BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043549
         (162 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2Z6D|A Chain A, Crystal Structure Of Lov1 Domain Of Phototropin2 From
           Arabidopsis Thaliana
 pdb|2Z6D|B Chain B, Crystal Structure Of Lov1 Domain Of Phototropin2 From
           Arabidopsis Thaliana
          Length = 130

 Score =  154 bits (388), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 75/95 (78%), Positives = 81/95 (85%), Gaps = 7/95 (7%)

Query: 1   MSDPTGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFW 58
           M+  + KE++G  C     RFLQGP+TDKNEV KIRD V+NGKSYCGRLLNYKKDGTPFW
Sbjct: 41  MTGYSSKEIVGRNC-----RFLQGPDTDKNEVAKIRDCVKNGKSYCGRLLNYKKDGTPFW 95

Query: 59  NLLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDK 93
           NLLTVTPIKDD G TIKFIGMQVEVSKYTEGVNDK
Sbjct: 96  NLLTVTPIKDDQGNTIKFIGMQVEVSKYTEGVNDK 130


>pdb|2Z6C|A Chain A, Crystal Structure Of Lov1 Domain Of Phototropin1 From
           Arabidopsis Thaliana
 pdb|2Z6C|B Chain B, Crystal Structure Of Lov1 Domain Of Phototropin1 From
           Arabidopsis Thaliana
          Length = 129

 Score =  118 bits (296), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/92 (61%), Positives = 70/92 (76%), Gaps = 7/92 (7%)

Query: 1   MSDPTGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFW 58
           M+  T KE++G  C     RFLQG  TD +E+ KIR+ +  G +YCGR+LNYKKDGT FW
Sbjct: 42  MTGYTSKEVVGRNC-----RFLQGSGTDADELAKIRETLAAGNNYCGRILNYKKDGTSFW 96

Query: 59  NLLTVTPIKDDSGKTIKFIGMQVEVSKYTEGV 90
           NLLT+ PIKD+SGK +KFIGMQVEVSK+TEG 
Sbjct: 97  NLLTIAPIKDESGKVLKFIGMQVEVSKHTEGA 128


>pdb|1N9L|A Chain A, Crystal Structure Of The Phot-lov1 Domain From
           Chlamydomonas Reinhardtii In The Dark State.
 pdb|1N9N|A Chain A, Crystal Structure Of The Phot-Lov1 Domain From
           Chlamydomonas Reinhardtii In Illuminated State. Data Set
           Of A Single Crystal.
 pdb|1N9O|A Chain A, Crystal Structure Of The Phot-Lov1 Domain From
           Chlamydomonas Reinhardtii In Illuminated State.
           Composite Data Set
          Length = 109

 Score = 94.7 bits (234), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/67 (64%), Positives = 54/67 (80%)

Query: 18  RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
           RFLQG  TD  EV+KIRDA++ G++   RLLNY+KDGTPFWNLLTVTPIK   G+  KF+
Sbjct: 42  RFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPFWNLLTVTPIKTPDGRVSKFV 101

Query: 78  GMQVEVS 84
           G+QV+V+
Sbjct: 102 GVQVDVT 108


>pdb|4EES|A Chain A, Crystal Structure Of Ilov
 pdb|4EET|B Chain B, Crystal Structure Of Ilov
 pdb|4EET|D Chain D, Crystal Structure Of Ilov
          Length = 115

 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 50/70 (71%)

Query: 17  SRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKF 76
           +RFLQGPETD+  V+KIRDA+R+ +    +L+NY K G  FWNLL + P++D  G+   F
Sbjct: 45  ARFLQGPETDQATVQKIRDAIRDQRETTVQLINYTKSGKKFWNLLHLQPVRDQKGELQYF 104

Query: 77  IGMQVEVSKY 86
           IG+Q++ S +
Sbjct: 105 IGVQLDGSDH 114


>pdb|4EER|A Chain A, Crystal Structure Of Lov2 Domain Of Arabidopsis Thaliana
           Phototropin 2 C426a Mutant
          Length = 115

 Score = 77.0 bits (188), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 49/71 (69%)

Query: 17  SRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKF 76
           +RFLQGPETD+  V+KIRDA+R+ +    +L+NY K G  FWNL  + P++D  G+   F
Sbjct: 45  ARFLQGPETDQATVQKIRDAIRDQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYF 104

Query: 77  IGMQVEVSKYT 87
           IG+Q++ S + 
Sbjct: 105 IGVQLDGSDHV 115


>pdb|4EEP|A Chain A, Crystal Structure Of Lov2 Domain Of Arabidopsis Thaliana
           Phototropin 2
          Length = 115

 Score = 76.3 bits (186), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 48/70 (68%)

Query: 18  RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
           RFLQGPETD+  V+KIRDA+R+ +    +L+NY K G  FWNL  + P++D  G+   FI
Sbjct: 46  RFLQGPETDQATVQKIRDAIRDQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFI 105

Query: 78  GMQVEVSKYT 87
           G+Q++ S + 
Sbjct: 106 GVQLDGSDHV 115


>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
           C450a Mutant
          Length = 332

 Score = 75.9 bits (185), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 49/80 (61%), Gaps = 3/80 (3%)

Query: 17  SRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKF 76
           +RFLQGPETD+  V KIRDA+ N      +L+NY K G  FWNL  + P++D  G    F
Sbjct: 59  ARFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYF 118

Query: 77  IGMQVEVSKYTEGVNDKALR 96
           IG+Q++    TE V D A R
Sbjct: 119 IGVQLDG---TEHVRDAAER 135


>pdb|2V1A|A Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are
           Involved In Light-Induced Signal Transduction (Room
           Temperature (293k) Dark Structure Of Lov2 (404-546))
 pdb|2V1B|A Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are
           Involved In Light-Induced Signal Transduction (Room
           Temperature (293k) Light Structure Of Lov2 (404-546))
          Length = 144

 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 48/79 (60%), Gaps = 3/79 (3%)

Query: 18  RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
           RFLQGPETD+  V KIRDA+ N      +L+NY K G  FWNL  + P++D  G    FI
Sbjct: 49  RFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFI 108

Query: 78  GMQVEVSKYTEGVNDKALR 96
           G+Q++    TE V D A R
Sbjct: 109 GVQLD---GTEHVRDAAER 124


>pdb|2V0U|A Chain A, N- And C-terminal Helices Of Oat Lov2 (404-546) Are
           Involved In Light-induced Signal Transduction (cryo Dark
           Structure Of Lov2 (404-546))
 pdb|2V0W|A Chain A, N- And C-Terminal Helices Of Oat Lov2 (404-546) Are
           Involved In Light-Induced Signal Transduction (Cryo-
           Trapped Light Structure Of Lov2 (404-546))
          Length = 146

 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 48/79 (60%), Gaps = 3/79 (3%)

Query: 18  RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
           RFLQGPETD+  V KIRDA+ N      +L+NY K G  FWNL  + P++D  G    FI
Sbjct: 51  RFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFI 110

Query: 78  GMQVEVSKYTEGVNDKALR 96
           G+Q++    TE V D A R
Sbjct: 111 GVQLD---GTEHVRDAAER 126


>pdb|3ULF|A Chain A, The Light State Structure Of The Blue-light Photoreceptor
           Aureochrome1 Lov
 pdb|3ULF|B Chain B, The Light State Structure Of The Blue-light Photoreceptor
           Aureochrome1 Lov
 pdb|3ULF|C Chain C, The Light State Structure Of The Blue-light Photoreceptor
           Aureochrome1 Lov
 pdb|3ULF|D Chain D, The Light State Structure Of The Blue-light Photoreceptor
           Aureochrome1 Lov
 pdb|3ULF|E Chain E, The Light State Structure Of The Blue-light Photoreceptor
           Aureochrome1 Lov
 pdb|3ULF|F Chain F, The Light State Structure Of The Blue-light Photoreceptor
           Aureochrome1 Lov
          Length = 170

 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 46/68 (67%)

Query: 18  RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
           RFLQGPETD   V+KIR+A+  G      LLNY++DGT FWNL  V  ++D  G  + ++
Sbjct: 88  RFLQGPETDPRAVDKIRNAITKGVDTSVCLLNYRQDGTTFWNLFFVAGLRDSKGNIVNYV 147

Query: 78  GMQVEVSK 85
           G+Q +VS+
Sbjct: 148 GVQSKVSE 155


>pdb|3UE6|A Chain A, The Dark Structure Of The Blue-light Photoreceptor
           Aureochrome1 Lov
 pdb|3UE6|B Chain B, The Dark Structure Of The Blue-light Photoreceptor
           Aureochrome1 Lov
 pdb|3UE6|C Chain C, The Dark Structure Of The Blue-light Photoreceptor
           Aureochrome1 Lov
 pdb|3UE6|D Chain D, The Dark Structure Of The Blue-light Photoreceptor
           Aureochrome1 Lov
 pdb|3UE6|E Chain E, The Dark Structure Of The Blue-light Photoreceptor
           Aureochrome1 Lov
 pdb|3UE6|F Chain F, The Dark Structure Of The Blue-light Photoreceptor
           Aureochrome1 Lov
          Length = 166

 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 46/68 (67%)

Query: 18  RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
           RFLQGPETD   V+KIR+A+  G      LLNY++DGT FWNL  V  ++D  G  + ++
Sbjct: 84  RFLQGPETDPRAVDKIRNAITKGVDTSVCLLNYRQDGTTFWNLFFVAGLRDSKGNIVNYV 143

Query: 78  GMQVEVSK 85
           G+Q +VS+
Sbjct: 144 GVQSKVSE 151


>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
           C450m Mutant
          Length = 332

 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 48/79 (60%), Gaps = 3/79 (3%)

Query: 18  RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
           RFLQGPETD+  V KIRDA+ N      +L+NY K G  FWNL  + P++D  G    FI
Sbjct: 60  RFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFI 119

Query: 78  GMQVEVSKYTEGVNDKALR 96
           G+Q++    TE V D A R
Sbjct: 120 GVQLDG---TEHVRDAAER 135


>pdb|4EEU|A Chain A, Crystal Structure Of Philov2.1
          Length = 118

 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 46/65 (70%)

Query: 17  SRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKF 76
           +RFLQGPETD+  V+KIRDA+R+ +    +L+NY K G  FWNLL + P++D  G    F
Sbjct: 48  ARFLQGPETDQATVQKIRDAIRDQRETTVQLINYTKSGKKFWNLLHLQPVRDRKGGLQYF 107

Query: 77  IGMQV 81
           IG+Q+
Sbjct: 108 IGVQL 112


>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
           Wildtype
          Length = 332

 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 48/79 (60%), Gaps = 3/79 (3%)

Query: 18  RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
           RFLQGPETD+  V KIRDA+ N      +L+NY K G  FWNL  + P++D  G    FI
Sbjct: 60  RFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFI 119

Query: 78  GMQVEVSKYTEGVNDKALR 96
           G+Q++    TE V D A R
Sbjct: 120 GVQLDG---TEHVRDAAER 135


>pdb|3P7N|A Chain A, Crystal Structure Of Light Activated Transcription Factor
           El222 From Erythrobacter Litoralis
 pdb|3P7N|B Chain B, Crystal Structure Of Light Activated Transcription Factor
           El222 From Erythrobacter Litoralis
          Length = 258

 Score = 66.2 bits (160), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 45/83 (54%)

Query: 1   MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
            +D TG     C     RFL G  T+    +KIR  VR  K     +LNYKKDGTPF N 
Sbjct: 95  FTDLTGYSEEECVGRNCRFLAGSGTEPWLTDKIRQGVREHKPVLVEILNYKKDGTPFRNA 154

Query: 61  LTVTPIKDDSGKTIKFIGMQVEV 83
           + V PI DD  + + F+G QVEV
Sbjct: 155 VLVAPIYDDDDELLYFLGSQVEV 177


>pdb|3SW1|A Chain A, Structure Of A Full-Length Bacterial Lov Protein
 pdb|3SW1|B Chain B, Structure Of A Full-Length Bacterial Lov Protein
          Length = 162

 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 45/71 (63%)

Query: 18  RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
           RFLQG + D+    +IR A+  G+     L NY+KDG+ FWN L++TP+K D  +   FI
Sbjct: 74  RFLQGDDRDQLGRARIRKAMAEGRPCREVLRNYRKDGSAFWNELSITPVKSDFDQRTYFI 133

Query: 78  GMQVEVSKYTE 88
           G+Q +VS+  E
Sbjct: 134 GIQKDVSRQVE 144


>pdb|1G28|A Chain A, Structure Of A Flavin-Binding Domain, Lov2, From The
           Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
 pdb|1G28|B Chain B, Structure Of A Flavin-Binding Domain, Lov2, From The
           Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
 pdb|1G28|C Chain C, Structure Of A Flavin-Binding Domain, Lov2, From The
           Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
 pdb|1G28|D Chain D, Structure Of A Flavin-Binding Domain, Lov2, From The
           Chimeric PhytochromePHOTOTROPIN PHOTORECEPTOR PHY3
 pdb|1JNU|A Chain A, Photoexcited Structure Of The Plant Photoreceptor Domain,
           Phy3 Lov2
 pdb|1JNU|B Chain B, Photoexcited Structure Of The Plant Photoreceptor Domain,
           Phy3 Lov2
 pdb|1JNU|C Chain C, Photoexcited Structure Of The Plant Photoreceptor Domain,
           Phy3 Lov2
 pdb|1JNU|D Chain D, Photoexcited Structure Of The Plant Photoreceptor Domain,
           Phy3 Lov2
          Length = 104

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 3/83 (3%)

Query: 1   MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNL 60
           +++ T +E++G    C RFLQG  TD+  V+ IRDAV+  +    ++LNY K G  FWNL
Sbjct: 25  LTEYTREEVLGNN--C-RFLQGRGTDRKAVQLIRDAVKEQRDVTVQVLNYTKGGRAFWNL 81

Query: 61  LTVTPIKDDSGKTIKFIGMQVEV 83
             +  ++D++G    FIG+Q E+
Sbjct: 82  FHLQVMRDENGDVQYFIGVQQEM 104


>pdb|2PR5|A Chain A, Structural Basis For Light-dependent Signaling In The
           Dimeric Lov Photosensor Ytva (dark Structure)
 pdb|2PR5|B Chain B, Structural Basis For Light-dependent Signaling In The
           Dimeric Lov Photosensor Ytva (dark Structure)
 pdb|2PR6|A Chain A, Structural Basis For Light-dependent Signaling In The
           Dimeric Lov Photosensor Ytva (light Structure)
 pdb|2PR6|B Chain B, Structural Basis For Light-dependent Signaling In The
           Dimeric Lov Photosensor Ytva (light Structure)
          Length = 132

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 47/71 (66%), Gaps = 2/71 (2%)

Query: 18  RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
           RFLQG  TD  EV+ IR A++N +    ++ NYKKDGT FWN L + P++ +  KT  F+
Sbjct: 48  RFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPMEIED-KTY-FV 105

Query: 78  GMQVEVSKYTE 88
           G+Q +++K  E
Sbjct: 106 GIQNDITKQKE 116


>pdb|3T50|A Chain A, X-Ray Structure Of The Lov Domain From The Lov-Hk Sensory
           Protein From Brucella Abortus (Dark State).
 pdb|3T50|B Chain B, X-Ray Structure Of The Lov Domain From The Lov-Hk Sensory
           Protein From Brucella Abortus (Dark State)
          Length = 128

 Score = 56.2 bits (134), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 39/67 (58%)

Query: 18  RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
           RFLQG  TD   V  I+ A+   K     ++NYKK G  FWN L ++P+ + +G+   F+
Sbjct: 46  RFLQGHGTDPAHVRAIKSAIAAEKPIDIDIINYKKSGEAFWNRLHISPVHNANGRLQHFV 105

Query: 78  GMQVEVS 84
             Q++V+
Sbjct: 106 SSQLDVT 112


>pdb|3RH8|B Chain B, Crystal Structure Of The Light-State Dimer Of Fungal
           Blue-Light Photoreceptor Vivid
 pdb|3RH8|D Chain D, Crystal Structure Of The Light-State Dimer Of Fungal
           Blue-Light Photoreceptor Vivid
          Length = 148

 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 11/76 (14%)

Query: 18  RFLQGPE-----------TDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI 66
           RFLQ P+            D N +  IR A+         ++N+KK+G  F N LT+ P+
Sbjct: 73  RFLQSPDGMVKPKSTRKYVDSNTINTIRKAIDRNAEVQVEVVNFKKNGQRFVNFLTIIPV 132

Query: 67  KDDSGKTIKFIGMQVE 82
           +D++G+    +G Q E
Sbjct: 133 RDETGEYRYSMGFQCE 148


>pdb|3HJI|A Chain A, 1.8 Angstrom Crystal Structure Of The I74v:i85v Variant Of
           Vivid (Vvd).
 pdb|3HJI|B Chain B, 1.8 Angstrom Crystal Structure Of The I74v:i85v Variant Of
           Vivid (Vvd)
          Length = 154

 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 11/76 (14%)

Query: 18  RFLQGPE-----------TDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI 66
           RFLQ P+            D N +  +R A+         ++N+KK+G  F N LT+ P+
Sbjct: 77  RFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVNFLTMIPV 136

Query: 67  KDDSGKTIKFIGMQVE 82
           +D++G+    +G Q E
Sbjct: 137 RDETGEYRYSMGFQCE 152


>pdb|3IS2|B Chain B, 2.3 Angstrom Crystal Structure Of A Cys71 Sulfenic Acid
           Form Of Vivid
          Length = 154

 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 11/76 (14%)

Query: 18  RFLQGPE-----------TDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI 66
           RFLQ P+            D N +  +R A+         ++N+KK+G  F N LT+ P+
Sbjct: 77  RFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVNFLTMIPV 136

Query: 67  KDDSGKTIKFIGMQVE 82
           +D++G+    +G Q E
Sbjct: 137 RDETGEYRYSMGFQCE 152


>pdb|3HJK|A Chain A, 2.0 Angstrom Structure Of The Ile74val Variant Of Vivid
           (Vvd).
 pdb|3HJK|B Chain B, 2.0 Angstrom Structure Of The Ile74val Variant Of Vivid
           (Vvd)
          Length = 154

 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 11/76 (14%)

Query: 18  RFLQGPE-----------TDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI 66
           RFLQ P+            D N +  +R A+         ++N+KK+G  F N LT+ P+
Sbjct: 77  RFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVNFLTMIPV 136

Query: 67  KDDSGKTIKFIGMQVE 82
           +D++G+    +G Q E
Sbjct: 137 RDETGEYRYSMGFQCE 152


>pdb|2PD7|A Chain A, 2.0 Angstrom Crystal Structure Of The Fungal Blue-Light
           Photoreceptor Vivid
 pdb|2PD7|B Chain B, 2.0 Angstrom Crystal Structure Of The Fungal Blue-Light
           Photoreceptor Vivid
 pdb|2PDR|A Chain A, 1.7 Angstrom Crystal Structure Of The Photo-excited Blue-
           Light Photoreceptor Vivid
 pdb|2PDR|B Chain B, 1.7 Angstrom Crystal Structure Of The Photo-excited Blue-
           Light Photoreceptor Vivid
 pdb|2PDR|C Chain C, 1.7 Angstrom Crystal Structure Of The Photo-excited Blue-
           Light Photoreceptor Vivid
 pdb|2PDR|D Chain D, 1.7 Angstrom Crystal Structure Of The Photo-excited Blue-
           Light Photoreceptor Vivid
 pdb|2PDT|A Chain A, 2.3 Angstrom Structure Of Phosphodiesterase Treated Vivid
 pdb|2PDT|B Chain B, 2.3 Angstrom Structure Of Phosphodiesterase Treated Vivid
 pdb|2PDT|C Chain C, 2.3 Angstrom Structure Of Phosphodiesterase Treated Vivid
 pdb|2PDT|D Chain D, 2.3 Angstrom Structure Of Phosphodiesterase Treated Vivid
          Length = 149

 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 11/76 (14%)

Query: 18  RFLQGPE-----------TDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI 66
           RFLQ P+            D N +  +R A+         ++N+KK+G  F N LT+ P+
Sbjct: 74  RFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVNFLTMIPV 133

Query: 67  KDDSGKTIKFIGMQVE 82
           +D++G+    +G Q E
Sbjct: 134 RDETGEYRYSMGFQCE 149


>pdb|3D72|A Chain A, 1.65 Angstrom Crystal Structure Of The Cys71val Variant In
           The Fungal Photoreceptor Vvd
 pdb|3D72|B Chain B, 1.65 Angstrom Crystal Structure Of The Cys71val Variant In
           The Fungal Photoreceptor Vvd
          Length = 149

 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 11/76 (14%)

Query: 18  RFLQGPE-----------TDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI 66
           RFLQ P+            D N +  +R A+         ++N+KK+G  F N LT+ P+
Sbjct: 74  RFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVNFLTMIPV 133

Query: 67  KDDSGKTIKFIGMQVE 82
           +D++G+    +G Q E
Sbjct: 134 RDETGEYRYSMGFQCE 149


>pdb|3IS2|A Chain A, 2.3 Angstrom Crystal Structure Of A Cys71 Sulfenic Acid
           Form Of Vivid
          Length = 154

 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 11/76 (14%)

Query: 18  RFLQGPE-----------TDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI 66
           RFLQ P+            D N +  +R A+         ++N+KK+G  F N LT+ P+
Sbjct: 77  RFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVNFLTMIPV 136

Query: 67  KDDSGKTIKFIGMQVE 82
           +D++G+    +G Q E
Sbjct: 137 RDETGEYRYSMGFQCE 152


>pdb|2PD8|A Chain A, 1.8 Angstrom Crystal Structure Of The Cys71ser Mutant Of
           Vivid
 pdb|2PD8|B Chain B, 1.8 Angstrom Crystal Structure Of The Cys71ser Mutant Of
           Vivid
          Length = 149

 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 11/76 (14%)

Query: 18  RFLQGPE-----------TDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI 66
           RFLQ P+            D N +  +R A+         ++N+KK+G  F N LT+ P+
Sbjct: 74  RFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVNFLTMIPV 133

Query: 67  KDDSGKTIKFIGMQVE 82
           +D++G+    +G Q E
Sbjct: 134 RDETGEYRYSMGFQCE 149


>pdb|4HJ6|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
 pdb|4HJ6|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
          Length = 178

 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 34/68 (50%)

Query: 18  RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
           RFLQ  + +      IRDA++ G+     L NY+ +  PF NLL + P+         F+
Sbjct: 58  RFLQRGDENAQARADIRDALKLGRELQVVLRNYRANDEPFDNLLFLHPVGGRPDAPDYFL 117

Query: 78  GMQVEVSK 85
           G Q E+ +
Sbjct: 118 GSQFELGR 125


>pdb|4HJ4|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
 pdb|4HJ4|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
 pdb|4HNB|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
 pdb|4HNB|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
          Length = 177

 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 34/68 (50%)

Query: 18  RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
           RFLQ  + +      IRDA++ G+     L NY+ +  PF NLL + P+         F+
Sbjct: 57  RFLQRGDENAQARADIRDALKLGRELQVVLRNYRANDEPFDNLLFLHPVGGRPDAPDYFL 116

Query: 78  GMQVEVSK 85
           G Q E+ +
Sbjct: 117 GSQFELGR 124


>pdb|4HJ3|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
 pdb|4HJ3|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
          Length = 176

 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 34/68 (50%)

Query: 18  RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
           RFLQ  + +      IRDA++ G+     L NY+ +  PF NLL + P+         F+
Sbjct: 56  RFLQRGDENAQARADIRDALKLGRELQVVLRNYRANDEPFDNLLFLHPVGGRPDAPDYFL 115

Query: 78  GMQVEVSK 85
           G Q E+ +
Sbjct: 116 GSQFELGR 123


>pdb|4HIA|A Chain A, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
 pdb|4HIA|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Lov Protein
          Length = 176

 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 34/68 (50%)

Query: 18  RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
           RFLQ  + +      IRDA++ G+     L NY+ +  PF NLL + P+         F+
Sbjct: 56  RFLQRGDENAQARADIRDALKLGRELQVVLRNYRANDEPFDNLLFLHPVGGRPDAPDYFL 115

Query: 78  GMQVEVSK 85
           G Q E+ +
Sbjct: 116 GSQFELGR 123


>pdb|3EWK|A Chain A, Structure Of The Redox Sensor Domain Of Methylococcus
           Capsulatus (Bath) Mmos
          Length = 227

 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 6/68 (8%)

Query: 19  FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKK------DGTPFWNLLTVTPIKDDSGK 72
            L  P  D+  +  +++A++ G+ + GRLLN ++      D   +W  ++ TPI  D   
Sbjct: 158 ILDSPLADQETLAAMQEALQAGQPWSGRLLNRRRTGPAPHDAEDYWAEISTTPIHTDGNG 217

Query: 73  TIKFIGMQ 80
            + ++ +Q
Sbjct: 218 LVGYVQIQ 225



 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 33  IRDAVRN---GKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGMQVEVSKYTEG 89
           IRD  R    G  + G   N +KDGT +W   T+ P+ D++GK  ++I ++ +++   E 
Sbjct: 47  IRDMWRTISRGNIWQGEFCNRRKDGTRYWVDSTIVPLMDNAGKPRQYISIRRDITAQKEA 106


>pdb|2GJ3|A Chain A, Crystal Structure Of The Fad-Containing Pas Domain Of The
           Protein Nifl From Azotobacter Vinelandii.
 pdb|2GJ3|B Chain B, Crystal Structure Of The Fad-Containing Pas Domain Of The
           Protein Nifl From Azotobacter Vinelandii
          Length = 120

 Score = 39.3 bits (90), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 30/45 (66%)

Query: 41  KSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGMQVEVSK 85
           K + G L+N +KD T +   LTV P+ +++G+TI ++GM  + S+
Sbjct: 74  KPWSGVLVNRRKDKTLYLAELTVAPVLNEAGETIYYLGMHRDTSE 118


>pdb|2L4R|A Chain A, Nmr Solution Structure Of The N-Terminal Pas Domain Of
           Herg
          Length = 135

 Score = 36.2 bits (82), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 31/59 (52%)

Query: 19  FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
           FL GP T +    +I  A+   +     +  Y+KDG+ F  L+ V P+K++ G  I FI
Sbjct: 68  FLHGPRTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCFLCLVDVVPVKNEDGAVIMFI 126


>pdb|2L1M|A Chain A, Solution Structure Of The Eag Domain Of The Herg (Kv11.1)
           K+ Channel
          Length = 150

 Score = 36.2 bits (82), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 31/59 (52%)

Query: 19  FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
           FL GP T +    +I  A+   +     +  Y+KDG+ F  L+ V P+K++ G  I FI
Sbjct: 68  FLHGPRTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCFLCLVDVVPVKNEDGAVIMFI 126


>pdb|2L0W|A Chain A, Solution Nmr Structure Of The N-Terminal Pas Domain Of
           Herg Potassium Channel
          Length = 138

 Score = 36.2 bits (82), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 31/59 (52%)

Query: 19  FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
           FL GP T +    +I  A+   +     +  Y+KDG+ F  L+ V P+K++ G  I FI
Sbjct: 71  FLHGPRTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCFLCLVDVVPVKNEDGAVIMFI 129


>pdb|1BYW|A Chain A, Structure Of The N-Terminal Domain Of The Human-Erg
           Potassium Channel
          Length = 110

 Score = 35.4 bits (80), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 31/59 (52%)

Query: 19  FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFI 77
           FL GP T +    +I  A+   +     +  Y+KDG+ F  L+ V P+K++ G  I FI
Sbjct: 43  FLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCFLCLVDVVPVKNEDGAVIMFI 101


>pdb|3BY8|A Chain A, Crystal Structure Of The E.Coli Dcus Sensor Domain
          Length = 142

 Score = 28.9 bits (63), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 21/33 (63%)

Query: 60  LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVND 92
           L   TPI D++ K I  + + +E+S+ T+ +ND
Sbjct: 107 LRVFTPIYDENHKQIGVVAIGLELSRVTQQIND 139


>pdb|1OJG|A Chain A, Sensory Domain Of The Membraneous Two-Component Fumarate
           Sensor Dcus Of E. Coli
          Length = 136

 Score = 28.9 bits (63), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 21/33 (63%)

Query: 60  LLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVND 92
           L   TPI D++ K I  + + +E+S+ T+ +ND
Sbjct: 102 LRVFTPIYDENHKQIGVVAIGLELSRVTQQIND 134


>pdb|3H1T|A Chain A, The Fragment Structure Of A Putative Hsdr Subunit Of A
           Type I Restriction Enzyme From Vibrio Vulnificus Yj016
          Length = 590

 Score = 28.5 bits (62), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 25/48 (52%)

Query: 62  TVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDKALRPNGLSKSLIRYDA 109
           T TP+++D+  T ++ G  +      +G++D  L P  + + +   DA
Sbjct: 338 TATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDA 385


>pdb|1BXS|A Chain A, Sheep Liver Class 1 Aldehyde Dehydrogenase With Nad Bound
 pdb|1BXS|B Chain B, Sheep Liver Class 1 Aldehyde Dehydrogenase With Nad Bound
 pdb|1BXS|C Chain C, Sheep Liver Class 1 Aldehyde Dehydrogenase With Nad Bound
 pdb|1BXS|D Chain D, Sheep Liver Class 1 Aldehyde Dehydrogenase With Nad Bound
          Length = 501

 Score = 28.1 bits (61), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 21  QGPETDKNEVEKIRDAVRNGKSYCGRL 47
           QGP+ DK + EKI D + +GK    +L
Sbjct: 342 QGPQIDKEQYEKILDLIESGKKEGAKL 368


>pdb|3HXJ|A Chain A, Crystal Structure Of Pyrrolo-quinoline Quinone (pqq_dh)
           From Methanococcus Maripaludis, Northeast Structural
           Genomics Consortium Target Mrr86
 pdb|3HXJ|B Chain B, Crystal Structure Of Pyrrolo-quinoline Quinone (pqq_dh)
           From Methanococcus Maripaludis, Northeast Structural
           Genomics Consortium Target Mrr86
 pdb|3HXJ|C Chain C, Crystal Structure Of Pyrrolo-quinoline Quinone (pqq_dh)
           From Methanococcus Maripaludis, Northeast Structural
           Genomics Consortium Target Mrr86
 pdb|3HXJ|D Chain D, Crystal Structure Of Pyrrolo-quinoline Quinone (pqq_dh)
           From Methanococcus Maripaludis, Northeast Structural
           Genomics Consortium Target Mrr86
          Length = 330

 Score = 28.1 bits (61), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 7/64 (10%)

Query: 18  RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLT-----VTPIKDDSGK 72
           RF  G   + + V    D +  G SY G L     DGT  WN  T      TP+ D++G 
Sbjct: 249 RFKTGKRIESSPVIGNTDTIYFG-SYDGHLYAINPDGTEKWNFETGSWIIATPVIDENG- 306

Query: 73  TIKF 76
           TI F
Sbjct: 307 TIYF 310


>pdb|3SH7|A Chain A, Crystal Structure Of Fluorophore-Labeled Beta-Lactamase
           Penp
 pdb|3SH7|B Chain B, Crystal Structure Of Fluorophore-Labeled Beta-Lactamase
           Penp
 pdb|3SH8|A Chain A, Crystal Structure Of Fluorophore-Labeled Beta-Lactamase
           Penp In Complex With Cephaloridine
 pdb|3SH8|B Chain B, Crystal Structure Of Fluorophore-Labeled Beta-Lactamase
           Penp In Complex With Cephaloridine
 pdb|3SH9|A Chain A, Crystal Structure Of Fluorophore-Labeled Beta-Lactamase
           Penp In Complex With Cefotaxime
 pdb|3SH9|B Chain B, Crystal Structure Of Fluorophore-Labeled Beta-Lactamase
           Penp In Complex With Cefotaxime
          Length = 266

 Score = 26.9 bits (58), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 22  GPETDKNEVEKIRDAVRNGKSYCGRL 47
           GPE+ K E+ KI D V N + +C  L
Sbjct: 117 GPESLKKELRKIGDEVTNPERFCPEL 142


>pdb|3LY3|A Chain A, Crystal Structure Of Fluorophore-Labeled Class A
           Beta-Lactamase Penp
          Length = 259

 Score = 26.9 bits (58), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 22  GPETDKNEVEKIRDAVRNGKSYCGRL 47
           GPE+ K E+ KI D V N + +C  L
Sbjct: 112 GPESLKKELRKIGDEVTNPERFCPEL 137


>pdb|3LY4|A Chain A, Crystal Structure Of Fluorophore-Labeled Class A
           -Lactamase Penp- E166cb In Compelx With Penicillin G
 pdb|3M2J|A Chain A, Crystal Structure Of Fluorescein-Labeled Class A
           -Lactamase Penp
 pdb|3M2J|B Chain B, Crystal Structure Of Fluorescein-Labeled Class A
           -Lactamase Penp
 pdb|3M2K|A Chain A, Crystal Structure Of Fluorescein-Labeled Class A -Beta
           Lactamase Penp In Complex With Cefotaxime
 pdb|3M2K|B Chain B, Crystal Structure Of Fluorescein-Labeled Class A -Beta
           Lactamase Penp In Complex With Cefotaxime
          Length = 257

 Score = 26.6 bits (57), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 22  GPETDKNEVEKIRDAVRNGKSYCGRL 47
           GPE+ K E+ KI D V N + +C  L
Sbjct: 112 GPESLKKELRKIGDEVTNPERFCPEL 137


>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
          Length = 523

 Score = 26.6 bits (57), Expect = 6.3,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 6/64 (9%)

Query: 89  GVNDKALRPNGLSKSLIRYDARQKEKALGSITEVIQTVKRSQSHI-----RALSLDTTNK 143
           G+ND  ++ +   +  IRY   +K K L  +   +Q  +R +S I     RA   DT  +
Sbjct: 197 GLNDPLIQISSFDRPNIRYXLXEKFKPLDQLXRYVQE-QRGKSGIIYCNSRAKVEDTAAR 255

Query: 144 LEEK 147
           L+ K
Sbjct: 256 LQSK 259


>pdb|2ZTN|A Chain A, Hepatitis E Virus Orf2 (Genotype 3)
          Length = 478

 Score = 26.2 bits (56), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 10/22 (45%), Positives = 17/22 (77%)

Query: 137 SLDTTNKLEEKRSSILIVLCLH 158
           S++TT   EE+ +S L++LC+H
Sbjct: 132 SVETTGVAEEEATSGLVMLCIH 153


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.135    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,624,697
Number of Sequences: 62578
Number of extensions: 182214
Number of successful extensions: 460
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 410
Number of HSP's gapped (non-prelim): 60
length of query: 162
length of database: 14,973,337
effective HSP length: 91
effective length of query: 71
effective length of database: 9,278,739
effective search space: 658790469
effective search space used: 658790469
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)