Query 043554
Match_columns 192
No_of_seqs 145 out of 1843
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 10:17:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043554.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043554hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 6E-18 2E-22 117.2 6.1 76 79-155 12-89 (91)
2 1x4j_A Ring finger protein 38; 99.7 1.1E-17 3.7E-22 111.6 3.4 68 88-156 5-73 (75)
3 2ect_A Ring finger protein 126 99.7 1.4E-16 4.8E-21 106.8 7.0 59 102-161 12-70 (78)
4 1iym_A EL5; ring-H2 finger, ub 99.7 8.8E-17 3E-21 100.6 4.6 51 104-154 4-54 (55)
5 2kiz_A E3 ubiquitin-protein li 99.6 2.1E-16 7.4E-21 103.4 6.5 55 102-157 11-65 (69)
6 2ep4_A Ring finger protein 24; 99.6 1.7E-16 5.9E-21 105.3 6.1 56 104-160 14-69 (74)
7 2ecl_A Ring-box protein 2; RNF 99.6 6.4E-16 2.2E-20 104.7 4.7 54 103-156 13-77 (81)
8 2ecm_A Ring finger and CHY zin 99.6 3.3E-15 1.1E-19 93.3 5.3 50 104-154 4-54 (55)
9 1v87_A Deltex protein 2; ring- 99.6 3.4E-15 1.2E-19 107.0 5.8 56 104-160 24-99 (114)
10 3ng2_A RNF4, snurf, ring finge 99.5 3.6E-15 1.2E-19 97.8 3.8 54 104-158 9-66 (71)
11 2ea6_A Ring finger protein 4; 99.5 6.4E-15 2.2E-19 96.0 4.0 52 103-155 13-68 (69)
12 3dpl_R Ring-box protein 1; ubi 99.5 1.3E-14 4.5E-19 103.1 5.4 51 103-154 35-100 (106)
13 2d8s_A Cellular modulator of i 99.5 2.6E-14 8.9E-19 96.5 5.9 56 102-159 12-74 (80)
14 2xeu_A Ring finger protein 4; 99.5 7.3E-15 2.5E-19 94.3 3.0 53 104-157 2-58 (64)
15 2djb_A Polycomb group ring fin 99.5 4.6E-14 1.6E-18 93.1 5.8 56 104-162 14-69 (72)
16 1chc_A Equine herpes virus-1 r 99.5 5.5E-14 1.9E-18 91.5 5.7 49 104-155 4-52 (68)
17 2d8t_A Dactylidin, ring finger 99.5 1.6E-14 5.5E-19 95.1 2.6 52 102-157 12-63 (71)
18 2ecn_A Ring finger protein 141 99.5 2.8E-14 9.6E-19 93.5 3.7 50 104-158 14-63 (70)
19 2ct2_A Tripartite motif protei 99.4 2.3E-13 7.8E-18 92.7 6.3 53 103-156 13-69 (88)
20 4a0k_B E3 ubiquitin-protein li 99.4 2.6E-14 9E-19 103.1 0.5 51 103-154 46-111 (117)
21 2ct0_A Non-SMC element 1 homol 99.4 4E-13 1.4E-17 89.2 5.3 54 104-160 14-69 (74)
22 2csy_A Zinc finger protein 183 99.4 3.1E-13 1.1E-17 91.0 4.7 48 103-154 13-60 (81)
23 2ysl_A Tripartite motif-contai 99.4 5.4E-13 1.8E-17 87.8 5.4 50 104-157 19-71 (73)
24 2yur_A Retinoblastoma-binding 99.4 5.2E-13 1.8E-17 88.5 5.2 51 104-157 14-66 (74)
25 2ecy_A TNF receptor-associated 99.4 3.9E-13 1.3E-17 87.0 4.4 49 104-156 14-63 (66)
26 4ayc_A E3 ubiquitin-protein li 99.3 3.3E-13 1.1E-17 100.0 2.9 47 105-155 53-99 (138)
27 4ap4_A E3 ubiquitin ligase RNF 99.3 5.1E-13 1.7E-17 97.4 3.3 55 104-159 6-64 (133)
28 1t1h_A Gspef-atpub14, armadill 99.3 1.3E-12 4.4E-17 87.2 4.9 49 104-156 7-56 (78)
29 2ecw_A Tripartite motif-contai 99.3 2.9E-12 1E-16 86.3 6.6 49 104-156 18-72 (85)
30 2ecv_A Tripartite motif-contai 99.3 3.7E-12 1.2E-16 85.9 6.6 50 104-157 18-73 (85)
31 1g25_A CDK-activating kinase a 99.3 1.8E-12 6E-17 83.7 4.3 54 104-158 2-58 (65)
32 2ysj_A Tripartite motif-contai 99.3 3.9E-12 1.3E-16 81.5 5.5 42 104-149 19-63 (63)
33 3lrq_A E3 ubiquitin-protein li 99.3 1.2E-12 4.2E-17 91.7 3.4 48 105-156 22-71 (100)
34 2egp_A Tripartite motif-contai 99.3 9.8E-13 3.3E-17 87.8 2.4 49 104-156 11-66 (79)
35 2y43_A E3 ubiquitin-protein li 99.3 2.6E-12 8.9E-17 89.7 3.9 48 105-155 22-69 (99)
36 2ckl_A Polycomb group ring fin 99.3 3.2E-12 1.1E-16 90.6 4.3 50 104-156 14-63 (108)
37 4ap4_A E3 ubiquitin ligase RNF 99.2 2.6E-12 9E-17 93.5 3.1 54 103-157 70-127 (133)
38 2ecj_A Tripartite motif-contai 99.2 5.7E-12 2E-16 79.1 4.2 42 104-149 14-58 (58)
39 3ztg_A E3 ubiquitin-protein li 99.2 9.8E-12 3.4E-16 85.5 5.0 48 104-154 12-61 (92)
40 3fl2_A E3 ubiquitin-protein li 99.2 1.1E-11 3.8E-16 90.0 5.1 47 105-155 52-99 (124)
41 1jm7_A BRCA1, breast cancer ty 99.2 1.7E-11 6E-16 87.0 5.7 49 105-157 21-72 (112)
42 2ckl_B Ubiquitin ligase protei 99.2 1.2E-11 4E-16 94.1 4.2 48 105-155 54-102 (165)
43 1e4u_A Transcriptional repress 99.2 7.1E-11 2.4E-15 79.2 6.5 55 103-158 9-65 (78)
44 1z6u_A NP95-like ring finger p 99.1 2.9E-11 1E-15 90.8 4.4 48 105-156 78-126 (150)
45 3hct_A TNF receptor-associated 99.1 1.7E-11 5.9E-16 88.2 2.2 49 104-156 17-66 (118)
46 1rmd_A RAG1; V(D)J recombinati 99.1 4E-11 1.4E-15 85.9 3.9 49 105-157 23-72 (116)
47 3l11_A E3 ubiquitin-protein li 99.1 1.6E-11 5.5E-16 87.9 1.6 48 104-155 14-62 (115)
48 2vje_A E3 ubiquitin-protein li 99.1 3.4E-11 1.1E-15 77.7 2.9 47 104-154 7-56 (64)
49 1bor_A Transcription factor PM 99.1 4.2E-11 1.4E-15 75.1 3.1 47 103-156 4-50 (56)
50 2kr4_A Ubiquitin conjugation f 99.1 8E-11 2.7E-15 80.1 3.7 49 104-156 13-61 (85)
51 2vje_B MDM4 protein; proto-onc 99.0 6.1E-11 2.1E-15 76.2 2.5 49 104-154 6-55 (63)
52 2kre_A Ubiquitin conjugation f 99.0 1.2E-10 4E-15 81.7 3.9 49 104-156 28-76 (100)
53 1wgm_A Ubiquitin conjugation f 99.0 1.7E-10 5.8E-15 80.6 4.4 49 104-156 21-70 (98)
54 1jm7_B BARD1, BRCA1-associated 99.0 1E-10 3.6E-15 84.0 2.8 45 105-155 22-67 (117)
55 3knv_A TNF receptor-associated 99.0 8.4E-11 2.9E-15 87.4 1.9 48 104-155 30-78 (141)
56 2y1n_A E3 ubiquitin-protein li 99.0 2.3E-10 8E-15 97.6 4.5 48 105-156 332-380 (389)
57 4ic3_A E3 ubiquitin-protein li 98.9 2.7E-10 9.2E-15 75.4 1.4 43 105-155 24-67 (74)
58 3k1l_B Fancl; UBC, ring, RWD, 98.8 6.4E-10 2.2E-14 93.0 1.9 52 103-154 306-372 (381)
59 3hcs_A TNF receptor-associated 98.8 7.8E-10 2.7E-14 84.3 2.2 49 104-156 17-66 (170)
60 2yu4_A E3 SUMO-protein ligase 98.8 1.6E-09 5.4E-14 75.0 3.1 48 104-154 6-62 (94)
61 1wim_A KIAA0161 protein; ring 98.8 2E-09 6.8E-14 74.3 2.9 48 104-152 4-61 (94)
62 2c2l_A CHIP, carboxy terminus 98.8 1.8E-09 6.3E-14 87.6 3.2 49 104-156 207-256 (281)
63 1vyx_A ORF K3, K3RING; zinc-bi 98.8 3.6E-09 1.2E-13 67.2 3.3 47 104-154 5-58 (60)
64 2ea5_A Cell growth regulator w 98.8 8.4E-09 2.9E-13 67.1 5.0 47 103-157 13-60 (68)
65 2ecg_A Baculoviral IAP repeat- 98.7 4.4E-09 1.5E-13 69.6 2.9 44 105-156 25-69 (75)
66 2f42_A STIP1 homology and U-bo 98.6 1.2E-08 4E-13 78.6 2.7 49 104-156 105-154 (179)
67 2yho_A E3 ubiquitin-protein li 98.6 1.2E-08 3.9E-13 68.4 2.0 44 105-156 18-62 (79)
68 3htk_C E3 SUMO-protein ligase 98.5 3.7E-08 1.3E-12 79.7 3.3 50 104-156 180-233 (267)
69 2bay_A PRE-mRNA splicing facto 98.5 3.2E-08 1.1E-12 62.9 2.2 48 106-157 4-52 (61)
70 3t6p_A Baculoviral IAP repeat- 98.4 3.6E-08 1.2E-12 83.3 1.2 44 104-155 294-338 (345)
71 3nw0_A Non-structural maintena 98.3 7.1E-07 2.4E-11 71.6 6.0 53 104-159 179-233 (238)
72 3vk6_A E3 ubiquitin-protein li 98.2 1.1E-06 3.6E-11 60.7 3.5 47 107-156 3-50 (101)
73 2ko5_A Ring finger protein Z; 97.6 0.00012 4E-09 49.7 5.5 62 103-170 26-88 (99)
74 2lri_C Autoimmune regulator; Z 95.7 0.013 4.4E-07 37.3 4.2 45 103-151 10-58 (66)
75 2jun_A Midline-1; B-BOX, TRIM, 95.7 0.0093 3.2E-07 40.7 3.6 35 104-139 2-36 (101)
76 1we9_A PHD finger family prote 94.3 0.016 5.4E-07 36.4 1.5 49 103-151 4-57 (64)
77 2l5u_A Chromodomain-helicase-D 93.1 0.088 3E-06 32.7 3.4 46 102-151 8-57 (61)
78 1wil_A KIAA1045 protein; ring 92.9 0.21 7.2E-06 33.1 5.1 34 104-139 14-47 (89)
79 3lqh_A Histone-lysine N-methyl 92.8 0.053 1.8E-06 41.4 2.5 48 105-152 2-63 (183)
80 1mm2_A MI2-beta; PHD, zinc fin 92.6 0.043 1.5E-06 34.2 1.4 48 102-153 6-57 (61)
81 3o36_A Transcription intermedi 91.7 0.16 5.5E-06 38.4 4.0 46 104-153 3-52 (184)
82 2vpb_A Hpygo1, pygopus homolog 91.2 0.2 6.9E-06 31.5 3.4 35 102-136 5-40 (65)
83 3u5n_A E3 ubiquitin-protein li 90.9 0.069 2.4E-06 41.4 1.1 48 102-153 4-55 (207)
84 2yql_A PHD finger protein 21A; 90.4 0.056 1.9E-06 33.0 0.2 46 102-151 6-55 (56)
85 2k16_A Transcription initiatio 90.1 0.092 3.1E-06 33.9 1.1 50 104-154 17-70 (75)
86 2puy_A PHD finger protein 21A; 89.7 0.043 1.5E-06 34.0 -0.8 49 103-155 3-55 (60)
87 1wep_A PHF8; structural genomi 89.5 0.82 2.8E-05 29.6 5.4 49 104-153 11-64 (79)
88 2kgg_A Histone demethylase jar 89.1 0.51 1.7E-05 28.1 3.8 44 107-150 4-52 (52)
89 1xwh_A Autoimmune regulator; P 88.7 0.16 5.3E-06 32.0 1.3 45 103-151 6-54 (66)
90 1fp0_A KAP-1 corepressor; PHD 88.1 0.47 1.6E-05 31.8 3.4 47 102-152 22-72 (88)
91 3ql9_A Transcriptional regulat 87.3 0.69 2.3E-05 33.2 4.1 48 100-151 52-110 (129)
92 2yt5_A Metal-response element- 86.8 0.53 1.8E-05 29.3 3.0 51 103-153 4-62 (66)
93 3v43_A Histone acetyltransfera 86.6 0.23 7.9E-06 34.6 1.3 46 106-151 62-111 (112)
94 2ku3_A Bromodomain-containing 86.4 1.1 3.8E-05 28.5 4.4 50 102-151 13-65 (71)
95 1wev_A Riken cDNA 1110020M19; 85.7 0.24 8.3E-06 33.0 1.0 50 104-153 15-73 (88)
96 2ysm_A Myeloid/lymphoid or mix 85.0 0.36 1.2E-05 33.4 1.6 38 103-141 5-42 (111)
97 3v43_A Histone acetyltransfera 84.9 1.8 6.3E-05 29.9 5.3 34 104-137 4-42 (112)
98 2lbm_A Transcriptional regulat 84.7 1.7 6E-05 31.6 5.3 47 101-151 59-116 (142)
99 1f62_A Transcription factor WS 84.6 0.55 1.9E-05 27.7 2.1 44 107-151 2-49 (51)
100 2xb1_A Pygopus homolog 2, B-ce 82.6 0.99 3.4E-05 31.0 3.1 48 105-152 3-61 (105)
101 2l43_A N-teminal domain from h 82.5 1.7 5.7E-05 28.9 4.1 51 103-153 23-76 (88)
102 2ri7_A Nucleosome-remodeling f 82.0 0.27 9.4E-06 36.7 -0.0 48 104-152 7-59 (174)
103 3asl_A E3 ubiquitin-protein li 81.4 0.48 1.6E-05 30.2 1.0 44 107-151 20-68 (70)
104 2ro1_A Transcription intermedi 81.3 1.2 4.1E-05 33.9 3.4 44 105-152 2-49 (189)
105 2knc_A Integrin alpha-IIB; tra 79.5 5.4 0.00018 24.0 5.2 25 35-59 12-36 (54)
106 4gne_A Histone-lysine N-methyl 79.4 2.3 7.8E-05 29.4 4.0 49 102-156 12-66 (107)
107 1wee_A PHD finger family prote 79.2 0.32 1.1E-05 31.1 -0.4 47 104-151 15-65 (72)
108 2l8s_A Integrin alpha-1; trans 78.8 6.2 0.00021 23.7 5.3 25 35-59 9-33 (54)
109 2kwj_A Zinc finger protein DPF 78.0 2.3 7.7E-05 29.5 3.7 34 106-139 2-41 (114)
110 1wem_A Death associated transc 77.6 1.4 4.8E-05 28.2 2.4 46 105-152 16-70 (76)
111 1vfy_A Phosphatidylinositol-3- 76.7 2.2 7.4E-05 27.1 3.1 34 105-138 11-44 (73)
112 2jp3_A FXYD domain-containing 76.5 6.4 0.00022 24.7 5.0 31 28-58 8-38 (67)
113 1z60_A TFIIH basal transcripti 76.2 1.3 4.4E-05 27.3 1.8 43 106-149 16-58 (59)
114 1weo_A Cellulose synthase, cat 76.2 14 0.00049 24.5 7.5 52 104-155 15-70 (93)
115 2cs3_A Protein C14ORF4, MY039 75.8 5.2 0.00018 26.2 4.6 38 104-142 14-52 (93)
116 1z2q_A LM5-1; membrane protein 75.7 2.5 8.7E-05 27.6 3.3 36 104-139 20-55 (84)
117 3ask_A E3 ubiquitin-protein li 75.1 1.1 3.8E-05 35.2 1.6 44 107-151 176-224 (226)
118 3m62_A Ubiquitin conjugation f 74.9 1.7 5.7E-05 41.1 2.9 49 104-156 890-939 (968)
119 1wfk_A Zinc finger, FYVE domai 74.5 3.4 0.00012 27.3 3.7 53 104-156 8-67 (88)
120 2yw8_A RUN and FYVE domain-con 74.4 2.6 8.8E-05 27.4 3.0 35 105-139 19-53 (82)
121 3t7l_A Zinc finger FYVE domain 74.1 2.4 8.1E-05 28.2 2.8 49 105-153 20-74 (90)
122 1wen_A Inhibitor of growth fam 73.4 4.6 0.00016 25.6 4.0 44 104-152 15-65 (71)
123 1x4u_A Zinc finger, FYVE domai 73.0 3.2 0.00011 27.1 3.3 35 104-138 13-47 (84)
124 1y02_A CARP2, FYVE-ring finger 72.9 0.63 2.2E-05 32.9 -0.3 48 105-152 19-66 (120)
125 3o70_A PHD finger protein 13; 72.8 1.3 4.3E-05 28.0 1.1 46 104-151 18-66 (68)
126 2e6s_A E3 ubiquitin-protein li 72.6 0.95 3.2E-05 29.4 0.5 45 106-151 27-76 (77)
127 1joc_A EEA1, early endosomal a 72.5 2.6 8.7E-05 29.8 2.8 34 105-138 69-102 (125)
128 1zbd_B Rabphilin-3A; G protein 72.4 2.6 8.7E-05 30.3 2.8 35 103-137 53-88 (134)
129 2jo1_A Phospholemman; FXYD1, N 71.3 10 0.00036 23.9 5.1 34 30-63 9-42 (72)
130 2l2t_A Receptor tyrosine-prote 70.7 12 0.00041 21.5 4.9 27 35-61 12-38 (44)
131 1wyh_A SLIM 2, skeletal muscle 70.4 4.8 0.00016 24.7 3.6 41 105-155 5-45 (72)
132 1dvp_A HRS, hepatocyte growth 70.0 2.6 8.9E-05 32.6 2.6 35 104-138 160-194 (220)
133 1x4k_A Skeletal muscle LIM-pro 69.5 5 0.00017 24.7 3.5 42 105-156 5-46 (72)
134 2e6r_A Jumonji/ARID domain-con 69.3 0.85 2.9E-05 30.6 -0.3 48 104-152 15-66 (92)
135 2lv9_A Histone-lysine N-methyl 69.1 2.2 7.4E-05 28.8 1.8 44 106-151 29-75 (98)
136 1x61_A Thyroid receptor intera 68.8 7.9 0.00027 23.7 4.3 40 105-154 5-44 (72)
137 3zyq_A Hepatocyte growth facto 68.8 2.9 9.9E-05 32.6 2.7 36 104-139 163-198 (226)
138 2k1a_A Integrin alpha-IIB; sin 68.5 8.1 0.00028 21.9 3.8 25 35-59 10-34 (42)
139 1x63_A Skeletal muscle LIM-pro 68.2 7 0.00024 24.7 4.1 42 105-156 15-56 (82)
140 1g47_A Pinch protein; LIM doma 66.9 6.7 0.00023 24.4 3.7 43 104-156 10-52 (77)
141 2cu8_A Cysteine-rich protein 2 66.4 5.4 0.00018 24.9 3.2 40 105-155 9-48 (76)
142 1x4l_A Skeletal muscle LIM-pro 65.3 8.6 0.00029 23.6 4.0 40 105-154 5-46 (72)
143 1zfo_A LAsp-1; LIM domain, zin 64.2 2.3 8E-05 22.3 0.9 28 106-136 4-31 (31)
144 3f6q_B LIM and senescent cell 63.6 4.1 0.00014 24.9 2.2 42 105-156 11-52 (72)
145 1weu_A Inhibitor of growth fam 62.4 5.9 0.0002 26.4 2.8 43 105-152 36-85 (91)
146 2d8v_A Zinc finger FYVE domain 62.2 8.1 0.00028 24.2 3.2 32 102-138 5-37 (67)
147 1wew_A DNA-binding family prot 61.7 5 0.00017 25.7 2.4 47 104-152 15-72 (78)
148 3mpx_A FYVE, rhogef and PH dom 61.2 1.7 5.9E-05 36.7 0.0 49 105-153 375-430 (434)
149 1x68_A FHL5 protein; four-and- 61.1 10 0.00035 23.6 3.8 40 105-154 5-46 (76)
150 1afo_A Glycophorin A; integral 60.9 19 0.00066 20.0 4.5 25 34-58 11-35 (40)
151 3i2d_A E3 SUMO-protein ligase 60.7 7.8 0.00027 32.6 3.9 45 106-153 250-298 (371)
152 3a1b_A DNA (cytosine-5)-methyl 60.6 8.9 0.00031 28.3 3.8 38 100-141 74-113 (159)
153 2co8_A NEDD9 interacting prote 60.3 7.6 0.00026 24.8 3.1 43 104-157 14-56 (82)
154 2gmg_A Hypothetical protein PF 59.4 2 6.8E-05 29.6 0.1 26 126-156 72-97 (105)
155 3shb_A E3 ubiquitin-protein li 59.1 1.6 5.4E-05 28.3 -0.5 44 107-151 28-76 (77)
156 2jne_A Hypothetical protein YF 58.9 2.8 9.7E-05 28.4 0.8 40 106-154 33-72 (101)
157 2zet_C Melanophilin; complex, 58.7 6.2 0.00021 28.9 2.7 47 104-151 67-116 (153)
158 1iml_A CRIP, cysteine rich int 58.6 6.4 0.00022 24.5 2.4 42 104-150 26-68 (76)
159 2dj7_A Actin-binding LIM prote 58.3 8.8 0.0003 24.4 3.1 40 104-154 14-53 (80)
160 4fo9_A E3 SUMO-protein ligase 57.5 9.4 0.00032 32.0 3.9 46 106-154 216-265 (360)
161 2klu_A T-cell surface glycopro 57.1 18 0.00061 22.7 4.1 6 127-132 59-64 (70)
162 3c6w_A P28ING5, inhibitor of g 56.9 2.7 9.2E-05 25.6 0.4 42 105-151 9-57 (59)
163 2zxe_G FXYD10, phospholemman-l 56.2 9.6 0.00033 24.3 2.8 32 27-58 9-40 (74)
164 2l3k_A Rhombotin-2, linker, LI 55.8 9.1 0.00031 26.4 3.1 36 104-141 35-70 (123)
165 2kwj_A Zinc finger protein DPF 55.5 0.99 3.4E-05 31.4 -2.1 46 107-153 60-109 (114)
166 2jwa_A Receptor tyrosine-prote 55.5 25 0.00087 20.1 4.3 24 35-59 14-37 (44)
167 3kqi_A GRC5, PHD finger protei 55.2 2.8 9.7E-05 26.7 0.3 45 108-152 12-61 (75)
168 3o7a_A PHD finger protein 13 v 54.7 3.2 0.00011 24.4 0.4 41 110-151 8-51 (52)
169 2vnf_A ING 4, P29ING4, inhibit 54.5 2.9 9.9E-05 25.5 0.2 42 105-151 10-58 (60)
170 2klu_A T-cell surface glycopro 54.3 35 0.0012 21.3 5.1 9 38-46 12-20 (70)
171 1wd2_A Ariadne-1 protein homol 54.0 2.2 7.4E-05 26.2 -0.4 36 105-140 6-45 (60)
172 3mjh_B Early endosome antigen 53.6 0.95 3.3E-05 24.7 -1.9 15 105-119 5-19 (34)
173 1a7i_A QCRP2 (LIM1); LIM domai 53.2 5.9 0.0002 25.1 1.6 40 105-155 7-46 (81)
174 2d8y_A Eplin protein; LIM doma 53.0 13 0.00043 24.1 3.3 41 105-156 15-55 (91)
175 2jrp_A Putative cytoplasmic pr 52.9 7.1 0.00024 25.5 1.9 17 106-122 3-19 (81)
176 2pv0_B DNA (cytosine-5)-methyl 51.5 13 0.00044 31.4 3.8 47 101-151 89-147 (386)
177 2ysm_A Myeloid/lymphoid or mix 50.8 2.7 9.2E-05 28.8 -0.4 44 107-151 56-103 (111)
178 2o35_A Hypothetical protein DU 50.3 6.5 0.00022 26.7 1.4 12 130-141 42-53 (105)
179 1x64_A Alpha-actinin-2 associa 50.3 28 0.00096 22.2 4.7 41 104-156 24-64 (89)
180 3fyb_A Protein of unknown func 49.6 6.7 0.00023 26.6 1.4 12 130-141 41-52 (104)
181 2ct7_A Ring finger protein 31; 49.4 2.9 9.9E-05 27.4 -0.4 32 108-139 28-61 (86)
182 2rgt_A Fusion of LIM/homeobox 49.0 11 0.00038 27.5 2.7 38 107-154 67-104 (169)
183 2jvx_A NF-kappa-B essential mo 47.6 3.7 0.00013 21.3 -0.1 12 144-155 4-15 (28)
184 1v6g_A Actin binding LIM prote 47.2 20 0.00068 22.4 3.5 40 105-156 15-54 (81)
185 2egq_A FHL1 protein; LIM domai 47.1 19 0.00063 22.2 3.3 41 105-155 15-58 (77)
186 2cup_A Skeletal muscle LIM-pro 45.8 26 0.00089 22.8 4.0 47 104-155 32-78 (101)
187 3kv5_D JMJC domain-containing 45.6 4.2 0.00014 35.5 -0.1 47 105-152 37-88 (488)
188 2ehe_A Four and A half LIM dom 45.5 19 0.00064 22.6 3.1 40 105-154 15-54 (82)
189 2d8x_A Protein pinch; LIM doma 45.0 24 0.00081 21.3 3.5 40 105-156 5-44 (70)
190 2k1k_A Ephrin type-A receptor 44.5 37 0.0013 18.6 3.8 9 38-46 16-24 (38)
191 2cor_A Pinch protein; LIM doma 43.4 26 0.00088 21.9 3.5 41 104-156 14-54 (79)
192 2g6q_A Inhibitor of growth pro 42.6 6.1 0.00021 24.2 0.3 44 105-151 11-59 (62)
193 2l4z_A DNA endonuclease RBBP8, 42.1 15 0.00053 25.4 2.4 39 105-154 61-99 (123)
194 2d8z_A Four and A half LIM dom 41.8 34 0.0012 20.5 3.8 38 105-154 5-42 (70)
195 2knc_B Integrin beta-3; transm 41.2 33 0.0011 22.1 3.7 32 32-63 10-41 (79)
196 2rsd_A E3 SUMO-protein ligase 40.7 2.9 9.9E-05 26.1 -1.4 44 106-151 11-64 (68)
197 2jmo_A Parkin; IBR, E3 ligase, 40.7 2.2 7.6E-05 27.6 -2.1 14 126-139 55-68 (80)
198 2cur_A Skeletal muscle LIM-pro 40.5 36 0.0012 20.3 3.8 38 105-154 5-42 (69)
199 1x62_A C-terminal LIM domain p 40.4 20 0.00068 22.4 2.6 39 104-154 14-52 (79)
200 2dar_A PDZ and LIM domain prot 39.9 27 0.00092 22.3 3.3 40 104-155 24-63 (90)
201 2jtn_A LIM domain-binding prot 39.5 16 0.00054 26.9 2.3 47 104-156 86-132 (182)
202 1nyp_A Pinch protein; LIM doma 39.3 17 0.00059 21.7 2.1 39 105-155 5-43 (66)
203 1wig_A KIAA1808 protein; LIM d 38.2 41 0.0014 20.6 3.8 37 106-154 6-42 (73)
204 1rut_X Flinc4, fusion protein 37.3 22 0.00075 26.3 2.8 27 107-135 71-97 (188)
205 1pi7_A VPU protein, U ORF prot 37.1 52 0.0018 17.9 4.2 19 39-57 7-25 (36)
206 1m3v_A FLIN4, fusion of the LI 35.5 34 0.0011 23.3 3.4 50 105-156 32-82 (122)
207 2iyb_E Testin, TESS, TES; LIM 35.0 25 0.00087 20.9 2.4 38 107-154 4-43 (65)
208 2ku7_A MLL1 PHD3-CYP33 RRM chi 33.5 78 0.0027 21.3 5.1 28 126-153 7-45 (140)
209 2xjy_A Rhombotin-2; oncoprotei 33.1 31 0.0011 23.6 2.9 50 104-155 28-78 (131)
210 1x3h_A Leupaxin; paxillin fami 32.3 44 0.0015 20.6 3.3 40 105-156 15-54 (80)
211 2csz_A Synaptotagmin-like prot 32.2 22 0.00076 22.8 1.8 34 102-135 22-56 (76)
212 2cuq_A Four and A half LIM dom 32.2 40 0.0014 20.8 3.1 38 105-154 15-52 (80)
213 1x4i_A Inhibitor of growth pro 31.3 18 0.0006 22.7 1.2 46 105-153 6-56 (70)
214 2dlo_A Thyroid receptor-intera 29.4 52 0.0018 20.3 3.3 39 105-155 15-53 (81)
215 2k9y_A Ephrin type-A receptor 27.6 40 0.0014 18.4 2.2 10 38-47 15-24 (41)
216 1j2o_A FLIN2, fusion of rhombo 27.2 46 0.0016 22.3 2.9 37 104-142 29-66 (114)
217 2l9u_A Receptor tyrosine-prote 27.2 80 0.0027 17.0 4.4 15 40-54 10-24 (40)
218 2kpi_A Uncharacterized protein 27.0 24 0.0008 21.1 1.1 14 105-118 10-23 (56)
219 2xqn_T Testin, TESS; metal-bin 25.9 53 0.0018 22.2 3.1 46 105-155 30-75 (126)
220 2pk7_A Uncharacterized protein 25.0 16 0.00055 22.9 0.1 18 138-155 3-20 (69)
221 2kig_A Inositol polyphosphate 24.8 26 0.00088 25.3 1.1 12 2-13 62-73 (161)
222 3kv4_A PHD finger protein 8; e 24.8 15 0.00052 31.6 -0.1 47 107-153 6-57 (447)
223 1b8t_A Protein (CRP1); LIM dom 23.9 47 0.0016 24.5 2.6 38 106-154 116-153 (192)
224 3pwf_A Rubrerythrin; non heme 21.9 48 0.0017 24.4 2.3 23 122-151 139-161 (170)
225 2jny_A Uncharacterized BCR; st 20.6 16 0.00055 22.8 -0.5 18 138-155 5-22 (67)
226 2jmi_A Protein YNG1, ING1 homo 20.6 55 0.0019 21.5 2.1 45 104-151 25-75 (90)
227 2akl_A PHNA-like protein PA012 20.1 41 0.0014 24.0 1.4 13 106-118 28-40 (138)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.72 E-value=6e-18 Score=117.16 Aligned_cols=76 Identities=32% Similarity=0.674 Sum_probs=66.1
Q ss_pred HhhcCCCHHHHhcCCceeecCCC--CCCCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcC
Q 043554 79 LAVTGLKKRDLRRIPVAVYGEGV--DIPATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLN 155 (192)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 155 (192)
....+++++.++.++...+..+. ...+..|+||+++|..++.++.++ |+|.||..||..|++.+.+||+||..+..
T Consensus 12 ~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 12 VANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred cCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 44567899999999998887653 335678999999999999999999 99999999999999999999999998854
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.1e-17 Score=111.58 Aligned_cols=68 Identities=32% Similarity=0.785 Sum_probs=56.9
Q ss_pred HHhcCCceeecCC-CCCCCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcCC
Q 043554 88 DLRRIPVAVYGEG-VDIPATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLNN 156 (192)
Q Consensus 88 ~~~~~~~~~~~~~-~~~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 156 (192)
.++.++...+... ...++.+|+||+++|..++.++.++ |+|.||..||..|++.+.+||+||+.+...
T Consensus 5 ~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 5 SSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred hHhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 3456777766654 3345678999999999999999999 999999999999999889999999988653
No 3
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.66 E-value=1.4e-16 Score=106.76 Aligned_cols=59 Identities=47% Similarity=0.946 Sum_probs=51.6
Q ss_pred CCCCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcCCCCCCC
Q 043554 102 DIPATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLNNNERST 161 (192)
Q Consensus 102 ~~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~~~ 161 (192)
...+.+|+||++.|..++.++.++ |+|.||..||..|++.+.+||+||+.+...+....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCC
Confidence 335678999999999998889998 99999999999999988999999999977655544
No 4
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.65 E-value=8.8e-17 Score=100.62 Aligned_cols=51 Identities=53% Similarity=1.248 Sum_probs=46.3
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCc
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLL 154 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 154 (192)
++.+|+||+++|.+++.+..++.|+|.||..||..|++++.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 457899999999998888888679999999999999999999999999874
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.65 E-value=2.1e-16 Score=103.43 Aligned_cols=55 Identities=40% Similarity=0.921 Sum_probs=48.8
Q ss_pred CCCCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcCCC
Q 043554 102 DIPATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLNNN 157 (192)
Q Consensus 102 ~~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 157 (192)
...+..|+||++.|..++.++.++ |+|.||..||..|++.+.+||+||..+....
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 345678999999999888899998 9999999999999998889999999886543
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.7e-16 Score=105.29 Aligned_cols=56 Identities=30% Similarity=0.791 Sum_probs=49.6
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcCCCCCC
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLNNNERS 160 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~~ 160 (192)
.+..|+||++.|..++.+..++ |+|.||..||..|++.+.+||+||..+.......
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQLS 69 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCSCC
T ss_pred CCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccccccccC
Confidence 4678999999999999999998 9999999999999998889999999986654433
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=6.4e-16 Score=104.68 Aligned_cols=54 Identities=30% Similarity=0.775 Sum_probs=43.7
Q ss_pred CCCCCCCcccCCcCC-----------CCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcCC
Q 043554 103 IPATECPICLGEFVD-----------GEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLNN 156 (192)
Q Consensus 103 ~~~~~C~ICl~~~~~-----------~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 156 (192)
.++.+|+||+++|.+ ++.++.++.|+|.||.+||.+|++++.+||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 356789999998864 344555555999999999999999999999999987543
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.56 E-value=3.3e-15 Score=93.29 Aligned_cols=50 Identities=32% Similarity=0.713 Sum_probs=43.4
Q ss_pred CCCCCCcccCCcCCCC-ceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCc
Q 043554 104 PATECPICLGEFVDGE-KVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLL 154 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~-~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 154 (192)
.+.+|+||++.|.+++ .++.++ |+|.||..||..|++.+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4678999999997644 567787 9999999999999998899999998874
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.56 E-value=3.4e-15 Score=106.97 Aligned_cols=56 Identities=23% Similarity=0.608 Sum_probs=44.6
Q ss_pred CCCCCCcccCCcCCCC---------------ceEEcCCCCCcccHhhHHHHH-----hCCCCCcccCccCcCCCCCC
Q 043554 104 PATECPICLGEFVDGE---------------KVRVLPKCNHGFHVRCIDTWL-----LSHSSCPNCRHSLLNNNERS 160 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~---------------~v~~l~~C~H~FH~~Ci~~Wl-----~~~~~CP~CR~~l~~~~~~~ 160 (192)
.+.+|+||+++|..+. .++.++ |+|.||..||..|+ +.+.+||+||+.+.......
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~q 99 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQ 99 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCC
Confidence 3568999999997653 345777 99999999999999 44668999999987664433
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.53 E-value=3.6e-15 Score=97.83 Aligned_cols=54 Identities=24% Similarity=0.658 Sum_probs=46.2
Q ss_pred CCCCCCcccCCcCCC----CceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcCCCC
Q 043554 104 PATECPICLGEFVDG----EKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLNNNE 158 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~----~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~ 158 (192)
++.+|+||++.|.+. +.+..++ |||.||..||..|++++.+||+||..+...+-
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred CCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence 567899999999764 4557787 99999999999999988999999999876543
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=6.4e-15 Score=95.98 Aligned_cols=52 Identities=25% Similarity=0.682 Sum_probs=44.4
Q ss_pred CCCCCCCcccCCcCCC----CceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcC
Q 043554 103 IPATECPICLGEFVDG----EKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLN 155 (192)
Q Consensus 103 ~~~~~C~ICl~~~~~~----~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 155 (192)
.++..|+||++.|.+. ..+..++ |||.||..||..|++.+.+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 3567899999999864 3457787 99999999999999988999999998754
No 12
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.51 E-value=1.3e-14 Score=103.06 Aligned_cols=51 Identities=33% Similarity=0.669 Sum_probs=43.6
Q ss_pred CCCCCCCcccCCcCCCC---------------ceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCc
Q 043554 103 IPATECPICLGEFVDGE---------------KVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLL 154 (192)
Q Consensus 103 ~~~~~C~ICl~~~~~~~---------------~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 154 (192)
.++..|+||++.|.+.- .++.++ |+|.||..||..||+.+.+||+||+.+.
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 35778999999998651 356677 9999999999999999999999999863
No 13
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=2.6e-14 Score=96.51 Aligned_cols=56 Identities=25% Similarity=0.596 Sum_probs=45.7
Q ss_pred CCCCCCCCcccCCcCCCCceEEcCCCC-----CcccHhhHHHHHhCC--CCCcccCccCcCCCCC
Q 043554 102 DIPATECPICLGEFVDGEKVRVLPKCN-----HGFHVRCIDTWLLSH--SSCPNCRHSLLNNNER 159 (192)
Q Consensus 102 ~~~~~~C~ICl~~~~~~~~v~~l~~C~-----H~FH~~Ci~~Wl~~~--~~CP~CR~~l~~~~~~ 159 (192)
..++..|.||+++|.+++.+ ++| |+ |.||.+||++|+..+ .+||+||..+......
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~ 74 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKL 74 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCS
T ss_pred CCCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCccc
Confidence 34567899999999877766 588 86 999999999999754 5899999998655443
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.50 E-value=7.3e-15 Score=94.31 Aligned_cols=53 Identities=25% Similarity=0.691 Sum_probs=45.1
Q ss_pred CCCCCCcccCCcCCC----CceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcCCC
Q 043554 104 PATECPICLGEFVDG----EKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLNNN 157 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~----~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 157 (192)
++.+|+||++.+.++ +.+..++ |||.||..|+..|++++.+||+||..+...+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 356899999999764 4556777 9999999999999998889999999986654
No 15
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=4.6e-14 Score=93.12 Aligned_cols=56 Identities=27% Similarity=0.602 Sum_probs=46.0
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcCCCCCCCC
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLNNNERSTA 162 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~~~~ 162 (192)
++..|+||++.|.++ +..++ |||.||..||..|++.+..||+||..+...+.....
T Consensus 14 ~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 14 PYILCSICKGYLIDA--TTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSGP 69 (72)
T ss_dssp GGGSCTTTSSCCSSC--EECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCCC
T ss_pred CCCCCCCCChHHHCc--CEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCcccccccC
Confidence 456899999999874 33347 999999999999999888999999999776555443
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.47 E-value=5.5e-14 Score=91.49 Aligned_cols=49 Identities=35% Similarity=0.839 Sum_probs=42.9
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcC
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLN 155 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 155 (192)
.+..|+||++.+.++ +..++ |||.||..|+..|++.+.+||+||..+..
T Consensus 4 ~~~~C~IC~~~~~~~--~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNY--SMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSC--EEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCC--cEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 467899999998753 57788 99999999999999988999999998854
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.6e-14 Score=95.08 Aligned_cols=52 Identities=29% Similarity=0.614 Sum_probs=44.3
Q ss_pred CCCCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcCCC
Q 043554 102 DIPATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLNNN 157 (192)
Q Consensus 102 ~~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 157 (192)
..++..|+||++.+.+. ..++ |+|.||..||..|++.+.+||+||..+....
T Consensus 12 ~~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHP---VSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPEDF 63 (71)
T ss_dssp SSSCCBCSSSSSBCSSE---EEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHHH
T ss_pred CCCCCCCccCCcccCCC---EEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHhh
Confidence 34567899999998764 5677 9999999999999998899999999986543
No 18
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2.8e-14 Score=93.47 Aligned_cols=50 Identities=42% Similarity=0.947 Sum_probs=43.8
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcCCCC
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLNNNE 158 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~ 158 (192)
++..|+||++.+.+ ..++ |+|.||..||..|+..+.+||+||..+...+.
T Consensus 14 ~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 14 DEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred CCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence 46789999999877 5677 99999999999999988999999999875543
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=2.3e-13 Score=92.73 Aligned_cols=53 Identities=28% Similarity=0.671 Sum_probs=45.2
Q ss_pred CCCCCCCcccCCcCCCCc-eEEcCCCCCcccHhhHHHHHhCC---CCCcccCccCcCC
Q 043554 103 IPATECPICLGEFVDGEK-VRVLPKCNHGFHVRCIDTWLLSH---SSCPNCRHSLLNN 156 (192)
Q Consensus 103 ~~~~~C~ICl~~~~~~~~-v~~l~~C~H~FH~~Ci~~Wl~~~---~~CP~CR~~l~~~ 156 (192)
.+..+|+||++.|.+.+. .+.++ |||.||..||..|++.+ ..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 356789999999998765 67787 99999999999999865 7899999987554
No 20
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.40 E-value=2.6e-14 Score=103.07 Aligned_cols=51 Identities=35% Similarity=0.712 Sum_probs=1.6
Q ss_pred CCCCCCCcccCCcCCC-------------C--ceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCc
Q 043554 103 IPATECPICLGEFVDG-------------E--KVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLL 154 (192)
Q Consensus 103 ~~~~~C~ICl~~~~~~-------------~--~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 154 (192)
.+++.|+||+++|.+. + .+..++ |+|.||..||..||+.+.+||+||+.+.
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CCC----------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 3567999999999753 2 233346 9999999999999999999999999864
No 21
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=4e-13 Score=89.15 Aligned_cols=54 Identities=22% Similarity=0.652 Sum_probs=43.9
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCC--CCCcccCccCcCCCCCC
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSH--SSCPNCRHSLLNNNERS 160 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~l~~~~~~~ 160 (192)
...+|+||.+.+..++... .|+|.||..||..||+.+ .+||+||+.+..+.+..
T Consensus 14 ~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~~~ 69 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPKS 69 (74)
T ss_dssp SSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCCCC
T ss_pred CCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCCCC
Confidence 4568999999998765433 599999999999999876 78999999986554443
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=3.1e-13 Score=91.01 Aligned_cols=48 Identities=23% Similarity=0.387 Sum_probs=42.0
Q ss_pred CCCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCc
Q 043554 103 IPATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLL 154 (192)
Q Consensus 103 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 154 (192)
.....|+||++.|.++ .+++ |||.||..||..|++....||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP---VVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSE---EECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCe---eEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 3467899999999764 4677 9999999999999998889999999885
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=5.4e-13 Score=87.84 Aligned_cols=50 Identities=30% Similarity=0.674 Sum_probs=41.7
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHh---CCCCCcccCccCcCCC
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLL---SHSSCPNCRHSLLNNN 157 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~---~~~~CP~CR~~l~~~~ 157 (192)
++..|+||++.|.+. ..++ |||.||..||..|++ .+..||+||..+..++
T Consensus 19 ~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 19 EEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCBCTTTCSBCSSE---EECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred cCCEeccCCcccCCe---EEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 567899999998863 5667 999999999999996 4558999999886543
No 24
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.37 E-value=5.2e-13 Score=88.54 Aligned_cols=51 Identities=29% Similarity=0.673 Sum_probs=41.6
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCC--CCCcccCccCcCCC
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSH--SSCPNCRHSLLNNN 157 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~l~~~~ 157 (192)
++..|+||++.|.++ ..++.|||.||..||..|++.+ ..||+||+.+...+
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 14 DELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp GGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 456899999999875 4465599999999999999754 68999999765443
No 25
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=3.9e-13 Score=87.02 Aligned_cols=49 Identities=22% Similarity=0.560 Sum_probs=41.2
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHh-CCCCCcccCccCcCC
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLL-SHSSCPNCRHSLLNN 156 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~~~ 156 (192)
++..|+||++.+.++. .++ |||.||..||..|++ .+..||+||+.+..+
T Consensus 14 ~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPK---QTE-CGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCEECTTTCCEESSCC---CCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred cCCCCCCCChHhcCee---ECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 4678999999998763 366 999999999999994 567899999988654
No 26
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.34 E-value=3.3e-13 Score=100.01 Aligned_cols=47 Identities=32% Similarity=0.855 Sum_probs=41.4
Q ss_pred CCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcC
Q 043554 105 ATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLN 155 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 155 (192)
+..|+||++.|.++ ..++ |||.||..||..|+..+.+||+||.++..
T Consensus 53 ~~~C~iC~~~~~~~---~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---VTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSSE---EEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cCCCcccCcccCCc---eECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 45799999999764 5678 99999999999999999999999998843
No 27
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.33 E-value=5.1e-13 Score=97.37 Aligned_cols=55 Identities=24% Similarity=0.650 Sum_probs=46.7
Q ss_pred CCCCCCcccCCcCCC----CceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcCCCCC
Q 043554 104 PATECPICLGEFVDG----EKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLNNNER 159 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~----~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~ 159 (192)
++.+|+||++.|.++ +.+..++ |||.||..||..|++.+.+||+||+.+......
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~ 64 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 64 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEE
T ss_pred CCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCcccccc
Confidence 467899999999764 4557787 999999999999999999999999998665543
No 28
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.32 E-value=1.3e-12 Score=87.23 Aligned_cols=49 Identities=27% Similarity=0.606 Sum_probs=42.2
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhC-CCCCcccCccCcCC
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLS-HSSCPNCRHSLLNN 156 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~~ 156 (192)
++..|+||++.|.++ ..++ |||.||..||..|+.. +.+||+||..+...
T Consensus 7 ~~~~C~IC~~~~~~P---v~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 7 EYFRCPISLELMKDP---VIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSCTTTSCCCSSE---EEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred ccCCCCCccccccCC---EEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 467899999999875 4567 9999999999999986 77899999988654
No 29
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.32 E-value=2.9e-12 Score=86.34 Aligned_cols=49 Identities=33% Similarity=0.640 Sum_probs=42.3
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhC------CCCCcccCccCcCC
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLS------HSSCPNCRHSLLNN 156 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~l~~~ 156 (192)
++..|+||++.|.++ ..++ |+|.||..||..|+.. ...||+||..+..+
T Consensus 18 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 18 EEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred cCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 467899999999876 4677 9999999999999986 66899999988654
No 30
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=3.7e-12 Score=85.88 Aligned_cols=50 Identities=36% Similarity=0.701 Sum_probs=42.5
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhC------CCCCcccCccCcCCC
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLS------HSSCPNCRHSLLNNN 157 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~l~~~~ 157 (192)
++..|+||++.|.+. ..++ |||.||..|+..|+.. ...||+||..+...+
T Consensus 18 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 18 EEVTCPICLELLTQP---LSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCTTTCSCCSSC---BCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred CCCCCCCCCcccCCc---eeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 467899999999875 4567 9999999999999976 678999999987543
No 31
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.30 E-value=1.8e-12 Score=83.66 Aligned_cols=54 Identities=24% Similarity=0.570 Sum_probs=42.7
Q ss_pred CCCCCCcccC-CcCCCCce-EEcCCCCCcccHhhHHHHHhC-CCCCcccCccCcCCCC
Q 043554 104 PATECPICLG-EFVDGEKV-RVLPKCNHGFHVRCIDTWLLS-HSSCPNCRHSLLNNNE 158 (192)
Q Consensus 104 ~~~~C~ICl~-~~~~~~~v-~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~~~~ 158 (192)
++..|+||++ .|.++... ..++ |||.||..||..|+.+ +..||+||..+..++-
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred CCCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence 3568999999 77776543 4566 9999999999999764 4679999999865543
No 32
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=3.9e-12 Score=81.47 Aligned_cols=42 Identities=31% Similarity=0.734 Sum_probs=36.3
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHh---CCCCCccc
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLL---SHSSCPNC 149 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~---~~~~CP~C 149 (192)
++..|+||++.|.++ ..++ |||.||..||..|++ .+..||+|
T Consensus 19 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSSC---EECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhCCe---EEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 567899999999875 5667 999999999999997 45689998
No 33
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.29 E-value=1.2e-12 Score=91.71 Aligned_cols=48 Identities=31% Similarity=0.762 Sum_probs=41.1
Q ss_pred CCCCCcccCCcCCCCceEE-cCCCCCcccHhhHHHHHhCC-CCCcccCccCcCC
Q 043554 105 ATECPICLGEFVDGEKVRV-LPKCNHGFHVRCIDTWLLSH-SSCPNCRHSLLNN 156 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~-l~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~l~~~ 156 (192)
+..|+||++.|.++ +. ++ |||.||..||..|++.+ ..||+||..+...
T Consensus 22 ~~~C~IC~~~~~~p---~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 22 VFRCFICMEKLRDA---RLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp HTBCTTTCSBCSSE---EECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCccCCccccCc---cccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 56899999999763 45 77 99999999999999876 6899999998543
No 34
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.28 E-value=9.8e-13 Score=87.83 Aligned_cols=49 Identities=33% Similarity=0.609 Sum_probs=41.7
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhC-------CCCCcccCccCcCC
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLS-------HSSCPNCRHSLLNN 156 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~-------~~~CP~CR~~l~~~ 156 (192)
++..|+||++.|.++ ..++ |||.||..||..|++. ...||+||..+...
T Consensus 11 ~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 11 EEVTCPICLELLTEP---LSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCEETTTTEECSSC---CCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred cCCCCcCCCcccCCe---eECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 467899999999875 4467 9999999999999976 56799999988654
No 35
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.26 E-value=2.6e-12 Score=89.67 Aligned_cols=48 Identities=25% Similarity=0.650 Sum_probs=41.1
Q ss_pred CCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcC
Q 043554 105 ATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLN 155 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 155 (192)
+..|+||++.|.++ +..++ |||.||..||..|+..+.+||+||..+..
T Consensus 22 ~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNIA--MIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChhhCCc--CEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 46899999999874 33346 99999999999999988899999998865
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.26 E-value=3.2e-12 Score=90.61 Aligned_cols=50 Identities=30% Similarity=0.735 Sum_probs=42.5
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcCC
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLNN 156 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 156 (192)
++..|+||++.|.++ +..++ |||.||..||..|+..+..||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDA--TTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhCc--CEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 356899999999764 44447 999999999999999889999999988654
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.24 E-value=2.6e-12 Score=93.54 Aligned_cols=54 Identities=24% Similarity=0.664 Sum_probs=45.4
Q ss_pred CCCCCCCcccCCcCCC----CceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcCCC
Q 043554 103 IPATECPICLGEFVDG----EKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLNNN 157 (192)
Q Consensus 103 ~~~~~C~ICl~~~~~~----~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 157 (192)
.+...|+||++.|.+. .....++ |||.||..||..|++.+.+||+||..+..++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 3567899999999763 3446677 9999999999999999999999999987654
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=5.7e-12 Score=79.09 Aligned_cols=42 Identities=29% Similarity=0.831 Sum_probs=35.6
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHh---CCCCCccc
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLL---SHSSCPNC 149 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~---~~~~CP~C 149 (192)
++..|+||++.+.++ ..++ |||.||..||..|++ .+..||+|
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 467899999999876 4577 999999999999964 46679998
No 39
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.22 E-value=9.8e-12 Score=85.45 Aligned_cols=48 Identities=31% Similarity=0.704 Sum_probs=40.1
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhC--CCCCcccCccCc
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLS--HSSCPNCRHSLL 154 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~l~ 154 (192)
++..|+||++.|.++ ..++.|||.||..||..|+.. +..||+||..+.
T Consensus 12 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 567899999999875 456559999999999999964 358999999873
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.21 E-value=1.1e-11 Score=89.96 Aligned_cols=47 Identities=26% Similarity=0.528 Sum_probs=40.4
Q ss_pred CCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCC-CCcccCccCcC
Q 043554 105 ATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHS-SCPNCRHSLLN 155 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~l~~ 155 (192)
+..|+||++.|.++ ..++ |||.||..||..|+..+. .||+||..+..
T Consensus 52 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRP---ITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCc---EEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 56899999999864 5677 999999999999998544 89999999865
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.20 E-value=1.7e-11 Score=87.01 Aligned_cols=49 Identities=29% Similarity=0.647 Sum_probs=40.9
Q ss_pred CCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCC---CCcccCccCcCCC
Q 043554 105 ATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHS---SCPNCRHSLLNNN 157 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~---~CP~CR~~l~~~~ 157 (192)
...|+||++.|.++ ..++ |||.||..||..|+..+. .||+||..+....
T Consensus 21 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 21 ILECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp HTSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCCCcccChhhcCe---EECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 45799999999775 3467 999999999999998653 8999999887654
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.18 E-value=1.2e-11 Score=94.08 Aligned_cols=48 Identities=38% Similarity=0.777 Sum_probs=40.8
Q ss_pred CCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhC-CCCCcccCccCcC
Q 043554 105 ATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLS-HSSCPNCRHSLLN 155 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~ 155 (192)
+..|+||++.|.++ +..++ |||.||..||..|+.. +..||+||..+..
T Consensus 54 ~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKNT--MTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhhCc--CEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 45899999999874 44457 9999999999999986 7789999998853
No 43
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.15 E-value=7.1e-11 Score=79.15 Aligned_cols=55 Identities=18% Similarity=0.408 Sum_probs=42.0
Q ss_pred CCCCCCCcccCCcCCCCce-EEcCCCCCcccHhhHHHHHh-CCCCCcccCccCcCCCC
Q 043554 103 IPATECPICLGEFVDGEKV-RVLPKCNHGFHVRCIDTWLL-SHSSCPNCRHSLLNNNE 158 (192)
Q Consensus 103 ~~~~~C~ICl~~~~~~~~v-~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~~~~~ 158 (192)
.++.+|+||++.+...+.. ..++ |||.||..|+..|+. ....||+||+.+.....
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 3567899999998654332 2345 999999999999875 35679999999876543
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.13 E-value=2.9e-11 Score=90.79 Aligned_cols=48 Identities=27% Similarity=0.546 Sum_probs=41.2
Q ss_pred CCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCC-CCcccCccCcCC
Q 043554 105 ATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHS-SCPNCRHSLLNN 156 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~l~~~ 156 (192)
...|+||++.|.++ ..++ |||.||..||..|+.... .||+||..+...
T Consensus 78 ~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQP---VTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCC---EEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 56899999999775 4577 999999999999998654 799999998665
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.11 E-value=1.7e-11 Score=88.25 Aligned_cols=49 Identities=35% Similarity=0.665 Sum_probs=41.6
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCC-CCcccCccCcCC
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHS-SCPNCRHSLLNN 156 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~l~~~ 156 (192)
++..|+||++.+.++ ..++ |||.||..||..|++.+. +||+||..+...
T Consensus 17 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 17 SKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp GGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 456899999999875 5577 999999999999998654 899999988654
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.11 E-value=4e-11 Score=85.92 Aligned_cols=49 Identities=31% Similarity=0.565 Sum_probs=41.7
Q ss_pred CCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhC-CCCCcccCccCcCCC
Q 043554 105 ATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLS-HSSCPNCRHSLLNNN 157 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~~~ 157 (192)
+..|+||++.+.++ ..++ |||.||..||..|+.. +.+||+||..+...+
T Consensus 23 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 23 SISCQICEHILADP---VETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCcHhcCc---EEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 56899999999764 4577 9999999999999986 678999999986543
No 47
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.10 E-value=1.6e-11 Score=87.87 Aligned_cols=48 Identities=29% Similarity=0.710 Sum_probs=40.8
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhC-CCCCcccCccCcC
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLS-HSSCPNCRHSLLN 155 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~ 155 (192)
++..|+||++.|.++ ..++ |||.||..||..|+.. +..||+||..+..
T Consensus 14 ~~~~C~iC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVEP---VTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSSC---EECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCce---eEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 356899999999875 5667 9999999999999976 6689999998853
No 48
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.10 E-value=3.4e-11 Score=77.65 Aligned_cols=47 Identities=23% Similarity=0.499 Sum_probs=39.7
Q ss_pred CCCCCCcccCCcCCCCceEE--cCCCCCc-ccHhhHHHHHhCCCCCcccCccCc
Q 043554 104 PATECPICLGEFVDGEKVRV--LPKCNHG-FHVRCIDTWLLSHSSCPNCRHSLL 154 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~--l~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~ 154 (192)
++.+|.||++.+.+. .. +| |||. |+..|+..|.+.+..||+||+++.
T Consensus 7 ~~~~C~IC~~~~~~~---~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNG---CIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCE---EEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCE---EEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 456899999987653 33 48 9999 899999999988889999999874
No 49
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.09 E-value=4.2e-11 Score=75.06 Aligned_cols=47 Identities=23% Similarity=0.535 Sum_probs=39.1
Q ss_pred CCCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcCC
Q 043554 103 IPATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLNN 156 (192)
Q Consensus 103 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 156 (192)
.+...|+||++.|.+. +.++ |||.||..|+..| ...||+||+.+...
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCe---EEcC-CCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 3567899999999875 5677 9999999999884 56799999988543
No 50
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.06 E-value=8e-11 Score=80.10 Aligned_cols=49 Identities=20% Similarity=0.151 Sum_probs=43.4
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcCC
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLNN 156 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 156 (192)
+...|+||++-|+++ .+++ |||.|+..||..|+..+.+||+||..+...
T Consensus 13 ~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDP---VRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp TTTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred hheECcccCchhcCC---eECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 467899999999886 6788 999999999999999888999999988543
No 51
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.05 E-value=6.1e-11 Score=76.18 Aligned_cols=49 Identities=20% Similarity=0.396 Sum_probs=39.7
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCc-ccHhhHHHHHhCCCCCcccCccCc
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHG-FHVRCIDTWLLSHSSCPNCRHSLL 154 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~ 154 (192)
.+..|.||++...+. .+..+| |||. |+..|+..|.+.+..||+||+++.
T Consensus 6 ~~~~C~IC~~~~~~~-~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG-NIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCE-EEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCe-EEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 456899999986553 122348 9998 999999999988889999999874
No 52
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.04 E-value=1.2e-10 Score=81.69 Aligned_cols=49 Identities=20% Similarity=0.163 Sum_probs=43.5
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcCC
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLNN 156 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 156 (192)
+...|+||++-|.++ .+++ |||.|+..||..|+..+.+||+||.++...
T Consensus 28 ~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 28 DEFRDPLMDTLMTDP---VRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp TTTBCTTTCSBCSSE---EEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred HhhCCcCccCcccCC---eECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 467899999999886 6677 999999999999999888999999988653
No 53
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.03 E-value=1.7e-10 Score=80.61 Aligned_cols=49 Identities=27% Similarity=0.215 Sum_probs=43.4
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCC-CcccHhhHHHHHhCCCCCcccCccCcCC
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCN-HGFHVRCIDTWLLSHSSCPNCRHSLLNN 156 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~-H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 156 (192)
++..|+||++-|+++ .+++ || |.|+..||..|+..+.+||+||.++...
T Consensus 21 ~~~~CpI~~~~m~dP---V~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDP---VVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp TTTBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred HhcCCcCccccccCC---eECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 467899999999986 5677 99 9999999999999888999999988654
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.01 E-value=1e-10 Score=84.00 Aligned_cols=45 Identities=22% Similarity=0.535 Sum_probs=38.9
Q ss_pred CCCCCcccCCcCCCCceEEc-CCCCCcccHhhHHHHHhCCCCCcccCccCcC
Q 043554 105 ATECPICLGEFVDGEKVRVL-PKCNHGFHVRCIDTWLLSHSSCPNCRHSLLN 155 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l-~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 155 (192)
...|+||++.|.++ ..+ + |||.||..||..|+. ..||+||..+..
T Consensus 22 ~~~C~IC~~~~~~p---v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 22 LLRCSRCTNILREP---VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp TTSCSSSCSCCSSC---BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred CCCCCCCChHhhCc---cEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 56899999999875 445 7 999999999999987 789999998844
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.00 E-value=8.4e-11 Score=87.41 Aligned_cols=48 Identities=21% Similarity=0.449 Sum_probs=40.6
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCC-CCcccCccCcC
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHS-SCPNCRHSLLN 155 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~l~~ 155 (192)
++..|+||++.|.++ ..++ |||.||..||..|++... +||+||.++..
T Consensus 30 ~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 30 AKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp GGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred cCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 457899999999876 4577 999999999999998654 89999997643
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.99 E-value=2.3e-10 Score=97.63 Aligned_cols=48 Identities=29% Similarity=0.722 Sum_probs=41.5
Q ss_pred CCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHh-CCCCCcccCccCcCC
Q 043554 105 ATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLL-SHSSCPNCRHSLLNN 156 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~~~ 156 (192)
..+|+||++.+.+ ...++ |||.||..|+..|+. ...+||+||..+...
T Consensus 332 ~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 3689999999865 46788 999999999999998 678899999988654
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.90 E-value=2.7e-10 Score=75.39 Aligned_cols=43 Identities=23% Similarity=0.642 Sum_probs=36.8
Q ss_pred CCCCCcccCCcCCCCceEEcCCCCCc-ccHhhHHHHHhCCCCCcccCccCcC
Q 043554 105 ATECPICLGEFVDGEKVRVLPKCNHG-FHVRCIDTWLLSHSSCPNCRHSLLN 155 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~~ 155 (192)
+..|+||++.+.+ ...+| |||. ||..|+..| ..||+||..+..
T Consensus 24 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 4589999998766 46778 9999 999999998 789999998754
No 58
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.84 E-value=6.4e-10 Score=93.03 Aligned_cols=52 Identities=29% Similarity=0.669 Sum_probs=39.9
Q ss_pred CCCCCCCcccCCcCCCCceE----EcCCCCCcccHhhHHHHHhCC-----------CCCcccCccCc
Q 043554 103 IPATECPICLGEFVDGEKVR----VLPKCNHGFHVRCIDTWLLSH-----------SSCPNCRHSLL 154 (192)
Q Consensus 103 ~~~~~C~ICl~~~~~~~~v~----~l~~C~H~FH~~Ci~~Wl~~~-----------~~CP~CR~~l~ 154 (192)
....+|+||++.+.++..+- ..++|+|.||..||.+||+.. .+||+||+++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 35678999999998744331 122599999999999999642 35999999875
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.84 E-value=7.8e-10 Score=84.29 Aligned_cols=49 Identities=35% Similarity=0.661 Sum_probs=41.5
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCC-CCCcccCccCcCC
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSH-SSCPNCRHSLLNN 156 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~l~~~ 156 (192)
++..|+||++.|.++ ..++ |||.||..||..|+..+ .+||+||..+...
T Consensus 17 ~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 17 SKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp GGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 457899999999876 4577 99999999999999754 4899999988654
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.82 E-value=1.6e-09 Score=74.96 Aligned_cols=48 Identities=25% Similarity=0.510 Sum_probs=38.7
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCC------CCCcc--cCcc-Cc
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSH------SSCPN--CRHS-LL 154 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~------~~CP~--CR~~-l~ 154 (192)
.+..|+||++.|.++ .+++.|||.|+..||..|+..+ .+||+ |+.. +.
T Consensus 6 ~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~ 62 (94)
T 2yu4_A 6 SGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR 62 (94)
T ss_dssp SCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC
T ss_pred cEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC
Confidence 467899999999875 4452399999999999999753 48999 9866 43
No 61
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.80 E-value=2e-09 Score=74.27 Aligned_cols=48 Identities=25% Similarity=0.688 Sum_probs=40.0
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhC--------CCCCcc--cCcc
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLS--------HSSCPN--CRHS 152 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~--------~~~CP~--CR~~ 152 (192)
+..+|+||++++..++.+...+ |||.||.+|+..|+.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 3568999999998877666677 9999999999999953 236999 9987
No 62
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.80 E-value=1.8e-09 Score=87.65 Aligned_cols=49 Identities=14% Similarity=0.116 Sum_probs=41.9
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhC-CCCCcccCccCcCC
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLS-HSSCPNCRHSLLNN 156 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~l~~~ 156 (192)
....|+||++-|.++ .+++ |||.||..||..|+.. ..+||+||.++...
T Consensus 207 ~~~~c~i~~~~~~dP---v~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 207 DYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp STTBCTTTCSBCSSE---EECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred cccCCcCcCCHhcCC---eECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 567899999999886 6788 9999999999999975 44599999988543
No 63
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.78 E-value=3.6e-09 Score=67.23 Aligned_cols=47 Identities=26% Similarity=0.571 Sum_probs=36.4
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCC--C---cccHhhHHHHHhC--CCCCcccCccCc
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCN--H---GFHVRCIDTWLLS--HSSCPNCRHSLL 154 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~--H---~FH~~Ci~~Wl~~--~~~CP~CR~~l~ 154 (192)
+...|.||+++.. +.+ ++| |. | .||..||.+|+.. +.+||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~--~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELG--NER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECS--CCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCC--Cce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4678999999843 233 577 55 4 8999999999963 568999998774
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=8.4e-09 Score=67.08 Aligned_cols=47 Identities=26% Similarity=0.654 Sum_probs=38.3
Q ss_pred CCCCCCCcccCCcCCCCceEEcCCCCCc-ccHhhHHHHHhCCCCCcccCccCcCCC
Q 043554 103 IPATECPICLGEFVDGEKVRVLPKCNHG-FHVRCIDTWLLSHSSCPNCRHSLLNNN 157 (192)
Q Consensus 103 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 157 (192)
.++..|.||++...+ +..+| |+|. ||..|+.. ...||+||+.+....
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~~~ 60 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQESF 60 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCCEE
T ss_pred CCCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhceE
Confidence 356789999998654 57899 9999 99999984 468999999886543
No 65
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=4.4e-09 Score=69.58 Aligned_cols=44 Identities=23% Similarity=0.638 Sum_probs=35.7
Q ss_pred CCCCCcccCCcCCCCceEEcCCCCCc-ccHhhHHHHHhCCCCCcccCccCcCC
Q 043554 105 ATECPICLGEFVDGEKVRVLPKCNHG-FHVRCIDTWLLSHSSCPNCRHSLLNN 156 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 156 (192)
+..|+||++.+.+ ...+| |||. ||..|+.. ...||+||..+...
T Consensus 25 ~~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 4579999999766 35678 9999 99999965 36799999988553
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.62 E-value=1.2e-08 Score=78.59 Aligned_cols=49 Identities=14% Similarity=0.111 Sum_probs=41.5
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCC-CCCcccCccCcCC
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSH-SSCPNCRHSLLNN 156 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~l~~~ 156 (192)
+...|+||++-|.++ .+++ |||.|+..||..|+..+ .+||+|+.++...
T Consensus 105 ~~f~CPI~~elm~DP---V~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 105 DYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp GGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred HhhcccCccccCCCC---eECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 467899999999985 6677 99999999999999753 4699999988543
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.61 E-value=1.2e-08 Score=68.37 Aligned_cols=44 Identities=30% Similarity=0.650 Sum_probs=36.8
Q ss_pred CCCCCcccCCcCCCCceEEcCCCCCc-ccHhhHHHHHhCCCCCcccCccCcCC
Q 043554 105 ATECPICLGEFVDGEKVRVLPKCNHG-FHVRCIDTWLLSHSSCPNCRHSLLNN 156 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 156 (192)
+..|.||++.+.+ +..+| |||. ||..|+..| ..||+||..+...
T Consensus 18 ~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 4579999998765 57788 9999 999999887 3899999988654
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.53 E-value=3.7e-08 Score=79.73 Aligned_cols=50 Identities=24% Similarity=0.488 Sum_probs=40.7
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCC--CCCcc--cCccCcCC
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSH--SSCPN--CRHSLLNN 156 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~--~~CP~--CR~~l~~~ 156 (192)
....|+||++.|.++ |+... |||.|++.||..|+..+ ..||+ ||..+...
T Consensus 180 ~el~CPIcl~~f~DP--Vts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 180 IELTCPITCKPYEAP--LISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR 233 (267)
T ss_dssp CCSBCTTTSSBCSSE--EEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGG
T ss_pred eeeECcCccCcccCC--eeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCchh
Confidence 456899999999876 55456 99999999999999754 46999 99977543
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.52 E-value=3.2e-08 Score=62.94 Aligned_cols=48 Identities=10% Similarity=0.058 Sum_probs=41.2
Q ss_pred CCCCcccCCcCCCCceEEc-CCCCCcccHhhHHHHHhCCCCCcccCccCcCCC
Q 043554 106 TECPICLGEFVDGEKVRVL-PKCNHGFHVRCIDTWLLSHSSCPNCRHSLLNNN 157 (192)
Q Consensus 106 ~~C~ICl~~~~~~~~v~~l-~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 157 (192)
..|+||++.++++ .++ + +||+|...||++|++.+.+||+.+.++...+
T Consensus 4 ~~CpIs~~~m~dP---V~~~~-sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~ 52 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPK-SRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 52 (61)
T ss_dssp CCCTTTCSCCSSE---EEETT-TTEEEEHHHHHHHHHHHSBCTTTCCBCCGGG
T ss_pred EEecCCCCCCCCC---EEeCC-CCcEEcHHHHHHHHHhCCCCcCCcCCCChhh
Confidence 5799999999975 445 6 9999999999999988788999999886544
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.45 E-value=3.6e-08 Score=83.27 Aligned_cols=44 Identities=27% Similarity=0.705 Sum_probs=37.5
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCc-ccHhhHHHHHhCCCCCcccCccCcC
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHG-FHVRCIDTWLLSHSSCPNCRHSLLN 155 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~l~~ 155 (192)
++..|+||++.+.+ ...+| |||. ||..|+..| ..||+||..+..
T Consensus 294 ~~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 46789999999866 46778 9999 999999998 679999998854
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.32 E-value=7.1e-07 Score=71.62 Aligned_cols=53 Identities=21% Similarity=0.631 Sum_probs=42.9
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCC--CCcccCccCcCCCCC
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHS--SCPNCRHSLLNNNER 159 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~--~CP~CR~~l~~~~~~ 159 (192)
....|.||.+-...+ ...++|+|.||..|+..|++.+. .||.|+..|....+.
T Consensus 179 ~i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~~ 233 (238)
T 3nw0_A 179 AVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPK 233 (238)
T ss_dssp TCCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCCC
T ss_pred CCCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Confidence 367899999998876 44556999999999999997644 799999998666443
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.18 E-value=1.1e-06 Score=60.74 Aligned_cols=47 Identities=23% Similarity=0.453 Sum_probs=37.4
Q ss_pred CCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHh-CCCCCcccCccCcCC
Q 043554 107 ECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLL-SHSSCPNCRHSLLNN 156 (192)
Q Consensus 107 ~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~~~ 156 (192)
-|.+|--.+. ...++.| |+|+||.+|+..|.+ ..++||.|+.++..-
T Consensus 3 fC~~C~~Pi~--iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCS--EEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeE--EEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 4777865544 4578899 999999999999985 467899999988543
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=97.59 E-value=0.00012 Score=49.75 Aligned_cols=62 Identities=24% Similarity=0.440 Sum_probs=46.2
Q ss_pred CCCCCCCcccCCcCCCCceEEcCCC-CCcccHhhHHHHHhCCCCCcccCccCcCCCCCCCCCCCCCCCC
Q 043554 103 IPATECPICLGEFVDGEKVRVLPKC-NHGFHVRCIDTWLLSHSSCPNCRHSLLNNNERSTASSSAAEEP 170 (192)
Q Consensus 103 ~~~~~C~ICl~~~~~~~~v~~l~~C-~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~~~~~~~~~~~~~~ 170 (192)
.+-..|-.||-+.+. .| . | .|.+|..|+...|.....||+|..+++.+-.......+...+.
T Consensus 26 ~G~~nCKsCWf~~k~--LV-~---C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~~~~PSAPP~~~ 88 (99)
T 2ko5_A 26 LGPQFCKSCWFENKG--LV-E---CNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRPSAAPTAPPTGA 88 (99)
T ss_dssp SCCCCCCSSCSCCSS--EE-E---CSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCTTTSCCCCCCSC
T ss_pred cCcccChhhccccCC--ee-e---ecchhhHHHHHHHHHhhccCCcccCCcCCcceecCcCCCCCCccc
Confidence 355679999966442 23 2 5 5999999999988888889999999988877666555554333
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.75 E-value=0.013 Score=37.31 Aligned_cols=45 Identities=29% Similarity=0.574 Sum_probs=33.7
Q ss_pred CCCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCC----CCCcccCc
Q 043554 103 IPATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSH----SSCPNCRH 151 (192)
Q Consensus 103 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~----~~CP~CR~ 151 (192)
.++..|.||.+ +..+.....|...||..|+...+... -.||.|..
T Consensus 10 ~~~~~C~vC~~----~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 10 APGARCGVCGD----GTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp CTTCCCTTTSC----CTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CCCCCcCCCCC----CCeEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 35668999974 34466666799999999998877542 25999965
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.67 E-value=0.0093 Score=40.70 Aligned_cols=35 Identities=11% Similarity=0.358 Sum_probs=26.0
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHH
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTW 139 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~W 139 (192)
++..|.||++.+..+....=+. |+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 3568999998754433333366 9999999999983
No 76
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=94.31 E-value=0.016 Score=36.40 Aligned_cols=49 Identities=20% Similarity=0.465 Sum_probs=36.2
Q ss_pred CCCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHh-----CCCCCcccCc
Q 043554 103 IPATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLL-----SHSSCPNCRH 151 (192)
Q Consensus 103 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~ 151 (192)
.++..|+||...+.+....+....|..=||..|+.--.. .+..||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 356789999999876666666667888899999854221 3456999965
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=93.10 E-value=0.088 Score=32.71 Aligned_cols=46 Identities=22% Similarity=0.608 Sum_probs=32.9
Q ss_pred CCCCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhC----CCCCcccCc
Q 043554 102 DIPATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLS----HSSCPNCRH 151 (192)
Q Consensus 102 ~~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~ 151 (192)
..++..|.+|.+. ..+.....|...||..|+..-+.. .-.||.|+.
T Consensus 8 ~~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 3456789999863 456666678899999999874432 225999964
No 78
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=92.92 E-value=0.21 Score=33.11 Aligned_cols=34 Identities=18% Similarity=0.427 Sum_probs=23.4
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHH
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTW 139 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~W 139 (192)
.|..|.||- .+..++.. ....|+-+||..|+.+-
T Consensus 14 ~D~~C~VC~-~~t~~~l~-pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCE-VWTAESLF-PCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTC-CCCSSCCS-SCSSSSSCCCHHHHHHH
T ss_pred CCcccCccc-ccccccee-ccccccccccHhhcccc
Confidence 577899995 34444322 22248999999999984
No 79
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=92.84 E-value=0.053 Score=41.42 Aligned_cols=48 Identities=25% Similarity=0.551 Sum_probs=36.2
Q ss_pred CCCCCcccCCcCCCCc---eEEcCCCCCcccHhhHHH------HHh-----CCCCCcccCcc
Q 043554 105 ATECPICLGEFVDGEK---VRVLPKCNHGFHVRCIDT------WLL-----SHSSCPNCRHS 152 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~---v~~l~~C~H~FH~~Ci~~------Wl~-----~~~~CP~CR~~ 152 (192)
+..|+||...|.+++. ++....|..=||..|+.- -+. ....||.|+..
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 4569999999998763 677777999999999732 111 15789999764
No 80
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=92.63 E-value=0.043 Score=34.17 Aligned_cols=48 Identities=21% Similarity=0.554 Sum_probs=32.7
Q ss_pred CCCCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhC----CCCCcccCccC
Q 043554 102 DIPATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLS----HSSCPNCRHSL 153 (192)
Q Consensus 102 ~~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~l 153 (192)
+.++..|.||.+. ..+.....|...||..|+..-+.. .-.||.|+...
T Consensus 6 d~~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 6 DHHMEFCRVCKDG----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCSSCTTTCCC----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred cCCCCcCCCCCCC----CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 3456789999852 344555568899999999854432 22599997654
No 81
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=91.75 E-value=0.16 Score=38.42 Aligned_cols=46 Identities=24% Similarity=0.477 Sum_probs=33.3
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhC----CCCCcccCccC
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLS----HSSCPNCRHSL 153 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~l 153 (192)
++..|.+|.+. ..+.....|...||..|+..-+.. .-.||.|+..-
T Consensus 3 ~~~~C~~C~~~----g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG----GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC----SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC----CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 46679999843 346666679999999998765543 23599997644
No 82
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=91.15 E-value=0.2 Score=31.53 Aligned_cols=35 Identities=29% Similarity=0.580 Sum_probs=27.2
Q ss_pred CCCCCCCCcccCCcCCCCceEEcC-CCCCcccHhhH
Q 043554 102 DIPATECPICLGEFVDGEKVRVLP-KCNHGFHVRCI 136 (192)
Q Consensus 102 ~~~~~~C~ICl~~~~~~~~v~~l~-~C~H~FH~~Ci 136 (192)
+.+...|.+|...+.+++..+... .|.--||..|+
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 345678999999998887777776 78888999997
No 83
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=90.86 E-value=0.069 Score=41.36 Aligned_cols=48 Identities=29% Similarity=0.499 Sum_probs=34.5
Q ss_pred CCCCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhC----CCCCcccCccC
Q 043554 102 DIPATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLS----HSSCPNCRHSL 153 (192)
Q Consensus 102 ~~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~l 153 (192)
+.++..|.+|.+. ..+.....|...||..|+..-+.. .-.||.|+..-
T Consensus 4 d~~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 4 DPNEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 3456789999743 456677789999999999765542 22599997643
No 84
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.43 E-value=0.056 Score=32.95 Aligned_cols=46 Identities=22% Similarity=0.583 Sum_probs=31.6
Q ss_pred CCCCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhC----CCCCcccCc
Q 043554 102 DIPATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLS----HSSCPNCRH 151 (192)
Q Consensus 102 ~~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~ 151 (192)
+.++..|.+|.+. ..+.....|...||..|+..=+.. .-.||.|+.
T Consensus 6 ~~~~~~C~vC~~~----g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS----SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC----CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4457789999864 345566679999999998854432 224888843
No 85
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=90.11 E-value=0.092 Score=33.86 Aligned_cols=50 Identities=20% Similarity=0.416 Sum_probs=35.1
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHh----CCCCCcccCccCc
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLL----SHSSCPNCRHSLL 154 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~----~~~~CP~CR~~l~ 154 (192)
+...|.||..... ++.++....|.--||..|+..-.. ..-.||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 4456999987653 445666667998999999875432 2346999977653
No 86
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=89.66 E-value=0.043 Score=33.96 Aligned_cols=49 Identities=24% Similarity=0.655 Sum_probs=33.8
Q ss_pred CCCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhC----CCCCcccCccCcC
Q 043554 103 IPATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLS----HSSCPNCRHSLLN 155 (192)
Q Consensus 103 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~l~~ 155 (192)
.++..|.+|... ..+.....|...||..|+..=+.. .-.||.|......
T Consensus 3 ~~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~ 55 (60)
T 2puy_A 3 IHEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLK 55 (60)
T ss_dssp CCCSSCTTTCCC----SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHH
T ss_pred CCCCCCcCCCCC----CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhc
Confidence 356789999863 345566679999999999854432 2259999765443
No 87
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=89.52 E-value=0.82 Score=29.61 Aligned_cols=49 Identities=18% Similarity=0.443 Sum_probs=33.7
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHH-----hCCCCCcccCccC
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWL-----LSHSSCPNCRHSL 153 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl-----~~~~~CP~CR~~l 153 (192)
+...| ||...+......+....|..=||..|+.--- .....||.|+...
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 34556 9998886555666666788889999984211 1345799997643
No 88
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=89.08 E-value=0.51 Score=28.10 Aligned_cols=44 Identities=20% Similarity=0.319 Sum_probs=31.4
Q ss_pred CCCcccCCcCCCCceEEcC-CCCCcccHhhHHHH----HhCCCCCcccC
Q 043554 107 ECPICLGEFVDGEKVRVLP-KCNHGFHVRCIDTW----LLSHSSCPNCR 150 (192)
Q Consensus 107 ~C~ICl~~~~~~~~v~~l~-~C~H~FH~~Ci~~W----l~~~~~CP~CR 150 (192)
.|.+|...+.+++..+... .|.-=||..|+.-- ...+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 5889999887666666666 58878999997421 13566799885
No 89
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=88.66 E-value=0.16 Score=32.03 Aligned_cols=45 Identities=22% Similarity=0.577 Sum_probs=31.9
Q ss_pred CCCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhC----CCCCcccCc
Q 043554 103 IPATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLS----HSSCPNCRH 151 (192)
Q Consensus 103 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~ 151 (192)
.++..|.||.+. ..+.....|...||..|+..-+.. .-.||.|..
T Consensus 6 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDG----GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCC----SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCC----CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 356789999863 345566679999999999854332 225999965
No 90
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=88.10 E-value=0.47 Score=31.76 Aligned_cols=47 Identities=28% Similarity=0.507 Sum_probs=33.1
Q ss_pred CCCCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhC----CCCCcccCcc
Q 043554 102 DIPATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLS----HSSCPNCRHS 152 (192)
Q Consensus 102 ~~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~ 152 (192)
+.++..|.+|.+. ..+.....|.-.||..|+..=+.. .-.||.|+..
T Consensus 22 d~n~~~C~vC~~~----g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP----GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS----SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC----CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 4456789999864 345566678899999999664432 2259999754
No 91
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=87.28 E-value=0.69 Score=33.18 Aligned_cols=48 Identities=23% Similarity=0.432 Sum_probs=33.3
Q ss_pred CCCCCCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHH------h-----CCCCCcccCc
Q 043554 100 GVDIPATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWL------L-----SHSSCPNCRH 151 (192)
Q Consensus 100 ~~~~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl------~-----~~~~CP~CR~ 151 (192)
+.+..+..|.||-+ +.++.....|-..||..||..=+ + ..=.|++|+.
T Consensus 52 d~Dg~~~~C~vC~d----GG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 52 DSDGMDEQCRWCAE----GGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CTTSCBSSCTTTCC----CSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCCCcCeecCC----CCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 44556678999985 34555656788999999998642 1 1236999955
No 92
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=86.76 E-value=0.53 Score=29.27 Aligned_cols=51 Identities=22% Similarity=0.528 Sum_probs=35.1
Q ss_pred CCCCCCCcccCCcC-CCCceEEcCCCCCcccHhhHHHHHh-------CCCCCcccCccC
Q 043554 103 IPATECPICLGEFV-DGEKVRVLPKCNHGFHVRCIDTWLL-------SHSSCPNCRHSL 153 (192)
Q Consensus 103 ~~~~~C~ICl~~~~-~~~~v~~l~~C~H~FH~~Ci~~Wl~-------~~~~CP~CR~~l 153 (192)
.++..|.||..... +...+.....|.-.||..|+..=+. ..-.|+.|+...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 35678999997653 3456666667999999999875221 223599996543
No 93
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=86.57 E-value=0.23 Score=34.57 Aligned_cols=46 Identities=26% Similarity=0.607 Sum_probs=31.8
Q ss_pred CCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhC----CCCCcccCc
Q 043554 106 TECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLS----HSSCPNCRH 151 (192)
Q Consensus 106 ~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~ 151 (192)
..|.||.+.-.+.+.+.....|...||..|+..-+.. .-.||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 3688888654444556666679999999998754432 225999974
No 94
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=86.40 E-value=1.1 Score=28.55 Aligned_cols=50 Identities=18% Similarity=0.399 Sum_probs=34.3
Q ss_pred CCCCCCCCcccCCc-CCCCceEEcCCCCCcccHhhHHHHHh--CCCCCcccCc
Q 043554 102 DIPATECPICLGEF-VDGEKVRVLPKCNHGFHVRCIDTWLL--SHSSCPNCRH 151 (192)
Q Consensus 102 ~~~~~~C~ICl~~~-~~~~~v~~l~~C~H~FH~~Ci~~Wl~--~~~~CP~CR~ 151 (192)
..++..|.||.+.- .+.+.+.....|.-.||..|+..-.. ..=.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 44577899998764 34456677778999999999864221 1225888854
No 95
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=85.66 E-value=0.24 Score=33.03 Aligned_cols=50 Identities=18% Similarity=0.450 Sum_probs=35.3
Q ss_pred CCCCCCcccCCcCC-CCceEEcCCCCCcccHhhHHHHHh--------CCCCCcccCccC
Q 043554 104 PATECPICLGEFVD-GEKVRVLPKCNHGFHVRCIDTWLL--------SHSSCPNCRHSL 153 (192)
Q Consensus 104 ~~~~C~ICl~~~~~-~~~v~~l~~C~H~FH~~Ci~~Wl~--------~~~~CP~CR~~l 153 (192)
.+..|.||...-.. ...+.....|...||..|+..=+. ..-.|+.|+...
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 35689999976443 345667778999999999875432 122599997654
No 96
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=85.02 E-value=0.36 Score=33.40 Aligned_cols=38 Identities=16% Similarity=0.301 Sum_probs=27.0
Q ss_pred CCCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHh
Q 043554 103 IPATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLL 141 (192)
Q Consensus 103 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~ 141 (192)
.++..|.||.+.-+.. .+.....|+..||..|+...+.
T Consensus 5 ~~~~~C~~C~~~g~~~-~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLL-DQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCTT-TSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCCc-CCeECCCCCCCcChHHhCCccc
Confidence 3577899998764322 2344456999999999987653
No 97
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=84.93 E-value=1.8 Score=29.87 Aligned_cols=34 Identities=26% Similarity=0.612 Sum_probs=25.0
Q ss_pred CCCCCCcccCCcC-----CCCceEEcCCCCCcccHhhHH
Q 043554 104 PATECPICLGEFV-----DGEKVRVLPKCNHGFHVRCID 137 (192)
Q Consensus 104 ~~~~C~ICl~~~~-----~~~~v~~l~~C~H~FH~~Ci~ 137 (192)
+...|.+|+..-. .++++.....|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 4568999987632 234566666799999999995
No 98
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=84.69 E-value=1.7 Score=31.56 Aligned_cols=47 Identities=21% Similarity=0.366 Sum_probs=33.7
Q ss_pred CCCCCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHh-----------CCCCCcccCc
Q 043554 101 VDIPATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLL-----------SHSSCPNCRH 151 (192)
Q Consensus 101 ~~~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~-----------~~~~CP~CR~ 151 (192)
.+..+..|.+|.+- .++.....|-..||..||..=+. ..=.||+|+.
T Consensus 59 ~Dg~~d~C~vC~~G----G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 59 SDGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TTSCBCSCSSSCCC----SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCCeecccCCC----CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 34567889999853 45566667999999999986442 1235999964
No 99
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=84.63 E-value=0.55 Score=27.66 Aligned_cols=44 Identities=27% Similarity=0.709 Sum_probs=29.5
Q ss_pred CCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhC----CCCCcccCc
Q 043554 107 ECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLS----HSSCPNCRH 151 (192)
Q Consensus 107 ~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~ 151 (192)
.|.||...-. .+.+.....|...||..|+..=+.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~-~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGE-DDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSC-CSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCC-CCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 4888986543 3455566679999999999643322 224999964
No 100
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=82.62 E-value=0.99 Score=31.03 Aligned_cols=48 Identities=23% Similarity=0.471 Sum_probs=35.0
Q ss_pred CCCCCcccCCcCCCCceEEcC-CCCCcccHhhHHHH------H----hCCCCCcccCcc
Q 043554 105 ATECPICLGEFVDGEKVRVLP-KCNHGFHVRCIDTW------L----LSHSSCPNCRHS 152 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~-~C~H~FH~~Ci~~W------l----~~~~~CP~CR~~ 152 (192)
...|.||...+.+....+... .|..=||..|+.-= + ..+..||.|+..
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence 457999999997777777765 68888999997321 1 034569999764
No 101
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=82.50 E-value=1.7 Score=28.88 Aligned_cols=51 Identities=20% Similarity=0.416 Sum_probs=34.7
Q ss_pred CCCCCCCcccCCc-CCCCceEEcCCCCCcccHhhHHHHHh--CCCCCcccCccC
Q 043554 103 IPATECPICLGEF-VDGEKVRVLPKCNHGFHVRCIDTWLL--SHSSCPNCRHSL 153 (192)
Q Consensus 103 ~~~~~C~ICl~~~-~~~~~v~~l~~C~H~FH~~Ci~~Wl~--~~~~CP~CR~~l 153 (192)
.++..|.||.+.- .+.+.+.....|.-.||..|+..-+. ..-.||.|....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 4567899998754 23446666667889999999875221 122599996543
No 102
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=82.00 E-value=0.27 Score=36.69 Aligned_cols=48 Identities=21% Similarity=0.525 Sum_probs=34.4
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHH-----hCCCCCcccCcc
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWL-----LSHSSCPNCRHS 152 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl-----~~~~~CP~CR~~ 152 (192)
+...| +|...+.+...+.....|..-||..|+.--- .....||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 45568 9998876666677777799999999984211 134579999763
No 103
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=81.39 E-value=0.48 Score=30.15 Aligned_cols=44 Identities=36% Similarity=0.822 Sum_probs=28.4
Q ss_pred CCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhC-----CCCCcccCc
Q 043554 107 ECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLS-----HSSCPNCRH 151 (192)
Q Consensus 107 ~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~ 151 (192)
.|.||...- +++.+.....|...||..|+..=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcC-CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 466776432 33456666679999999999843321 225888864
No 104
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=81.30 E-value=1.2 Score=33.85 Aligned_cols=44 Identities=27% Similarity=0.532 Sum_probs=30.2
Q ss_pred CCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhC----CCCCcccCcc
Q 043554 105 ATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLS----HSSCPNCRHS 152 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~ 152 (192)
+..|.+|.+. ..+.....|...||..|+..=+.. .-.||.|+..
T Consensus 2 ~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP----GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC----SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC----CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4579999854 334445568899999999653332 2259999765
No 105
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=79.50 E-value=5.4 Score=24.01 Aligned_cols=25 Identities=8% Similarity=0.070 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 043554 35 NMVIILAALLCALICALGLNSIVRC 59 (192)
Q Consensus 35 ~~~iil~~ll~~~i~~~~l~~~~~~ 59 (192)
.++|+++++.++++++++++.+.++
T Consensus 12 ~wiIi~svl~GLllL~li~~~LwK~ 36 (54)
T 2knc_A 12 IWWVLVGVLGGLLLLTILVLAMWKV 36 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4445555555555555555444444
No 106
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=79.39 E-value=2.3 Score=29.37 Aligned_cols=49 Identities=18% Similarity=0.484 Sum_probs=31.7
Q ss_pred CCCCCCCCcccCCcCCCCceEEcC--CCCCcccHhhHHHHHhC----CCCCcccCccCcCC
Q 043554 102 DIPATECPICLGEFVDGEKVRVLP--KCNHGFHVRCIDTWLLS----HSSCPNCRHSLLNN 156 (192)
Q Consensus 102 ~~~~~~C~ICl~~~~~~~~v~~l~--~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~l~~~ 156 (192)
..++..|.+|.+ +.++.... .|...||..|+. |.. +-.||.|+-.+..+
T Consensus 12 ~~~~~~C~~C~~----~G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 12 QMHEDYCFQCGD----GGELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp CSSCSSCTTTCC----CSEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCCCCCCCcCCC----CCcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 446778999983 33455554 488899999997 432 12488776544433
No 107
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=79.25 E-value=0.32 Score=31.06 Aligned_cols=47 Identities=28% Similarity=0.415 Sum_probs=32.1
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHH----hCCCCCcccCc
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWL----LSHSSCPNCRH 151 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl----~~~~~CP~CR~ 151 (192)
....| ||...+.+++..+....|..=||..|+.--- ..+..||.|+.
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 34468 7988766655566666788889999975421 23456999965
No 108
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=78.85 E-value=6.2 Score=23.73 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 043554 35 NMVIILAALLCALICALGLNSIVRC 59 (192)
Q Consensus 35 ~~~iil~~ll~~~i~~~~l~~~~~~ 59 (192)
.++|+++++.++++++++++.+.++
T Consensus 9 ~WiIi~svl~GLLLL~Lii~~LwK~ 33 (54)
T 2l8s_A 9 LWVILLSAFAGLLLLMLLILALWKI 33 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4555565555555555555544444
No 109
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=77.97 E-value=2.3 Score=29.51 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=24.3
Q ss_pred CCCCcccCCcCC------CCceEEcCCCCCcccHhhHHHH
Q 043554 106 TECPICLGEFVD------GEKVRVLPKCNHGFHVRCIDTW 139 (192)
Q Consensus 106 ~~C~ICl~~~~~------~~~v~~l~~C~H~FH~~Ci~~W 139 (192)
..|.||+..-.. ++++.....|+..||..|+..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 469999876422 2355565579999999998654
No 110
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=77.64 E-value=1.4 Score=28.18 Aligned_cols=46 Identities=26% Similarity=0.485 Sum_probs=31.0
Q ss_pred CCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHH---------HhCCCCCcccCcc
Q 043554 105 ATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTW---------LLSHSSCPNCRHS 152 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~W---------l~~~~~CP~CR~~ 152 (192)
...| ||...+.. ..++....|..=||..|+.-- ...+..||.|+..
T Consensus 16 ~~~C-~C~~~~~~-~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYC-ICRQPHNN-RFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCS-TTCCCCCS-SCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCEE-ECCCccCC-CCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 4457 89887753 345555568888999998321 1246789999653
No 111
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=76.67 E-value=2.2 Score=27.12 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=24.4
Q ss_pred CCCCCcccCCcCCCCceEEcCCCCCcccHhhHHH
Q 043554 105 ATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDT 138 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~ 138 (192)
+..|.+|...|.--..---...||.+||..|...
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 3589999999875433233346999999999643
No 112
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=76.53 E-value=6.4 Score=24.68 Aligned_cols=31 Identities=13% Similarity=0.297 Sum_probs=18.5
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 043554 28 NEANFDTNMVIILAALLCALICALGLNSIVR 58 (192)
Q Consensus 28 ~~~~~~~~~~iil~~ll~~~i~~~~l~~~~~ 58 (192)
+.+.||+-.+-+-++++..+++++++++++.
T Consensus 8 dpF~YDY~tLRigGLifA~vLfi~GI~iilS 38 (67)
T 2jp3_A 8 SPFYYDWESLQLGGLIFGGLLCIAGIALALS 38 (67)
T ss_dssp SGGGGGGHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcccchHHheecchhhHHHHHHHHHHHHHc
Confidence 4444666666666666666666666665554
No 113
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=76.19 E-value=1.3 Score=27.27 Aligned_cols=43 Identities=37% Similarity=0.564 Sum_probs=29.7
Q ss_pred CCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCccc
Q 043554 106 TECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNC 149 (192)
Q Consensus 106 ~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~C 149 (192)
..|--|+..|.+.. +...+.|++.|+.+|=.---..=.+||-|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccchhHHHHhhccCCcCC
Confidence 35999998886432 34566799999999943311334579988
No 114
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=76.19 E-value=14 Score=24.50 Aligned_cols=52 Identities=15% Similarity=0.319 Sum_probs=35.9
Q ss_pred CCCCCCcccCCcCCC---CceEEcCCCCCcccHhhHHHHHh-CCCCCcccCccCcC
Q 043554 104 PATECPICLGEFVDG---EKVRVLPKCNHGFHVRCIDTWLL-SHSSCPNCRHSLLN 155 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~---~~v~~l~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~l~~ 155 (192)
....|.||-+++-.. +...-...|+--.|..|++-=.+ -++.||.|+..+-.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 456899999986532 22222224777789999976554 46789999887753
No 115
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=75.80 E-value=5.2 Score=26.17 Aligned_cols=38 Identities=24% Similarity=0.367 Sum_probs=29.0
Q ss_pred CCCCCCcccCCcCCCCceEEcC-CCCCcccHhhHHHHHhC
Q 043554 104 PATECPICLGEFVDGEKVRVLP-KCNHGFHVRCIDTWLLS 142 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~-~C~H~FH~~Ci~~Wl~~ 142 (192)
....|.+|.+.+++..-| +.| .=+|.||..|-...++.
T Consensus 14 a~l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccCcee-eCCCccCCeeeccccHHHHHh
Confidence 356899999999887555 333 23699999999998864
No 116
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=75.68 E-value=2.5 Score=27.58 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=26.2
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHH
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTW 139 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~W 139 (192)
+...|.+|...|..-..---...||++||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 356899999999754333334469999999997653
No 117
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=75.12 E-value=1.1 Score=35.16 Aligned_cols=44 Identities=36% Similarity=0.822 Sum_probs=26.2
Q ss_pred CCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhC-----CCCCcccCc
Q 043554 107 ECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLS-----HSSCPNCRH 151 (192)
Q Consensus 107 ~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~ 151 (192)
.|.+|...- +++.+.....|...||..|+..=+.. .=.||.|+.
T Consensus 176 ~C~vC~~~~-~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCC-C--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCC-CCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 577886542 23455566679999999999843321 225999964
No 118
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=74.92 E-value=1.7 Score=41.11 Aligned_cols=49 Identities=24% Similarity=0.229 Sum_probs=41.8
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCC-CcccHhhHHHHHhCCCCCcccCccCcCC
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCN-HGFHVRCIDTWLLSHSSCPNCRHSLLNN 156 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~-H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 156 (192)
+...|+|-++-+.++ .+++ -| +.|-..+|.+|+..+.+||+=|+++...
T Consensus 890 ~~F~cPIs~~lM~DP---Vilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 890 DEFLDPLMYTIMKDP---VILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp GGGBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred HHhCCcchhhHHhCC---eEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 456899999999886 6777 76 6899999999999888999999888654
No 119
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=74.54 E-value=3.4 Score=27.30 Aligned_cols=53 Identities=21% Similarity=0.370 Sum_probs=36.0
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHh-------CCCCCcccCccCcCC
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLL-------SHSSCPNCRHSLLNN 156 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~-------~~~~CP~CR~~l~~~ 156 (192)
+...|.+|...|..-..---...||++||..|....+. ....|-.|...+...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~~ 67 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTRG 67 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHHC
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHhc
Confidence 45579999999875533333446999999999765331 223588887766544
No 120
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=74.44 E-value=2.6 Score=27.42 Aligned_cols=35 Identities=29% Similarity=0.471 Sum_probs=25.4
Q ss_pred CCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHH
Q 043554 105 ATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTW 139 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~W 139 (192)
...|.+|...|.--..---...||.+||..|....
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 45799999999754333334469999999997653
No 121
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=74.08 E-value=2.4 Score=28.17 Aligned_cols=49 Identities=18% Similarity=0.352 Sum_probs=32.3
Q ss_pred CCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHh------CCCCCcccCccC
Q 043554 105 ATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLL------SHSSCPNCRHSL 153 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~------~~~~CP~CR~~l 153 (192)
...|.+|...|.--..--....||++||..|...+.. ....|-.|-..+
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 74 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETI 74 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHH
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHH
Confidence 4579999999975433334446999999999766432 123466665444
No 122
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=73.44 E-value=4.6 Score=25.57 Aligned_cols=44 Identities=27% Similarity=0.650 Sum_probs=28.0
Q ss_pred CCCCCCcccCCcCCCCceEEcCC--CC-CcccHhhHHHHHhC----CCCCcccCcc
Q 043554 104 PATECPICLGEFVDGEKVRVLPK--CN-HGFHVRCIDTWLLS----HSSCPNCRHS 152 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~--C~-H~FH~~Ci~~Wl~~----~~~CP~CR~~ 152 (192)
+...| ||..... + .++.... |. .-||..|+. |.. +-.||.|+..
T Consensus 15 ~~~~C-~C~~~~~-g-~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 15 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp SCCCS-TTCCCSC-S-SEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCEE-ECCCCCC-C-CEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 34567 8987542 3 3444445 55 579999987 332 3369999764
No 123
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.03 E-value=3.2 Score=27.06 Aligned_cols=35 Identities=26% Similarity=0.473 Sum_probs=24.2
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHH
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDT 138 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~ 138 (192)
+...|.+|...|..-..---...||.+||..|...
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 34579999999865432223336999999999543
No 124
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=72.89 E-value=0.63 Score=32.93 Aligned_cols=48 Identities=17% Similarity=0.414 Sum_probs=31.5
Q ss_pred CCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCcc
Q 043554 105 ATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHS 152 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 152 (192)
...|..|...|..-..--....||.+||..|..........|-.|...
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 457999999987543333444699999999976655445668888543
No 125
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=72.75 E-value=1.3 Score=27.97 Aligned_cols=46 Identities=22% Similarity=0.556 Sum_probs=30.5
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHH---hCCCCCcccCc
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWL---LSHSSCPNCRH 151 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl---~~~~~CP~CR~ 151 (192)
+...| ||...+. ++..+....|..=||..|+.--- .....||.|+.
T Consensus 18 ~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 45568 9987765 44455666688889999985421 13446998854
No 126
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.62 E-value=0.95 Score=29.36 Aligned_cols=45 Identities=24% Similarity=0.669 Sum_probs=29.9
Q ss_pred CCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhC-----CCCCcccCc
Q 043554 106 TECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLS-----HSSCPNCRH 151 (192)
Q Consensus 106 ~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~ 151 (192)
..|.||...- ++..+.....|...||..|+..=|.. .=.||.|..
T Consensus 27 c~C~vC~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKH-EPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCC-CSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcC-CCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 3688887542 34456666679999999999743321 225888864
No 127
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=72.47 E-value=2.6 Score=29.84 Aligned_cols=34 Identities=18% Similarity=0.367 Sum_probs=24.7
Q ss_pred CCCCCcccCCcCCCCceEEcCCCCCcccHhhHHH
Q 043554 105 ATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDT 138 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~ 138 (192)
...|.+|...|..-..---...||++||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 4579999999975433333446999999999654
No 128
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=72.42 E-value=2.6 Score=30.31 Aligned_cols=35 Identities=17% Similarity=0.327 Sum_probs=25.3
Q ss_pred CCCCCCCcccCCcC-CCCceEEcCCCCCcccHhhHH
Q 043554 103 IPATECPICLGEFV-DGEKVRVLPKCNHGFHVRCID 137 (192)
Q Consensus 103 ~~~~~C~ICl~~~~-~~~~v~~l~~C~H~FH~~Ci~ 137 (192)
.++..|.+|...|. ....-+....|+|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 35678999999994 222234555699999999954
No 129
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=71.26 E-value=10 Score=23.94 Aligned_cols=34 Identities=18% Similarity=0.383 Sum_probs=18.3
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043554 30 ANFDTNMVIILAALLCALICALGLNSIVRCALRC 63 (192)
Q Consensus 30 ~~~~~~~~iil~~ll~~~i~~~~l~~~~~~~~~~ 63 (192)
+.||+-.+-+-++++..+++++++++++.-..+|
T Consensus 9 F~YDY~tLRiGGLifA~vLfi~GI~iilS~KckC 42 (72)
T 2jo1_A 9 FTYDYQSLQIGGLVIAGILFILGILIVLSRRCRC 42 (72)
T ss_dssp GGCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHhhccchHHHHHHHHHHHHHHHcCcccc
Confidence 3455555555555555566666665555433333
No 130
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=70.75 E-value=12 Score=21.47 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043554 35 NMVIILAALLCALICALGLNSIVRCAL 61 (192)
Q Consensus 35 ~~~iil~~ll~~~i~~~~l~~~~~~~~ 61 (192)
+..-+++.+++++++.+++++++|...
T Consensus 12 IA~gVVgGv~~v~ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEeehHHHHHHHHHHHHHHHHhhhhh
Confidence 334444444444444555555555443
No 131
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.37 E-value=4.8 Score=24.72 Aligned_cols=41 Identities=20% Similarity=0.517 Sum_probs=28.3
Q ss_pred CCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcC
Q 043554 105 ATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLN 155 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 155 (192)
...|+-|-..+...+.+... -+..||.+| ..|-.|..+|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEY--GGQTWHEHC--------FLCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECS--TTCCEETTT--------CBCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEEEE--CccccCccc--------CeECCCCCcCCC
Confidence 35799998888765444332 577899888 357888777754
No 132
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=69.98 E-value=2.6 Score=32.57 Aligned_cols=35 Identities=20% Similarity=0.382 Sum_probs=25.6
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHH
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDT 138 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~ 138 (192)
++..|.+|...|.--..---...||++||..|...
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 35789999999875433334446999999999654
No 133
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=69.49 E-value=5 Score=24.65 Aligned_cols=42 Identities=17% Similarity=0.490 Sum_probs=28.5
Q ss_pred CCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcCC
Q 043554 105 ATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLNN 156 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 156 (192)
...|+.|-+.+...+.+... -+..||.+| ..|-.|+..|...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~ 46 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEY--KGSSWHETC--------FICHRCQQPIGTK 46 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEE--TTEEEETTT--------TCCSSSCCCCCSS
T ss_pred CCCCccCCCcccCCceEEEE--CcCeecccC--------CcccccCCccCCC
Confidence 34799998888876544332 467888887 3578887776543
No 134
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.27 E-value=0.85 Score=30.59 Aligned_cols=48 Identities=21% Similarity=0.481 Sum_probs=33.3
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhC----CCCCcccCcc
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLS----HSSCPNCRHS 152 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~ 152 (192)
++..|.||...-. .+.+.....|...||..|+..=+.. .-.||.|+..
T Consensus 15 ~~~~C~vC~~~~~-~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDE-DDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGG-GGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCC-CCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 4668999987643 3456666679999999999743322 2259999664
No 135
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=69.11 E-value=2.2 Score=28.85 Aligned_cols=44 Identities=27% Similarity=0.479 Sum_probs=29.7
Q ss_pred CCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHh---CCCCCcccCc
Q 043554 106 TECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLL---SHSSCPNCRH 151 (192)
Q Consensus 106 ~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~---~~~~CP~CR~ 151 (192)
..| ||-.....+ .++....|.--||..|+..=.. ....||.|+.
T Consensus 29 vrC-iC~~~~~~~-~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDG-YMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSS-CEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCC-cEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 457 887765544 4556667999999999864222 2346999964
No 136
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.84 E-value=7.9 Score=23.72 Aligned_cols=40 Identities=30% Similarity=0.555 Sum_probs=24.4
Q ss_pred CCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCc
Q 043554 105 ATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLL 154 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 154 (192)
...|+.|-+.+...+.+... -+..||.+| ..|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVA--LDRVFHVGC--------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEEC--SSSEECTTT--------CBCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEEE--CCCeEcccC--------CcccccCCcCC
Confidence 35688887776654333322 456777777 24777777663
No 137
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=68.76 E-value=2.9 Score=32.55 Aligned_cols=36 Identities=22% Similarity=0.399 Sum_probs=26.6
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHH
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTW 139 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~W 139 (192)
++..|.+|...|.--..---...||++||..|-...
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 356899999999754333344469999999997653
No 138
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=68.48 E-value=8.1 Score=21.94 Aligned_cols=25 Identities=8% Similarity=0.070 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 043554 35 NMVIILAALLCALICALGLNSIVRC 59 (192)
Q Consensus 35 ~~~iil~~ll~~~i~~~~l~~~~~~ 59 (192)
.++|+++++.+++++.++++.+.++
T Consensus 10 ~wiIi~s~l~GLllL~li~~~LwK~ 34 (42)
T 2k1a_A 10 IWWVLVGVLGGLLLLTILVLAMWKV 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445555555555555444444443
No 139
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.16 E-value=7 Score=24.65 Aligned_cols=42 Identities=21% Similarity=0.566 Sum_probs=30.5
Q ss_pred CCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcCC
Q 043554 105 ATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLNN 156 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 156 (192)
...|+.|-..+...+.+... -+..||.+| ..|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEY--KGTVWHKDC--------FTCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEEC--SSCEEETTT--------CCCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceEEEE--Ccccccccc--------CchhhCCCccCCC
Confidence 35799999998876665433 577899888 3588888877543
No 140
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.87 E-value=6.7 Score=24.38 Aligned_cols=43 Identities=23% Similarity=0.562 Sum_probs=30.4
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcCC
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLNN 156 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 156 (192)
....|+-|-..+...+.+... -+..||.+| ..|-.|..+|...
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~~ 52 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPEG 52 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE--TTEEECTTT--------CCCTTTCCCCGGG
T ss_pred CCCCchhcCCccCCCceEEEe--CccEecccc--------CeECCCCCCCCCC
Confidence 356899999988765554332 567899888 3588888777554
No 141
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.40 E-value=5.4 Score=24.90 Aligned_cols=40 Identities=30% Similarity=0.606 Sum_probs=29.9
Q ss_pred CCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcC
Q 043554 105 ATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLN 155 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 155 (192)
...|+.|-+.+...+.+.. -+..||.+| ..|-.|+..|..
T Consensus 9 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSS---LGKDWHKFC--------LKCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEE---TTEEEETTT--------CBCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEEE---CCeEeeCCC--------CCCCCCCCccCC
Confidence 4579999999887665543 567899888 358888887753
No 142
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.34 E-value=8.6 Score=23.58 Aligned_cols=40 Identities=25% Similarity=0.614 Sum_probs=28.1
Q ss_pred CCCCCcccCCcCC--CCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCc
Q 043554 105 ATECPICLGEFVD--GEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLL 154 (192)
Q Consensus 105 ~~~C~ICl~~~~~--~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 154 (192)
...|+-|-+.+.. .+.+... -+..||.+|+ .|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a--~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISF--EERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEEC--SSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceEEE--CCcccCcccC--------EeccCCCcCC
Confidence 4579999988875 3333332 5788998883 5888888775
No 143
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=64.18 E-value=2.3 Score=22.28 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=19.8
Q ss_pred CCCCcccCCcCCCCceEEcCCCCCcccHhhH
Q 043554 106 TECPICLGEFVDGEKVRVLPKCNHGFHVRCI 136 (192)
Q Consensus 106 ~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci 136 (192)
..|+.|-...-..+++.. -|..||+.|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~---~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNC---LDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCS---SSSCCCGGGC
T ss_pred CcCCccCCEEecceeEEE---CCeEecccCC
Confidence 469999887766555432 5788999884
No 144
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=63.60 E-value=4.1 Score=24.89 Aligned_cols=42 Identities=24% Similarity=0.603 Sum_probs=31.1
Q ss_pred CCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcCC
Q 043554 105 ATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLNN 156 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 156 (192)
...|+-|-..+...+.+... -+..||..|+ .|-.|...|...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCCC
Confidence 45899999998877655432 5678998884 588888877554
No 145
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=62.36 E-value=5.9 Score=26.44 Aligned_cols=43 Identities=28% Similarity=0.669 Sum_probs=26.9
Q ss_pred CCCCCcccCCcCCCCceEEcCC--CC-CcccHhhHHHHHhC----CCCCcccCcc
Q 043554 105 ATECPICLGEFVDGEKVRVLPK--CN-HGFHVRCIDTWLLS----HSSCPNCRHS 152 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~--C~-H~FH~~Ci~~Wl~~----~~~CP~CR~~ 152 (192)
...| ||..... + .++.... |. .-||..|+. +.. +-.||.|+..
T Consensus 36 ~~yC-iC~~~~~-g-~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 36 PTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CBCS-TTCCBCC-S-CCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CcEE-ECCCCCC-C-CEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 4456 9987643 3 3444444 54 569999987 332 3469999763
No 146
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=62.19 E-value=8.1 Score=24.19 Aligned_cols=32 Identities=22% Similarity=0.489 Sum_probs=24.3
Q ss_pred CCCCCCCCcccCCcCCCCceEEcCCC-CCcccHhhHHH
Q 043554 102 DIPATECPICLGEFVDGEKVRVLPKC-NHGFHVRCIDT 138 (192)
Q Consensus 102 ~~~~~~C~ICl~~~~~~~~v~~l~~C-~H~FH~~Ci~~ 138 (192)
+.+..-|.||.++ ..++-+. | +-+||..|..+
T Consensus 5 ~ee~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE 37 (67)
T 2d8v_A 5 SSGLPWCCICNED----ATLRCAG-CDGDLYCARCFRE 37 (67)
T ss_dssp CCCCSSCTTTCSC----CCEEETT-TTSEEECSSHHHH
T ss_pred CcCCCeeEEeCCC----CeEEecC-CCCceehHHHHHH
Confidence 3356679999877 3466665 8 68999999877
No 147
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=61.68 E-value=5 Score=25.71 Aligned_cols=47 Identities=19% Similarity=0.345 Sum_probs=30.3
Q ss_pred CCCCCCcccCCcCCCCceEEcC--CCCCcccHhhHHHHH---------hCCCCCcccCcc
Q 043554 104 PATECPICLGEFVDGEKVRVLP--KCNHGFHVRCIDTWL---------LSHSSCPNCRHS 152 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~--~C~H~FH~~Ci~~Wl---------~~~~~CP~CR~~ 152 (192)
....| ||-.....+ .++... .|..=||..|+.--- ..+..||.|+..
T Consensus 15 ~~~~C-iC~~~~~~g-~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLETD-SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCCCS-CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCCCC-CEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 34567 898774443 445554 588889999985311 135579999764
No 148
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=61.21 E-value=1.7 Score=36.71 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=0.0
Q ss_pred CCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHh-------CCCCCcccCccC
Q 043554 105 ATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLL-------SHSSCPNCRHSL 153 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~-------~~~~CP~CR~~l 153 (192)
...|.+|...|..-..-.....||++||..|-..++. ....|-.|-..+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 4679999998864422223336999999999876652 123577776554
No 149
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.07 E-value=10 Score=23.59 Aligned_cols=40 Identities=25% Similarity=0.611 Sum_probs=27.9
Q ss_pred CCCCCcccCCcCC--CCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCc
Q 043554 105 ATECPICLGEFVD--GEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLL 154 (192)
Q Consensus 105 ~~~C~ICl~~~~~--~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 154 (192)
...|+.|-..+.. .+++... -+..||.+| ..|-.|+..|.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a--~~~~wH~~C--------F~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICF--QDSQWHSEC--------FNCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEE--TTEEEEGGG--------CBCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCceeEEE--CCcccCccc--------CChhhCCCcCC
Confidence 3579999998885 3333332 567899988 35888877775
No 150
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=60.90 E-value=19 Score=19.98 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 043554 34 TNMVIILAALLCALICALGLNSIVR 58 (192)
Q Consensus 34 ~~~~iil~~ll~~~i~~~~l~~~~~ 58 (192)
....++++++.+++..++++...++
T Consensus 11 ~i~lII~~vmaGiIG~IllI~y~I~ 35 (40)
T 1afo_A 11 EITLIIFGVMAGVIGTILLISYGIR 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666555555544444
No 151
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=60.67 E-value=7.8 Score=32.59 Aligned_cols=45 Identities=20% Similarity=0.397 Sum_probs=29.1
Q ss_pred CCCCcccCCcCCCCceEEcCCCCCcccHh--hHHHHHhC--CCCCcccCccC
Q 043554 106 TECPICLGEFVDGEKVRVLPKCNHGFHVR--CIDTWLLS--HSSCPNCRHSL 153 (192)
Q Consensus 106 ~~C~ICl~~~~~~~~v~~l~~C~H~FH~~--Ci~~Wl~~--~~~CP~CR~~l 153 (192)
..|++=...+..+ ++-.. |.|+-|.+ =+.....+ .-.||+|...+
T Consensus 250 L~CPlS~~ri~~P--vRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~ 298 (371)
T 3i2d_A 250 LQCPISYTRMKYP--SKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDI 298 (371)
T ss_dssp SBCTTTSSBCSSE--EEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBC
T ss_pred ecCCCcccccccc--CcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCccc
Confidence 4699888877665 66676 99984433 33332222 33599998876
No 152
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=60.59 E-value=8.9 Score=28.30 Aligned_cols=38 Identities=32% Similarity=0.582 Sum_probs=27.9
Q ss_pred CCCCCCCCCCcccCCcCCCCceEEcC--CCCCcccHhhHHHHHh
Q 043554 100 GVDIPATECPICLGEFVDGEKVRVLP--KCNHGFHVRCIDTWLL 141 (192)
Q Consensus 100 ~~~~~~~~C~ICl~~~~~~~~v~~l~--~C~H~FH~~Ci~~Wl~ 141 (192)
+.+..+..|.||-+ +..+.... .|...||.+||..++.
T Consensus 74 DeDG~~~yC~wC~~----Gg~l~~Cdn~~C~r~FC~~CI~~nvG 113 (159)
T 3a1b_A 74 DDDGYQSYCTICCG----GREVLMCGNNNCCRCFCVECVDLLVG 113 (159)
T ss_dssp CTTSSBSSCTTTSC----CSEEEECSSTTTCCEEEHHHHHHHTC
T ss_pred CCCCCcceeeEecC----CCeEEeeCCCCCCCchhHHHHHHhcC
Confidence 33445678999975 34566655 5889999999999874
No 153
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.34 E-value=7.6 Score=24.77 Aligned_cols=43 Identities=26% Similarity=0.525 Sum_probs=31.0
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcCCC
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLNNN 157 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~~ 157 (192)
....|+.|-..+...+.+.. -+..||.+| ..|-.|+..|....
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a---~~~~wH~~C--------F~C~~C~~~L~~~~ 56 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCV---NGHFFHRSC--------FRCHTCEATLWPGG 56 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCB---TTBCCBTTT--------CBCSSSCCBCCTTS
T ss_pred CCCCCcccCCCcccceEEEE---CCCeeCCCc--------CEEcCCCCCcCCCc
Confidence 34679999998876665542 567899988 35888887775543
No 154
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=59.44 E-value=2 Score=29.59 Aligned_cols=26 Identities=27% Similarity=0.715 Sum_probs=16.9
Q ss_pred CCCCcccHhhHHHHHhCCCCCcccCccCcCC
Q 043554 126 KCNHGFHVRCIDTWLLSHSSCPNCRHSLLNN 156 (192)
Q Consensus 126 ~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 156 (192)
.||+.|. .. +.....||.|++...+.
T Consensus 72 ~CG~~F~----~~-~~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 72 KCGFVFK----AE-INIPSRCPKCKSEWIEE 97 (105)
T ss_dssp TTCCBCC----CC-SSCCSSCSSSCCCCBCC
T ss_pred hCcCeec----cc-CCCCCCCcCCCCCccCC
Confidence 4999991 11 23456799999876544
No 155
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=59.09 E-value=1.6 Score=28.31 Aligned_cols=44 Identities=36% Similarity=0.822 Sum_probs=28.2
Q ss_pred CCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhC----C-CCCcccCc
Q 043554 107 ECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLS----H-SSCPNCRH 151 (192)
Q Consensus 107 ~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~----~-~~CP~CR~ 151 (192)
.|.||...- +.+.+.....|...||..|+..-|.. . =.||.|+.
T Consensus 28 ~C~vC~~~~-d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCC-CCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 466665442 33456666678999999999854432 1 25998875
No 156
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=58.90 E-value=2.8 Score=28.39 Aligned_cols=40 Identities=23% Similarity=0.561 Sum_probs=24.8
Q ss_pred CCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCc
Q 043554 106 TECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLL 154 (192)
Q Consensus 106 ~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 154 (192)
..|++|..+++-.. ++.+|..|-.. ++....||-|.++|.
T Consensus 33 ~~CP~Cq~eL~~~g--------~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQDN--------GHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEET--------TEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred ccCccCCCcceecC--------CEEECccccch-hhccccCcchhhHHH
Confidence 58999998865432 23335555333 244556999988774
No 157
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=58.66 E-value=6.2 Score=28.91 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=29.6
Q ss_pred CCCCCCcccCCcCCCC-ceEEcCCCCCcccHhhHHHHHhCCC--CCcccCc
Q 043554 104 PATECPICLGEFVDGE-KVRVLPKCNHGFHVRCIDTWLLSHS--SCPNCRH 151 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~-~v~~l~~C~H~FH~~Ci~~Wl~~~~--~CP~CR~ 151 (192)
++..|.+|...|.--. .-.+...|+|.+|..|- .|..... .|=+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 5779999999875321 12344469999999996 2333222 2666643
No 158
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=58.63 E-value=6.4 Score=24.54 Aligned_cols=42 Identities=12% Similarity=0.164 Sum_probs=21.5
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccH-hhHHHHHhCCCCCcccC
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHV-RCIDTWLLSHSSCPNCR 150 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~-~Ci~~Wl~~~~~CP~CR 150 (192)
+-..|..|...+.... .... =+..||. .|..+- -...|-.|.
T Consensus 26 ~CF~C~~C~~~L~~~~-~~~~--~g~~yC~~~cy~~~--f~~~C~~C~ 68 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGG-HAEH--EGKPYCNHPCYSAM--FGPKGFGRG 68 (76)
T ss_dssp TTCBCTTTCCBCCTTT-EEEE--TTEEEETTTHHHHH--SSCCCSSCC
T ss_pred CCCCccccCccCCCCc-eECc--CCeEeeCHHHHHHH--hCccCCCcC
Confidence 3456777766665542 2111 3556666 466542 233465553
No 159
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.31 E-value=8.8 Score=24.36 Aligned_cols=40 Identities=25% Similarity=0.599 Sum_probs=29.9
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCc
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLL 154 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 154 (192)
....|+-|-..+...+.+.. -+..||.+| ..|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA---LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE---TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE---CCccccccc--------CCcCcCCCCcC
Confidence 34679999999887665554 467899888 35888888774
No 160
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=57.49 E-value=9.4 Score=31.95 Aligned_cols=46 Identities=20% Similarity=0.315 Sum_probs=29.8
Q ss_pred CCCCcccCCcCCCCceEEcCCCCCc--ccHhhHHHHHhC--CCCCcccCccCc
Q 043554 106 TECPICLGEFVDGEKVRVLPKCNHG--FHVRCIDTWLLS--HSSCPNCRHSLL 154 (192)
Q Consensus 106 ~~C~ICl~~~~~~~~v~~l~~C~H~--FH~~Ci~~Wl~~--~~~CP~CR~~l~ 154 (192)
..|++=...++.+ ++-.. |.|. |=..=+.....+ .-.||+|...+.
T Consensus 216 L~CPlS~~ri~~P--~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLTIP--CRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCSSE--EEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeCCCccceeccC--CcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 4699888777665 66666 9998 443333333333 335999988764
No 161
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=57.08 E-value=18 Score=22.66 Aligned_cols=6 Identities=33% Similarity=0.689 Sum_probs=3.2
Q ss_pred CCCccc
Q 043554 127 CNHGFH 132 (192)
Q Consensus 127 C~H~FH 132 (192)
|.|.|-
T Consensus 59 C~hr~q 64 (70)
T 2klu_A 59 SPHRFQ 64 (70)
T ss_dssp CCCCCC
T ss_pred CcHHHh
Confidence 555554
No 162
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=56.91 E-value=2.7 Score=25.62 Aligned_cols=42 Identities=31% Similarity=0.678 Sum_probs=26.8
Q ss_pred CCCCCcccCCcCCCCceEEcCC--CC-CcccHhhHHHHHhC----CCCCcccCc
Q 043554 105 ATECPICLGEFVDGEKVRVLPK--CN-HGFHVRCIDTWLLS----HSSCPNCRH 151 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~--C~-H~FH~~Ci~~Wl~~----~~~CP~CR~ 151 (192)
..-| ||.... .+ .++.... |. .-||..|+. +.. +-.||.|+.
T Consensus 9 ~~yC-~C~~~~-~g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVS-YG-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCC-CC-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 3456 898754 23 4555555 55 589999987 332 335999954
No 163
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=56.16 E-value=9.6 Score=24.31 Aligned_cols=32 Identities=13% Similarity=0.421 Sum_probs=20.0
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 043554 27 VNEANFDTNMVIILAALLCALICALGLNSIVR 58 (192)
Q Consensus 27 ~~~~~~~~~~~iil~~ll~~~i~~~~l~~~~~ 58 (192)
.+.+.||+-.+-+-++++..+++++++++++.
T Consensus 9 ~dpF~YDY~tLRigGLifA~vLfi~GI~iilS 40 (74)
T 2zxe_G 9 DERFTYDYYRLRVVGLIVAAVLCVIGIIILLA 40 (74)
T ss_dssp GGGGCCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCcccchHHheeccchhHHHHHHHHHHHHHc
Confidence 34455666666666666666666666665554
No 164
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=55.80 E-value=9.1 Score=26.42 Aligned_cols=36 Identities=17% Similarity=0.350 Sum_probs=22.0
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHh
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLL 141 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~ 141 (192)
.-..|..|-..+..++..... =+..||..|....+.
T Consensus 35 ~CF~C~~C~~~L~~g~~f~~~--~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRYLLI--NSDIVCEQDIYEWTK 70 (123)
T ss_dssp TTCBCTTTCCBCCTTCEEEEC--SSSEEEGGGHHHHHH
T ss_pred ccCccccCCCCCCCCCcEEee--CCEEEcHHHhHHHhc
Confidence 456677777776554444332 466777777776653
No 165
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=55.52 E-value=0.99 Score=31.39 Aligned_cols=46 Identities=22% Similarity=0.557 Sum_probs=30.5
Q ss_pred CCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhC----CCCCcccCccC
Q 043554 107 ECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLS----HSSCPNCRHSL 153 (192)
Q Consensus 107 ~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~l 153 (192)
.|.||...-. +..+.....|...||..|+..=+.. .-.||.|+..+
T Consensus 60 ~C~~C~~~~~-~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSEN-DDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTT-TTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCC-CCceEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 5888876533 3455666679999999998853322 22488886544
No 166
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=55.51 E-value=25 Score=20.06 Aligned_cols=24 Identities=4% Similarity=0.253 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 043554 35 NMVIILAALLCALICALGLNSIVRC 59 (192)
Q Consensus 35 ~~~iil~~ll~~~i~~~~l~~~~~~ 59 (192)
....+++ ++.++++.++++.++|.
T Consensus 14 Ia~~vVG-vll~vi~~l~~~~~~RR 37 (44)
T 2jwa_A 14 IISAVVG-ILLVVVLGVVFGILIKR 37 (44)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHH-HHHHHHHHHHHHhheeh
Confidence 3334444 33333334444444443
No 167
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=55.23 E-value=2.8 Score=26.68 Aligned_cols=45 Identities=20% Similarity=0.372 Sum_probs=30.7
Q ss_pred CCcccCCcCCCCceEEcCCCCCcccHhhHHHHHh-----CCCCCcccCcc
Q 043554 108 CPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLL-----SHSSCPNCRHS 152 (192)
Q Consensus 108 C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~ 152 (192)
--||...+..+...+....|.-=||..|+.---. ....||.|+..
T Consensus 12 yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 12 YCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp ETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred EEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 3388877765556666667888899999853211 34569999754
No 168
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=54.71 E-value=3.2 Score=24.43 Aligned_cols=41 Identities=22% Similarity=0.553 Sum_probs=26.4
Q ss_pred cccCCcCCCCceEEcCCCCCcccHhhHHHHH---hCCCCCcccCc
Q 043554 110 ICLGEFVDGEKVRVLPKCNHGFHVRCIDTWL---LSHSSCPNCRH 151 (192)
Q Consensus 110 ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl---~~~~~CP~CR~ 151 (192)
||..... +...+....|+.=||..|+.--- ..+..||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6766554 33455555688889999985321 23456998864
No 169
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=54.50 E-value=2.9 Score=25.52 Aligned_cols=42 Identities=26% Similarity=0.611 Sum_probs=26.1
Q ss_pred CCCCCcccCCcCCCCceEEcCC--CC-CcccHhhHHHHHhC----CCCCcccCc
Q 043554 105 ATECPICLGEFVDGEKVRVLPK--CN-HGFHVRCIDTWLLS----HSSCPNCRH 151 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~--C~-H~FH~~Ci~~Wl~~----~~~CP~CR~ 151 (192)
...| ||.... . ..++.... |. .-||..|+. +.. +-.||.|+.
T Consensus 10 ~~~C-~C~~~~-~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVS-Y-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEEC-C-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcC-C-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 3456 898753 2 34555555 44 579999987 332 335999854
No 170
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=54.31 E-value=35 Score=21.33 Aligned_cols=9 Identities=22% Similarity=0.353 Sum_probs=4.3
Q ss_pred HHHHHHHHH
Q 043554 38 IILAALLCA 46 (192)
Q Consensus 38 iil~~ll~~ 46 (192)
|+|+..+.+
T Consensus 12 ivlGg~~~l 20 (70)
T 2klu_A 12 IVLGGVAGL 20 (70)
T ss_dssp HHHHHHHHH
T ss_pred HHHhHHHHH
Confidence 455544443
No 171
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=54.05 E-value=2.2 Score=26.21 Aligned_cols=36 Identities=22% Similarity=0.585 Sum_probs=23.0
Q ss_pred CCCCCcccCCcCCCCceEEcC--C--CCCcccHhhHHHHH
Q 043554 105 ATECPICLGEFVDGEKVRVLP--K--CNHGFHVRCIDTWL 140 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~--~--C~H~FH~~Ci~~Wl 140 (192)
-..|+-|...++..+....+. . |++.|+..|...|-
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~ 45 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWE 45 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcc
Confidence 347899988887765432222 2 66777777776664
No 172
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=53.62 E-value=0.95 Score=24.68 Aligned_cols=15 Identities=20% Similarity=0.636 Sum_probs=11.0
Q ss_pred CCCCCcccCCcCCCC
Q 043554 105 ATECPICLGEFVDGE 119 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~ 119 (192)
...|++|+.++...+
T Consensus 5 GFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 5 GFICPQCMKSLGSAD 19 (34)
T ss_dssp EEECTTTCCEESSHH
T ss_pred ccCCcHHHHHcCCHH
Confidence 467999988876654
No 173
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=53.17 E-value=5.9 Score=25.06 Aligned_cols=40 Identities=28% Similarity=0.582 Sum_probs=26.6
Q ss_pred CCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcC
Q 043554 105 ATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLN 155 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 155 (192)
...|+.|-+.+...+.+.. -+..||.+|+ .|-.|+.+|..
T Consensus 7 ~~~C~~C~~~I~~~~~~~a---~~~~~H~~CF--------~C~~C~~~L~~ 46 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQC---DGRSFHRCCF--------LCMVCRKNLDS 46 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEE---TTEEEESSSE--------ECSSSCCEECS
T ss_pred CCcCcCcCccccCceeEEe---CCcccccccC--------ccCCCCCCCCC
Confidence 3578899888876664433 5678887773 37777776644
No 174
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.00 E-value=13 Score=24.07 Aligned_cols=41 Identities=22% Similarity=0.519 Sum_probs=28.2
Q ss_pred CCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcCC
Q 043554 105 ATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLNN 156 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 156 (192)
...|+-|-..+...+.+. . -+..||.+|+ .|-.|...|...
T Consensus 15 ~~~C~~C~~~I~~~~~v~--a-~~~~~H~~CF--------~C~~C~~~L~~~ 55 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLL--A-NQQVFHISCF--------RCSYCNNKLSLG 55 (91)
T ss_dssp SCBCTTTCCBCCTTSEEE--C-SSSEEETTTC--------BCTTTCCBCCTT
T ss_pred CCcCccCCCccCCceeEE--E-CCCEECCCCC--------eeCCCCCCCCCC
Confidence 457999988887665543 2 5678888883 477777766543
No 175
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=52.91 E-value=7.1 Score=25.51 Aligned_cols=17 Identities=18% Similarity=0.569 Sum_probs=10.3
Q ss_pred CCCCcccCCcCCCCceE
Q 043554 106 TECPICLGEFVDGEKVR 122 (192)
Q Consensus 106 ~~C~ICl~~~~~~~~v~ 122 (192)
..|+.|..++..+....
T Consensus 3 ~~CP~C~~~l~~~~~~~ 19 (81)
T 2jrp_A 3 ITCPVCHHALERNGDTA 19 (81)
T ss_dssp CCCSSSCSCCEECSSEE
T ss_pred CCCCCCCCccccCCCce
Confidence 46777777766544433
No 176
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=51.51 E-value=13 Score=31.40 Aligned_cols=47 Identities=21% Similarity=0.465 Sum_probs=33.2
Q ss_pred CCCCCCCCCcccCCcCCCCceEEcC--CCCCcccHhhHHHHHhC----------CCCCcccCc
Q 043554 101 VDIPATECPICLGEFVDGEKVRVLP--KCNHGFHVRCIDTWLLS----------HSSCPNCRH 151 (192)
Q Consensus 101 ~~~~~~~C~ICl~~~~~~~~v~~l~--~C~H~FH~~Ci~~Wl~~----------~~~CP~CR~ 151 (192)
.+..+..|.+|-+. .++.... .|...||.+||...+.. +=.|=+|.-
T Consensus 89 ~DG~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 89 DDGYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSSSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCCCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 34456789999753 4566665 68999999999998821 235888853
No 177
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=50.79 E-value=2.7 Score=28.79 Aligned_cols=44 Identities=30% Similarity=0.612 Sum_probs=28.9
Q ss_pred CCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhC----CCCCcccCc
Q 043554 107 ECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLS----HSSCPNCRH 151 (192)
Q Consensus 107 ~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~ 151 (192)
.|.+|...-. .+.+.....|...||..|+..=+.. .-.||.|+.
T Consensus 56 ~C~~C~~~~~-~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 56 VCQNCKQSGE-DSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCTTTCCCSC-CTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred cccccCccCC-CCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 5777765533 2345666679999999999753432 225888854
No 178
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=50.27 E-value=6.5 Score=26.71 Aligned_cols=12 Identities=33% Similarity=1.052 Sum_probs=10.7
Q ss_pred cccHhhHHHHHh
Q 043554 130 GFHVRCIDTWLL 141 (192)
Q Consensus 130 ~FH~~Ci~~Wl~ 141 (192)
-||..|+..|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999995
No 179
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=50.26 E-value=28 Score=22.21 Aligned_cols=41 Identities=22% Similarity=0.404 Sum_probs=28.9
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcCC
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLNN 156 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 156 (192)
....|.-|-+.+.. . +.. - -+..||.+| ..|-.|+..|...
T Consensus 24 ~~~~C~~C~~~I~~-~-~~~-a-~~~~~H~~C--------F~C~~C~~~L~~~ 64 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-A-VVK-A-RDKYRHPEC--------FVCADCNLNLKQK 64 (89)
T ss_dssp SCCBCTTTCCBCCS-C-CEE-S-SSCEECTTT--------CCCSSSCCCTTTS
T ss_pred cCCCcccCCCEecc-c-EEE-E-CCceECccC--------CEecCCCCCCCCC
Confidence 34679999988875 2 222 2 678899888 3588888877543
No 180
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=49.61 E-value=6.7 Score=26.58 Aligned_cols=12 Identities=33% Similarity=1.088 Sum_probs=10.7
Q ss_pred cccHhhHHHHHh
Q 043554 130 GFHVRCIDTWLL 141 (192)
Q Consensus 130 ~FH~~Ci~~Wl~ 141 (192)
-||..|+..|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999995
No 181
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=49.39 E-value=2.9 Score=27.39 Aligned_cols=32 Identities=31% Similarity=0.775 Sum_probs=20.0
Q ss_pred CCcccCCcCCC--CceEEcCCCCCcccHhhHHHH
Q 043554 108 CPICLGEFVDG--EKVRVLPKCNHGFHVRCIDTW 139 (192)
Q Consensus 108 C~ICl~~~~~~--~~v~~l~~C~H~FH~~Ci~~W 139 (192)
|+=|-.-+... ...+..+.|++.||..|-..|
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 66554433221 222456569999999998887
No 182
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=48.99 E-value=11 Score=27.45 Aligned_cols=38 Identities=24% Similarity=0.597 Sum_probs=17.8
Q ss_pred CCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCc
Q 043554 107 ECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLL 154 (192)
Q Consensus 107 ~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 154 (192)
.|..|-..+...+.+... -++.||.+|+ .|-.|...|.
T Consensus 67 ~C~~C~~~I~~~~~v~~a--~~~~~H~~CF--------~C~~C~~~L~ 104 (169)
T 2rgt_A 67 KCAACQLGIPPTQVVRRA--QDFVYHLHCF--------ACVVCKRQLA 104 (169)
T ss_dssp BCTTTCCBCCTTSEEEEE--TTEEEEGGGC--------BCTTTCCBCC
T ss_pred cccccccccCCCcEEEEc--CCceEeeCCC--------cCCCCCCCCC
Confidence 455555554443332221 3455555552 4555555543
No 183
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=47.64 E-value=3.7 Score=21.27 Aligned_cols=12 Identities=25% Similarity=0.747 Sum_probs=7.8
Q ss_pred CCCcccCccCcC
Q 043554 144 SSCPNCRHSLLN 155 (192)
Q Consensus 144 ~~CP~CR~~l~~ 155 (192)
..||+|+...+.
T Consensus 4 ~~CpvCk~q~Pd 15 (28)
T 2jvx_A 4 FCCPKCQYQAPD 15 (28)
T ss_dssp EECTTSSCEESS
T ss_pred ccCccccccCcC
Confidence 458888775543
No 184
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.18 E-value=20 Score=22.42 Aligned_cols=40 Identities=25% Similarity=0.458 Sum_probs=27.7
Q ss_pred CCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcCC
Q 043554 105 ATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLNN 156 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 156 (192)
...|+.|-..+.. +.+.. -+..||.+| ..|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~~-~~v~a---~~~~wH~~C--------F~C~~C~~~L~~~ 54 (81)
T 1v6g_A 15 GTRCFSCDQFIEG-EVVSA---LGKTYHPDC--------FVCAVCRLPFPPG 54 (81)
T ss_dssp CCBCTTTCCBCCS-CCEEE---TTEEECTTT--------SSCSSSCCCCCSS
T ss_pred CCcCccccCEecc-ceEEE---CCceeCccC--------CccccCCCCCCCC
Confidence 3479999988873 33332 567899888 3588888777543
No 185
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=47.09 E-value=19 Score=22.24 Aligned_cols=41 Identities=27% Similarity=0.575 Sum_probs=28.9
Q ss_pred CCCCCcccCCcCC---CCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcC
Q 043554 105 ATECPICLGEFVD---GEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLN 155 (192)
Q Consensus 105 ~~~C~ICl~~~~~---~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 155 (192)
...|+-|-..+.. .+.+... -+..||.+| ..|-.|+.+|..
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 58 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAY--EGQSWHDYC--------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEE--TTEEEETTT--------CBCSSSCCBCTT
T ss_pred CccCcccCCcccCCCCCceeEEE--CcceeCccc--------CEehhcCCCCCC
Confidence 4579999998885 3333332 467899888 358899888753
No 186
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=45.82 E-value=26 Score=22.78 Aligned_cols=47 Identities=15% Similarity=0.383 Sum_probs=27.6
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcC
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLN 155 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 155 (192)
+-..|..|...+.... .... =+..||..|..+ .....|..|...|..
T Consensus 32 ~CF~C~~C~~~L~~~~-~~~~--~g~~yC~~cy~~--~~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 32 TCFRCAKCLHPLANET-FVAK--DNKILCNKCTTR--EDSPKCKGCFKAIVA 78 (101)
T ss_dssp TTCCCSSSCCCTTSSC-CEEE--TTEEECHHHHTT--CCCCBCSSSCCBCCS
T ss_pred cCCcccccCCCCCcCe-eECc--CCEEEChhHhhh--hcCCccccCCCcccc
Confidence 3456777777764332 2211 456777777543 234568888887754
No 187
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=45.60 E-value=4.2 Score=35.50 Aligned_cols=47 Identities=21% Similarity=0.426 Sum_probs=32.2
Q ss_pred CCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHh-----CCCCCcccCcc
Q 043554 105 ATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLL-----SHSSCPNCRHS 152 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~ 152 (192)
...| ||...+......+.+..|+-=||..|+.---. .+..||.|+..
T Consensus 37 ~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 37 PVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 3345 99887765556667777888899999843211 23579999754
No 188
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.49 E-value=19 Score=22.59 Aligned_cols=40 Identities=25% Similarity=0.496 Sum_probs=27.4
Q ss_pred CCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCc
Q 043554 105 ATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLL 154 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 154 (192)
...|+.|-..+...+.+... -+..||..| ..|-.|+.+|.
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~ 54 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRELFY--EDRHFHEGC--------FRCCRCQRSLA 54 (82)
T ss_dssp SCBCTTTCCBCCSSCCBCCC--SSCCCBTTT--------SBCTTTCCBCS
T ss_pred CCcCccCCCccccCcEEEEe--CCccccccC--------CeecCCCCccC
Confidence 34799999888743333221 467899888 34888887775
No 189
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.04 E-value=24 Score=21.29 Aligned_cols=40 Identities=20% Similarity=0.575 Sum_probs=25.4
Q ss_pred CCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcCC
Q 043554 105 ATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLNN 156 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 156 (192)
...|..|-+.+.. +.+.. -+..||.+|+ .|-.|+..|...
T Consensus 5 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVIKA---MNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCS-CCEEE---TTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CCcCccCCCEecc-eEEEE---CcccccccCC--------EeCCCCCcCCCC
Confidence 3568888877763 23322 4567887773 577777776543
No 190
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=44.53 E-value=37 Score=18.62 Aligned_cols=9 Identities=44% Similarity=0.623 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 043554 38 IILAALLCA 46 (192)
Q Consensus 38 iil~~ll~~ 46 (192)
++++.++.+
T Consensus 16 iVvG~v~gv 24 (38)
T 2k1k_A 16 VIFGLLLGA 24 (38)
T ss_dssp HHHHHHHHH
T ss_pred eehHHHHHH
Confidence 444433333
No 191
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.35 E-value=26 Score=21.93 Aligned_cols=41 Identities=20% Similarity=0.406 Sum_probs=28.1
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcCC
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLNN 156 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 156 (192)
....|+-|-..+.. ..+ .- -+..||.+| ..|-.|+..|...
T Consensus 14 ~~~~C~~C~~~I~~-~~v--~a-~~~~~H~~C--------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 14 GKYICQKCHAIIDE-QPL--IF-KNDPYHPDH--------FNCANCGKELTAD 54 (79)
T ss_dssp CCCBCTTTCCBCCS-CCC--CC-SSSCCCTTT--------SBCSSSCCBCCTT
T ss_pred CCCCCccCCCEecc-eEE--EE-CcceeCCCC--------CEeCCCCCccCCC
Confidence 34679999988873 222 22 577899888 3588888877643
No 192
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=42.59 E-value=6.1 Score=24.23 Aligned_cols=44 Identities=27% Similarity=0.571 Sum_probs=26.4
Q ss_pred CCCCCcccCCcCCCCceEEcCC--CC-CcccHhhHHHHH--hCCCCCcccCc
Q 043554 105 ATECPICLGEFVDGEKVRVLPK--CN-HGFHVRCIDTWL--LSHSSCPNCRH 151 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~--C~-H~FH~~Ci~~Wl--~~~~~CP~CR~ 151 (192)
...| ||.... .+ .++.... |. .-||..|+.--- ..+-.||.|+.
T Consensus 11 ~~yC-~C~~~~-~g-~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVS-YG-EMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCC-CC-CeeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 3456 898753 23 4555555 44 689999987210 12346999954
No 193
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=42.06 E-value=15 Score=25.41 Aligned_cols=39 Identities=26% Similarity=0.537 Sum_probs=29.4
Q ss_pred CCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCc
Q 043554 105 ATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLL 154 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 154 (192)
...|+-|-..+.....+.. -+..||..| ..|-.|+..|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYA---MDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEE---TTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEe---CCcEEcccc--------cCcCcCCCccc
Confidence 4589999998876543433 577899988 45899988885
No 194
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.77 E-value=34 Score=20.51 Aligned_cols=38 Identities=26% Similarity=0.592 Sum_probs=25.4
Q ss_pred CCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCc
Q 043554 105 ATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLL 154 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 154 (192)
...|+.|-..+... .+ .. -+..||.+| ..|-.|+.+|.
T Consensus 5 ~~~C~~C~~~I~~~-~~--~a-~~~~~H~~C--------F~C~~C~~~L~ 42 (70)
T 2d8z_A 5 SSGCVQCKKPITTG-GV--TY-REQPWHKEC--------FVCTACRKQLS 42 (70)
T ss_dssp CCBCSSSCCBCCSS-EE--ES-SSSEEETTT--------SBCSSSCCBCT
T ss_pred CCCCcccCCeeccc-eE--EE-CccccCCCC--------CccCCCCCcCC
Confidence 35688888887643 22 22 567888887 34778877774
No 195
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=41.24 E-value=33 Score=22.07 Aligned_cols=32 Identities=13% Similarity=0.081 Sum_probs=12.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043554 32 FDTNMVIILAALLCALICALGLNSIVRCALRC 63 (192)
Q Consensus 32 ~~~~~~iil~~ll~~~i~~~~l~~~~~~~~~~ 63 (192)
....+.-+++.++.+-+++++++.++.....+
T Consensus 10 ~~~Iv~gvi~gilliGllllliwk~~~~i~Dr 41 (79)
T 2knc_B 10 ILVVLLSVMGAILLIGLAALLIWKLLITIHDR 41 (79)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444333333334444333433333
No 196
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=40.72 E-value=2.9 Score=26.12 Aligned_cols=44 Identities=23% Similarity=0.436 Sum_probs=26.2
Q ss_pred CCCCcccCCcCCCCceEEcC--CCCCcccHhhHHHHH---h-----CCCCCcccCc
Q 043554 106 TECPICLGEFVDGEKVRVLP--KCNHGFHVRCIDTWL---L-----SHSSCPNCRH 151 (192)
Q Consensus 106 ~~C~ICl~~~~~~~~v~~l~--~C~H~FH~~Ci~~Wl---~-----~~~~CP~CR~ 151 (192)
..| ||-.....+. ++... .|..=||..|+.--- . .+..||.||.
T Consensus 11 v~C-~C~~~~~~g~-mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDS-MIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSC-EEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCC-EEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 346 7976655443 44443 377779999973210 0 1356999974
No 197
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=40.66 E-value=2.2 Score=27.64 Aligned_cols=14 Identities=21% Similarity=0.764 Sum_probs=12.7
Q ss_pred CCCCcccHhhHHHH
Q 043554 126 KCNHGFHVRCIDTW 139 (192)
Q Consensus 126 ~C~H~FH~~Ci~~W 139 (192)
.|+|.||..|...|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 59999999999887
No 198
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.48 E-value=36 Score=20.34 Aligned_cols=38 Identities=18% Similarity=0.558 Sum_probs=24.8
Q ss_pred CCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCc
Q 043554 105 ATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLL 154 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 154 (192)
...|+-|-+.+.. +.+.. -+..||.+|+ .|-.|+.+|.
T Consensus 5 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~CF--------~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITS-GGITY---QDQPWHADCF--------VCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCT-TCEEE---TTEEECTTTT--------BCTTTCCBCT
T ss_pred cCCCcccCCEeCc-ceEEE---CccccccCcC--------EECCCCCCCC
Confidence 3568888887764 33332 4667887773 4777877764
No 199
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.45 E-value=20 Score=22.37 Aligned_cols=39 Identities=23% Similarity=0.383 Sum_probs=27.5
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCc
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLL 154 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 154 (192)
....|+-|-+.+... .+ . - -+..||.+|+ .|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~-~~-~-a-~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV-FV-K-L-RDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCSS-CE-E-C-SSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCccccCCCCccCc-EE-E-E-CcceeCcCcC--------eeCCCCCCCC
Confidence 346899999888753 22 2 2 5788998883 5888877764
No 200
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.85 E-value=27 Score=22.34 Aligned_cols=40 Identities=15% Similarity=0.403 Sum_probs=28.1
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcC
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLN 155 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 155 (192)
....|+.|-..+. ++.+. . -+..||.+| ..|-.|+..|..
T Consensus 24 ~~~~C~~C~~~I~-~~~v~--a-~~~~~H~~C--------F~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFLV--A-LGKSWHPEE--------FNCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCC-SCEEE--E-TTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCCccCCCEec-ceEEE--E-CCccccccC--------CccCCCCCCCCC
Confidence 3567999998885 33332 2 578899888 358888887754
No 201
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=39.49 E-value=16 Score=26.95 Aligned_cols=47 Identities=9% Similarity=0.155 Sum_probs=26.6
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcCC
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLNN 156 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 156 (192)
+-..|..|...+.... . . . =|..||..|..+ .....|..|...|...
T Consensus 86 ~CF~C~~C~~~L~~~~-f-~-~-~g~~yC~~~y~~--~f~~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERC-F-S-R-GESVYCKDDFFK--RFGTKCAACQLGIPPT 132 (182)
T ss_dssp STTSCTTTCCCCSSCC-E-E-E-TTEEECHHHHHH--TTSCCCTTTCCCCCSS
T ss_pred ccCccCCCCCccCCCc-e-e-E-CCEeeecCcccc--ccccccccCCCccCCC
Confidence 4556777777665542 2 1 1 456677666554 2234577776666543
No 202
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=39.32 E-value=17 Score=21.66 Aligned_cols=39 Identities=26% Similarity=0.547 Sum_probs=26.4
Q ss_pred CCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcC
Q 043554 105 ATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLN 155 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 155 (192)
...|+.|-..+. ++ . +.. -+..||.+| ..|-.|+.+|..
T Consensus 5 ~~~C~~C~~~I~-~~-~-~~a-~~~~~H~~C--------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-GR-V-VNA-MGKQWHVEH--------FVCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-SC-E-ECC-TTSBEETTT--------CBCTTTCCBCSS
T ss_pred CCCCcccCCEec-ce-E-EEE-CccccccCc--------CEECCCCCCCCC
Confidence 356888988877 33 2 232 567889888 358888877753
No 203
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.22 E-value=41 Score=20.58 Aligned_cols=37 Identities=16% Similarity=0.474 Sum_probs=22.3
Q ss_pred CCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCc
Q 043554 106 TECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLL 154 (192)
Q Consensus 106 ~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 154 (192)
..|+-|-..+.. ..+ .. -+..||.+| ..|-.|..+|.
T Consensus 6 ~~C~~C~~~I~~-~~v--~a-~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG-RVL--EA-GEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS-CCB--CC-SSCCBCTTT--------SCCSSSCCCCC
T ss_pred CCcccCCCEecC-eeE--Ee-CCCCCCCCc--------CEeCCCCCCCC
Confidence 467788777654 222 22 566788777 34666666664
No 204
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=37.30 E-value=22 Score=26.34 Aligned_cols=27 Identities=22% Similarity=0.491 Sum_probs=18.9
Q ss_pred CCCcccCCcCCCCceEEcCCCCCcccHhh
Q 043554 107 ECPICLGEFVDGEKVRVLPKCNHGFHVRC 135 (192)
Q Consensus 107 ~C~ICl~~~~~~~~v~~l~~C~H~FH~~C 135 (192)
.|..|-..+...+.+... -++.||..|
T Consensus 71 ~C~~C~~~I~~~e~~i~a--~~~~~H~~C 97 (188)
T 1rut_X 71 ACSACGQSIPASELVMRA--QGNVYHLKC 97 (188)
T ss_dssp ECTTTCCEECTTSEEEEE--TTEEECGGG
T ss_pred ccccCCCccccCcEEEEc--CCCEEeCCC
Confidence 588898887765544332 577888888
No 205
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=37.09 E-value=52 Score=17.89 Aligned_cols=19 Identities=42% Similarity=0.494 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043554 39 ILAALLCALICALGLNSIV 57 (192)
Q Consensus 39 il~~ll~~~i~~~~l~~~~ 57 (192)
.++.+++++++.++++.+.
T Consensus 7 ~ivalivalIiaIVVWtiv 25 (36)
T 1pi7_A 7 AIVALVVAIIIAIVVWSIV 25 (36)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444555555554444
No 206
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=35.50 E-value=34 Score=23.35 Aligned_cols=50 Identities=12% Similarity=0.076 Sum_probs=34.5
Q ss_pred CCCCCcccCCcCC-CCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcCC
Q 043554 105 ATECPICLGEFVD-GEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLNN 156 (192)
Q Consensus 105 ~~~C~ICl~~~~~-~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 156 (192)
-..|..|-..+.+ +..... .=+..||..|...-+..+..|-.|...|...
T Consensus 32 CF~C~~C~~~L~~~~~~~~~--~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~ 82 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYT--KSGMILCRNDYIRLFGNSGAGGSGGHMGSGG 82 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEE--ETTEEECHHHHHHHHCCCCSSSCSSCCSCCE
T ss_pred CCCcCCCCCcccccCCeEEE--ECCeeecHHHHHHHcCCCCccccCCCCcCch
Confidence 3578888877763 222222 2567899999988666555899999988753
No 207
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=34.98 E-value=25 Score=20.95 Aligned_cols=38 Identities=21% Similarity=0.482 Sum_probs=26.4
Q ss_pred CCCcccCCcCCCCceEEcCCCCCccc--HhhHHHHHhCCCCCcccCccCc
Q 043554 107 ECPICLGEFVDGEKVRVLPKCNHGFH--VRCIDTWLLSHSSCPNCRHSLL 154 (192)
Q Consensus 107 ~C~ICl~~~~~~~~v~~l~~C~H~FH--~~Ci~~Wl~~~~~CP~CR~~l~ 154 (192)
.|+-|-..+..++..... -+..|| .+| ..|-.|+.+|.
T Consensus 4 ~C~~C~~~I~~~~~~v~a--~~~~wH~~~~C--------F~C~~C~~~L~ 43 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTY--NNFSWHASTEC--------FLCSCCSKCLI 43 (65)
T ss_dssp ECTTTSSEECTTSCEEEE--TTEEEETTTTT--------SBCTTTCCBCT
T ss_pred CCcCCCCeeccCceEEEE--CCCccCCCCCC--------EECCCCCCcCC
Confidence 588888888764333332 567899 888 35888887774
No 208
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=33.54 E-value=78 Score=21.30 Aligned_cols=28 Identities=32% Similarity=0.686 Sum_probs=18.4
Q ss_pred CCCCcccHhhH---H---HHHhC-----CCCCcccCccC
Q 043554 126 KCNHGFHVRCI---D---TWLLS-----HSSCPNCRHSL 153 (192)
Q Consensus 126 ~C~H~FH~~Ci---~---~Wl~~-----~~~CP~CR~~l 153 (192)
.|+.=||..|+ + +-+.+ ...||.|...-
T Consensus 7 ~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~ 45 (140)
T 2ku7_A 7 KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 45 (140)
T ss_dssp CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTS
T ss_pred cCCCccCCcccccCHHHHHHHhhccccceeeCccccccc
Confidence 48999999995 2 22222 35799996543
No 209
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=33.13 E-value=31 Score=23.62 Aligned_cols=50 Identities=12% Similarity=0.267 Sum_probs=28.6
Q ss_pred CCCCCCcccCCcCC-CCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcC
Q 043554 104 PATECPICLGEFVD-GEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLN 155 (192)
Q Consensus 104 ~~~~C~ICl~~~~~-~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 155 (192)
+-..|..|-..+.. +...... =|..||..|..+-+..+..|..|...|..
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~--~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYK--LGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEE--TTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred HHcccCcCCCccccCCCeEEEE--CCEEeecCchhhhCCCccChhhcCCccCc
Confidence 34567777777653 2222221 45677777776644333367777776643
No 210
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.28 E-value=44 Score=20.59 Aligned_cols=40 Identities=18% Similarity=0.473 Sum_probs=27.5
Q ss_pred CCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcCC
Q 043554 105 ATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLNN 156 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~~ 156 (192)
...|+.|-..+.. +.+.. -+..||.+| ..|-.|+.+|...
T Consensus 15 ~~~C~~C~~~I~~-~~v~a---~~~~~H~~C--------F~C~~C~~~L~~~ 54 (80)
T 1x3h_A 15 SPKCGGCNRPVLE-NYLSA---MDTVWHPEC--------FVCGDCFTSFSTG 54 (80)
T ss_dssp SCBCTTTCCBCCS-SCEEE---TTEEECTTT--------CBCSSSCCBSCSS
T ss_pred CCccccCCCeecc-eeEEE---CCCeEecCc--------CChhhCCCCCCCC
Confidence 3579999888875 33332 467888888 3588888877543
No 211
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.24 E-value=22 Score=22.81 Aligned_cols=34 Identities=21% Similarity=0.360 Sum_probs=23.0
Q ss_pred CCCCCCCCcccCCcCCC-CceEEcCCCCCcccHhh
Q 043554 102 DIPATECPICLGEFVDG-EKVRVLPKCNHGFHVRC 135 (192)
Q Consensus 102 ~~~~~~C~ICl~~~~~~-~~v~~l~~C~H~FH~~C 135 (192)
.+.+..|+.|.+.|--- +.-...+.|.|..|.+|
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~C 56 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDC 56 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTS
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhcccc
Confidence 45678999999988621 11123345888888887
No 212
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.19 E-value=40 Score=20.79 Aligned_cols=38 Identities=26% Similarity=0.673 Sum_probs=26.2
Q ss_pred CCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCc
Q 043554 105 ATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLL 154 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 154 (192)
...|+.|-+.+... .+ .. -+..||.+|+ .|-.|+.+|.
T Consensus 15 ~~~C~~C~~~I~~~-~v--~a-~~~~~H~~CF--------~C~~C~~~L~ 52 (80)
T 2cuq_A 15 APRCARCSKTLTQG-GV--TY-RDQPWHRECL--------VCTGCQTPLA 52 (80)
T ss_dssp SCCCTTTCCCCCSC-CE--ES-SSSEECTTTC--------BCSSSCCBCT
T ss_pred CCcCCCCCCEecCc-EE--EE-CCchhhhhhC--------CcccCCCcCC
Confidence 35799998887653 22 22 5778998883 5888887774
No 213
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.31 E-value=18 Score=22.68 Aligned_cols=46 Identities=22% Similarity=0.418 Sum_probs=26.6
Q ss_pred CCCCCcccCCcCCCCceEEcCCCC---CcccHhhHHHHH--hCCCCCcccCccC
Q 043554 105 ATECPICLGEFVDGEKVRVLPKCN---HGFHVRCIDTWL--LSHSSCPNCRHSL 153 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~C~---H~FH~~Ci~~Wl--~~~~~CP~CR~~l 153 (192)
...| ||.... .+ .++....|+ .-||..|+.--- ..+-.||.|+...
T Consensus 6 ~~yC-~C~~~~-~g-~MI~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 6 SGYC-ICNQVS-YG-EMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CCCS-TTSCCC-CS-SEECCSCTTCSCCCEEHHHHTCSSCCSSCCCCHHHHHHH
T ss_pred CeEE-EcCCCC-CC-CEeEeCCCCCCccCCcccccccCcCCCCCEECCCCCccc
Confidence 3445 587652 33 344444443 569999986311 1234699997655
No 214
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.44 E-value=52 Score=20.33 Aligned_cols=39 Identities=23% Similarity=0.612 Sum_probs=27.1
Q ss_pred CCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcC
Q 043554 105 ATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLN 155 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 155 (192)
...|+-|-..+.. ..+.. -+..||.+| ..|-.|...|..
T Consensus 15 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~C--------F~C~~C~~~L~~ 53 (81)
T 2dlo_A 15 LEKCATCSQPILD-RILRA---MGKAYHPGC--------FTCVVCHRGLDG 53 (81)
T ss_dssp CCBCTTTCCBCCS-CCEEE---TTEEECTTT--------CBCSSSCCBCTT
T ss_pred CCccccCCCeecc-eeEEE---CCccccHHh--------cCcccCCCccCC
Confidence 4579999888874 23322 567899888 358888887753
No 215
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=27.62 E-value=40 Score=18.35 Aligned_cols=10 Identities=10% Similarity=0.129 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 043554 38 IILAALLCAL 47 (192)
Q Consensus 38 iil~~ll~~~ 47 (192)
++.+++.++.
T Consensus 15 I~~~vv~Gv~ 24 (41)
T 2k9y_A 15 VIGGVAVGVV 24 (41)
T ss_dssp HHHHHHHHHH
T ss_pred EEeehhHHHH
Confidence 3443333333
No 216
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=27.21 E-value=46 Score=22.32 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=22.8
Q ss_pred CCCCCCcccCCcCC-CCceEEcCCCCCcccHhhHHHHHhC
Q 043554 104 PATECPICLGEFVD-GEKVRVLPKCNHGFHVRCIDTWLLS 142 (192)
Q Consensus 104 ~~~~C~ICl~~~~~-~~~v~~l~~C~H~FH~~Ci~~Wl~~ 142 (192)
+-..|..|-..+.. +.... . .=+..||..|..+-+..
T Consensus 29 ~CF~C~~C~~~L~~~g~~~~-~-~~g~~yC~~~y~~~f~~ 66 (114)
T 1j2o_A 29 DCLSCDLCGCRLGEVGRRLY-Y-KLGRKLCRRDYLRLGGS 66 (114)
T ss_dssp TTCCCSSSCSCCCCSSSCCC-C-BTTBCCCHHHHHHHHTS
T ss_pred hcCcccccCCchhcCCCeeE-E-ECCeeechHHHHHHhCc
Confidence 45678888877764 22221 1 24678888888775543
No 217
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=27.16 E-value=80 Score=17.00 Aligned_cols=15 Identities=13% Similarity=0.186 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 043554 40 LAALLCALICALGLN 54 (192)
Q Consensus 40 l~~ll~~~i~~~~l~ 54 (192)
|..++++.++++.+.
T Consensus 10 lt~i~gl~vif~~lg 24 (40)
T 2l9u_A 10 LTVIAGLVVIFMMLG 24 (40)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC
Confidence 333344444444443
No 218
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=27.01 E-value=24 Score=21.14 Aligned_cols=14 Identities=21% Similarity=0.657 Sum_probs=10.0
Q ss_pred CCCCCcccCCcCCC
Q 043554 105 ATECPICLGEFVDG 118 (192)
Q Consensus 105 ~~~C~ICl~~~~~~ 118 (192)
-..|++|...+...
T Consensus 10 iL~CP~c~~~L~~~ 23 (56)
T 2kpi_A 10 ILACPACHAPLEER 23 (56)
T ss_dssp SCCCSSSCSCEEEE
T ss_pred heeCCCCCCcceec
Confidence 45799998876543
No 219
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=25.95 E-value=53 Score=22.21 Aligned_cols=46 Identities=11% Similarity=0.148 Sum_probs=21.8
Q ss_pred CCCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCcC
Q 043554 105 ATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLLN 155 (192)
Q Consensus 105 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~~ 155 (192)
-..|..|...+... .... . =|..||..|...- ....|..|..+|..
T Consensus 30 CF~C~~C~~~L~~~-~f~~-~-~g~~yC~~cy~~~--~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 30 HFCCFDCDSILAGE-IYVM-V-NDKPVCKPCYVKN--HAVVCQGCHNAIDP 75 (126)
T ss_dssp GSBCTTTCCBCTTS-EEEE-E-TTEEEEHHHHHHH--SCCBCTTTCSBCCT
T ss_pred CCCcCCCCCCCCcC-EEEe-E-CCEEechHHhCcC--cCccCcccCCcCCc
Confidence 34566665555432 1111 1 3455666665442 23446666665553
No 220
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=25.03 E-value=16 Score=22.95 Aligned_cols=18 Identities=39% Similarity=0.606 Sum_probs=12.2
Q ss_pred HHHhCCCCCcccCccCcC
Q 043554 138 TWLLSHSSCPNCRHSLLN 155 (192)
Q Consensus 138 ~Wl~~~~~CP~CR~~l~~ 155 (192)
.|+..--.||+|+.++.-
T Consensus 3 ~~LLeiL~CP~ck~~L~~ 20 (69)
T 2pk7_A 3 TKLLDILACPICKGPLKL 20 (69)
T ss_dssp CCGGGTCCCTTTCCCCEE
T ss_pred hHHHhheeCCCCCCcCeE
Confidence 345555678999887753
No 221
>2kig_A Inositol polyphosphate 5-phosphatase II isoform; OCRL, INPP5B, clathrin, endocytosis, hydrolase; NMR {Mus musculus}
Probab=24.79 E-value=26 Score=25.26 Aligned_cols=12 Identities=50% Similarity=0.504 Sum_probs=10.3
Q ss_pred ccccccccCCCC
Q 043554 2 HRRLLETELSVS 13 (192)
Q Consensus 2 ~~~~~~~~~~~~ 13 (192)
||||-.||.+++
T Consensus 62 HrRMAITGdDvs 73 (161)
T 2kig_A 62 HRRMAITGDDVS 73 (161)
T ss_dssp CCSSGGGSTTCC
T ss_pred eeeeeeecCccc
Confidence 899999988876
No 222
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=24.77 E-value=15 Score=31.59 Aligned_cols=47 Identities=19% Similarity=0.300 Sum_probs=32.0
Q ss_pred CCCcccCCcCCCCceEEcCCCCCcccHhhHHHH---Hh--CCCCCcccCccC
Q 043554 107 ECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTW---LL--SHSSCPNCRHSL 153 (192)
Q Consensus 107 ~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~W---l~--~~~~CP~CR~~l 153 (192)
...||...+..+...+....|.-=||..|+.-- .. .+..||.|+...
T Consensus 6 ~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~ 57 (447)
T 3kv4_A 6 VYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLH 57 (447)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHH
T ss_pred eEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCcccc
Confidence 345888877655566677778888999998321 11 345799997643
No 223
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=23.87 E-value=47 Score=24.50 Aligned_cols=38 Identities=32% Similarity=0.622 Sum_probs=21.0
Q ss_pred CCCCcccCCcCCCCceEEcCCCCCcccHhhHHHHHhCCCCCcccCccCc
Q 043554 106 TECPICLGEFVDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRHSLL 154 (192)
Q Consensus 106 ~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~l~ 154 (192)
..|+.|-..+...+.+.. -+..||.+| ..|-.|+..|.
T Consensus 116 ~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~ 153 (192)
T 1b8t_A 116 DGCPRCGQAVYAAEKVIG---AGKSWHKSC--------FRCAKCGKSLE 153 (192)
T ss_dssp EECTTTSCEECSSSCEEE---TTEEECTTT--------CBCTTTCCBCC
T ss_pred CcCCCCCCEecCcEEEec---CCCccchhc--------CCccccCCCCC
Confidence 347777776665544432 345666665 23555555553
No 224
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=21.89 E-value=48 Score=24.36 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=14.1
Q ss_pred EEcCCCCCcccHhhHHHHHhCCCCCcccCc
Q 043554 122 RVLPKCNHGFHVRCIDTWLLSHSSCPNCRH 151 (192)
Q Consensus 122 ~~l~~C~H~FH~~Ci~~Wl~~~~~CP~CR~ 151 (192)
-+++.|||++-. .-...||+|..
T Consensus 139 ~~C~~CG~i~~~-------~~p~~CP~Cg~ 161 (170)
T 3pwf_A 139 YICPICGYTAVD-------EAPEYCPVCGA 161 (170)
T ss_dssp EECTTTCCEEES-------CCCSBCTTTCC
T ss_pred eEeCCCCCeeCC-------CCCCCCCCCCC
Confidence 344458888751 22337999965
No 225
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=20.65 E-value=16 Score=22.82 Aligned_cols=18 Identities=28% Similarity=0.397 Sum_probs=11.5
Q ss_pred HHHhCCCCCcccCccCcC
Q 043554 138 TWLLSHSSCPNCRHSLLN 155 (192)
Q Consensus 138 ~Wl~~~~~CP~CR~~l~~ 155 (192)
.|+..--.||+|+.++.-
T Consensus 5 ~~LLeiL~CP~ck~~L~~ 22 (67)
T 2jny_A 5 PQLLEVLACPKDKGPLRY 22 (67)
T ss_dssp GGGTCCCBCTTTCCBCEE
T ss_pred HHHHHHhCCCCCCCcCeE
Confidence 345555568888877643
No 226
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=20.56 E-value=55 Score=21.54 Aligned_cols=45 Identities=18% Similarity=0.377 Sum_probs=26.6
Q ss_pred CCCCCCcccCCcCCCCceEEcCCCC---CcccHhhHHHHH--hCCCCCcc-cCc
Q 043554 104 PATECPICLGEFVDGEKVRVLPKCN---HGFHVRCIDTWL--LSHSSCPN-CRH 151 (192)
Q Consensus 104 ~~~~C~ICl~~~~~~~~v~~l~~C~---H~FH~~Ci~~Wl--~~~~~CP~-CR~ 151 (192)
+...| ||..... + .++....|+ .-||..|+.--- ..+-.||. |+.
T Consensus 25 ~~~yC-iC~~~~~-g-~MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 25 EEVYC-FCRNVSY-G-PMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CSCCS-TTTCCCS-S-SEECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCcEE-EeCCCCC-C-CEEEecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 34557 9987532 3 344455554 579999985210 12346999 864
No 227
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=20.13 E-value=41 Score=23.95 Aligned_cols=13 Identities=31% Similarity=0.789 Sum_probs=10.0
Q ss_pred CCCCcccCCcCCC
Q 043554 106 TECPICLGEFVDG 118 (192)
Q Consensus 106 ~~C~ICl~~~~~~ 118 (192)
..|+-|-.+|.-.
T Consensus 28 P~CP~C~seytYe 40 (138)
T 2akl_A 28 PPCPQCNSEYTYE 40 (138)
T ss_dssp CCCTTTCCCCCEE
T ss_pred CCCCCCCCcceEe
Confidence 5799998887644
Done!