BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043556
(166 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 8/161 (4%)
Query: 4 PHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLE--EKIR 61
PHV++IP P QGH+ PL + ++ L G +TFVN+EYNH+R+LKS G +
Sbjct: 9 PHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKS-RGPKAFDGFTDFN 67
Query: 62 LVSIPDGMEPWEDRNELGNKLKKILQ-----VMPGXXXXXXXXXXXXXXXXXXCFIADAY 116
SIPDG+ P E ++ + + Q + C ++D
Sbjct: 68 FESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDCC 127
Query: 117 MGWTMRIAEKMKLRRGVVWPSSAASVALCFRIPKLIDDGII 157
M +T++ AE+ +L + + SSA S+ ++ GII
Sbjct: 128 MSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGII 168
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
Query: 3 NPHVLVIPAPAQGHVIPLLEFSQCLAN-HGVRVTFV 37
PHV +IP+P GH+IPL+EF++ L + HG+ VTFV
Sbjct: 6 TPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFV 41
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 33.1 bits (74), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 3 NPHVLVIPAPAQGHVIPLLEFSQCLANH 30
N ++ IPAP GH+ LEF++ L NH
Sbjct: 9 NSELIFIPAPGIGHLASALEFAKLLTNH 36
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
Complexed With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Complexed With Udp-Glucose
Length = 465
Score = 33.1 bits (74), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 3 NPHVLVIPAPAQGHVIPLLEFSQCLANH 30
N ++ IPAP GH+ LEF++ L NH
Sbjct: 9 NSELIFIPAPGIGHLASALEFAKLLTNH 36
>pdb|2RDM|A Chain A, Crystal Structure Of Response Regulator Receiver Protein
From Sinorhizobium Medicae Wsm419
pdb|2RDM|B Chain B, Crystal Structure Of Response Regulator Receiver Protein
From Sinorhizobium Medicae Wsm419
pdb|2RDM|C Chain C, Crystal Structure Of Response Regulator Receiver Protein
From Sinorhizobium Medicae Wsm419
Length = 132
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 24/56 (42%)
Query: 13 AQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDG 68
A I LL+F L + G VT V+S LKS + + IR PDG
Sbjct: 11 ADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEXLKSGAAIDGVVTDIRFCQPPDG 66
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 53/138 (38%), Gaps = 11/138 (7%)
Query: 2 SNPHVLVIPAPAQGHVIPLLEFSQCLAN---HGVRVTFVNSEYNHQRVLKSLEGKNNLEE 58
+NPHV V+ P H PLL + LA H V F S+ N S+ + ++
Sbjct: 6 TNPHVAVLAFPFSTHAAPLLAVVRRLAAAAPHAVFSFFSTSQSNASIFHDSM---HTMQC 62
Query: 59 KIRLVSIPDGM-EPWEDRNELGNKLKKILQVMPGXXXXXXXXXXXXXXXXXXCFIADAYM 117
I+ I DG+ E + ++ + P C +ADA++
Sbjct: 63 NIKSYDISDGVPEGYVFAGRPQEDIELFTRAAPESFRQGMVMAVAETGRPVSCLVADAFI 122
Query: 118 GWTMRIAEKMKLRRGVVW 135
+ +A +M GV W
Sbjct: 123 WFAADMAAEM----GVAW 136
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNS 39
H+L GHV P L LA G R+T+V +
Sbjct: 6 HILFANVQGHGHVYPSLGLVSELARRGHRITYVTT 40
>pdb|2FUJ|A Chain A, A Putative Acyl-Coa Thioesterase From Xanthomonas
Campestris (Xc229)
Length = 137
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 11/54 (20%)
Query: 124 AEKMKLRRGVVWPSS-----------AASVALCFRIPKLIDDGIISSDGNYQIL 166
A + +R +VWP+ ++SV + RI D+G++ SDGN ++
Sbjct: 63 ATNVNYKRPLVWPNDILVELFVERLGSSSVTIGHRILDQKDEGVLYSDGNVVVV 116
>pdb|1HQK|A Chain A, Crystal Structure Analysis Of Lumazine Synthase From
Aquifex Aeolicus
pdb|1HQK|B Chain B, Crystal Structure Analysis Of Lumazine Synthase From
Aquifex Aeolicus
pdb|1HQK|C Chain C, Crystal Structure Analysis Of Lumazine Synthase From
Aquifex Aeolicus
pdb|1HQK|D Chain D, Crystal Structure Analysis Of Lumazine Synthase From
Aquifex Aeolicus
pdb|1HQK|E Chain E, Crystal Structure Analysis Of Lumazine Synthase From
Aquifex Aeolicus
pdb|1NQU|A Chain A, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
6,7-dioxo-5h-8-ribitylaminolumazine
pdb|1NQU|B Chain B, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
6,7-dioxo-5h-8-ribitylaminolumazine
pdb|1NQU|C Chain C, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
6,7-dioxo-5h-8-ribitylaminolumazine
pdb|1NQU|D Chain D, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
6,7-dioxo-5h-8-ribitylaminolumazine
pdb|1NQU|E Chain E, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
6,7-dioxo-5h-8-ribitylaminolumazine
pdb|1NQV|A Chain A, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-nitroso-6-ribityl-amino-2,4(1h,3h) Pyrimidinedione
pdb|1NQV|B Chain B, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-nitroso-6-ribityl-amino-2,4(1h,3h) Pyrimidinedione
pdb|1NQV|C Chain C, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-nitroso-6-ribityl-amino-2,4(1h,3h) Pyrimidinedione
pdb|1NQV|D Chain D, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-nitroso-6-ribityl-amino-2,4(1h,3h) Pyrimidinedione
pdb|1NQV|E Chain E, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-nitroso-6-ribityl-amino-2,4(1h,3h) Pyrimidinedione
pdb|1NQW|A Chain A, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-(6-d-ribitylamino-2,4(1h,3h)
Pyrimidinedione-5-yl)-1-pentyl-phosphonic Acid
pdb|1NQW|B Chain B, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-(6-d-ribitylamino-2,4(1h,3h)
Pyrimidinedione-5-yl)-1-pentyl-phosphonic Acid
pdb|1NQW|C Chain C, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-(6-d-ribitylamino-2,4(1h,3h)
Pyrimidinedione-5-yl)-1-pentyl-phosphonic Acid
pdb|1NQW|D Chain D, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-(6-d-ribitylamino-2,4(1h,3h)
Pyrimidinedione-5-yl)-1-pentyl-phosphonic Acid
pdb|1NQW|E Chain E, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
5-(6-d-ribitylamino-2,4(1h,3h)
Pyrimidinedione-5-yl)-1-pentyl-phosphonic Acid
pdb|1NQX|A Chain A, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
3-(7-hydroxy-8-ribityllumazine-6-yl)propionic Acid
pdb|1NQX|B Chain B, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
3-(7-hydroxy-8-ribityllumazine-6-yl)propionic Acid
pdb|1NQX|C Chain C, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
3-(7-hydroxy-8-ribityllumazine-6-yl)propionic Acid
pdb|1NQX|D Chain D, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
3-(7-hydroxy-8-ribityllumazine-6-yl)propionic Acid
pdb|1NQX|E Chain E, Crystal Structure Of Lumazine Synthase From Aquifex
Aeolicus In Complex With Inhibitor:
3-(7-hydroxy-8-ribityllumazine-6-yl)propionic Acid
Length = 154
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 7/66 (10%)
Query: 23 FSQCLANHGVRVTFVNSEYNHQRVLKSLEGK-------NNLEEKIRLVSIPDGMEPWEDR 75
+ L G+R V S +NH V + +EG EE I LV +P E
Sbjct: 4 YEGKLTAEGLRFGIVASRFNHALVDRLVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAA 63
Query: 76 NELGNK 81
EL K
Sbjct: 64 GELARK 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,470,221
Number of Sequences: 62578
Number of extensions: 146297
Number of successful extensions: 309
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 300
Number of HSP's gapped (non-prelim): 16
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)