbjct: 345 LC--FLQGEQTDPERSQRLETAIDAGEPVVVELINYRRDGTPFWNQIYLAPVDDKTGAIT 402
Query: 75 KFIGMQVEVS--KYTE---GVNDKALRPN 98
++G Q +V+ K TE V ++ LR N
Sbjct: 403 HYVGFQQDVTERKRTEQLIQVLNRVLRHN 431
>gi|85373423|ref|YP_457485.1| hypothetical protein ELI_02980 [Erythrobacter litoralis HTCC2594]
gi|123409698|sp|Q2NCA3.1|LVHK1_ERYLH RecName: Full=Blue-light-activated histidine kinase 1; AltName:
Full=EL360-LOV-histidine kinase; Short=EL360-LOV-HK
gi|84786506|gb|ABC62688.1| sensory box histidine kinase [Erythrobacter litoralis HTCC2594]
Length = 360
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 40/67 (59%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD +V K+R+ + + LLNY+KDG PFWN + V PI + G F
Sbjct: 86 RFLQGADTDPEQVRKLREGIAAERYTVVDLLNYRKDGIPFWNAVHVGPIYGEDGTLQYFY 145
Query: 78 GMQVEVS 84
G Q +++
Sbjct: 146 GSQWDIT 152
>gi|322435708|ref|YP_004217920.1| PAS/PAC sensor signal transduction histidine kinase [Granulicella
tundricola MP5ACTX9]
gi|321163435|gb|ADW69140.1| PAS/PAC sensor signal transduction histidine kinase [Granulicella
tundricola MP5ACTX9]
Length = 507
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 46/71 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQ ET++ + IR+A+ G+ L NY+KDGT FWN L+++PI++ G+ F+
Sbjct: 199 RFLQKGETEQPGLTLIREALAAGREVVAILRNYRKDGTVFWNELSLSPIRNRDGELTHFV 258
Query: 78 GMQVEVSKYTE 88
G+Q +V+ E
Sbjct: 259 GIQNDVTSRVE 269
>gi|308174707|ref|YP_003921412.1| blue light GTP-binding receptor [Bacillus amyloliquefaciens DSM 7]
gi|384160548|ref|YP_005542621.1| blue light GTP-binding receptor [Bacillus amyloliquefaciens TA208]
gi|384165490|ref|YP_005546869.1| blue light GTP-binding receptor [Bacillus amyloliquefaciens LL3]
gi|384169636|ref|YP_005551014.1| blue light GTP-binding receptor [Bacillus amyloliquefaciens XH7]
gi|307607571|emb|CBI43942.1| blue light GTP-binding receptor [Bacillus amyloliquefaciens DSM 7]
gi|328554636|gb|AEB25128.1| blue light GTP-binding receptor [Bacillus amyloliquefaciens TA208]
gi|328913045|gb|AEB64641.1| blue light GTP-binding receptor [Bacillus amyloliquefaciens LL3]
gi|341828915|gb|AEK90166.1| blue light GTP-binding receptor [Bacillus amyloliquefaciens XH7]
Length = 261
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 7/89 (7%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ + +E++G C RFLQG ETD+ +V KIR ++++ + RL N KKDGTPFWN
Sbjct: 49 MTGYSSEEILGKNC----RFLQGKETDRKQVAKIRKSLKHKEKITVRLKNVKKDGTPFWN 104
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTE 88
L + P+ + + F+G Q ++++ E
Sbjct: 105 ELNIDPLYVED--KLYFVGFQKDITEQKE 131
>gi|254505056|ref|ZP_05117207.1| hypothetical protein SADFL11_5096 [Labrenzia alexandrii DFL-11]
gi|222441127|gb|EEE47806.1| hypothetical protein SADFL11_5096 [Labrenzia alexandrii DFL-11]
Length = 124
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 39/66 (59%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPET+ +E IR ++ + +LNY+KDG PF N L + PI D G+ I F
Sbjct: 59 RFLQGPETNPFAIEAIRQGLKAQTRFTIDILNYRKDGMPFMNRLRIRPIIDGDGRLIFFA 118
Query: 78 GMQVEV 83
G Q V
Sbjct: 119 GAQNPV 124
>gi|409991969|ref|ZP_11275188.1| response regulator receiver modulated diguanylate cyclase
[Arthrospira platensis str. Paraca]
gi|409937163|gb|EKN78608.1| response regulator receiver modulated diguanylate cyclase
[Arthrospira platensis str. Paraca]
Length = 502
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 45/68 (66%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG E D+ ++ IR A+ + L NY++DGT FWN L ++P++++ G+ FI
Sbjct: 216 RFLQGNERDQPALDDIRRAIAEAEECRVILKNYRRDGTMFWNELFISPVRNEQGELTNFI 275
Query: 78 GMQVEVSK 85
G+Q +V++
Sbjct: 276 GIQTDVTE 283
>gi|424923125|ref|ZP_18346486.1| hypothetical protein I1A_002574 [Pseudomonas fluorescens R124]
gi|404304285|gb|EJZ58247.1| hypothetical protein I1A_002574 [Pseudomonas fluorescens R124]
Length = 153
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 49/73 (67%), Gaps = 2/73 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLL-NYKKDGTPFWNLLTVTPIKDDSGKTIKF 76
RFLQG + D+ + IR+A+ N + C +++ NY+KDG+ FWN L++TP+ +D+ + +
Sbjct: 54 RFLQGDDRDQPSLVAIREAIENFQP-CRQIIRNYRKDGSAFWNELSITPVFNDADQLTYY 112
Query: 77 IGMQVEVSKYTEG 89
IG+Q +VS E
Sbjct: 113 IGIQKDVSIQVEA 125
>gi|310639274|ref|YP_003944033.1| signal transduction histidine kinase [Ketogulonicigenium vulgare
Y25]
gi|385235391|ref|YP_005796731.1| putative sensory transduction histidine kinase of the HWE family
protein [Ketogulonicigenium vulgare WSH-001]
gi|308752850|gb|ADO43994.1| signal transduction histidine kinase [Ketogulonicigenium vulgare
Y25]
gi|343464086|gb|AEM42520.1| putative sensory transduction histidine kinase of the HWE family
protein [Ketogulonicigenium vulgare WSH-001]
Length = 483
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 43/67 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP T++ ++ ++R A+ + + LLNY+KDG+ FWN L V+P+ G+ + F
Sbjct: 69 RFLQGPGTNRGDIARLRTAIADRQPIELDLLNYRKDGSSFWNRLVVSPVFAGDGQALYFT 128
Query: 78 GMQVEVS 84
Q ++S
Sbjct: 129 ASQFDIS 135
>gi|218531536|ref|YP_002422352.1| signal transduction histidine kinase [Methylobacterium extorquens
CM4]
gi|218523839|gb|ACK84424.1| signal transduction histidine kinase [Methylobacterium extorquens
CM4]
Length = 354
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD + V +IR A+ + LLNY+KDG+ F N L ++P+ D+ G + +
Sbjct: 72 RFLQGPGTDFDAVARIRAAIDAERDVHEELLNYRKDGSTFHNALYISPVHDEDGTLLFYF 131
Query: 78 GMQVEVS 84
Q +VS
Sbjct: 132 ASQFDVS 138
>gi|452752745|ref|ZP_21952485.1| Sensory box histidine kinase [alpha proteobacterium JLT2015]
gi|451959817|gb|EMD82233.1| Sensory box histidine kinase [alpha proteobacterium JLT2015]
Length = 345
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 42/79 (53%)
Query: 5 TGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVT 64
TG C RFLQG T + V IR+ + + LLNY+ DGT FWN L +
Sbjct: 56 TGYAKESCVGRNCRFLQGANTHPDAVAAIREGIEKEREVNVDLLNYRADGTEFWNRLLLA 115
Query: 65 PIKDDSGKTIKFIGMQVEV 83
P+ DD G+ F+G+Q E+
Sbjct: 116 PLFDDDGELAYFMGIQHEL 134
>gi|407699007|ref|YP_006823794.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii str.
'Black Sea 11']
gi|407248154|gb|AFT77339.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii str.
'Black Sea 11']
Length = 959
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 71/130 (54%), Gaps = 10/130 (7%)
Query: 7 KELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI 66
+E+IG C R +QG ET+K+ V++IR AV + LLNYKKDG+ F+N L +TP+
Sbjct: 481 EEIIGHN--C-RSMQGEETNKHTVDQIRKAVATREPIETTLLNYKKDGSTFYNRLNLTPV 537
Query: 67 KDDSGKTIKFIGMQVEVS------KYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
K + G+ +IG Q +V+ +Y + +KA L S + + + + I+
Sbjct: 538 KIN-GEVTHYIGFQQDVTQQRQTEQYLQEAREKAEESARLKSSFLASMSHEIRTPIHGIS 596
Query: 121 EVIQTVKRSQ 130
V+Q + S+
Sbjct: 597 GVLQLMASSE 606
>gi|409425687|ref|ZP_11260270.1| putative PAS/PAC sensor protein [Pseudomonas sp. HYS]
Length = 153
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQ + D++ IR A+++G L NY+KDG+ FWN L++TP+ +++ K FI
Sbjct: 55 RFLQNDDRDQSARALIRQAIKDGLPSREILRNYRKDGSAFWNELSITPVLNEADKRKYFI 114
Query: 78 GMQVEVSKYTEG 89
G+Q +VS+ E
Sbjct: 115 GIQKDVSRQVEA 126
>gi|163852695|ref|YP_001640738.1| PAS sensor protein [Methylobacterium extorquens PA1]
gi|163664300|gb|ABY31667.1| PAS sensor protein [Methylobacterium extorquens PA1]
Length = 354
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP TD + V +IR A+ + LLNY+KDG+ F N L ++P+ D+ G + +
Sbjct: 72 RFLQGPGTDFDAVARIRAAIDAERDVHEELLNYRKDGSTFHNALYISPVHDEDGTLLFYF 131
Query: 78 GMQVEVS 84
Q +VS
Sbjct: 132 ASQFDVS 138
>gi|443469322|ref|ZP_21059495.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
[Pseudomonas pseudoalcaligenes KF707]
gi|443473235|ref|ZP_21063260.1| Methyl-accepting chemotaxis protein I (serine chemoreceptor
protein) [Pseudomonas pseudoalcaligenes KF707]
gi|442898695|gb|ELS25324.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
[Pseudomonas pseudoalcaligenes KF707]
gi|442903798|gb|ELS29089.1| Methyl-accepting chemotaxis protein I (serine chemoreceptor
protein) [Pseudomonas pseudoalcaligenes KF707]
Length = 463
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78
FLQGP TD V +IRD +RN + +LNY K G +W L + PI + +G+ +FI
Sbjct: 178 FLQGPATDMETVAQIRDGLRNNRPIYNEILNYGKTGEHYWISLAINPIFNAAGEVEQFIS 237
Query: 79 MQVEVSKYTE 88
+Q +++ E
Sbjct: 238 IQANITQTKE 247
>gi|453089069|gb|EMF17109.1| hypothetical protein SEPMUDRAFT_36344 [Mycosphaerella populorum
SO2202]
Length = 640
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 40/67 (59%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP + + V ++ A G+ + +NY++DG+PF NLL P+ D G FI
Sbjct: 262 RFLQGPRSSPHSVRRLAMATSEGREHSEVFVNYRRDGSPFMNLLMTAPLLDSRGNIRYFI 321
Query: 78 GMQVEVS 84
G QV+VS
Sbjct: 322 GAQVDVS 328
>gi|119896627|ref|YP_931840.1| PAS/PAC/GGDEF-domain-containing protein [Azoarcus sp. BH72]
gi|119669040|emb|CAL92953.1| PAS/PAC/GGDEF-domain containing protein [Azoarcus sp. BH72]
Length = 420
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 53/87 (60%), Gaps = 9/87 (10%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPF--- 57
M+ ++LIG R LQGP+TD ++++R A+R+G + G +NY++DG+ +
Sbjct: 44 MTGYAAEDLIGQS---PRILQGPDTDPEVIDRLRTALRSGSFFEGATVNYRRDGSAYDVE 100
Query: 58 WNLLTVTPIKDDSGKTIKFIGMQVEVS 84
WN ++P++DD G+ F+ +Q +S
Sbjct: 101 WN---ISPVRDDGGELSHFVSVQHNIS 124
>gi|352105826|ref|ZP_08960990.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Halomonas sp. HAL1]
gi|350598249|gb|EHA14372.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Halomonas sp. HAL1]
Length = 709
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 46/71 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ++D +E+IR A+ + L NY+ DGT FWN L+++P+ ++SG FI
Sbjct: 202 RFLQGEDSDPMAIEEIRRAIVQQQDVQVLLCNYRFDGTLFWNQLSISPVFNNSGVCTHFI 261
Query: 78 GMQVEVSKYTE 88
G+Q ++++ E
Sbjct: 262 GIQQDITRQRE 272
>gi|430762223|ref|YP_007218080.1| sensory box protein [Thioalkalivibrio nitratireducens DSM 14787]
gi|430011847|gb|AGA34599.1| sensory box protein [Thioalkalivibrio nitratireducens DSM 14787]
Length = 150
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 45/67 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD+ V +IR A+ G+ L NY+KDG+ FWN L++TP+ +D + +I
Sbjct: 57 RFLQGTDTDQEGVREIRAALDAGRPCRVVLRNYRKDGSMFWNELSITPVYNDDDQLTYYI 116
Query: 78 GMQVEVS 84
G+Q +++
Sbjct: 117 GIQKDIT 123
>gi|28868554|ref|NP_791173.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato
str. DC3000]
gi|28851792|gb|AAO54868.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato
str. DC3000]
Length = 425
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ T +ELIG L R LQG +TD +E++R + + G +NY+ DG+P+
Sbjct: 46 MTGYTAEELIG---LSPRILQGADTDPQVIERLRQCLSERLFFEGSTVNYRADGSPYVVE 102
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSL 104
+TP++DD+G+ F+ +Q +S ++ L L+ +
Sbjct: 103 WKITPVRDDAGQVCNFVSVQQNISPRIRAEREQHLLAQALNAAF 146
>gi|448560681|ref|ZP_21634129.1| bacterio-opsin activator [Haloferax prahovense DSM 18310]
gi|445722331|gb|ELZ73994.1| bacterio-opsin activator [Haloferax prahovense DSM 18310]
Length = 658
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 21/119 (17%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R+LQGP TD V ++R A+ +S LLNY+ +G FWN + V P+ G+ ++
Sbjct: 182 RYLQGPNTDPERVAELRRAIEAEESASVELLNYRANGETFWNRVDVAPLSGPDGEVTHYV 241
Query: 78 GMQVEVS----------KYTEGVNDKALRPNGL-----------SKSLIRYDARQKEKA 115
G Q +++ +Y E V+++ R L + +L+R ++RQ+ +A
Sbjct: 242 GFQTDITERVRAETAAERYAERVDEERERLQTLVEHIEGLLADVTSALVRAESRQELEA 300
>gi|315498235|ref|YP_004087039.1| pas/pac sensor hybrid histidine kinase [Asticcacaulis excentricus
CB 48]
gi|315416247|gb|ADU12888.1| PAS/PAC sensor hybrid histidine kinase [Asticcacaulis excentricus
CB 48]
Length = 596
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 14/103 (13%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD + + A+R+ + N++KDGT FWN L V+PI D GK + +
Sbjct: 151 RFLQGEGTDPQMIANLSRAIRDRTDIAVEIQNFRKDGTAFWNALFVSPIFDRDGKLLYYF 210
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
G Q++V++ E + ALR QK +A+G +T
Sbjct: 211 GSQLDVTRRREA--EMALR------------RAQKMEAIGQLT 239
>gi|448490617|ref|ZP_21608075.1| histidine kinase [Halorubrum californiensis DSM 19288]
gi|445693735|gb|ELZ45877.1| histidine kinase [Halorubrum californiensis DSM 19288]
Length = 507
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 5/121 (4%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T +IR A+ + +LNY+ +G FWN L++ P++D +G+ ++
Sbjct: 221 RFLQGPDTGDEPRARIRRALDEDRPVEVDILNYRANGQKFWNRLSIAPLRDAAGEVTGYV 280
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRSQSHIRALS 137
G Q E+++ + ++ L G ++ ++ R K + T+++Q +S R+L
Sbjct: 281 GFQSEITE--RKIRERRLEVMG---RVLNHNLRNKMNLIEGYTDLLQGDPDEESRRRSLD 335
Query: 138 L 138
+
Sbjct: 336 I 336
>gi|148549691|ref|YP_001269793.1| putative PAS/PAC sensor protein [Pseudomonas putida F1]
gi|395445362|ref|YP_006385615.1| putative PAS/PAC sensor protein [Pseudomonas putida ND6]
gi|397694315|ref|YP_006532196.1| PAS/PAC sensor protein [Pseudomonas putida DOT-T1E]
gi|421522947|ref|ZP_15969587.1| putative PAS/PAC sensor protein [Pseudomonas putida LS46]
gi|148513749|gb|ABQ80609.1| putative PAS/PAC sensor protein [Pseudomonas putida F1]
gi|388559359|gb|AFK68500.1| putative PAS/PAC sensor protein [Pseudomonas putida ND6]
gi|397331045|gb|AFO47404.1| putative PAS/PAC sensor protein [Pseudomonas putida DOT-T1E]
gi|402753440|gb|EJX13934.1| putative PAS/PAC sensor protein [Pseudomonas putida LS46]
Length = 142
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQ + D+ +IR A+ G+ L NY+KDG+ FWN L++TP+K D + FI
Sbjct: 54 RFLQADDRDQLGRARIRKAMAEGRPCREVLRNYRKDGSAFWNELSITPVKSDFDQRTYFI 113
Query: 78 GMQVEVSKYTE 88
G+Q +VS+ E
Sbjct: 114 GIQKDVSRQVE 124
>gi|159487329|ref|XP_001701675.1| predicted protein [Chlamydomonas reinhardtii]
gi|158280894|gb|EDP06650.1| predicted protein [Chlamydomonas reinhardtii]
Length = 104
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDS-GKTIKF 76
RFLQG TD V ++ A+ GKS +LLNYKK+G PF N L++TPI D + G+ +
Sbjct: 37 RFLQGEGTDSQPVLDLKKAISEGKSCVVQLLNYKKNGDPFVNYLSLTPIHDAATGRLTHY 96
Query: 77 IGMQVEVS 84
+G+Q +++
Sbjct: 97 VGVQSDIT 104
>gi|240138252|ref|YP_002962724.1| hypothetical protein MexAM1_META1p1588 [Methylobacterium extorquens
AM1]
gi|240008221|gb|ACS39447.1| Hypothetical protein MexAM1_META1p1588 [Methylobacterium extorquens
AM1]
Length = 336
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 12/137 (8%)
Query: 5 TGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVT 64
TG E RFLQGP TD+ ++ +R A++ G+ G LNY+KDGT + +T
Sbjct: 53 TGYEAEEVLGRSPRFLQGPGTDRAVLDGLRAAMKAGEMAQGEALNYRKDGTTYVVEWLIT 112
Query: 65 PIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQ 124
P++D G+ ++ Q +V+ G + +AL L+R + + L ++ V+
Sbjct: 113 PVRDTEGRITHWVSAQRDVTGRRAGEDRQAL--------LVRELHHRVKNTLATVQAVLN 164
Query: 125 TVKRSQSHI----RALS 137
RS + RALS
Sbjct: 165 ATMRSSLSVSEFTRALS 181
>gi|220934602|ref|YP_002513501.1| sensory box protein [Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|219995912|gb|ACL72514.1| sensory box protein [Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 148
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQ + D+ +++IR+A++ GK + NYK+DGT FWN L++TP+ +D + +I
Sbjct: 59 RFLQKGDRDQEGLKQIREAIKAGKPCRVVVRNYKRDGTLFWNELSITPVYNDQDQLTYYI 118
Query: 78 GMQVEVSK--YTEGVNDKALR 96
G+Q +V+ E D+ALR
Sbjct: 119 GIQKDVTDRVVAEQQRDEALR 139
>gi|116753699|ref|YP_842817.1| multi-sensor hybrid histidine kinase [Methanosaeta thermophila PT]
gi|116665150|gb|ABK14177.1| multi-sensor hybrid histidine kinase [Methanosaeta thermophila PT]
Length = 1692
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 46/67 (68%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78
FL+GPETD++++ +I +AVRN + L+NY+KDG+ FW L + P++D G+ ++
Sbjct: 883 FLEGPETDRSKIMEILEAVRNAQPVNQELVNYRKDGSRFWVELNIFPVRDHMGEVTHWVS 942
Query: 79 MQVEVSK 85
+Q + ++
Sbjct: 943 IQRDTTE 949
>gi|448466718|ref|ZP_21599223.1| light- and oxygen-sensing histidine kinase [Halorubrum kocurii JCM
14978]
gi|445813578|gb|EMA63555.1| light- and oxygen-sensing histidine kinase [Halorubrum kocurii JCM
14978]
Length = 913
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 43/68 (63%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP +D ++IR A+ + +L NY +G P+W L+VTP++D +G +I
Sbjct: 248 RFLQGPGSDSETTKRIRTAIETERPITTKLRNYTAEGEPYWAKLSVTPVRDANGIVTNYI 307
Query: 78 GMQVEVSK 85
G+Q ++++
Sbjct: 308 GVQHDITE 315
>gi|42570655|ref|NP_973401.1| protein TWIN LOV 1 [Arabidopsis thaliana]
gi|330250518|gb|AEC05612.1| protein TWIN LOV 1 [Arabidopsis thaliana]
Length = 358
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI--KDDSGKTIK 75
+ QGP+T++ + +IR+A+R +S LLNY+K G+PFW L + P+ KDD GK
Sbjct: 75 KVFQGPKTNRRSIMEIREAIREERSVQVSLLNYRKSGSPFWMLFHMCPVFGKDD-GKVTN 133
Query: 76 FIGMQVEVS 84
F+ +QV +S
Sbjct: 134 FVAVQVPIS 142
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 43/60 (71%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFL G +TD + + ++++ + G+S ++LNY+KD + FWNLL ++P+++ SGK I ++
Sbjct: 297 RFLSGVDTDSSVLYEMKECILKGQSCTVQILNYRKDKSSFWNLLHISPVRNASGKHILWV 356
>gi|258654481|ref|YP_003203637.1| PAS/PAC sensor protein [Nakamurella multipartita DSM 44233]
gi|258557706|gb|ACV80648.1| putative PAS/PAC sensor protein [Nakamurella multipartita DSM
44233]
Length = 365
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQ D +E IR A+ NG + + N+++DG FWN ++P+++ +G+ +I
Sbjct: 285 RFLQAESGDPHERSAIRSAIANGDAVTTLIRNFRQDGHAFWNEFHLSPVRNGAGRVTHYI 344
Query: 78 GMQVEVSKYTE 88
G Q++V++ E
Sbjct: 345 GYQLDVTERVE 355
>gi|315281465|ref|ZP_07870085.1| blue-light photoreceptor [Listeria marthii FSL S4-120]
gi|313614889|gb|EFR88413.1| blue-light photoreceptor [Listeria marthii FSL S4-120]
Length = 253
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
FLQG +TDK EV KIR A+ + L NY+KDGT F N LT+ PI DD+ + + F+
Sbjct: 57 HFLQGDDTDKEEVAKIRQAIDQKSTANVLLKNYRKDGTSFMNELTIEPIYDDN-EHLYFV 115
Query: 78 GMQVEVS 84
G+Q +V+
Sbjct: 116 GIQKDVT 122
>gi|344211121|ref|YP_004795441.1| HTR-like protein [Haloarcula hispanica ATCC 33960]
gi|343782476|gb|AEM56453.1| HTR-like protein [Haloarcula hispanica ATCC 33960]
Length = 726
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 41/68 (60%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQG TD V +RDA+ + L NY+K+GT FWN + + P++DD G + ++
Sbjct: 320 RMLQGENTDPESVATMRDAIDAEERVTVELRNYRKNGTEFWNRVRIAPVRDDDGAVVNYV 379
Query: 78 GMQVEVSK 85
G Q ++++
Sbjct: 380 GFQQDITE 387
>gi|219847764|ref|YP_002462197.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM
9485]
gi|219542023|gb|ACL23761.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM
9485]
Length = 1207
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 42/70 (60%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78
LQGPETD+ V I A+RNG+S +LNY K+G P+W L ++P+ D+ FI
Sbjct: 255 LLQGPETDQETVAAISRAIRNGESIKTEILNYTKNGHPYWLSLDISPVYDEQHHLTHFIA 314
Query: 79 MQVEVSKYTE 88
++ +++ E
Sbjct: 315 IESDITHQKE 324
>gi|448374219|ref|ZP_21558104.1| bacterio-opsin activator [Halovivax asiaticus JCM 14624]
gi|445660896|gb|ELZ13691.1| bacterio-opsin activator [Halovivax asiaticus JCM 14624]
Length = 674
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD + K+R A+ + L NY+ DG FWN + + P+ +D G+ F+
Sbjct: 199 RFLQGPETDLEAIAKLRAAIDAAEPVAVELRNYRADGEVFWNRVEIAPVTED-GQVTHFV 257
Query: 78 GMQVEVSKYTEG 89
G Q +V+ E
Sbjct: 258 GYQTDVTARKEA 269
>gi|23098043|ref|NP_691509.1| protein kinase [Oceanobacillus iheyensis HTE831]
gi|22776268|dbj|BAC12544.1| protein kinase [Oceanobacillus iheyensis HTE831]
Length = 264
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 53/81 (65%), Gaps = 2/81 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD ++++RDA++N + ++ NYKKDGT FWN L++ + D+ F+
Sbjct: 59 RFLQGKDTDNISIKQLRDAIQNKEPITIQIYNYKKDGTGFWNELSIDHMWDEQEGKYFFV 118
Query: 78 GMQVEVS--KYTEGVNDKALR 96
G+Q +++ K E + +K+L+
Sbjct: 119 GVQKDITNEKQNELLYEKSLK 139
>gi|407977776|ref|ZP_11158612.1| hypothetical protein BA1_01205 [Bacillus sp. HYC-10]
gi|407415638|gb|EKF37226.1| hypothetical protein BA1_01205 [Bacillus sp. HYC-10]
Length = 262
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 2/73 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTP--IKDDSGKTIK 75
RFLQG ET++ ++++R A+ N ++ +L NYKK G FWN L+V P I ++ GK +
Sbjct: 61 RFLQGDETEQIVLKQMRAAIENKEAVTVQLKNYKKSGQMFWNELSVAPLWIDENEGKRLY 120
Query: 76 FIGMQVEVSKYTE 88
F+G+Q +V+K E
Sbjct: 121 FVGLQKDVTKEKE 133
>gi|157693427|ref|YP_001487889.1| hypothetical protein BPUM_2671 [Bacillus pumilus SAFR-032]
gi|157682185|gb|ABV63329.1| hypothetical protein BPUM_2671 [Bacillus pumilus SAFR-032]
Length = 267
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD+ +++ IR ++N +L NYKKDGT FWN L + P+ + FI
Sbjct: 63 RFLQGKDTDQKQLDLIRQGIQNKTPITTQLKNYKKDGTFFWNELNIDPLYIEQDDKTFFI 122
Query: 78 GMQVEVSKYTE 88
G Q +++K E
Sbjct: 123 GFQKDITKQKE 133
>gi|188579586|ref|YP_001923031.1| signal transduction histidine kinase [Methylobacterium populi
BJ001]
gi|179343084|gb|ACB78496.1| signal transduction histidine kinase [Methylobacterium populi
BJ001]
Length = 901
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 11/95 (11%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T+ + V++IR A+R+ + + N+++DGTPF N L + P+ D G+
Sbjct: 90 RFLQGPDTEHDHVDEIRAALRDNRDLTIEITNHRRDGTPFVNALFIGPVFDGEGRLRYRF 149
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQK 112
G Q++V TE ++ + L DARQ+
Sbjct: 150 GSQIDV---TEAHRNR--------RRLAESDARQR 173
>gi|448630469|ref|ZP_21673124.1| HTR-like protein [Haloarcula vallismortis ATCC 29715]
gi|445756392|gb|EMA07767.1| HTR-like protein [Haloarcula vallismortis ATCC 29715]
Length = 726
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQG T+ V +RDA+ + L NY+KDGT FWN + + P++DD G + ++
Sbjct: 320 RMLQGENTEPEPVAAMRDAIDTEEHVTVELRNYRKDGTEFWNRVRIAPVRDDDGTVVNYV 379
Query: 78 GMQVEVS 84
G Q +++
Sbjct: 380 GFQQDIT 386
>gi|448745950|ref|ZP_21727620.1| Diguanylate phosphodiesterase, EAL domain [Halomonas titanicae BH1]
gi|445566678|gb|ELY22784.1| Diguanylate phosphodiesterase, EAL domain [Halomonas titanicae BH1]
Length = 685
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 46/71 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ETD V++++ + + + NY+ DGT FWN L ++P++D++G+ F+
Sbjct: 173 RFLQGEETDPATVKQLQVGITEQREVHVVIRNYRHDGTVFWNDLHISPVRDENGQVTHFV 232
Query: 78 GMQVEVSKYTE 88
G+Q ++S+ E
Sbjct: 233 GVQNDISEQRE 243
>gi|323448448|gb|EGB04346.1| hypothetical protein AURANDRAFT_32655 [Aureococcus anophagefferens]
Length = 140
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 41/67 (61%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP T V ++ + G +LNYKKDGTPFWN L V ++D + + + ++
Sbjct: 47 RFLQGPGTFPGTVAELAKGIAEGTDTTVTILNYKKDGTPFWNQLFVASLRDINKRVVNYV 106
Query: 78 GMQVEVS 84
G+Q+ V+
Sbjct: 107 GVQIPVA 113
>gi|77457123|ref|YP_346628.1| sensor protein [Pseudomonas fluorescens Pf0-1]
gi|77381126|gb|ABA72639.1| putative regulatory protein [Pseudomonas fluorescens Pf0-1]
Length = 158
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 2/68 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKD-DSGKTIKF 76
RFLQ + D+ + IRDA+RN S L NY+KDGTPFWN L+++ +K+ D G+T F
Sbjct: 55 RFLQSGDRDQENLALIRDALRNNGSCREILRNYRKDGTPFWNELSLSTVKNVDDGQTY-F 113
Query: 77 IGMQVEVS 84
+G+Q +V+
Sbjct: 114 VGVQKDVT 121
>gi|261856172|ref|YP_003263455.1| PAS/PAC sensor protein [Halothiobacillus neapolitanus c2]
gi|261836641|gb|ACX96408.1| putative PAS/PAC sensor protein [Halothiobacillus neapolitanus c2]
Length = 151
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 5/89 (5%)
Query: 2 SDPTGKELIGCCL-----LCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTP 56
++ + L G CL RFLQ + D++ + +I+ A++ G+S + NY+KDG
Sbjct: 33 ANAAFEHLTGYCLDEILYQDCRFLQSDDRDQSALSEIKKAIKEGRSARVVVRNYRKDGVL 92
Query: 57 FWNLLTVTPIKDDSGKTIKFIGMQVEVSK 85
FWN L++TP+ +D + FIG+Q +VS+
Sbjct: 93 FWNELSITPVFNDKDQLTYFIGVQRDVSE 121
>gi|83945017|ref|ZP_00957383.1| putative 22-domain light- and oxygen-sensing histidine kinase
[Oceanicaulis sp. HTCC2633]
gi|83851799|gb|EAP89654.1| putative 22-domain light- and oxygen-sensing histidine kinase
[Oceanicaulis sp. HTCC2633]
Length = 700
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78
FLQGPET KIR + G + +LNY K G P+W +++ P+++D+G+ ++FI
Sbjct: 422 FLQGPETSAETRAKIRQQLHAGAPFYDEILNYTKSGEPYWISMSINPVRNDAGELVRFIS 481
Query: 79 MQVEVS 84
+Q ++
Sbjct: 482 VQANIT 487
>gi|434403453|ref|YP_007146338.1| PAS domain S-box [Cylindrospermum stagnale PCC 7417]
gi|428257708|gb|AFZ23658.1| PAS domain S-box [Cylindrospermum stagnale PCC 7417]
Length = 2260
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 52/87 (59%), Gaps = 7/87 (8%)
Query: 1 MSDPTGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFW 58
M+ T E+IG C R LQG + + E+ +R AV++GK L NY+KDG+ FW
Sbjct: 1792 MTGYTAAEVIGQNC-----RLLQGADISQPELTYLRAAVQSGKDCTVILRNYRKDGSLFW 1846
Query: 59 NLLTVTPIKDDSGKTIKFIGMQVEVSK 85
N L ++P+ D G+ +IG+Q ++++
Sbjct: 1847 NELNISPVYDTDGELTHYIGIQTDITE 1873
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQG +T + ++ KIR A++ G L+NY K+G+ +W + V PIKD GK F+
Sbjct: 203 RILQGEQTSRTQLAKIRAALQAGLPIRTELINYHKNGSTYWVEINVVPIKDQQGKITHFV 262
Query: 78 GMQVEVSKYTEGVNDKALR 96
+Q +++ + ++ALR
Sbjct: 263 AVQRDITARKQ--TEEALR 279
>gi|428223286|ref|YP_007107456.1| PAS domain-containing protein [Synechococcus sp. PCC 7502]
gi|427996626|gb|AFY75321.1| PAS domain S-box [Synechococcus sp. PCC 7502]
Length = 914
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + + + IR+AV+ GKS L NY+KDGT FW L V+P+ ++ G+ FI
Sbjct: 284 RFLQGGDRSQEGLSTIREAVKQGKSCYTVLRNYRKDGTLFWVELWVSPVHNEMGELTNFI 343
Query: 78 GMQVEVS 84
G+Q +++
Sbjct: 344 GIQNDIT 350
>gi|119483270|ref|ZP_01618684.1| hypothetical protein L8106_04436 [Lyngbya sp. PCC 8106]
gi|119458037|gb|EAW39159.1| hypothetical protein L8106_04436 [Lyngbya sp. PCC 8106]
Length = 1006
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 47/68 (69%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + + ++++R A++ G+S L NY+K+G FWN LT++P+++ GK +I
Sbjct: 222 RFLQGSDRHQPALKELRKAIKAGESCSVTLRNYRKEGRLFWNELTISPVRNTWGKLTHYI 281
Query: 78 GMQVEVSK 85
G+Q ++S+
Sbjct: 282 GIQTDISE 289
>gi|336471528|gb|EGO59689.1| hypothetical protein NEUTE1DRAFT_121442 [Neurospora tetrasperma
FGSC 2508]
gi|350292631|gb|EGZ73826.1| hypothetical protein NEUTE2DRAFT_87425, partial [Neurospora
tetrasperma FGSC 2509]
Length = 717
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 10/119 (8%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RF+QG T+ + V ++R+A+ G+ + ++NY+KDGTPFWN L + P+ +D G +
Sbjct: 255 RFMQGNSTNGDAVHRMRNAIFMGREHTELIVNYRKDGTPFWNFLFICPLVED-GIVRYCL 313
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT--EVIQTVKRSQSHIR 134
G Q+ +SK + + + L +D +E +L S + I + +R HI+
Sbjct: 314 GGQINISKGMGTSHQEIM-------DLFNFDTPTEENSLPSTSTESYIGSAQRPAIHIQ 365
>gi|209526785|ref|ZP_03275306.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Arthrospira maxima CS-328]
gi|423066822|ref|ZP_17055612.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Arthrospira platensis C1]
gi|209492746|gb|EDZ93080.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Arthrospira maxima CS-328]
gi|406711587|gb|EKD06787.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Arthrospira platensis C1]
Length = 1276
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ++D + ++R A+ G+ L Y+ DG+ FWN L+++P+ ++ G FI
Sbjct: 382 RFLQGRDSDPKALAELRSAIEEGRECNIELKKYRPDGSSFWNELSISPVYNNQGFLTNFI 441
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
G+Q ++S + K N LSKS K K L IT
Sbjct: 442 GIQTDIS------DRKQAEANLLSKSEALAQFSSKLKQLHRIT 478
>gi|376003464|ref|ZP_09781274.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) and
GGDEF and EAL domains (modular protein) [Arthrospira sp.
PCC 8005]
gi|375328121|emb|CCE17027.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) and
GGDEF and EAL domains (modular protein) [Arthrospira sp.
PCC 8005]
Length = 1279
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ++D + ++R A+ G+ L Y+ DG+ FWN L+++P+ ++ G FI
Sbjct: 385 RFLQGRDSDPKALAELRSAIEEGRECNIELKKYRPDGSSFWNELSISPVYNNQGFLTNFI 444
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
G+Q ++S + K N LSKS K K L IT
Sbjct: 445 GIQTDIS------DRKQAEANLLSKSEALAQFSSKLKQLHRIT 481
>gi|194017797|ref|ZP_03056406.1| YtvA [Bacillus pumilus ATCC 7061]
gi|194010449|gb|EDW20022.1| YtvA [Bacillus pumilus ATCC 7061]
Length = 267
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD+ +++ IR ++N +L NYKKDGT FWN L + P+ + FI
Sbjct: 63 RFLQGKDTDQKQLDLIRHGIQNKTPITTQLKNYKKDGTFFWNELNIDPLYIEQDDKTFFI 122
Query: 78 GMQVEVSKYTE 88
G Q +++K E
Sbjct: 123 GFQKDITKQKE 133
>gi|428776862|ref|YP_007168649.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
[Halothece sp. PCC 7418]
gi|428691141|gb|AFZ44435.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Halothece sp. PCC 7418]
Length = 731
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 42/74 (56%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFL G + ++ KIR A++ GK C L NY+KDG+ FWN L + P+ + + I
Sbjct: 74 RFLHGHHCQQEDLSKIRQALQEGKECCAVLKNYRKDGSEFWNELYIAPVHNAQNQITHHI 133
Query: 78 GMQVEVSKYTEGVN 91
G+Q +V+ + N
Sbjct: 134 GVQTDVTHRKQAEN 147
>gi|350562548|ref|ZP_08931381.1| PAS sensor protein [Thioalkalivibrio thiocyanoxidans ARh 4]
gi|349778887|gb|EGZ33236.1| PAS sensor protein [Thioalkalivibrio thiocyanoxidans ARh 4]
Length = 150
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 45/67 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD++ V +IR A+ G L NY+KDG+ FWN L++TP+ +D + +I
Sbjct: 57 RFLQGTDTDQDGVREIRAALDAGTPCRVVLRNYRKDGSMFWNELSITPVYNDDDQLTYYI 116
Query: 78 GMQVEVS 84
G+Q +++
Sbjct: 117 GIQKDIT 123
>gi|254418026|ref|ZP_05031750.1| PAS fold family [Brevundimonas sp. BAL3]
gi|196184203|gb|EDX79179.1| PAS fold family [Brevundimonas sp. BAL3]
Length = 878
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 40/67 (59%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD V +IR AV + + N++KDG PFWN L + P+ D +G F
Sbjct: 89 RFLQGPETDPEAVSRIRAAVDAVRPIEIDIRNHRKDGAPFWNRLLMAPVFDGNGVLAYFF 148
Query: 78 GMQVEVS 84
QV+V+
Sbjct: 149 ASQVDVT 155
>gi|218533250|ref|YP_002424066.1| multi-sensor hybrid histidine kinase [Methylobacterium extorquens
CM4]
gi|218525553|gb|ACK86138.1| multi-sensor hybrid histidine kinase [Methylobacterium extorquens
CM4]
Length = 890
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 43/71 (60%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD +V +++A+ +S + NY+KDGT FWN L + P+KD G F
Sbjct: 85 RFLQGPDTDPADVTCLQEAIAAPRSIEIDIRNYRKDGTSFWNRLLMAPVKDARGALAYFF 144
Query: 78 GMQVEVSKYTE 88
Q++V+ E
Sbjct: 145 ASQLDVTTERE 155
>gi|448319142|ref|ZP_21508648.1| bacterio-opsin activator [Natronococcus jeotgali DSM 18795]
gi|445596756|gb|ELY50840.1| bacterio-opsin activator [Natronococcus jeotgali DSM 18795]
Length = 619
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQG +D V ++R + + L NY+KDGT FWN +T+ P+++D+G+ ++
Sbjct: 168 RILQGEASDPEAVAEMRTGIDEERPVTVELTNYRKDGTAFWNEVTIAPVRNDAGEVTHYV 227
Query: 78 GMQVEVSKYTEG 89
G Q +V+ E
Sbjct: 228 GFQNDVTARKEA 239
>gi|289625217|ref|ZP_06458171.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
syringae pv. aesculi str. NCPPB 3681]
gi|422586008|ref|ZP_16661064.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae
pv. aesculi str. 0893_23]
gi|330871345|gb|EGH06054.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae
pv. aesculi str. 0893_23]
Length = 425
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%)
Query: 5 TGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVT 64
TG G L R LQGP+TD+ +E++R + + G +NY+ DG+P+ ++
Sbjct: 47 TGYAAEGLIGLSPRILQGPDTDRQVIERMRQCLSESLFFEGSTVNYRADGSPYVVQWKIS 106
Query: 65 PIKDDSGKTIKFIGMQVEVS 84
P++DD+G F+ +Q +S
Sbjct: 107 PVRDDAGAVCNFVSVQQNIS 126
>gi|407364876|ref|ZP_11111408.1| sensory box protein [Pseudomonas mandelii JR-1]
Length = 150
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + ++ + IR+A+RN + NY+KDG+ FWN L++TP+ +D+ + FI
Sbjct: 54 RFLQGDDRNQAGLTVIREAIRNMLPCRQVIRNYRKDGSAFWNELSITPVFNDTDQLTYFI 113
Query: 78 GMQVEVSKYTEG 89
G+Q +VS E
Sbjct: 114 GIQKDVSVEVEA 125
>gi|381195875|ref|ZP_09903217.1| PAS/PAC/GGDEF-domain-containing protein [Acinetobacter lwoffii
WJ10621]
Length = 420
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 58/98 (59%), Gaps = 9/98 (9%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPF--- 57
M+ + +ELIG R LQGPETD +++++D + G + +NY+KD TP+
Sbjct: 54 MTGYSEEELIG---QSPRILQGPETDLTVIQELKDCISQGLFFHNHTINYRKDKTPYDVE 110
Query: 58 WNLLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKAL 95
WN ++PIK ++G+ F+ +Q ++++ E + +A+
Sbjct: 111 WN---ISPIKTETGEITHFVSVQRDITEKNESLKYQAM 145
>gi|13786959|pdb|1G28|A Chain A, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
gi|13786960|pdb|1G28|B Chain B, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
gi|13786961|pdb|1G28|C Chain C, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
gi|13786962|pdb|1G28|D Chain D, Structure Of A Flavin-Binding Domain, Lov2, From The
Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
gi|21730387|pdb|1JNU|A Chain A, Photoexcited Structure Of The Plant Photoreceptor Domain,
Phy3 Lov2
gi|21730388|pdb|1JNU|B Chain B, Photoexcited Structure Of The Plant Photoreceptor Domain,
Phy3 Lov2
gi|21730389|pdb|1JNU|C Chain C, Photoexcited Structure Of The Plant Photoreceptor Domain,
Phy3 Lov2
gi|21730390|pdb|1JNU|D Chain D, Photoexcited Structure Of The Plant Photoreceptor Domain,
Phy3 Lov2
Length = 104
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
+++ T +E++G C RFLQG TD+ V+ IRDAV+ + ++LNY K G FWNL
Sbjct: 25 LTEYTREEVLGNN--C-RFLQGRGTDRKAVQLIRDAVKEQRDVTVQVLNYTKGGRAFWNL 81
Query: 61 LTVTPIKDDSGKTIKFIGMQVEV 83
+ ++D++G FIG+Q E+
Sbjct: 82 FHLQVMRDENGDVQYFIGVQQEM 104
>gi|448611043|ref|ZP_21661677.1| bacterio-opsin activator [Haloferax mucosum ATCC BAA-1512]
gi|445743475|gb|ELZ94956.1| bacterio-opsin activator [Haloferax mucosum ATCC BAA-1512]
Length = 659
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 42/68 (61%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R+LQGP+TD +V +R A+ +S LLNY++DG FWN + V P+ G+ ++
Sbjct: 181 RYLQGPKTDPEQVTALRRAIDAEESASVELLNYREDGESFWNRVDVAPLSGPDGEVTHYV 240
Query: 78 GMQVEVSK 85
G Q ++++
Sbjct: 241 GFQTDITE 248
>gi|398978699|ref|ZP_10687978.1| PAS domain S-box [Pseudomonas sp. GM25]
gi|398136694|gb|EJM25774.1| PAS domain S-box [Pseudomonas sp. GM25]
Length = 158
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQ + D+ +E IRD +R G S L NY+KDGTPFWN L+++ +K+ F+
Sbjct: 55 RFLQAGDRDQASLEVIRDVLREGGSCREILRNYRKDGTPFWNELSLSTVKNADDGLTYFV 114
Query: 78 GMQVEVS 84
G+Q +V+
Sbjct: 115 GVQKDVT 121
>gi|16799866|ref|NP_470134.1| hypothetical protein lin0792 [Listeria innocua Clip11262]
gi|422412236|ref|ZP_16489195.1| blue-light photoreceptor [Listeria innocua FSL S4-378]
gi|20139027|sp|Q92DM1.1|PHOT_LISIN RecName: Full=Blue-light photoreceptor; AltName: Full=Phototropin
homolog
gi|16413243|emb|CAC96024.1| lin0792 [Listeria innocua Clip11262]
gi|313619927|gb|EFR91483.1| blue-light photoreceptor [Listeria innocua FSL S4-378]
Length = 253
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 52/81 (64%), Gaps = 6/81 (7%)
Query: 5 TGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLL-NYKKDGTPFWNLLTV 63
T +E IG C FLQG +TDK EV KIR A+ N KS LL NY+K+GT F N LT+
Sbjct: 47 TKEEAIGSN--C-HFLQGDDTDKEEVAKIRHAI-NEKSTANVLLKNYRKNGTSFMNELTI 102
Query: 64 TPIKDDSGKTIKFIGMQVEVS 84
PI DD+ + F+G+Q +V+
Sbjct: 103 EPIYDDNDH-LYFVGIQKDVT 122
>gi|333926788|ref|YP_004500367.1| PAS/PAC sensor-containing diguanylate cyclase [Serratia sp. AS12]
gi|333931742|ref|YP_004505320.1| PAS/PAC sensor-containing diguanylate cyclase [Serratia plymuthica
AS9]
gi|386328611|ref|YP_006024781.1| PAS/PAC sensor-containing diguanylate cyclase [Serratia sp. AS13]
gi|333473349|gb|AEF45059.1| diguanylate cyclase with PAS/PAC sensor [Serratia plymuthica AS9]
gi|333490848|gb|AEF50010.1| diguanylate cyclase with PAS/PAC sensor [Serratia sp. AS12]
gi|333960944|gb|AEG27717.1| diguanylate cyclase with PAS/PAC sensor [Serratia sp. AS13]
Length = 310
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 46/67 (68%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R+LQ + ++ E+E + +A++ G+ L NY+KDGT FWN L+++PI D++G F+
Sbjct: 53 RYLQKNDREQPELEIVHNAIKTGEYCLVTLRNYRKDGTMFWNELSISPIHDENGVVTNFL 112
Query: 78 GMQVEVS 84
G+Q +V+
Sbjct: 113 GIQKDVT 119
>gi|431804410|ref|YP_007231313.1| PAS/PAC sensor protein [Pseudomonas putida HB3267]
gi|430795175|gb|AGA75370.1| putative PAS/PAC sensor protein [Pseudomonas putida HB3267]
Length = 142
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 45/71 (63%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQ + D+ +IR A+ G+ L NY+KDG+ FWN L++TP++ D+ + FI
Sbjct: 54 RFLQADDRDQLGRARIRKALAEGRPCREVLRNYRKDGSAFWNELSITPVRHDAEQRTYFI 113
Query: 78 GMQVEVSKYTE 88
G+Q +V++ E
Sbjct: 114 GIQKDVTRQVE 124
>gi|330504500|ref|YP_004381369.1| putative PAS/PAC sensor protein [Pseudomonas mendocina NK-01]
gi|328918786|gb|AEB59617.1| putative PAS/PAC sensor protein [Pseudomonas mendocina NK-01]
Length = 148
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLL-NYKKDGTPFWNLLTVTPIKDDSGKTIKF 76
RFLQ + + ++ IRDAV+ GK C +++ NY+KDG+ FWN L++TP+ ++S + +
Sbjct: 54 RFLQAGDRAQIGLQAIRDAVKAGKP-CRQIIRNYRKDGSAFWNELSITPVLNESDQLTYY 112
Query: 77 IGMQVEVSKYTEG 89
IG+Q +V++ E
Sbjct: 113 IGIQKDVTEQVEA 125
>gi|226226244|ref|YP_002760350.1| putative signaling protein [Gemmatimonas aurantiaca T-27]
gi|226089435|dbj|BAH37880.1| putative signaling protein [Gemmatimonas aurantiaca T-27]
Length = 844
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 43/66 (65%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78
L G T + VE++R A R G+ + G +LNY++DGTPFW + TP++++ G+ +I
Sbjct: 488 LLHGTHTAADTVERMRAAARQGEPFAGEVLNYRRDGTPFWMEVHTTPLRNEHGEVTSWIS 547
Query: 79 MQVEVS 84
++ +++
Sbjct: 548 VERDIT 553
>gi|423099904|ref|ZP_17087611.1| putative blue-light photoreceptor [Listeria innocua ATCC 33091]
gi|370793637|gb|EHN61470.1| putative blue-light photoreceptor [Listeria innocua ATCC 33091]
Length = 266
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 52/81 (64%), Gaps = 6/81 (7%)
Query: 5 TGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLL-NYKKDGTPFWNLLTV 63
T +E IG C FLQG +TDK EV KIR A+ N KS LL NY+K+GT F N LT+
Sbjct: 60 TKEEAIGSN--C-HFLQGDDTDKEEVAKIRHAI-NEKSTANVLLKNYRKNGTSFMNELTI 115
Query: 64 TPIKDDSGKTIKFIGMQVEVS 84
PI DD+ + F+G+Q +V+
Sbjct: 116 EPIYDDNDH-LYFVGIQKDVT 135
>gi|389572311|ref|ZP_10162396.1| ytvA [Bacillus sp. M 2-6]
gi|388427892|gb|EIL85692.1| ytvA [Bacillus sp. M 2-6]
Length = 262
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTP--IKDDSGKTIK 75
RFLQG ET++ +++IR A+ ++ +L NYKK G FWN L+V P I ++ GK +
Sbjct: 61 RFLQGDETEQIALKQIRAAIEKKEAVTVQLKNYKKSGQMFWNELSVAPLWIDENEGKRLY 120
Query: 76 FIGMQVEVSKYTE 88
F+G+Q +V+K E
Sbjct: 121 FVGLQKDVTKEKE 133
>gi|422638482|ref|ZP_16701913.1| PAS:GGDEF protein, partial [Pseudomonas syringae Cit 7]
gi|330950877|gb|EGH51137.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7]
Length = 417
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ T + LIG R LQGP+TD +E++R+ + + G +NY+ DG+P+
Sbjct: 45 MTGYTAEALIGAS---PRILQGPDTDPQVIERMRECLSESLFFEGSTVNYRADGSPYIVE 101
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVS 84
++P++DD+G F+ +Q +S
Sbjct: 102 WKISPVRDDAGSVCNFVSVQQNIS 125
>gi|163744962|ref|ZP_02152322.1| sensory box histidine kinase [Oceanibulbus indolifex HEL-45]
gi|161381780|gb|EDQ06189.1| sensory box histidine kinase [Oceanibulbus indolifex HEL-45]
Length = 354
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
+D TG L RFLQGPET + V+ +R+ + + + ++NY+KDG+ F N
Sbjct: 66 FTDLTGYTLDEIVGQNCRFLQGPETTRESVDTVREILVDRRVDTVEIVNYRKDGSRFLNA 125
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVS 84
L + PI D++G F G Q++VS
Sbjct: 126 LQLGPINDEAGNLAYFFGSQLDVS 149
>gi|334143279|ref|YP_004536435.1| PAS sensor protein [Thioalkalimicrobium cyclicum ALM1]
gi|333964190|gb|AEG30956.1| PAS sensor protein [Thioalkalimicrobium cyclicum ALM1]
Length = 148
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 44/68 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + +++ V+ IR AV + K L NY+KDG+ FWN L+VTP D K +I
Sbjct: 58 RFLQGSDREQDAVKVIRSAVDSNKPVRTILKNYRKDGSSFWNELSVTPYYDQYDKLTYYI 117
Query: 78 GMQVEVSK 85
G+Q +V++
Sbjct: 118 GIQKDVTE 125
>gi|440744381|ref|ZP_20923684.1| PAS:GGDEF protein [Pseudomonas syringae BRIP39023]
gi|440373799|gb|ELQ10542.1| PAS:GGDEF protein [Pseudomonas syringae BRIP39023]
Length = 418
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ T + LIG R LQGP+TD +E++R+ + + G +NY+ DG+P+
Sbjct: 46 MTGYTAEALIGAS---PRILQGPDTDPQVIERMRECLSESLFFEGSTVNYRADGSPYIVE 102
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVS 84
++P++DD+G F+ +Q +S
Sbjct: 103 WKISPVRDDAGSVCNFVSVQQNIS 126
>gi|384176619|ref|YP_005558004.1| sensory box protein [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|349595843|gb|AEP92030.1| sensory box protein [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
Length = 261
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD EV+ IR A++N + ++ NYKKDGT FWN L + P++ + KT F+
Sbjct: 63 RFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPMEIED-KTY-FV 120
Query: 78 GMQVEVSKYTE 88
G+Q +++K E
Sbjct: 121 GIQKDITKQKE 131
>gi|16080086|ref|NP_390912.1| blue light GTP-binding receptor [Bacillus subtilis subsp. subtilis
str. 168]
gi|221310973|ref|ZP_03592820.1| hypothetical protein Bsubs1_16521 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221315300|ref|ZP_03597105.1| hypothetical protein BsubsN3_16427 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221320217|ref|ZP_03601511.1| hypothetical protein BsubsJ_16348 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221324499|ref|ZP_03605793.1| hypothetical protein BsubsS_16497 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|402777188|ref|YP_006631132.1| blue light GTP-binding receptor [Bacillus subtilis QB928]
gi|452915728|ref|ZP_21964354.1| blue-light photoreceptor [Bacillus subtilis MB73/2]
gi|20138874|sp|O34627.1|PHOT_BACSU RecName: Full=Blue-light photoreceptor; AltName: Full=Photoactive
flavo-yellow protein; AltName: Full=Phototropin homolog
gi|2293304|gb|AAC00382.1| putative protein kinase [Bacillus subtilis]
gi|2635518|emb|CAB15012.1| blue light GTP-binding receptor [Bacillus subtilis subsp. subtilis
str. 168]
gi|402482367|gb|AFQ58876.1| Blue light GTP-binding receptor [Bacillus subtilis QB928]
gi|407961044|dbj|BAM54284.1| blue light GTP-binding receptor [Synechocystis sp. PCC 6803]
gi|407965874|dbj|BAM59113.1| blue light GTP-binding receptor [Bacillus subtilis BEST7003]
gi|452116076|gb|EME06472.1| blue-light photoreceptor [Bacillus subtilis MB73/2]
Length = 261
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD EV+ IR A++N + ++ NYKKDGT FWN L + P++ + KT F+
Sbjct: 63 RFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPMEIED-KTY-FV 120
Query: 78 GMQVEVSKYTE 88
G+Q +++K E
Sbjct: 121 GIQNDITKQKE 131
>gi|418031775|ref|ZP_12670258.1| blue light GTP-binding receptor [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|351470638|gb|EHA30759.1| blue light GTP-binding receptor [Bacillus subtilis subsp. subtilis
str. SC-8]
Length = 261
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD EV+ IR A++N + ++ NYKKDGT FWN L + P++ + KT F+
Sbjct: 63 RFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPMEIED-KTY-FV 120
Query: 78 GMQVEVSKYTE 88
G+Q +++K E
Sbjct: 121 GIQKDITKQKE 131
>gi|83643375|ref|YP_431810.1| PAS/PAC domain-containing protein [Hahella chejuensis KCTC 2396]
gi|83631418|gb|ABC27385.1| FOG: PAS/PAC domain [Hahella chejuensis KCTC 2396]
Length = 300
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 8 ELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIK 67
ELIG R LQGP TD + +IR A++ RLLNY+KDG +W +++ P+
Sbjct: 53 ELIGAT---PRMLQGPLTDASACRRIRRALQEKSQVRCRLLNYRKDGGQYWIEISIMPLL 109
Query: 68 DDSGKTIKFIGMQVEVSKYT 87
D SG F +Q ++S Y
Sbjct: 110 DKSGAVSHFAAIQRDISAYV 129
>gi|341615104|ref|ZP_08701973.1| sensor histidine kinase [Citromicrobium sp. JLT1363]
Length = 222
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 39/66 (59%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFL G T+ EKIR VR K +LNYKK G PF N + V PI D++ + + F+
Sbjct: 76 RFLAGEGTEPWLTEKIRSGVREKKPVLVEILNYKKSGAPFRNAVLVAPIYDEANELLYFL 135
Query: 78 GMQVEV 83
G QVE+
Sbjct: 136 GSQVEI 141
>gi|428280513|ref|YP_005562248.1| hypothetical protein BSNT_04421 [Bacillus subtilis subsp. natto
BEST195]
gi|291485470|dbj|BAI86545.1| hypothetical protein BSNT_04421 [Bacillus subtilis subsp. natto
BEST195]
Length = 261
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD EV+ IR A++N + ++ NYKKDGT FWN L + P++ + KT F+
Sbjct: 63 RFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPMEIED-KTY-FV 120
Query: 78 GMQVEVSKYTE 88
G+Q +++K E
Sbjct: 121 GIQKDITKQKE 131
>gi|402699567|ref|ZP_10847546.1| putative PAS/PAC sensor protein [Pseudomonas fragi A22]
Length = 157
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 45/67 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQ + D+ ++ IRDA+ +G+ L NY+KDG FWN L++TP+ +++ + FI
Sbjct: 54 RFLQAGDRDQTGLQLIRDAIASGQPTRQILRNYRKDGAHFWNELSITPVFNENDQLTYFI 113
Query: 78 GMQVEVS 84
G+Q +V+
Sbjct: 114 GVQKDVT 120
>gi|390440120|ref|ZP_10228472.1| Multi-sensor signal transduction histidine kinase [Microcystis sp.
T1-4]
gi|389836486|emb|CCI32596.1| Multi-sensor signal transduction histidine kinase [Microcystis sp.
T1-4]
Length = 897
Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R QGP+TD V+++RDA + G +NY+KDG+ FW ++ P+ D GK +I
Sbjct: 451 RIFQGPKTDPEAVKRVRDAFLRLQPVTGEAINYRKDGSEFWVEFSIVPVADKRGKYTHWI 510
Query: 78 GMQVEVSKYTEGVNDKALR 96
+Q ++S+ + ++ALR
Sbjct: 511 SIQRDISERKQ--TEEALR 527
>gi|419953698|ref|ZP_14469841.1| sensory box protein [Pseudomonas stutzeri TS44]
gi|387969387|gb|EIK53669.1| sensory box protein [Pseudomonas stutzeri TS44]
Length = 148
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 44/67 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQ + D+ + IR+A++ + L NY+KDGTPFWN L++TP+ ++ + FI
Sbjct: 54 RFLQAGDRDQPALSAIREAMQQRRPCRQVLRNYRKDGTPFWNELSITPVFNEGDQLTYFI 113
Query: 78 GMQVEVS 84
G+Q +V+
Sbjct: 114 GIQKDVT 120
>gi|321312570|ref|YP_004204857.1| blue light GTP-binding receptor [Bacillus subtilis BSn5]
gi|320018844|gb|ADV93830.1| blue light GTP-binding receptor [Bacillus subtilis BSn5]
Length = 261
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD EV+ IR A++N + ++ NYKKDGT FWN L + P++ + KT F+
Sbjct: 63 RFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPMEIED-KTY-FV 120
Query: 78 GMQVEVSKYTE 88
G+Q +++K E
Sbjct: 121 GIQKDITKQKE 131
>gi|292490507|ref|YP_003525946.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
gi|291579102|gb|ADE13559.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
Length = 149
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 45/68 (66%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + D+ EV+++R+A++N + NYKK+G F+N L V P+ D G + F+
Sbjct: 63 RFLQGNDRDQEEVKRLREAIQNRVPIEVDIRNYKKNGELFYNHLAVNPVFDQDGNLLYFL 122
Query: 78 GMQVEVSK 85
G+Q +V+K
Sbjct: 123 GIQYDVTK 130
>gi|149922527|ref|ZP_01910958.1| sensory box histidine kinase/response regulator [Plesiocystis
pacifica SIR-1]
gi|149816635|gb|EDM76129.1| sensory box histidine kinase/response regulator [Plesiocystis
pacifica SIR-1]
Length = 739
Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 5 TGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVT 64
T +EL+G L + LQGP+TD E +IR+ VR G + LLNY K G P+W +
Sbjct: 145 TLEELVGTRL--GQLLQGPDTDPLEAARIRECVRRGAGFETELLNYDKAGEPYWVRIEAE 202
Query: 65 PIKDDSGKTIKFIGMQVEVSKYTE 88
P D G+ F+G+QV+++ E
Sbjct: 203 PFVDRDGERY-FLGIQVDITAERE 225
>gi|383460060|gb|AFH34990.1| YF1 [Expression vector pDusk]
gi|383460065|gb|AFH34994.1| YF1 [Expression vector pDawn]
Length = 380
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD EV+ IR A++N + ++ NYKKDGT FWN L + P++ + KT F+
Sbjct: 63 RFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPMEIED-KTY-FV 120
Query: 78 GMQVEVSKYTE 88
G+Q +++++ +
Sbjct: 121 GIQNDITEHQQ 131
>gi|429191076|ref|YP_007176754.1| PAS domain-containing protein [Natronobacterium gregoryi SP2]
gi|448327353|ref|ZP_21516683.1| bacterio-opsin activator [Natronobacterium gregoryi SP2]
gi|429135294|gb|AFZ72305.1| PAS domain S-box [Natronobacterium gregoryi SP2]
gi|445608586|gb|ELY62420.1| bacterio-opsin activator [Natronobacterium gregoryi SP2]
Length = 616
Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQGP++D+ + ++ AV + NY+KDGT FWN +T+ P+++D G+ ++
Sbjct: 164 RLLQGPDSDEETIAEMAAAVDEDYPVTVEIKNYRKDGTEFWNEVTIAPVRNDEGEVTNYV 223
Query: 78 GMQVEVSKYTEG 89
G Q +++ E
Sbjct: 224 GFQNDITARKEA 235
>gi|398305804|ref|ZP_10509390.1| sensory box protein [Bacillus vallismortis DV1-F-3]
Length = 261
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD EV+ I+ A++N + ++ NYKKDGT FWN L + P++ + GKT F+
Sbjct: 63 RFLQGKHTDPAEVKNIKTALQNKEPVTVQIQNYKKDGTMFWNELNIDPLEIE-GKTY-FV 120
Query: 78 GMQVEVSKYTE 88
G+Q ++++ E
Sbjct: 121 GIQKDITRQKE 131
>gi|398969495|ref|ZP_10682906.1| PAS domain S-box [Pseudomonas sp. GM30]
gi|398141908|gb|EJM30814.1| PAS domain S-box [Pseudomonas sp. GM30]
Length = 158
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 47/68 (69%), Gaps = 2/68 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKD-DSGKTIKF 76
RFLQ + D+ +E+IR +R G S L NY+KDGTPFWN L+++ +K+ D G+T F
Sbjct: 55 RFLQAGDRDQASLERIRGVLREGGSCREILRNYRKDGTPFWNELSLSTVKNADDGQTY-F 113
Query: 77 IGMQVEVS 84
+G+Q +V+
Sbjct: 114 VGVQKDVT 121
>gi|124515794|gb|EAY57303.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Leptospirillum rubarum]
Length = 1036
Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 42/67 (62%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + ++ +IR A+ GKS L NY+KDGTPF N L++ PI D G ++
Sbjct: 398 RFLQGADREQESRTEIRQAIEAGKSVRTMLRNYRKDGTPFINELSLFPITDPDGTVTHYL 457
Query: 78 GMQVEVS 84
G+Q +V+
Sbjct: 458 GIQNDVT 464
>gi|289646730|ref|ZP_06478073.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
syringae pv. aesculi str. 2250]
Length = 474
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%)
Query: 5 TGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVT 64
TG G L R LQGP+TD+ +E++R + + G +NY+ DG+P+ ++
Sbjct: 47 TGYAAEGLIGLSPRILQGPDTDRQVIERMRQCLSESLFFEGSTVNYRADGSPYVVQWKIS 106
Query: 65 PIKDDSGKTIKFIGMQVEVS 84
P++DD+G F+ +Q +S
Sbjct: 107 PVRDDAGAVCNFVSVQQNIS 126
>gi|424866223|ref|ZP_18290064.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Leptospirillum sp. Group II 'C75']
gi|387223020|gb|EIJ77392.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Leptospirillum sp. Group II 'C75']
Length = 1036
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 42/67 (62%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + ++ +IR A+ GKS L NY+KDGTPF N L++ PI D G ++
Sbjct: 398 RFLQGADREQESRTEIRQAIEAGKSVRTMLRNYRKDGTPFINELSLFPITDPDGTVTHYL 457
Query: 78 GMQVEVS 84
G+Q +V+
Sbjct: 458 GIQNDVT 464
>gi|410478507|ref|YP_006766144.1| signal transduction protein [Leptospirillum ferriphilum ML-04]
gi|406773759|gb|AFS53184.1| putative signal transduction protein [Leptospirillum ferriphilum
ML-04]
Length = 1036
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 42/67 (62%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + ++ +IR A+ GKS L NY+KDGTPF N L++ PI D G ++
Sbjct: 398 RFLQGADREQESRTEIRQAIEAGKSVRTMLRNYRKDGTPFINELSLFPITDPDGTVTHYL 457
Query: 78 GMQVEVS 84
G+Q +V+
Sbjct: 458 GIQNDVT 464
>gi|448425807|ref|ZP_21582979.1| histidine kinase [Halorubrum terrestre JCM 10247]
gi|445680222|gb|ELZ32672.1| histidine kinase [Halorubrum terrestre JCM 10247]
Length = 501
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 66/121 (54%), Gaps = 5/121 (4%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T + ++IR + +S +LNY+ +G FWN L + P+++++ +T F+
Sbjct: 215 RFLQGPDTAEETTDEIRAGLDEERSVDVDILNYRANGQKFWNRLQIEPLRNEADETTHFV 274
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRSQSHIRALS 137
G Q ++++ + ++ L + ++ ++ R K + ++++ +S RAL
Sbjct: 275 GFQTDITE--RKIRERRLE---VMARVLNHNLRNKMNLISGYADLLRDAPDEESQRRALD 329
Query: 138 L 138
+
Sbjct: 330 V 330
>gi|430757134|ref|YP_007208463.1| Photoactive flavo- yellow protein [Bacillus subtilis subsp.
subtilis str. BSP1]
gi|430021654|gb|AGA22260.1| Photoactive flavo- yellow protein [Bacillus subtilis subsp.
subtilis str. BSP1]
Length = 261
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD EV+ IR A++N + ++ NYKKDGT FWN L + P++ + KT F+
Sbjct: 63 RFLQGKHTDPAEVDNIRTALQNKEPVTIQIQNYKKDGTMFWNELNIDPMEIED-KTY-FV 120
Query: 78 GMQVEVSKYTE 88
G+Q +++K E
Sbjct: 121 GIQNDITKQKE 131
>gi|71736520|ref|YP_273494.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae
pv. phaseolicola 1448A]
gi|71557073|gb|AAZ36284.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
syringae pv. phaseolicola 1448A]
Length = 459
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ + LIG L R LQGP+TD+ +E++R + + G +NY+ DG+P+
Sbjct: 80 MTGYAAEALIG---LSPRILQGPDTDRQVIERMRQCLSESLFFEGSTVNYRADGSPYVVE 136
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVS 84
++P++DD+G F+ +Q +S
Sbjct: 137 WKISPVRDDAGAVCNFVSVQQNIS 160
>gi|428225933|ref|YP_007110030.1| PAS/PAC and GAF sensor-containing diguanylate
cyclase/phosphodiesterase [Geitlerinema sp. PCC 7407]
gi|427985834|gb|AFY66978.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Geitlerinema sp. PCC 7407]
Length = 1135
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+ D+ VE++R A+R + L N +KDG FWN L V P+ D G F+
Sbjct: 475 RFLQGPDRDQAGVEELRRAIREQRECHVVLHNTRKDGVDFWNELFVAPVFDRQGYLTHFV 534
Query: 78 GMQVEVSKYTEGVNDKALR 96
G+Q ++++ ++ALR
Sbjct: 535 GIQNDITERKRA--EEALR 551
>gi|424071006|ref|ZP_17808434.1| sensor y box/GGDEF domain-containing protein domain-containing
protein [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|407999748|gb|EKG40126.1| sensor y box/GGDEF domain-containing protein domain-containing
protein [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
Length = 418
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ T + LIG R LQGP+TD +E++R+ + + G +NY+ DG+P+
Sbjct: 46 MTGYTAEALIGAS---PRILQGPDTDPQVIERMRECLSESLFFEGSTVNYRADGSPYIVE 102
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVS 84
++P++DD+G F+ +Q +S
Sbjct: 103 WKISPVRDDAGTVCNFVSVQQNIS 126
>gi|299008122|gb|ADJ00051.1| Evoglow [Promoter probe vector pEvoGlowRed]
gi|299008129|gb|ADJ00057.1| Evoglow [Mariner mini-transposon delivery vector pMaGlowRedKm]
gi|299008135|gb|ADJ00062.1| Evoglow [Mariner mini-transposon delivery vector pMaTcGlow]
gi|299008142|gb|ADJ00067.1| Evoglow [Mariner mini-transposon delivery vector pMaGlow]
gi|299008157|gb|ADJ00079.1| Evoglow [Reporter vector pGlowRed]
Length = 143
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 5 TGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVT 64
TG E +RFLQG TD EV+ IR A++N + ++ NYKKDGT FWN L +
Sbjct: 50 TGYETEEILGKNARFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKKDGTMFWNELNID 109
Query: 65 PIKDDSGKTIKFIGMQVEVSKYTE 88
P++ + KT F+G+Q +++K E
Sbjct: 110 PMEIED-KTY-FVGIQNDITKQKE 131
>gi|237757476|gb|ACR16779.1| FMN-based fluorescent protein CaFbFP [synthetic construct]
Length = 278
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 5 TGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVT 64
TG E +RFLQG TD EV+ IR A++N + ++ NYKKDGT FWN L +
Sbjct: 50 TGYETEEILGKNARFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKKDGTMFWNELNID 109
Query: 65 PIKDDSGKTIKFIGMQVEVSKYTE 88
P++ + KT F+G+Q +++K E
Sbjct: 110 PMEIED-KTY-FVGIQNDITKQKE 131
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 5 TGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVT 64
TG E +RFLQG TD EV+ IR A++N + ++ NYKKDGT FWN L +
Sbjct: 189 TGYETEEILGKNARFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKKDGTMFWNELNID 248
Query: 65 PIKDDSGKTIKFIGMQVEVSKYTE 88
P++ + KT F+G+Q +++K E
Sbjct: 249 PMEIED-KTY-FVGIQNDITKQKE 270
>gi|126023750|gb|ABN71355.1| FMN-based fluorescence protein [synthetic construct]
gi|238480383|gb|ACR43777.1| FMN-based fluorescent protein CaFbFP [synthetic construct]
Length = 137
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 5 TGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVT 64
TG E +RFLQG TD EV+ IR A++N + ++ NYKKDGT FWN L +
Sbjct: 50 TGYETEEILGKNARFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKKDGTMFWNELNID 109
Query: 65 PIKDDSGKTIKFIGMQVEVSKYTE 88
P++ + KT F+G+Q +++K E
Sbjct: 110 PMEIED-KTY-FVGIQNDITKQKE 131
>gi|422656627|ref|ZP_16719072.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv.
lachrymans str. M302278]
gi|331015155|gb|EGH95211.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv.
lachrymans str. M302278]
Length = 425
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ T +ELIG L R LQG +TD +E++R + + G +NY+ DG+P+
Sbjct: 46 MTGYTAEELIG---LSPRILQGADTDPQVIERLRQCLSERLFFEGSTVNYRADGSPYVVE 102
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSL 104
++P++DD+G+ F+ +Q +S ++ L L+ +
Sbjct: 103 WKISPVRDDAGQVCNFVSVQQNISPRIRAEREQHLLAQALNAAF 146
>gi|302186039|ref|ZP_07262712.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642]
Length = 418
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ T + LIG R LQGP+TD +E++R+ + + G +NY+ DG+P+
Sbjct: 46 MTGYTAEALIGAS---PRILQGPDTDPQVIERMRECLSESLFFEGSTVNYRADGSPYIVE 102
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVS 84
++P++DD+G F+ +Q +S
Sbjct: 103 WKISPVRDDAGTVCNFVSVQQNIS 126
>gi|383323933|ref|YP_005384787.1| chromatic acclimation sensor CcaS/ScaS/Hik32 [Synechocystis sp. PCC
6803 substr. GT-I]
gi|383327102|ref|YP_005387956.1| chromatic acclimation sensor CcaS/ScaS/Hik32 [Synechocystis sp. PCC
6803 substr. PCC-P]
gi|383492986|ref|YP_005410663.1| chromatic acclimation sensor CcaS/ScaS/Hik32 [Synechocystis sp. PCC
6803 substr. PCC-N]
gi|384438254|ref|YP_005652979.1| chromatic acclimation sensor CcaS/ScaS/Hik32 [Synechocystis sp. PCC
6803]
gi|114848882|gb|ABI83649.1| chromatic acclimation sensor [Synechocystis sp. PCC 6803]
gi|339275287|dbj|BAK51774.1| chromatic acclimation sensor CcaS/ScaS/Hik32 [Synechocystis sp. PCC
6803]
gi|359273253|dbj|BAL30772.1| chromatic acclimation sensor CcaS/ScaS/Hik32 [Synechocystis sp. PCC
6803 substr. GT-I]
gi|359276423|dbj|BAL33941.1| chromatic acclimation sensor CcaS/ScaS/Hik32 [Synechocystis sp. PCC
6803 substr. PCC-N]
gi|359279593|dbj|BAL37110.1| chromatic acclimation sensor CcaS/ScaS/Hik32 [Synechocystis sp. PCC
6803 substr. PCC-P]
Length = 753
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 59/105 (56%), Gaps = 5/105 (4%)
Query: 5 TGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVT 64
T +E++G R LQGP+T + E++++R A+ +S ++NY+KDG+ FW ++
Sbjct: 427 TAEEMLGKT---PRVLQGPKTSRTELDRVRQAISQWQSVTVEVINYRKDGSEFWVEFSLV 483
Query: 65 PIKDDSGKTIKFIGMQVEVS--KYTEGVNDKALRPNGLSKSLIRY 107
P+ + +G +I +Q +V+ + TE V R LS+ R+
Sbjct: 484 PVANKTGFYTHWIAVQRDVTERRRTEEVRLALEREKELSRLKTRF 528
>gi|66044408|ref|YP_234249.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
gi|422671424|ref|ZP_16730790.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273]
gi|63255115|gb|AAY36211.1| diguanylate cyclase with PAS/PAC sensor [Pseudomonas syringae pv.
syringae B728a]
gi|330969164|gb|EGH69230.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273]
Length = 418
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ T + LIG R LQGP+TD +E++R+ + + G +NY+ DG+P+
Sbjct: 46 MTGYTAEALIGAS---PRILQGPDTDPQVIERMRECLSESLFFEGSTVNYRADGSPYIVE 102
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVS 84
++P++DD+G F+ +Q +S
Sbjct: 103 WKISPVRDDAGTVCNFVSVQQNIS 126
>gi|448452865|ref|ZP_21593538.1| histidine kinase [Halorubrum litoreum JCM 13561]
gi|445808416|gb|EMA58486.1| histidine kinase [Halorubrum litoreum JCM 13561]
Length = 502
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 66/121 (54%), Gaps = 5/121 (4%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T + ++IR + +S +LNY+ +G FWN L + P+++++ +T F+
Sbjct: 216 RFLQGPDTAEETTDEIRAGLDEERSVDVDILNYRANGQKFWNRLQIEPLRNEADETTHFV 275
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRSQSHIRALS 137
G Q ++++ + ++ L + ++ ++ R K + ++++ +S RAL
Sbjct: 276 GFQTDITE--RKIRERRLE---VMARVLNHNLRNKMNLISGYADLLRDAPDEESQRRALD 330
Query: 138 L 138
+
Sbjct: 331 V 331
>gi|422629842|ref|ZP_16695044.1| PAS:GGDEF protein [Pseudomonas syringae pv. pisi str. 1704B]
gi|330939045|gb|EGH42501.1| PAS:GGDEF protein [Pseudomonas syringae pv. pisi str. 1704B]
Length = 418
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ T + LIG R LQGP+TD +E++R+ + + G +NY+ DG+P+
Sbjct: 46 MTGYTAEALIGAS---PRILQGPDTDPQVIERMRECLSESLFFEGSTVNYRADGSPYIVE 102
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVS 84
++P++DD+G F+ +Q +S
Sbjct: 103 WKISPVRDDAGTVCNFVSVQQNIS 126
>gi|299008150|gb|ADJ00073.1| Evoglow [Mariner mini-transposon delivery vector pMaEvo]
Length = 165
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 2/72 (2%)
Query: 17 SRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKF 76
+RFLQG TD EV+ IR A++N + ++ NYKKDGT FWN L + P++ + KT F
Sbjct: 62 ARFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPMEIED-KTY-F 119
Query: 77 IGMQVEVSKYTE 88
+G+Q +++K E
Sbjct: 120 VGIQNDITKQKE 131
>gi|187477502|ref|YP_785526.1| signaling protein [Bordetella avium 197N]
gi|115422088|emb|CAJ48612.1| putative signaling protein [Bordetella avium 197N]
Length = 429
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 9/106 (8%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPF--- 57
M+ T +ELIG + LQGP TDK + ++R ++NG + G NY+KDG+P+
Sbjct: 50 MTGYTAEELIGNS---PKILQGPLTDKTVINRLRLCLKNGDYFQGSTFNYRKDGSPYLVE 106
Query: 58 WNLLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKS 103
WN ++P++ G F+ +Q +++ T +AL L+ +
Sbjct: 107 WN---ISPVRGAQGGIEHFVSVQRDITARTLAQQRQALLAQALNAT 149
>gi|443645189|ref|ZP_21129039.1| Sensory box/diguanylate cyclase (GGDEF) domain protein [Pseudomonas
syringae pv. syringae B64]
gi|443285206|gb|ELS44211.1| Sensory box/diguanylate cyclase (GGDEF) domain protein [Pseudomonas
syringae pv. syringae B64]
Length = 418
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ T + LIG R LQGP+TD +E++R+ + + G +NY+ DG+P+
Sbjct: 46 MTGYTAEALIGAS---PRILQGPDTDPQVIERMRECLSESLFFEGSTVNYRADGSPYIVE 102
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVS 84
++P++DD+G F+ +Q +S
Sbjct: 103 WKISPVRDDAGTVCNFVSVQQNIS 126
>gi|348030025|ref|YP_004872711.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
[Glaciecola nitratireducens FR1064]
gi|347947369|gb|AEP30719.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
[Glaciecola nitratireducens FR1064]
Length = 592
Score = 62.0 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 48/89 (53%)
Query: 20 LQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGM 79
LQG ETD V++IRD + + + +LNY DG P+W L++ PI D GK K+I +
Sbjct: 313 LQGKETDARTVQRIRDYIAREEPFYDEILNYSVDGKPYWISLSINPIFDKHGKLEKYISV 372
Query: 80 QVEVSKYTEGVNDKALRPNGLSKSLIRYD 108
Q +++ + D + L +L+ D
Sbjct: 373 QANITQVKQMALDFTRKIEALGDALLFMD 401
>gi|422616285|ref|ZP_16684991.1| PAS:GGDEF protein [Pseudomonas syringae pv. japonica str. M301072]
gi|330895801|gb|EGH28090.1| PAS:GGDEF protein [Pseudomonas syringae pv. japonica str. M301072]
Length = 418
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ T + LIG R LQGP+TD +E++R+ + + G +NY+ DG+P+
Sbjct: 46 MTGYTAEALIGAS---PRILQGPDTDPQVIERMRECLSESLFFEGSTVNYRADGSPYIVE 102
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVS 84
++P++DD+G F+ +Q +S
Sbjct: 103 WKISPVRDDAGTVCNFVSVQQNIS 126
>gi|289678107|ref|ZP_06498997.1| PAS:GGDEF [Pseudomonas syringae pv. syringae FF5]
Length = 418
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ T + LIG R LQGP+TD +E++R+ + + G +NY+ DG+P+
Sbjct: 46 MTGYTAEALIGAS---PRILQGPDTDPQVIERMRECLSESLFFEGSTVNYRADGSPYIVE 102
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVS 84
++P++DD+G F+ +Q +S
Sbjct: 103 WKISPVRDDAGTVCNFVSVQQNIS 126
>gi|448485062|ref|ZP_21606428.1| histidine kinase [Halorubrum arcis JCM 13916]
gi|445818755|gb|EMA68605.1| histidine kinase [Halorubrum arcis JCM 13916]
Length = 501
Score = 62.0 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 66/121 (54%), Gaps = 5/121 (4%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T + ++IR + +S +LNY+ +G FWN L + P+++++ +T F+
Sbjct: 215 RFLQGPDTAEETTDEIRAGLDEERSVDVDILNYRANGQKFWNRLQIEPLRNEADETTHFV 274
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRSQSHIRALS 137
G Q ++++ + ++ L + ++ ++ R K + ++++ +S RAL
Sbjct: 275 GFQTDITE--RKIRERRLE---VMARVLNHNLRNKMNLISGYADLLRDAPDEESQRRALD 329
Query: 138 L 138
+
Sbjct: 330 V 330
>gi|115373032|ref|ZP_01460335.1| PAS [Stigmatella aurantiaca DW4/3-1]
gi|115369944|gb|EAU68876.1| PAS [Stigmatella aurantiaca DW4/3-1]
Length = 836
Score = 62.0 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 41/66 (62%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78
L GP TD + I A++ G+ +LNY+KDG PFWN + P++D+ G+ ++F+
Sbjct: 216 LLYGPGTDPAVISAIHQAIQRGEGATFEMLNYRKDGEPFWNHSDIQPVRDEHGRLVQFVS 275
Query: 79 MQVEVS 84
++ +V+
Sbjct: 276 IESDVT 281
>gi|254413183|ref|ZP_05026954.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196179803|gb|EDX74796.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1145
Score = 62.0 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 45/67 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ++++ ++E++R A+ K L NY+KDG+ FWN L ++P+++ G F+
Sbjct: 390 RFLQGDDSNQAQLEEVRQAIATKKDCQITLRNYRKDGSVFWNDLYISPVRNSQGTLTHFL 449
Query: 78 GMQVEVS 84
G+Q +V+
Sbjct: 450 GVQTDVT 456
>gi|443329544|ref|ZP_21058129.1| PAS domain S-box [Xenococcus sp. PCC 7305]
gi|442790882|gb|ELS00384.1| PAS domain S-box [Xenococcus sp. PCC 7305]
Length = 847
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 45/68 (66%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQG +T ++E++KIR A+ N +S L+NY+KDG+ FW + + P+ D+ G +I
Sbjct: 58 RILQGKKTQRSELDKIRHALENWESVRVELINYRKDGSEFWVEINLNPVADEQGCYTHWI 117
Query: 78 GMQVEVSK 85
+Q EV++
Sbjct: 118 AIQREVTE 125
>gi|433774732|ref|YP_007305199.1| PAS domain S-box [Mesorhizobium australicum WSM2073]
gi|433666747|gb|AGB45823.1| PAS domain S-box [Mesorhizobium australicum WSM2073]
Length = 382
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 56/97 (57%), Gaps = 7/97 (7%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPE+DK + +IR A+ + +LNY+KDG+ FWN L ++P+ +D G+ F
Sbjct: 76 RFLQGPESDKEAIAQIRAAIADETDISVDILNYRKDGSTFWNALYISPVSNDKGEMQFFF 135
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEK 114
Q++VS D+ L N ++ R++ KE+
Sbjct: 136 ASQLDVS-------DRKLWENRITADKERFEKAVKER 165
>gi|251771609|gb|EES52185.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
[Leptospirillum ferrodiazotrophum]
Length = 1887
Score = 62.0 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 42/70 (60%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78
FL GPETD V++I + R G+ + Y+KDG+ FW+L ++ PI D SG+ +F+G
Sbjct: 980 FLVGPETDTKTVDRILENFRTGEPFQEMARFYRKDGSAFWDLFSINPIYDGSGQIREFVG 1039
Query: 79 MQVEVSKYTE 88
+ V+ E
Sbjct: 1040 IHRNVTDMVE 1049
>gi|433638189|ref|YP_007283949.1| PAS domain S-box [Halovivax ruber XH-70]
gi|433289993|gb|AGB15816.1| PAS domain S-box [Halovivax ruber XH-70]
Length = 674
Score = 62.0 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPETD + V K+R A+ + L NY+ DG FWN + + P+ + G+ F+
Sbjct: 199 RFLQGPETDPDAVAKLRAAIDAAEPVAVELQNYRADGEVFWNRVEIAPVT-EHGQVTHFV 257
Query: 78 GMQVEVSKYTE 88
G Q +V+ E
Sbjct: 258 GYQTDVTARKE 268
>gi|407009016|gb|EKE24251.1| hypothetical protein ACD_6C00184G0004 [uncultured bacterium]
Length = 859
Score = 62.0 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 5/82 (6%)
Query: 5 TGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTV 63
T E++G C FLQGP+TD +++ ++ AV+ K + +Y KDG+ FWN LT+
Sbjct: 337 TAAEVLGQSCF----FLQGPDTDPDQIALLKQAVKEQKEIQVTIKSYCKDGSWFWNRLTI 392
Query: 64 TPIKDDSGKTIKFIGMQVEVSK 85
PI D +G F+G+Q ++++
Sbjct: 393 GPIFDQTGTCTHFLGIQEDITQ 414
>gi|422415281|ref|ZP_16492238.1| blue-light photoreceptor [Listeria innocua FSL J1-023]
gi|313624586|gb|EFR94568.1| blue-light photoreceptor [Listeria innocua FSL J1-023]
Length = 253
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 52/81 (64%), Gaps = 6/81 (7%)
Query: 5 TGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLL-NYKKDGTPFWNLLTV 63
T +E IG C FLQG +TDK E+ KIR A+ N KS LL NY+K+GT F N LT+
Sbjct: 47 TKEEAIGSN--C-HFLQGDDTDKEEIAKIRHAI-NEKSTANVLLKNYRKNGTSFMNELTI 102
Query: 64 TPIKDDSGKTIKFIGMQVEVS 84
PI DD+ + F+G+Q +V+
Sbjct: 103 EPIYDDNDH-LYFVGIQKDVT 122
>gi|222481465|ref|YP_002567701.1| PAS/PAC sensor signal transduction histidine kinase [Halorubrum
lacusprofundi ATCC 49239]
gi|222454841|gb|ACM59104.1| PAS/PAC sensor signal transduction histidine kinase [Halorubrum
lacusprofundi ATCC 49239]
Length = 587
Score = 62.0 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 15/133 (11%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG T + V ++ A+ + L NY+KDG+ FWN +T PI+DDSG F+
Sbjct: 166 RFLQGEATREETVAEMGAAIEAQEPVTVDLRNYRKDGSMFWNRVTTIPIRDDSGTVSNFL 225
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKAL------GSITEVIQTVKRSQS 131
G Q ++ N+K + SL + + Q EKA+ G+I V T +R
Sbjct: 226 GYQQNIT------NEKRYEQD---LSLFKVQSEQSEKAVVITDSDGTIQYVNPTFERVNG 276
Query: 132 HIRALSLDTTNKL 144
+ A ++ T ++
Sbjct: 277 YSPAEAIGRTPRI 289
Score = 39.7 bits (91), Expect = 0.39, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R L+ + DK ++ + + +G + L+N K G + T+TP+ D+ G F+
Sbjct: 288 RILKSSQQDKEFYTELWETITDGDVWKSELVNKTKFGELYEAKQTITPVTDEKGDITHFV 347
Query: 78 GMQVEV-----SKYTEGVNDKALRPN 98
GM ++ ++ T GV ++ +R N
Sbjct: 348 GMTEDITEDVLTRQTLGVLNRVMRHN 373
>gi|213968312|ref|ZP_03396456.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato
T1]
gi|301383444|ref|ZP_07231862.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato
Max13]
gi|302060299|ref|ZP_07251840.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato
K40]
gi|302129936|ref|ZP_07255926.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|213926950|gb|EEB60501.1| sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato
T1]
Length = 425
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ T +ELIG L R LQG +TD +E++R + + G +NY+ DG+P+
Sbjct: 46 MTGYTAEELIG---LSPRILQGADTDPQVIERLRQCLSERLFFEGSTVNYRADGSPYVVE 102
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSL 104
++P++DD+G+ F+ +Q +S ++ L L+ +
Sbjct: 103 WKISPVRDDAGQVCNFVSVQQNISPRIRAEREQHLLAQALNAAF 146
>gi|422587213|ref|ZP_16661884.1| sensory box/GGDEF domain-containing protein [Pseudomonas syringae
pv. morsprunorum str. M302280]
gi|330872987|gb|EGH07136.1| sensory box/GGDEF domain-containing protein [Pseudomonas syringae
pv. morsprunorum str. M302280]
Length = 425
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ T +ELIG L R LQG +TD +E++R + + G +NY+ DG+P+
Sbjct: 46 MTGYTAEELIG---LSPRILQGADTDPQVIERLRQCLSERLFFEGSTVNYRADGSPYVVE 102
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSL 104
++P++DD+G+ F+ +Q +S ++ L L+ +
Sbjct: 103 WKISPVRDDAGQVCNFVSVQQNISPRIRAEREQHLLAQALNAAF 146
>gi|427409812|ref|ZP_18900014.1| PAS domain S-box protein [Sphingobium yanoikuyae ATCC 51230]
gi|425711945|gb|EKU74960.1| PAS domain S-box protein [Sphingobium yanoikuyae ATCC 51230]
Length = 196
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 41/66 (62%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFL+G T+ + E +RDAV + L+NY+K+GTPF N + V P+ DD G+ F+
Sbjct: 54 RFLRGAGTEAEQTEMLRDAVAQVRPVMVELINYRKNGTPFRNAVMVAPLFDDEGELEFFL 113
Query: 78 GMQVEV 83
G Q+ +
Sbjct: 114 GSQMAI 119
>gi|422297302|ref|ZP_16384940.1| sensor y box/GGDEF domain-containing protein [Pseudomonas avellanae
BPIC 631]
gi|407991307|gb|EKG33195.1| sensor y box/GGDEF domain-containing protein [Pseudomonas avellanae
BPIC 631]
Length = 426
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ T +ELIG L R LQG +TD +E++R + + G +NY+ DG+P+
Sbjct: 46 MTGYTAEELIG---LSPRILQGADTDPQVIERLRQCLSERLFFEGSTVNYRADGSPYVVE 102
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSL 104
++P++DD+G+ F+ +Q +S ++ L L+ +
Sbjct: 103 WKISPVRDDAGQVCNFVSVQQNISPRIRAEREQHLLAQALNAAF 146
>gi|315126286|ref|YP_004068289.1| sensory box protein [Pseudoalteromonas sp. SM9913]
gi|315014800|gb|ADT68138.1| sensory box protein [Pseudoalteromonas sp. SM9913]
Length = 579
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78
FLQG ++DKN +E IR ++N + G +LNYKK G+ +W L++ P+ + GK +I
Sbjct: 300 FLQGKDSDKNMIETIRTHLKNRTPFYGEILNYKKSGSAYWTSLSINPVIRE-GKLENYIA 358
Query: 79 MQVEVSK 85
+Q ++S+
Sbjct: 359 IQADISE 365
>gi|344342355|ref|ZP_08773226.1| diguanylate cyclase with PAS/PAC sensor [Marichromatium purpuratum
984]
gi|343805691|gb|EGV23586.1| diguanylate cyclase with PAS/PAC sensor [Marichromatium purpuratum
984]
Length = 429
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 8 ELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIK 67
ELIG R LQG T++ ++++R + G+ + G+ +NY+KDGTP+W +TPI+
Sbjct: 65 ELIG---RTPRILQGERTERAVLDRLRHNLEQGEEFSGQTVNYRKDGTPYWVSWNITPIR 121
Query: 68 DDSGKTIKFIGMQVEVSK 85
D G F Q +V++
Sbjct: 122 DPDGSIRYFFSNQKDVTE 139
>gi|257487298|ref|ZP_05641339.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
syringae pv. tabaci str. ATCC 11528]
gi|422679749|ref|ZP_16738022.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae
pv. tabaci str. ATCC 11528]
gi|331009096|gb|EGH89152.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae
pv. tabaci str. ATCC 11528]
Length = 425
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ + LIG L R LQGP+TD+ +E++R + + G +NY+ DG+P+
Sbjct: 46 MTGYAAEALIG---LSPRILQGPDTDRQVIERMRQCLSESLFFEGSTVNYRADGSPYVVE 102
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVS 84
++P++DD+G F+ +Q +S
Sbjct: 103 WKISPVRDDAGAVCNFVSVQQNIS 126
>gi|448320230|ref|ZP_21509718.1| bacterio-opsin activator [Natronococcus amylolyticus DSM 10524]
gi|445606636|gb|ELY60540.1| bacterio-opsin activator [Natronococcus amylolyticus DSM 10524]
Length = 618
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQG ++D + ++R + + L+NY+KDGT FWN +T+ P+++ G+T ++
Sbjct: 167 RLLQGEDSDPEAIAEMRRGIGEERPVTVELVNYRKDGTAFWNEVTIAPVRNGDGETTHYV 226
Query: 78 GMQVEVSKYTEG 89
G Q +V+ E
Sbjct: 227 GFQNDVTPRKEA 238
>gi|298159585|gb|EFI00630.1| diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with
PAS/PAC sensor(s) [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
Length = 425
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ + LIG L R LQGP+TD+ +E++R + + G +NY+ DG+P+
Sbjct: 46 MTGYAAEALIG---LSPRILQGPDTDRQVIERMRQCLSESLFFEGSTVNYRADGSPYVVE 102
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVS 84
++P++DD+G F+ +Q +S
Sbjct: 103 WKISPVRDDAGAVCNFVSVQQNIS 126
>gi|254414962|ref|ZP_05028725.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196178109|gb|EDX73110.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 1393
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 23/133 (17%)
Query: 1 MSDPTGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFW 58
M+ T KE+IG C RF Q P+ ++ V K+ A++ + L NY+KDG+ FW
Sbjct: 614 MTGYTAKEVIGHNC-----RFWQEPDYNQAGVTKLATAIQEQRECHVILQNYRKDGSTFW 668
Query: 59 NLLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGS 118
N L V+P+ D G F+G+Q +++K + ++AL RQ E+ L S
Sbjct: 669 NELYVSPVFDGDGYLTHFVGIQTDITKRKQA--EEAL--------------RQSEEKLDS 712
Query: 119 ITEVIQTVKRSQS 131
I + V S S
Sbjct: 713 ILRSLDDVVWSAS 725
>gi|344201766|ref|YP_004786909.1| multi-sensor signal transduction histidine kinase [Muricauda
ruestringensis DSM 13258]
gi|343953688|gb|AEM69487.1| multi-sensor signal transduction histidine kinase [Muricauda
ruestringensis DSM 13258]
Length = 848
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 74/136 (54%), Gaps = 14/136 (10%)
Query: 5 TGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVT 64
T +E+IG C+ FLQ + + EV+ I +A+ + NYKKDGT FWN L++T
Sbjct: 185 TSEEVIGKN--CN-FLQLDDRQQQEVQIIGEALSTQSPCHVEIRNYKKDGTLFWNELSIT 241
Query: 65 PIKDDSGKTIKFIGMQVEVSKYTEGVNDKALR--PNGLSKSLIRYDARQKEKALGSITEV 122
P++D G+T FIG+Q +V TE N + LR N + + +I K+K L I +
Sbjct: 242 PVRDFHGETTHFIGIQNDV---TERKNLEFLRKAKNDVLEMII------KKKPLPDIFDR 292
Query: 123 IQTVKRSQSHIRALSL 138
IQ V Q I +++
Sbjct: 293 IQGVLEQQMRIGTVAI 308
>gi|421857430|ref|ZP_16289766.1| hypothetical protein ACRAD_51_00370 [Acinetobacter radioresistens
DSM 6976 = NBRC 102413]
gi|403187158|dbj|GAB75967.1| hypothetical protein ACRAD_51_00370 [Acinetobacter radioresistens
DSM 6976 = NBRC 102413]
Length = 855
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 45/68 (66%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
FLQGPET+ ++ ++ A++ K + NY+KDG+ FWN L + P+ D++G+ F+
Sbjct: 347 HFLQGPETEAEKIALVQRALKEHKEIQVTVKNYRKDGSWFWNRLMLGPVFDEAGRCTHFL 406
Query: 78 GMQVEVSK 85
G+Q ++++
Sbjct: 407 GIQEDITQ 414
>gi|358459156|ref|ZP_09169358.1| putative PAS/PAC sensor protein [Frankia sp. CN3]
gi|357077644|gb|EHI87101.1| putative PAS/PAC sensor protein [Frankia sp. CN3]
Length = 603
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 66/129 (51%), Gaps = 9/129 (6%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP +D ++ A R + +LNY+KDG+ FW+ + + P+ D G+ F+
Sbjct: 67 RFLQGPRSDPAAAARLGAAQRERRPTRVEILNYRKDGSTFWSEIALAPVLDRDGRLTHFV 126
Query: 78 GMQVEVSKYTEG--------VNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQ-TVKR 128
G+Q +V+ E V ++ R + + A + + LG +T+V+ +++
Sbjct: 127 GVQSDVTDRVEARARREELLVREQQARSTAEWAARVERAAHDRLELLGQVTDVMSGALRQ 186
Query: 129 SQSHIRALS 137
+ +RAL+
Sbjct: 187 GPAALRALA 195
>gi|398307975|ref|ZP_10511449.1| sensory box protein [Bacillus mojavensis RO-H-1]
Length = 261
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD EV+ IR ++N + ++ NYKKDGT FWN L + P++ + KT F+
Sbjct: 63 RFLQGKDTDAGEVDNIRAGLQNKEPVTVQIQNYKKDGTMFWNELNIDPLEIED-KTY-FV 120
Query: 78 GMQVEVSKYTE 88
G+Q +++K E
Sbjct: 121 GIQKDITKQKE 131
>gi|326802470|ref|YP_004320289.1| PAS/PAC sensor signal transduction histidine kinase
[Sphingobacterium sp. 21]
gi|326553234|gb|ADZ81619.1| PAS/PAC sensor signal transduction histidine kinase
[Sphingobacterium sp. 21]
Length = 520
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 5/114 (4%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + ++ + + I+ A+ G+ + NYKKDG+ FWN L + PI+D+ +I
Sbjct: 70 RFLQGNDDNEEQKKVIKTALHLGQPCEIEIKNYKKDGSLFWNQLRLQPIRDEENNVTYYI 129
Query: 78 GMQVEVSKYTEGVNDKALRPNGL--SKSLIRYDARQKEKALGSITEVIQTVKRS 129
G+Q +V++ + ++ LR L K+L+ +D E G +T VI TV+ S
Sbjct: 130 GVQNDVTRLK--LTNQQLRVEKLKVKKTLVEHDNNLSEDE-GLLTAVIDTVRDS 180
>gi|254410456|ref|ZP_05024235.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
gi|196182662|gb|EDX77647.1| PAS fold family [Coleofasciculus chthonoplastes PCC 7420]
Length = 2020
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + ++K++ A++N + L N +KDGT FWN L+++PI+D GK +I
Sbjct: 374 RFLQGDNQQQPGLDKLKAALKNEQDCHVILQNTRKDGTRFWNELSISPIRDRHGKLTHYI 433
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLI 105
G+Q ++S+ + ++ R GLS ++
Sbjct: 434 GIQTDISERRQAEQERD-RIFGLSVDML 460
>gi|422403613|ref|ZP_16480670.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae
pv. glycinea str. race 4]
gi|330874463|gb|EGH08612.1| sensory box-containing diguanylate cyclase [Pseudomonas syringae
pv. glycinea str. race 4]
Length = 389
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ + LIG L R LQGP+TD+ +E++R + + G +NY+ DG+P+
Sbjct: 10 MTGYAAEALIG---LSPRILQGPDTDRQVIERMRQCLSESLFFEGSTVNYRADGSPYVVE 66
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVS 84
++P++DD+G F+ +Q +S
Sbjct: 67 WKISPVRDDAGAVCNFVSVQQNIS 90
>gi|89068007|ref|ZP_01155424.1| sensory box histidine kinase [Oceanicola granulosus HTCC2516]
gi|89046246|gb|EAR52303.1| sensory box histidine kinase [Oceanicola granulosus HTCC2516]
Length = 341
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKD-DSGKTIKF 76
RFLQG +T K +V ++R+AV G+ +LNY+ +G PF N L ++PI D ++G+ F
Sbjct: 64 RFLQGEKTRKADVARLREAVATGEDVSLEILNYRANGEPFTNALLISPILDSETGEATLF 123
Query: 77 IGMQVEV 83
+G+Q E+
Sbjct: 124 LGLQREI 130
>gi|421504950|ref|ZP_15951890.1| putative PAS/PAC sensor protein [Pseudomonas mendocina DLHK]
gi|400344173|gb|EJO92543.1| putative PAS/PAC sensor protein [Pseudomonas mendocina DLHK]
Length = 148
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLL-NYKKDGTPFWNLLTVTPIKDDSGKTIKF 76
RFLQG + + ++ IRDAV+ K C +++ NY+KDG+ FWN L++TP+ ++S + +
Sbjct: 54 RFLQGNDRAQIGLQAIRDAVKAHKP-CRQIIRNYRKDGSAFWNELSITPVLNESDQLTYY 112
Query: 77 IGMQVEVSKYTEG 89
IG+Q +V++ E
Sbjct: 113 IGIQKDVTEQVEA 125
>gi|448331268|ref|ZP_21520534.1| HTR-like protein [Natrinema versiforme JCM 10478]
gi|445609551|gb|ELY63349.1| HTR-like protein [Natrinema versiforme JCM 10478]
Length = 717
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 42/67 (62%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +T + V ++R+AV +S L NY+ DGT FWN + + P+ DD+G F+
Sbjct: 317 RFLQGEQTREEPVAELRNAVEKRESVTVELRNYRADGTEFWNRVRIAPLFDDNGDIEYFV 376
Query: 78 GMQVEVS 84
G Q +V+
Sbjct: 377 GFQDDVT 383
>gi|395494345|ref|ZP_10425924.1| sensor histidine kinase [Sphingomonas sp. PAMC 26617]
Length = 207
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFL GP T+ E+IR VR + +LNYK++G PF N + V PI D++ + F+
Sbjct: 61 RFLSGPATEPWLTEEIRRGVREHRPVLVEILNYKRNGHPFRNAVLVAPIYDENDALLYFL 120
Query: 78 GMQVEV 83
G Q+E+
Sbjct: 121 GSQIEI 126
>gi|146308304|ref|YP_001188769.1| putative PAS/PAC sensor protein [Pseudomonas mendocina ymp]
gi|145576505|gb|ABP86037.1| putative PAS/PAC sensor protein [Pseudomonas mendocina ymp]
Length = 148
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLL-NYKKDGTPFWNLLTVTPIKDDSGKTIKF 76
RFLQG + + ++ IRDAV+ K C +++ NY+KDG+ FWN L++TP+ ++S + +
Sbjct: 54 RFLQGNDRAQIGLQAIRDAVKAHKP-CRQIIRNYRKDGSAFWNELSITPVLNESDQLTYY 112
Query: 77 IGMQVEVSKYTEG 89
IG+Q +V++ E
Sbjct: 113 IGIQKDVTEQVEA 125
>gi|448507886|ref|ZP_21615186.1| histidine kinase [Halorubrum distributum JCM 9100]
gi|448518582|ref|ZP_21617659.1| histidine kinase [Halorubrum distributum JCM 10118]
gi|445697823|gb|ELZ49880.1| histidine kinase [Halorubrum distributum JCM 9100]
gi|445705163|gb|ELZ57067.1| histidine kinase [Halorubrum distributum JCM 10118]
Length = 502
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 66/121 (54%), Gaps = 5/121 (4%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+T + ++IR + +S +LNY+ +G FWN L + P+++++ +T F+
Sbjct: 216 RFLQGPDTAEETTDEIRAGLDAERSVDVDILNYRANGQKFWNRLQIEPLRNEADETTHFV 275
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRSQSHIRALS 137
G Q ++++ + ++ L + ++ ++ R K + ++++ +S RAL
Sbjct: 276 GFQTDITE--RKIRERRLE---VMARVLNHNLRNKMNLISGYADLLRDAPDEESQRRALD 330
Query: 138 L 138
+
Sbjct: 331 V 331
>gi|310821898|ref|YP_003954256.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
gi|309394970|gb|ADO72429.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
Length = 899
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 41/66 (62%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78
L GP TD + I A++ G+ +LNY+KDG PFWN + P++D+ G+ ++F+
Sbjct: 279 LLYGPGTDPAVISAIHQAIQRGEGATFEMLNYRKDGEPFWNHSDIQPVRDEHGRLVQFVS 338
Query: 79 MQVEVS 84
++ +V+
Sbjct: 339 IESDVT 344
>gi|336253112|ref|YP_004596219.1| PAS/PAC sensor protein [Halopiger xanaduensis SH-6]
gi|335337101|gb|AEH36340.1| putative PAS/PAC sensor protein [Halopiger xanaduensis SH-6]
Length = 658
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 45/72 (62%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +++ + + ++ A+ + L NY+KDGT FWN +T+ P+++D+G+ ++
Sbjct: 182 RFLQGGDSNPDAIAEMAAAIDEDRPVTVELENYRKDGTEFWNEVTIAPVRNDAGEVTNYV 241
Query: 78 GMQVEVSKYTEG 89
G Q +V+ E
Sbjct: 242 GFQNDVTARKEA 253
>gi|449095476|ref|YP_007427967.1| blue light GTP-binding receptor [Bacillus subtilis XF-1]
gi|449029391|gb|AGE64630.1| blue light GTP-binding receptor [Bacillus subtilis XF-1]
Length = 261
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 6/73 (8%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTP--IKDDSGKTIK 75
RFLQG TD E E IR A++N + ++ NYKKDGT FWN L + P I+D +
Sbjct: 63 RFLQGKHTDPAEAENIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPMVIEDKT----Y 118
Query: 76 FIGMQVEVSKYTE 88
F+G+Q +++K E
Sbjct: 119 FVGIQKDITKQKE 131
>gi|416018259|ref|ZP_11565253.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
syringae pv. glycinea str. B076]
gi|416025461|ref|ZP_11569195.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
syringae pv. glycinea str. race 4]
gi|320323008|gb|EFW79098.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
syringae pv. glycinea str. B076]
gi|320329869|gb|EFW85857.1| sensory box-containing diguanylate cyclase, putative [Pseudomonas
syringae pv. glycinea str. race 4]
Length = 380
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ + LIG L R LQGP+TD+ +E++R + + G +NY+ DG+P+
Sbjct: 1 MTGYAAEALIG---LSPRILQGPDTDRQVIERMRQCLSESLFFEGSTVNYRADGSPYVVE 57
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVS 84
++P++DD+G F+ +Q +S
Sbjct: 58 WKISPVRDDAGAVCNFVSVQQNIS 81
>gi|393722346|ref|ZP_10342273.1| sensor histidine kinase [Sphingomonas sp. PAMC 26605]
Length = 207
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFL GP T+ E+IR VR + +LNYK+ G PF N + V PI D++ + F+
Sbjct: 61 RFLSGPATEPWLTEEIRRGVREHRPVLVEILNYKRSGQPFRNAVLVAPIYDENDALLYFL 120
Query: 78 GMQVEV 83
G Q+E+
Sbjct: 121 GSQIEI 126
>gi|157835749|pdb|2PR5|A Chain A, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (dark Structure)
gi|157835750|pdb|2PR5|B Chain B, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (dark Structure)
gi|157835751|pdb|2PR6|A Chain A, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (light Structure)
gi|157835752|pdb|2PR6|B Chain B, Structural Basis For Light-dependent Signaling In The
Dimeric Lov Photosensor Ytva (light Structure)
Length = 132
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD EV+ IR A++N + ++ NYKKDGT FWN L + P++ + KT F+
Sbjct: 48 RFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPMEIED-KTY-FV 105
Query: 78 GMQVEVSKYTE 88
G+Q +++K E
Sbjct: 106 GIQNDITKQKE 116
>gi|427725026|ref|YP_007072303.1| PAS/PAC and GAF sensor-containing diguanylate
cyclase/phosphodiesterase [Leptolyngbya sp. PCC 7376]
gi|427356746|gb|AFY39469.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF
sensor(s) [Leptolyngbya sp. PCC 7376]
Length = 1052
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 42/67 (62%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78
FL+G +T+K + K+RDAV GK L NY+K G FWN L + P++D G FIG
Sbjct: 414 FLRGEQTEKASLNKLRDAVLQGKPCHVILRNYRKSGDMFWNDLQIFPVQDTDGTLTHFIG 473
Query: 79 MQVEVSK 85
+Q ++++
Sbjct: 474 IQKDITE 480
>gi|357125813|ref|XP_003564584.1| PREDICTED: protein TWIN LOV 1-like [Brachypodium distachyon]
Length = 396
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 17 SRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI-KDDSGKTIK 75
+R QG TD+ V +RDAVR +++ +LNY++DG P W LL V P+ G+ +
Sbjct: 74 ARLFQGAATDRAAVAGVRDAVRCQRAHQVAILNYRRDGAPHWVLLHVAPVFHAHDGRVLH 133
Query: 76 FIGMQV 81
F+ +QV
Sbjct: 134 FLAVQV 139
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 66/129 (51%), Gaps = 19/129 (14%)
Query: 7 KELIGC-CLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTP 65
+E++GC C RFL GP T +E+I + ++ LLNY+KDG F +LL V+P
Sbjct: 283 EEILGCNC----RFLNGPGTSLEVLEEINRNICCEQACTVHLLNYRKDGLAFPDLLHVSP 338
Query: 66 IKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQT 125
I++ SGK + + ++ S + NGLS + + A+G++ +++
Sbjct: 339 IRNASGKVAFHVWVHLDESIKHDF--------NGLSPEVWQL------GAVGAVRVAVRS 384
Query: 126 VKRSQSHIR 134
+ S S +R
Sbjct: 385 LSASGSLLR 393
>gi|299115347|emb|CBN74167.1| aureochrome 2 [Ectocarpus siliculosus]
Length = 441
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP+TD + V KIR + G L YK DGT FWN + V +++ K I ++
Sbjct: 318 RFLQGPDTDPDAVAKIRKGIEEGSDTSVYLRQYKADGTVFWNHVFVAALRNSEHKIINYV 377
Query: 78 GMQVEVSK 85
G+Q + K
Sbjct: 378 GIQHPLDK 385
>gi|159043684|ref|YP_001532478.1| putative signal transduction histidine kinase [Dinoroseobacter
shibae DFL 12]
gi|157911444|gb|ABV92877.1| putative signal transduction histidine kinase [Dinoroseobacter
shibae DFL 12]
Length = 338
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 39/67 (58%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD +V K+R A+ + +LNY+ G PF N L + P+K D GK FI
Sbjct: 62 RFLQGSMTDDADVAKLRRAIEREEDVTVDILNYRASGEPFLNRLIIAPVKSDDGKCHYFI 121
Query: 78 GMQVEVS 84
G+Q +S
Sbjct: 122 GIQKAMS 128
>gi|448467413|ref|ZP_21599425.1| bacterio-opsin activator [Halorubrum kocurii JCM 14978]
gi|445812289|gb|EMA62283.1| bacterio-opsin activator [Halorubrum kocurii JCM 14978]
Length = 555
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 43/67 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG T + V ++R A+ NG+ L NY++DG FWN +T+ P++D++ + ++
Sbjct: 83 RFLQGEATREKPVRQMRAAIENGEPTTVELRNYRRDGELFWNEVTLAPLRDEADEIAYYV 142
Query: 78 GMQVEVS 84
G Q +V+
Sbjct: 143 GFQQDVT 149
>gi|293602568|ref|ZP_06685013.1| diguanylate cyclase with PAS/PAC sensor [Achromobacter piechaudii
ATCC 43553]
gi|292819044|gb|EFF78080.1| diguanylate cyclase with PAS/PAC sensor [Achromobacter piechaudii
ATCC 43553]
Length = 441
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 9/88 (10%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPF--- 57
M+ + +EL G L R LQGP TD +E +R ++ G+ + GR NY+KDG+ +
Sbjct: 43 MTGYSLEELRGRSL---RILQGPATDPAVIESLRTCLKEGRYFEGRATNYRKDGSDYIVR 99
Query: 58 WNLLTVTPIKDDSGKTIKFIGMQVEVSK 85
WN ++PI D SG F+ +Q ++S+
Sbjct: 100 WN---ISPIHDASGAVTHFVSVQEDISE 124
>gi|304393244|ref|ZP_07375172.1| sensory box histidine kinase [Ahrensia sp. R2A130]
gi|303294251|gb|EFL88623.1| sensory box histidine kinase [Ahrensia sp. R2A130]
Length = 325
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG T V IR+ +R+ + L NY+ +G FWN L+++PI DD GK +I
Sbjct: 50 RFLQGEGTSPEHVTLIREGIRHQRDVEVVLKNYRANGRSFWNQLSLSPIFDDDGKLTYYI 109
Query: 78 GMQVEV 83
G+Q EV
Sbjct: 110 GVQQEV 115
>gi|330501334|ref|YP_004378203.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
gi|328915620|gb|AEB56451.1| diguanylate cyclase/phosphodiesterase [Pseudomonas mendocina NK-01]
Length = 1274
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFL G + + E++ +R A+R+G+S + NY+KDG PFWN + + P++D+ G + F+
Sbjct: 383 RFLLGKDRVQLELQPLRAALRDGRSGHAVVRNYRKDGKPFWNEVVLAPMRDEQGIS-HFV 441
Query: 78 GMQVEVSKYTE 88
G+Q +V++ E
Sbjct: 442 GLQHDVTERVE 452
>gi|385265922|ref|ZP_10044009.1| PAS fold protein [Bacillus sp. 5B6]
gi|385150418|gb|EIF14355.1| PAS fold protein [Bacillus sp. 5B6]
Length = 261
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 7/89 (7%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ + +E++G C RFLQ ETD+ EV KIR ++ + RL N KKDGTPFWN
Sbjct: 49 MTGYSSEEILGKNC----RFLQSKETDRQEVAKIRKSLNQKEKITVRLKNVKKDGTPFWN 104
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTE 88
L + P+ + + F+G Q ++++ E
Sbjct: 105 ELNIDPLYVED--KLYFVGFQKDITEQKE 131
>gi|384086439|ref|ZP_09997614.1| hypothetical protein AthiA1_13201 [Acidithiobacillus thiooxidans
ATCC 19377]
Length = 537
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 3 DPTGKELIGCCLL-CSRF----LQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPF 57
+P+ + G L SRF LQGP TD + +I +A+ + GRLLNY++DG F
Sbjct: 243 NPSFSRMTGYTLAEISRFGLHHLQGPRTDPRTLTEIDEALCGQGFFNGRLLNYRRDGQTF 302
Query: 58 WNLLTVTPIKDDSGKTIKFIGMQVEVS 84
WN L++ PI +G ++G+Q +V+
Sbjct: 303 WNHLSIIPIYQRTGAISHYVGIQRDVT 329
>gi|119493194|ref|ZP_01624069.1| hypothetical protein L8106_15744 [Lyngbya sp. PCC 8106]
gi|119452759|gb|EAW33936.1| hypothetical protein L8106_15744 [Lyngbya sp. PCC 8106]
Length = 990
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLL-NYKKDGTPFWNLLTVTPIKDDSGKTIKF 76
RFLQG + ++ E+ IR A+ + K C +L NY+KDG+ FWN L ++P+ ++ GK F
Sbjct: 372 RFLQGKDRNQPEINIIRAAI-SAKKECNVVLRNYRKDGSLFWNELFISPVFNNKGKLTNF 430
Query: 77 IGMQVEVSK 85
IG+Q ++S+
Sbjct: 431 IGIQKDISE 439
>gi|350267212|ref|YP_004878519.1| sensory box protein [Bacillus subtilis subsp. spizizenii TU-B-10]
gi|349600099|gb|AEP87887.1| sensory box protein [Bacillus subtilis subsp. spizizenii TU-B-10]
Length = 261
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD EV+ IR A++N + ++ NYKKDGT FWN L++ P++ + KT F+
Sbjct: 63 RFLQGKHTDPAEVDNIRIALQNKEPVTVQIQNYKKDGTMFWNELSIDPLEIED-KTY-FV 120
Query: 78 GMQVEVSKYTE 88
G+Q ++++ E
Sbjct: 121 GIQKDITQQKE 131
>gi|422665380|ref|ZP_16725252.1| PAS:GGDEF protein, partial [Pseudomonas syringae pv. aptata str.
DSM 50252]
gi|330975798|gb|EGH75864.1| PAS:GGDEF protein [Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 186
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ T + LIG R LQGP+TD +E++R+ + + G +NY+ DG+P+
Sbjct: 46 MTGYTAEALIGAS---PRILQGPDTDPQVIERMRECLSESLFFEGSTVNYRADGSPYIVE 102
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSK 85
++P++DD+G F+ +Q +S
Sbjct: 103 WKISPVRDDAGTVCNFVSVQQNISP 127
>gi|81300525|ref|YP_400733.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
[Synechococcus elongatus PCC 7942]
gi|81169406|gb|ABB57746.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Synechococcus elongatus PCC 7942]
Length = 1238
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCG-RLLNYKKDGTPFWNLLTVTPIKDDSGKTIKF 76
RFLQG ET + E+E++R A+ G +YC L +Y+KDG+ FWN +++ P++D G
Sbjct: 729 RFLQGLETQQAELEEMRRALEEG-TYCEVTLRSYRKDGSLFWNQISLAPVRDQKGHLTHM 787
Query: 77 IGMQVEVSK 85
+ Q +VS+
Sbjct: 788 VASQTDVSE 796
>gi|56752384|ref|YP_173085.1| hypothetical protein syc2375_d [Synechococcus elongatus PCC 6301]
gi|56687343|dbj|BAD80565.1| hypothetical protein [Synechococcus elongatus PCC 6301]
Length = 1238
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCG-RLLNYKKDGTPFWNLLTVTPIKDDSGKTIKF 76
RFLQG ET + E+E++R A+ G +YC L +Y+KDG+ FWN +++ P++D G
Sbjct: 729 RFLQGLETQQAELEEMRRALEEG-TYCEVTLRSYRKDGSLFWNQISLAPVRDQKGHLTHM 787
Query: 77 IGMQVEVSK 85
+ Q +VS+
Sbjct: 788 VASQTDVSE 796
>gi|313201890|ref|YP_004040548.1| response regulator receiver modulated PAS/PAC sensor-containing
diguanylate cyclase/phosphodiesterase [Methylovorus sp.
MP688]
gi|312441206|gb|ADQ85312.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Methylovorus sp. MP688]
Length = 821
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIK-F 76
RFLQG + ++ E+EKIR A+R L NY+KDG+ FWN L V P+ D G + F
Sbjct: 309 RFLQGHDREQPELEKIRTAIRERCPGYAILRNYRKDGSLFWNELYVAPVPDPHGGEPRYF 368
Query: 77 IGMQ---VEVSKYTEGVNDKA 94
+G+Q E+ +Y E + +A
Sbjct: 369 VGVQKDITEIRQYQEALERQA 389
>gi|253999917|ref|YP_003051980.1| response regulator receiver modulated PAS/PAC sensor-containing
diguanylate cyclase/phosphodiesterase [Methylovorus
glucosetrophus SIP3-4]
gi|253986596|gb|ACT51453.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Methylovorus glucosetrophus SIP3-4]
Length = 821
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIK-F 76
RFLQG + ++ E+EKIR A+R L NY+KDG+ FWN L V P+ D G + F
Sbjct: 309 RFLQGHDREQPELEKIRTAIRERCPGYAILRNYRKDGSLFWNELYVAPVPDPHGGEPRYF 368
Query: 77 IGMQ---VEVSKYTEGVNDKA 94
+G+Q E+ +Y E + +A
Sbjct: 369 VGVQKDITEIRQYQEALERQA 389
>gi|347976015|ref|XP_003437337.1| unnamed protein product [Podospora anserina S mat+]
gi|170940195|emb|CAP65422.1| unnamed protein product [Podospora anserina S mat+]
Length = 723
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIK-F 76
RF QG TD ++ +A+ G L+NY+KDGTPFWNLL V P+ + G TI+ F
Sbjct: 325 RFFQGICTDPEATRRLSEAISTGHEASELLINYRKDGTPFWNLLFVCPLFE--GGTIRYF 382
Query: 77 IGMQVEVSK 85
+G Q+ VS+
Sbjct: 383 LGAQINVSE 391
>gi|338998341|ref|ZP_08637015.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Halomonas sp. TD01]
gi|338764658|gb|EGP19616.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Halomonas sp. TD01]
Length = 816
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 45/71 (63%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ETD ++K+R + + + + N++++G PFWN L ++P++D +G F+
Sbjct: 300 RFLQGEETDPATLKKLRKGIYSQQEVHVVIRNHRRNGMPFWNDLYISPVRDATGAVTHFV 359
Query: 78 GMQVEVSKYTE 88
G+Q +++ E
Sbjct: 360 GVQNDITAQRE 370
>gi|85373799|ref|YP_457861.1| sensory box histidine kinase [Erythrobacter litoralis HTCC2594]
gi|123005050|sp|Q2NB77.1|LVHK2_ERYLH RecName: Full=Blue-light-activated histidine kinase 2; AltName:
Full=EL346-LOV-histidine kinase; Short=EL346-LOV-HK
gi|84786882|gb|ABC63064.1| sensory box histidine kinase [Erythrobacter litoralis HTCC2594]
Length = 346
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD VE++ A+RN + + NY+ DG FWN L + P++D K F+
Sbjct: 56 RFLQGEKTDPGAVERLAKAIRNCEEVEETIYNYRADGEGFWNHLLMGPLEDQDEKCRYFV 115
Query: 78 GMQVEVSK 85
G+QV++ +
Sbjct: 116 GIQVDMGQ 123
>gi|255318187|ref|ZP_05359426.1| two-component response regulator [Acinetobacter radioresistens
SK82]
gi|262379605|ref|ZP_06072761.1| two-component response regulator [Acinetobacter radioresistens
SH164]
gi|255304733|gb|EET83911.1| two-component response regulator [Acinetobacter radioresistens
SK82]
gi|262299062|gb|EEY86975.1| two-component response regulator [Acinetobacter radioresistens
SH164]
Length = 855
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 45/67 (67%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78
FLQGPET+ ++ ++ A++ K + NY+KDG+ FWN L + P+ D++G+ F+G
Sbjct: 348 FLQGPETEAEKIALVQQALKEHKEIQVTVKNYRKDGSWFWNRLMLGPVFDEAGRCTHFLG 407
Query: 79 MQVEVSK 85
+Q ++++
Sbjct: 408 IQEDITQ 414
>gi|406975085|gb|EKD97960.1| hypothetical protein ACD_23C00654G0001 [uncultured bacterium]
Length = 430
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 8 ELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIK 67
EL GC L + LQGP+TD ++ +R ++ + + G +NY+KDG + ++P++
Sbjct: 50 ELRGCTL---QILQGPDTDPAVIDDLRACLKEARYFEGTTINYRKDGASYVVHWNISPVR 106
Query: 68 DDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGL---SKSLIRYDARQK 112
DD G F+ +Q ++S + L L S ++ DAR +
Sbjct: 107 DDEGVLTHFVSVQQDISDLVRAAQENLLLARALDATSDPVVLTDARAR 154
>gi|421465104|ref|ZP_15913792.1| PAS domain S-box protein [Acinetobacter radioresistens WC-A-157]
gi|400204366|gb|EJO35350.1| PAS domain S-box protein [Acinetobacter radioresistens WC-A-157]
Length = 855
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 45/67 (67%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78
FLQGPET+ ++ ++ A++ K + NY+KDG+ FWN L + P+ D++G+ F+G
Sbjct: 348 FLQGPETEAEKIALVQQALKEHKEIQVTVKNYRKDGSWFWNRLMLGPVFDEAGRCTHFLG 407
Query: 79 MQVEVSK 85
+Q ++++
Sbjct: 408 IQEDITQ 414
>gi|186682678|ref|YP_001865874.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
gi|186465130|gb|ACC80931.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
Length = 1403
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQ ++ + + ++R +++ G S L NY KDG FWN L ++PI D++GK FI
Sbjct: 278 RFLQRTDSQQPALNELRSSLQAGTSCKVILRNYSKDGVLFWNELCISPIHDENGKLSHFI 337
Query: 78 GMQVEVSKYTEGVNDKALRPNGLS 101
G+Q ++S+ + + +LR L+
Sbjct: 338 GIQTDISQRKQA--EASLRRQALT 359
>gi|367045084|ref|XP_003652922.1| hypothetical protein THITE_2034824, partial [Thielavia terrestris
NRRL 8126]
gi|347000184|gb|AEO66586.1| hypothetical protein THITE_2034824, partial [Thielavia terrestris
NRRL 8126]
Length = 757
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/84 (41%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
MS KEL+G R LQG TD + ++ A+ +G +LNY+ DGTPFWNL
Sbjct: 301 MSGFRRKELVG---KNGRVLQGVATDPDAARRLSQAIASGAEVTELILNYRPDGTPFWNL 357
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVS 84
L V P+ + G F+G QV VS
Sbjct: 358 LFVCPLM-ERGSVRYFLGAQVNVS 380
>gi|352100624|ref|ZP_08958211.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Halomonas sp. HAL1]
gi|350601044|gb|EHA17099.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Halomonas sp. HAL1]
Length = 927
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 45/71 (63%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD V+ +R+ V + NY++DG+ FWN L ++P++D++G ++
Sbjct: 417 RFLQGEDTDPATVKLLREGVTEQHEVHVVIRNYRRDGSIFWNDLYISPVRDETGDVTHYL 476
Query: 78 GMQVEVSKYTE 88
G+Q +VS+ E
Sbjct: 477 GVQNDVSEQRE 487
>gi|424066357|ref|ZP_17803823.1| sensor y box/GGDEF domain-containing protein domain-containing
protein domain-containing protein [Pseudomonas syringae
pv. avellanae str. ISPaVe013]
gi|408002420|gb|EKG42677.1| sensor y box/GGDEF domain-containing protein domain-containing
protein domain-containing protein [Pseudomonas syringae
pv. avellanae str. ISPaVe013]
Length = 418
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ T + LIG R LQGP+TD +E++R+ + + G +NY+ DG+P+
Sbjct: 46 MTGYTTEALIGAS---PRILQGPDTDPQVIERMRECLSESLFFEGSTVNYRADGSPYIVE 102
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVS 84
++P++DD+G F+ +Q +S
Sbjct: 103 WKISPVRDDAGTVCNFVSVQQNIS 126
>gi|406595687|ref|YP_006746817.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii ATCC
27126]
gi|406373008|gb|AFS36263.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii ATCC
27126]
Length = 958
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 69/130 (53%), Gaps = 10/130 (7%)
Query: 7 KELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI 66
+E+IG C R +QG ET K V++IR A+ + LLNYKKDG+ F+N L +TP+
Sbjct: 480 EEIIGHN--C-RSMQGDETSKQTVDQIRKAIAVREPIETTLLNYKKDGSAFYNRLNLTPV 536
Query: 67 KDDSGKTIKFIGMQVEVS------KYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
K + G+ +IG Q +V+ +Y + +KA L S + + + + I+
Sbjct: 537 KIN-GEVTHYIGFQQDVTQQRQTEQYLQDAREKAEESARLKSSFLASMSHEIRTPIHGIS 595
Query: 121 EVIQTVKRSQ 130
V+Q + S+
Sbjct: 596 GVLQLMASSE 605
>gi|397570935|gb|EJK47540.1| hypothetical protein THAOC_33732 [Thalassiosira oceanica]
Length = 575
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 36/60 (60%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD+ +E I+ AV NG LLNYK DGTPFWN L V ++D + ++
Sbjct: 511 RFLQGNGTDRKAIEVIKTAVANGTDATVCLLNYKADGTPFWNQLFVAALRDSDNCIVNYV 570
>gi|220702749|gb|ACL81173.1| putative blue-light photoreceptor PCMADA3 [Pilobolus crystallinus]
Length = 638
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 18/102 (17%)
Query: 5 TGKELIG--CCLLCSRFLQGPE-----------TDKNEVEKIRDAVRNGKSYCGRLLNYK 51
T KE++G C RFLQ P+ TD V I+ + GK + ++NY+
Sbjct: 120 TNKEIVGKNC-----RFLQSPDGKVTCGSRRQHTDNQAVYHIKGQINQGKEHQASIINYR 174
Query: 52 KDGTPFWNLLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDK 93
KDG PF NL+TV P+ D++ F+G+QV++ + + +K
Sbjct: 175 KDGQPFVNLVTVIPLWDENNTIELFVGLQVDLVEQPNSIIEK 216
>gi|407682658|ref|YP_006797832.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii str.
'English Channel 673']
gi|407244269|gb|AFT73455.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii str.
'English Channel 673']
Length = 958
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 69/130 (53%), Gaps = 10/130 (7%)
Query: 7 KELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI 66
+E+IG C R +QG ET K V++IR A+ + LLNYKKDG+ F+N L +TP+
Sbjct: 480 EEIIGHN--C-RSMQGDETSKQTVDQIRKAIAVREPIETTLLNYKKDGSAFYNRLNLTPV 536
Query: 67 KDDSGKTIKFIGMQVEVS------KYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
K + G+ +IG Q +V+ +Y + +KA L S + + + + I+
Sbjct: 537 KIN-GEVTHYIGFQQDVTQQRQTEQYLQDAREKAEESARLKSSFLASMSHEIRTPIHGIS 595
Query: 121 EVIQTVKRSQ 130
V+Q + S+
Sbjct: 596 GVLQLMASSE 605
>gi|389572124|ref|ZP_10162211.1| ytvA [Bacillus sp. M 2-6]
gi|388428148|gb|EIL85946.1| ytvA [Bacillus sp. M 2-6]
Length = 267
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +T++ +++ IR ++N +L NYKKDGT FWN L + P+ + FI
Sbjct: 63 RFLQGKDTNQEQLDLIRHGIQNKTPITTQLKNYKKDGTFFWNELNIDPLYIEQDDKTFFI 122
Query: 78 GMQVEVSKYTE 88
G Q +++K E
Sbjct: 123 GFQKDITKQKE 133
>gi|254508393|ref|ZP_05120514.1| two-component hybrid sensor and regulator [Vibrio parahaemolyticus
16]
gi|219548706|gb|EED25710.1| two-component hybrid sensor and regulator [Vibrio parahaemolyticus
16]
Length = 1594
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 45/68 (66%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQ + D+ ++++RDA+ N S + NY+KDGT F+N L + P+ ++ G+ FI
Sbjct: 465 RFLQNDDRDQKGIDQLRDAIANQTSCSVVIRNYRKDGTLFYNNLKIDPVFNEQGEMTHFI 524
Query: 78 GMQVEVSK 85
G+Q +V++
Sbjct: 525 GIQTDVTE 532
>gi|254443264|ref|ZP_05056740.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
gi|198257572|gb|EDY81880.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
Length = 900
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78
L+GP T+ + V +R +R GK++ L+ YKK+G P+W + P+ DD GK +FI
Sbjct: 318 LLRGPMTEVDTVNYMRARIRKGKAFHAELVQYKKNGAPYWVRIDGNPLVDDDGKLTRFIS 377
Query: 79 MQVEVSK 85
Q ++++
Sbjct: 378 FQTDITE 384
>gi|423093592|ref|ZP_17081388.1| sensory box protein [Pseudomonas fluorescens Q2-87]
gi|397887815|gb|EJL04298.1| sensory box protein [Pseudomonas fluorescens Q2-87]
Length = 158
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 45/67 (67%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQ + D+ +E IR A++ G + L NY+KDGTPFWN L+++ +K+++ F+
Sbjct: 55 RFLQSGDRDQPSLEHIRKALKEGGACREVLRNYRKDGTPFWNELSLSTVKNEADGRTYFV 114
Query: 78 GMQVEVS 84
G+Q +V+
Sbjct: 115 GVQKDVT 121
>gi|297582818|ref|YP_003698598.1| putative PAS/PAC sensor protein [Bacillus selenitireducens MLS10]
gi|297141275|gb|ADH98032.1| putative PAS/PAC sensor protein [Bacillus selenitireducens MLS10]
Length = 256
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +T V +R+A+R + +LNYKK G PFWNLL + PI + F+
Sbjct: 55 RFLQGDDTSPQTVSILREAIRLMEPVSVEILNYKKSGEPFWNLLHIDPIYLEEEDKYYFV 114
Query: 78 GMQVEVSK 85
G+Q ++++
Sbjct: 115 GIQKDITE 122
>gi|452206471|ref|YP_007486593.1| sensor box histidine kinase [Natronomonas moolapensis 8.8.11]
gi|452082571|emb|CCQ35831.1| sensor box histidine kinase [Natronomonas moolapensis 8.8.11]
Length = 583
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG T V K+R A+ +S L NY+KDGT FWN +T++P+++ G ++
Sbjct: 166 RFLQGDGTRDEPVAKMRAAIDAEQSVTVELRNYRKDGTEFWNRITLSPVENSDGTVTHYL 225
Query: 78 GMQVEVSK 85
G Q +S+
Sbjct: 226 GFQQNISE 233
>gi|448607643|ref|ZP_21659596.1| HTR-like protein [Haloferax sulfurifontis ATCC BAA-897]
gi|445737580|gb|ELZ89112.1| HTR-like protein [Haloferax sulfurifontis ATCC BAA-897]
Length = 369
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 34/63 (53%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFL GPETD V +IR AV G+ + Y DG PF N L V PI+DD G F+
Sbjct: 296 RFLYGPETDPEAVAEIRAAVEAGELISTEIRTYDADGEPFRNRLDVRPIRDDDGAVEFFV 355
Query: 78 GMQ 80
G
Sbjct: 356 GFH 358
>gi|448582617|ref|ZP_21646121.1| bacterio-opsin activator [Haloferax gibbonsii ATCC 33959]
gi|445732265|gb|ELZ83848.1| bacterio-opsin activator [Haloferax gibbonsii ATCC 33959]
Length = 658
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R+LQGP TD V ++R A+ +S LLNY+++G FWN + V P+ G+ ++
Sbjct: 182 RYLQGPNTDPERVAELRRAIEAEESASVELLNYRENGETFWNRVDVAPLSGPDGEVTHYV 241
Query: 78 GMQVEVSK 85
G Q ++++
Sbjct: 242 GFQTDITE 249
>gi|34495841|ref|NP_900056.1| hypothetical protein CV_0386 [Chromobacterium violaceum ATCC 12472]
gi|34101696|gb|AAQ58064.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
12472]
Length = 296
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQGP TD + + ++ A+R+G+ LLNY + GTP+W L + P+ D+SG+ F
Sbjct: 58 RVLQGPLTDPSALLQLSVALRDGRETTVELLNYHRSGTPYWTRLHLLPLFDESGELSHFA 117
Query: 78 GMQVEVS 84
+Q +++
Sbjct: 118 ALQQDIT 124
>gi|385334014|ref|YP_005887963.1| protein containing chemotaxis methyl-accepting receptor, signaling,
PAS fold protein [Marinobacter adhaerens HP15]
gi|311697216|gb|ADQ00088.1| protein containing chemotaxis methyl-accepting receptor, signaling,
PAS fold protein [Marinobacter adhaerens HP15]
Length = 541
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 47/85 (55%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78
FLQGP TD +++IR +R+ + + +LNY ++ P+W L + P+ D+SG +I
Sbjct: 254 FLQGPHTDPETIDQIRQKLRHHQPFYDEVLNYDRNQKPYWVSLAINPVFDESGTLTHYIS 313
Query: 79 MQVEVSKYTEGVNDKALRPNGLSKS 103
+Q V++ E + R +S S
Sbjct: 314 IQANVTETKEKSLEYTRRFEAISDS 338
>gi|309782241|ref|ZP_07676970.1| sensory box/GGDEF domain protein [Ralstonia sp. 5_7_47FAA]
gi|404377936|ref|ZP_10983036.1| diguanylate cyclase (GGDEF) domain-containing protein [Ralstonia
sp. 5_2_56FAA]
gi|308919012|gb|EFP64680.1| sensory box/GGDEF domain protein [Ralstonia sp. 5_7_47FAA]
gi|348615867|gb|EGY65375.1| diguanylate cyclase (GGDEF) domain-containing protein [Ralstonia
sp. 5_2_56FAA]
Length = 416
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 8 ELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIK 67
EL G L R LQGP+TD ++++R + + + G NY+KDG+ + +++P++
Sbjct: 50 ELRGHSL---RILQGPDTDPALIDELRICLEEARLFEGTATNYRKDGSSYTVRWSISPVR 106
Query: 68 DDSGKTIKFIGMQVEVSKYTEG 89
DDSG F+ +Q ++S Y +
Sbjct: 107 DDSGSVTNFVSVQQDISDYEQA 128
>gi|386818016|ref|ZP_10105234.1| PAS sensor protein [Thiothrix nivea DSM 5205]
gi|386422592|gb|EIJ36427.1| PAS sensor protein [Thiothrix nivea DSM 5205]
Length = 158
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%)
Query: 5 TGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVT 64
TG C RFLQG + D+ E KI +A+ N + L NY+KDG+ FWN L VT
Sbjct: 49 TGYSAEECLFKDCRFLQGDDRDQPERSKIHNAILNTEPIQVVLRNYRKDGSMFWNELMVT 108
Query: 65 PIKDDSGKTIKFIGMQVEVSK 85
P D++ +IG+Q ++++
Sbjct: 109 PYFDETEGVTYYIGIQKDITE 129
>gi|389816243|ref|ZP_10207406.1| blue-light photoreceptor [Planococcus antarcticus DSM 14505]
gi|388465236|gb|EIM07555.1| blue-light photoreceptor [Planococcus antarcticus DSM 14505]
Length = 280
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGP T K ++EK++ A+ N + + NY+KD +PFWN L + P+ + + FI
Sbjct: 74 RFLQGPGTAKEDIEKMKKAIANEEKVIVTVQNYRKDDSPFWNRLVIEPVHIEGN--LYFI 131
Query: 78 GMQVEVS 84
G Q +++
Sbjct: 132 GTQTDIT 138
>gi|350563291|ref|ZP_08932113.1| PAS sensor protein [Thioalkalimicrobium aerophilum AL3]
gi|349779155|gb|EGZ33502.1| PAS sensor protein [Thioalkalimicrobium aerophilum AL3]
Length = 147
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + +++ V IR AV K L NY+KDGT FWN L+VTP D K +I
Sbjct: 58 RFLQGNDREQDAVRIIRAAVDANKPVRTVLKNYRKDGTLFWNELSVTPYYDQYDKLTYYI 117
Query: 78 GMQVEVSK 85
G+Q +V++
Sbjct: 118 GIQKDVTE 125
>gi|434391025|ref|YP_007125972.1| PAS/PAC sensor hybrid histidine kinase [Gloeocapsa sp. PCC 7428]
gi|428262866|gb|AFZ28812.1| PAS/PAC sensor hybrid histidine kinase [Gloeocapsa sp. PCC 7428]
Length = 759
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/127 (29%), Positives = 69/127 (54%), Gaps = 5/127 (3%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ T +E++G R LQG +TDK + +IR ++ +S L+NY+KDG+ FW
Sbjct: 278 MTGYTLQEVVG---KTPRLLQGSKTDKETLTRIRTTLQQWQSDVFELVNYRKDGSEFWVE 334
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVS--KYTEGVNDKALRPNGLSKSLIRYDARQKEKALGS 118
L++ PI D++G +I +Q +++ K E + K L ++ +R K++ L
Sbjct: 335 LSIVPIPDEAGWYTHWISVQRDITQRKEVEAMLAKLLLREQQARIATEEASRMKDEFLAV 394
Query: 119 ITEVIQT 125
++ ++T
Sbjct: 395 VSHELRT 401
>gi|358637207|dbj|BAL24504.1| putative signaling protein [Azoarcus sp. KH32C]
Length = 1096
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 40/62 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFL G + D+ +++++RDAVR G L NY+KDGT FWN +++ + D SGK FI
Sbjct: 577 RFLMGDDWDQPDIQRLRDAVREGADARVLLRNYRKDGTLFWNEISLASMHDPSGKVSHFI 636
Query: 78 GM 79
+
Sbjct: 637 AI 638
>gi|297624984|ref|YP_003706418.1| PAS/PAC sensor signal transduction histidine kinase [Truepera
radiovictrix DSM 17093]
gi|297166164|gb|ADI15875.1| PAS/PAC sensor signal transduction histidine kinase [Truepera
radiovictrix DSM 17093]
Length = 465
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +TD+ + +R A+ G+ L NY+KDG FWN L +TPI +G + F+
Sbjct: 57 RFLQGRDTDQAALPALRAAIARGQGIRVELRNYRKDGAMFWNELHITPIW-RAGSLVYFL 115
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKS 103
G+Q +++ ++AL L +
Sbjct: 116 GVQNDITLLKAAQAEQALMSQALEHA 141
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 11/107 (10%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R QGP T + + ++R + G + G +NY+KDG+PF V PI+D G ++
Sbjct: 183 RMFQGPRTSRAVLNRMRRRLGRGGVFQGETINYRKDGSPFILAWHVAPIRDALGSITHWV 242
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQ 124
Q +V+ ++ L L + + AR++++ G + + +Q
Sbjct: 243 STQRDVT-------ERRL----LERQALDISAREQQRIAGELHDALQ 278
>gi|418062703|ref|ZP_12700463.1| PAS sensor protein [Methylobacterium extorquens DSM 13060]
gi|373563749|gb|EHP89917.1| PAS sensor protein [Methylobacterium extorquens DSM 13060]
Length = 151
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 50/91 (54%)
Query: 5 TGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVT 64
TG E RFLQGP TD+ ++ +R A++ G+ G LNY+KDGT + +T
Sbjct: 53 TGYEAEEVLGRSPRFLQGPGTDRAVLDGLRAAMKAGEMAQGEALNYRKDGTTYVVEWLIT 112
Query: 65 PIKDDSGKTIKFIGMQVEVSKYTEGVNDKAL 95
P++D G+ ++ Q +V+ G + +AL
Sbjct: 113 PVRDTEGRITHWVSAQRDVTGRRAGEDRQAL 143
>gi|429330693|ref|ZP_19211476.1| sensory box protein [Pseudomonas putida CSV86]
gi|428764596|gb|EKX86728.1| sensory box protein [Pseudomonas putida CSV86]
Length = 153
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLL-NYKKDGTPFWNLLTVTPIKDDSGKTIKF 76
RFLQG E D+ +IR A+ + + C +L NY+KDG+ FWN L++TP+ +++ + F
Sbjct: 55 RFLQGEERDQPARTRIRQAL-DSRQPCREILRNYRKDGSAFWNELSITPLFNEADQLTYF 113
Query: 77 IGMQVEVSKYTEG 89
IG+Q +V+ E
Sbjct: 114 IGVQKDVTVQVEA 126
>gi|147765804|emb|CAN75623.1| hypothetical protein VITISV_039336 [Vitis vinifera]
Length = 439
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
MS + +E+IG R QGP T + + +I++A++ ++ LLNY+KDGTP W L
Sbjct: 88 MSGYSKEEVIG---KNGRAFQGPGTSRRSITEIQEAIQEERTIQTILLNYRKDGTPIWML 144
Query: 61 LTVTPI-KDDSGKTIKFIGMQVEVSK 85
++P+ + G+ I F+ +QV +S+
Sbjct: 145 FHMSPVFSKEDGRVIHFVAVQVPMSR 170
>gi|187928260|ref|YP_001898747.1| PAS/PAC sensor containing diguanylate cyclase [Ralstonia pickettii
12J]
gi|187725150|gb|ACD26315.1| diguanylate cyclase with PAS/PAC sensor [Ralstonia pickettii 12J]
Length = 416
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 8 ELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIK 67
EL G L R LQGP+TD ++++R ++ + + G NY+KDG+ + +++P++
Sbjct: 50 ELRGHSL---RILQGPDTDPALIDELRICLKEARLFEGTATNYRKDGSSYTVRWSISPVR 106
Query: 68 DDSGKTIKFIGMQVEVSKYTEG 89
DDSG F+ +Q ++S Y +
Sbjct: 107 DDSGLVTNFVSVQQDISDYEQA 128
>gi|6729194|dbj|BAA89701.1| 145..153:the transposed position of ISY203g in Kazusa
strain~ORF_ID:sll1473-sll1475~a part of
phytochrome-like sequence (sll1473-sll1475) in wild
type [Synechocystis sp. PCC 6803]
gi|6729196|dbj|BAA89702.1| 145..153:the transposed position of ISY203g in Kazusa
strain~ORF_ID:sll1473-sll1475~a part of
phytochrome-like sequence (sll1473-sll1475) in
substrain GT (glucose-tolerant) [Synechocystis sp. PCC
6803]
Length = 107
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 5 TGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVT 64
T +E++G R LQGP+T + E++++R A+ +S ++NY+KDG+ FW ++
Sbjct: 18 TAEEMLGKT---PRVLQGPKTSRTELDRVRQAISQWQSVTVEVINYRKDGSEFWVEFSLV 74
Query: 65 PIKDDSGKTIKFIGMQVEVSK 85
P+ + +G +I +Q +V++
Sbjct: 75 PVANKTGFYTHWIAVQRDVTE 95
>gi|292654498|ref|YP_003534395.1| putative bacterio-opsin activator [Haloferax volcanii DS2]
gi|448293499|ref|ZP_21483605.1| bacterio-opsin activator [Haloferax volcanii DS2]
gi|291372918|gb|ADE05145.1| Putative bacterio-opsin activator [Haloferax volcanii DS2]
gi|445570553|gb|ELY25113.1| bacterio-opsin activator [Haloferax volcanii DS2]
Length = 658
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R+LQGP TD V ++R A+ +S LLNY+ +G FWN + V P+ G+ ++
Sbjct: 182 RYLQGPNTDPERVAELRRAIEAEESASVELLNYRANGETFWNRVDVAPLSGSDGEVTHYV 241
Query: 78 GMQVEVSK 85
G Q ++++
Sbjct: 242 GFQTDITE 249
>gi|448469361|ref|ZP_21600143.1| HTR-like protein [Halorubrum kocurii JCM 14978]
gi|445809404|gb|EMA59447.1| HTR-like protein [Halorubrum kocurii JCM 14978]
Length = 720
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 41/68 (60%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG TD +V +R+A+ + + L NY+KDGT FWN + V P+ D G F+
Sbjct: 319 RFLQGEGTDDEQVAALREAIDDREPVAVELRNYRKDGTEFWNRVRVAPMFDADGDLDLFV 378
Query: 78 GMQVEVSK 85
G Q +V++
Sbjct: 379 GFQDDVTE 386
>gi|359439422|ref|ZP_09229393.1| sensory box protein [Pseudoalteromonas sp. BSi20311]
gi|358025898|dbj|GAA65642.1| sensory box protein [Pseudoalteromonas sp. BSi20311]
Length = 534
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 51/83 (61%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78
FLQG +TDK V++I ++N + + +LN+ K+G P+W +L+V P DD+G+ F+G
Sbjct: 259 FLQGEQTDKETVKRISKNLKNKQPFYEEILNFDKNGVPYWIVLSVNPTFDDNGQHTGFVG 318
Query: 79 MQVEVSKYTEGVNDKALRPNGLS 101
+ ++ + V ++ + + +S
Sbjct: 319 VSSDIREIKRQVLEQINQKDAIS 341
>gi|225424899|ref|XP_002269901.1| PREDICTED: protein TWIN LOV 1 [Vitis vinifera]
Length = 397
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
MS + +E+IG R QGP T + + +I++A++ ++ LLNY+KDGTP W L
Sbjct: 53 MSGYSKEEVIG---KNGRAFQGPGTSRRSITEIQEAIQEERTIQTILLNYRKDGTPIWML 109
Query: 61 LTVTPI-KDDSGKTIKFIGMQVEVSK 85
++P+ + G+ I F+ +QV +S+
Sbjct: 110 FHMSPVFSKEDGRVIHFVAVQVPMSR 135
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 52/76 (68%), Gaps = 5/76 (6%)
Query: 8 ELIGC-CLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI 66
E++GC C+ FL G +TD + + +++++++ ++ R+LNY+KD + FWNLL ++P+
Sbjct: 286 EVLGCQCM----FLSGVDTDPSTLLQVKESIQTEQACTVRILNYRKDRSSFWNLLHISPV 341
Query: 67 KDDSGKTIKFIGMQVE 82
++ SGK + +Q+E
Sbjct: 342 RNASGKIAYSVWVQME 357
>gi|435845892|ref|YP_007308142.1| PAS domain S-box [Natronococcus occultus SP4]
gi|433672160|gb|AGB36352.1| PAS domain S-box [Natronococcus occultus SP4]
Length = 616
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 44/72 (61%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R LQG ++D + V ++R + + ++NY+KD T FWN +T+ P+++D+G+ ++
Sbjct: 165 RLLQGEDSDPDAVAEMRAGIEEERPVTVEIVNYRKDDTRFWNEVTIAPVRNDAGELTHYV 224
Query: 78 GMQVEVSKYTEG 89
G Q +V+ E
Sbjct: 225 GFQNDVTARKEA 236
>gi|399521608|ref|ZP_10762348.1| two-component hybrid sensor and regulator [Pseudomonas
pseudoalcaligenes CECT 5344]
gi|399110846|emb|CCH38908.1| two-component hybrid sensor and regulator [Pseudomonas
pseudoalcaligenes CECT 5344]
Length = 148
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLL-NYKKDGTPFWNLLTVTPIKDDSGKTIKF 76
RFLQG + + ++ IR+AV+ K C +++ NY+KDG+ FWN L++TP+ ++S + +
Sbjct: 54 RFLQGTDRAQLGLQAIREAVKANKP-CRQIIRNYRKDGSAFWNELSITPVLNESDQLTYY 112
Query: 77 IGMQVEVSKYTEG 89
IG+Q +V++ E
Sbjct: 113 IGIQKDVTEQVEA 125
>gi|399057126|ref|ZP_10743793.1| PAS domain S-box [Novosphingobium sp. AP12]
gi|398042358|gb|EJL35389.1| PAS domain S-box [Novosphingobium sp. AP12]
Length = 873
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 40/67 (59%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ETD + +I DAV ++ + N++KDG+ FWN L + P+ D GK F
Sbjct: 84 RFLQGAETDPQTIRRIHDAVERVEAIEIDIRNHRKDGSAFWNRLLMAPVYDAYGKHAYFF 143
Query: 78 GMQVEVS 84
QV+V+
Sbjct: 144 ASQVDVT 150
>gi|347540960|ref|YP_004848386.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS sensor(s)
[Pseudogulbenkiania sp. NH8B]
gi|345644139|dbj|BAK77972.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS sensor(s)
[Pseudogulbenkiania sp. NH8B]
Length = 1072
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +T + E+ IR A+ N L NY+KDG+ FWN L V P++D G+ +I
Sbjct: 545 RFLQGRDTAQPELTAIRRALENRHEGKALLRNYRKDGSMFWNELRVAPVRDSQGEVSHYI 604
Query: 78 GMQ---VEVSKYTEGVNDKA 94
G+ E +Y E + +A
Sbjct: 605 GVLNDVTEAKRYQEELERQA 624
>gi|448566261|ref|ZP_21636806.1| HTR-like protein [Haloferax prahovense DSM 18310]
gi|445714206|gb|ELZ65972.1| HTR-like protein [Haloferax prahovense DSM 18310]
Length = 712
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ETD+ V ++R AV + LLNY+KDGT FWN + + PI D G F+
Sbjct: 314 RFLQGEETDEAAVAELRAAVDEREPVTTELLNYRKDGTEFWNRVRIAPIF-DGGSVDLFV 372
Query: 78 GMQVEVS 84
G Q +++
Sbjct: 373 GFQDDIT 379
>gi|315127027|ref|YP_004069030.1| sensory box protein [Pseudoalteromonas sp. SM9913]
gi|315015541|gb|ADT68879.1| sensory box protein [Pseudoalteromonas sp. SM9913]
Length = 534
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 51/83 (61%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78
FLQG +TDK V++I ++N + + +LN+ K+G P+W +L+V P DD+G+ F+G
Sbjct: 259 FLQGEQTDKETVKRISKNLKNKQPFYEEILNFDKNGVPYWIVLSVNPTFDDNGQHTGFVG 318
Query: 79 MQVEVSKYTEGVNDKALRPNGLS 101
+ ++ + V ++ + + +S
Sbjct: 319 VSSDIREIKRQVLEQINQKDAIS 341
>gi|37523980|ref|NP_927357.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
PCC 7421]
gi|35214986|dbj|BAC92352.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
PCC 7421]
Length = 708
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 19 FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78
LQGP+TD V +R+ ++ G+ Y +LNY K+G +W + V P++D +GK FI
Sbjct: 232 LLQGPQTDPATVMYMRERLQRGEGYTVEILNYGKNGDQYWLAIEVQPVRDGTGKLTHFIA 291
Query: 79 MQVEVSKYTE-GVNDKA-LRPNGLSKSLIRYDARQKEKALGSITEVIQT 125
+Q V++ G +A L ++ L + R K++ L +++ ++T
Sbjct: 292 VQRNVTEQRRAGQEHQALLEREQRARELAEQNNRLKDEFLATLSHELRT 340
>gi|402771419|ref|YP_006590956.1| AraC family transcriptional regulator [Methylocystis sp. SC2]
gi|401773439|emb|CCJ06305.1| Transcriptional regulator with PAS/PAC sensors, AraC family
[Methylocystis sp. SC2]
Length = 488
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + D+ ++R+A+RN + L NY+KDG F N L +TP+ D G+ + F+
Sbjct: 401 RFLQGEDRDQEGRLRLREALRNREQIEVTLRNYRKDGALFHNKLNITPLFDADGRLLYFL 460
Query: 78 GMQVEVSKYTEG 89
G+Q +VS + +
Sbjct: 461 GVQYDVSAHVQA 472
>gi|378952769|ref|YP_005210257.1| pas pac sensor protein [Pseudomonas fluorescens F113]
gi|359762783|gb|AEV64862.1| pas pac sensor protein [Pseudomonas fluorescens F113]
Length = 157
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 44/67 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQ + D+ +E IR A++ G + L NY+KDGTPFWN L+++ +K+ + F+
Sbjct: 54 RFLQSGDRDQASLELIRQALKEGGACREVLRNYRKDGTPFWNELSLSTVKNQADGHTYFV 113
Query: 78 GMQVEVS 84
G+Q +V+
Sbjct: 114 GVQKDVT 120
>gi|443477887|ref|ZP_21067698.1| multi-sensor signal transduction histidine kinase [Pseudanabaena
biceps PCC 7429]
gi|443016903|gb|ELS31469.1| multi-sensor signal transduction histidine kinase [Pseudanabaena
biceps PCC 7429]
Length = 945
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 43/68 (63%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + + + + A++ + LLNY+K+GTPFWN L + P+ +D G+ +I
Sbjct: 305 RFLQGGDRQQIGILDLHQAIQEQRECHAVLLNYRKNGTPFWNDLYIAPVFNDRGELTNYI 364
Query: 78 GMQVEVSK 85
G+Q ++++
Sbjct: 365 GIQTDITE 372
>gi|448460377|ref|ZP_21597202.1| histidine kinase [Halorubrum lipolyticum DSM 21995]
gi|445807118|gb|EMA57204.1| histidine kinase [Halorubrum lipolyticum DSM 21995]
Length = 494
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 41/68 (60%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ET+ IR+A+ + + +LNY+ + FWN LTV PI+ + G I+++
Sbjct: 205 RFLQGAETNTETTAAIREAIDDERPVSVDVLNYRANDQKFWNRLTVAPIRGEDGSVIRYV 264
Query: 78 GMQVEVSK 85
G Q +++
Sbjct: 265 GFQTNITE 272
>gi|296086433|emb|CBI32022.3| unnamed protein product [Vitis vinifera]
Length = 345
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
MS + +E+IG R QGP T + + +I++A++ ++ LLNY+KDGTP W L
Sbjct: 1 MSGYSKEEVIG---KNGRAFQGPGTSRRSITEIQEAIQEERTIQTILLNYRKDGTPIWML 57
Query: 61 LTVTPI-KDDSGKTIKFIGMQVEVSK 85
++P+ + G+ I F+ +QV +S+
Sbjct: 58 FHMSPVFSKEDGRVIHFVAVQVPMSR 83
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 52/76 (68%), Gaps = 5/76 (6%)
Query: 8 ELIGC-CLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI 66
E++GC C+ FL G +TD + + +++++++ ++ R+LNY+KD + FWNLL ++P+
Sbjct: 234 EVLGCQCM----FLSGVDTDPSTLLQVKESIQTEQACTVRILNYRKDRSSFWNLLHISPV 289
Query: 67 KDDSGKTIKFIGMQVE 82
++ SGK + +Q+E
Sbjct: 290 RNASGKIAYSVWVQME 305
>gi|448410719|ref|ZP_21575424.1| PAS fold domain-containing protein [Halosimplex carlsbadense 2-9-1]
gi|445671755|gb|ELZ24342.1| PAS fold domain-containing protein [Halosimplex carlsbadense 2-9-1]
Length = 185
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 40/79 (50%)
Query: 5 TGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVT 64
TG L R LQGP TD V+ +R+A+RN L NY+ DGTPF N +T+
Sbjct: 104 TGHSLAALWGENLRRLQGPGTDGAAVDTLRNALRNWNGVTVELRNYRADGTPFTNRVTLV 163
Query: 65 PIKDDSGKTIKFIGMQVEV 83
P D G + G+Q V
Sbjct: 164 PSPGDDGTVRHWFGLQAAV 182
>gi|224826409|ref|ZP_03699511.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Pseudogulbenkiania ferrooxidans 2002]
gi|224601510|gb|EEG07691.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Pseudogulbenkiania ferrooxidans 2002]
Length = 1072
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +T + E+ IR A+ N L NY+KDG+ FWN L V P++D G+ +I
Sbjct: 545 RFLQGRDTAQPELTAIRRALENRHEGKALLRNYRKDGSMFWNELRVAPVRDSQGEVSHYI 604
Query: 78 GMQ---VEVSKYTEGVNDKA 94
G+ E +Y E + +A
Sbjct: 605 GVLNDVTEAKRYQEELERQA 624
>gi|448667509|ref|ZP_21686009.1| HTR-like protein [Haloarcula amylolytica JCM 13557]
gi|445770077|gb|EMA21145.1| HTR-like protein [Haloarcula amylolytica JCM 13557]
Length = 727
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIK-DDSGKTIKF 76
R LQG TD V +RDA+ + L NY+KDGT FWN + + P++ DD G + +
Sbjct: 320 RMLQGENTDPESVATMRDAIDAEERVTVELRNYRKDGTEFWNRVRIAPVRDDDDGTVVNY 379
Query: 77 IGMQVEVSK 85
+G Q ++++
Sbjct: 380 VGFQQDITE 388
>gi|374621544|ref|ZP_09694075.1| PAS sensor protein [Ectothiorhodospira sp. PHS-1]
gi|373940676|gb|EHQ51221.1| PAS sensor protein [Ectothiorhodospira sp. PHS-1]
Length = 150
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + ++ +E+IR A+ + L NY+KDGT F N L++ P+ D SGK I F+
Sbjct: 64 RFLQGEDREQPAIEEIRKALAERREVEVTLRNYRKDGTLFHNRLSIRPLFDASGKLIYFL 123
Query: 78 GMQVEVS 84
G+Q +V+
Sbjct: 124 GVQYDVT 130
>gi|448407766|ref|ZP_21573961.1| light and redox sensing histidine kinase [Halosimplex carlsbadense
2-9-1]
gi|445675016|gb|ELZ27551.1| light and redox sensing histidine kinase [Halosimplex carlsbadense
2-9-1]
Length = 972
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 39/67 (58%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG +T V +R A+ G+ L NY+KDGT FWN +++ P++ G ++
Sbjct: 304 RFLQGADTAGEPVAAMRSAIDAGEPVTVELRNYRKDGTEFWNRVSIAPVRSAEGTITNYV 363
Query: 78 GMQVEVS 84
G Q +V+
Sbjct: 364 GFQRDVT 370
>gi|323489144|ref|ZP_08094376.1| blue light GTP-binding receptor [Planococcus donghaensis MPA1U2]
gi|323397031|gb|EGA89845.1| blue light GTP-binding receptor [Planococcus donghaensis MPA1U2]
Length = 282
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 7/85 (8%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ + +E+IG C RFLQG T K ++EK+R A+ + + NY+KDG+PFWN
Sbjct: 62 MTGYSQEEIIGRNC----RFLQGAGTAKEDIEKMRTAIAAEEKVIVTIQNYRKDGSPFWN 117
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVS 84
L + P++ + + FIG Q +++
Sbjct: 118 RLVIDPVRIEG--ELYFIGTQTDIT 140
>gi|344343465|ref|ZP_08774333.1| PAS sensor protein [Marichromatium purpuratum 984]
gi|343804888|gb|EGV22786.1| PAS sensor protein [Marichromatium purpuratum 984]
Length = 152
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + D+ V +IR+A+ + L NY+KDG+ F+N T+ P+ D G+ I ++
Sbjct: 63 RFLQGEDHDQEGVAQIREAMAGNQPVTVTLRNYRKDGSRFYNRFTIRPLFDREGQLIYYL 122
Query: 78 GMQVEVSKYTEG 89
G+Q +V+ E
Sbjct: 123 GIQHDVTNQVEA 134
>gi|395490894|ref|ZP_10422473.1| multi-sensor hybrid histidine kinase [Sphingomonas sp. PAMC 26617]
Length = 557
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 11/114 (9%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQGPET+ VE + A+ + + NY KDG PFWN L + P+ D G F
Sbjct: 73 RFLQGPETEPATVELVCAAIAAREPIEIDIRNYTKDGHPFWNRLLIAPVFDTDGSIAYFF 132
Query: 78 GMQVEVSKYTEGVNDKA---------LRPNGLSKSLIRYDARQKEK--ALGSIT 120
Q +V+ + + D+ LR ++ I RQ +K A+G +T
Sbjct: 133 ASQFDVTADYDNLADRVRELTEANERLRVEAAARKQIEEALRQSQKMEAVGQLT 186
>gi|384266573|ref|YP_005422280.1| Blue-light photoreceptor [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387899625|ref|YP_006329921.1| sensory transduction histidine kinase [Bacillus amyloliquefaciens
Y2]
gi|380499926|emb|CCG50964.1| Blue-light photoreceptor [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387173735|gb|AFJ63196.1| sensory transduction histidine kinase [Bacillus amyloliquefaciens
Y2]
Length = 276
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 7/89 (7%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ + +E++G C RFLQ ETD+ +V KIR ++ + RL N KKDGTPFWN
Sbjct: 64 MTGYSSEEILGKNC----RFLQSKETDRQQVAKIRKSLNQKEKITVRLKNVKKDGTPFWN 119
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTE 88
L + P+ + + F+G Q ++++ E
Sbjct: 120 ELNIDPLYVED--KLYFVGFQKDITEQKE 146
>gi|448622505|ref|ZP_21669199.1| bacterio-opsin activator [Haloferax denitrificans ATCC 35960]
gi|445754587|gb|EMA05992.1| bacterio-opsin activator [Haloferax denitrificans ATCC 35960]
Length = 659
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
R+LQGP TD V ++R A+ +S LLNY+ +G FWN + V P+ G+ ++
Sbjct: 182 RYLQGPNTDPERVAELRRAIEAEESASVELLNYRANGETFWNRVDVAPLSGPDGEVTHYV 241
Query: 78 GMQVEVSK 85
G Q ++++
Sbjct: 242 GFQTDITE 249
>gi|241764147|ref|ZP_04762182.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax delafieldii
2AN]
gi|241366484|gb|EER60984.1| diguanylate cyclase with PAS/PAC sensor [Acidovorax delafieldii
2AN]
Length = 418
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
M+ T +EL G L R LQGP+TD+ +E + + + + G NY+KDG+ +
Sbjct: 40 MTGYTMEELQGRTL---RMLQGPDTDRAVIEHLHQCLNEARYFEGTATNYRKDGSSYLVH 96
Query: 61 LTVTPIKDDSGKTIKFIGMQVEVSKYTE 88
++P++ D G FI +Q +VS Y +
Sbjct: 97 WNISPVRGDDGALTHFISVQQDVSAYIQ 124
>gi|404252612|ref|ZP_10956580.1| sensor histidine kinase [Sphingomonas sp. PAMC 26621]
Length = 207
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFL GP T+ E+IR VR + +LNYK+ G PF N + V PI D+ + + F+
Sbjct: 61 RFLSGPATEPWLTEEIRRGVREHRPVLVEILNYKRSGEPFRNAVLVAPIYDEKDELLYFL 120
Query: 78 GMQVEV 83
G Q+E+
Sbjct: 121 GSQLEI 126
>gi|399911834|ref|ZP_10780148.1| response regulator receiver modulated PAS/PAC sensor-containing
diguanylate cyclase/phosphodiesterase [Halomonas sp.
KM-1]
Length = 830
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 44/71 (61%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG + D ++IR + + + L NY+KDG+PFWN L ++P++DD+ + +I
Sbjct: 183 RFLQGDQPDPALGQRIRRELDAQRDFHMTLCNYRKDGSPFWNDLHISPVRDDTQQISHYI 242
Query: 78 GMQVEVSKYTE 88
G+ ++S E
Sbjct: 243 GILNDISAERE 253
>gi|383642354|ref|ZP_09954760.1| PAS/PAC sensor hybrid histidine kinase [Sphingomonas elodea ATCC
31461]
Length = 568
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/103 (33%), Positives = 60/103 (58%), Gaps = 14/103 (13%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQG ETD++ V ++R AV ++ ++NY++DG+PFWN + + P+ D G+ I F
Sbjct: 100 RFLQGAETDRDAVAEMRAAVEAEEALAIEVINYRRDGSPFWNAVFIAPVLDPDGELIYFF 159
Query: 78 GMQVEVSKYTEGVNDKALRPNGLSKSLIRYDARQKEKALGSIT 120
Q++V++ + +++A R QK +A+G +T
Sbjct: 160 ASQLDVTRRRQ--SEQAFR------------QAQKMEAIGQLT 188
>gi|398948265|ref|ZP_10672679.1| PAS domain S-box [Pseudomonas sp. GM33]
gi|398160919|gb|EJM49170.1| PAS domain S-box [Pseudomonas sp. GM33]
Length = 158
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLL-NYKKDGTPFWNLLTVTPIKDDSGKTIKF 76
RFLQ + D+N + IRDA+ N + C +L NY+KDGTPFWN L+++ +K+ + F
Sbjct: 55 RFLQSGDRDQNALPLIRDAL-NREGSCREILRNYRKDGTPFWNELSLSTVKNPADGQTYF 113
Query: 77 IGMQVEVS 84
+G+Q +V+
Sbjct: 114 VGVQKDVT 121
>gi|259156610|gb|ACV96553.1| pas/pac/ggdef-domain containing protein [Vibrio fluvialis Ind1]
Length = 423
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 8 ELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIK 67
EL G L + LQGP TD+ + ++R + +G+ + G NY+KDG+P+ ++P++
Sbjct: 50 ELYGQSL---KMLQGPATDQEVINRLRHCLTSGEYFEGMTTNYRKDGSPYLVRWNISPVR 106
Query: 68 DDSGKTIKFIGMQVEVSKYT 87
D+ G F+ +Q +++ Y
Sbjct: 107 DEEGDITHFVSVQQDMTAYA 126
>gi|375110486|ref|ZP_09756708.1| response regulator receiver modulated PAS/PAC sensor-containing
diguanylate cyclase/phosphodiesterase [Alishewanella
jeotgali KCTC 22429]
gi|374569430|gb|EHR40591.1| response regulator receiver modulated PAS/PAC sensor-containing
diguanylate cyclase/phosphodiesterase [Alishewanella
jeotgali KCTC 22429]
Length = 1590
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 43/67 (64%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
+FLQG E D+ +++IR+A+ + L NY+KDG+ FWN L + P+ D+ G +I
Sbjct: 945 KFLQGTERDELAIQQIRNAIAERQECSVVLKNYRKDGSIFWNNLFLAPVPDEQGVITHYI 1004
Query: 78 GMQVEVS 84
G+Q +++
Sbjct: 1005 GIQTDIT 1011
>gi|429506317|ref|YP_007187501.1| sensory transduction histidine kinase [Bacillus amyloliquefaciens
subsp. plantarum AS43.3]
gi|429487907|gb|AFZ91831.1| sensory transduction histidine kinase [Bacillus amyloliquefaciens
subsp. plantarum AS43.3]
Length = 261
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 7/89 (7%)
Query: 1 MSDPTGKELIG-CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWN 59
M+ + +E++G C RFLQ ETD+ +V KIR ++ + RL N KKDGTPFWN
Sbjct: 49 MTGYSSEEILGKNC----RFLQSKETDRQQVAKIRKSLNQKEKITVRLKNVKKDGTPFWN 104
Query: 60 LLTVTPIKDDSGKTIKFIGMQVEVSKYTE 88
L + P+ + + F+G Q ++++ E
Sbjct: 105 ELNIDPLYVEDK--LYFVGFQKDITEQKE 131
>gi|326525301|dbj|BAK07920.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 197
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 17 SRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDS-GKTIK 75
+R QG TD+ V +R+AVR +++ +LNY++DG P W LL + P+ + G+ +
Sbjct: 67 ARLFQGAATDRAAVSGLREAVRAQRAHQVAILNYRRDGAPHWVLLHLAPVFHAADGRVLH 126
Query: 76 FIGMQVEVS 84
F+ +QV ++
Sbjct: 127 FLAVQVPIA 135
>gi|375363433|ref|YP_005131472.1| Blue-light photoreceptor Phototropin-like protein [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|421730573|ref|ZP_16169699.1| Blue-light photoreceptor Phototropin-like protein [Bacillus
amyloliquefaciens subsp. plantarum M27]
gi|451345830|ref|YP_007444461.1| Blue-light photoreceptor Phototropin-like protein [Bacillus
amyloliquefaciens IT-45]
gi|371569427|emb|CCF06277.1| Blue-light photoreceptor Phototropin-like protein [Bacillus
amyloliquefaciens subsp. plantarum CAU B946]
gi|407074727|gb|EKE47714.1| Blue-light photoreceptor Phototropin-like protein [Bacillus
amyloliquefaciens subsp. plantarum M27]
gi|449849588|gb|AGF26580.1| Blue-light photoreceptor Phototropin-like protein [Bacillus
amyloliquefaciens IT-45]
Length = 261
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 18 RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
RFLQ ETD+ +V KIR ++ + RL N KKDGTPFWN L + P+ + + F+
Sbjct: 63 RFLQSKETDRQQVAKIRKSLNQKEKITVRLKNVKKDGTPFWNELNIDPLYVEDK--LYFV 120
Query: 78 GMQVEVSKYTE 88
G Q ++++ E
Sbjct: 121 GFQKDITEQKE 131
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,423,637,485
Number of Sequences: 23463169
Number of extensions: 92310893
Number of successful extensions: 244030
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3539
Number of HSP's successfully gapped in prelim test: 364
Number of HSP's that attempted gapping in prelim test: 239647
Number of HSP's gapped (non-prelim): 4688
length of query: 162
length of database: 8,064,228,071
effective HSP length: 123
effective length of query: 39
effective length of database: 9,473,225,580
effective search space: 369455797620
effective search space used: 369455797620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 71 (32.0 bits)