Query 043552
Match_columns 154
No_of_seqs 118 out of 1002
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 06:10:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043552.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043552hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03148 Blue copper-like prot 100.0 1.8E-42 4E-47 270.3 13.0 112 20-133 12-123 (167)
2 PF02298 Cu_bind_like: Plastoc 100.0 4.9E-32 1.1E-36 190.6 4.0 82 39-121 1-85 (85)
3 PRK02710 plastocyanin; Provisi 98.8 5.2E-08 1.1E-12 72.0 10.8 90 25-128 25-119 (119)
4 PF00127 Copper-bind: Copper b 98.7 1.4E-07 3.1E-12 67.2 8.3 77 50-128 17-99 (99)
5 TIGR02656 cyanin_plasto plasto 98.6 4E-07 8.7E-12 65.0 8.9 89 30-128 2-99 (99)
6 COG3794 PetE Plastocyanin [Ene 98.5 1.1E-06 2.3E-11 66.5 9.9 71 50-129 54-128 (128)
7 TIGR03102 halo_cynanin halocya 98.4 2.2E-06 4.7E-11 63.6 9.4 88 27-128 22-115 (115)
8 TIGR02375 pseudoazurin pseudoa 98.4 1.8E-06 3.9E-11 64.1 8.7 78 50-133 15-92 (116)
9 TIGR02657 amicyanin amicyanin. 97.8 0.00018 3.9E-09 49.6 8.0 71 50-128 11-83 (83)
10 TIGR03095 rusti_cyanin rusticy 97.6 0.00027 5.9E-09 54.3 7.7 74 51-128 53-148 (148)
11 PF06525 SoxE: Sulfocyanin (So 96.4 0.031 6.8E-07 45.1 8.8 78 54-131 90-189 (196)
12 PF13473 Cupredoxin_1: Cupredo 95.9 0.0091 2E-07 42.4 3.4 64 50-127 35-104 (104)
13 TIGR03096 nitroso_cyanin nitro 95.5 0.067 1.4E-06 40.8 6.8 65 43-119 54-124 (135)
14 COG4454 Uncharacterized copper 95.3 0.4 8.6E-06 37.5 10.6 80 49-129 62-158 (158)
15 TIGR03094 sulfo_cyanin sulfocy 95.0 0.21 4.6E-06 40.1 8.6 32 100-131 157-188 (195)
16 KOG3858 Ephrin, ligand for Eph 93.7 0.73 1.6E-05 38.2 9.3 81 52-132 45-164 (233)
17 TIGR02376 Cu_nitrite_red nitri 93.3 0.4 8.7E-06 40.8 7.5 77 51-131 60-148 (311)
18 PRK02888 nitrous-oxide reducta 93.0 0.41 8.8E-06 44.8 7.6 67 51-129 556-634 (635)
19 PLN02354 copper ion binding / 92.6 1.7 3.7E-05 40.0 11.0 73 51-131 59-148 (552)
20 PLN02604 oxidoreductase 91.9 1.8 3.9E-05 39.8 10.3 81 50-131 55-146 (566)
21 PF07732 Cu-oxidase_3: Multico 91.7 0.86 1.9E-05 33.3 6.6 79 51-130 27-116 (117)
22 TIGR02695 azurin azurin. Azuri 91.7 1.7 3.7E-05 32.8 8.2 32 94-126 87-124 (125)
23 PF00116 COX2: Cytochrome C ox 91.1 1.1 2.5E-05 32.9 6.7 66 50-127 46-119 (120)
24 PF00812 Ephrin: Ephrin; Inte 88.7 1.5 3.2E-05 33.8 5.8 34 52-85 24-68 (145)
25 TIGR02866 CoxB cytochrome c ox 86.6 3.5 7.5E-05 32.8 7.1 68 51-130 118-193 (201)
26 PLN00044 multi-copper oxidase- 85.3 9.9 0.00021 35.5 10.3 73 51-131 61-150 (596)
27 PLN02191 L-ascorbate oxidase 85.3 6.4 0.00014 36.4 9.0 77 51-130 55-144 (574)
28 PRK10378 inactive ferrous ion 85.0 6.6 0.00014 34.7 8.6 28 98-130 91-118 (375)
29 PLN02168 copper ion binding / 84.0 14 0.0003 34.1 10.6 77 51-131 58-147 (545)
30 PLN02835 oxidoreductase 83.9 19 0.00041 33.1 11.3 78 51-131 61-150 (539)
31 TIGR03388 ascorbase L-ascorbat 83.5 3.7 8E-05 37.5 6.6 78 51-131 33-123 (541)
32 MTH00047 COX2 cytochrome c oxi 81.9 8.2 0.00018 30.9 7.3 33 98-132 159-194 (194)
33 KOG1263 Multicopper oxidases [ 80.7 27 0.00058 32.5 11.1 79 51-133 60-151 (563)
34 PF02839 CBM_5_12: Carbohydrat 76.6 1.5 3.2E-05 25.9 1.2 18 45-62 1-18 (41)
35 COG1622 CyoA Heme/copper-type 75.0 3.3 7.2E-05 34.5 3.2 32 98-131 180-214 (247)
36 PF07172 GRP: Glycine rich pro 72.0 2.6 5.6E-05 30.2 1.7 6 1-7 1-6 (95)
37 PLN02991 oxidoreductase 69.6 91 0.002 28.8 11.5 78 51-131 60-149 (543)
38 TIGR01480 copper_res_A copper- 66.2 35 0.00076 31.8 8.2 77 51-130 77-163 (587)
39 PLN02792 oxidoreductase 62.2 30 0.00065 31.8 6.9 73 51-131 48-137 (536)
40 TIGR01165 cbiN cobalt transpor 61.8 10 0.00023 27.1 3.1 10 42-51 48-57 (91)
41 PRK10883 FtsI repressor; Provi 58.2 60 0.0013 29.2 8.0 74 51-131 78-167 (471)
42 MTH00140 COX2 cytochrome c oxi 56.9 72 0.0016 25.9 7.7 31 98-130 183-216 (228)
43 TIGR02228 sigpep_I_arch signal 55.9 40 0.00088 26.0 5.8 25 52-76 59-87 (158)
44 TIGR01480 copper_res_A copper- 52.7 50 0.0011 30.8 6.8 86 39-127 488-586 (587)
45 PF06462 Hyd_WA: Propeller; I 50.8 29 0.00063 19.7 3.2 26 97-122 2-27 (32)
46 PRK02898 cobalt transport prot 49.7 17 0.00037 26.4 2.6 11 41-51 47-57 (100)
47 COG5661 Predicted secreted Zn- 48.0 25 0.00055 28.5 3.5 55 94-152 66-122 (210)
48 PRK09723 putative fimbrial-lik 47.9 1.8E+02 0.004 26.2 9.3 14 25-38 24-37 (421)
49 PF02553 CbiN: Cobalt transpor 47.8 24 0.00052 24.3 2.9 11 41-51 45-55 (74)
50 TIGR03389 laccase laccase, pla 46.6 78 0.0017 28.9 6.9 84 52-136 36-129 (539)
51 PTZ00047 cytochrome c oxidase 45.6 35 0.00077 26.8 4.0 31 98-130 116-149 (162)
52 smart00495 ChtBD3 Chitin-bindi 43.7 17 0.00036 21.3 1.5 18 45-62 1-18 (41)
53 cd06555 ASCH_PF0470_like ASC-1 43.4 13 0.00028 27.2 1.2 15 52-66 30-44 (109)
54 MTH00168 COX2 cytochrome c oxi 42.5 41 0.00088 27.4 4.1 31 98-130 183-216 (225)
55 MTH00129 COX2 cytochrome c oxi 42.2 1.1E+02 0.0024 25.0 6.6 31 98-130 183-216 (230)
56 TIGR01433 CyoA cytochrome o ub 41.9 38 0.00082 27.6 3.8 31 98-130 182-215 (226)
57 PLN02792 oxidoreductase 41.6 47 0.001 30.6 4.7 83 53-135 406-511 (536)
58 MTH00154 COX2 cytochrome c oxi 41.5 41 0.00089 27.4 3.9 31 98-130 183-216 (227)
59 MTH00139 COX2 cytochrome c oxi 41.0 42 0.00091 27.2 3.9 31 98-130 183-216 (226)
60 TIGR01432 QOXA cytochrome aa3 40.7 34 0.00073 27.5 3.3 31 98-130 173-206 (217)
61 PF09792 But2: Ubiquitin 3 bin 39.6 1.1E+02 0.0023 23.3 5.8 32 98-132 100-131 (143)
62 PF12961 DUF3850: Domain of Un 39.5 19 0.00041 24.7 1.4 13 51-63 26-38 (72)
63 MTH00098 COX2 cytochrome c oxi 39.4 48 0.001 27.1 4.0 31 98-130 183-216 (227)
64 MTH00038 COX2 cytochrome c oxi 39.3 50 0.0011 26.9 4.1 31 98-130 183-216 (229)
65 MTH00117 COX2 cytochrome c oxi 38.9 47 0.001 27.1 3.9 31 98-130 183-216 (227)
66 PF14326 DUF4384: Domain of un 38.6 22 0.00048 24.0 1.7 15 53-67 2-16 (83)
67 PF05382 Amidase_5: Bacterioph 38.5 99 0.0021 23.7 5.4 35 52-86 74-113 (145)
68 MTH00051 COX2 cytochrome c oxi 37.8 1.2E+02 0.0027 24.8 6.2 31 98-130 187-220 (234)
69 MTH00023 COX2 cytochrome c oxi 37.2 53 0.0012 27.0 4.0 31 98-130 194-227 (240)
70 PRK10965 multicopper oxidase; 36.4 1.6E+02 0.0034 27.0 7.3 76 50-132 77-168 (523)
71 MTH00008 COX2 cytochrome c oxi 34.4 60 0.0013 26.5 3.9 31 98-130 183-216 (228)
72 KOG2315 Predicted translation 33.4 82 0.0018 29.4 4.9 64 49-112 210-278 (566)
73 PF00686 CBM_20: Starch bindin 32.5 76 0.0016 21.7 3.6 38 29-66 17-68 (96)
74 MTH00076 COX2 cytochrome c oxi 30.7 72 0.0016 26.0 3.8 31 98-130 183-216 (228)
75 PRK10861 signal peptidase I; P 30.2 1.4E+02 0.0031 25.8 5.7 15 52-66 124-138 (324)
76 KOG1263 Multicopper oxidases [ 28.9 97 0.0021 28.9 4.7 37 98-134 506-542 (563)
77 MTH00027 COX2 cytochrome c oxi 28.7 91 0.002 26.1 4.1 31 98-130 217-250 (262)
78 TIGR03390 ascorbOXfungal L-asc 28.5 2.2E+02 0.0047 26.1 6.8 82 52-134 41-134 (538)
79 PLN02835 oxidoreductase 28.4 1.1E+02 0.0024 28.2 4.9 38 98-135 482-519 (539)
80 PF02362 B3: B3 DNA binding do 28.0 38 0.00082 22.9 1.5 19 49-67 69-87 (100)
81 PF11604 CusF_Ec: Copper bindi 27.4 39 0.00085 22.4 1.4 21 47-67 36-56 (70)
82 PLN02991 oxidoreductase 26.8 1.1E+02 0.0025 28.2 4.7 39 98-136 481-519 (543)
83 PF10868 DUF2667: Protein of u 26.8 35 0.00077 24.3 1.1 23 1-24 1-23 (90)
84 PF00807 Apidaecin: Apidaecin; 26.5 22 0.00047 19.8 0.0 9 138-146 18-26 (28)
85 PF12791 RsgI_N: Anti-sigma fa 26.3 1.7E+02 0.0036 18.1 4.2 37 94-131 4-40 (56)
86 PLN02354 copper ion binding / 26.0 1.5E+02 0.0032 27.5 5.3 38 98-135 489-526 (552)
87 KOG3416 Predicted nucleic acid 25.9 73 0.0016 24.3 2.7 31 30-63 40-71 (134)
88 PRK10525 cytochrome o ubiquino 25.1 94 0.002 26.8 3.6 29 98-128 194-225 (315)
89 PF09953 DUF2187: Uncharacteri 24.9 41 0.00088 22.1 1.1 12 52-63 2-13 (57)
90 PF10377 ATG11: Autophagy-rela 24.4 52 0.0011 24.6 1.7 18 52-69 41-58 (129)
91 COG3627 PhnJ Uncharacterized e 24.4 43 0.00094 27.9 1.4 25 97-121 257-281 (291)
92 MTH00185 COX2 cytochrome c oxi 24.2 1.2E+02 0.0026 24.8 3.9 30 98-129 183-215 (230)
93 PRK14125 cell division suppres 23.6 38 0.00082 24.4 0.8 9 52-60 39-47 (103)
94 KOG2675 Adenylate cyclase-asso 23.2 53 0.0011 29.9 1.8 13 136-148 237-249 (480)
95 MTH00080 COX2 cytochrome c oxi 23.1 1.3E+02 0.0028 24.7 3.9 31 98-130 186-219 (231)
96 PF08980 DUF1883: Domain of un 23.0 23 0.00049 25.5 -0.5 74 52-128 9-86 (94)
97 cd05808 CBM20_alpha_amylase Al 22.7 1.1E+02 0.0024 20.6 3.0 36 30-65 17-62 (95)
98 PF07731 Cu-oxidase_2: Multico 22.7 46 0.00099 23.8 1.1 32 98-129 105-136 (138)
99 cd05810 CBM20_alpha_MTH Glucan 22.3 91 0.002 21.7 2.6 37 30-66 18-64 (97)
100 COG5569 Uncharacterized conser 22.1 79 0.0017 23.1 2.2 18 49-66 79-96 (108)
101 PF09451 ATG27: Autophagy-rela 21.8 81 0.0018 26.1 2.6 25 26-50 221-245 (268)
102 PF04945 YHS: YHS domain; Int 21.8 70 0.0015 19.2 1.7 23 94-118 11-33 (47)
103 COG4043 Preprotein translocase 21.2 41 0.00089 24.7 0.6 15 50-64 30-44 (111)
104 PF01345 DUF11: Domain of unkn 21.2 69 0.0015 20.8 1.7 22 44-65 27-48 (76)
105 COG1930 CbiN ABC-type cobalt t 20.8 94 0.002 22.4 2.3 9 42-50 46-54 (97)
106 COG1188 Ribosome-associated he 20.8 1.1E+02 0.0023 22.2 2.7 18 50-67 45-62 (100)
No 1
>PLN03148 Blue copper-like protein; Provisional
Probab=100.00 E-value=1.8e-42 Score=270.25 Aligned_cols=112 Identities=33% Similarity=0.750 Sum_probs=102.6
Q ss_pred HHhhcccceeEEEecCCCCCCCCCCCccccCCceeEeCCEEEEEEcCCcccEEEECccccccccCCCCcccccccCcceE
Q 043552 20 YLFFTGIKSEVYTVGGDEQWNTGANFDSWSQQYNYSIGDVLVFKYTEGQHNVYEVTQATYRSCVASSGVIGKYESGNDQV 99 (154)
Q Consensus 20 ~~~~~~a~a~~~~VGg~~GW~~~~~Y~~Was~~~f~vGDtLvF~y~~~~HsV~~V~~~~y~~C~~~~~~~~~~~~G~~~v 99 (154)
+++...+.|++|+|||+.||+.+.+|++|+++++|++||+|+|+|+++.|||+||++++|+.|+.++ ++..+++|++.|
T Consensus 12 ~~~~~~~~a~~~~VGd~~GW~~~~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~-pi~~~tsG~d~v 90 (167)
T PLN03148 12 LFSASATTATDHIVGANKGWNPGINYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEG-AAGNWTSGKDFI 90 (167)
T ss_pred HHhhhhccceEEEeCCCCCcCCCCChhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCC-CcceecCCCcEE
Confidence 3444677899999999999999889999999999999999999999999999999999999999986 567899999999
Q ss_pred EccCCceEEEEcCCCCCCCCCCeEEEEeeCCCCC
Q 043552 100 TLTEAKKYWFICNVAGHCLGGMRFSIDVKENPTL 133 (154)
Q Consensus 100 ~l~~~G~~YFic~v~~HC~~GmKl~I~V~~~~~~ 133 (154)
+|+++|++||||+ .+||++||||+|+|.+.++|
T Consensus 91 ~L~~~G~~YFIcg-~ghC~~GmKl~I~V~~~~~p 123 (167)
T PLN03148 91 PLNKAKRYYFICG-NGQCFNGMKVTILVHPLPPP 123 (167)
T ss_pred EecCCccEEEEcC-CCccccCCEEEEEEcCCCCC
Confidence 9999999999999 69999999999999865444
No 2
>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.
Probab=99.97 E-value=4.9e-32 Score=190.63 Aligned_cols=82 Identities=45% Similarity=0.922 Sum_probs=67.5
Q ss_pred CCCCC---CCccccCCceeEeCCEEEEEEcCCcccEEEECccccccccCCCCcccccccCcceEEccCCceEEEEcCCCC
Q 043552 39 WNTGA---NFDSWSQQYNYSIGDVLVFKYTEGQHNVYEVTQATYRSCVASSGVIGKYESGNDQVTLTEAKKYWFICNVAG 115 (154)
Q Consensus 39 W~~~~---~Y~~Was~~~f~vGDtLvF~y~~~~HsV~~V~~~~y~~C~~~~~~~~~~~~G~~~v~l~~~G~~YFic~v~~ 115 (154)
|+++. +|++||++++|++||+|+|+|+++.|+|+||++++|+.|+.++ ++..+++|++.|+|+++|++||||++++
T Consensus 1 W~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~-~~~~~~~G~~~v~L~~~G~~YFic~~~~ 79 (85)
T PF02298_consen 1 WTIPTNASNYTDWASGKTFRVGDTLVFNYDSGQHSVVEVSKADYDSCNSSN-PISTYSTGNDTVTLTKPGPHYFICGVPG 79 (85)
T ss_dssp SSSSSSTTHHHHHHCTS-BETTEEEEEE--TTTB-EEEESHHHHHHT--ST-TSEEE-SSEEEEEE-SSEEEEEE--STT
T ss_pred CccCCCccchhHhhcCCcEeCCCEEEEEecCCCCeEEecChhhCccCCCCC-ceecccCCCEEEEeCCCcCeEEEeCCCC
Confidence 77776 9999999999999999999999999999999999999999987 5678899999999999999999999999
Q ss_pred CCCCCC
Q 043552 116 HCLGGM 121 (154)
Q Consensus 116 HC~~Gm 121 (154)
||++||
T Consensus 80 HC~~Gq 85 (85)
T PF02298_consen 80 HCQKGQ 85 (85)
T ss_dssp TTTTT-
T ss_pred cccccC
Confidence 999998
No 3
>PRK02710 plastocyanin; Provisional
Probab=98.84 E-value=5.2e-08 Score=71.97 Aligned_cols=90 Identities=20% Similarity=0.282 Sum_probs=59.1
Q ss_pred ccceeE--EEecCCCCC-CCCCCCccccCCceeEeCCEEEEEEc-CCcccEEEECccccccccCCCCcccccccCc-ceE
Q 043552 25 GIKSEV--YTVGGDEQW-NTGANFDSWSQQYNYSIGDVLVFKYT-EGQHNVYEVTQATYRSCVASSGVIGKYESGN-DQV 99 (154)
Q Consensus 25 ~a~a~~--~~VGg~~GW-~~~~~Y~~Was~~~f~vGDtLvF~y~-~~~HsV~~V~~~~y~~C~~~~~~~~~~~~G~-~~v 99 (154)
.+.+++ +.+|.++|+ .+. ++..++++||+|.|... ...|+++- +. .+....++ + ....|. ..+
T Consensus 25 ~a~a~~~~V~~~~~~~~~~F~------P~~i~v~~Gd~V~~~N~~~~~H~v~~-~~--~~~~~~~~--~-~~~pg~t~~~ 92 (119)
T PRK02710 25 SASAETVEVKMGSDAGMLAFE------PSTLTIKAGDTVKWVNNKLAPHNAVF-DG--AKELSHKD--L-AFAPGESWEE 92 (119)
T ss_pred ccccceEEEEEccCCCeeEEe------CCEEEEcCCCEEEEEECCCCCceEEe-cC--Cccccccc--c-ccCCCCEEEE
Confidence 344544 446655443 222 35789999999999875 45899853 21 11111111 1 123453 478
Q ss_pred EccCCceEEEEcCCCCCCCCCCeEEEEee
Q 043552 100 TLTEAKKYWFICNVAGHCLGGMRFSIDVK 128 (154)
Q Consensus 100 ~l~~~G~~YFic~v~~HC~~GmKl~I~V~ 128 (154)
+++.+|.|-|+|+ .|=+.||+..|+|.
T Consensus 93 tF~~~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 93 TFSEAGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred EecCCEEEEEEcC--CCccCCcEEEEEEC
Confidence 8999999999999 89999999999984
No 4
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.68 E-value=1.4e-07 Score=67.17 Aligned_cols=77 Identities=23% Similarity=0.268 Sum_probs=54.6
Q ss_pred CCceeEeCCEEEEEEc-CCcccEEEECccc--cccccCCCC--cccccccCcc-eEEccCCceEEEEcCCCCCCCCCCeE
Q 043552 50 QQYNYSIGDVLVFKYT-EGQHNVYEVTQAT--YRSCVASSG--VIGKYESGND-QVTLTEAKKYWFICNVAGHCLGGMRF 123 (154)
Q Consensus 50 s~~~f~vGDtLvF~y~-~~~HsV~~V~~~~--y~~C~~~~~--~~~~~~~G~~-~v~l~~~G~~YFic~v~~HC~~GmKl 123 (154)
+..++++||+|.|.+. ...|+++...... -..+..... .......|.+ .++++++|.|.|+|. + |...||+.
T Consensus 17 ~~i~V~~G~tV~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~~~G~y~y~C~-P-H~~~GM~G 94 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFTKPGTYEYYCT-P-HYEAGMVG 94 (99)
T ss_dssp SEEEEETTEEEEEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEESSEEEEEEET-T-TGGTTSEE
T ss_pred CEEEECCCCEEEEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeCCCeEEEEEcC-C-CcccCCEE
Confidence 4789999999999995 6699998875220 111211110 0012334544 788889999999999 7 99999999
Q ss_pred EEEee
Q 043552 124 SIDVK 128 (154)
Q Consensus 124 ~I~V~ 128 (154)
.|.|.
T Consensus 95 ~i~V~ 99 (99)
T PF00127_consen 95 TIIVE 99 (99)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99985
No 5
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.60 E-value=4e-07 Score=64.97 Aligned_cols=89 Identities=22% Similarity=0.269 Sum_probs=57.8
Q ss_pred EEEecCCCC-CCCCCCCccccCCceeEeCCEEEEEEcC-CcccEEEECccccc------cccCCCCcccccccCcc-eEE
Q 043552 30 VYTVGGDEQ-WNTGANFDSWSQQYNYSIGDVLVFKYTE-GQHNVYEVTQATYR------SCVASSGVIGKYESGND-QVT 100 (154)
Q Consensus 30 ~~~VGg~~G-W~~~~~Y~~Was~~~f~vGDtLvF~y~~-~~HsV~~V~~~~y~------~C~~~~~~~~~~~~G~~-~v~ 100 (154)
+..+|.++| -.+.+ +..++++||+|+|..+. ..|+++..+. ... ........ .....|.+ .++
T Consensus 2 ~v~~g~~~g~~~F~P------~~i~v~~G~~V~~~N~~~~~H~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~pG~t~~~t 73 (99)
T TIGR02656 2 TVKMGADKGALVFEP------AKISIAAGDTVEWVNNKGGPHNVVFDED-AVPAGVKELAKSLSHKD-LLNSPGESYEVT 73 (99)
T ss_pred EEEEecCCCceeEeC------CEEEECCCCEEEEEECCCCCceEEECCC-CCccchhhhcccccccc-cccCCCCEEEEE
Confidence 455675433 33332 47899999999999764 5899865322 110 01110000 01234544 788
Q ss_pred ccCCceEEEEcCCCCCCCCCCeEEEEee
Q 043552 101 LTEAKKYWFICNVAGHCLGGMRFSIDVK 128 (154)
Q Consensus 101 l~~~G~~YFic~v~~HC~~GmKl~I~V~ 128 (154)
++.+|+|-|+|+ +|++.||+..|.|.
T Consensus 74 F~~~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 74 FSTPGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred eCCCEEEEEEcC--CccccCCEEEEEEC
Confidence 889999999999 89999999999984
No 6
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=98.53 E-value=1.1e-06 Score=66.46 Aligned_cols=71 Identities=27% Similarity=0.349 Sum_probs=53.9
Q ss_pred CCceeEeCCEEEEEEcCC-cccEEEECccccccccCCCCcccccccC--c-ceEEccCCceEEEEcCCCCCCCCCCeEEE
Q 043552 50 QQYNYSIGDVLVFKYTEG-QHNVYEVTQATYRSCVASSGVIGKYESG--N-DQVTLTEAKKYWFICNVAGHCLGGMRFSI 125 (154)
Q Consensus 50 s~~~f~vGDtLvF~y~~~-~HsV~~V~~~~y~~C~~~~~~~~~~~~G--~-~~v~l~~~G~~YFic~v~~HC~~GmKl~I 125 (154)
+..++++||++.|.+... .|||.-.... .+- + ...+..+ . .+.+++++|.|.|+|. .|=..|||..|
T Consensus 54 A~v~v~pGDTVtw~~~d~~~Hnv~~~~~~-----~~~-g-~~~~~~~~~~s~~~Tfe~~G~Y~Y~C~--PH~~~gM~G~I 124 (128)
T COG3794 54 AEVTVKPGDTVTWVNTDSVGHNVTAVGGM-----DPE-G-SGTLKAGINESFTHTFETPGEYTYYCT--PHPGMGMKGKI 124 (128)
T ss_pred cEEEECCCCEEEEEECCCCCceEEEeCCC-----Ccc-c-ccccccCCCcceEEEecccceEEEEec--cCCCCCcEEEE
Confidence 589999999999999987 9999776443 110 0 1122222 2 3788999999999999 79999999999
Q ss_pred EeeC
Q 043552 126 DVKE 129 (154)
Q Consensus 126 ~V~~ 129 (154)
.|.+
T Consensus 125 vV~~ 128 (128)
T COG3794 125 VVGE 128 (128)
T ss_pred EeCC
Confidence 9963
No 7
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=98.44 E-value=2.2e-06 Score=63.56 Aligned_cols=88 Identities=22% Similarity=0.319 Sum_probs=60.4
Q ss_pred ceeEEEec--CCCC-CCCCCCCccccCCceeEeCCEEEEEEcC--CcccEEEECccccccccCCCCcccccccC-cceEE
Q 043552 27 KSEVYTVG--GDEQ-WNTGANFDSWSQQYNYSIGDVLVFKYTE--GQHNVYEVTQATYRSCVASSGVIGKYESG-NDQVT 100 (154)
Q Consensus 27 ~a~~~~VG--g~~G-W~~~~~Y~~Was~~~f~vGDtLvF~y~~--~~HsV~~V~~~~y~~C~~~~~~~~~~~~G-~~~v~ 100 (154)
...++.|| ++.| ..+.+ +..++++||+|+|.++. ..|+|.--....|+. +.. ....| ...++
T Consensus 22 ~~~~v~~G~~~~~g~~~F~P------~~ltV~~GdTVtw~~~~d~~~HnV~s~~~~~f~s-----~~~-~~~~G~t~s~T 89 (115)
T TIGR03102 22 DEVTVDVGAEANGGGFAFDP------PAIRVDPGTTVVWEWTGEGGGHNVVSDGDGDLDE-----SER-VSEEGTTYEHT 89 (115)
T ss_pred ceEEEEecccCCCCceeEeC------CEEEECCCCEEEEEECCCCCCEEEEECCCCCccc-----ccc-ccCCCCEEEEE
Confidence 45668888 3322 33332 46899999999999864 589996422223331 111 12334 34899
Q ss_pred ccCCceEEEEcCCCCCCCCCCeEEEEee
Q 043552 101 LTEAKKYWFICNVAGHCLGGMRFSIDVK 128 (154)
Q Consensus 101 l~~~G~~YFic~v~~HC~~GmKl~I~V~ 128 (154)
++++|.|-|+|. .|=..|||..|.|.
T Consensus 90 f~~~G~Y~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 90 FEEPGIYLYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred ecCCcEEEEEcc--CCCCCCCEEEEEEC
Confidence 999999999999 69888999999984
No 8
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=98.42 E-value=1.8e-06 Score=64.06 Aligned_cols=78 Identities=24% Similarity=0.240 Sum_probs=55.5
Q ss_pred CCceeEeCCEEEEEEcCCcccEEEECccccccccCCCCcccccccCcceEEccCCceEEEEcCCCCCCCCCCeEEEEeeC
Q 043552 50 QQYNYSIGDVLVFKYTEGQHNVYEVTQATYRSCVASSGVIGKYESGNDQVTLTEAKKYWFICNVAGHCLGGMRFSIDVKE 129 (154)
Q Consensus 50 s~~~f~vGDtLvF~y~~~~HsV~~V~~~~y~~C~~~~~~~~~~~~G~~~v~l~~~G~~YFic~v~~HC~~GmKl~I~V~~ 129 (154)
+..++++||+|+|.+....|+|.......-+. .+ .+..-.+....++++++|.|-|+|. .|=..||+..|+|..
T Consensus 15 ~~v~V~~GdTV~f~n~d~~Hnv~~~~~~~p~g---~~-~~~s~~g~~~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~ 88 (116)
T TIGR02375 15 AYIRAAPGDTVTFVPTDKGHNVETIKGMIPEG---AE-AFKSKINEEYTVTVTEEGVYGVKCT--PHYGMGMVALIQVGD 88 (116)
T ss_pred CEEEECCCCEEEEEECCCCeeEEEccCCCcCC---cc-cccCCCCCEEEEEeCCCEEEEEEcC--CCccCCCEEEEEECC
Confidence 47899999999999987789986532211100 00 1111112233789999999999999 899999999999988
Q ss_pred CCCC
Q 043552 130 NPTL 133 (154)
Q Consensus 130 ~~~~ 133 (154)
+++.
T Consensus 89 ~~~n 92 (116)
T TIGR02375 89 PPAN 92 (116)
T ss_pred CCcC
Confidence 6443
No 9
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.80 E-value=0.00018 Score=49.61 Aligned_cols=71 Identities=23% Similarity=0.280 Sum_probs=48.3
Q ss_pred CCceeEeCCEEEEEEcCC-cccEEEECccccccccCCCCcccccccCcc-eEEccCCceEEEEcCCCCCCCCCCeEEEEe
Q 043552 50 QQYNYSIGDVLVFKYTEG-QHNVYEVTQATYRSCVASSGVIGKYESGND-QVTLTEAKKYWFICNVAGHCLGGMRFSIDV 127 (154)
Q Consensus 50 s~~~f~vGDtLvF~y~~~-~HsV~~V~~~~y~~C~~~~~~~~~~~~G~~-~v~l~~~G~~YFic~v~~HC~~GmKl~I~V 127 (154)
+..++++||+|.|..... .|||...+.. ...=.... . ....|.+ .++++++|+|-|.|.... +||..|.|
T Consensus 11 ~~i~v~~GdtVt~~N~d~~~Hnv~~~~g~-~~~~~~~~-~--~~~~g~~~~~tf~~~G~y~y~C~~Hp----~M~G~v~V 82 (83)
T TIGR02657 11 PELHVKVGDTVTWINREAMPHNVHFVAGV-LGEAALKG-P--MMKKEQAYSLTFTEAGTYDYHCTPHP----FMRGKVVV 82 (83)
T ss_pred CEEEECCCCEEEEEECCCCCccEEecCCC-Cccccccc-c--ccCCCCEEEEECCCCEEEEEEcCCCC----CCeEEEEE
Confidence 468899999999998854 8999654321 11100111 1 1233443 789999999999999744 59999988
Q ss_pred e
Q 043552 128 K 128 (154)
Q Consensus 128 ~ 128 (154)
.
T Consensus 83 ~ 83 (83)
T TIGR02657 83 E 83 (83)
T ss_pred C
Confidence 4
No 10
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=97.64 E-value=0.00027 Score=54.28 Aligned_cols=74 Identities=24% Similarity=0.343 Sum_probs=50.3
Q ss_pred CceeEeCCEEEEEEcCC----cccEEEECcc-ccc------------cccCCCCcccccccC-----cceEEccCCceEE
Q 043552 51 QYNYSIGDVLVFKYTEG----QHNVYEVTQA-TYR------------SCVASSGVIGKYESG-----NDQVTLTEAKKYW 108 (154)
Q Consensus 51 ~~~f~vGDtLvF~y~~~----~HsV~~V~~~-~y~------------~C~~~~~~~~~~~~G-----~~~v~l~~~G~~Y 108 (154)
.++++.||+++|...+. .|........ .+. .|... ..-.+| +.+++++++|+||
T Consensus 53 ~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~----p~~~~g~~~~~~~tf~f~~aGtyw 128 (148)
T TIGR03095 53 TIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFL----PPPKSGKFGYTDFTYHFSTAGTYW 128 (148)
T ss_pred EEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCccc----CCCCCCccceeEEEEECCCCeEEE
Confidence 46689999999998864 5666554321 110 12111 011123 3477888999999
Q ss_pred EEcCCCCCCCCCCeEEEEee
Q 043552 109 FICNVAGHCLGGMRFSIDVK 128 (154)
Q Consensus 109 Fic~v~~HC~~GmKl~I~V~ 128 (154)
|.|..++|=+.||...|.|.
T Consensus 129 yhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 129 YLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEcCChhHHHCCCEEEEEEC
Confidence 99999999999999999874
No 11
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=96.36 E-value=0.031 Score=45.10 Aligned_cols=78 Identities=27% Similarity=0.374 Sum_probs=49.5
Q ss_pred eEeCCEEEEEEcCC---cccEEEECc-cccccccC--CCCccc-------------ccccCcce--EEcc-CCceEEEEc
Q 043552 54 YSIGDVLVFKYTEG---QHNVYEVTQ-ATYRSCVA--SSGVIG-------------KYESGNDQ--VTLT-EAKKYWFIC 111 (154)
Q Consensus 54 f~vGDtLvF~y~~~---~HsV~~V~~-~~y~~C~~--~~~~~~-------------~~~~G~~~--v~l~-~~G~~YFic 111 (154)
+-+|-++.|+|.+. .|++..|.. ..+..+.. .++.+- ...+|... +..+ .+|.||+.|
T Consensus 90 VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l~aG~YwlvC 169 (196)
T PF06525_consen 90 VPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDLPAGYYWLVC 169 (196)
T ss_pred EcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccCCCceEEEEc
Confidence 34788888888764 799888732 22233321 111110 01133332 2223 689999999
Q ss_pred CCCCCCCCCCeEEEEeeCCC
Q 043552 112 NVAGHCLGGMRFSIDVKENP 131 (154)
Q Consensus 112 ~v~~HC~~GmKl~I~V~~~~ 131 (154)
+.++|=+.||-..+.|.+.-
T Consensus 170 ~ipGHA~sGMw~~LiVs~~v 189 (196)
T PF06525_consen 170 GIPGHAESGMWGVLIVSSNV 189 (196)
T ss_pred cCCChhhcCCEEEEEEecCc
Confidence 99999999999999998754
No 12
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=95.91 E-value=0.0091 Score=42.41 Aligned_cols=64 Identities=19% Similarity=0.329 Sum_probs=29.9
Q ss_pred CCceeEeCC--EEEEEEcC-CcccEEEECccccccccCCCCcccccccCcc-eEEc--cCCceEEEEcCCCCCCCCCCeE
Q 043552 50 QQYNYSIGD--VLVFKYTE-GQHNVYEVTQATYRSCVASSGVIGKYESGND-QVTL--TEAKKYWFICNVAGHCLGGMRF 123 (154)
Q Consensus 50 s~~~f~vGD--tLvF~y~~-~~HsV~~V~~~~y~~C~~~~~~~~~~~~G~~-~v~l--~~~G~~YFic~v~~HC~~GmKl 123 (154)
+..+++.|+ +|+|+... ..|++.. .+ . + .......|.+ ++++ +++|.|=|+|+...+ ||.
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i-~~-------~-~-~~~~l~~g~~~~~~f~~~~~G~y~~~C~~~~~----m~G 100 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRPHEFVI-PD-------L-G-ISKVLPPGETATVTFTPLKPGEYEFYCTMHPN----MKG 100 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS-EEEEE-GG-------G-T-EEEEE-TT-EEEEEEEE-S-EEEEEB-SSS-T----TB-
T ss_pred CEEEEcCCCeEEEEEEECCCCcEEEEE-CC-------C-c-eEEEECCCCEEEEEEcCCCCEEEEEEcCCCCc----cee
Confidence 378999999 55555442 3566522 22 1 1 1123344544 4555 899999999997553 777
Q ss_pred EEEe
Q 043552 124 SIDV 127 (154)
Q Consensus 124 ~I~V 127 (154)
.|.|
T Consensus 101 ~liV 104 (104)
T PF13473_consen 101 TLIV 104 (104)
T ss_dssp ----
T ss_pred cccC
Confidence 7665
No 13
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=95.48 E-value=0.067 Score=40.83 Aligned_cols=65 Identities=11% Similarity=0.122 Sum_probs=41.2
Q ss_pred CCCccccCCceeEeCCEEEEEEcCC---cccEEEECccccccccCCCCcccccccCcc---eEEccCCceEEEEcCCCCC
Q 043552 43 ANFDSWSQQYNYSIGDVLVFKYTEG---QHNVYEVTQATYRSCVASSGVIGKYESGND---QVTLTEAKKYWFICNVAGH 116 (154)
Q Consensus 43 ~~Y~~Was~~~f~vGDtLvF~y~~~---~HsV~~V~~~~y~~C~~~~~~~~~~~~G~~---~v~l~~~G~~YFic~v~~H 116 (154)
.+|.-=++.++++.||.+++.+.+. .|++.. .+|+ .......|.+ +++.+++|.|.|+|+. |
T Consensus 54 ~n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H~f~i---~~~g-------is~~I~pGet~TitF~adKpG~Y~y~C~~--H 121 (135)
T TIGR03096 54 FNVLNEPEALVVKKGTPVKVTVENKSPISEGFSI---DAYG-------ISEVIKAGETKTISFKADKAGAFTIWCQL--H 121 (135)
T ss_pred eeeEEcCCEEEECCCCEEEEEEEeCCCCccceEE---CCCC-------cceEECCCCeEEEEEECCCCEEEEEeCCC--C
Confidence 3555556788999999998877642 355421 1121 1122344544 4677999999999995 7
Q ss_pred CCC
Q 043552 117 CLG 119 (154)
Q Consensus 117 C~~ 119 (154)
|..
T Consensus 122 P~~ 124 (135)
T TIGR03096 122 PKN 124 (135)
T ss_pred Chh
Confidence 653
No 14
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=95.27 E-value=0.4 Score=37.53 Aligned_cols=80 Identities=23% Similarity=0.328 Sum_probs=51.2
Q ss_pred cCCceeEeCCEEEEEEcCC---cccEEEECccccc-----cc----cCC--CCcccccccCcc---eEEccCCceEEEEc
Q 043552 49 SQQYNYSIGDVLVFKYTEG---QHNVYEVTQATYR-----SC----VAS--SGVIGKYESGND---QVTLTEAKKYWFIC 111 (154)
Q Consensus 49 as~~~f~vGDtLvF~y~~~---~HsV~~V~~~~y~-----~C----~~~--~~~~~~~~~G~~---~v~l~~~G~~YFic 111 (154)
++...++.|.++.|.-.+. .|.... .+.+.. .= +-. .+-......|.. ++.++.+|.|=|+|
T Consensus 62 p~~~~v~aG~tv~~v~~n~~el~hef~~-~~~~~~~~~~~~~~~~~Dme~d~~~~v~L~PG~s~elvv~ft~~g~ye~~C 140 (158)
T COG4454 62 PSSFEVKAGETVRFVLKNEGELKHEFTM-DAPDKNLEHVTHMILADDMEHDDPNTVTLAPGKSGELVVVFTGAGKYEFAC 140 (158)
T ss_pred CCcccccCCcEEeeeecCcccceEEEec-cCccccchhHHHhhhCCccccCCcceeEeCCCCcEEEEEEecCCccEEEEe
Confidence 4567889999999887754 344322 211111 00 000 000012234443 78889999999999
Q ss_pred CCCCCCCCCCeEEEEeeC
Q 043552 112 NVAGHCLGGMRFSIDVKE 129 (154)
Q Consensus 112 ~v~~HC~~GmKl~I~V~~ 129 (154)
.+++|=+.||...|+|.+
T Consensus 141 ~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 141 NIPGHYEAGMVGEITVSP 158 (158)
T ss_pred cCCCcccCCcEEEEEeCC
Confidence 999999999999999963
No 15
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=95.00 E-value=0.21 Score=40.11 Aligned_cols=32 Identities=38% Similarity=0.710 Sum_probs=27.6
Q ss_pred EccCCceEEEEcCCCCCCCCCCeEEEEeeCCC
Q 043552 100 TLTEAKKYWFICNVAGHCLGGMRFSIDVKENP 131 (154)
Q Consensus 100 ~l~~~G~~YFic~v~~HC~~GmKl~I~V~~~~ 131 (154)
+-..+|.||+.|+.++|-+.||-..+.|.+.-
T Consensus 157 ~~~~~G~YwlvCgipGHAesGMw~~lIVSs~v 188 (195)
T TIGR03094 157 NDTSAGKYWLVCGITGHAESGMWAVVIVSSNV 188 (195)
T ss_pred ccCCCeeEEEEcccCChhhcCcEEEEEEecCc
Confidence 33478999999999999999999999887653
No 16
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=93.69 E-value=0.73 Score=38.20 Aligned_cols=81 Identities=23% Similarity=0.447 Sum_probs=45.9
Q ss_pred ceeEeCCEEEEE---EcCC------cccEEEECccccccccCCCCcccc------------------cccCcceEEccCC
Q 043552 52 YNYSIGDVLVFK---YTEG------QHNVYEVTQATYRSCVASSGVIGK------------------YESGNDQVTLTEA 104 (154)
Q Consensus 52 ~~f~vGDtLvF~---y~~~------~HsV~~V~~~~y~~C~~~~~~~~~------------------~~~G~~~v~l~~~ 104 (154)
+-.++||.|-+- |+.+ ..=+++|++++|+.|+....+... |+.-..-+.....
T Consensus 45 I~v~igD~ldIiCP~~e~~~~~~~E~yilYmV~~~~y~~C~~~s~~~~~~~C~rP~~~~kfsikFq~ftP~p~G~EF~pG 124 (233)
T KOG3858|consen 45 IYVQIGDYLDIICPHYEEGGPEGYEYYILYMVSEEEYDLCELRSKPFKRWECNRPSTPLKFSIKFQRFTPFPLGFEFQPG 124 (233)
T ss_pred EEeccCCEEEEECCCCCCCCCCcceEEEEEEeChHHhhhhhccCCCcEEEEecCCCcchhhhhhheecCCCCCCccccCC
Confidence 345678888764 3321 124688999999999963211111 1111112223333
Q ss_pred ceEEEEcC-----------CCCCCCC-CCeEEEEeeCCCC
Q 043552 105 KKYWFICN-----------VAGHCLG-GMRFSIDVKENPT 132 (154)
Q Consensus 105 G~~YFic~-----------v~~HC~~-GmKl~I~V~~~~~ 132 (154)
-+|||||+ .++-|.. .||+.+.|...+.
T Consensus 125 ~~YY~IStStg~~~g~~~~~ggvc~~~~mk~~~~V~~~~~ 164 (233)
T KOG3858|consen 125 HTYYYISTSTGDAEGLCNLRGGVCVTRNMKLLMKVGQSPR 164 (233)
T ss_pred CeEEEEeCCCccccccchhhCCEeccCCceEEEEecccCC
Confidence 45777765 3345664 7999999876544
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=93.35 E-value=0.4 Score=40.80 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=50.3
Q ss_pred CceeEeCCEEEEEEcCC-----cccEEEECccccccccCCCCcccccccCcc---eEEccCCceEEEEcCC----CCCCC
Q 043552 51 QYNYSIGDVLVFKYTEG-----QHNVYEVTQATYRSCVASSGVIGKYESGND---QVTLTEAKKYWFICNV----AGHCL 118 (154)
Q Consensus 51 ~~~f~vGDtLvF~y~~~-----~HsV~~V~~~~y~~C~~~~~~~~~~~~G~~---~v~l~~~G~~YFic~v----~~HC~ 118 (154)
.++++.||+++..+.+. .|++..=-... ....+.......|.+ .++++.+|++||-|.. ..|=.
T Consensus 60 ~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~~----~dg~~~~~~I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~ 135 (311)
T TIGR02376 60 LIRVHEGDYVELTLINPPTNTMPHNVDFHAATG----ALGGAALTQVNPGETATLRFKATRPGAFVYHCAPPGMVPWHVV 135 (311)
T ss_pred eEEEECCCEEEEEEEeCCCCCCceeeeecCCCc----cCCCCcceeECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhh
Confidence 47899999999887764 46653211100 000011122345554 6778899999999995 34778
Q ss_pred CCCeEEEEeeCCC
Q 043552 119 GGMRFSIDVKENP 131 (154)
Q Consensus 119 ~GmKl~I~V~~~~ 131 (154)
.||...+.|.+..
T Consensus 136 ~Gl~G~liV~~~~ 148 (311)
T TIGR02376 136 SGMNGAIMVLPRE 148 (311)
T ss_pred cCcceEEEeeccC
Confidence 8999999998653
No 18
>PRK02888 nitrous-oxide reductase; Validated
Probab=93.04 E-value=0.41 Score=44.83 Aligned_cols=67 Identities=22% Similarity=0.379 Sum_probs=44.4
Q ss_pred CceeEeCCEEEEEEcCC------cccEEEECccccccccCCCCcccccccCcc---eEEccCCceEEEEcCCCCCCCC--
Q 043552 51 QYNYSIGDVLVFKYTEG------QHNVYEVTQATYRSCVASSGVIGKYESGND---QVTLTEAKKYWFICNVAGHCLG-- 119 (154)
Q Consensus 51 ~~~f~vGDtLvF~y~~~------~HsV~~V~~~~y~~C~~~~~~~~~~~~G~~---~v~l~~~G~~YFic~v~~HC~~-- 119 (154)
..+++.||.+.|..++- .|+... .+| +.-.....|.+ +++.++||.|||+|+. .|..
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~I---p~~-------nI~~dv~PG~t~svtF~adkPGvy~~~Cte--fCGa~H 623 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTHGFAI---PNY-------GVNMEVAPQATASVTFTADKPGVYWYYCTW--FCHALH 623 (635)
T ss_pred eEEecCCCEEEEEEEeCCcccccccceee---ccc-------CccEEEcCCceEEEEEEcCCCEEEEEECCc--ccccCc
Confidence 57899999999999862 343311 111 11112234443 5778999999999995 4553
Q ss_pred -CCeEEEEeeC
Q 043552 120 -GMRFSIDVKE 129 (154)
Q Consensus 120 -GmKl~I~V~~ 129 (154)
+|...|.|.+
T Consensus 624 ~~M~G~~iVep 634 (635)
T PRK02888 624 MEMRGRMLVEP 634 (635)
T ss_pred ccceEEEEEEe
Confidence 7999998875
No 19
>PLN02354 copper ion binding / oxidoreductase
Probab=92.62 E-value=1.7 Score=39.96 Aligned_cols=73 Identities=11% Similarity=0.160 Sum_probs=48.8
Q ss_pred CceeEeCCEEEEEEcCC--------cccEEEECccccc-----cccCCCCcccccccCcc---eEEc-cCCceEEEEcCC
Q 043552 51 QYNYSIGDVLVFKYTEG--------QHNVYEVTQATYR-----SCVASSGVIGKYESGND---QVTL-TEAKKYWFICNV 113 (154)
Q Consensus 51 ~~~f~vGDtLvF~y~~~--------~HsV~~V~~~~y~-----~C~~~~~~~~~~~~G~~---~v~l-~~~G~~YFic~v 113 (154)
.++++.||+|+.+..+. -|-+.+-.....| .|-. ..|.+ .|++ +.+|++||=|-.
T Consensus 59 ~I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~TQcpI--------~PG~sf~Y~F~~~~q~GT~WYHsH~ 130 (552)
T PLN02354 59 NINSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPGTNCPI--------PPGTNFTYHFQPKDQIGSYFYYPST 130 (552)
T ss_pred cEEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcCCcCCC--------CCCCcEEEEEEeCCCCcceEEecCc
Confidence 47899999999888754 1344332111112 2322 23433 5676 468999999998
Q ss_pred CCCCCCCCeEEEEeeCCC
Q 043552 114 AGHCLGGMRFSIDVKENP 131 (154)
Q Consensus 114 ~~HC~~GmKl~I~V~~~~ 131 (154)
..+-..|+...|.|....
T Consensus 131 ~~Q~~~Gl~G~lII~~~~ 148 (552)
T PLN02354 131 GMHRAAGGFGGLRVNSRL 148 (552)
T ss_pred cceecCCccceEEEcCCc
Confidence 888889999999997653
No 20
>PLN02604 oxidoreductase
Probab=91.86 E-value=1.8 Score=39.77 Aligned_cols=81 Identities=11% Similarity=0.045 Sum_probs=50.9
Q ss_pred CCceeEeCCEEEEEEcCC----cccEEEECccccccccCCCCc----ccccccCcc---eEEccCCceEEEEcCCCCCCC
Q 043552 50 QQYNYSIGDVLVFKYTEG----QHNVYEVTQATYRSCVASSGV----IGKYESGND---QVTLTEAKKYWFICNVAGHCL 118 (154)
Q Consensus 50 s~~~f~vGDtLvF~y~~~----~HsV~~V~~~~y~~C~~~~~~----~~~~~~G~~---~v~l~~~G~~YFic~v~~HC~ 118 (154)
..++++.||+++++..+. .|++..=-- ........++. ......|.+ .++++.+|++||=|-...|-.
T Consensus 55 P~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~-~~~~~~~~DG~~~~tq~~i~pg~s~~y~f~~~~~Gt~wyH~H~~~q~~ 133 (566)
T PLN02604 55 PTILAQQGDTVIVELKNSLLTENVAIHWHGI-RQIGTPWFDGTEGVTQCPILPGETFTYEFVVDRPGTYLYHAHYGMQRE 133 (566)
T ss_pred CcEEEECCCEEEEEEEeCCCCCCCCEEeCCC-CCCCCccccCCCccccCccCCCCeEEEEEEcCCCEEEEEeeCcHHHHh
Confidence 468899999999988864 123321000 00011111110 011234444 677889999999999999999
Q ss_pred CCCeEEEEeeCCC
Q 043552 119 GGMRFSIDVKENP 131 (154)
Q Consensus 119 ~GmKl~I~V~~~~ 131 (154)
.||...|.|....
T Consensus 134 ~Gl~G~liV~~~~ 146 (566)
T PLN02604 134 AGLYGSIRVSLPR 146 (566)
T ss_pred CCCeEEEEEEecC
Confidence 9999999998653
No 21
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=91.73 E-value=0.86 Score=33.32 Aligned_cols=79 Identities=18% Similarity=0.215 Sum_probs=48.5
Q ss_pred CceeEeCCEEEEEEcCC---cccEEEECccccccccCCCC----cccccccCcc---eEEccC-CceEEEEcCCCCCCCC
Q 043552 51 QYNYSIGDVLVFKYTEG---QHNVYEVTQATYRSCVASSG----VIGKYESGND---QVTLTE-AKKYWFICNVAGHCLG 119 (154)
Q Consensus 51 ~~~f~vGDtLvF~y~~~---~HsV~~V~~~~y~~C~~~~~----~~~~~~~G~~---~v~l~~-~G~~YFic~v~~HC~~ 119 (154)
.++++.||+|..++.+. .+++..=- -.+..-...++ .......|.+ .++++. +|++||-|...+|=..
T Consensus 27 tI~v~~Gd~v~i~~~N~l~~~~siH~HG-~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~~ 105 (117)
T PF07732_consen 27 TIRVREGDTVRITVTNNLDEPTSIHWHG-LHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYWYHSHVHGQQVM 105 (117)
T ss_dssp EEEEETTEEEEEEEEEESSSGBSEEEET-SBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEEEEECSTTHHHT
T ss_pred EEEEEcCCeeEEEEEeccccccccccce-eeeeeeeecCCcccccceeEEeecceeeeEeeeccccceeEeeCCCchhcC
Confidence 57899999999998853 44443210 00111000111 1112233443 678888 9999999999885458
Q ss_pred CCeEEEEeeCC
Q 043552 120 GMRFSIDVKEN 130 (154)
Q Consensus 120 GmKl~I~V~~~ 130 (154)
||-..+.|.+.
T Consensus 106 GL~G~~iV~~~ 116 (117)
T PF07732_consen 106 GLYGAIIVEPP 116 (117)
T ss_dssp TEEEEEEEE-T
T ss_pred cCEEEEEEcCC
Confidence 99999999764
No 22
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=91.71 E-value=1.7 Score=32.77 Aligned_cols=32 Identities=34% Similarity=0.626 Sum_probs=23.2
Q ss_pred cCcc-eEEcc----CCce-EEEEcCCCCCCCCCCeEEEE
Q 043552 94 SGND-QVTLT----EAKK-YWFICNVAGHCLGGMRFSID 126 (154)
Q Consensus 94 ~G~~-~v~l~----~~G~-~YFic~v~~HC~~GmKl~I~ 126 (154)
.|.. +++++ ++|. |=|+|+.++|=. .||..+.
T Consensus 87 gGes~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 87 GGEKTSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred CCceEEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 4433 56554 3675 889999999986 7998765
No 23
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=91.08 E-value=1.1 Score=32.92 Aligned_cols=66 Identities=18% Similarity=0.260 Sum_probs=41.6
Q ss_pred CCceeEeCCEEEEEEcCC--cccEEEECccccccccCCCCcccccccCcc---eEEccCCceEEEEcCCCCCCCCC---C
Q 043552 50 QQYNYSIGDVLVFKYTEG--QHNVYEVTQATYRSCVASSGVIGKYESGND---QVTLTEAKKYWFICNVAGHCLGG---M 121 (154)
Q Consensus 50 s~~~f~vGDtLvF~y~~~--~HsV~~V~~~~y~~C~~~~~~~~~~~~G~~---~v~l~~~G~~YFic~v~~HC~~G---m 121 (154)
....+..|+.+.|..++. .|+... .+-+.+ ..--+|.. .++.+++|.|++.|+ ..|..| |
T Consensus 46 ~~l~lp~g~~v~~~ltS~DViHsf~i-p~~~~k---------~d~~PG~~~~~~~~~~~~G~y~~~C~--e~CG~gH~~M 113 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSEDVIHSFWI-PELGIK---------MDAIPGRTNSVTFTPDKPGTYYGQCA--EYCGAGHSFM 113 (120)
T ss_dssp SEEEEETTSEEEEEEEESSS-EEEEE-TTCTEE---------EEEBTTCEEEEEEEESSSEEEEEEE---SSSSTTGGG-
T ss_pred ceecccccceEeEEEEcCCccccccc-cccCcc---------cccccccceeeeeeeccCCcEEEcCc--cccCcCcCCC
Confidence 446778999999998853 566532 211111 11123432 577899999999999 589986 8
Q ss_pred eEEEEe
Q 043552 122 RFSIDV 127 (154)
Q Consensus 122 Kl~I~V 127 (154)
+..|.|
T Consensus 114 ~~~v~V 119 (120)
T PF00116_consen 114 PGKVIV 119 (120)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 887776
No 24
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO). These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....
Probab=88.66 E-value=1.5 Score=33.77 Aligned_cols=34 Identities=26% Similarity=0.361 Sum_probs=23.6
Q ss_pred ceeEeCCEEEEEEcCC-----------cccEEEECccccccccCC
Q 043552 52 YNYSIGDVLVFKYTEG-----------QHNVYEVTQATYRSCVAS 85 (154)
Q Consensus 52 ~~f~vGDtLvF~y~~~-----------~HsV~~V~~~~y~~C~~~ 85 (154)
..+++||.|-+-=+.. ...+.+|++++|+.|+..
T Consensus 24 i~V~i~D~ldIiCP~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~ 68 (145)
T PF00812_consen 24 IEVRIGDYLDIICPHYEPGGPPPEEYEYYILYMVSEEGYESCSLT 68 (145)
T ss_dssp EEE-TTEEEEEEE--SSSSSSSCSSS-BEEEEEE-HHHHHHTBSS
T ss_pred EEecCCCEEEEECCCCCCCCCCCCCceEEEEEEEcHHHhcccCCC
Confidence 5678999999864422 345788999999999964
No 25
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=86.60 E-value=3.5 Score=32.76 Aligned_cols=68 Identities=19% Similarity=0.193 Sum_probs=42.8
Q ss_pred CceeEeCCEEEEEEcCC--cccEEEECccccccccCCCCcccccccCcc---eEEccCCceEEEEcCCCCCCCC---CCe
Q 043552 51 QYNYSIGDVLVFKYTEG--QHNVYEVTQATYRSCVASSGVIGKYESGND---QVTLTEAKKYWFICNVAGHCLG---GMR 122 (154)
Q Consensus 51 ~~~f~vGDtLvF~y~~~--~HsV~~V~~~~y~~C~~~~~~~~~~~~G~~---~v~l~~~G~~YFic~v~~HC~~---GmK 122 (154)
...+.+|+.++|.-++. .|+... +.-+....--+|.. .++.+++|.|+..|+. .|.. .|+
T Consensus 118 ~l~vp~g~~v~~~~ts~DV~Hsf~i----------p~~~~k~da~PG~~~~~~~~~~~~G~y~~~c~e--~cG~~h~~M~ 185 (201)
T TIGR02866 118 ELVVPAGTPVRLQVTSKDVIHSFWV----------PELGGKIDAIPGQYNALWFNADEPGVYYGYCAE--LCGAGHSLML 185 (201)
T ss_pred EEEEEcCCEEEEEEEeCchhhcccc----------cccCceEEecCCcEEEEEEEeCCCEEEEEEehh--hCCcCccCCe
Confidence 34678999999988753 333211 11011111123332 5678999999999995 6664 599
Q ss_pred EEEEeeCC
Q 043552 123 FSIDVKEN 130 (154)
Q Consensus 123 l~I~V~~~ 130 (154)
+.|.|.+.
T Consensus 186 ~~v~v~~~ 193 (201)
T TIGR02866 186 FKVVVVER 193 (201)
T ss_pred EEEEEECH
Confidence 99998764
No 26
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=85.29 E-value=9.9 Score=35.50 Aligned_cols=73 Identities=18% Similarity=0.219 Sum_probs=49.3
Q ss_pred CceeEeCCEEEEEEcCC--------cccEEEECccccc-----cccCCCCcccccccCcc---eEEc-cCCceEEEEcCC
Q 043552 51 QYNYSIGDVLVFKYTEG--------QHNVYEVTQATYR-----SCVASSGVIGKYESGND---QVTL-TEAKKYWFICNV 113 (154)
Q Consensus 51 ~~~f~vGDtLvF~y~~~--------~HsV~~V~~~~y~-----~C~~~~~~~~~~~~G~~---~v~l-~~~G~~YFic~v 113 (154)
.++++.||+|+.+..+. -|-+.+-...-.| .|-. ..|.+ .+++ +.+|++||=+..
T Consensus 61 tI~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~TQcPI--------~PG~sftY~F~~~dq~GT~WYHsH~ 132 (596)
T PLN00044 61 ALNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVGGTNCAI--------PAGWNWTYQFQVKDQVGSFFYAPST 132 (596)
T ss_pred cEEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCCCCcCCc--------CCCCcEEEEEEeCCCCceeEeeccc
Confidence 57899999999987754 1344332111112 2322 23433 6777 479999999998
Q ss_pred CCCCCCCCeEEEEeeCCC
Q 043552 114 AGHCLGGMRFSIDVKENP 131 (154)
Q Consensus 114 ~~HC~~GmKl~I~V~~~~ 131 (154)
+.+-..|+...|.|....
T Consensus 133 ~~Q~~~Gl~GalII~~~~ 150 (596)
T PLN00044 133 ALHRAAGGYGAITINNRD 150 (596)
T ss_pred hhhhhCcCeeEEEEcCcc
Confidence 888889999999998654
No 27
>PLN02191 L-ascorbate oxidase
Probab=85.27 E-value=6.4 Score=36.38 Aligned_cols=77 Identities=13% Similarity=0.136 Sum_probs=48.7
Q ss_pred CceeEeCCEEEEEEcCCc---------ccEEEECcccccc-ccCCCCcccccccCcc---eEEccCCceEEEEcCCCCCC
Q 043552 51 QYNYSIGDVLVFKYTEGQ---------HNVYEVTQATYRS-CVASSGVIGKYESGND---QVTLTEAKKYWFICNVAGHC 117 (154)
Q Consensus 51 ~~~f~vGDtLvF~y~~~~---------HsV~~V~~~~y~~-C~~~~~~~~~~~~G~~---~v~l~~~G~~YFic~v~~HC 117 (154)
.++++.||+|+.+..+.- |.+.+-...-+|. -..+. .....|.+ .++++.+|++||=|-.+.+-
T Consensus 55 ~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvtq---~pI~PG~s~~Y~f~~~~~GT~wYHsH~~~q~ 131 (574)
T PLN02191 55 TIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVTQ---CAINPGETFTYKFTVEKPGTHFYHGHYGMQR 131 (574)
T ss_pred eEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCcccc---CCcCCCCeEEEEEECCCCeEEEEeeCcHHHH
Confidence 578999999998887541 2221111100111 00000 11233443 67888999999999998888
Q ss_pred CCCCeEEEEeeCC
Q 043552 118 LGGMRFSIDVKEN 130 (154)
Q Consensus 118 ~~GmKl~I~V~~~ 130 (154)
..||...|.|...
T Consensus 132 ~~Gl~G~liV~~~ 144 (574)
T PLN02191 132 SAGLYGSLIVDVA 144 (574)
T ss_pred hCCCEEEEEEccC
Confidence 9999999999754
No 28
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=85.00 E-value=6.6 Score=34.69 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=20.7
Q ss_pred eEEccCCceEEEEcCCCCCCCCCCeEEEEeeCC
Q 043552 98 QVTLTEAKKYWFICNVAGHCLGGMRFSIDVKEN 130 (154)
Q Consensus 98 ~v~l~~~G~~YFic~v~~HC~~GmKl~I~V~~~ 130 (154)
+++| +||+|-|+|+. | ..|+..|+|..+
T Consensus 91 ~~~L-~pGtY~~~C~~--~--~~~~g~l~Vtg~ 118 (375)
T PRK10378 91 TANL-QPGEYDMTCGL--L--TNPKGKLIVKGE 118 (375)
T ss_pred EEec-CCceEEeecCc--C--CCCCceEEEeCC
Confidence 4455 79999999975 5 445888888754
No 29
>PLN02168 copper ion binding / pectinesterase
Probab=84.01 E-value=14 Score=34.06 Aligned_cols=77 Identities=10% Similarity=0.085 Sum_probs=48.9
Q ss_pred CceeEeCCEEEEEEcCCc--------ccEEEECcccccc-ccCCCCcccccccCcc---eEEcc-CCceEEEEcCCCCCC
Q 043552 51 QYNYSIGDVLVFKYTEGQ--------HNVYEVTQATYRS-CVASSGVIGKYESGND---QVTLT-EAKKYWFICNVAGHC 117 (154)
Q Consensus 51 ~~~f~vGDtLvF~y~~~~--------HsV~~V~~~~y~~-C~~~~~~~~~~~~G~~---~v~l~-~~G~~YFic~v~~HC 117 (154)
.++++.||+|+.+..+.- |.+.+-.....|. -. ..-+| ..|.+ .++++ .+|++||=|-...+=
T Consensus 58 ~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~g-tQcpI---~PG~sftY~F~~~~q~GT~WYHsH~~~Q~ 133 (545)
T PLN02168 58 LLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRG-TNCPI---LPGTNWTYRFQVKDQIGSYFYFPSLLLQK 133 (545)
T ss_pred cEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCC-CcCCC---CCCCcEEEEEEeCCCCceEEEecChhhhh
Confidence 578999999999988641 4433321111121 00 11112 23433 67774 799999999877777
Q ss_pred CCCCeEEEEeeCCC
Q 043552 118 LGGMRFSIDVKENP 131 (154)
Q Consensus 118 ~~GmKl~I~V~~~~ 131 (154)
..|+...+.|....
T Consensus 134 ~~GL~G~lII~~~~ 147 (545)
T PLN02168 134 AAGGYGAIRIYNPE 147 (545)
T ss_pred hCcceeEEEEcCCc
Confidence 78999999998654
No 30
>PLN02835 oxidoreductase
Probab=83.93 E-value=19 Score=33.12 Aligned_cols=78 Identities=10% Similarity=0.144 Sum_probs=48.6
Q ss_pred CceeEeCCEEEEEEcCC--------cccEEEECccccccccCCCCcccccccCcc---eEEc-cCCceEEEEcCCCCCCC
Q 043552 51 QYNYSIGDVLVFKYTEG--------QHNVYEVTQATYRSCVASSGVIGKYESGND---QVTL-TEAKKYWFICNVAGHCL 118 (154)
Q Consensus 51 ~~~f~vGDtLvF~y~~~--------~HsV~~V~~~~y~~C~~~~~~~~~~~~G~~---~v~l-~~~G~~YFic~v~~HC~ 118 (154)
.++++.||+|+.+..+. -|-+.+-.....|.=-...-++ ..|.+ .|++ +.+|++||=|-...+-.
T Consensus 61 ~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~tQ~pI---~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~ 137 (539)
T PLN02835 61 RLDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPI---PPNSNYTYKFQTKDQIGTFTYFPSTLFHKA 137 (539)
T ss_pred CEEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCccCcCCC---CCCCcEEEEEEECCCCEeEEEEeCccchhc
Confidence 57899999999888764 1333322111122100011112 33443 5665 57999999998888888
Q ss_pred CCCeEEEEeeCCC
Q 043552 119 GGMRFSIDVKENP 131 (154)
Q Consensus 119 ~GmKl~I~V~~~~ 131 (154)
.|+...+.|.+.+
T Consensus 138 ~Gl~G~lIV~~~~ 150 (539)
T PLN02835 138 AGGFGAINVYERP 150 (539)
T ss_pred CcccceeEEeCCC
Confidence 9999999997543
No 31
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=83.48 E-value=3.7 Score=37.50 Aligned_cols=78 Identities=12% Similarity=0.123 Sum_probs=50.2
Q ss_pred CceeEeCCEEEEEEcCCc----ccEEE----ECcccc-cc-ccCCCCcccccccCcc---eEEccCCceEEEEcCCCCCC
Q 043552 51 QYNYSIGDVLVFKYTEGQ----HNVYE----VTQATY-RS-CVASSGVIGKYESGND---QVTLTEAKKYWFICNVAGHC 117 (154)
Q Consensus 51 ~~~f~vGDtLvF~y~~~~----HsV~~----V~~~~y-~~-C~~~~~~~~~~~~G~~---~v~l~~~G~~YFic~v~~HC 117 (154)
.++++.||+|+++..+.- +++.. +....+ |. -..+. .....|.+ .++++.+|++||-|-.+.|-
T Consensus 33 ~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq---~~I~PG~s~~y~f~~~~~Gt~wyH~H~~~q~ 109 (541)
T TIGR03388 33 TIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQ---CAINPGETFIYNFVVDRPGTYFYHGHYGMQR 109 (541)
T ss_pred eEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCcccc---CCcCCCCEEEEEEEcCCCEEEEEEecchHHh
Confidence 588999999999887642 22211 000111 10 00000 11234443 67888999999999998899
Q ss_pred CCCCeEEEEeeCCC
Q 043552 118 LGGMRFSIDVKENP 131 (154)
Q Consensus 118 ~~GmKl~I~V~~~~ 131 (154)
..||...|.|....
T Consensus 110 ~~Gl~G~liV~~~~ 123 (541)
T TIGR03388 110 SAGLYGSLIVDVPD 123 (541)
T ss_pred hccceEEEEEecCC
Confidence 99999999998653
No 32
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=81.90 E-value=8.2 Score=30.92 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=27.4
Q ss_pred eEEccCCceEEEEcCCCCCCCCC---CeEEEEeeCCCC
Q 043552 98 QVTLTEAKKYWFICNVAGHCLGG---MRFSIDVKENPT 132 (154)
Q Consensus 98 ~v~l~~~G~~YFic~v~~HC~~G---mKl~I~V~~~~~ 132 (154)
.++.+++|.++..|+ .-|..| |++.|.|.++.+
T Consensus 159 ~~~~~~~G~y~g~C~--e~CG~~H~~M~~~v~v~~~~~ 194 (194)
T MTH00047 159 FFCPDRHGVFVGYCS--ELCGVGHSYMPIVIEVVDVDS 194 (194)
T ss_pred EEEcCCCEEEEEEee--hhhCcCcccCcEEEEEEcCCC
Confidence 466789999999999 689864 999999987653
No 33
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.74 E-value=27 Score=32.52 Aligned_cols=79 Identities=18% Similarity=0.287 Sum_probs=52.6
Q ss_pred CceeEeCCEEEEEEcCC--------cccEEEECcccc-ccccCCCCcccccccCcc---eEEcc-CCceEEEEcCCCCCC
Q 043552 51 QYNYSIGDVLVFKYTEG--------QHNVYEVTQATY-RSCVASSGVIGKYESGND---QVTLT-EAKKYWFICNVAGHC 117 (154)
Q Consensus 51 ~~~f~vGDtLvF~y~~~--------~HsV~~V~~~~y-~~C~~~~~~~~~~~~G~~---~v~l~-~~G~~YFic~v~~HC 117 (154)
.+.+..||+|+.+..+. -|.|.+- +..| |. ... ..-...+|.+ .++++ ..|++||.+...-|-
T Consensus 60 ~I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~-kn~w~DG-~~~--TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~R 135 (563)
T KOG1263|consen 60 TINAEEGDTIVVNVVNRLDEPFSIHWHGVRQR-KNPWQDG-VYI--TQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQR 135 (563)
T ss_pred eEEEEeCCEEEEEEEeCCCCceEEEecccccc-CCccccC-Ccc--ccCCcCCCCeEEEEEEeCCcceeEEEeecccccc
Confidence 47899999999887753 2344332 2222 12 100 0011234443 67887 789999999999999
Q ss_pred CCCCeEEEEeeCCCCC
Q 043552 118 LGGMRFSIDVKENPTL 133 (154)
Q Consensus 118 ~~GmKl~I~V~~~~~~ 133 (154)
..|+..++.|.+.+..
T Consensus 136 a~G~~G~liI~~~~~~ 151 (563)
T KOG1263|consen 136 ATGVFGALIINPRPGL 151 (563)
T ss_pred ccCceeEEEEcCCccC
Confidence 9999999999887654
No 34
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=76.56 E-value=1.5 Score=25.93 Aligned_cols=18 Identities=22% Similarity=0.754 Sum_probs=11.0
Q ss_pred CccccCCceeEeCCEEEE
Q 043552 45 FDSWSQQYNYSIGDVLVF 62 (154)
Q Consensus 45 Y~~Was~~~f~vGDtLvF 62 (154)
|..|.++++...||++.|
T Consensus 1 ~p~W~~~~~Y~~Gd~V~~ 18 (41)
T PF02839_consen 1 YPAWDPGTTYNAGDRVSY 18 (41)
T ss_dssp --B--TTCEE-TT-EEEE
T ss_pred CCCcCCCCEEcCCCEEEE
Confidence 578999999999999986
No 35
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=74.97 E-value=3.3 Score=34.47 Aligned_cols=32 Identities=31% Similarity=0.461 Sum_probs=27.4
Q ss_pred eEEccCCceEEEEcCCCCCCCCC---CeEEEEeeCCC
Q 043552 98 QVTLTEAKKYWFICNVAGHCLGG---MRFSIDVKENP 131 (154)
Q Consensus 98 ~v~l~~~G~~YFic~v~~HC~~G---mKl~I~V~~~~ 131 (154)
.++.+++|.|+.+|+ ..|..| |++.|.|.+..
T Consensus 180 ~~~~~~~G~Y~g~Ca--e~CG~gH~~M~~~v~vvs~~ 214 (247)
T COG1622 180 WLTANKPGTYRGICA--EYCGPGHSFMRFKVIVVSQE 214 (247)
T ss_pred EEecCCCeEEEEEcH--hhcCCCcccceEEEEEEcHH
Confidence 567899999999999 689864 99999998754
No 36
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=71.96 E-value=2.6 Score=30.16 Aligned_cols=6 Identities=50% Similarity=0.822 Sum_probs=3.6
Q ss_pred CCcccch
Q 043552 1 MEDQKVF 7 (154)
Q Consensus 1 m~~~~~~ 7 (154)
|+ +|.+
T Consensus 1 Ma-SK~~ 6 (95)
T PF07172_consen 1 MA-SKAF 6 (95)
T ss_pred Cc-hhHH
Confidence 77 5554
No 37
>PLN02991 oxidoreductase
Probab=69.60 E-value=91 Score=28.80 Aligned_cols=78 Identities=10% Similarity=0.161 Sum_probs=48.1
Q ss_pred CceeEeCCEEEEEEcCCc--------ccEEEECccccccccCCCCcccccccCcc---eEEc-cCCceEEEEcCCCCCCC
Q 043552 51 QYNYSIGDVLVFKYTEGQ--------HNVYEVTQATYRSCVASSGVIGKYESGND---QVTL-TEAKKYWFICNVAGHCL 118 (154)
Q Consensus 51 ~~~f~vGDtLvF~y~~~~--------HsV~~V~~~~y~~C~~~~~~~~~~~~G~~---~v~l-~~~G~~YFic~v~~HC~ 118 (154)
.++++.||+|+.+..+.- |.+.+......|.=....-+| ..|.+ .+++ +.+|++||=+-...+-.
T Consensus 60 ~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~tQcpI---~PG~sftY~F~~~~q~GT~WYHsH~~~q~~ 136 (543)
T PLN02991 60 DIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYGTTCPI---PPGKNYTYALQVKDQIGSFYYFPSLGFHKA 136 (543)
T ss_pred cEEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCCCCCcc---CCCCcEEEEEEeCCCCcceEEecCcchhhh
Confidence 578999999999887651 333332111112100001112 23433 5777 47999999988777767
Q ss_pred CCCeEEEEeeCCC
Q 043552 119 GGMRFSIDVKENP 131 (154)
Q Consensus 119 ~GmKl~I~V~~~~ 131 (154)
.|+...+.|.+.+
T Consensus 137 ~Gl~G~lIV~~~~ 149 (543)
T PLN02991 137 AGGFGAIRISSRP 149 (543)
T ss_pred CCCeeeEEEeCCc
Confidence 7999999998653
No 38
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=66.19 E-value=35 Score=31.81 Aligned_cols=77 Identities=12% Similarity=0.211 Sum_probs=47.1
Q ss_pred CceeEeCCEEEEEEcCCc---ccEEEECccccccccCCCCc----ccccccCcc---eEEccCCceEEEEcCCCCCCCCC
Q 043552 51 QYNYSIGDVLVFKYTEGQ---HNVYEVTQATYRSCVASSGV----IGKYESGND---QVTLTEAKKYWFICNVAGHCLGG 120 (154)
Q Consensus 51 ~~~f~vGDtLvF~y~~~~---HsV~~V~~~~y~~C~~~~~~----~~~~~~G~~---~v~l~~~G~~YFic~v~~HC~~G 120 (154)
.++++.||.++.++.+.- +++.. . +...-+..+++ ......|.+ .+++..+|+|||-|-...+=+.|
T Consensus 77 ~ir~~~Gd~v~v~v~N~l~~~tsiHw--H-Gl~~~~~~DGvP~vt~~~I~PG~s~~Y~f~~~~~GTyWYHsH~~~q~~~G 153 (587)
T TIGR01480 77 LLRWREGDTVRLRVTNTLPEDTSIHW--H-GILLPFQMDGVPGVSFAGIAPGETFTYRFPVRQSGTYWYHSHSGFQEQAG 153 (587)
T ss_pred eEEEECCCEEEEEEEcCCCCCceEEc--C-CCcCCccccCCCcccccccCCCCeEEEEEECCCCeeEEEecCchhHhhcc
Confidence 578999999999887641 12210 0 00000111111 011123443 67788999999999887777789
Q ss_pred CeEEEEeeCC
Q 043552 121 MRFSIDVKEN 130 (154)
Q Consensus 121 mKl~I~V~~~ 130 (154)
+-..|.|.+.
T Consensus 154 L~G~lIV~~~ 163 (587)
T TIGR01480 154 LYGPLIIDPA 163 (587)
T ss_pred ceEEEEECCC
Confidence 9999999753
No 39
>PLN02792 oxidoreductase
Probab=62.18 E-value=30 Score=31.83 Aligned_cols=73 Identities=16% Similarity=0.236 Sum_probs=47.6
Q ss_pred CceeEeCCEEEEEEcCC--------cccEEEECccccc-----cccCCCCcccccccCcc---eEEc-cCCceEEEEcCC
Q 043552 51 QYNYSIGDVLVFKYTEG--------QHNVYEVTQATYR-----SCVASSGVIGKYESGND---QVTL-TEAKKYWFICNV 113 (154)
Q Consensus 51 ~~~f~vGDtLvF~y~~~--------~HsV~~V~~~~y~-----~C~~~~~~~~~~~~G~~---~v~l-~~~G~~YFic~v 113 (154)
.++++.||+|+.+..+. -|.+.+-...-.| .|- | ..|.+ .+++ +.+|++||=|-.
T Consensus 48 ~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~tqcP-----I---~PG~sftY~F~~~~q~GT~WYHsH~ 119 (536)
T PLN02792 48 EIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGTTCP-----I---PPGKNYTYDFQVKDQVGSYFYFPSL 119 (536)
T ss_pred cEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCCcCc-----c---CCCCcEEEEEEeCCCccceEEecCc
Confidence 57899999999988864 1333332110011 122 1 33443 5777 479999999998
Q ss_pred CCCCCCCCeEEEEeeCCC
Q 043552 114 AGHCLGGMRFSIDVKENP 131 (154)
Q Consensus 114 ~~HC~~GmKl~I~V~~~~ 131 (154)
..+-..|+...+.|.+.+
T Consensus 120 ~~q~~~Gl~G~liI~~~~ 137 (536)
T PLN02792 120 AVQKAAGGYGSLRIYSLP 137 (536)
T ss_pred chhhhcccccceEEeCCc
Confidence 877778998888877643
No 40
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=61.79 E-value=10 Score=27.09 Aligned_cols=10 Identities=20% Similarity=0.883 Sum_probs=7.6
Q ss_pred CCCCccccCC
Q 043552 42 GANFDSWSQQ 51 (154)
Q Consensus 42 ~~~Y~~Was~ 51 (154)
.++|++|.+.
T Consensus 48 ~p~Y~PWf~P 57 (91)
T TIGR01165 48 GPDYKPWFSP 57 (91)
T ss_pred CCCCcccccc
Confidence 5689999754
No 41
>PRK10883 FtsI repressor; Provisional
Probab=58.21 E-value=60 Score=29.23 Aligned_cols=74 Identities=16% Similarity=0.247 Sum_probs=44.0
Q ss_pred CceeEeCCEEEEEEcCCc--------ccEEEECccccccccCCCCcccccccCcc---eEEcc-CCceEEEEcCCCC---
Q 043552 51 QYNYSIGDVLVFKYTEGQ--------HNVYEVTQATYRSCVASSGVIGKYESGND---QVTLT-EAKKYWFICNVAG--- 115 (154)
Q Consensus 51 ~~~f~vGDtLvF~y~~~~--------HsV~~V~~~~y~~C~~~~~~~~~~~~G~~---~v~l~-~~G~~YFic~v~~--- 115 (154)
.++++.||+|+.++.+.- |.+. +... ++ +++......|.+ .++++ .+|++||=+-..+
T Consensus 78 tir~~~Gd~v~v~v~N~L~~~ttiHwHGl~-~~~~-~~-----~g~~~~I~PG~~~~y~f~~~~~aGT~WYH~H~~~~t~ 150 (471)
T PRK10883 78 TIRVWKGDDVKLIYSNRLTEPVSMTVSGLQ-VPGP-LM-----GGPARMMSPNADWAPVLPIRQNAATCWYHANTPNRMA 150 (471)
T ss_pred eEEEECCCEEEEEEEeCCCCCCceeECCcc-CCCC-CC-----CCccccCCCCCeEEEEEecCCCceeeEEccCCCCchh
Confidence 578999999999997652 3322 1111 11 011111233433 44455 4899999776433
Q ss_pred -CCCCCCeEEEEeeCCC
Q 043552 116 -HCLGGMRFSIDVKENP 131 (154)
Q Consensus 116 -HC~~GmKl~I~V~~~~ 131 (154)
+...|+...+.|..+.
T Consensus 151 ~qv~~GL~G~lII~d~~ 167 (471)
T PRK10883 151 QHVYNGLAGMWLVEDEV 167 (471)
T ss_pred hhHhcCCeEEEEEeCCc
Confidence 5567999999998653
No 42
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=56.89 E-value=72 Score=25.89 Aligned_cols=31 Identities=10% Similarity=0.211 Sum_probs=25.6
Q ss_pred eEEccCCceEEEEcCCCCCCCCC---CeEEEEeeCC
Q 043552 98 QVTLTEAKKYWFICNVAGHCLGG---MRFSIDVKEN 130 (154)
Q Consensus 98 ~v~l~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 130 (154)
.++.+++|.++..|+ .-|..| |++.|.|.+.
T Consensus 183 ~~~~~~~g~y~~~C~--e~CG~~H~~M~~~v~v~~~ 216 (228)
T MTH00140 183 SFEPKRPGVFYGQCS--EICGANHSFMPIVVEAVPL 216 (228)
T ss_pred EEEeCCCEEEEEECc--cccCcCcCCCeEEEEEECH
Confidence 466789999999999 589875 8988888764
No 43
>TIGR02228 sigpep_I_arch signal peptidase I, archaeal type. This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.
Probab=55.93 E-value=40 Score=25.95 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=18.5
Q ss_pred ceeEeCCEEEEEEcCC----cccEEEECc
Q 043552 52 YNYSIGDVLVFKYTEG----QHNVYEVTQ 76 (154)
Q Consensus 52 ~~f~vGDtLvF~y~~~----~HsV~~V~~ 76 (154)
..++.||.++|+.+.+ -|.|..+.+
T Consensus 59 ~~~~~GDIVvf~~~~~~~~iihRVi~v~~ 87 (158)
T TIGR02228 59 NDIQVGDVITYKSPGFNTPVTHRVIEINN 87 (158)
T ss_pred CCCCCCCEEEEEECCCCccEEEEEEEEEC
Confidence 4789999999998764 466666643
No 44
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=52.73 E-value=50 Score=30.80 Aligned_cols=86 Identities=16% Similarity=0.306 Sum_probs=53.2
Q ss_pred CCCCC-CCccccCCceeEeCCEEEEEEcCC---cccE------EEECccccccccCCCCcccccccCcc---eEEccCCc
Q 043552 39 WNTGA-NFDSWSQQYNYSIGDVLVFKYTEG---QHNV------YEVTQATYRSCVASSGVIGKYESGND---QVTLTEAK 105 (154)
Q Consensus 39 W~~~~-~Y~~Was~~~f~vGDtLvF~y~~~---~HsV------~~V~~~~y~~C~~~~~~~~~~~~G~~---~v~l~~~G 105 (154)
|+++- .|.. ....+++.||.+++.+.+. .|.+ .+|...+-.. ......+ ....|.+ .|..+.+|
T Consensus 488 wtiNG~~~~~-~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~G~~-~~~~dTv-~V~Pg~t~~~~f~ad~pG 564 (587)
T TIGR01480 488 WSFDGEAFGL-KTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQGEF-QVRKHTV-DVPPGGKRSFRVTADALG 564 (587)
T ss_pred EEECCccCCC-CCceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCCCcc-cccCCce-eeCCCCEEEEEEECCCCe
Confidence 87743 3443 2357899999999999865 3433 2332211000 0000011 1123433 56778999
Q ss_pred eEEEEcCCCCCCCCCCeEEEEe
Q 043552 106 KYWFICNVAGHCLGGMRFSIDV 127 (154)
Q Consensus 106 ~~YFic~v~~HC~~GmKl~I~V 127 (154)
+++|=|-...|=+.||--.+.|
T Consensus 565 ~w~~HCH~l~H~~~GM~~~~~v 586 (587)
T TIGR01480 565 RWAYHCHMLLHMEAGMFREVTV 586 (587)
T ss_pred EEEEcCCCHHHHhCcCcEEEEe
Confidence 9999999999999999888776
No 45
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=50.84 E-value=29 Score=19.65 Aligned_cols=26 Identities=12% Similarity=0.148 Sum_probs=21.9
Q ss_pred ceEEccCCceEEEEcCCCCCCCCCCe
Q 043552 97 DQVTLTEAKKYWFICNVAGHCLGGMR 122 (154)
Q Consensus 97 ~~v~l~~~G~~YFic~v~~HC~~GmK 122 (154)
.+..++..|..||=+++...|..|+.
T Consensus 2 ~VWav~~~G~v~~R~Gis~~~P~G~~ 27 (32)
T PF06462_consen 2 QVWAVTSDGSVYFRTGISPSNPEGTS 27 (32)
T ss_pred eEEEEcCCCCEEEECcCCCCCCCCCC
Confidence 35677888999999999999999974
No 46
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=49.71 E-value=17 Score=26.40 Aligned_cols=11 Identities=9% Similarity=0.712 Sum_probs=8.0
Q ss_pred CCCCCccccCC
Q 043552 41 TGANFDSWSQQ 51 (154)
Q Consensus 41 ~~~~Y~~Was~ 51 (154)
..++|++|.+.
T Consensus 47 i~p~Y~PWf~P 57 (100)
T PRK02898 47 IAPDYEPWFEP 57 (100)
T ss_pred hCCCCcccccc
Confidence 35689999754
No 47
>COG5661 Predicted secreted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=47.99 E-value=25 Score=28.52 Aligned_cols=55 Identities=16% Similarity=0.401 Sum_probs=34.7
Q ss_pred cCcceEEccCCceEEEEcCCCCCCCCCCeEEEEeeCCCCCccccccCCC--Ccccccccee
Q 043552 94 SGNDQVTLTEAKKYWFICNVAGHCLGGMRFSIDVKENPTLIQQQLQHQP--HHQKFWNHLI 152 (154)
Q Consensus 94 ~G~~~v~l~~~G~~YFic~v~~HC~~GmKl~I~V~~~~~~~~~~~~~~~--~~~~~~~~~~ 152 (154)
.|.+.+.++ |.+-|.+. .+.|+-| +..||+..--.++.=+.++++ -....|+||.
T Consensus 66 pGaTqi~f~--~~~~y~~~-~g~C~v~-~a~v~l~~~v~LPrwk~rr~a~pElalvwdtll 122 (210)
T COG5661 66 PGATQIKFG--GQVTYVST-AGQCQVG-DAKVNLNVKVILPRWKPRRKADPELALVWDTLL 122 (210)
T ss_pred CCceEEEec--cEEEEEec-CCceeee-eEEEEEEEEEEccCCCCcCCCCHhHHHHHHHHH
Confidence 466667666 55555555 5679988 566666665556555555554 3467898874
No 48
>PRK09723 putative fimbrial-like adhesin protein; Provisional
Probab=47.94 E-value=1.8e+02 Score=26.24 Aligned_cols=14 Identities=21% Similarity=0.114 Sum_probs=10.1
Q ss_pred ccceeEEEecCCCC
Q 043552 25 GIKSEVYTVGGDEQ 38 (154)
Q Consensus 25 ~a~a~~~~VGg~~G 38 (154)
.+....+.||+..|
T Consensus 24 ~~~~~~~~vg~~~~ 37 (421)
T PRK09723 24 TDDNVSYIVGNYYG 37 (421)
T ss_pred ccCceEEEEccccc
Confidence 45577899998654
No 49
>PF02553 CbiN: Cobalt transport protein component CbiN; InterPro: IPR003705 The cobalt transport protein CbiN is part of the active cobalt transport system involved in uptake of cobalt in to the cell involved with cobalamin biosynthesis (vitamin B12). It has been suggested that CbiN may function as the periplasmic binding protein component of the active cobalt transport system [].; GO: 0015087 cobalt ion transmembrane transporter activity, 0006824 cobalt ion transport, 0009236 cobalamin biosynthetic process, 0016020 membrane
Probab=47.76 E-value=24 Score=24.26 Aligned_cols=11 Identities=9% Similarity=0.700 Sum_probs=8.4
Q ss_pred CCCCCccccCC
Q 043552 41 TGANFDSWSQQ 51 (154)
Q Consensus 41 ~~~~Y~~Was~ 51 (154)
.+++|.+|.+.
T Consensus 45 ~~p~Y~PWf~p 55 (74)
T PF02553_consen 45 IDPDYEPWFEP 55 (74)
T ss_pred hCCCCCccccc
Confidence 35789999765
No 50
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=46.59 E-value=78 Score=28.90 Aligned_cols=84 Identities=13% Similarity=0.103 Sum_probs=0.0
Q ss_pred ceeEeCCEEEEEEcCC--------cccEEEECccccc-cccCCCCcccccccCcceEEc-cCCceEEEEcCCCCCCCCCC
Q 043552 52 YNYSIGDVLVFKYTEG--------QHNVYEVTQATYR-SCVASSGVIGKYESGNDQVTL-TEAKKYWFICNVAGHCLGGM 121 (154)
Q Consensus 52 ~~f~vGDtLvF~y~~~--------~HsV~~V~~~~y~-~C~~~~~~~~~~~~G~~~v~l-~~~G~~YFic~v~~HC~~Gm 121 (154)
++++.||+|+.+..+. -|.+.+....-.| .=..+.-++..-.+=.-.+++ +.+|++||=|-...... ||
T Consensus 36 i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~~-Gl 114 (539)
T TIGR03389 36 LYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQCPIQPGQSYVYNFTITGQRGTLWWHAHISWLRA-TV 114 (539)
T ss_pred EEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccCCcCCCCeEEEEEEecCCCeeEEEecCchhhhc-cc
Q ss_pred eEEEEeeCCCCCccc
Q 043552 122 RFSIDVKENPTLIQQ 136 (154)
Q Consensus 122 Kl~I~V~~~~~~~~~ 136 (154)
...|.|..+.....+
T Consensus 115 ~G~lIV~~~~~~~~~ 129 (539)
T TIGR03389 115 YGAIVILPKPGVPYP 129 (539)
T ss_pred eEEEEEcCCCCCCCC
No 51
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=45.59 E-value=35 Score=26.80 Aligned_cols=31 Identities=10% Similarity=0.192 Sum_probs=24.0
Q ss_pred eEEccCCceEEEEcCCCCCCCC---CCeEEEEeeCC
Q 043552 98 QVTLTEAKKYWFICNVAGHCLG---GMRFSIDVKEN 130 (154)
Q Consensus 98 ~v~l~~~G~~YFic~v~~HC~~---GmKl~I~V~~~ 130 (154)
.+..+++|.+|..|+ .-|.. .|.+.|.|.+.
T Consensus 116 ~~~~~~~G~y~gqCs--ElCG~gHs~M~~~V~vvs~ 149 (162)
T PTZ00047 116 NTFILREGVFYGQCS--EMCGTLHGFMPIVVEAVSP 149 (162)
T ss_pred EEecCCCeEEEEEcc--hhcCcCccCceEEEEEeCH
Confidence 356789999999999 57875 48888877653
No 52
>smart00495 ChtBD3 Chitin-binding domain type 3.
Probab=43.71 E-value=17 Score=21.28 Aligned_cols=18 Identities=28% Similarity=0.672 Sum_probs=14.3
Q ss_pred CccccCCceeEeCCEEEE
Q 043552 45 FDSWSQQYNYSIGDVLVF 62 (154)
Q Consensus 45 Y~~Was~~~f~vGDtLvF 62 (154)
|..|.++..-..||++.+
T Consensus 1 ~~~W~~~~~Y~~Gd~V~~ 18 (41)
T smart00495 1 APAWQAGTVYTAGDVVSY 18 (41)
T ss_pred CCccCCCCcCcCCCEEEE
Confidence 467888888888999876
No 53
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=43.44 E-value=13 Score=27.25 Aligned_cols=15 Identities=20% Similarity=0.492 Sum_probs=12.4
Q ss_pred ceeEeCCEEEEEEcC
Q 043552 52 YNYSIGDVLVFKYTE 66 (154)
Q Consensus 52 ~~f~vGDtLvF~y~~ 66 (154)
+.|++||+|+|+--.
T Consensus 30 ~~ikvGD~I~f~~~~ 44 (109)
T cd06555 30 QQIKVGDKILFNDLD 44 (109)
T ss_pred hcCCCCCEEEEEEcC
Confidence 589999999996643
No 54
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=42.55 E-value=41 Score=27.35 Aligned_cols=31 Identities=10% Similarity=0.224 Sum_probs=25.0
Q ss_pred eEEccCCceEEEEcCCCCCCCCC---CeEEEEeeCC
Q 043552 98 QVTLTEAKKYWFICNVAGHCLGG---MRFSIDVKEN 130 (154)
Q Consensus 98 ~v~l~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 130 (154)
.++.+++|.+|..|+ .-|..| |.+.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~Cs--E~CG~~Hs~M~~~v~vv~~ 216 (225)
T MTH00168 183 AFLSSRPGSFYGQCS--EICGANHSFMPIVVEFVPW 216 (225)
T ss_pred EEEcCCCEEEEEEcc--cccCcCcCCCeEEEEEeCH
Confidence 467789999999999 588875 8888877653
No 55
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=42.22 E-value=1.1e+02 Score=24.95 Aligned_cols=31 Identities=10% Similarity=0.169 Sum_probs=24.3
Q ss_pred eEEccCCceEEEEcCCCCCCCC---CCeEEEEeeCC
Q 043552 98 QVTLTEAKKYWFICNVAGHCLG---GMRFSIDVKEN 130 (154)
Q Consensus 98 ~v~l~~~G~~YFic~v~~HC~~---GmKl~I~V~~~ 130 (154)
.+..+++|.+|..|+ .-|.. .|++.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~C~--e~CG~~H~~M~~~v~vv~~ 216 (230)
T MTH00129 183 AFIASRPGVFYGQCS--EICGANHSFMPIVVEAVPL 216 (230)
T ss_pred EEEeCCceEEEEECh--hhccccccCCcEEEEEECH
Confidence 456789999999999 47875 48888887653
No 56
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=41.94 E-value=38 Score=27.65 Aligned_cols=31 Identities=19% Similarity=0.170 Sum_probs=25.6
Q ss_pred eEEccCCceEEEEcCCCCCCCCC---CeEEEEeeCC
Q 043552 98 QVTLTEAKKYWFICNVAGHCLGG---MRFSIDVKEN 130 (154)
Q Consensus 98 ~v~l~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 130 (154)
.++.+++|.|+-.|+ .-|..| |++.|.|.+.
T Consensus 182 ~~~~~~~G~y~g~Ca--E~CG~~Ha~M~~~V~v~~~ 215 (226)
T TIGR01433 182 HLIANEPGVYDGISA--NYSGPGFSGMKFKAIATDR 215 (226)
T ss_pred EEEeCCCEEEEEEch--hhcCcCccCCeEEEEEECH
Confidence 467899999999999 688864 8888888753
No 57
>PLN02792 oxidoreductase
Probab=41.56 E-value=47 Score=30.59 Aligned_cols=83 Identities=11% Similarity=0.129 Sum_probs=52.7
Q ss_pred eeEeCCEEEEEEcCC---cc-------cEEEE--Cccccccc-----cCCCCcc----cccccCcc--eEEccCCceEEE
Q 043552 53 NYSIGDVLVFKYTEG---QH-------NVYEV--TQATYRSC-----VASSGVI----GKYESGND--QVTLTEAKKYWF 109 (154)
Q Consensus 53 ~f~vGDtLvF~y~~~---~H-------sV~~V--~~~~y~~C-----~~~~~~~----~~~~~G~~--~v~l~~~G~~YF 109 (154)
.+.-|++++.-+.+. .| +...| ....|+.= |..+++. .....|-. ++..|-||...|
T Consensus 406 ~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~ 485 (536)
T PLN02792 406 GAHHNAFLEIIFQNREKIVQSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALDNVGMWNL 485 (536)
T ss_pred EcCCCCEEEEEEECCCCCCCCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEeeCCEEEee
Confidence 456677776666642 23 55555 23455421 1222221 12233433 577889999999
Q ss_pred EcCCCCCCCCCCeEEEEeeCCCCCcc
Q 043552 110 ICNVAGHCLGGMRFSIDVKENPTLIQ 135 (154)
Q Consensus 110 ic~v~~HC~~GmKl~I~V~~~~~~~~ 135 (154)
=|-...|=..||.+.+.|.+...+.+
T Consensus 486 HCh~~~h~~~Gm~~~~~v~~~~~~~~ 511 (536)
T PLN02792 486 RSQFWARQYLGQQFYLRVYSPTHSLK 511 (536)
T ss_pred eEcchhccccceEEEEEEccCCCccc
Confidence 99999999999999999997766543
No 58
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=41.48 E-value=41 Score=27.44 Aligned_cols=31 Identities=13% Similarity=0.267 Sum_probs=25.0
Q ss_pred eEEccCCceEEEEcCCCCCCCCC---CeEEEEeeCC
Q 043552 98 QVTLTEAKKYWFICNVAGHCLGG---MRFSIDVKEN 130 (154)
Q Consensus 98 ~v~l~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 130 (154)
.++.+++|.||..|+ .-|..| |++.|.|.+.
T Consensus 183 ~~~~~~~G~y~g~Cs--e~CG~~H~~M~~~v~vv~~ 216 (227)
T MTH00154 183 NFLINRPGLFFGQCS--EICGANHSFMPIVIESVSV 216 (227)
T ss_pred EEEEcCceEEEEEee--chhCcCccCCeEEEEEeCH
Confidence 467789999999999 588875 8888877653
No 59
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=41.04 E-value=42 Score=27.22 Aligned_cols=31 Identities=10% Similarity=0.261 Sum_probs=25.2
Q ss_pred eEEccCCceEEEEcCCCCCCCCC---CeEEEEeeCC
Q 043552 98 QVTLTEAKKYWFICNVAGHCLGG---MRFSIDVKEN 130 (154)
Q Consensus 98 ~v~l~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 130 (154)
.++.+++|.||..|+ .-|..| |.+.|.|.+.
T Consensus 183 ~~~~~~~G~y~g~Cs--E~CG~~Hs~M~~~v~vv~~ 216 (226)
T MTH00139 183 GFFINRPGVFYGQCS--EICGANHSFMPIVVEAISP 216 (226)
T ss_pred EEEcCCCEEEEEECh--hhcCcCcCCCeEEEEEeCH
Confidence 467789999999999 688875 8888887653
No 60
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=40.65 E-value=34 Score=27.53 Aligned_cols=31 Identities=10% Similarity=0.080 Sum_probs=26.1
Q ss_pred eEEccCCceEEEEcCCCCCCCCC---CeEEEEeeCC
Q 043552 98 QVTLTEAKKYWFICNVAGHCLGG---MRFSIDVKEN 130 (154)
Q Consensus 98 ~v~l~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 130 (154)
.++.+++|.|+-.|+ .-|..| |++.|.|.+.
T Consensus 173 ~~~~~~~G~y~g~Ca--e~CG~~Hs~M~~~v~v~~~ 206 (217)
T TIGR01432 173 YLQADQVGTYRGRNA--NFNGEGFADQTFDVNAVSE 206 (217)
T ss_pred EEEeCCCEEEEEEeh--hhcCccccCCeEEEEEeCH
Confidence 577889999999999 589864 9999988764
No 61
>PF09792 But2: Ubiquitin 3 binding protein But2 C-terminal domain; InterPro: IPR018620 This entry represents a presumed C-terminal domain of ubiquitin 3 binding proteins (But2). But2 is conserved in yeasts. It binds to Uba3 and is involved in the NEDD8 signalling pathway [].
Probab=39.60 E-value=1.1e+02 Score=23.26 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=26.0
Q ss_pred eEEccCCceEEEEcCCCCCCCCCCeEEEEeeCCCC
Q 043552 98 QVTLTEAKKYWFICNVAGHCLGGMRFSIDVKENPT 132 (154)
Q Consensus 98 ~v~l~~~G~~YFic~v~~HC~~GmKl~I~V~~~~~ 132 (154)
++++.. |..|-|.+ ..|..||++...+.....
T Consensus 100 ~~~~~p-G~~y~i~~--f~Cp~g~~v~ye~~~~g~ 131 (143)
T PF09792_consen 100 TFTVSP-GNSYVINT--FPCPAGQAVSYEMSSAGD 131 (143)
T ss_pred ceEECC-CCceEeCc--EeCCCCCEEEEEEEecCC
Confidence 567776 99999986 799999999888876644
No 62
>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)
Probab=39.47 E-value=19 Score=24.66 Aligned_cols=13 Identities=31% Similarity=0.927 Sum_probs=11.0
Q ss_pred CceeEeCCEEEEE
Q 043552 51 QYNYSIGDVLVFK 63 (154)
Q Consensus 51 ~~~f~vGDtLvF~ 63 (154)
+..|+|||.|.++
T Consensus 26 DRdf~VGD~L~L~ 38 (72)
T PF12961_consen 26 DRDFQVGDILVLR 38 (72)
T ss_pred CCCCCCCCEEEEE
Confidence 5789999999874
No 63
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=39.43 E-value=48 Score=27.08 Aligned_cols=31 Identities=16% Similarity=0.289 Sum_probs=24.1
Q ss_pred eEEccCCceEEEEcCCCCCCCCC---CeEEEEeeCC
Q 043552 98 QVTLTEAKKYWFICNVAGHCLGG---MRFSIDVKEN 130 (154)
Q Consensus 98 ~v~l~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 130 (154)
.++.+++|.+|..|+ .-|..| |.+.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~Cs--e~CG~~H~~M~~~v~v~~~ 216 (227)
T MTH00098 183 TLMSTRPGLYYGQCS--EICGSNHSFMPIVLELVPL 216 (227)
T ss_pred EEecCCcEEEEEECc--cccCcCcCCceEEEEEeCH
Confidence 466789999999999 478765 7777777653
No 64
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=39.32 E-value=50 Score=26.95 Aligned_cols=31 Identities=13% Similarity=0.252 Sum_probs=25.0
Q ss_pred eEEccCCceEEEEcCCCCCCCCC---CeEEEEeeCC
Q 043552 98 QVTLTEAKKYWFICNVAGHCLGG---MRFSIDVKEN 130 (154)
Q Consensus 98 ~v~l~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 130 (154)
.++.+++|.+|..|+ .-|..| |.+.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~Cs--e~CG~~Hs~M~~~v~vv~~ 216 (229)
T MTH00038 183 TFFISRTGLFYGQCS--EICGANHSFMPIVIESVPF 216 (229)
T ss_pred EEEcCCCEEEEEEcc--cccCcCcCCCeEEEEEeCH
Confidence 467789999999999 588875 8888887653
No 65
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=38.86 E-value=47 Score=27.08 Aligned_cols=31 Identities=13% Similarity=0.231 Sum_probs=24.6
Q ss_pred eEEccCCceEEEEcCCCCCCCCC---CeEEEEeeCC
Q 043552 98 QVTLTEAKKYWFICNVAGHCLGG---MRFSIDVKEN 130 (154)
Q Consensus 98 ~v~l~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 130 (154)
.++.+++|.+|-.|+ .-|..| |.+.|.|.+.
T Consensus 183 ~~~~~~~G~y~g~Cs--E~CG~~Hs~M~~~v~vv~~ 216 (227)
T MTH00117 183 SFITTRPGVFYGQCS--EICGANHSFMPIVVESVPL 216 (227)
T ss_pred EEEEcccceEEEEec--cccccCccCCeEEEEEcCH
Confidence 467789999999999 588864 8888877653
No 66
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=38.56 E-value=22 Score=24.01 Aligned_cols=15 Identities=27% Similarity=0.607 Sum_probs=13.0
Q ss_pred eeEeCCEEEEEEcCC
Q 043552 53 NYSIGDVLVFKYTEG 67 (154)
Q Consensus 53 ~f~vGDtLvF~y~~~ 67 (154)
++++||.|.|.+...
T Consensus 2 ~~~~Ge~v~~~~~~~ 16 (83)
T PF14326_consen 2 VYRVGERVRFRVTSN 16 (83)
T ss_pred cccCCCEEEEEEEeC
Confidence 588999999999864
No 67
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=38.47 E-value=99 Score=23.71 Aligned_cols=35 Identities=20% Similarity=0.379 Sum_probs=27.0
Q ss_pred ceeEeCCEEEEEEc-----CCcccEEEECccccccccCCC
Q 043552 52 YNYSIGDVLVFKYT-----EGQHNVYEVTQATYRSCVASS 86 (154)
Q Consensus 52 ~~f~vGDtLvF~y~-----~~~HsV~~V~~~~y~~C~~~~ 86 (154)
...+.||++++.-. +.-|+.+.++....-.|+...
T Consensus 74 ~~~q~GDI~I~g~~g~S~G~~GHtgif~~~~~iIhc~y~~ 113 (145)
T PF05382_consen 74 WNLQRGDIFIWGRRGNSAGAGGHTGIFMDNDTIIHCNYGA 113 (145)
T ss_pred ccccCCCEEEEcCCCCCCCCCCeEEEEeCCCcEEEecCCC
Confidence 36899999997554 235998888888888998754
No 68
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=37.77 E-value=1.2e+02 Score=24.76 Aligned_cols=31 Identities=13% Similarity=0.224 Sum_probs=24.6
Q ss_pred eEEccCCceEEEEcCCCCCCCCC---CeEEEEeeCC
Q 043552 98 QVTLTEAKKYWFICNVAGHCLGG---MRFSIDVKEN 130 (154)
Q Consensus 98 ~v~l~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 130 (154)
.++.+++|.+|..|+ .-|..| |.+.|.|.+.
T Consensus 187 ~~~~~~~G~y~g~Cs--e~CG~~Hs~M~i~v~vv~~ 220 (234)
T MTH00051 187 SFFIKRPGVFYGQCS--EICGANHSFMPIVIEGVSL 220 (234)
T ss_pred EEEeCCCEEEEEECh--hhcCcccccCeeEEEEECH
Confidence 467889999999999 588865 8888877653
No 69
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=37.17 E-value=53 Score=27.00 Aligned_cols=31 Identities=13% Similarity=0.248 Sum_probs=25.2
Q ss_pred eEEccCCceEEEEcCCCCCCCCC---CeEEEEeeCC
Q 043552 98 QVTLTEAKKYWFICNVAGHCLGG---MRFSIDVKEN 130 (154)
Q Consensus 98 ~v~l~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 130 (154)
.++.+++|.++..|+ .-|..| |.+.|.|.+.
T Consensus 194 ~~~~~~~G~y~g~C~--e~CG~~Hs~M~~~v~vv~~ 227 (240)
T MTH00023 194 GFFIKRPGVFYGQCS--EICGANHSFMPIVIEAVSL 227 (240)
T ss_pred EEEcCCCEEEEEEch--hhcCcCccCCeEEEEEECH
Confidence 467789999999999 688875 8888887653
No 70
>PRK10965 multicopper oxidase; Provisional
Probab=36.41 E-value=1.6e+02 Score=27.01 Aligned_cols=76 Identities=13% Similarity=0.180 Sum_probs=46.3
Q ss_pred CCceeEeCCEEEEEEcCCc--------ccEEEECccccccccCCCCcccccccCcc---eEEccC-CceEEEEcCC----
Q 043552 50 QQYNYSIGDVLVFKYTEGQ--------HNVYEVTQATYRSCVASSGVIGKYESGND---QVTLTE-AKKYWFICNV---- 113 (154)
Q Consensus 50 s~~~f~vGDtLvF~y~~~~--------HsV~~V~~~~y~~C~~~~~~~~~~~~G~~---~v~l~~-~G~~YFic~v---- 113 (154)
..++++.||.|+.++.+.- |.+..-. ..|. . +......|.+ .++++. +|++||=+-.
T Consensus 77 PtIr~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~~--~~DG-~----pq~~I~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t 149 (523)
T PRK10965 77 PAVRLQRGKAVTVDITNQLPEETTLHWHGLEVPG--EVDG-G----PQGIIAPGGKRTVTFTVDQPAATCWFHPHQHGKT 149 (523)
T ss_pred ceEEEECCCEEEEEEEECCCCCccEEcccccCCC--ccCC-C----CCCCCCCCCEEEEEeccCCCCceEEEecCCCCCc
Confidence 3578899999999997651 3332111 1121 0 1111233433 567774 6999998875
Q ss_pred CCCCCCCCeEEEEeeCCCC
Q 043552 114 AGHCLGGMRFSIDVKENPT 132 (154)
Q Consensus 114 ~~HC~~GmKl~I~V~~~~~ 132 (154)
..+=..|+-..+.|.....
T Consensus 150 ~~Qv~~GL~G~lIV~d~~~ 168 (523)
T PRK10965 150 GRQVAMGLAGLVLIEDDES 168 (523)
T ss_pred HHHHhCcCeEEEEEcCccc
Confidence 3455679999999987643
No 71
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=34.44 E-value=60 Score=26.47 Aligned_cols=31 Identities=16% Similarity=0.375 Sum_probs=24.6
Q ss_pred eEEccCCceEEEEcCCCCCCCCC---CeEEEEeeCC
Q 043552 98 QVTLTEAKKYWFICNVAGHCLGG---MRFSIDVKEN 130 (154)
Q Consensus 98 ~v~l~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 130 (154)
.++.+++|.+|..|+ .-|..| |.+.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~Cs--e~CG~~Hs~M~~~v~vv~~ 216 (228)
T MTH00008 183 GFTITRPGVFYGQCS--EICGANHSFMPIVLEAVDT 216 (228)
T ss_pred EEEeCCCEEEEEECh--hhcCcCccCceeEEEEECH
Confidence 466789999999999 588764 8888877653
No 72
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=33.40 E-value=82 Score=29.40 Aligned_cols=64 Identities=13% Similarity=0.088 Sum_probs=44.7
Q ss_pred cCCceeEeCCEEEEEEcCCcccEEEECccccccccCCC-C--ccc-ccccCcc-eEEccCCceEEEEcC
Q 043552 49 SQQYNYSIGDVLVFKYTEGQHNVYEVTQATYRSCVASS-G--VIG-KYESGND-QVTLTEAKKYWFICN 112 (154)
Q Consensus 49 as~~~f~vGDtLvF~y~~~~HsV~~V~~~~y~~C~~~~-~--~~~-~~~~G~~-~v~l~~~G~~YFic~ 112 (154)
.+.++|-.-|.++|+|++....++.+.+.+.|.-+.+- + .+- .-..|++ +|.|.+.||.|=+|=
T Consensus 210 ~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W 278 (566)
T KOG2315|consen 210 VANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTW 278 (566)
T ss_pred hhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEE
Confidence 45789999999999999887888777777777655542 1 110 0123655 789999999876543
No 73
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=32.47 E-value=76 Score=21.69 Aligned_cols=38 Identities=29% Similarity=0.660 Sum_probs=29.5
Q ss_pred eEEEecCCC---CCCCC-----------CCCccccCCceeEeCCEEEEEEcC
Q 043552 29 EVYTVGGDE---QWNTG-----------ANFDSWSQQYNYSIGDVLVFKYTE 66 (154)
Q Consensus 29 ~~~~VGg~~---GW~~~-----------~~Y~~Was~~~f~vGDtLvF~y~~ 66 (154)
..+++|+.. .|... .+|..|.....+..|..++|+|--
T Consensus 17 ~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 17 SVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEE
Confidence 458899864 49851 157899998889999999999974
No 74
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=30.68 E-value=72 Score=26.00 Aligned_cols=31 Identities=13% Similarity=0.221 Sum_probs=24.3
Q ss_pred eEEccCCceEEEEcCCCCCCCC---CCeEEEEeeCC
Q 043552 98 QVTLTEAKKYWFICNVAGHCLG---GMRFSIDVKEN 130 (154)
Q Consensus 98 ~v~l~~~G~~YFic~v~~HC~~---GmKl~I~V~~~ 130 (154)
.+..+++|.+|..|+ .-|.. .|.+.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~C~--e~CG~~Hs~M~~~v~vv~~ 216 (228)
T MTH00076 183 SFIASRPGVYYGQCS--EICGANHSFMPIVVEATPL 216 (228)
T ss_pred EEEeCCcEEEEEECh--hhcCccccCCceEEEEeCH
Confidence 466789999999999 47876 48888877653
No 75
>PRK10861 signal peptidase I; Provisional
Probab=30.22 E-value=1.4e+02 Score=25.79 Aligned_cols=15 Identities=47% Similarity=0.735 Sum_probs=12.3
Q ss_pred ceeEeCCEEEEEEcC
Q 043552 52 YNYSIGDVLVFKYTE 66 (154)
Q Consensus 52 ~~f~vGDtLvF~y~~ 66 (154)
...+-||+++|+++.
T Consensus 124 ~~p~RGDIVVF~~P~ 138 (324)
T PRK10861 124 GHPKRGDIVVFKYPE 138 (324)
T ss_pred CCCCCCCEEEEecCC
Confidence 456889999999875
No 76
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.93 E-value=97 Score=28.88 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=33.2
Q ss_pred eEEccCCceEEEEcCCCCCCCCCCeEEEEeeCCCCCc
Q 043552 98 QVTLTEAKKYWFICNVAGHCLGGMRFSIDVKENPTLI 134 (154)
Q Consensus 98 ~v~l~~~G~~YFic~v~~HC~~GmKl~I~V~~~~~~~ 134 (154)
.+.+|-||...|=|-+..|=..||.+...|.+...+.
T Consensus 506 rf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~ 542 (563)
T KOG1263|consen 506 RFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEESL 542 (563)
T ss_pred EEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCccC
Confidence 5678899999999999999999999999999887763
No 77
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=28.71 E-value=91 Score=26.14 Aligned_cols=31 Identities=10% Similarity=0.232 Sum_probs=24.9
Q ss_pred eEEccCCceEEEEcCCCCCCCCC---CeEEEEeeCC
Q 043552 98 QVTLTEAKKYWFICNVAGHCLGG---MRFSIDVKEN 130 (154)
Q Consensus 98 ~v~l~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 130 (154)
.++.+++|.+|-.|+ .-|..| |.+.|.|.+.
T Consensus 217 ~~~~~~~G~y~g~Cs--E~CG~~Hs~Mpi~v~vv~~ 250 (262)
T MTH00027 217 GFLIKRPGIFYGQCS--EICGANHSFMPIVVESVSL 250 (262)
T ss_pred EEEcCCcEEEEEEcc--hhcCcCcCCCeEEEEEECH
Confidence 567789999999999 588864 8888887653
No 78
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=28.52 E-value=2.2e+02 Score=26.13 Aligned_cols=82 Identities=12% Similarity=0.029 Sum_probs=0.0
Q ss_pred ceeEeCCEEEEEEcCC---------cccEEEECccccc-cccCCCCcccccccCcceEEcc--CCceEEEEcCCCCCCCC
Q 043552 52 YNYSIGDVLVFKYTEG---------QHNVYEVTQATYR-SCVASSGVIGKYESGNDQVTLT--EAKKYWFICNVAGHCLG 119 (154)
Q Consensus 52 ~~f~vGDtLvF~y~~~---------~HsV~~V~~~~y~-~C~~~~~~~~~~~~G~~~v~l~--~~G~~YFic~v~~HC~~ 119 (154)
++++.||.|+.+..+. -|.+.+-.....| ....+..++..-.+-.-.++++ .+|++||=|-...+-..
T Consensus 41 I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI~PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~~ 120 (538)
T TIGR03390 41 IRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPIPPGHFFDYEIKPEPGDAGSYFYHSHVGFQAVT 120 (538)
T ss_pred EEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCCCCCCcEEEEEEecCCCCeeeEEecCCchhhhc
Q ss_pred CCeEEEEeeCCCCCc
Q 043552 120 GMRFSIDVKENPTLI 134 (154)
Q Consensus 120 GmKl~I~V~~~~~~~ 134 (154)
|...+.|..+...+
T Consensus 121 -l~G~lIV~~~~~~~ 134 (538)
T TIGR03390 121 -AFGPLIVEDCEPPP 134 (538)
T ss_pred -ceeEEEEccCCccC
No 79
>PLN02835 oxidoreductase
Probab=28.42 E-value=1.1e+02 Score=28.17 Aligned_cols=38 Identities=13% Similarity=0.108 Sum_probs=32.7
Q ss_pred eEEccCCceEEEEcCCCCCCCCCCeEEEEeeCCCCCcc
Q 043552 98 QVTLTEAKKYWFICNVAGHCLGGMRFSIDVKENPTLIQ 135 (154)
Q Consensus 98 ~v~l~~~G~~YFic~v~~HC~~GmKl~I~V~~~~~~~~ 135 (154)
.|..|-||...|=|-...|=..||.+.+.|.+......
T Consensus 482 rF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~~~~~~ 519 (539)
T PLN02835 482 LVSLDNQGMWNMRSAIWERQYLGQQFYLRVWNQVHSLA 519 (539)
T ss_pred EEECcCCEEeeeeecchhhhhcccEEEEEEccCCCccc
Confidence 56778899999999999999999999999998765543
No 80
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.
Probab=28.04 E-value=38 Score=22.90 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=11.5
Q ss_pred cCCceeEeCCEEEEEEcCC
Q 043552 49 SQQYNYSIGDVLVFKYTEG 67 (154)
Q Consensus 49 as~~~f~vGDtLvF~y~~~ 67 (154)
+..+.+++||.++|.+...
T Consensus 69 v~~n~L~~GD~~~F~~~~~ 87 (100)
T PF02362_consen 69 VRDNGLKEGDVCVFELIGN 87 (100)
T ss_dssp HHHCT--TT-EEEEEE-SS
T ss_pred HHHcCCCCCCEEEEEEecC
Confidence 3456789999999999853
No 81
>PF11604 CusF_Ec: Copper binding periplasmic protein CusF; InterPro: IPR021647 CusF is a periplasmic protein involved in copper and silver resistance in Escherichia coil. CusF forms a five-stranded beta-barrel OB fold. Cu(I) binds to H36, M47 and M49 which are conserved residues in the protein []. ; PDB: 2L55_A 2VB3_X 1ZEQ_X 2QCP_X 3E6Z_X 2VB2_X.
Probab=27.40 E-value=39 Score=22.37 Aligned_cols=21 Identities=14% Similarity=0.166 Sum_probs=14.3
Q ss_pred cccCCceeEeCCEEEEEEcCC
Q 043552 47 SWSQQYNYSIGDVLVFKYTEG 67 (154)
Q Consensus 47 ~Was~~~f~vGDtLvF~y~~~ 67 (154)
+-+.-..+++||.|.|.+...
T Consensus 36 ~~~~l~~l~~Gd~V~F~~~~~ 56 (70)
T PF11604_consen 36 DPVDLAGLKPGDKVRFTFERT 56 (70)
T ss_dssp TTSEESS-STT-EEEEEEEEE
T ss_pred ChhhhhcCCCCCEEEEEEEEC
Confidence 333446899999999999864
No 82
>PLN02991 oxidoreductase
Probab=26.83 E-value=1.1e+02 Score=28.16 Aligned_cols=39 Identities=15% Similarity=0.174 Sum_probs=32.5
Q ss_pred eEEccCCceEEEEcCCCCCCCCCCeEEEEeeCCCCCccc
Q 043552 98 QVTLTEAKKYWFICNVAGHCLGGMRFSIDVKENPTLIQQ 136 (154)
Q Consensus 98 ~v~l~~~G~~YFic~v~~HC~~GmKl~I~V~~~~~~~~~ 136 (154)
+|..|-||...|=|-..-|=..||.+...|.+...+.++
T Consensus 481 RF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~~~~~~~~~ 519 (543)
T PLN02991 481 YVSLDNVGMWNLRSELWERQYLGQQFYMRVYTTSTSLRD 519 (543)
T ss_pred EEECCCCEEeeeeeCccccccccEEEEEEecCCCCcccc
Confidence 567789999999999977888899999999877766543
No 83
>PF10868 DUF2667: Protein of unknown function (DUF2667); InterPro: IPR022618 This family of proteins with unknown function appears to be restricted to Arabidopsis thaliana.
Probab=26.79 E-value=35 Score=24.32 Aligned_cols=23 Identities=17% Similarity=0.413 Sum_probs=13.2
Q ss_pred CCcccchhhHHHHHHHHHHHHhhc
Q 043552 1 MEDQKVFRFYSFPIIILINYLFFT 24 (154)
Q Consensus 1 m~~~~~~~~~~~~i~~~~~~~~~~ 24 (154)
|+.+|+.-+ +++|++.++.++++
T Consensus 1 m~slk~st~-~ilvvvclsiLLis 23 (90)
T PF10868_consen 1 MGSLKLSTF-VILVVVCLSILLIS 23 (90)
T ss_pred CCceEEEee-ehhHHHHHHHHccc
Confidence 788887744 33344455455544
No 84
>PF00807 Apidaecin: Apidaecin; InterPro: IPR004828 These antibacterial peptides are found in bees. These heat-stable, non-helical peptides are active against a wide range of plant-associated bacteria and some human pathogens []. This family contains a conserved region including the propeptide and apidaecin sequence.; PDB: 4E81_C.
Probab=26.45 E-value=22 Score=19.77 Aligned_cols=9 Identities=33% Similarity=0.586 Sum_probs=0.0
Q ss_pred ccCCCCccc
Q 043552 138 LQHQPHHQK 146 (154)
Q Consensus 138 ~~~~~~~~~ 146 (154)
++.+|||||
T Consensus 18 pqprpphpr 26 (28)
T PF00807_consen 18 PQPRPPHPR 26 (28)
T ss_dssp ---------
T ss_pred CCCCCCCCC
Confidence 345677776
No 85
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=26.29 E-value=1.7e+02 Score=18.08 Aligned_cols=37 Identities=19% Similarity=0.154 Sum_probs=28.1
Q ss_pred cCcceEEccCCceEEEEcCCCCCCCCCCeEEEEeeCCC
Q 043552 94 SGNDQVTLTEAKKYWFICNVAGHCLGGMRFSIDVKENP 131 (154)
Q Consensus 94 ~G~~~v~l~~~G~~YFic~v~~HC~~GmKl~I~V~~~~ 131 (154)
.++..+.||..|.+.-+=..++ |.-||++.++...-.
T Consensus 4 ~~~~aiVlT~dGeF~~ik~~~~-~~vG~eI~~~~~~~~ 40 (56)
T PF12791_consen 4 KKKYAIVLTPDGEFIKIKRKPG-MEVGQEIEFDEKDII 40 (56)
T ss_pred cCCEEEEEcCCCcEEEEeCCCC-CcccCEEEEechhhc
Confidence 3566788898899877766556 999999988875543
No 86
>PLN02354 copper ion binding / oxidoreductase
Probab=26.00 E-value=1.5e+02 Score=27.46 Aligned_cols=38 Identities=11% Similarity=0.020 Sum_probs=32.1
Q ss_pred eEEccCCceEEEEcCCCCCCCCCCeEEEEeeCCCCCcc
Q 043552 98 QVTLTEAKKYWFICNVAGHCLGGMRFSIDVKENPTLIQ 135 (154)
Q Consensus 98 ~v~l~~~G~~YFic~v~~HC~~GmKl~I~V~~~~~~~~ 135 (154)
+|..|-||...|=|-...|=..||.+.+.|.+++...+
T Consensus 489 RF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~~~~~~~~ 526 (552)
T PLN02354 489 LLTFDNAGMWNIRSENWERRYLGQQLYASVLSPERSLR 526 (552)
T ss_pred EEEecCCeEEeeeccccccccccceEEEEEeCCccccC
Confidence 56778999999999998888899999999987765544
No 87
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=25.89 E-value=73 Score=24.29 Aligned_cols=31 Identities=16% Similarity=0.369 Sum_probs=19.3
Q ss_pred EEEecCCCCCCCCCCCcccc-CCceeEeCCEEEEE
Q 043552 30 VYTVGGDEQWNTGANFDSWS-QQYNYSIGDVLVFK 63 (154)
Q Consensus 30 ~~~VGg~~GW~~~~~Y~~Wa-s~~~f~vGDtLvF~ 63 (154)
..+|||..| ..+.+-|- ....|+.||+|.+.
T Consensus 40 ~~kVaD~Tg---sI~isvW~e~~~~~~PGDIirLt 71 (134)
T KOG3416|consen 40 SCKVADETG---SINISVWDEEGCLIQPGDIIRLT 71 (134)
T ss_pred EEEEecccc---eEEEEEecCcCcccCCccEEEec
Confidence 366888766 12333442 24689999998763
No 88
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=25.08 E-value=94 Score=26.84 Aligned_cols=29 Identities=21% Similarity=0.168 Sum_probs=24.3
Q ss_pred eEEccCCceEEEEcCCCCCCCC---CCeEEEEee
Q 043552 98 QVTLTEAKKYWFICNVAGHCLG---GMRFSIDVK 128 (154)
Q Consensus 98 ~v~l~~~G~~YFic~v~~HC~~---GmKl~I~V~ 128 (154)
.++.+++|.|+-.|+ +.|.. .|++.|.|.
T Consensus 194 ~~~a~~~G~Y~G~Ca--EyCG~gHs~M~f~v~v~ 225 (315)
T PRK10525 194 HLIANEPGTYDGISA--SYSGPGFSGMKFKAIAT 225 (315)
T ss_pred EEEcCCCEEEEEECh--hhcCccccCCeEEEEEE
Confidence 467789999999999 68886 499998776
No 89
>PF09953 DUF2187: Uncharacterized protein conserved in bacteria (DUF2187); InterPro: IPR018690 This family consists of various hypothetical bacterial proteins with known function. It includes the uncharacterised YkvS protein from Bacillus subtilis.
Probab=24.94 E-value=41 Score=22.05 Aligned_cols=12 Identities=33% Similarity=0.700 Sum_probs=10.0
Q ss_pred ceeEeCCEEEEE
Q 043552 52 YNYSIGDVLVFK 63 (154)
Q Consensus 52 ~~f~vGDtLvF~ 63 (154)
+.+++||++.|+
T Consensus 2 ~~a~vGdiIefk 13 (57)
T PF09953_consen 2 KKAKVGDIIEFK 13 (57)
T ss_pred cccccCcEEEEc
Confidence 357899999995
No 90
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=24.44 E-value=52 Score=24.57 Aligned_cols=18 Identities=28% Similarity=0.641 Sum_probs=15.4
Q ss_pred ceeEeCCEEEEEEcCCcc
Q 043552 52 YNYSIGDVLVFKYTEGQH 69 (154)
Q Consensus 52 ~~f~vGDtLvF~y~~~~H 69 (154)
..|++||.+.|-++...+
T Consensus 41 ~~f~~GDlvLflpt~~~~ 58 (129)
T PF10377_consen 41 RNFQVGDLVLFLPTRNHN 58 (129)
T ss_pred ecCCCCCEEEEEecCCCC
Confidence 578999999999998655
No 91
>COG3627 PhnJ Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=24.42 E-value=43 Score=27.86 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=21.2
Q ss_pred ceEEccCCceEEEEcCCCCCCCCCC
Q 043552 97 DQVTLTEAKKYWFICNVAGHCLGGM 121 (154)
Q Consensus 97 ~~v~l~~~G~~YFic~v~~HC~~Gm 121 (154)
+.+.+++-|-+-|+|+.-+||+.-+
T Consensus 257 DEvi~DD~G~rmfvCSDTD~C~~r~ 281 (291)
T COG3627 257 DEVVLDDKGGRMFVCSDTDFCEQRR 281 (291)
T ss_pred eeeEEcCCCceEEEecCchHHHhHH
Confidence 4688888899999999999998643
No 92
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=24.19 E-value=1.2e+02 Score=24.82 Aligned_cols=30 Identities=13% Similarity=0.341 Sum_probs=23.4
Q ss_pred eEEccCCceEEEEcCCCCCCCCC---CeEEEEeeC
Q 043552 98 QVTLTEAKKYWFICNVAGHCLGG---MRFSIDVKE 129 (154)
Q Consensus 98 ~v~l~~~G~~YFic~v~~HC~~G---mKl~I~V~~ 129 (154)
.+..+++|.+|-.|+ .-|..| |.+.|.|.+
T Consensus 183 ~~~~~~~G~~~g~Cs--e~CG~~Hs~M~~~v~vv~ 215 (230)
T MTH00185 183 TFIISRPGLYYGQCS--EICGANHSFMPIVVEAVP 215 (230)
T ss_pred EEEeCCcEEEEEEch--hhcCcCcCCCeEEEEEEC
Confidence 356789999999999 578765 777777665
No 93
>PRK14125 cell division suppressor protein YneA; Provisional
Probab=23.60 E-value=38 Score=24.39 Aligned_cols=9 Identities=33% Similarity=0.427 Sum_probs=5.9
Q ss_pred ceeEeCCEE
Q 043552 52 YNYSIGDVL 60 (154)
Q Consensus 52 ~~f~vGDtL 60 (154)
.+++.||+|
T Consensus 39 ~tV~~GDTL 47 (103)
T PRK14125 39 ITVQEGDTL 47 (103)
T ss_pred EEECCCCCH
Confidence 466677776
No 94
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=23.25 E-value=53 Score=29.93 Aligned_cols=13 Identities=15% Similarity=0.284 Sum_probs=6.3
Q ss_pred ccccCCCCccccc
Q 043552 136 QQLQHQPHHQKFW 148 (154)
Q Consensus 136 ~~~~~~~~~~~~~ 148 (154)
||++..|||+-||
T Consensus 237 PPPPP~PPp~~~~ 249 (480)
T KOG2675|consen 237 PPPPPAPPPAPFF 249 (480)
T ss_pred CCCCCCCCCcccc
Confidence 3444445555555
No 95
>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional
Probab=23.07 E-value=1.3e+02 Score=24.74 Aligned_cols=31 Identities=13% Similarity=0.261 Sum_probs=24.9
Q ss_pred eEEccCCceEEEEcCCCCCCCCC---CeEEEEeeCC
Q 043552 98 QVTLTEAKKYWFICNVAGHCLGG---MRFSIDVKEN 130 (154)
Q Consensus 98 ~v~l~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 130 (154)
.++.+++|.+|-.|+ .-|..| |.+.|.|.+.
T Consensus 186 ~~~~~~~G~y~g~Cs--E~CG~~Hs~M~~~v~vv~~ 219 (231)
T MTH00080 186 CYSFPMPGVFYGQCS--EICGANHSFMPIAVEVTLL 219 (231)
T ss_pred EEEEcCceEEEEEeh--hhcCcCccCCEEEEEEECH
Confidence 467789999999999 588864 8888887654
No 96
>PF08980 DUF1883: Domain of unknown function (DUF1883); InterPro: IPR015073 This family consist of hypothetical bacterial proteins. ; PDB: 2B1Y_A.
Probab=22.99 E-value=23 Score=25.48 Aligned_cols=74 Identities=18% Similarity=0.221 Sum_probs=18.0
Q ss_pred ceeEeCCEEEEEEcCCcccEEEECccccc-cccCCCC--cccccccCcceEEccCCceEEEEcCCCCCCCCCC-eEEEEe
Q 043552 52 YNYSIGDVLVFKYTEGQHNVYEVTQATYR-SCVASSG--VIGKYESGNDQVTLTEAKKYWFICNVAGHCLGGM-RFSIDV 127 (154)
Q Consensus 52 ~~f~vGDtLvF~y~~~~HsV~~V~~~~y~-~C~~~~~--~~~~~~~G~~~v~l~~~G~~YFic~v~~HC~~Gm-Kl~I~V 127 (154)
...+.||+++.+-+. .-+|..++++.|. -++.+.- ....+..-+..+++..+|..|.+=. .|+..|- +..|.|
T Consensus 9 ~~~~~Gd~V~V~ls~-~~nV~LMd~~Nf~~y~~g~~~~y~GG~~~~~Pa~i~VP~sG~W~vvID--~~g~~~~~~~si~v 85 (94)
T PF08980_consen 9 GHLKRGDTVVVRLSH-QANVRLMDDSNFQRYKNGRRFKYIGGVAKRSPARITVPYSGHWNVVID--SHGQSGEVEHSISV 85 (94)
T ss_dssp ----TT-------SS-S-------HHHHHHHHHHTT---S-----SSS------SSS----------TTSSS--------
T ss_pred hccCCCCEEEEEeCC-cccEEEcChhHhhhhccCCcceEEeeecccCceEEECCCCceEEEEEE--CCCCcEEEEEEEEe
Confidence 467889999998874 6788888888886 3554321 0122334445788888898887744 5777764 456666
Q ss_pred e
Q 043552 128 K 128 (154)
Q Consensus 128 ~ 128 (154)
.
T Consensus 86 ~ 86 (94)
T PF08980_consen 86 I 86 (94)
T ss_dssp -
T ss_pred c
Confidence 6
No 97
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=22.72 E-value=1.1e+02 Score=20.55 Aligned_cols=36 Identities=31% Similarity=0.739 Sum_probs=26.3
Q ss_pred EEEecCC---CCCCCC-------CCCccccCCceeEeCCEEEEEEc
Q 043552 30 VYTVGGD---EQWNTG-------ANFDSWSQQYNYSIGDVLVFKYT 65 (154)
Q Consensus 30 ~~~VGg~---~GW~~~-------~~Y~~Was~~~f~vGDtLvF~y~ 65 (154)
.+++|+. ..|... .++..|.....+..|+.++|+|-
T Consensus 17 l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l~~~~~~eYKy~ 62 (95)
T cd05808 17 VYVVGNVPELGNWSPANAVALSAATYPVWSGTVDLPAGTAIEYKYI 62 (95)
T ss_pred EEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEeCCCCeEEEEEE
Confidence 4778864 358742 35677987788888999999996
No 98
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=22.68 E-value=46 Score=23.85 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=27.4
Q ss_pred eEEccCCceEEEEcCCCCCCCCCCeEEEEeeC
Q 043552 98 QVTLTEAKKYWFICNVAGHCLGGMRFSIDVKE 129 (154)
Q Consensus 98 ~v~l~~~G~~YFic~v~~HC~~GmKl~I~V~~ 129 (154)
.+..+.+|.+.|=|=...|=..||-..+.|.+
T Consensus 105 ~~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 105 RFRADNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEEETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred EEEeecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 45678999999999999999999999999864
No 99
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=22.28 E-value=91 Score=21.71 Aligned_cols=37 Identities=22% Similarity=0.546 Sum_probs=27.4
Q ss_pred EEEecCCC---CCCCC-------CCCccccCCceeEeCCEEEEEEcC
Q 043552 30 VYTVGGDE---QWNTG-------ANFDSWSQQYNYSIGDVLVFKYTE 66 (154)
Q Consensus 30 ~~~VGg~~---GW~~~-------~~Y~~Was~~~f~vGDtLvF~y~~ 66 (154)
.+++|+.. .|... ..|..|.....+..|..|+|+|-.
T Consensus 18 l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~lp~~~~veyKyv~ 64 (97)
T cd05810 18 VYVVGNVPQLGNWSPADAVKLDPTAYPTWSGSISLPASTNVEWKCLK 64 (97)
T ss_pred EEEEEChHHhCCCChhhcccccCCCCCeEEEEEEcCCCCeEEEEEEE
Confidence 47788753 48741 367779888888999999999953
No 100
>COG5569 Uncharacterized conserved protein [Function unknown]
Probab=22.12 E-value=79 Score=23.14 Aligned_cols=18 Identities=17% Similarity=0.318 Sum_probs=14.0
Q ss_pred cCCceeEeCCEEEEEEcC
Q 043552 49 SQQYNYSIGDVLVFKYTE 66 (154)
Q Consensus 49 as~~~f~vGDtLvF~y~~ 66 (154)
+.-..++.||.+.|.|..
T Consensus 79 a~lsglKeGdkV~fvfer 96 (108)
T COG5569 79 AKLSGLKEGDKVEFVFER 96 (108)
T ss_pred HHhhccccCCcEEEEEEe
Confidence 334567899999999984
No 101
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=21.84 E-value=81 Score=26.12 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=19.3
Q ss_pred cceeEEEecCCCCCCCCCCCccccC
Q 043552 26 IKSEVYTVGGDEQWNTGANFDSWSQ 50 (154)
Q Consensus 26 a~a~~~~VGg~~GW~~~~~Y~~Was 50 (154)
-+-..|..++..||..=+++.-|.+
T Consensus 221 g~~~n~~~~g~~g~e~iP~~dfw~~ 245 (268)
T PF09451_consen 221 GSWYNYNRYGARGFELIPHFDFWRS 245 (268)
T ss_pred hhheeeccCCCCCceecccHhHHHh
Confidence 3567888999999987677777753
No 102
>PF04945 YHS: YHS domain; InterPro: IPR007029 This short presumed domain is about 50 amino acid residues long. It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases, some phenol hydroxylases and in a set of uncharacterised membrane proteins including Q9CNI0 from SWISSPROT. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding, possibly copper ions. This domain is duplicated in some copper transporting ATPases.; PDB: 3U52_B 2INN_A 2INP_B 1T0Q_A 2RDB_A 1T0R_A 2IND_A 1T0S_A 2INC_A 3DHI_A ....
Probab=21.82 E-value=70 Score=19.21 Aligned_cols=23 Identities=17% Similarity=0.564 Sum_probs=13.8
Q ss_pred cCcceEEccCCceEEEEcCCCCCCC
Q 043552 94 SGNDQVTLTEAKKYWFICNVAGHCL 118 (154)
Q Consensus 94 ~G~~~v~l~~~G~~YFic~v~~HC~ 118 (154)
.++......-.|..|++|+ .+|.
T Consensus 11 ~~~~~~~~~y~G~~Y~FCS--~~C~ 33 (47)
T PF04945_consen 11 PGNAAYSVEYNGRTYYFCS--EGCK 33 (47)
T ss_dssp -----EEEEETTEEEEESS--HHHH
T ss_pred ccCccEEEEECCEEEEEcC--HHHH
Confidence 4555677777799999998 3553
No 103
>COG4043 Preprotein translocase subunit Sec61beta [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.21 E-value=41 Score=24.73 Aligned_cols=15 Identities=20% Similarity=0.401 Sum_probs=12.1
Q ss_pred CCceeEeCCEEEEEE
Q 043552 50 QQYNYSIGDVLVFKY 64 (154)
Q Consensus 50 s~~~f~vGDtLvF~y 64 (154)
....+++||+|+|+=
T Consensus 30 krr~ik~GD~IiF~~ 44 (111)
T COG4043 30 KRRQIKPGDKIIFNG 44 (111)
T ss_pred hhcCCCCCCEEEEcC
Confidence 356789999999963
No 104
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=21.15 E-value=69 Score=20.82 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=17.5
Q ss_pred CCccccCCceeEeCCEEEEEEc
Q 043552 44 NFDSWSQQYNYSIGDVLVFKYT 65 (154)
Q Consensus 44 ~Y~~Was~~~f~vGDtLvF~y~ 65 (154)
....++...++++||.|+|...
T Consensus 27 ~~~k~~~~~~~~~Gd~v~ytit 48 (76)
T PF01345_consen 27 SITKTVNPSTANPGDTVTYTIT 48 (76)
T ss_pred EEEEecCCCcccCCCEEEEEEE
Confidence 3456777889999999998765
No 105
>COG1930 CbiN ABC-type cobalt transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=20.80 E-value=94 Score=22.40 Aligned_cols=9 Identities=22% Similarity=0.811 Sum_probs=6.6
Q ss_pred CCCCccccC
Q 043552 42 GANFDSWSQ 50 (154)
Q Consensus 42 ~~~Y~~Was 50 (154)
.+.|.+|-+
T Consensus 46 ~p~YePWF~ 54 (97)
T COG1930 46 KPGYEPWFQ 54 (97)
T ss_pred CCCCCcccc
Confidence 457999954
No 106
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=20.77 E-value=1.1e+02 Score=22.25 Aligned_cols=18 Identities=17% Similarity=0.497 Sum_probs=15.7
Q ss_pred CCceeEeCCEEEEEEcCC
Q 043552 50 QQYNYSIGDVLVFKYTEG 67 (154)
Q Consensus 50 s~~~f~vGDtLvF~y~~~ 67 (154)
+++.+++||.|++.|...
T Consensus 45 pS~~VK~GD~l~i~~~~~ 62 (100)
T COG1188 45 PSKEVKVGDILTIRFGNK 62 (100)
T ss_pred cccccCCCCEEEEEeCCc
Confidence 368999999999999865
Done!