Query 043555
Match_columns 363
No_of_seqs 16 out of 18
Neff 2.1
Searched_HMMs 13730
Date Mon Mar 25 10:18:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043555.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043555hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2pc6a2 d.58.18.6 (A:1-77) Ace 51.1 4 0.00029 29.8 2.4 30 192-221 34-63 (77)
2 d2cqea1 g.66.1.1 (A:458-513) Z 45.6 1.6 0.00012 31.3 -0.5 10 45-54 1-10 (56)
3 d2f1fa1 d.58.18.6 (A:2-77) Ace 44.0 6.8 0.0005 28.4 2.7 30 192-221 33-62 (76)
4 d2fgca2 d.58.18.6 (A:27-104) A 43.9 5.2 0.00038 29.2 2.0 30 192-221 35-64 (78)
5 d1g99a2 c.55.1.2 (A:198-398) A 33.0 48 0.0035 27.7 6.8 89 232-328 58-147 (201)
6 d2pila_ d.24.1.1 (A:) Pilin Gc 32.8 5.9 0.00043 27.8 0.8 23 149-171 6-29 (158)
7 d2e1za2 c.55.1.2 (A:193-397) P 27.5 1E+02 0.0075 25.5 7.9 87 234-328 60-147 (205)
8 d1f39a_ b.87.1.1 (A:) lambda r 22.1 17 0.0013 26.0 1.6 14 85-98 2-15 (101)
9 d1x9na3 d.142.2.1 (A:534-753) 20.7 14 0.001 29.0 0.9 32 236-267 169-204 (220)
10 d1px5a1 a.160.1.2 (A:201-346) 16.2 38 0.0027 27.4 2.6 32 226-257 11-59 (146)
No 1
>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}
Probab=51.11 E-value=4 Score=29.80 Aligned_cols=30 Identities=27% Similarity=0.403 Sum_probs=25.8
Q ss_pred ccccccccccceeEEEecChhhHHHHHHhh
Q 043555 192 ESQSSLKLDISRFVLHVEGENELVDIIMKS 221 (363)
Q Consensus 192 s~~~~~K~DL~rFVLHLEGEeELVd~Mmk~ 221 (363)
+..++..+++||+.+-.+|+|+.+|-++|+
T Consensus 34 tv~~te~~~iSRmtivv~~~~~~i~qi~kQ 63 (77)
T d2pc6a2 34 SVAPTEDPTLSRMTLVTNGPDEIVEQITKQ 63 (77)
T ss_dssp EEEECSSTTEEEEEEEEEECHHHHHHHHHH
T ss_pred EEeccCCCCeEEEEEEEECCHHHHHHHHHH
Confidence 446667899999999999999999988774
No 2
>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.64 E-value=1.6 Score=31.25 Aligned_cols=10 Identities=20% Similarity=0.481 Sum_probs=6.8
Q ss_pred cccceeeecC
Q 043555 45 VPIKYFSLNA 54 (363)
Q Consensus 45 fP~K~fslNA 54 (363)
||||||-..+
T Consensus 1 FPCK~yHtg~ 10 (56)
T d2cqea1 1 FPCKLYHTTG 10 (56)
T ss_dssp SBCSHHHHTS
T ss_pred CCcceeecCC
Confidence 7788776554
No 3
>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}
Probab=44.01 E-value=6.8 Score=28.41 Aligned_cols=30 Identities=17% Similarity=0.328 Sum_probs=25.5
Q ss_pred ccccccccccceeEEEecChhhHHHHHHhh
Q 043555 192 ESQSSLKLDISRFVLHVEGENELVDIIMKS 221 (363)
Q Consensus 192 s~~~~~K~DL~rFVLHLEGEeELVd~Mmk~ 221 (363)
+..|+..+++||+.+-.+|+|+.+|-++|+
T Consensus 33 ~v~~te~~~iSR~tivv~~~~~~i~qi~kQ 62 (76)
T d2f1fa1 33 TVAPTDDPTLSRMTIQTVGDEKVLEQIEKQ 62 (76)
T ss_dssp EEEECSCSSEEEEEEEEESCHHHHHHHHHH
T ss_pred EEcccCCCCeeEEEEEEECCHHHHHHHHHH
Confidence 346667899999999999999999988764
No 4
>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}
Probab=43.92 E-value=5.2 Score=29.23 Aligned_cols=30 Identities=27% Similarity=0.416 Sum_probs=25.9
Q ss_pred ccccccccccceeEEEecChhhHHHHHHhh
Q 043555 192 ESQSSLKLDISRFVLHVEGENELVDIIMKS 221 (363)
Q Consensus 192 s~~~~~K~DL~rFVLHLEGEeELVd~Mmk~ 221 (363)
+..|+..+++||+.+-.+|+|+.++-++|+
T Consensus 35 ~v~~te~~~iSR~tivv~g~~~~i~qi~kQ 64 (78)
T d2fgca2 35 TVGESETPGLSRLVIMVKGDDKTIEQIEKQ 64 (78)
T ss_dssp EEEECSSTTEEEEEEEEEECTTHHHHHHHH
T ss_pred EEeecCCCCeEEEEEEEEcCHHHHHHHHHH
Confidence 346777899999999999999999988774
No 5
>d1g99a2 c.55.1.2 (A:198-398) Acetate kinase {Archaeon Methanosarcina thermophila [TaxId: 2210]}
Probab=33.04 E-value=48 Score=27.67 Aligned_cols=89 Identities=15% Similarity=0.222 Sum_probs=63.2
Q ss_pred hccccChhHHHHHHHHhhhcccchhhc-cchhHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHhhcCcccceeec
Q 043555 232 MGQKKQPEHLLQLLKQSNSQGFKGVLA-SNSIYKVSQTILLIHQSRNNQTTERLFAVIAVMTSDIICACLTNLPHVMCLN 310 (363)
Q Consensus 232 ~G~KKQPk~lieLLEks~~qGFkGVlA-aNSMYRIsqTiLln~e~~n~~~~erLfe~l~vmiSDIl~aCltNlp~VIs~k 310 (363)
+-.+..|..+.++|.|- -|++|++- +|-|..|-+-. ...|.....-++...--|+.-+|+..+-|..| .-=
T Consensus 58 ~~~g~s~~ei~~~Ln~~--sGL~g~sG~s~D~R~v~~~~-----~~Gd~~A~la~d~~~yri~k~Iga~~a~Lggv-Dai 129 (201)
T d1g99a2 58 EKEGLTTREIDTLMNKK--SGVLGVSGLSNDFRDLDEAA-----SKGNRKAELALEIFAYKVKKFIGEYSAVLNGA-DAV 129 (201)
T ss_dssp HHHTCCHHHHHHHHHHS--CHHHHHHSSCSCHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHHHHHHHHTTSC-SEE
T ss_pred HHcCCCHHHHHHHHhhc--cCcEeecCCCCcHHHHHHHH-----HCCCHHHHHHHHHHHHHHHHHHHHHHhccCCC-CEE
Confidence 33456777888888872 38888886 89998776543 22334456677888888899999998888663 344
Q ss_pred ccchhhhhhhhhhhhhHh
Q 043555 311 CLSSTLDQREDCMRNTVY 328 (363)
Q Consensus 311 CL~save~RE~sVR~Av~ 328 (363)
-++-.|-|....||+.|.
T Consensus 130 VfTGGigen~~~vR~~i~ 147 (201)
T d1g99a2 130 VFTAGIGENSASIRKRIL 147 (201)
T ss_dssp EEEHHHHHHCHHHHHHHH
T ss_pred EEecccccccHHHHHHHH
Confidence 567778888888887653
No 6
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=32.82 E-value=5.9 Score=27.77 Aligned_cols=23 Identities=22% Similarity=0.615 Sum_probs=18.2
Q ss_pred HHHHHHHH-Hhhccccccccchhh
Q 043555 149 IMLVLLVI-YFSALTVPINNQYLL 171 (363)
Q Consensus 149 lMlvll~i-~fSaltvp~~k~y~e 171 (363)
||+|+.+| ..+|+.+|...+|.+
T Consensus 6 LlVViaIIgILaaia~P~~~~~~~ 29 (158)
T d2pila_ 6 LMIVIAIVGILAAVALPAYQDYTA 29 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777 899999998777765
No 7
>d2e1za2 c.55.1.2 (A:193-397) Propionate kinase {Salmonella typhimurium [TaxId: 90371]}
Probab=27.47 E-value=1e+02 Score=25.53 Aligned_cols=87 Identities=9% Similarity=0.130 Sum_probs=62.7
Q ss_pred cccChhHHHHHHHHhhhcccchhhc-cchhHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHhhcCcccceeeccc
Q 043555 234 QKKQPEHLLQLLKQSNSQGFKGVLA-SNSIYKVSQTILLIHQSRNNQTTERLFAVIAVMTSDIICACLTNLPHVMCLNCL 312 (363)
Q Consensus 234 ~KKQPk~lieLLEks~~qGFkGVlA-aNSMYRIsqTiLln~e~~n~~~~erLfe~l~vmiSDIl~aCltNlp~VIs~kCL 312 (363)
.+..|+.+.++|-|- -|++|+.- +|-|-.|-+..- ..+.....-++...--|+.-+|+..+-|..| .-=-+
T Consensus 60 ~~~s~~e~~~~Ln~~--sGl~g~sG~s~D~R~l~~~~~-----~gd~~A~la~d~~~yri~k~Iga~~a~Lggv-DaiVF 131 (205)
T d2e1za2 60 TGQTLSDLERVVNKE--SGLLGISGLSSDLRVLEKAWH-----EGHERARLAIKTFVHRIARHIAGHAASLHRL-DGIIF 131 (205)
T ss_dssp HCCCHHHHHHHHHHS--CHHHHHHSSCSCHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHHHHHHTTCSSC-CEEEE
T ss_pred cCCCHHHHHHHHhhc--cCceeeeCCcchHHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CEEEE
Confidence 456788999999972 38888876 888865543221 2233455677888888999999998888653 34457
Q ss_pred chhhhhhhhhhhhhHh
Q 043555 313 SSTLDQREDCMRNTVY 328 (363)
Q Consensus 313 ~save~RE~sVR~Av~ 328 (363)
+-.|-|....||+.|.
T Consensus 132 TgGIGEn~~~vR~~i~ 147 (205)
T d2e1za2 132 TGGIGENSVLIRQLVI 147 (205)
T ss_dssp EHHHHHHCHHHHHHHH
T ss_pred eCccccccHHHHHHHH
Confidence 7889999989987664
No 8
>d1f39a_ b.87.1.1 (A:) lambda repressor C-terminal domain {Bacteriophage lambda [TaxId: 10710]}
Probab=22.05 E-value=17 Score=25.96 Aligned_cols=14 Identities=43% Similarity=0.631 Sum_probs=13.0
Q ss_pred ccceeeeeeccCCC
Q 043555 85 SSAVFMCTVMGNTM 98 (363)
Q Consensus 85 sS~~~~CtvM~NsM 98 (363)
|+++|...|-|+||
T Consensus 2 s~~~F~l~V~GdSM 15 (101)
T d1f39a_ 2 SASAFWLEVEGNSM 15 (101)
T ss_dssp CTTCEEEECCSSTT
T ss_pred CcCEEEEEEeCCcc
Confidence 67899999999999
No 9
>d1x9na3 d.142.2.1 (A:534-753) DNA ligase I (LIG1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.65 E-value=14 Score=29.03 Aligned_cols=32 Identities=22% Similarity=0.511 Sum_probs=26.0
Q ss_pred cChhHHHHHHHHhhhcccchhhc----cchhHHHHH
Q 043555 236 KQPEHLLQLLKQSNSQGFKGVLA----SNSIYKVSQ 267 (363)
Q Consensus 236 KQPk~lieLLEks~~qGFkGVlA----aNSMYRIsq 267 (363)
+-++.+.+++++...+|++|+.. .||-|+..|
T Consensus 169 ~~~~~~~~~~~~~~~~g~EGim~K~~~~~s~Y~~Gk 204 (220)
T d1x9na3 169 KDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAK 204 (220)
T ss_dssp CCHHHHHHHHHHHHHTSEEEEEEEESSSSCSSCTTT
T ss_pred CCHHHHHHHHHHHHHCCCceEEEeccCCCCCeecCC
Confidence 45677888899999999999964 689998753
No 10
>d1px5a1 a.160.1.2 (A:201-346) 2'-5'-oligoadenylate synthetase 1, OAS1, second domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=16.18 E-value=38 Score=27.39 Aligned_cols=32 Identities=44% Similarity=0.707 Sum_probs=21.7
Q ss_pred hhHHHHhcc-----ccChhHHHHHHH-----H-------hhhcccchhh
Q 043555 226 TDKWMQMGQ-----KKQPEHLLQLLK-----Q-------SNSQGFKGVL 257 (363)
Q Consensus 226 TdhWiq~G~-----KKQPk~lieLLE-----k-------s~~qGFkGVl 257 (363)
..||-|+=+ +.-|.+++|||- + +.++||+-|+
T Consensus 11 VKhWy~~~~~~~~~~lPpsYaLELLtiyAwE~g~~~~~f~~a~gFrtVl 59 (146)
T d1px5a1 11 VKHWYQTCKKTHGNKLPPQYALELLTVYAWEQGSRKTDFSTAQGFQTVL 59 (146)
T ss_dssp HHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHHTCCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCcHHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 358884432 335899999994 1 4578888775
Done!