BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043552
(154 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F56|A Chain A, Spinach Plantacyanin
pdb|1F56|B Chain B, Spinach Plantacyanin
pdb|1F56|C Chain C, Spinach Plantacyanin
Length = 91
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Query: 39 WNTGANFD-SWSQQYNYSIGDVLVFKYTEGQHNVYEVTQATYRSCVASSGVIGKYESGND 97
+N G +F+ + ++ ++ GDVLVFKY +GQHNV V Y SC A G Y SG D
Sbjct: 3 YNIGWSFNVNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGAR-TYSSGQD 61
Query: 98 QVTLTEAKKYWFICNVAGHCLGGMRFSIDVK 128
++ LT + Y FIC+ GHC GGM+ +I+ K
Sbjct: 62 RIKLTRGQNY-FICSFPGHCGGGMKIAINAK 91
>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein
Length = 96
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 29 EVYTVGGDEQWNTGANFDSWSQQYNYSIGDVLVFKYTEGQHNVYEVTQATYRSCVASSGV 88
VY VGG W N +SW + + GD+L+F Y HNV V Q + +C +G
Sbjct: 1 AVYVVGGSGGWTF--NTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGA 58
Query: 89 IGKYESGNDQVTLTEAKKYWFICNVAGHCLGGMRFSIDV 127
Y SG DQ+ L + + Y FICN GHC GM+ +++
Sbjct: 59 K-VYTSGRDQIKLPKGQSY-FICNFPGHCQSGMKIAVNA 95
>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS8|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
Length = 109
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 28 SEVYTVGGDEQWNTGANFD--SWSQQYNYSIGDVLVFKYTEGQHNVYEVTQATYRSCVAS 85
+ V+ VG W T +D W+ + +GD L+F Y HNV +V Q ++SC +S
Sbjct: 2 ATVHKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSS 61
Query: 86 SGVIGKYESGNDQVTLTEAKKYWFICNVAGHCLGGMRFSIDV 127
S Y SG D + L ++F+C + GHC G + I V
Sbjct: 62 SPA-ASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKV 102
>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9R|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9U|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
pdb|1X9U|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
Length = 116
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 29 EVYTVGGDEQWNTGAN---FDSWSQQYNYSIGDVLVFKYTEGQHNVYEVTQATYRSCVAS 85
E Y VGGD +W ++ + +W+ + +GD L F + G H+V VT+ + +C
Sbjct: 2 EDYDVGGDMEWKRPSDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNC-KK 60
Query: 86 SGVIGKYESGNDQVTLTEAKKYWFICNVAGHCLGGMRFSIDV 127
I + ++ L ++IC V HC G + SI+V
Sbjct: 61 ENPISHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINV 102
>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0
Length = 138
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 8/108 (7%)
Query: 26 IKSEVYTVGGDEQWNTGAN---FDSWSQQYNYSIGDVLVFKYTEGQHNVYEV-TQATYRS 81
++S V+ VG + W+ ++ + W+ + +GD L F + HNV+E+ T+ ++ +
Sbjct: 1 MQSTVHIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDA 60
Query: 82 C--VASSGVIGKYESGNDQVTLTEAKKYWFICNVAGHCLGGMRFSIDV 127
C V S + + ++ L E ++F+C V HC G + SI+V
Sbjct: 61 CNFVNSDNDVERTSPVIER--LDELGMHYFVCTVGTHCSNGQKLSINV 106
>pdb|3PSP|A Chain A, Crystal Structure Of Pul And Pfu Domain
Length = 425
Score = 30.0 bits (66), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 28 SEVYTVGGDEQWNTGANFDSWSQQYNYSIGDVLVFKYTEGQHNVYEVTQATYRSCVASSG 87
S + ++ G +Q G++ Q G ++V K +G ++ + ++++
Sbjct: 19 SHMASMTGGQQMGRGSSPYEILQSPGRKEGQIVVVKSPQGTIEAHQFSNSSWKKV---GD 75
Query: 88 VIGKYESGNDQVTLTEAKKYWFICNVA-GHCLGGMRFSIDVKENP 131
V+G +GND+ E K Y ++ +V ++ I+V +NP
Sbjct: 76 VVGAGATGNDKKIEFEGKTYDYVFDVDIEDGKPPLKLPINVSDNP 120
>pdb|3PST|A Chain A, Crystal Structure Of Pul And Pfu(Mutate) Domain
Length = 425
Score = 30.0 bits (66), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 28 SEVYTVGGDEQWNTGANFDSWSQQYNYSIGDVLVFKYTEGQHNVYEVTQATYRSCVASSG 87
S + ++ G +Q G++ Q G ++V K +G ++ + ++++
Sbjct: 19 SHMASMTGGQQMGRGSSPYEILQSPGRKEGQIVVVKSPQGTIEAHQFSNSSWKKV---GD 75
Query: 88 VIGKYESGNDQVTLTEAKKYWFICNVA-GHCLGGMRFSIDVKENP 131
V+G +GND+ E K Y ++ +V ++ I+V +NP
Sbjct: 76 VVGAGATGNDKKIEFEGKTYDYVFDVDIEDGKPPLKLPINVSDNP 120
>pdb|1QHQ|A Chain A, Auracyanin, A Blue Copper Protein From The Green
Thermophilic Photosynthetic Bacterium Chloroflexus
Aurantiacus
pdb|1OV8|A Chain A, Auracyanin B Structure In Space Group, P65
pdb|1OV8|B Chain B, Auracyanin B Structure In Space Group, P65
pdb|1OV8|C Chain C, Auracyanin B Structure In Space Group, P65
pdb|1OV8|D Chain D, Auracyanin B Structure In Space Group, P65
Length = 140
Score = 29.6 bits (65), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Query: 58 DVLVFKYTEGQHNVYE--VTQATYRSCVASSGVIGKYESGNDQVTLTEAKKYWFICNVAG 115
DV T Q+N V + +A + ++ ESG+ Y +IC G
Sbjct: 67 DVAAAVNTAAQNNADALFVPPPDTPNALAWTAMLNAGESGSVTFRTPAPGTYLYICTFPG 126
Query: 116 HCLGGMRFSIDVKE 129
H L GM+ ++ V
Sbjct: 127 HYLAGMKGTLTVTP 140
>pdb|4I43|B Chain B, Crystal Structure Of Prp8:aar2 Complex
Length = 1564
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 45 FDSWSQQYNYSIGDVLVFKYTEGQHNVYEVTQATY-RSCVASSGVIGKYESGNDQVTLTE 103
F +W + + I +LV+K+T+G +N+ E+ + +S V +G+ D L
Sbjct: 160 FPNWIKPSDSEIPPLLVYKWTQGINNLSEIWDVSRGQSAVLLETTLGEMAEKIDFTLLNR 219
Query: 104 AKKYWFICNVAGHCLGGMRFSIDVKE 129
+ N+A + I+ K+
Sbjct: 220 LLRLIVDPNIADYITAKNNVVINFKD 245
>pdb|3ZEF|B Chain B, Crystal Structure Of Prp8:aar2 Complex: Second Crystal
Form At 3.1 Angstrom Resolution
pdb|3ZEF|E Chain E, Crystal Structure Of Prp8:aar2 Complex: Second Crystal
Form At 3.1 Angstrom Resolution
Length = 1531
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 45 FDSWSQQYNYSIGDVLVFKYTEGQHNVYEVTQATY-RSCVASSGVIGKYESGNDQVTLTE 103
F +W + + I +LV+K+T+G +N+ E+ + +S V +G+ D L
Sbjct: 127 FPNWIKPSDSEIPPLLVYKWTQGINNLSEIWDVSRGQSAVLLETTLGEMAEKIDFTLLNR 186
Query: 104 AKKYWFICNVAGHCLGGMRFSIDVKE 129
+ N+A + I+ K+
Sbjct: 187 LLRLIVDPNIADYITAKNNVVINFKD 212
>pdb|2DV6|A Chain A, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|B Chain B, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|C Chain C, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|D Chain D, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|E Chain E, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|F Chain F, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
Length = 447
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 68 QHNVYEVTQATYRSCVASSGVIGKYESGNDQVTLTEAKKYWFICNVAGHCLGGMRFSIDV 127
QH+V V Q RS + V GK S ++ ++ + C++AGH GM +I V
Sbjct: 76 QHDVV-VDQYAARSAI----VNGKNASSTFSFVASKVGEFNYYCSIAGHRQAGMEGNIQV 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,772,288
Number of Sequences: 62578
Number of extensions: 198777
Number of successful extensions: 477
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 461
Number of HSP's gapped (non-prelim): 14
length of query: 154
length of database: 14,973,337
effective HSP length: 90
effective length of query: 64
effective length of database: 9,341,317
effective search space: 597844288
effective search space used: 597844288
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)