Query 043549
Match_columns 162
No_of_seqs 147 out of 1499
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 10:12:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043549.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043549hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hia_A LOV protein; PAS, HTH, 99.7 2.9E-16 9.9E-21 104.9 9.9 103 1-106 42-148 (176)
2 1n9l_A PHOT-LOV1, putative blu 99.7 1.1E-15 3.8E-20 94.9 9.8 82 1-85 28-109 (109)
3 2gj3_A Nitrogen fixation regul 99.6 7.5E-15 2.6E-19 92.3 11.1 84 1-87 37-120 (120)
4 2pr5_A Blue-light photorecepto 99.6 8.9E-15 3E-19 93.5 8.6 88 1-93 34-121 (132)
5 3ewk_A Sensor protein; PAS dom 99.6 2.1E-14 7.1E-19 100.2 10.7 93 1-96 21-113 (227)
6 3f1p_A Endothelial PAS domain- 99.6 2.5E-15 8.4E-20 93.9 5.1 85 1-88 31-116 (117)
7 3f1p_B ARYL hydrocarbon recept 99.6 1.5E-14 5.2E-19 90.8 8.7 85 1-88 34-120 (121)
8 3mr0_A Sensory box histidine k 99.5 7.2E-14 2.5E-18 90.4 10.2 92 1-93 41-132 (142)
9 3p7n_A Sensor histidine kinase 99.5 1.2E-13 4.2E-18 97.9 11.8 89 1-92 98-186 (258)
10 3t50_A Blue-light-activated hi 99.5 5.8E-14 2E-18 88.5 9.0 89 1-92 32-120 (128)
11 3h9w_A Diguanylate cyclase wit 99.5 2E-14 6.7E-19 89.5 6.1 89 1-91 26-114 (115)
12 3ue6_A Aureochrome1; PAS/LOV d 99.5 1.4E-13 4.7E-18 90.5 9.0 88 1-91 70-157 (166)
13 4eet_B Phototropin-2; LOV, blu 99.5 4.8E-13 1.7E-17 82.1 10.2 84 1-87 32-115 (115)
14 2wkq_A NPH1-1, RAS-related C3 99.4 8.5E-13 2.9E-17 96.8 10.5 90 1-93 46-135 (332)
15 3mqq_A Transcriptional regulat 99.4 1.6E-13 5.6E-18 85.9 5.2 85 1-89 34-119 (120)
16 3nja_A Probable ggdef family p 99.4 1E-12 3.5E-17 81.8 8.2 85 1-88 39-125 (125)
17 3sw1_A Sensory box protein; li 99.4 1.9E-12 6.5E-17 84.7 8.3 94 1-97 60-153 (162)
18 2vv6_A FIXL, sensor protein FI 99.4 1.3E-12 4.3E-17 81.7 6.7 88 1-93 25-116 (119)
19 2z6d_A Phototropin-2; PAS-fold 99.4 8.2E-12 2.8E-16 77.4 10.1 88 1-91 41-128 (130)
20 3lyx_A Sensory BOX/ggdef domai 99.3 1.2E-11 4.2E-16 76.0 9.0 85 1-88 39-123 (124)
21 2v0u_A NPH1-1, LOV2; kinase, t 99.3 2.4E-11 8.3E-16 76.9 10.5 85 1-88 37-121 (146)
22 2kdk_A ARYL hydrocarbon recept 99.3 7.7E-11 2.6E-15 73.4 10.6 84 1-87 35-120 (121)
23 4eho_A Bacteriophytochrome, PA 99.3 3.2E-12 1.1E-16 101.7 5.1 86 1-90 550-635 (635)
24 4f3l_A Mclock, circadian locom 99.3 2.9E-12 9.9E-17 95.6 3.9 86 1-89 273-359 (361)
25 1byw_A Protein (human ERG pota 99.2 1.1E-10 3.6E-15 70.2 9.8 84 1-86 26-110 (110)
26 3ewk_A Sensor protein; PAS dom 99.2 3.7E-11 1.3E-15 83.6 8.2 79 1-82 143-227 (227)
27 3icy_A Sensor protein; sensory 99.2 3.9E-11 1.3E-15 74.0 7.3 83 1-84 36-118 (118)
28 3k3c_A Protein RV1364C/MT1410; 99.2 2.3E-11 7.9E-16 79.4 4.7 88 1-93 50-142 (158)
29 4f3l_B BMAL1B; BHLH, PAS, circ 99.2 2E-11 6.8E-16 91.8 4.1 85 1-88 300-386 (387)
30 3d72_A Vivid PAS protein VVD; 99.1 3.4E-10 1.2E-14 73.0 8.8 79 1-82 60-149 (149)
31 3luq_A Sensor protein; PAS, hi 99.1 8.3E-10 2.8E-14 67.3 10.1 79 1-84 35-114 (114)
32 3kx0_X Uncharacterized protein 99.1 2.4E-10 8.1E-15 77.0 7.0 87 1-92 70-161 (185)
33 2l0w_A Potassium voltage-gated 99.0 1.3E-09 4.5E-14 68.2 8.6 83 1-86 54-138 (138)
34 3mxq_A Sensor protein; PSI2, M 99.0 3.6E-10 1.2E-14 74.3 4.6 85 1-89 54-150 (152)
35 2r78_A Sensor protein; sensory 99.0 1.8E-09 6.2E-14 67.2 7.5 75 1-84 43-117 (117)
36 1d06_A Nitrogen fixation regul 99.0 1.3E-09 4.5E-14 68.9 6.8 79 1-84 48-130 (130)
37 3mjq_A Uncharacterized protein 99.0 1.2E-09 4.1E-14 67.9 6.1 87 1-93 31-117 (126)
38 1v9y_A Heme PAS sensor protein 98.9 3.2E-09 1.1E-13 69.1 5.5 87 1-92 72-162 (167)
39 3eeh_A Putative light and redo 98.8 5.5E-09 1.9E-13 64.1 4.8 80 1-84 44-125 (125)
40 3vol_A Aerotaxis transducer AE 98.7 5.3E-08 1.8E-12 68.2 8.4 82 2-96 67-148 (233)
41 3olo_A Two-component sensor hi 98.7 1.4E-08 4.7E-13 62.3 4.3 74 1-84 45-118 (118)
42 3rty_A Period circadian protei 98.6 8.4E-08 2.9E-12 70.8 6.0 85 1-88 176-266 (339)
43 3mfx_A Sensory BOX/ggdef famil 98.6 6.1E-08 2.1E-12 61.8 4.5 79 1-85 39-124 (129)
44 2qkp_A Uncharacterized protein 98.5 8.2E-07 2.8E-11 58.1 9.6 85 1-92 54-139 (151)
45 4dj3_A Period circadian protei 98.5 3.3E-07 1.1E-11 67.1 7.7 83 1-86 196-282 (317)
46 3bwl_A Sensor protein; structu 98.4 7.5E-07 2.6E-11 55.3 6.9 76 1-84 49-126 (126)
47 3gdi_A Period circadian protei 98.4 8.1E-07 2.8E-11 64.8 7.5 85 1-88 187-274 (309)
48 3a0r_A Sensor protein; four he 98.4 3.1E-06 1.1E-10 62.0 10.5 83 1-93 40-123 (349)
49 2vlg_A Sporulation kinase A; h 98.4 2.9E-07 1E-11 57.0 4.0 74 1-80 31-105 (111)
50 1ll8_A PAS kinase; PAS domain, 98.4 1.2E-07 4E-12 58.2 2.0 78 1-84 31-113 (114)
51 4dj2_A Period circadian protei 98.3 6.6E-07 2.3E-11 65.5 5.5 85 1-88 198-285 (320)
52 3fg8_A Uncharacterized protein 98.3 3.7E-07 1.3E-11 56.6 3.6 75 1-86 44-118 (118)
53 3cax_A Uncharacterized protein 98.3 2.6E-06 9E-11 63.6 8.5 84 1-92 270-353 (369)
54 4hi4_A Aerotaxis transducer AE 98.3 9.1E-06 3.1E-10 50.4 9.6 72 2-86 50-121 (121)
55 3fc7_A HTR-like protein, senso 98.1 8.7E-07 3E-11 54.6 1.8 74 1-84 51-125 (125)
56 3b33_A Sensor protein; structu 98.1 3.9E-06 1.3E-10 51.1 4.6 76 1-84 39-115 (115)
57 3a0s_A Sensor protein; PAS-fol 97.8 0.00011 3.8E-09 42.0 6.6 72 1-82 24-96 (96)
58 1mzu_A PPR; photoactive yellow 97.2 0.0016 5.5E-08 41.1 6.7 70 1-76 54-125 (129)
59 1nwz_A PYP, photoactive yellow 97.1 0.0012 3.9E-08 41.6 5.7 69 2-76 50-120 (125)
60 2w0n_A Sensor protein DCUS; si 97.1 0.00011 3.9E-09 44.2 0.9 68 2-84 48-118 (118)
61 2jhe_A Transcription regulator 96.9 0.00026 8.9E-09 47.1 1.3 73 1-88 112-190 (190)
62 1oj5_A Steroid receptor coacti 96.7 0.0011 3.7E-08 41.9 2.8 80 3-85 30-114 (132)
63 2ykf_A Pdtas, probable sensor 94.8 0.0014 4.9E-08 47.5 0.0 36 57-93 258-293 (305)
64 3rty_A Period circadian protei 95.6 0.057 2E-06 39.7 7.9 81 1-88 26-143 (339)
65 4f3l_A Mclock, circadian locom 89.6 0.64 2.2E-05 34.2 5.4 31 1-34 118-148 (361)
66 4f3l_B BMAL1B; BHLH, PAS, circ 84.8 0.44 1.5E-05 35.5 2.1 27 1-30 119-145 (387)
67 4fpp_A Phosphotransferase; fou 77.8 1.3 4.4E-05 30.6 2.4 34 56-90 4-37 (247)
68 3gdi_A Period circadian protei 68.8 2 6.9E-05 31.0 1.6 28 1-31 48-75 (309)
69 4dah_A Sporulation kinase D; a 62.7 21 0.00073 23.4 5.8 55 32-88 100-154 (217)
70 1p0z_A Sensor kinase CITA; tra 55.4 32 0.0011 20.8 6.4 25 62-86 104-128 (131)
71 4dj2_A Period circadian protei 48.5 1.9 6.5E-05 31.3 -1.5 26 1-29 59-84 (320)
72 4dj3_A Period circadian protei 47.2 2.8 9.6E-05 30.4 -0.8 28 1-31 59-86 (317)
73 3by8_A Sensor protein DCUS; hi 40.5 35 0.0012 21.1 3.7 25 62-86 109-133 (142)
74 2ool_A Sensor protein; bacteri 34.8 40 0.0014 24.6 3.7 54 1-61 65-122 (337)
75 3lif_A Putative diguanylate cy 28.8 1.3E+02 0.0044 20.0 8.1 54 32-87 100-155 (254)
76 1qey_A MNT-C, protein (regulat 22.9 64 0.0022 14.4 2.6 22 139-160 2-23 (31)
77 1vq8_K 50S ribosomal protein L 21.1 48 0.0016 20.7 1.7 26 50-75 81-106 (132)
78 3c8c_A Methyl-accepting chemot 21.0 1.8E+02 0.006 18.8 5.7 29 58-86 118-147 (240)
No 1
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=99.68 E-value=2.9e-16 Score=104.94 Aligned_cols=103 Identities=26% Similarity=0.376 Sum_probs=86.9
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCceEEEEEEEecCCceEEEEEEeeeeeCCCCCeEEEEEEe
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGMQ 80 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~~~~v~~~ 80 (162)
++||++++++|++ +..+.++.........+.+.+..+..+..++...+++|+.+|+.+.+.|+.+.+|.+.+++++.
T Consensus 42 ~~G~~~~e~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~~~~g~~~~~~~~~ 118 (176)
T 4hia_A 42 MTGYTEGQILGFN---CRFLQRGDENAQARADIRDALKLGRELQVVLRNYRANDEPFDNLLFLHPVGGRPDAPDYFLGSQ 118 (176)
T ss_dssp HHTCCHHHHTTSC---GGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTCCEEEEEEEEEEESSBTTBCSEEEEEE
T ss_pred HHCcCHHHHcCCC---cceeeCCCCCHHHHHHHHHHHHcCCceEEEEEEEcCCCCEEEEEEEEEEeeCCCCCeEEEEEEE
Confidence 4799999999999 8878777777777788888888899999999999999999999999999999999999999999
Q ss_pred eeccccchhhhhhhcc----cCCchhhhhh
Q 043549 81 VEVSKYTEGVNDKALR----PNGLSKSLIR 106 (162)
Q Consensus 81 ~DITe~k~~e~e~~~~----~~~l~~~~~~ 106 (162)
+|||++|++|++..+. .|+|||+...
T Consensus 119 ~DITe~k~~e~~~~~a~~d~LtgL~NR~~~ 148 (176)
T 4hia_A 119 FELGRSGNSEEAAAAGHAGALTGELARIGT 148 (176)
T ss_dssp EEESSSGGGHHHHHHHHHHHHHHHHHHTTS
T ss_pred EECcHhhHHHHHHHHhhhhHHhhhhhhhhh
Confidence 9999999977662111 1566776543
No 2
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.65 E-value=1.1e-15 Score=94.91 Aligned_cols=82 Identities=56% Similarity=0.948 Sum_probs=74.9
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCceEEEEEEEecCCceEEEEEEeeeeeCCCCCeEEEEEEe
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGMQ 80 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~~~~v~~~ 80 (162)
++||+++|++|++ +..+.++.........+++.+..++.+.++++.+++||+.+|+.+++.|+.|++|.+.+++++.
T Consensus 28 l~Gy~~~e~~G~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~~~~~~~~pi~d~~G~~~~~v~~~ 104 (109)
T 1n9l_A 28 MTGYGPDEVLGHN---CRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPFWNLLTVTPIKTPDGRVSKFVGVQ 104 (109)
T ss_dssp HHCCCHHHHTTSC---GGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred HHCcCHHHHcCCC---chhcCCCCCCHHHHHHHHHHHHcCCcEEEEEEEEcCCCCEEEEEEEEEEEECCCCCEEEEEEEE
Confidence 4799999999999 8777777766667788889999999999999999999999999999999999999999999999
Q ss_pred eeccc
Q 043549 81 VEVSK 85 (162)
Q Consensus 81 ~DITe 85 (162)
+|||+
T Consensus 105 ~DITe 109 (109)
T 1n9l_A 105 VDVTS 109 (109)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 99996
No 3
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=99.62 E-value=7.5e-15 Score=92.30 Aligned_cols=84 Identities=25% Similarity=0.434 Sum_probs=74.6
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCceEEEEEEEecCCceEEEEEEeeeeeCCCCCeEEEEEEe
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGMQ 80 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~~~~v~~~ 80 (162)
++||+++|++|++ ...+.++.........+++.+..+..+.+++..+++||+.+|+.+.+.|+.|.+|.+.+++++.
T Consensus 37 ~~G~~~~elig~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~~~~g~~~~~v~~~ 113 (120)
T 2gj3_A 37 ITGYGSEEVLGKN---ESILSNGTTPRLVYQALWGRLAQKKPWSGVLVNRRKDKTLYLAELTVAPVLNEAGETIYYLGMH 113 (120)
T ss_dssp HHCCCTTGGGGCB---GGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred HHCcCHHHHcCCC---HHHcCCCCCCHHHHHHHHHHHHcCCCEEEEEEEEcCCCCEEEEEEEEEEEECCCCCEEEEEEEe
Confidence 4799999999999 7777766666556677788888888999999999999999999999999999999999999999
Q ss_pred eeccccc
Q 043549 81 VEVSKYT 87 (162)
Q Consensus 81 ~DITe~k 87 (162)
+|||++|
T Consensus 114 ~DITe~k 120 (120)
T 2gj3_A 114 RDTSELH 120 (120)
T ss_dssp EECCSCC
T ss_pred ccCcccC
Confidence 9999986
No 4
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=99.58 E-value=8.9e-15 Score=93.46 Aligned_cols=88 Identities=38% Similarity=0.608 Sum_probs=75.0
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCceEEEEEEEecCCceEEEEEEeeeeeCCCCCeEEEEEEe
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGMQ 80 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~~~~v~~~ 80 (162)
++||+++|++|++ +..+.++.........+.+.+..+..+..+.+.+++||+.+|+.+.+.|+.+.+ +.+++++.
T Consensus 34 ~~G~~~~el~g~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~~~~~~~~~~~~~~--~~~~~~~~ 108 (132)
T 2pr5_A 34 MTGYETEEILGKN---CRFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPMEIED--KTYFVGIQ 108 (132)
T ss_dssp HHSCCHHHHTTSC---GGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEEEEEEEEEETT--EEEEEEEE
T ss_pred HhCcCHHHHcCCC---hhhhCCCCCCHHHHHHHHHHHHcCCCeEEEEEEEecCCCeeeeEEEEEeccCCC--eeEEEEEE
Confidence 4799999999999 777766666666667777888888889999999999999999999999998765 78899999
Q ss_pred eeccccchhhhhh
Q 043549 81 VEVSKYTEGVNDK 93 (162)
Q Consensus 81 ~DITe~k~~e~e~ 93 (162)
+|||++|++|++.
T Consensus 109 ~DITe~k~~e~~l 121 (132)
T 2pr5_A 109 NDITKQKEYEKLL 121 (132)
T ss_dssp EECHHHHHHHHHH
T ss_pred EeCcHHHHHHHHH
Confidence 9999999976554
No 5
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.57 E-value=2.1e-14 Score=100.19 Aligned_cols=93 Identities=24% Similarity=0.422 Sum_probs=82.8
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCceEEEEEEEecCCceEEEEEEeeeeeCCCCCeEEEEEEe
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGMQ 80 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~~~~v~~~ 80 (162)
++||+++|++|++ +..+.++.........+++.+..+..+.+++...++||+.+|+..+..|+.|.+|.+.+++++.
T Consensus 21 l~Gy~~~el~G~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~p~~d~~g~~~~~~~~~ 97 (227)
T 3ewk_A 21 VSRYGREELVGQD---HRIVNSGYHGKAYIRDMWRTISRGNIWQGEFCNRRKDGTRYWVDSTIVPLMDNAGKPRQYISIR 97 (227)
T ss_dssp HTTCCHHHHTTSB---GGGGCCSCSCHHHHHHHHHHHTTTCCEEEEEEEECSSSCEEEEEEEEEEEECSSSCEEEEEEEE
T ss_pred HHCcCHHHHcCCC---HHHcCCCCCCHHHHHHHHHHHHcCCeEEEEEEEEcCCCCEEeeeeEEEEEEcCCCCEEEEEEEE
Confidence 5899999999999 8777777666777778888899999999999999999999999999999999999999999999
Q ss_pred eeccccchhhhhhhcc
Q 043549 81 VEVSKYTEGVNDKALR 96 (162)
Q Consensus 81 ~DITe~k~~e~e~~~~ 96 (162)
+|||++|++|++.+..
T Consensus 98 ~DIT~~k~~e~~l~~~ 113 (227)
T 3ewk_A 98 RDITAQKEAEAQLARL 113 (227)
T ss_dssp EECTTTTHHHHHHHHH
T ss_pred EehhhHHHHHHHHHHH
Confidence 9999999987665443
No 6
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=99.57 E-value=2.5e-15 Score=93.91 Aligned_cols=85 Identities=14% Similarity=0.131 Sum_probs=74.5
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCceEEEEEEEecCCceEEEEEEeeeeeCC-CCCeEEEEEE
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDD-SGKTIKFIGM 79 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~-~g~~~~~v~~ 79 (162)
++||+++|++|++ +..+.+|++.......+.+.+..+..+..+++.++++|+.+|+.....|+.|+ +|.+.+++++
T Consensus 31 ~~Gy~~~el~g~~---~~~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~w~~~~~~~~~d~~~g~~~~iv~~ 107 (117)
T 3f1p_A 31 LIGYHPEELLGRS---AYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYVWLETQGTVIYNPRNLQPQCIMCV 107 (117)
T ss_dssp HHCCCHHHHTTSB---GGGGBCGGGHHHHHHHHHHHHHHSEEECCCEEEECTTSSEEEEEEEEEEEEETTTTEEEEEEEE
T ss_pred hhCCCHHHHcCCc---hhheECHHHHHHHHHHHHHHHhCCCeeeeEEEEEecCCCEEEEEEeeEEEECCCCCCceEEEEE
Confidence 4799999999999 77777777766666777777887888888999999999999999999999987 7888999999
Q ss_pred eeeccccch
Q 043549 80 QVEVSKYTE 88 (162)
Q Consensus 80 ~~DITe~k~ 88 (162)
.+|||++|+
T Consensus 108 ~~DITer~~ 116 (117)
T 3f1p_A 108 NYVLSEIEK 116 (117)
T ss_dssp EEECSCCBC
T ss_pred eeecccccc
Confidence 999999987
No 7
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=99.57 E-value=1.5e-14 Score=90.83 Aligned_cols=85 Identities=14% Similarity=0.137 Sum_probs=70.6
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHH-cCCceEEEEEEEecCCceEEEEEEeeeeeCC-CCCeEEEEE
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVR-NGKSYCGRLLNYKKDGTPFWNLLTVTPIKDD-SGKTIKFIG 78 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~-~g~~~~~v~ 78 (162)
++||+++|++|++ +..+.+|++.......+.+.+. .+..+..+++.+++||+.+|+..+..|+.|+ .|.+.++++
T Consensus 34 ~~G~~~~el~g~~---~~~~i~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~w~~~~~~~~~~~~~g~~~~iv~ 110 (121)
T 3f1p_B 34 TVGYQPQELLGKN---IVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIIC 110 (121)
T ss_dssp HHSCCGGGTTTSB---GGGGBCTTTHHHHHHHHHHHTTSTTCCEEEEEEEECTTSCEEEEEEEEEEECCTTCCCCCEEEE
T ss_pred hhCCChHHHcCCC---HHHeECHHHHHHHHHHHHHHHhcCCCcccEEEEEEecCCCEEEEEEEEEEEECCCCCceeEEEE
Confidence 4799999999999 7777777776666666666664 4557889999999999999999999999987 788889999
Q ss_pred Eeeeccccch
Q 043549 79 MQVEVSKYTE 88 (162)
Q Consensus 79 ~~~DITe~k~ 88 (162)
+.+|||++|+
T Consensus 111 ~~~DIT~~kq 120 (121)
T 3f1p_B 111 TNTNVKNSSQ 120 (121)
T ss_dssp EEEECCCC--
T ss_pred EeEEcccccC
Confidence 9999999987
No 8
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=99.54 E-value=7.2e-14 Score=90.45 Aligned_cols=92 Identities=11% Similarity=0.149 Sum_probs=75.2
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCceEEEEEEEecCCceEEEEEEeeeeeCCCCCeEEEEEEe
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGMQ 80 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~~~~v~~~ 80 (162)
++||+++++.+... .+..+++|++.......+...+..+..+..+++..+++|..+|+...+.|+.|++|.+..++|+.
T Consensus 41 ~~G~~~~~~~~~~~-~~~~~ihpdD~~~~~~~~~~~~~~~~~~~~e~r~~~~~G~~~w~~~~~~~~~d~~g~~~~~~G~~ 119 (142)
T 3mr0_A 41 IMGYEDHELPDEIT-GHRESIHPDDRARVLAALKAHLEHRDTYDVEYRVRTRSGDFRWIQSRGQALWNSAGEPYRMVGWI 119 (142)
T ss_dssp HTTCCGGGSCSEEC----CCBCTTTHHHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred HhCCCccccCCCHH-HHHhhcCHHHHHHHHHHHHHHHhCCCceEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEE
Confidence 47999988876320 03345667776666777788888888899999999999999999999999999999999999999
Q ss_pred eeccccchhhhhh
Q 043549 81 VEVSKYTEGVNDK 93 (162)
Q Consensus 81 ~DITe~k~~e~e~ 93 (162)
+|||++|++|+++
T Consensus 120 ~DITerk~~E~~L 132 (142)
T 3mr0_A 120 MDVTDRKRDEDAL 132 (142)
T ss_dssp EECHHHHHHHHHH
T ss_pred EcCchHHHHHHHH
Confidence 9999999976543
No 9
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=99.53 E-value=1.2e-13 Score=97.89 Aligned_cols=89 Identities=39% Similarity=0.587 Sum_probs=74.8
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCceEEEEEEEecCCceEEEEEEeeeeeCCCCCeEEEEEEe
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGMQ 80 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~~~~v~~~ 80 (162)
++||+++|++|++ +..+.++.........+.+.+..+..+..+.+..++||+.+|+.+.+.|+.|++|.+.++++++
T Consensus 98 l~G~~~~el~g~~---~~~l~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~d~~g~~~~~v~~~ 174 (258)
T 3p7n_A 98 LTGYSEEECVGRN---CRFLAGSGTEPWLTDKIRQGVREHKPVLVEILNYKKDGTPFRNAVLVAPIYDDDDELLYFLGSQ 174 (258)
T ss_dssp HHCCCGGGTTTSC---GGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCSEEEEEEE
T ss_pred HcCCCHHHHCCCC---hhhccCCCCchhHHHHHHHHHHcCCCeEEEEEEEcCCCCEEEEeeEEEEEEcCCCCEEEEEEEe
Confidence 4799999999999 8888888877777888888999999999999999999999999999999999999999999999
Q ss_pred eeccccchhhhh
Q 043549 81 VEVSKYTEGVND 92 (162)
Q Consensus 81 ~DITe~k~~e~e 92 (162)
+|||++|+.+.+
T Consensus 175 ~DITerk~~~~e 186 (258)
T 3p7n_A 175 VEVDDDQPNMGM 186 (258)
T ss_dssp EEC-------CH
T ss_pred eecchhhhhhhH
Confidence 999999544333
No 10
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=99.53 E-value=5.8e-14 Score=88.46 Aligned_cols=89 Identities=30% Similarity=0.545 Sum_probs=77.2
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCceEEEEEEEecCCceEEEEEEeeeeeCCCCCeEEEEEEe
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGMQ 80 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~~~~v~~~ 80 (162)
++||+.++++|++ +..+.++.........+...+..+..+..+....+++|..+|+.+.+.|+.+.+|.+.++++++
T Consensus 32 l~g~~~~e~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~ 108 (128)
T 3t50_A 32 LTGYEADEVMGRN---CRFLQGHGTDPAHVRAIKSAIAAEKPIDIDIINYKKSGEAFWNRLHISPVHNANGRLQHFVSSQ 108 (128)
T ss_dssp HHCCCHHHHTTSC---GGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred HhCcCHHHHcCCC---HhhhcCCccCHHHHHHHHHHHHcCCCceeEEEEEcCCCCEEEEEEEEEEEECCCCCEEEEEEEE
Confidence 4799999999999 7777777777777778888888999999999999999999999999999999999999999999
Q ss_pred eeccccchhhhh
Q 043549 81 VEVSKYTEGVND 92 (162)
Q Consensus 81 ~DITe~k~~e~e 92 (162)
+|||++|++|++
T Consensus 109 ~DITe~k~~e~~ 120 (128)
T 3t50_A 109 LDVTLELVPRGS 120 (128)
T ss_dssp EECHHHHC----
T ss_pred EEcchhhhhhhh
Confidence 999999996654
No 11
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=99.52 E-value=2e-14 Score=89.55 Aligned_cols=89 Identities=17% Similarity=0.113 Sum_probs=72.4
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCceEEEEEEEecCCceEEEEEEeeeeeCCCCCeEEEEEEe
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGMQ 80 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~~~~v~~~ 80 (162)
++||+++++.|... +..+.+|++.......+.+.+..+..+..+++.+++||+.+|+...+.|+.|++|.+.+++|+.
T Consensus 26 l~G~~~~e~~~~~~--~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~w~~~~~~~~~d~~G~~~~~~G~~ 103 (115)
T 3h9w_A 26 LLGWPQGSWKSVED--WATRMHPEDQEWVVNFCVKQSECGVDHEADYRALHRDGHYVWIRDVVHVVRDDSGEVEALIGFM 103 (115)
T ss_dssp HHCSCGGGCCBHHH--HHHSBCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred HhCCChHHccCHHH--HHHhcCHHHHHHHHHHHHHHHhcCCcccEEEEEEcCCCCEEEEEEEEEEEECCCCCEEEEEEEE
Confidence 47999999988430 2335566655556667778888888889999999999999999999999999999999999999
Q ss_pred eeccccchhhh
Q 043549 81 VEVSKYTEGVN 91 (162)
Q Consensus 81 ~DITe~k~~e~ 91 (162)
.|||++|++|+
T Consensus 104 ~Dit~~k~~~~ 114 (115)
T 3h9w_A 104 FDISLEHHHHH 114 (115)
T ss_dssp EECGGGGC---
T ss_pred eccCccccccc
Confidence 99999999653
No 12
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=99.49 E-value=1.4e-13 Score=90.51 Aligned_cols=88 Identities=39% Similarity=0.704 Sum_probs=78.7
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCceEEEEEEEecCCceEEEEEEeeeeeCCCCCeEEEEEEe
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGMQ 80 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~~~~v~~~ 80 (162)
++||++++++|++ +..+.++.........+...+..+..+..+....+++|..+|+.+.+.|+.+++|.+.++++++
T Consensus 70 l~G~~~~e~~g~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~ 146 (166)
T 3ue6_A 70 LTGYSLDQILGRN---CRFLQGPETDPRAVDKIRNAITKGVDTSVCLLNYRQDGTTFWNLFFVAGLRDSKGNIVNYVGVQ 146 (166)
T ss_dssp HHCCCHHHHTTSC---GGGGCCTTSCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEC
T ss_pred HhCcCHHHHcCCC---HhheeCCCCCHHHHHHHHHHHhcCCceEEEEEEEcCCCCEEEEEEEEEeeeCCCCCEEEEEEEE
Confidence 4799999999999 7777777777777778888888899999999999999999999999999999999999999999
Q ss_pred eeccccchhhh
Q 043549 81 VEVSKYTEGVN 91 (162)
Q Consensus 81 ~DITe~k~~e~ 91 (162)
+|||++|+++.
T Consensus 147 ~DITe~k~~~~ 157 (166)
T 3ue6_A 147 SKVSEDYAKLL 157 (166)
T ss_dssp CBCCHHHHHHH
T ss_pred EechHHHHHHH
Confidence 99999998654
No 13
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=99.48 E-value=4.8e-13 Score=82.13 Aligned_cols=84 Identities=43% Similarity=0.805 Sum_probs=75.6
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCceEEEEEEEecCCceEEEEEEeeeeeCCCCCeEEEEEEe
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGMQ 80 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~~~~v~~~ 80 (162)
++||++++++|++ +..+.++.........+.+.+..+..+..+....+++|..+|+.+...|+.+.+|.+.+++++.
T Consensus 32 ~~g~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~ 108 (115)
T 4eet_B 32 LTEYSREEILGRN---ARFLQGPETDQATVQKIRDAIRDQRETTVQLINYTKSGKKFWNLLHLQPVRDQKGELQYFIGVQ 108 (115)
T ss_dssp HHCCCHHHHTTSC---GGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred HHCcCHHHHhCCC---HHHhcCCCCChHHHHHHHHHHHcCCCcceEEEEecCCCCEEEEEEEEEEEECCCCCEEEEEEEE
Confidence 4799999999999 7777777777777778888888999999999999999999999999999999999999999999
Q ss_pred eeccccc
Q 043549 81 VEVSKYT 87 (162)
Q Consensus 81 ~DITe~k 87 (162)
+|||+++
T Consensus 109 ~DITer~ 115 (115)
T 4eet_B 109 LDGSDHV 115 (115)
T ss_dssp EECSCCC
T ss_pred EeecccC
Confidence 9999975
No 14
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.44 E-value=8.5e-13 Score=96.78 Aligned_cols=90 Identities=38% Similarity=0.745 Sum_probs=80.9
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCceEEEEEEEecCCceEEEEEEeeeeeCCCCCeEEEEEEe
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGMQ 80 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~~~~v~~~ 80 (162)
++||+++|++|++ +..+.++.........+.+.+..+..+..+.+..++||+.+|+.+.+.|+.|.+|.+.+++++.
T Consensus 46 l~G~~~~el~G~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~d~~g~~~~~v~~~ 122 (332)
T 2wkq_A 46 LTEYSREEILGRN---ARFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQ 122 (332)
T ss_dssp HHCCCHHHHTTSC---GGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred HhCCCHHHHcCCC---chhhcCCCCCHHHHHHHHHHHHcCCeeEEEEEEEcCCCCEEEEeeEEEEeEcCCCCEEEEEEEe
Confidence 4799999999999 7777777777777788889999999999999999999999999999999999999999999999
Q ss_pred eeccccchhhhhh
Q 043549 81 VEVSKYTEGVNDK 93 (162)
Q Consensus 81 ~DITe~k~~e~e~ 93 (162)
+|||++++.+++.
T Consensus 123 ~DITe~k~~e~~~ 135 (332)
T 2wkq_A 123 LDGTEHVRDAAER 135 (332)
T ss_dssp EEESSCCCHHHHH
T ss_pred ccCchhhhhhhhc
Confidence 9999999876543
No 15
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=99.42 E-value=1.6e-13 Score=85.92 Aligned_cols=85 Identities=16% Similarity=0.166 Sum_probs=64.4
Q ss_pred CCCCCcccccCCCCCCcccccCCCCC-HHHHHHHHHHHHcCCceEEEEEEEecCCceEEEEEEeeeeeCCCCCeEEEEEE
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETD-KNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGM 79 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~~~~v~~ 79 (162)
++||++++++|++ +..++++... ......+.+.+..+..+..+.+..++||+.+|+.+...|+ +.+|...+++++
T Consensus 34 l~G~~~~el~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~-~~~~~~~~~v~~ 109 (120)
T 3mqq_A 34 IFRCARADLIGRS---FEVLYPSSDEFERIGERISPVMIAHGSYADDRIMKRAGGELFWCHVTGRAL-DRTAPLAAGVWT 109 (120)
T ss_dssp HTTSCHHHHTTCB---GGGGSSSHHHHHHHHHHHHHHHHHHSCEEEEEEEECTTSCEEEEEEEEEES-STTSTTSSEEEE
T ss_pred HhCcCHHHhCCCc---hhhccCChhhHHHHHHHHHHHHhcCCcceEEEEEEeCCCCEEEEEEEEEEC-CCCCCceeEEEE
Confidence 5899999999999 7766654322 2334455566677788899999999999999999999999 555666788999
Q ss_pred eeeccccchh
Q 043549 80 QVEVSKYTEG 89 (162)
Q Consensus 80 ~~DITe~k~~ 89 (162)
++|||++|+.
T Consensus 110 ~~DITerk~~ 119 (120)
T 3mqq_A 110 FEDLSATRRV 119 (120)
T ss_dssp EEESCC----
T ss_pred EEcccHhhcc
Confidence 9999999983
No 16
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=99.41 E-value=1e-12 Score=81.80 Aligned_cols=85 Identities=9% Similarity=0.040 Sum_probs=69.3
Q ss_pred CCCCCcccccC--CCCCCcccccCCCCCHHHHHHHHHHHHcCCceEEEEEEEecCCceEEEEEEeeeeeCCCCCeEEEEE
Q 043549 1 MSDPTGKELIG--CCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78 (162)
Q Consensus 1 l~G~~~~e~~g--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~~~~v~ 78 (162)
++||+++++.| .. +..+.+|++.......+...+..+..+..+++..+++|..+|+.....|+.+.+|.+.++++
T Consensus 39 ~~G~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~g 115 (125)
T 3nja_A 39 IFGTDSATFDATEDA---YFQRVHPDDRARVRRELDRHVLGDRPFDVEYRIVRPDGQVRELLERNHIQRQASGQVDHLWG 115 (125)
T ss_dssp HHTCCTTTCCCBHHH---HHHHBCTTTHHHHHHHHHHHHHSCCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEE
T ss_pred HhCCCcccccccHHH---HHhhcChhHHHHHHHHHHHHHhcCCCceEEEEEECCCCCEEEEEEeeEEEECCCCCEEEEEE
Confidence 46899999988 44 33455666666666677788888888889999999999999999999999999999999999
Q ss_pred Eeeeccccch
Q 043549 79 MQVEVSKYTE 88 (162)
Q Consensus 79 ~~~DITe~k~ 88 (162)
+.+|||++|+
T Consensus 116 ~~~DITe~k~ 125 (125)
T 3nja_A 116 TVIDMTEHKQ 125 (125)
T ss_dssp EEEECCC---
T ss_pred EEEecccccC
Confidence 9999999885
No 17
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=99.38 E-value=1.9e-12 Score=84.71 Aligned_cols=94 Identities=35% Similarity=0.552 Sum_probs=80.5
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCceEEEEEEEecCCceEEEEEEeeeeeCCCCCeEEEEEEe
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGMQ 80 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~~~~v~~~ 80 (162)
++||+.++++|++ +..+.++.........+...+..+..+..+....+++|..+|+.+.+.|+.+.+|.+.++++++
T Consensus 60 ~~g~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~ 136 (162)
T 3sw1_A 60 LTGYSRDEILYQD---CRFLQGDDRDQLGRARIRKAMAEGRPCREVLRNYRKDGSAFWNELSITPVKSDFDQRTYFIGIQ 136 (162)
T ss_dssp HHTCCHHHHTTSB---GGGGTTTCCCCHHHHHHHHHHHHTCCEEEEEEEECTTCCEEEEEEEEEEEECSSSSCEEEEEEE
T ss_pred HHCCCHHHHcCCC---cceecCCCcCHHHHHHHHHHHhcCCCCcceEEEECCCCCEEEEEEEEEEeecCCCCEEEEEEEE
Confidence 4689999999999 7777766666666777888888888999999999999999999999999999999999999999
Q ss_pred eeccccchhhhhhhccc
Q 043549 81 VEVSKYTEGVNDKALRP 97 (162)
Q Consensus 81 ~DITe~k~~e~e~~~~~ 97 (162)
+|||++++.+.+.+...
T Consensus 137 ~DiTe~k~~e~~l~~~~ 153 (162)
T 3sw1_A 137 KDVSRQVELERELAELR 153 (162)
T ss_dssp EECHHHHHHHHHHHHHT
T ss_pred EeCcHHHHHHHHHHHHH
Confidence 99999999776654443
No 18
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=99.37 E-value=1.3e-12 Score=81.75 Aligned_cols=88 Identities=14% Similarity=0.108 Sum_probs=55.6
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCc----eEEEEEEEecCCceEEEEEEeeeeeCCCCCeEEE
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKS----YCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKF 76 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~~~~ 76 (162)
++||+++|++|++ ...+.++.........+......+.. ...+....++||+.+|+.+++.|+.+. ....+
T Consensus 25 l~G~~~~el~G~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~~~~~~~~~--~~~~~ 99 (119)
T 2vv6_A 25 LFGWSELEAIGQN---VNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRRDGTTFPMHLSIGEMQSG--GEPYF 99 (119)
T ss_dssp HHCCCHHHHTTSB---GGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECTTSCEEEEEEEEEEEEET--TEEEE
T ss_pred HhCCCHHHHcCCC---HHHhCCchHHHHHHHHHHHHhcCCCcccCCCceEEEEEeCCCCEEEEEEEEEEEEEC--CeEEE
Confidence 4799999999999 77666554322222333333333322 345677889999999999999999763 34568
Q ss_pred EEEeeeccccchhhhhh
Q 043549 77 IGMQVEVSKYTEGVNDK 93 (162)
Q Consensus 77 v~~~~DITe~k~~e~e~ 93 (162)
+++++|||++|++|+++
T Consensus 100 ~~~~~DITerk~~e~~l 116 (119)
T 2vv6_A 100 TGFVRDLTEHQQTQARL 116 (119)
T ss_dssp EEEEEECC---------
T ss_pred EEEEEEcHHHHHHHHHH
Confidence 99999999999976543
No 19
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=99.36 E-value=8.2e-12 Score=77.38 Aligned_cols=88 Identities=82% Similarity=1.303 Sum_probs=73.9
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCceEEEEEEEecCCceEEEEEEeeeeeCCCCCeEEEEEEe
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGMQ 80 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~~~~v~~~ 80 (162)
++||+.++++|++ +..+.++.........+...+..+..+..+....+++|..+|+.+...|+.+.+|.+.++++++
T Consensus 41 ~~g~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~ 117 (130)
T 2z6d_A 41 MTGYSSKEIVGRN---CRFLQGPDTDKNEVAKIRDCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDQGNTIKFIGMQ 117 (130)
T ss_dssp HHCCCHHHHTTSC---GGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred HhCcCHHHHcCCC---hhhccCCCCCchHHHHHHHHHHcCCcceeEEEEEcCCCcEEEEEEEEEEEECCCCCeeEEEEEE
Confidence 3689999999999 7777777666666777778888888888888888999999999999999999999999999999
Q ss_pred eeccccchhhh
Q 043549 81 VEVSKYTEGVN 91 (162)
Q Consensus 81 ~DITe~k~~e~ 91 (162)
+|||+++++|.
T Consensus 118 ~Dit~~~~~e~ 128 (130)
T 2z6d_A 118 VEVSKYTEGVN 128 (130)
T ss_dssp EECCTTC----
T ss_pred ecchHHHHhhc
Confidence 99999998654
No 20
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=99.32 E-value=1.2e-11 Score=76.05 Aligned_cols=85 Identities=19% Similarity=0.305 Sum_probs=71.8
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCceEEEEEEEecCCceEEEEEEeeeeeCCCCCeEEEEEEe
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGMQ 80 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~~~~v~~~ 80 (162)
++|++.++++|++ +..+.++.........+.+.+..+..+..+.....++|..+|+.+...|+.+.+|.+.+++++.
T Consensus 39 ~~g~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~ 115 (124)
T 3lyx_A 39 LYGYSKEQAIGQP---VNMLHVPGDTEHITSEVISAVENQGKWTGEIRMLHKDGHIGWIESMCVPIYGENYQMVGALGIN 115 (124)
T ss_dssp HHCCCHHHHTTSB---GGGGSCTTTHHHHHHHHHHHHHHTSCEEEEEEEECTTSCEEEEEEEEEEEECSTTCEEEEEEEE
T ss_pred HhCCCHHHHcCCC---HHHhcCcchhhHHHHHHHHHHHcCCcccceEEEEccCCCEEEEEEEEEEEECCCCCEEEEEEEE
Confidence 3689999999999 6666666555555666778888888889999999999999999999999999999999999999
Q ss_pred eeccccch
Q 043549 81 VEVSKYTE 88 (162)
Q Consensus 81 ~DITe~k~ 88 (162)
+|||++|+
T Consensus 116 ~Dit~~~~ 123 (124)
T 3lyx_A 116 RDITKRKK 123 (124)
T ss_dssp EECSCC--
T ss_pred ecchhhhc
Confidence 99999886
No 21
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=99.32 E-value=2.4e-11 Score=76.92 Aligned_cols=85 Identities=40% Similarity=0.764 Sum_probs=75.6
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCceEEEEEEEecCCceEEEEEEeeeeeCCCCCeEEEEEEe
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGMQ 80 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~~~~v~~~ 80 (162)
++||+.++++|++ +..+.++.........+...+..+..+..+....+++|..+|+.+...|+.+.+|.+.++++++
T Consensus 37 ~~g~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~ 113 (146)
T 2v0u_A 37 LTEYSREEILGRN---CRFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQ 113 (146)
T ss_dssp HHCCCHHHHTTSC---GGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred HHCcCHHHHcCCC---HHHhcCCcCChHHHHHHHHHHhcCCCcceEEEEEecCCcEEEEEEEEEEeECCCCCEEEEEEEE
Confidence 3689999999999 7777777766667777888888888899999999999999999999999999999999999999
Q ss_pred eeccccch
Q 043549 81 VEVSKYTE 88 (162)
Q Consensus 81 ~DITe~k~ 88 (162)
+|||++++
T Consensus 114 ~Dit~~~~ 121 (146)
T 2v0u_A 114 LDGTEHVR 121 (146)
T ss_dssp EEESSCCC
T ss_pred eechHHHH
Confidence 99999998
No 22
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=99.27 E-value=7.7e-11 Score=73.41 Aligned_cols=84 Identities=12% Similarity=0.036 Sum_probs=66.0
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHc-CCceEEEEEEEecCCceEEEEEEeeeeeCCC-CCeEEEEE
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRN-GKSYCGRLLNYKKDGTPFWNLLTVTPIKDDS-GKTIKFIG 78 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~-g~~~~~v~ 78 (162)
++||+++|++|++ +..+.+|++.......+.+.+.. +..+..+++.+++||+.+|+...+.|+.|.. +.+..+++
T Consensus 35 ~~G~~~~el~g~~---~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~~~~~~~~~~~d~~~~~~~~~v~ 111 (121)
T 2kdk_A 35 ILGYLPQELLGTS---CYEYFHQDDHNNLTDKHKAVLQSKEKILTDSYKFRAKDGSFVTLKSQWFSFTNPDTKELEYIVS 111 (121)
T ss_dssp HTCCCTTTSBTSB---TTTTBCSSSHHHHHHHHHHHHTSSSCEEEEEEEEECSSSCEEEEEEEEEEEECCSSSCEEEEEE
T ss_pred HHCCCHHHHcCCc---HHHeeCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEcCCCEEEEEEEEEEEECCCCCeeeEEEE
Confidence 4899999999999 66666676655455555555554 3445788999999999999999999999876 45667899
Q ss_pred Eeeeccccc
Q 043549 79 MQVEVSKYT 87 (162)
Q Consensus 79 ~~~DITe~k 87 (162)
+.+||++.+
T Consensus 112 ~~~~i~~~~ 120 (121)
T 2kdk_A 112 VNTLVLGHS 120 (121)
T ss_dssp EEECCSSCC
T ss_pred EEEeccccC
Confidence 999999865
No 23
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=99.27 E-value=3.2e-12 Score=101.66 Aligned_cols=86 Identities=9% Similarity=0.142 Sum_probs=75.2
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCceEEEEEEEecCCceEEEEEEeeeeeCCCCCeEEEEEEe
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGMQ 80 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~~~~v~~~ 80 (162)
++||+.+|.+|++ .....++++. .....+.+.+..++.+.+|++.+++||+.+|+.+++.|++|.+|+++++++++
T Consensus 550 l~G~s~~e~~g~~---~l~~~~~~~~-~~~~~i~~~l~~g~~~~~E~~~~~~dG~~~~~~~~~~pv~d~~G~v~g~v~i~ 625 (635)
T 4eho_A 550 MLPAGSPSAVHLD---DLAGFFVESN-DFLRNVAELIDHGRGWRGEVLLRGAGNRPLPLAVRADPVTRTEDQSLGFVLIF 625 (635)
T ss_dssp TSCSSCCCCCSSG---GGTTSSSSCT-HHHHHHHHHHHHCCCBCCCCEECCSSSSCEECCCCEEEECSTTSSCCEEEECC
T ss_pred HHCcChHHHcCcc---hhhccCCCCH-HHHHHHHHHHHcCCcEEEEEEEEccCCcEEEEEEEEEEEECCCCCEEEEEEEE
Confidence 6899999999998 6555555444 45667788888899999999999999999999999999999999999999999
Q ss_pred eeccccchhh
Q 043549 81 VEVSKYTEGV 90 (162)
Q Consensus 81 ~DITe~k~~e 90 (162)
+|||++|++|
T Consensus 626 ~DITerK~aE 635 (635)
T 4eho_A 626 SDATDRRTAD 635 (635)
T ss_dssp CCCSSSCCCC
T ss_pred EeCchHhhCC
Confidence 9999999854
No 24
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.25 E-value=2.9e-12 Score=95.57 Aligned_cols=86 Identities=10% Similarity=-0.039 Sum_probs=74.6
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCceEEEEEEEecCCceEEEEEEeeeeeCC-CCCeEEEEEE
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDD-SGKTIKFIGM 79 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~-~g~~~~~v~~ 79 (162)
++||+++|++|++ +..+.+|++.......+++.+..+..+..++++++++|+.+|+...+.|+.|+ .|.+..++++
T Consensus 273 ilGY~~eEl~g~~---~~~~iHpdD~~~~~~~~~~~l~~g~~~~~eyR~~~kdG~~vWv~~~~~~v~~~~~g~~~~iv~~ 349 (361)
T 4f3l_A 273 IIGYLPFEVLGTS---GYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQTHYYITYHQWNSRPEFIVCT 349 (361)
T ss_dssp HHCCCHHHHTTSB---GGGGBCHHHHHHHHHHHHHHHHHSEEECCCEEEECTTSEEEEEEEEEEEEECTTTCCEEEEEEE
T ss_pred hhCcCHHHHcCCC---HHHeECHHHHHHHHHHHHHHHhCCCcceEEEEEEecCCCEEEEEEEEEEEEcCCCCCeeEEEEE
Confidence 4799999999999 77777777666666677777777777778899999999999999999999998 7999999999
Q ss_pred eeeccccchh
Q 043549 80 QVEVSKYTEG 89 (162)
Q Consensus 80 ~~DITe~k~~ 89 (162)
.+|||+++..
T Consensus 350 ~~dITe~~~~ 359 (361)
T 4f3l_A 350 HTVVSYAEVR 359 (361)
T ss_dssp EEECCHHHHH
T ss_pred EEECChhHhh
Confidence 9999998874
No 25
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=99.24 E-value=1.1e-10 Score=70.22 Aligned_cols=84 Identities=26% Similarity=0.380 Sum_probs=69.1
Q ss_pred CCCCCcccccCCC-CCCcccccCCCCCHHHHHHHHHHHHcCCceEEEEEEEecCCceEEEEEEeeeeeCCCCCeEEEEEE
Q 043549 1 MSDPTGKELIGCC-LLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGM 79 (162)
Q Consensus 1 l~G~~~~e~~g~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~~~~v~~ 79 (162)
++||+.++++|++ . ...+.++.........+.+.+..+..+..+....+++|..+|+.+...|+.+.+|.+.+++++
T Consensus 26 ~~g~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~ 103 (110)
T 1byw_A 26 LCGYSRAEVMQRPCT--CDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCFLCLVDVVPVKNEDGAVIMFILN 103 (110)
T ss_dssp HHTCCHHHHTTSBTT--CGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEEEEEEECTTCCEEEEEEE
T ss_pred HhCCCHHHHccCCCc--cccccCCcCCHHHHHHHHHHHhcCCCceEEEEEEcCCCCEEEEEEEEEEeecCCCCEEEEEEE
Confidence 4689999999987 1 244444555555566777788888888889888999999999999999999999999999999
Q ss_pred eeecccc
Q 043549 80 QVEVSKY 86 (162)
Q Consensus 80 ~~DITe~ 86 (162)
.+|||++
T Consensus 104 ~~DiTe~ 110 (110)
T 1byw_A 104 FEVVMEK 110 (110)
T ss_dssp EEEEEEC
T ss_pred EEeccCC
Confidence 9999985
No 26
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.23 E-value=3.7e-11 Score=83.60 Aligned_cols=79 Identities=27% Similarity=0.617 Sum_probs=72.7
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCceEEEEEEEecCCc------eEEEEEEeeeeeCCCCCeE
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGT------PFWNLLTVTPIKDDSGKTI 74 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~------~~~~~~~~~~i~d~~g~~~ 74 (162)
++||+++|++|++ ...+.++.........+++.+..+..|.++++.++++|. .+|+.+++.|+.|.+|.+.
T Consensus 143 ~~G~~~~e~~g~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k~G~~~~dg~~~~~~~~~~pi~d~~g~~~ 219 (227)
T 3ewk_A 143 FSGMAEGELLGQS---PSILDSPLADQETLAAMQEALQAGQPWSGRLLNRRRTGPAPHDAEDYWAEISTTPIHTDGNGLV 219 (227)
T ss_dssp HHTCCTHHHHSSC---GGGGBCTTSCHHHHHHHHHHHHHTCCEECCEEEEEECCSSSSCEEEEEEEEEEEEEECSSSCEE
T ss_pred HhCCCHHHHcCCC---hhhccCCCCCHHHHHHHHHHHHcCCceeEEEEEECCCCCcCcccceEEEEEEEEEEECCCCCEE
Confidence 4799999999999 888888888888888999999999999999999999997 8999999999999999999
Q ss_pred EEEEEeee
Q 043549 75 KFIGMQVE 82 (162)
Q Consensus 75 ~~v~~~~D 82 (162)
+++++.+|
T Consensus 220 ~~v~i~~D 227 (227)
T 3ewk_A 220 GYVQIQHD 227 (227)
T ss_dssp EEEEEEEC
T ss_pred EEEEEecC
Confidence 99999987
No 27
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=99.22 E-value=3.9e-11 Score=74.01 Aligned_cols=83 Identities=11% Similarity=-0.007 Sum_probs=67.9
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCceEEEEEEEecCCceEEEEEEeeeeeCCCCCeEEEEEEe
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGMQ 80 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~~~~v~~~ 80 (162)
++||+++++.|.... +..+.+|++.......+.+.+..+..+..+++..+++|..+|+.....|+.+++|.+.+++++.
T Consensus 36 ~~G~~~~~~~~~~~~-~~~~i~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~~g~~~w~~~~~~~~~~~~g~~~~~~g~~ 114 (118)
T 3icy_A 36 LKTLVSEHAGTTRLN-TLSMIHHDDRHMLSNAYSKLREAKHSLTLVYRIVTPEGKLHWIEDHMRSSFSDDGLFSGIDGIL 114 (118)
T ss_dssp GGGGEEEETTEEEEG-GGGGBCGGGHHHHHHHHHHHHHSCCEEEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred hcCCCHHHccCChhH-HHHHcCHHHHHHHHHHHHHHHhcCCCceEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEE
Confidence 478888888876510 2335566665566667777778888889999999999999999999999999999999999999
Q ss_pred eecc
Q 043549 81 VEVS 84 (162)
Q Consensus 81 ~DIT 84 (162)
+|||
T Consensus 115 ~DIT 118 (118)
T 3icy_A 115 CEVT 118 (118)
T ss_dssp EECC
T ss_pred EecC
Confidence 9998
No 28
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=99.17 E-value=2.3e-11 Score=79.39 Aligned_cols=88 Identities=13% Similarity=0.065 Sum_probs=66.1
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCceEEEEEE---Eec-C-CceEEEEEEeeeeeCCCCCeEE
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLN---YKK-D-GTPFWNLLTVTPIKDDSGKTIK 75 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~---~~~-d-G~~~~~~~~~~~i~d~~g~~~~ 75 (162)
++|++ +++|++ +..+.++.........+.+.+..+.....+... .+. + |...|+.+...|+.+.+|.+.+
T Consensus 50 ~~g~~--~~~G~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pi~~~~g~~~g 124 (158)
T 3k3c_A 50 FSPLL--DTVGQP---AREVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIEG 124 (158)
T ss_dssp HCTTC--CSTTSB---HHHHSGGGGGTTHHHHHHHHHHHCCCEEEEEEEEEEESSSSCEEEEEEEEEEEEEECTTSCEEE
T ss_pred HcCCc--hhcCCc---HHHhCCchhHHHHHHHHHHHHHhCCcccccceeEEeccCCCCcceEEEEEEEEEeECCCCCEEE
Confidence 47888 899999 766666554444556677777777765544322 222 2 6779999999999999999999
Q ss_pred EEEEeeeccccchhhhhh
Q 043549 76 FIGMQVEVSKYTEGVNDK 93 (162)
Q Consensus 76 ~v~~~~DITe~k~~e~e~ 93 (162)
++++++|||++|++|++.
T Consensus 125 ~~~~~~DITe~k~~e~~l 142 (158)
T 3k3c_A 125 VQLIVDDVTSRVRARQAA 142 (158)
T ss_dssp EEEEEEECHHHHHHHHHH
T ss_pred EEEEEEehhHHHHHHHHH
Confidence 999999999999976554
No 29
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.15 E-value=2e-11 Score=91.83 Aligned_cols=85 Identities=11% Similarity=-0.042 Sum_probs=66.6
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCc-eEEEEEEEecCCceEEEEEEeeeeeCC-CCCeEEEEE
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKS-YCGRLLNYKKDGTPFWNLLTVTPIKDD-SGKTIKFIG 78 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~dG~~~~~~~~~~~i~d~-~g~~~~~v~ 78 (162)
++||+++|++|++ +..+++|++.......+.+.+..++. ...+++++++||+++|+...+.++.++ .|.+..+++
T Consensus 300 ilGY~~eEl~g~~---~~~~iHpdD~~~~~~~~~~~l~~~~~~~~~eyR~~~kdG~~vWv~~~~~~~~~~~~g~~~~ivg 376 (387)
T 4f3l_B 300 ILAYLPQELLGTS---CYEYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFITLRSRWFSFMNPWTKEVEYIVS 376 (387)
T ss_dssp HHCCCHHHHTTSB---GGGTBCHHHHHHHHHHHHHHTTCSSCEECCCEEEECTTSCEEEEEEEEEEEEETTTTEEEEEEE
T ss_pred ccCCCHHHHcCCc---HHHeeCHHHHHHHHHHHHHHHhcCCCeeeEEEEEEccCCCEEEEEEEEEEEECCCCCCEEEEEE
Confidence 4799999999999 77777776655555555566655443 457899999999999999999999987 788999999
Q ss_pred Eeeeccccch
Q 043549 79 MQVEVSKYTE 88 (162)
Q Consensus 79 ~~~DITe~k~ 88 (162)
+.+|||++|.
T Consensus 377 ~~~dIT~Rk~ 386 (387)
T 4f3l_B 377 TNTVVLANVL 386 (387)
T ss_dssp EEEECC----
T ss_pred EEEEcchhhc
Confidence 9999999985
No 30
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=99.13 E-value=3.4e-10 Score=72.97 Aligned_cols=79 Identities=33% Similarity=0.613 Sum_probs=68.2
Q ss_pred CCCCCcccccCCCCCCcccccCCCC-----------CHHHHHHHHHHHHcCCceEEEEEEEecCCceEEEEEEeeeeeCC
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPET-----------DKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDD 69 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~-----------~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~ 69 (162)
++||++++++|++ +..+.++.. .......+.+.+..+..+..+....+++|+.+|+.+...|+.+.
T Consensus 60 l~G~~~~el~g~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~~~ 136 (149)
T 3d72_A 60 MTGYSNAEVLGRN---CRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRNAEVQVEVVNFKKNGQRFVNFLTMIPVRDE 136 (149)
T ss_dssp HHCCCHHHHTTSC---GGGGGSTTSCCCTTCCCSSSCHHHHHHHHHHHHHTCCEEEEEEEECTTCCEEEEEEEEEEEECT
T ss_pred HHCcCHHHHcCCC---hhHhCCccccccccccccccChHHHHHHHHHHHCCCceEEEEEEECCCCCEEEEEEEEEEEEcC
Confidence 4799999999999 777766653 55566777788888888999999999999999999999999999
Q ss_pred CCCeEEEEEEeee
Q 043549 70 SGKTIKFIGMQVE 82 (162)
Q Consensus 70 ~g~~~~~v~~~~D 82 (162)
+|.+.+++++.+|
T Consensus 137 ~g~~~~~v~~~~D 149 (149)
T 3d72_A 137 TGEYRYSMGFQCE 149 (149)
T ss_dssp TSSEEEEEEECCC
T ss_pred CCCEEEEEEEEeC
Confidence 9999999998877
No 31
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=99.13 E-value=8.3e-10 Score=67.31 Aligned_cols=79 Identities=14% Similarity=0.162 Sum_probs=59.0
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCceEEE-EEEEecCCceEEEEEEeeeeeCCCCCeEEEEEE
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGR-LLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGM 79 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e-~~~~~~dG~~~~~~~~~~~i~d~~g~~~~~v~~ 79 (162)
++|+++++++|++ +..+. |.........+...+ .++....+ ....+++|..+|+.+...|+.+.+|.+.+++++
T Consensus 35 ~~g~~~~~~~g~~---~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~g~~~~~~~~ 109 (114)
T 3luq_A 35 DYGLGDGDILGMS---HYDIF-PEIGEEWKSVHRRGL-AGEVIRVEEDCFVRADGRTQWLRWEVRPWYEGEGRVGGVVIF 109 (114)
T ss_dssp HTTCCSSCCTTCB---HHHHC-TTCCHHHHHHHHHHH-TTCCEEEEEEEEEC--CCEEEEEEEEEEEECTTSCEEEEEEE
T ss_pred HHCCCHHHHcCCc---HHHHC-CccHHHHHHHHHHHh-cCCcceeeeeEEEcCCCcEEEEEEEEEEeECCCCCEEEEEEE
Confidence 4799999999999 76666 444444444444444 45554444 377889999999999999999999999999999
Q ss_pred eeecc
Q 043549 80 QVEVS 84 (162)
Q Consensus 80 ~~DIT 84 (162)
++|||
T Consensus 110 ~~DIT 114 (114)
T 3luq_A 110 TEDIT 114 (114)
T ss_dssp EEECC
T ss_pred EeeCC
Confidence 99998
No 32
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=99.09 E-value=2.4e-10 Score=77.02 Aligned_cols=87 Identities=13% Similarity=0.078 Sum_probs=64.5
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCceEEEEEEE---ec-C-CceEEEEEEeeeeeCCCCCeEE
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNY---KK-D-GTPFWNLLTVTPIKDDSGKTIK 75 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~---~~-d-G~~~~~~~~~~~i~d~~g~~~~ 75 (162)
++||+ +++|++ +..+.++.........+.+.+..+.....+.... ++ + |...|+.+...|+.+.+|.+.+
T Consensus 70 l~G~~--~~~G~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~pi~~~~g~~~g 144 (185)
T 3kx0_X 70 FSPLL--DTVGQP---AREVYPELEGQQIYEMLDRVYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIEG 144 (185)
T ss_dssp HCCCC--SCTTSB---HHHHCTTSCSSSSHHHHHHHHHHCCCEEEEEEEEC--------CCEEEEEEEEEEECTTSCEEE
T ss_pred HcCCc--cccCCc---HHHHCCchhhhhHHHHHHHHHHcCCcccccceeEEeeccCCCCccEEEEEEEEEEECCCCCEEE
Confidence 47888 899999 7767666554445556677777777765543222 22 2 7789999999999999999999
Q ss_pred EEEEeeeccccchhhhh
Q 043549 76 FIGMQVEVSKYTEGVND 92 (162)
Q Consensus 76 ~v~~~~DITe~k~~e~e 92 (162)
++++++|||++|++|++
T Consensus 145 ~~~~~~DITerk~~e~~ 161 (185)
T 3kx0_X 145 VQLIVDDVTSRVRARQA 161 (185)
T ss_dssp EEEEEEECHHHHTTCC-
T ss_pred EEEEEEeCCHHHHHHHH
Confidence 99999999999997665
No 33
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=99.05 E-value=1.3e-09 Score=68.18 Aligned_cols=83 Identities=27% Similarity=0.403 Sum_probs=68.0
Q ss_pred CCCCCcccccCCCCCCc--ccccCCCCCHHHHHHHHHHHHcCCceEEEEEEEecCCceEEEEEEeeeeeCCCCCeEEEEE
Q 043549 1 MSDPTGKELIGCCLLCS--RFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~~~~v~ 78 (162)
++||+.++++|++ + ..+.++.........+.+.+..+..+..+....+++|..+|+.+...|+.+.+|.+.++++
T Consensus 54 l~g~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~ 130 (138)
T 2l0w_A 54 LCGYSRAEVMQRP---CTCDFLHGPRTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCFLCLVDVVPVKNEDGAVIMFIL 130 (138)
T ss_dssp HHSCCHHHHTTSB---TTCGGGCCTTCCHHHHHHHHHHTTCSSCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEE
T ss_pred HhCCCHHHHcCCC---CcccccCCcccchhHHHHHHHHHhhcCCceeEEEEECCCCCEEEEEEEEEEEeCCCCCEEEEEE
Confidence 3689999999987 3 3444555555556667777777788888888889999999999999999999999999999
Q ss_pred Eeeecccc
Q 043549 79 MQVEVSKY 86 (162)
Q Consensus 79 ~~~DITe~ 86 (162)
+++|||++
T Consensus 131 ~~~Dit~~ 138 (138)
T 2l0w_A 131 NFEVVMEK 138 (138)
T ss_dssp EEEEEEEC
T ss_pred EEEeccCC
Confidence 99999975
No 34
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=99.00 E-value=3.6e-10 Score=74.35 Aligned_cols=85 Identities=15% Similarity=0.067 Sum_probs=59.1
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCceEEE---------EE---EEecCCceEEEEEEeeeeeC
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGR---------LL---NYKKDGTPFWNLLTVTPIKD 68 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e---------~~---~~~~dG~~~~~~~~~~~i~d 68 (162)
++|+++++++|++ +..+.++ ........+.+.+..|...... +. ...++|..+|..+++.|+.|
T Consensus 54 ~~G~~~~eviG~~---~~~~~p~-~~~~~~~~l~~vl~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~Pl~d 129 (152)
T 3mxq_A 54 RVIFDGETMQGKN---ILELFPE-SADYLKRKIDTALVIESSSFSSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHS 129 (152)
T ss_dssp TSSSCHHHHTTSB---HHHHSGG-GHHHHHHHHHHHHHHTSCEEEECCSSSCSSCC----------CCEEEEEEEEEEEC
T ss_pred HHCcCHHHHCCCC---HHHhcCC-hHHHHHHHHHHHHhcCCceeeecccccccccccccCCCCCCCcEEEEEEEEEEEEC
Confidence 5899999999999 7767666 4344455677777766542211 11 12346778899999999999
Q ss_pred CCCCeEEEEEEeeeccccchh
Q 043549 69 DSGKTIKFIGMQVEVSKYTEG 89 (162)
Q Consensus 69 ~~g~~~~~v~~~~DITe~k~~ 89 (162)
++|.+.+++.+++|||+++.+
T Consensus 130 ~~G~v~gv~~ii~DVTe~~~a 150 (152)
T 3mxq_A 130 EDGTIEHVCLCVYDVTIQASQ 150 (152)
T ss_dssp TTSCEEEEEEEEEEEECC---
T ss_pred CCCCEEEEEEEEEECCHHHhc
Confidence 999999999999999999874
No 35
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=98.99 E-value=1.8e-09 Score=67.22 Aligned_cols=75 Identities=15% Similarity=0.147 Sum_probs=55.3
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCceEEEEEEEecCCceEEEEEEeeeeeCCCCCeEEEEEEe
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGMQ 80 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~~~~v~~~ 80 (162)
++||+++|++|++ +..+.++... .......+.+..+..+..+.+.+++||+.+|+.++..|+. +|. +++++
T Consensus 43 l~Gy~~~el~g~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~~v~~~~~~~~--~g~---~~~i~ 113 (117)
T 2r78_A 43 AIGYTRDEFLALD---WGVLSRGVDS-GWAAASLARIVGGEPLREERTVWTRNGDQLTVELSAHLLP--DGK---ILGIA 113 (117)
T ss_dssp HHCCCHHHHTTCB---TTTTTTCSTT-SHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEEEEECT--TSC---EEEEE
T ss_pred HHCcCHHHHcCCC---HHHhCCccch-hHHHHHHHHHHcCCcEEEEEEEEecCCCEEEEEEEEEEec--CCe---EEEEE
Confidence 4799999999998 6655443322 2233445566677778889999999999999999999886 455 67888
Q ss_pred eecc
Q 043549 81 VEVS 84 (162)
Q Consensus 81 ~DIT 84 (162)
+|||
T Consensus 114 ~DIT 117 (117)
T 2r78_A 114 RDVS 117 (117)
T ss_dssp EC--
T ss_pred EeCC
Confidence 9998
No 36
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=98.99 E-value=1.3e-09 Score=68.88 Aligned_cols=79 Identities=18% Similarity=0.192 Sum_probs=55.6
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCc----eEEEEEEEecCCceEEEEEEeeeeeCCCCCeEEE
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKS----YCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKF 76 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~~~~ 76 (162)
++||+++|++|++ +..+.++.........+......+.. ...+...+++||+.+|+.+++.|+.+. ....+
T Consensus 48 l~Gy~~~eliG~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~~~~~~~~~~~~~--~~~~~ 122 (130)
T 1d06_A 48 QFGYAEEEVIGQN---LRILMPEPYRHEHDGYLQRYMATGEKRIIGIDRVVSGQRKDGSTFPMKLAVGEMRSG--GERFF 122 (130)
T ss_dssp HHCCCHHHHTTSB---GGGGSCTTHHHHHHHHHHHHHHHCCCSSTTSCEEEEEECTTSCEEEEEEEEEEEEET--TEEEE
T ss_pred HHCCCHHHHcCCc---HHHHCCchhHHHHHHHHHHHHhcCCccccCCeeEEEEEeCCCCEEEEEEEEEEEEEC--CeEEE
Confidence 4799999999999 77676554332222333333333322 235777889999999999999999763 34568
Q ss_pred EEEeeecc
Q 043549 77 IGMQVEVS 84 (162)
Q Consensus 77 v~~~~DIT 84 (162)
+++++|||
T Consensus 123 ~~~~~DIT 130 (130)
T 1d06_A 123 TGFIRDLT 130 (130)
T ss_dssp EEEEEECC
T ss_pred EEEEEECc
Confidence 99999998
No 37
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=98.97 E-value=1.2e-09 Score=67.85 Aligned_cols=87 Identities=14% Similarity=-0.005 Sum_probs=57.9
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCceEEEEEEEecCCceEEEEEEeeeeeCCCCCeEEEEEEe
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGMQ 80 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~~~~v~~~ 80 (162)
++||+.++++|++ +..+.++.........+......+.. ..+....+++|..+|+.+...|+.. +...++++++
T Consensus 31 ~~g~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~ 104 (126)
T 3mjq_A 31 KLGYTHEELMSMH---ILTITSAGKMAEGEKILAELFAGKKE-SLPLSLEKKEGTSIPAKARIWQGKW--HNEPCLFAII 104 (126)
T ss_dssp HHSCCHHHHHHSB---HHHHHCTTCHHHHHHHHHHHHHTCCS-EEEEEEECTTSCEEEEEEEEEEEES--SSSEEEEEEE
T ss_pred HHCCCHHHHcCCC---HHHHcCchhHHHHHHHHHHHHhCCCc-eeEEEEEccCCCEEEEEEEEEeeeE--CCceEEEEEE
Confidence 3689999999999 76666665544444445555544444 7788888999999999999887755 3356789999
Q ss_pred eeccccchhhhhh
Q 043549 81 VEVSKYTEGVNDK 93 (162)
Q Consensus 81 ~DITe~k~~e~e~ 93 (162)
+|||++|+++.+.
T Consensus 105 ~DITe~k~a~~~~ 117 (126)
T 3mjq_A 105 KDLSKEERASSPP 117 (126)
T ss_dssp EECC---------
T ss_pred EechHHHHhhccc
Confidence 9999999976543
No 38
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=98.86 E-value=3.2e-09 Score=69.08 Aligned_cols=87 Identities=21% Similarity=0.302 Sum_probs=51.7
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCc----eEEEEEEEecCCceEEEEEEeeeeeCCCCCeEEE
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKS----YCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKF 76 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~~~~ 76 (162)
++||+.++++|++ +..+.++.........+......+.. +..+.....++|..+|+.+...|+ +.+|.+ .+
T Consensus 72 l~g~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~g~~-~~ 146 (167)
T 1v9y_A 72 LWGYKREEVIGNN---IDMLIPRDLRPAHPEYIRHNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YY 146 (167)
T ss_dssp HHSCCGGGTTTSB---GGGGSCGGGTTTHHHHHHHHHC----------CEEEEECTTSCEEEEEEEEEEE-EETTEE-EE
T ss_pred HhCCCHHHHcCCC---hhhccCccccchHHHHHHHHhhcCCCcccccceEEEEEcCCCcEEEEEEEEEEE-ecCCCE-EE
Confidence 3689999999999 76666554433333334444333322 455777888999999999999999 445655 48
Q ss_pred EEEeeeccccchhhhh
Q 043549 77 IGMQVEVSKYTEGVND 92 (162)
Q Consensus 77 v~~~~DITe~k~~e~e 92 (162)
+++++|||++++.+++
T Consensus 147 ~~~~~DiT~~~~~e~~ 162 (167)
T 1v9y_A 147 LALVRDASVEMAQKEQ 162 (167)
T ss_dssp EEEEEC----------
T ss_pred EEEEecCcHHHHHHHH
Confidence 9999999999996554
No 39
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=98.80 E-value=5.5e-09 Score=64.13 Aligned_cols=80 Identities=16% Similarity=0.239 Sum_probs=60.1
Q ss_pred CCCCCcccccCCCCCCccc--ccCCCCCHHHHHHHHHHHHcCCceEEEEEEEecCCceEEEEEEeeeeeCCCCCeEEEEE
Q 043549 1 MSDPTGKELIGCCLLCSRF--LQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~~~~v~ 78 (162)
++||++++++|.+ ... +.++++.......+ ..+..+..+..+++...++|..+|+.+...|+.+++|.+.++++
T Consensus 44 ~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~ 119 (125)
T 3eeh_A 44 IWGRSVAKLRENP---HDFLNGIHPEDRELMKDTM-QSLMDGESADVECRVNATEEYQRWVWIQGEPITNDAGETVRVAG 119 (125)
T ss_dssp HHSSCHHHHHHCG---GGGGGGBCHHHHHHHHHHH-HHHHTTCCEEEEEEECGGGTTCEEEEEEEEEEECTTSCEEEEEE
T ss_pred HHCCCHHHHccCc---HHHHHhcCHHHHHHHHHHH-HHHHcCCCccEEEEEEcCCCCEEEEEEecEEEECCCCCEEEEEE
Confidence 3688888888766 321 23333222223333 33667788888999999999999999999999999999999999
Q ss_pred Eeeecc
Q 043549 79 MQVEVS 84 (162)
Q Consensus 79 ~~~DIT 84 (162)
+.+|||
T Consensus 120 ~~~DIT 125 (125)
T 3eeh_A 120 FARDIT 125 (125)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999998
No 40
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=98.73 E-value=5.3e-08 Score=68.17 Aligned_cols=82 Identities=10% Similarity=0.069 Sum_probs=58.3
Q ss_pred CCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCceEEEEEEEecCCceEEEEEEeeeeeCCCCCeEEEEEEee
Q 043549 2 SDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGMQV 81 (162)
Q Consensus 2 ~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~~~~v~~~~ 81 (162)
.||++++++|++ +..+.+. +.....+++.+. ..+..++. .+|. |+.+++.|+.|++|.+.+++++++
T Consensus 67 ~G~~~~eliG~~---~~~~~~~---~~~~~~~~~~~~--~~~~~~~~---~~g~--~~~~~~~Pi~d~~G~~~g~v~~~~ 133 (233)
T 3vol_A 67 PNFDAGRLMGAN---IDVFHKN---PAHQRHLLANLT--GVHKAELN---LGGR--RFSLDVVPVFNDANERLGSAVQWT 133 (233)
T ss_dssp TTCCTTSCTTCB---GGGGSSS---HHHHHHHHHTCC--SCEEEEEE---ETTE--EEEEEEEEEECTTCCEEEEEEEEE
T ss_pred CCCCHHHHcCCC---HHHHcCC---HHHHHHHHHhcc--cceeEEEE---ECCE--EEEEEEEEEECCCCCEEEEEEEEe
Confidence 599999999999 7766542 233333333322 23444442 3553 678899999999999999999999
Q ss_pred eccccchhhhhhhcc
Q 043549 82 EVSKYTEGVNDKALR 96 (162)
Q Consensus 82 DITe~k~~e~e~~~~ 96 (162)
|||++++.|.+.+..
T Consensus 134 DITe~~~~e~ei~~l 148 (233)
T 3vol_A 134 DRTEEHRAEQEVSQL 148 (233)
T ss_dssp ECHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHH
Confidence 999999977654433
No 41
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=98.70 E-value=1.4e-08 Score=62.27 Aligned_cols=74 Identities=14% Similarity=0.104 Sum_probs=54.7
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCceEEEEEEEecCCceEEEEEEeeeeeCCCCCeEEEEEEe
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGMQ 80 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~~~~v~~~ 80 (162)
++||++++++|++ +..+.++..... ++.+..+..+..+....+++|..+|+.+...|+.+.. ...+++++
T Consensus 45 l~G~~~~el~g~~---~~~~~~~~~~~~-----~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~ 114 (118)
T 3olo_A 45 MTEYSREQLLSMN---LQDIDVDFALHD-----WEEIRQKNNYTFKTRYRSQSGRIFLVEMSLTFLEDQE--RRFSCVFV 114 (118)
T ss_dssp HHCCCHHHHTTCB---GGGTBTTGGGSC-----HHHHHHHSEEEEEEEEECTTCCEEEEEEEEEEEEETT--EEEEEEEE
T ss_pred HHCCCHHHHhCCC---hhhcccccCHHH-----HHHHHhcCcEEEEEEEEccCCCEEEEEEEEEEEEECC--ccEEEEEE
Confidence 4799999999999 666654432211 3334455677889999999999999999999987643 34677899
Q ss_pred eecc
Q 043549 81 VEVS 84 (162)
Q Consensus 81 ~DIT 84 (162)
+|||
T Consensus 115 ~DIT 118 (118)
T 3olo_A 115 REKS 118 (118)
T ss_dssp EEC-
T ss_pred EeCC
Confidence 9997
No 42
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=98.58 E-value=8.4e-08 Score=70.81 Aligned_cols=85 Identities=12% Similarity=-0.016 Sum_probs=68.2
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCc-----eEEEEEEEecCCceEEEEEEeeeeeCCC-CCeE
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKS-----YCGRLLNYKKDGTPFWNLLTVTPIKDDS-GKTI 74 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~e~~~~~~dG~~~~~~~~~~~i~d~~-g~~~ 74 (162)
++||+++|++|++ +..+.+|++.......+.+.+..|.. ...+++.+++||+.+|+...+.++.|+. +.+.
T Consensus 176 lLGY~peELiG~s---~~~~vHPdD~~~~~~~~~~~l~~G~~~~~~~~s~~yR~~~kdG~~vWlet~~~~~~np~s~~~~ 252 (339)
T 3rty_A 176 ALGYLPQDLIGRS---IMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQNGCYVLLETEWTSFVNPWSRKLE 252 (339)
T ss_dssp HHCCCHHHHTTSB---GGGGBCGGGHHHHHHHHHHHHHHTTSTTCCCBCCCEEEECTTSCEEEEEEEEEEEECTTTCSEE
T ss_pred ccCCCHHHHcCCc---HHHEECHHHHHHHHHHHHHHHHcCCcccccccceEEEEEccCCCEEEEEEEEEEEECCCCCCee
Confidence 4799999999999 77778887766666667777776654 3568899999999999999999999876 4566
Q ss_pred EEEEEeeeccccch
Q 043549 75 KFIGMQVEVSKYTE 88 (162)
Q Consensus 75 ~~v~~~~DITe~k~ 88 (162)
.++++.+.|+....
T Consensus 253 ~II~~h~vi~~p~~ 266 (339)
T 3rty_A 253 FVVGHHRVFQGPKQ 266 (339)
T ss_dssp EEEEEEEEEECCSS
T ss_pred EEEEEEEECCCCCC
Confidence 78888888887654
No 43
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=98.57 E-value=6.1e-08 Score=61.75 Aligned_cols=79 Identities=13% Similarity=0.033 Sum_probs=52.1
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcC-------CceEEEEEEEecCCceEEEEEEeeeeeCCCCCe
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNG-------KSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKT 73 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~ 73 (162)
++||++++++|++ +..+.++.........+......+ ..+..|+..+++||+.+|+++++.|+.+ +..
T Consensus 39 l~G~~~~el~G~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~rkdG~~~~velsis~i~~--~~~ 113 (129)
T 3mfx_A 39 LLDCPQVSLKGQD---WRNFLTEHHQARYDNLLSHDVQLGTNCGQPVQHPAQETTLICASGKAKDVELSISYIPG--HEP 113 (129)
T ss_dssp HTTSCHHHHTTSB---GGGGBCTTCCGGGGCTTC----------CCSCEEEEEEEEECTTSCEEEEEEEEEEECS--SSC
T ss_pred HHCcCHHHHcCCc---HHHHcChHhHHHHHHHHHHHHhcCcccccccCCCceEEEEEcCCCCEEEEEEEEEEecC--CCc
Confidence 5899999999999 776766654432111111111111 2345789999999999999999999973 333
Q ss_pred EEEEEEeeeccc
Q 043549 74 IKFIGMQVEVSK 85 (162)
Q Consensus 74 ~~~v~~~~DITe 85 (162)
.|+++++|+..
T Consensus 114 -~~v~~~~~~~~ 124 (129)
T 3mfx_A 114 -MFVMVMHDLEH 124 (129)
T ss_dssp -EEEEEEEEC--
T ss_pred -EEEEEEechhh
Confidence 48888999854
No 44
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=98.55 E-value=8.2e-07 Score=58.07 Aligned_cols=85 Identities=14% Similarity=0.220 Sum_probs=60.9
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCceEEEEEEEecC-CceEEEEEEeeeeeCCCCCeEEEEEE
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKD-GTPFWNLLTVTPIKDDSGKTIKFIGM 79 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~d-G~~~~~~~~~~~i~d~~g~~~~~v~~ 79 (162)
++| ..++++|++ +..++++. .......+.+.+..++....+++....+ | .++..+..|++|++|...+.+.+
T Consensus 54 i~g-~~~~~iGr~---v~~~~~~~-~~~~v~~i~~~l~~g~~~~~~~~~~~~~~~--~~v~v~~~Pi~d~~G~~~G~vev 126 (151)
T 2qkp_A 54 VFK-RTPSQVGRN---VELCHPPK-VLDKVKKVFELLRNGQRDKVNMWFQSERLG--KFVYVTYAAVRDQAGDFQGVLEY 126 (151)
T ss_dssp SSC-CCGGGTTSB---GGGSSCHH-HHHHHHHHHHHHHTTSBSEEEEEEEETTTT--EEEEEEEEEEECTTCCEEEEEEE
T ss_pred hcC-CCHHHcCCC---HHHhCCHH-HHHHHHHHHHHHHcCCccEEEEEEecCCCC--eEEEEEEEEEECCCCCEEEEEEE
Confidence 467 567899999 66555422 2223455667777787777766654332 4 45677889999999999999999
Q ss_pred eeeccccchhhhh
Q 043549 80 QVEVSKYTEGVND 92 (162)
Q Consensus 80 ~~DITe~k~~e~e 92 (162)
++|||+.++.+.+
T Consensus 127 ~~Dit~l~~le~~ 139 (151)
T 2qkp_A 127 VQDIKPFFELDSE 139 (151)
T ss_dssp EEECGGGGGGGGC
T ss_pred EEECHHHHhhhhh
Confidence 9999999986544
No 45
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=98.52 E-value=3.3e-07 Score=67.06 Aligned_cols=83 Identities=12% Similarity=0.003 Sum_probs=64.5
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCc---eEEEEEEEecCCceEEEEEEeeeeeCCC-CCeEEE
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKS---YCGRLLNYKKDGTPFWNLLTVTPIKDDS-GKTIKF 76 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~e~~~~~~dG~~~~~~~~~~~i~d~~-g~~~~~ 76 (162)
++||.++|++|++ +..+++|++.......+.+.+..++. ...+++.+++||+++|+...+.++.|+. +++..+
T Consensus 196 lLGY~peELig~s---~~~~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~~~kdG~~vwvet~~~~~~np~s~~~e~I 272 (317)
T 4dj3_A 196 LLGYLPQDLIGTS---ILTYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRFCTQNGEYVILDSSWSSFVNPWSRKVSFI 272 (317)
T ss_dssp HHSCCHHHHTTSB---GGGGBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEEECTTSCEEEEEEEEEEEECSSSCCEEEE
T ss_pred hcCcChHHHcCCC---HHHeECHHHHHHHHHHHHHHHHcCCCccccceEEEEEccCCCEEEEEEEEEEEECCCCCcccEE
Confidence 4799999999999 77777788777666677777776554 3478999999999999999999999875 556666
Q ss_pred EEEeeecccc
Q 043549 77 IGMQVEVSKY 86 (162)
Q Consensus 77 v~~~~DITe~ 86 (162)
++..+-++..
T Consensus 273 I~~h~v~~~p 282 (317)
T 4dj3_A 273 IGRHKVRTSP 282 (317)
T ss_dssp EEEEEECCCC
T ss_pred EEEEEeccCC
Confidence 7766644443
No 46
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=98.44 E-value=7.5e-07 Score=55.28 Aligned_cols=76 Identities=9% Similarity=0.043 Sum_probs=47.0
Q ss_pred CCCCCcccc--cCCCCCCcccccCCCCCHHHHHHHHHHHHcCCceEEEEEEEecCCceEEEEEEeeeeeCCCCCeEEEEE
Q 043549 1 MSDPTGKEL--IGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78 (162)
Q Consensus 1 l~G~~~~e~--~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~~~~v~ 78 (162)
++||+++|+ +|++ ...+.+ ........+ .....+.....+....++||+.+|+.++..++.+ +|. ..+++
T Consensus 49 ~~G~~~~el~g~g~~---~~~~~~--~~~~~~~~~-~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~~-~~~-~~~~~ 120 (126)
T 3bwl_A 49 ELGYDESEVLGRSIW---EFDLMF--DAEDVQTQL-SGFSVDERRKFEGLYERRDGSTMSVEVHLLRFNL-EGE-DRFLA 120 (126)
T ss_dssp HHTCCGGGTTTSBGG---GTBTTC--CHHHHHHHH-HTCCTTCEEEEEEEEECTTSCEEEEEEEEEEEEE-TTE-EEEEE
T ss_pred HhCCCHHHHhhCCCc---hhhccC--CHHHHHHHH-HHHhcCCCcceEEEEEeCCCCEEEEEEEeEEEec-CCc-EEEEE
Confidence 479999999 5666 444443 211111111 1112234455667778999999999988887743 343 46788
Q ss_pred Eeeecc
Q 043549 79 MQVEVS 84 (162)
Q Consensus 79 ~~~DIT 84 (162)
+.+|||
T Consensus 121 ~~~DIT 126 (126)
T 3bwl_A 121 ISRDIT 126 (126)
T ss_dssp EEEEC-
T ss_pred EEEeCC
Confidence 999998
No 47
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=98.41 E-value=8.1e-07 Score=64.75 Aligned_cols=85 Identities=11% Similarity=0.002 Sum_probs=66.4
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCc-eE-EEEEEEecCCceEEEEEEeeeeeCC-CCCeEEEE
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKS-YC-GRLLNYKKDGTPFWNLLTVTPIKDD-SGKTIKFI 77 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~-~e~~~~~~dG~~~~~~~~~~~i~d~-~g~~~~~v 77 (162)
++||.++|++|++ +..+.+|++.......+.+.+..++. .. .+++.+++||+.+|++..+.++.++ .+++..++
T Consensus 187 lLGY~peELig~s---~~~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vwvet~~~~~~np~s~~~e~ii 263 (309)
T 3gdi_A 187 LLGYLPQDLIETP---VLVQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRFRTRNGEYITLDTSWSSFINPWSRKISFII 263 (309)
T ss_dssp HHSCCHHHHTTSB---HHHHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEEEEECTTTCCEEEEE
T ss_pred ccCcCHHHHcCCC---HHHhCCHHHHHHHHHHHHHHHhcCCceeeceEEEEEccCCCEEEEEEEEEEEECCCCCcccEEE
Confidence 4799999999999 77777887766555666666765443 44 5899999999999999999999886 46677888
Q ss_pred EEeeeccccch
Q 043549 78 GMQVEVSKYTE 88 (162)
Q Consensus 78 ~~~~DITe~k~ 88 (162)
++.+-|+.-..
T Consensus 264 ~~h~v~~gp~~ 274 (309)
T 3gdi_A 264 GRHKVRVGPLN 274 (309)
T ss_dssp EEEEEEECCSS
T ss_pred EEEEEccCCCC
Confidence 88887776543
No 48
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=98.40 E-value=3.1e-06 Score=61.96 Aligned_cols=83 Identities=7% Similarity=0.000 Sum_probs=55.6
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCceEEEEEEEecCCceEEEEEEeeeeeCCCCCe-EEEEEE
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKT-IKFIGM 79 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~-~~~v~~ 79 (162)
++||++++++|++ +..+..+ ..........+..+.....+. ..+...|+.+...|+.+.+|.. .+++++
T Consensus 40 l~G~~~~e~~G~~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 109 (349)
T 3a0r_A 40 LFGLKKENVLGRR---LKDLPDF---EEIGSVAESVFENKEPVFLNF----YKFGERYFNIRFSPFRNAKTQLLEGVIIT 109 (349)
T ss_dssp HHSCCSTTTTTCB---STTSTTT---THHHHHHHHHHHHCCCCEEEC----CCBTTBCCEEEEEEECCTTTTSSCEEEEE
T ss_pred HhCCCHHHHcCcC---HHHCcCh---hHHHHHHHHHHhcCCceeecc----cccCceEEEEEEEEEEcCCCceeeEEEEE
Confidence 4799999999999 6655322 223334445555555443321 2223357788899998887765 589999
Q ss_pred eeeccccchhhhhh
Q 043549 80 QVEVSKYTEGVNDK 93 (162)
Q Consensus 80 ~~DITe~k~~e~e~ 93 (162)
++|||++++.+++.
T Consensus 110 ~~DiTe~~~~e~~~ 123 (349)
T 3a0r_A 110 IDDVTELYKYEEER 123 (349)
T ss_dssp EECCSTTTTTTTTT
T ss_pred EEechHHHHHHHHH
Confidence 99999999976543
No 49
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=98.38 E-value=2.9e-07 Score=57.02 Aligned_cols=74 Identities=16% Similarity=0.040 Sum_probs=46.9
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCceEEEEEEEecCCceEEEEEEeeeeeCCCCCe-EEEEEE
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKT-IKFIGM 79 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~-~~~v~~ 79 (162)
++||+++|++|++ +..+.+|++.......+. ..+.....+++.+++||+.+|+..++.++.+..+.. ..+++-
T Consensus 31 ~lGy~~~el~G~~---~~~~ihp~D~~~~~~~~~---~~~~~~~~e~r~~~kdG~~~wve~~~~~v~~~~~~~~r~~~~~ 104 (111)
T 2vlg_A 31 HLGYLQGEMIGSF---LKTFLHEEDQFLVESYFY---NEHHLMPCTFRFIKKDHTIVWVEAAVEIVTTRAERTEREIILK 104 (111)
T ss_dssp HHSCCHHHHTTSB---GGGGBCGGGHHHHHHHHH---CSCCSSCEEEEEECTTSCEEEEEEEEEEC-------CCCEEEE
T ss_pred HhCCCHHHHcCCc---HHHeECHhHHHHHHHHHh---ccCCCccEEEEEEcCCCCEEEEEEEEEEEecccCCceEEEEEE
Confidence 4799999999999 666677765443322221 223334568888999999999999999998865432 235444
Q ss_pred e
Q 043549 80 Q 80 (162)
Q Consensus 80 ~ 80 (162)
+
T Consensus 105 ~ 105 (111)
T 2vlg_A 105 M 105 (111)
T ss_dssp E
T ss_pred E
Confidence 3
No 50
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=98.37 E-value=1.2e-07 Score=58.24 Aligned_cols=78 Identities=10% Similarity=0.081 Sum_probs=52.0
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHH-HHc-CCce---EEEEEEEecCCceEEEEEEeeeeeCCCCCeEE
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDA-VRN-GKSY---CGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIK 75 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~-~~~-~~~~---~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~~~ 75 (162)
++||+++|++|++ +..+.++.... ....+.+. ... +... ..+....++||+.+|+.+++.|+.+..+ ..
T Consensus 31 l~G~~~~el~g~~---~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~v~~~~~~~~~~~~--~~ 104 (114)
T 1ll8_A 31 LLGYSSQDLIGQK---LTQFFLRSDSD-VVEALSEEHMEADGHAAVVFGTVVDIISRSGEKIPVSVWMKRMRQERR--LC 104 (114)
T ss_dssp HHTCCTTTTTTSB---GGGGSSCTTTH-HHHHTTSSTTSSSSCSSCCCSSSEEECCTTCCCEEEECCEECCBSSSS--BE
T ss_pred HhCCCHHHHcCCC---HHHhcCcchhH-HHHHHHHHhhccCCcceeccCcEEEEEecCCCEEEEEEEEEeeccCCc--cE
Confidence 4799999999999 77676664332 22222211 111 1111 2356678899999999999999987543 36
Q ss_pred EEEEeeecc
Q 043549 76 FIGMQVEVS 84 (162)
Q Consensus 76 ~v~~~~DIT 84 (162)
++++++|++
T Consensus 105 ~v~~~~~~~ 113 (114)
T 1ll8_A 105 CVVVLEPVE 113 (114)
T ss_dssp EEEEEEECC
T ss_pred EEEEEeecC
Confidence 788889986
No 51
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=98.33 E-value=6.6e-07 Score=65.53 Aligned_cols=85 Identities=9% Similarity=0.046 Sum_probs=64.8
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcC-Cce-EEEEEEEecCCceEEEEEEeeeeeCC-CCCeEEEE
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNG-KSY-CGRLLNYKKDGTPFWNLLTVTPIKDD-SGKTIKFI 77 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~-~~e~~~~~~dG~~~~~~~~~~~i~d~-~g~~~~~v 77 (162)
++||.++|++|++ +..+++|++.......+.+.+..+ ... ..+++++++||+++|+...+.++.++ .+++..++
T Consensus 198 lLGY~peELig~s---~~~~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vwvet~~~~~~np~s~~~e~II 274 (320)
T 4dj2_A 198 LLGYLPQDLLGAP---VLLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRFCARNGEYVTMDTSWAGFVHPWSRKVAFVL 274 (320)
T ss_dssp HHSCCHHHHTTSB---GGGGBCGGGHHHHHHHHHHHTTSSSCCEECCCEEEECSSSCEEEEECEEEEEECTTTCSEEEEE
T ss_pred cCCcChHHHcCCc---HHHhCCHHHHHHHHHHHHHHHhcCCCcccceEEEEEccCCCEEEEEEEEEEEECCCCCCccEEE
Confidence 4799999999999 777777776555555555665543 344 35899999999999999999999886 46677888
Q ss_pred EEeeeccccch
Q 043549 78 GMQVEVSKYTE 88 (162)
Q Consensus 78 ~~~~DITe~k~ 88 (162)
+..+-|+.-..
T Consensus 275 ~~h~v~~gp~~ 285 (320)
T 4dj2_A 275 GRHKVRTAPLN 285 (320)
T ss_dssp EEEEESSCCSS
T ss_pred EEEEEccCCCC
Confidence 88777776543
No 52
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=98.33 E-value=3.7e-07 Score=56.60 Aligned_cols=75 Identities=12% Similarity=0.037 Sum_probs=53.4
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCceEEEEEEEecCCceEEEEEEeeeeeCCCCCeEEEEEEe
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGMQ 80 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~~~~v~~~ 80 (162)
++|+++++++|++ +..+.++.........+.+.+..+.....++.....+| .|+.+...|+.+ | +++++
T Consensus 44 l~g~~~~e~~G~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~p~~~--g----~v~~~ 112 (118)
T 3fg8_A 44 HVRRSRDELLGRV---VTEVLPETQGSYFDALCRKVLATGREQQTRVDSLYSPG--MTIEVTAAADSG--A----LVVHF 112 (118)
T ss_dssp HHTCCHHHHTTSB---HHHHCGGGTTSHHHHHHHHHHHHCCCEEEEEECSSSTT--CEEEEEEEEETT--E----EEEEE
T ss_pred HhCCCHHHHcCCc---HHHHcCccchHHHHHHHHHHHHcCCceEEEEEEEcCCC--eEEEEEEEEcCC--c----EEEEE
Confidence 4699999999999 77666655444556677788888887776433333355 577777888754 2 78889
Q ss_pred eecccc
Q 043549 81 VEVSKY 86 (162)
Q Consensus 81 ~DITe~ 86 (162)
+|||++
T Consensus 113 ~DITer 118 (118)
T 3fg8_A 113 RDVTAE 118 (118)
T ss_dssp EECSCC
T ss_pred EeccCC
Confidence 999985
No 53
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=98.32 E-value=2.6e-06 Score=63.56 Aligned_cols=84 Identities=14% Similarity=0.247 Sum_probs=61.7
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCceEEEEEEEecCCceEEEEEEeeeeeCCCCCeEEEEEEe
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGMQ 80 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~~~~v~~~ 80 (162)
++ ++.++++|++ +..++++. .......+.+.+..++....+.+.. .+| .++.++..|++|.+|.+.+++.++
T Consensus 270 i~-~~~~e~iGr~---v~~~~p~~-~~~~~~~l~~~l~~g~~~~~~~~~~-~~g--~~v~v~~~PI~d~~G~~~G~v~v~ 341 (369)
T 3cax_A 270 IF-TRTPSVLGRP---VQLCHPPK-SVYVVNKILKAFKEGRKKEATFWLR-LRE--KYVYIKYVPLFNEKGEYIGTLEMT 341 (369)
T ss_dssp SS-CCCGGGTTCB---TTTSSCGG-GHHHHHHHHHHHHHTSCSCEEEEEE-ETT--EEEEEEEEEEECTTSCEEEEEEEE
T ss_pred cc-CChHHHcCCc---HHHHCChh-hHHHHHHHHHHHHcCCceEEEEEEe-eCC--EEEEEEEEEEECCCCCEEEEEEEE
Confidence 45 7888999999 66565432 2233455666777777665555443 456 477888999999999999999999
Q ss_pred eeccccchhhhh
Q 043549 81 VEVSKYTEGVND 92 (162)
Q Consensus 81 ~DITe~k~~e~e 92 (162)
+|||+.++.+.+
T Consensus 342 ~DITe~~~le~~ 353 (369)
T 3cax_A 342 MDIAPYKKIEGE 353 (369)
T ss_dssp EECHHHHTCCSC
T ss_pred EcCHHHHHHHHH
Confidence 999999986544
No 54
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=98.30 E-value=9.1e-06 Score=50.40 Aligned_cols=72 Identities=11% Similarity=0.081 Sum_probs=47.2
Q ss_pred CCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCceEEEEEEEecCCceEEEEEEeeeeeCCCCCeEEEEEEee
Q 043549 2 SDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGMQV 81 (162)
Q Consensus 2 ~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~~~~v~~~~ 81 (162)
.||++++++|++ ...+.+. ......+.+... ..+..++. .+|. ++.+.+.|+.+++|.+.+++++++
T Consensus 50 ~g~~~~~~~G~~---~~~~~~~---~~~~~~~~~~~~--~~~~~~~~---~~~~--~~~~~~~pi~~~~g~~~g~v~~~~ 116 (121)
T 4hi4_A 50 PNFDAGRLMGAN---IDVFHKN---PAHQRHLLANLT--GVHKAELN---LGGR--RFSLDVVPVFNDANARLGSAVQWT 116 (121)
T ss_dssp TTCCGGGCTTCB---GGGGCSS---HHHHHHHHHHCS--SCEEEEEE---ETTE--EEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCCChHHhcCCC---HHHhcCC---HHHHHHHHhCcC--CCcEEEEE---ECCE--EEEEEEEEEECCCCCEEEEEEEEE
Confidence 479999999999 6666532 222222222221 33444432 3454 457789999999999999999999
Q ss_pred ecccc
Q 043549 82 EVSKY 86 (162)
Q Consensus 82 DITe~ 86 (162)
|||++
T Consensus 117 DiTee 121 (121)
T 4hi4_A 117 DRTEE 121 (121)
T ss_dssp ECC--
T ss_pred EecCC
Confidence 99984
No 55
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=98.11 E-value=8.7e-07 Score=54.61 Aligned_cols=74 Identities=16% Similarity=0.170 Sum_probs=47.4
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCceEEEEEEEecCCc-eEEEEEEeeeeeCCCCCeEEEEEE
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGT-PFWNLLTVTPIKDDSGKTIKFIGM 79 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~-~~~~~~~~~~i~d~~g~~~~~v~~ 79 (162)
++||++++++|++ +..+.++................+... ...+|. ..|+.+...|+.+. |...+++++
T Consensus 51 ~~g~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~ 120 (125)
T 3fc7_A 51 RLGADPDTLVGQQ---LSAVMDSEAANQRLEAGKSAVENGTAT------RSEDAVGGRHYHNQYIPVDSH-RKSDTFQLV 120 (125)
T ss_dssp HHTSCHHHHTTSB---GGGSSCHHHHHHHHHHHHHHHHHTSCE------EEEEEETTEEEEEEEEESSTT-TTTTEEEEE
T ss_pred HhCCCHHHHcCcc---HHHhCCHHHHHHHHHHHHHHhcCCCeE------EeEcCCCcEEEEEEEEeEecC-CCeEEEEEE
Confidence 4699999999999 666653221111112223444444432 223444 67999999998765 666789999
Q ss_pred eeecc
Q 043549 80 QVEVS 84 (162)
Q Consensus 80 ~~DIT 84 (162)
++|||
T Consensus 121 ~~DIT 125 (125)
T 3fc7_A 121 SRDIT 125 (125)
T ss_dssp EEECC
T ss_pred EecCC
Confidence 99998
No 56
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.10 E-value=3.9e-06 Score=51.13 Aligned_cols=76 Identities=14% Similarity=0.203 Sum_probs=52.3
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCce-EEEEEEEecCCceEEEEEEeeeeeCCCCCeEEEEEE
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSY-CGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGM 79 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~~~~v~~ 79 (162)
++|++.++++|++ +..+.++... ....+.+.+..+... ..+.... ++|..+|+.+.+.|+.+ +|. .+++.+
T Consensus 39 l~g~~~~~~~g~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~pi~~-~g~-~~~l~~ 110 (115)
T 3b33_A 39 LFSQSAKRIVEQS---LSQLIQHASL--DLALLTQPLQSGQSITDSDVTFV-VDGRPLMLEVTVSPITW-QRQ-LMLLVE 110 (115)
T ss_dssp HTTSCHHHHTTCB---HHHHCSEEEC--CTHHHHHHHHHCCCEEEEEEEEE-ETTEEEEEEEEEEEEEE-TTE-EEEEEE
T ss_pred HhCCCHHHHhCCC---HHHHhCccch--hhHHHHHHHHcCCcccCCceEEe-cCCCEEEEEEEEEEeec-CCc-eEEEEE
Confidence 4799999999999 6655443211 112344455555543 3555555 78999999999999998 775 678899
Q ss_pred eeecc
Q 043549 80 QVEVS 84 (162)
Q Consensus 80 ~~DIT 84 (162)
++||+
T Consensus 111 ~~Di~ 115 (115)
T 3b33_A 111 MRKID 115 (115)
T ss_dssp EEEC-
T ss_pred EEeCC
Confidence 99985
No 57
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=97.76 E-value=0.00011 Score=42.01 Aligned_cols=72 Identities=8% Similarity=-0.006 Sum_probs=48.0
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCceEEEEEEEecCCceEEEEEEeeeeeCCCCC-eEEEEEE
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGK-TIKFIGM 79 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~-~~~~v~~ 79 (162)
++||+.++++|++ +..+ +. .......+.+.+..+..+..+ . .+|...|+.+...|+.+.+|. +.+++++
T Consensus 24 l~g~~~~~~~g~~---~~~~--~~-~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~p~~~~~~~~~~g~v~~ 93 (96)
T 3a0s_A 24 LFGLKKENVLGRR---LKDL--PD-FEEIGSVAESVFENKEPVFLN--F--YKFGERYFNIRFSPFRNAKTQLLEGVIIT 93 (96)
T ss_dssp HHCCCHHHHTTSB---GGGS--TT-CHHHHHHHHHHHHHTCCEEEE--E--EEETTEEEEEEEEEEECTTTCCEEEEEEE
T ss_pred HhCCCHHHhcCCC---HHHC--cc-hHHHHHHHHHHhccCCeEEEE--E--EcCCcEEEEEEEEEeEcCCCCeeeEEEEE
Confidence 4689999999999 6655 22 233444555566556555322 2 234456889999999987665 5788888
Q ss_pred eee
Q 043549 80 QVE 82 (162)
Q Consensus 80 ~~D 82 (162)
++|
T Consensus 94 ~~D 96 (96)
T 3a0s_A 94 IDD 96 (96)
T ss_dssp EEC
T ss_pred ecC
Confidence 876
No 58
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=97.18 E-value=0.0016 Score=41.11 Aligned_cols=70 Identities=11% Similarity=0.012 Sum_probs=45.9
Q ss_pred CCCCCcccccCCCCCCccc-ccCCCCCHHHHHHHHHHHHcCCceEEEEEE-EecCCceEEEEEEeeeeeCCCCCeEEE
Q 043549 1 MSDPTGKELIGCCLLCSRF-LQGPETDKNEVEKIRDAVRNGKSYCGRLLN-YKKDGTPFWNLLTVTPIKDDSGKTIKF 76 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~~dG~~~~~~~~~~~i~d~~g~~~~~ 76 (162)
++||++++++|++ +.. +.+....+.....+.+.+..+. +..+... .+++|.++++. +.+..+++|...++
T Consensus 54 isG~s~eeviGk~---~f~~~~p~~~~~~f~grf~~~~~~G~-l~~~~~yv~~~~~~p~~v~--i~l~~~~~~~~~~i 125 (129)
T 1mzu_A 54 LSGRIPERVIGRN---FFTEVAPCTNIPAFSGRFMDGVTSGT-LDARFDFVFDFQMAPVRVQ--IRMQNAGVPDRYWI 125 (129)
T ss_dssp HHCCCHHHHTTSB---CCCCCCGGGCSTTTHHHHHHHHHTSC-CEEEEEEEEECSSCEEEEE--EEEEECSSTTEEEE
T ss_pred HhCCCHHHHcCCc---hhhhccchhcccHHHHHHHHHHhcCc-eeEEEEEEEcCCCCEEEEE--EEEEEcCCCCEEEE
Confidence 3699999999999 543 4333445566777888888665 5544444 48899866655 45555667765443
No 59
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=97.13 E-value=0.0012 Score=41.59 Aligned_cols=69 Identities=16% Similarity=0.062 Sum_probs=45.6
Q ss_pred CCCCcccccCCCCCCccc-ccCCCCCHHHHHHHHHHHHcCCceEEEEEE-EecCCceEEEEEEeeeeeCCCCCeEEE
Q 043549 2 SDPTGKELIGCCLLCSRF-LQGPETDKNEVEKIRDAVRNGKSYCGRLLN-YKKDGTPFWNLLTVTPIKDDSGKTIKF 76 (162)
Q Consensus 2 ~G~~~~e~~g~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~~dG~~~~~~~~~~~i~d~~g~~~~~ 76 (162)
+||++++++|++ +.. +.+....+.....+.+.+..|. +..+... .+++|.++++.+ .+..+++|...++
T Consensus 50 sG~~~~eviGk~---~f~~~~~~~~~~~f~~rf~~~~~~g~-l~~~~~~v~~~~~~p~~v~i--~l~~~~~~~~~~i 120 (125)
T 1nwz_A 50 TGRDPKQVIGKN---FFKDVAPCTDSPEFYGKFKEGVASGN-LNTMFEYTFDYQMTPTKVKV--HMKKALSGDSYWV 120 (125)
T ss_dssp HCCCHHHHTTSB---CCCCCCGGGCSTTTHHHHHHHHHHTC-CEEEEEEEECTTSCCEEEEE--EEEECSSSSEEEE
T ss_pred hCCCHHHHcCCc---hhhhccchhcccHHHHHHHHHHhcCc-eeEEEEEEEcCCCCEEEEEE--EEEEcCCCCEEEE
Confidence 699999999999 543 4433445566677788777666 5544444 488999666554 4555666765443
No 60
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=97.11 E-value=0.00011 Score=44.17 Aligned_cols=68 Identities=13% Similarity=0.160 Sum_probs=44.4
Q ss_pred CCC---CcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCceEEEEEEEecCCceEEEEEEeeeeeCCCCCeEEEEE
Q 043549 2 SDP---TGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIG 78 (162)
Q Consensus 2 ~G~---~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~~~~v~ 78 (162)
+|| +.++++|++ +..+.++. . +.+.+..+....... ...+| .|+.+...|+.+ +|.+.++++
T Consensus 48 ~g~~~~~~~~~~g~~---~~~~~~~~---~----~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~p~~~-~g~~~g~v~ 112 (118)
T 2w0n_A 48 LNYRKSQDDEKLSTL---SHSWSQVV---D----VSEVLRDGTPRRDEE--ITIKD--RLLLINTVPVRS-NGVIIGAIS 112 (118)
T ss_dssp HCSCTTTTTSSCCCT---TCCCSCTH---H----HHHHHHTTCCCCCCC--EESSS--CEECCCEECCCC-SSCCCCEEE
T ss_pred hCCCccChhhhhccC---cccccCch---h----HHHHhccCceeccEE--EEECC--EEEEEeeceeee-CCEEEEEEE
Confidence 576 788999998 65554432 1 344455544332221 23355 477788889987 788888999
Q ss_pred Eeeecc
Q 043549 79 MQVEVS 84 (162)
Q Consensus 79 ~~~DIT 84 (162)
+++|||
T Consensus 113 ~~~DiT 118 (118)
T 2w0n_A 113 TFRDKT 118 (118)
T ss_dssp CCCCCC
T ss_pred EEEeCC
Confidence 999997
No 61
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=96.91 E-value=0.00026 Score=47.12 Aligned_cols=73 Identities=11% Similarity=0.008 Sum_probs=45.7
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCC--ceEEEEEEEecCCceEEEEEEeeeeeCCCCC----eE
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGK--SYCGRLLNYKKDGTPFWNLLTVTPIKDDSGK----TI 74 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~----~~ 74 (162)
++|++.++++|++ +..+.++.. . .+.+..+. .+..++.. +|.. +.+...|+.+++|. +.
T Consensus 112 llg~~~~~~~g~~---~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~---~g~~--~~~~~~pi~~~~~~~~~~~~ 176 (190)
T 2jhe_A 112 LFGQKLDRLRNHT---AAQLINGFN---F----LRWLESEPQDSHNEHVVI---NGQN--FLMEITPVYLQDENDQHVLT 176 (190)
T ss_dssp HHTSCHHHHTTSB---GGGTSTTCC---H----HHHHHTCCCSCEEEEEEE---TTEE--EEEEEEEETTTTEEEEEEEE
T ss_pred HhCCCHHHhcCcc---HHHHhCCCC---H----HHHHhcCCCCCcceEEEE---CCeE--EEEEEEEEEecCCCCcceEE
Confidence 3688889999999 666655432 1 12333333 23333322 6654 55678899775555 67
Q ss_pred EEEEEeeeccccch
Q 043549 75 KFIGMQVEVSKYTE 88 (162)
Q Consensus 75 ~~v~~~~DITe~k~ 88 (162)
+++.+++|||++++
T Consensus 177 g~v~~~~DiTe~~~ 190 (190)
T 2jhe_A 177 GAVVMLRSTIRMGR 190 (190)
T ss_dssp -HHHHHHHHTTTCC
T ss_pred eEEEEEeccchhcC
Confidence 88888999999864
No 62
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=96.68 E-value=0.0011 Score=41.88 Aligned_cols=80 Identities=11% Similarity=0.109 Sum_probs=56.2
Q ss_pred CCCc--ccccCCCCCCcccccCCCCCH--HHHHHHHHHHHcCCceEEEEEEEecCCceEEEEEEeeeeeCCC-CCeEEEE
Q 043549 3 DPTG--KELIGCCLLCSRFLQGPETDK--NEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDS-GKTIKFI 77 (162)
Q Consensus 3 G~~~--~e~~g~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~-g~~~~~v 77 (162)
+|.+ +|++|+. +-.+.++++.. ..-+...+.+..|.....-++++.++|..+|+......++++. .++..++
T Consensus 30 ~~~~g~qdLlGrs---iy~f~H~~D~~~s~l~~h~~~vl~~Gq~~S~~YRfr~k~g~~V~~qT~sk~f~np~t~e~e~Iv 106 (132)
T 1oj5_A 30 AGRTGWEDLVRKC---IYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGTMLSAHTRCKLCYPQSPDMQPFIM 106 (132)
T ss_dssp TCCSCHHHHHHHH---HHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEECTTSCEEEEEEEEEEECC----CCCEEE
T ss_pred cccccHHHHHHHH---HHHHhCcccchHHHHHHHHHHHHHcCCccccceEEEecCCcEEEEEEEEEEecCCCCCCCCEEE
Confidence 4555 8999999 55566666633 5666777777777777777899999999999999998888864 3445566
Q ss_pred EEeeeccc
Q 043549 78 GMQVEVSK 85 (162)
Q Consensus 78 ~~~~DITe 85 (162)
++..=+.+
T Consensus 107 s~n~v~r~ 114 (132)
T 1oj5_A 107 GIHIIDRE 114 (132)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcC
Confidence 66554444
No 63
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=94.83 E-value=0.0014 Score=47.48 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=28.9
Q ss_pred EEEEEEeeeeeCCCCCeEEEEEEeeeccccchhhhhh
Q 043549 57 FWNLLTVTPIKDDSGKTIKFIGMQVEVSKYTEGVNDK 93 (162)
Q Consensus 57 ~~~~~~~~~i~d~~g~~~~~v~~~~DITe~k~~e~e~ 93 (162)
.++.+...|+.+ +|...+.+.+++|||+.++.|.+.
T Consensus 258 ~~l~v~~~Pi~~-~g~~~G~Vvv~rDITE~~~lE~eL 293 (305)
T 2ykf_A 258 ATVLLRTLPLVV-AGRNVGAAILIRDVTEVKRRDRAL 293 (305)
Confidence 456677889876 577888999999999999976554
No 64
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=95.65 E-value=0.057 Score=39.70 Aligned_cols=81 Identities=9% Similarity=0.050 Sum_probs=47.3
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCCce------------EEEEEEEe----------------c
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGKSY------------CGRLLNYK----------------K 52 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------------~~e~~~~~----------------~ 52 (162)
++||+++|++|++ +..+.+|++.. .+++.+..+..+ .+-.+..+ +
T Consensus 26 ~LGy~~~el~G~s---~~d~ihp~D~~----~f~~~L~~gl~~~~~~~~~~~~~rsffcR~~rr~~~l~s~gy~v~~~~~ 98 (339)
T 3rty_A 26 VLGYPRDMWLGRS---FIDFVHLKDRA----TFASQITTGIPIAESRGSVPKDAKSTFCVMLRRYRGLKSGGFGVIGRPV 98 (339)
T ss_dssp HHCCCTTSSTTSB---GGGGBCHHHHH----HHHHHHHTTSCCC----------CCEEEEEEECCC-------------C
T ss_pred HcCCCHHHHCCCc---HHHhcCHHHHH----HHHHHHhcCCCCCccccCCCCCCceEEEEEEeccCCCCcCCcceecccc
Confidence 3799999999999 77777765433 344555444222 12222211 1
Q ss_pred CCceEEEEEEeeeeeCC---------CCCeEEEEEEeeeccccch
Q 043549 53 DGTPFWNLLTVTPIKDD---------SGKTIKFIGMQVEVSKYTE 88 (162)
Q Consensus 53 dG~~~~~~~~~~~i~d~---------~g~~~~~v~~~~DITe~k~ 88 (162)
++.++|+.....++.++ .|....++.++++++...+
T Consensus 99 ~~~p~~l~~~~~~~~~e~~~~~~~~~~g~~~~lv~~a~~i~s~~~ 143 (339)
T 3rty_A 99 SYEPFRLGLTFREAPEEARPDNYMVSNGTNMLLVICATPIKSSYK 143 (339)
T ss_dssp CEEEEEEEEEEEECCCC----------CCCEEEEEEEEECCCSCS
T ss_pred cceeEEEEEEEeccccccccccccccCCceEEEEEEcccCCcccc
Confidence 22344555555555544 4666778888999986544
No 65
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=89.61 E-value=0.64 Score=34.24 Aligned_cols=31 Identities=3% Similarity=-0.038 Sum_probs=22.9
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHH
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIR 34 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~ 34 (162)
++||+++|++|++ +..+.+|++.......+.
T Consensus 118 ~lGy~~~el~g~~---~~~~ihp~D~~~~~~~l~ 148 (361)
T 4f3l_A 118 LLEHLPSDLVDQS---IFNFIPEGEHSEVYKILS 148 (361)
T ss_dssp HHCCCHHHHTTSB---GGGGSCGGGHHHHHHHHH
T ss_pred hcCCCHHHhcCCc---HHHhcCHHHHHHHHHHhc
Confidence 4799999999999 777777776554444443
No 66
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=84.83 E-value=0.44 Score=35.52 Aligned_cols=27 Identities=15% Similarity=0.062 Sum_probs=20.6
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHH
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEV 30 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~ 30 (162)
++||+++|++|++ +..+.+|++.....
T Consensus 119 ~lG~~~~el~g~~---~~~~ihp~D~~~~~ 145 (387)
T 4f3l_B 119 ILNYSQNDLIGQS---LFDYLHPKDIAKVK 145 (387)
T ss_dssp HHSCCHHHHTTSB---GGGGBCGGGHHHHH
T ss_pred HcCCCHHHHCCCc---HHHhcCCCCHHHHH
Confidence 3799999999999 77777776654443
No 67
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=77.82 E-value=1.3 Score=30.60 Aligned_cols=34 Identities=6% Similarity=-0.019 Sum_probs=0.0
Q ss_pred eEEEEEEeeeeeCCCCCeEEEEEEeeeccccchhh
Q 043549 56 PFWNLLTVTPIKDDSGKTIKFIGMQVEVSKYTEGV 90 (162)
Q Consensus 56 ~~~~~~~~~~i~d~~g~~~~~v~~~~DITe~k~~e 90 (162)
.+++......+. +.|.........+|+|.++..+
T Consensus 4 ~~~~~~~s~gl~-P~g~~~~~~~~~~e~~~~~~~e 37 (247)
T 4fpp_A 4 SHHHHHHSSGLV-PRGSHNQMTETVTETTAPASPE 37 (247)
T ss_dssp -----------------------------------
T ss_pred cccccccccCCC-cCCcHHHHHHHHHHHHHHHHHH
Confidence 334444433332 2455566777788999888744
No 68
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=68.82 E-value=2 Score=31.01 Aligned_cols=28 Identities=4% Similarity=-0.187 Sum_probs=14.6
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHH
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVE 31 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~ 31 (162)
++||+++|++|++ +..+.+|++...+..
T Consensus 48 ~Lg~~~~el~g~s---~~d~iHp~D~~~~~~ 75 (309)
T 3gdi_A 48 IFHCKKDAFSDAK---FVEFLAPHDVSVFHS 75 (309)
T ss_dssp TC-------CCSB---GGGGBCTTTHHHHHH
T ss_pred HcCCCHHHHcCCc---hhhccCHhHHHHHHH
Confidence 5899999999999 666777776554443
No 69
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=62.66 E-value=21 Score=23.43 Aligned_cols=55 Identities=9% Similarity=0.123 Sum_probs=34.7
Q ss_pred HHHHHHHcCCceEEEEEEEecCCceEEEEEEeeeeeCCCCCeEEEEEEeeeccccch
Q 043549 32 KIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGMQVEVSKYTE 88 (162)
Q Consensus 32 ~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~~~~v~~~~DITe~k~ 88 (162)
.+.+.+..++.+..+...-...|. ++-....|+.+.+|++.++++..-++....+
T Consensus 100 ~f~~a~~~~~~~is~~~~~~~~g~--~~i~ia~pi~~~~g~~~Gvl~~~i~l~~l~~ 154 (217)
T 4dah_A 100 FFIKAKETKKTVISDSYSSRITGQ--PIFTICVPVLDSKRNVTDYLVAAIQIDYLKN 154 (217)
T ss_dssp HHHHHHHHCSCEECCCEECTTTCS--EEEEEEEEEECTTSCEEEEEEEEEEHHHHHH
T ss_pred HHHHHHhcCCcEEeceEEcCCCCC--EEEEEEEEEECCCCCEEEEEEEEEcHHHHHH
Confidence 344555545554444333233455 5556678999988999999998777765433
No 70
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=55.35 E-value=32 Score=20.81 Aligned_cols=25 Identities=24% Similarity=0.522 Sum_probs=20.0
Q ss_pred EeeeeeCCCCCeEEEEEEeeecccc
Q 043549 62 TVTPIKDDSGKTIKFIGMQVEVSKY 86 (162)
Q Consensus 62 ~~~~i~d~~g~~~~~v~~~~DITe~ 86 (162)
...|+.+++|++++++.+..++...
T Consensus 104 ~~~PV~~~~g~viGvv~vg~~l~~v 128 (131)
T 1p0z_A 104 GKSPIQDATGKVIGIVSVGYTIEQL 128 (131)
T ss_dssp EEEEEECTTCCEEEEEEEEEEGGGC
T ss_pred EEEeEECCCCCEEEEEEEEEEhHHh
Confidence 3459998889999999988877643
No 71
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=48.45 E-value=1.9 Score=31.32 Aligned_cols=26 Identities=12% Similarity=-0.065 Sum_probs=19.3
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHH
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNE 29 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~ 29 (162)
++||+++|++|++ +..+.+|++...+
T Consensus 59 ~Lg~~~~~l~g~s---~~d~iHp~D~~~f 84 (320)
T 4dj2_A 59 LLRCKRDVFRGAR---FSELLAPQDVGVF 84 (320)
T ss_dssp HHTSCSTTTTTSB---GGGGBCHHHHHHH
T ss_pred HhCcCHHHHcCCc---HHHhcCHHHHHHH
Confidence 3799999999999 6666666554433
No 72
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=47.25 E-value=2.8 Score=30.40 Aligned_cols=28 Identities=11% Similarity=-0.051 Sum_probs=21.1
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHH
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVE 31 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~ 31 (162)
++||+++|++|++ +..+.+|++...+..
T Consensus 59 ~Lg~~~~el~g~s---~~d~ihp~D~~~f~~ 86 (317)
T 4dj3_A 59 ILNSKRGFLKSVH---FVDLLAPQDVRAFYA 86 (317)
T ss_dssp HTTCCHHHHHTSB---GGGGBCGGGHHHHHH
T ss_pred HcCCCHHHHcCCc---hhhhcChhhHHHHHH
Confidence 4799999999999 766777766554443
No 73
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=40.54 E-value=35 Score=21.06 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=19.7
Q ss_pred EeeeeeCCCCCeEEEEEEeeecccc
Q 043549 62 TVTPIKDDSGKTIKFIGMQVEVSKY 86 (162)
Q Consensus 62 ~~~~i~d~~g~~~~~v~~~~DITe~ 86 (162)
...|+.+++|++++++.+..++...
T Consensus 109 ~~~PV~~~~g~viGvv~vg~~~~~~ 133 (142)
T 3by8_A 109 VFTPIYDENHKQIGVVAIGLELSRV 133 (142)
T ss_dssp EEEEEECTTSCEEEEEEEEEEHHHH
T ss_pred EEEeEEcCCCCEEEEEEEeEEHHHH
Confidence 3459998789999999988877543
No 74
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=34.82 E-value=40 Score=24.62 Aligned_cols=54 Identities=13% Similarity=0.102 Sum_probs=29.0
Q ss_pred CCCCCcccccCCCCCCcccccCCCCCHHHHHHHHHHHHcCC---ceEEEEEEEec-CCceEEEEE
Q 043549 1 MSDPTGKELIGCCLLCSRFLQGPETDKNEVEKIRDAVRNGK---SYCGRLLNYKK-DGTPFWNLL 61 (162)
Q Consensus 1 l~G~~~~e~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~e~~~~~~-dG~~~~~~~ 61 (162)
++|+++++++|++ +..++++. ....+.+.+..+. ....++..... +|..||+.+
T Consensus 65 ~lg~~~~~llG~~---l~~ll~~~----~~~~l~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~ 122 (337)
T 2ool_A 65 LLRQPPASLLNVP---IAHYLTAA----SAARLTHALHGGDPAAINPIRLDVVTPDGERAFNGIL 122 (337)
T ss_dssp HHSSCGGGGTTCB---GGGGBCHH----HHHHHHHHHCC----CCCSEEEEEEETTEEEEEEEEE
T ss_pred HHCcCHHHHcCCC---HHHHcCHH----HHHHHHHHHhcCCccccCcEEEEEeccCCCeEEEEEE
Confidence 3689999999999 77666542 3334555443322 11233333333 355566543
No 75
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=28.84 E-value=1.3e+02 Score=19.98 Aligned_cols=54 Identities=11% Similarity=0.233 Sum_probs=33.3
Q ss_pred HHHHHHH--cCCceEEEEEEEecCCceEEEEEEeeeeeCCCCCeEEEEEEeeeccccc
Q 043549 32 KIRDAVR--NGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDSGKTIKFIGMQVEVSKYT 87 (162)
Q Consensus 32 ~~~~~~~--~~~~~~~e~~~~~~dG~~~~~~~~~~~i~d~~g~~~~~v~~~~DITe~k 87 (162)
.+...+. .++.+..+...-...|. |+-....|+.+.+|.+.+++++.-++....
T Consensus 100 ~f~~a~~~~~~~~~is~p~~~~~~g~--~~i~~~~pi~~~~g~~~Gvl~~~i~l~~l~ 155 (254)
T 3lif_A 100 YFRYHRANDDHTLLITGPIQSRTSGV--WVFVVSRRLETTDGKFFGVVVATIESEYFS 155 (254)
T ss_dssp HHHHHHHCCCCCCEEEEEEECTTTCC--EEEEEEEEEECTTCCEEEEEEEEECHHHHH
T ss_pred HHHHHHhCCCCCeEECCceecCCCCc--EEEEEEeeeeCCCCCEeEEEEEEECHHHHH
Confidence 3445555 34544444433233454 455667899998999999988877765433
No 76
>1qey_A MNT-C, protein (regulatory protein MNT); oligomerization, transcriptional control, P22 MNT repressor, gene regulation; NMR {Enterobacteria phage P22} SCOP: h.2.1.1
Probab=22.89 E-value=64 Score=14.43 Aligned_cols=22 Identities=14% Similarity=0.409 Sum_probs=12.9
Q ss_pred hHHHHHHHHHhhHHHHHHHhhh
Q 043549 139 DTTNKLEEKRSSILIVLCLHLL 160 (162)
Q Consensus 139 ~l~~~~~~~~~~~~~~~~~~~~ 160 (162)
|-.+++..+++..+.-..+.-+
T Consensus 2 DdaER~Ad~qse~vKk~vfdtL 23 (31)
T 1qey_A 2 NDAERLADEQSELVKKMVFDTL 23 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666655443
No 77
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...
Probab=21.15 E-value=48 Score=20.70 Aligned_cols=26 Identities=19% Similarity=0.082 Sum_probs=20.5
Q ss_pred EecCCceEEEEEEeeeeeCCCCCeEE
Q 043549 50 YKKDGTPFWNLLTVTPIKDDSGKTIK 75 (162)
Q Consensus 50 ~~~dG~~~~~~~~~~~i~d~~g~~~~ 75 (162)
.++||+.+.+.-....+.+.+|.+.+
T Consensus 81 rR~dG~~i~FddNA~Vlin~~g~p~G 106 (132)
T 1vq8_K 81 RRPDGTRVKFEDNAAVIVDENEDPRG 106 (132)
T ss_dssp ECTTSCEEEESSCEEEEECTTSCBSS
T ss_pred CcCCCcEEEeCCceEEEECCCCCEeE
Confidence 46789988888888888888887653
No 78
>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown function, uncharacterized protein; 1.50A {Vibrio cholerae o1 biovar eltor str}
Probab=20.96 E-value=1.8e+02 Score=18.75 Aligned_cols=29 Identities=24% Similarity=0.343 Sum_probs=20.3
Q ss_pred EEEEEeeeeeCCC-CCeEEEEEEeeecccc
Q 043549 58 WNLLTVTPIKDDS-GKTIKFIGMQVEVSKY 86 (162)
Q Consensus 58 ~~~~~~~~i~d~~-g~~~~~v~~~~DITe~ 86 (162)
++-....|+.+.+ |++.+++++.-++...
T Consensus 118 ~~i~~~~pi~~~~~g~~~Gvl~~~i~~~~l 147 (240)
T 3c8c_A 118 ILVSVATPVKDSATGQFLGSIFYDVSLAEL 147 (240)
T ss_dssp EEEEEEEEEECTTTCCEEEEEEEEECHHHH
T ss_pred EEEEEEEEEEECCCCeEEEEEEEEEEHHHH
Confidence 4445578888865 8999988876665543
Done!