BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043555
         (363 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P56884|GLND_RHIME [Protein-PII] uridylyltransferase OS=Rhizobium meliloti (strain
           1021) GN=glnD PE=3 SV=1
          Length = 949

 Score = 33.1 bits (74), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 69/140 (49%), Gaps = 13/140 (9%)

Query: 158 FSALTVPINNQYLLLKHNKNLLKKFCSISDDSRSESQSSLKLDISRF---VLHVEGENEL 214
            SA+   + + +L+ K   +L + FCS  +D +++    +   ISRF   V  + G  + 
Sbjct: 323 LSAVERFMKHYFLVAKDVGDLTRIFCSALEDQQAKDTPGITGVISRFRNRVRKIAGTLDF 382

Query: 215 VDIIMKSNQDATDKWMQMGQKKQPEHLLQLLKQSNSQGFKGVLASNSIYKVSQTILLIHQ 274
           VD   +     TD +     K+ P +L++L   ++  G +      ++ +V++++ LI  
Sbjct: 383 VDDGGRIALAGTDVF-----KRDPVNLMRLFHIADINGLE--FHPAALKQVTRSLGLITP 435

Query: 275 S-RNNQTTERLFAVIAVMTS 293
             R N+   RLF  ++++TS
Sbjct: 436 HLRENEEANRLF--LSILTS 453


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.134    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,351,981
Number of Sequences: 539616
Number of extensions: 4362840
Number of successful extensions: 11425
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 11425
Number of HSP's gapped (non-prelim): 21
length of query: 363
length of database: 191,569,459
effective HSP length: 119
effective length of query: 244
effective length of database: 127,355,155
effective search space: 31074657820
effective search space used: 31074657820
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)