Query 043556
Match_columns 166
No_of_seqs 124 out of 1104
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 06:12:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043556.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043556hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02562 UDP-glycosyltransfera 99.9 3E-25 6.5E-30 180.6 17.6 146 3-155 6-151 (448)
2 PLN02410 UDP-glucoronosyl/UDP- 99.9 2.1E-25 4.6E-30 181.4 15.7 145 3-154 7-152 (451)
3 PLN02173 UDP-glucosyl transfer 99.9 7.5E-25 1.6E-29 177.8 16.1 138 3-147 5-144 (449)
4 PLN02152 indole-3-acetate beta 99.9 1.2E-24 2.5E-29 177.0 17.1 145 1-150 1-149 (455)
5 PLN02448 UDP-glycosyltransfera 99.9 2.8E-24 6.1E-29 175.7 16.3 142 3-153 10-154 (459)
6 PLN02555 limonoid glucosyltran 99.9 2.7E-24 5.9E-29 175.9 15.9 147 3-150 7-159 (480)
7 PLN00164 glucosyltransferase; 99.9 3.7E-24 8E-29 175.5 16.1 146 1-151 1-154 (480)
8 PLN02863 UDP-glucoronosyl/UDP- 99.9 6.3E-24 1.4E-28 173.9 15.7 141 2-150 8-157 (477)
9 PLN02670 transferase, transfer 99.9 8E-24 1.7E-28 172.7 15.4 144 3-155 6-158 (472)
10 PLN02210 UDP-glucosyl transfer 99.9 2E-23 4.4E-28 170.2 15.4 136 3-149 8-145 (456)
11 PLN02534 UDP-glycosyltransfera 99.9 3E-23 6.5E-28 170.0 16.4 142 3-148 8-160 (491)
12 PLN02207 UDP-glycosyltransfera 99.9 3.5E-23 7.5E-28 168.8 16.6 151 1-152 1-160 (468)
13 PLN02554 UDP-glycosyltransfera 99.9 2.7E-23 5.8E-28 170.7 15.7 147 2-152 1-157 (481)
14 PLN03004 UDP-glycosyltransfera 99.9 8.1E-23 1.8E-27 166.1 15.9 149 1-151 1-156 (451)
15 PLN02992 coniferyl-alcohol glu 99.9 9.3E-23 2E-27 166.7 15.7 139 3-151 5-148 (481)
16 PLN00414 glycosyltransferase f 99.9 1E-22 2.2E-27 165.6 15.1 136 1-147 1-146 (446)
17 PLN03007 UDP-glucosyltransfera 99.9 1.7E-22 3.7E-27 166.0 16.0 143 3-148 5-163 (482)
18 PLN02167 UDP-glycosyltransfera 99.9 2.2E-22 4.8E-27 165.0 15.9 151 1-151 1-162 (475)
19 PLN02208 glycosyltransferase f 99.9 2E-22 4.3E-27 163.7 14.7 137 1-149 1-147 (442)
20 PLN03015 UDP-glucosyl transfer 99.9 3.9E-22 8.6E-27 162.4 16.3 147 1-151 1-152 (470)
21 PLN02764 glycosyltransferase f 99.9 1.6E-21 3.4E-26 158.4 16.2 136 3-147 5-147 (453)
22 cd03784 GT1_Gtf_like This fami 99.8 1.6E-18 3.4E-23 139.3 11.6 125 4-140 1-137 (401)
23 TIGR01426 MGT glycosyltransfer 99.7 3.5E-17 7.6E-22 131.3 11.1 118 9-138 1-123 (392)
24 PF03033 Glyco_transf_28: Glyc 99.6 4.7E-15 1E-19 102.6 8.2 125 6-140 1-133 (139)
25 KOG1192 UDP-glucuronosyl and U 99.3 7.2E-12 1.6E-16 103.4 7.1 147 3-149 5-157 (496)
26 PHA03392 egt ecdysteroid UDP-g 99.2 2E-10 4.4E-15 95.3 11.3 127 3-140 20-170 (507)
27 COG1819 Glycosyl transferases, 99.0 5E-10 1.1E-14 90.6 6.8 125 3-140 1-128 (406)
28 PF00201 UDPGT: UDP-glucoronos 99.0 2.9E-11 6.3E-16 100.0 -3.1 122 5-137 2-149 (500)
29 PF13528 Glyco_trans_1_3: Glyc 98.9 3.1E-08 6.7E-13 77.2 11.5 120 4-140 1-126 (318)
30 TIGR00661 MJ1255 conserved hyp 98.8 5.8E-08 1.3E-12 76.2 11.4 120 5-138 1-123 (321)
31 PRK12446 undecaprenyldiphospho 98.6 1.1E-06 2.3E-11 70.1 11.4 119 5-139 3-125 (352)
32 COG0707 MurG UDP-N-acetylgluco 98.2 3.7E-05 8.1E-10 61.4 11.5 122 5-141 2-127 (357)
33 TIGR01133 murG undecaprenyldip 98.1 0.00011 2.4E-09 57.8 12.3 114 5-134 2-119 (348)
34 PRK00726 murG undecaprenyldiph 98.0 0.00014 3.1E-09 57.5 12.2 116 4-134 2-120 (357)
35 cd03785 GT1_MurG MurG is an N- 98.0 0.00014 3E-09 57.2 12.0 115 5-134 1-118 (350)
36 TIGR00215 lpxB lipid-A-disacch 97.9 0.00011 2.3E-09 59.3 10.0 112 3-134 5-119 (385)
37 PRK00025 lpxB lipid-A-disaccha 97.4 0.002 4.4E-08 51.4 10.2 37 4-41 2-38 (380)
38 TIGR03590 PseG pseudaminic aci 97.3 0.0048 1E-07 47.7 11.2 47 13-68 13-62 (279)
39 cd03816 GT1_ALG1_like This fam 97.3 0.009 2E-07 48.6 13.2 40 2-41 2-41 (415)
40 cd03818 GT1_ExpC_like This fam 97.1 0.013 2.7E-07 47.2 12.1 115 5-135 1-116 (396)
41 PF13477 Glyco_trans_4_2: Glyc 97.0 0.024 5.2E-07 38.5 10.9 103 5-136 1-107 (139)
42 cd03800 GT1_Sucrose_synthase T 97.0 0.0065 1.4E-07 48.2 9.0 109 14-135 21-131 (398)
43 PF13579 Glyco_trans_4_4: Glyc 96.8 0.0043 9.3E-08 42.5 5.9 98 19-137 6-105 (160)
44 PRK02261 methylaspartate mutas 96.8 0.09 1.9E-06 36.4 12.5 46 1-46 1-46 (137)
45 PRK13609 diacylglycerol glucos 96.7 0.005 1.1E-07 49.2 6.5 40 1-40 1-42 (380)
46 PRK10307 putative glycosyl tra 96.7 0.025 5.4E-07 45.7 10.5 38 4-41 1-42 (412)
47 COG4671 Predicted glycosyl tra 96.7 0.0064 1.4E-07 48.2 6.4 59 3-69 9-71 (400)
48 cd03823 GT1_ExpE7_like This fa 96.6 0.043 9.3E-07 42.3 10.9 30 14-43 15-44 (359)
49 PF04007 DUF354: Protein of un 96.6 0.088 1.9E-06 41.9 12.5 113 15-149 11-124 (335)
50 PLN02871 UDP-sulfoquinovose:DA 96.5 0.033 7.2E-07 45.9 10.3 41 2-42 57-102 (465)
51 cd03794 GT1_wbuB_like This fam 96.5 0.041 8.8E-07 42.7 10.3 38 5-42 1-42 (394)
52 cd03808 GT1_cap1E_like This fa 96.5 0.062 1.4E-06 41.2 10.9 40 5-44 1-40 (359)
53 cd03814 GT1_like_2 This family 96.4 0.03 6.5E-07 43.4 8.7 29 14-42 14-42 (364)
54 COG3980 spsG Spore coat polysa 96.2 0.05 1.1E-06 42.1 8.5 99 4-141 1-106 (318)
55 cd04962 GT1_like_5 This family 96.1 0.097 2.1E-06 41.1 10.3 37 5-41 2-39 (371)
56 TIGR02470 sucr_synth sucrose s 95.9 0.19 4.1E-06 44.4 11.7 124 3-134 255-414 (784)
57 cd02067 B12-binding B12 bindin 95.8 0.25 5.4E-06 32.9 9.8 39 5-43 1-39 (119)
58 PF12000 Glyco_trans_4_3: Gkyc 95.7 0.1 2.3E-06 37.4 8.2 94 29-135 1-95 (171)
59 cd03805 GT1_ALG2_like This fam 95.7 0.36 7.8E-06 38.4 12.0 38 4-41 1-40 (392)
60 cd03817 GT1_UGDG_like This fam 95.5 0.21 4.6E-06 38.5 9.8 31 12-42 12-42 (374)
61 TIGR02468 sucrsPsyn_pln sucros 95.3 0.37 8E-06 43.8 11.6 123 15-137 196-342 (1050)
62 cd03796 GT1_PIG-A_like This fa 95.2 0.23 5E-06 40.0 9.6 101 15-134 15-119 (398)
63 cd03819 GT1_WavL_like This fam 95.1 0.67 1.4E-05 36.0 11.7 98 14-136 10-109 (355)
64 TIGR03449 mycothiol_MshA UDP-N 95.0 0.38 8.2E-06 38.6 10.3 112 14-137 20-133 (405)
65 PLN00142 sucrose synthase 94.9 0.23 4.9E-06 44.0 9.1 108 22-137 319-440 (815)
66 TIGR02472 sucr_P_syn_N sucrose 94.9 0.41 8.9E-06 39.2 10.2 113 16-136 28-145 (439)
67 cd03802 GT1_AviGT4_like This f 94.9 0.27 5.8E-06 37.9 8.7 39 4-42 1-47 (335)
68 cd02070 corrinoid_protein_B12- 94.7 0.81 1.8E-05 33.6 10.5 44 3-46 82-125 (201)
69 TIGR02370 pyl_corrinoid methyl 94.2 0.99 2.2E-05 33.1 10.0 45 3-47 84-128 (197)
70 PF08660 Alg14: Oligosaccharid 94.1 0.73 1.6E-05 33.0 8.8 35 6-41 1-37 (170)
71 cd04955 GT1_like_6 This family 93.9 0.76 1.7E-05 35.8 9.5 45 15-66 16-60 (363)
72 cd03801 GT1_YqgM_like This fam 93.7 0.66 1.4E-05 35.3 8.8 30 14-43 14-43 (374)
73 PF02142 MGS: MGS-like domain 93.2 0.37 7.9E-06 30.9 5.5 85 20-133 2-95 (95)
74 cd03820 GT1_amsD_like This fam 92.8 1.3 2.8E-05 33.6 9.1 30 14-43 13-42 (348)
75 cd03812 GT1_CapH_like This fam 92.8 1.8 3.9E-05 33.6 10.0 38 6-43 2-41 (358)
76 PRK05986 cob(I)alamin adenolsy 92.4 3.2 7E-05 30.4 11.1 38 2-39 21-58 (191)
77 cd03795 GT1_like_4 This family 92.4 3.1 6.7E-05 32.2 10.8 31 13-43 13-43 (357)
78 cd02069 methionine_synthase_B1 91.8 2.8 6E-05 31.2 9.3 44 3-46 88-131 (213)
79 PF13439 Glyco_transf_4: Glyco 91.8 0.24 5.2E-06 34.2 3.5 28 15-42 13-40 (177)
80 PLN02846 digalactosyldiacylgly 91.2 0.41 9E-06 39.8 4.8 39 3-41 4-47 (462)
81 cd01425 RPS2 Ribosomal protein 91.2 2.4 5.2E-05 31.0 8.4 44 106-149 126-171 (193)
82 COG1817 Uncharacterized protei 91.1 6.4 0.00014 31.2 11.3 114 13-148 9-124 (346)
83 PRK05749 3-deoxy-D-manno-octul 90.9 1.4 3E-05 35.8 7.6 96 8-135 54-154 (425)
84 PLN02275 transferase, transfer 90.8 7.2 0.00016 31.1 13.7 126 3-137 4-135 (371)
85 PRK13932 stationary phase surv 90.7 6.2 0.00014 30.3 10.4 41 3-45 5-45 (257)
86 cd03825 GT1_wcfI_like This fam 90.7 0.48 1E-05 36.9 4.6 39 4-42 1-41 (365)
87 cd04951 GT1_WbdM_like This fam 90.5 0.33 7.2E-06 37.7 3.6 36 6-41 2-39 (360)
88 TIGR03568 NeuC_NnaA UDP-N-acet 90.4 6.1 0.00013 31.7 10.7 116 5-137 2-126 (365)
89 cd00561 CobA_CobO_BtuR ATP:cor 90.1 5.2 0.00011 28.4 11.4 33 4-36 3-35 (159)
90 cd03786 GT1_UDP-GlcNAc_2-Epime 90.1 1 2.2E-05 35.5 6.0 33 10-42 5-38 (363)
91 PF02441 Flavoprotein: Flavopr 89.8 0.61 1.3E-05 31.6 4.0 44 4-48 1-44 (129)
92 PF02951 GSH-S_N: Prokaryotic 89.7 0.72 1.6E-05 31.1 4.2 39 4-42 1-42 (119)
93 cd03798 GT1_wlbH_like This fam 89.5 3.7 8E-05 31.3 8.7 31 13-43 13-43 (377)
94 COG1703 ArgK Putative periplas 89.3 3.7 8E-05 32.3 8.2 40 4-43 52-91 (323)
95 cd03821 GT1_Bme6_like This fam 89.2 0.74 1.6E-05 35.4 4.6 30 13-42 13-42 (375)
96 PRK00654 glgA glycogen synthas 89.1 0.74 1.6E-05 38.1 4.8 38 4-41 1-44 (466)
97 PRK10916 ADP-heptose:LPS hepto 88.9 8.8 0.00019 30.4 10.6 45 4-48 1-47 (348)
98 COG2185 Sbm Methylmalonyl-CoA 88.3 1.7 3.7E-05 30.2 5.3 45 1-45 10-54 (143)
99 PRK08506 replicative DNA helic 88.1 9.2 0.0002 32.0 10.5 41 6-46 195-235 (472)
100 PRK14099 glycogen synthase; Pr 88.0 1.2 2.7E-05 37.2 5.3 41 1-41 1-47 (485)
101 cd02071 MM_CoA_mut_B12_BD meth 88.0 6.1 0.00013 26.4 11.9 42 5-46 1-42 (122)
102 TIGR00236 wecB UDP-N-acetylglu 87.9 11 0.00023 30.0 10.5 110 5-134 2-116 (365)
103 TIGR03600 phage_DnaB phage rep 87.3 13 0.00029 30.4 10.9 41 6-46 197-238 (421)
104 COG2910 Putative NADH-flavin r 86.5 1 2.2E-05 32.9 3.5 34 4-42 1-35 (211)
105 PF02310 B12-binding: B12 bind 86.5 4 8.8E-05 26.8 6.3 37 5-41 2-38 (121)
106 PRK05595 replicative DNA helic 86.1 11 0.00025 31.1 10.0 41 6-46 204-245 (444)
107 cd03811 GT1_WabH_like This fam 86.1 1.5 3.4E-05 33.2 4.7 39 5-43 1-41 (353)
108 cd00984 DnaB_C DnaB helicase C 86.1 12 0.00026 27.8 10.1 42 6-47 16-58 (242)
109 PRK01175 phosphoribosylformylg 86.0 14 0.0003 28.4 10.0 59 1-70 1-59 (261)
110 PRK08760 replicative DNA helic 85.9 13 0.00027 31.2 10.2 41 6-46 232-273 (476)
111 TIGR02095 glgA glycogen/starch 85.6 1.8 3.8E-05 35.8 5.0 39 4-42 1-45 (473)
112 smart00851 MGS MGS-like domain 85.5 6.8 0.00015 24.5 8.4 27 20-48 2-28 (90)
113 PRK06321 replicative DNA helic 85.4 18 0.0004 30.3 10.8 41 6-46 229-270 (472)
114 cd03792 GT1_Trehalose_phosphor 85.4 8.2 0.00018 30.6 8.6 28 15-42 13-40 (372)
115 PRK08305 spoVFB dipicolinate s 85.3 1.6 3.6E-05 32.0 4.1 41 2-43 4-45 (196)
116 cd03806 GT1_ALG11_like This fa 85.2 10 0.00022 31.0 9.2 29 15-43 15-45 (419)
117 TIGR00665 DnaB replicative DNA 85.1 16 0.00036 29.9 10.4 41 6-46 198-239 (434)
118 COG0381 WecB UDP-N-acetylgluco 84.9 20 0.00043 29.2 10.4 116 1-134 1-122 (383)
119 cd03789 GT1_LPS_heptosyltransf 84.8 15 0.00033 27.9 10.5 44 5-48 1-46 (279)
120 COG1519 KdtA 3-deoxy-D-manno-o 84.7 18 0.0004 29.7 10.2 98 7-136 52-154 (419)
121 cd01423 MGS_CPS_I_III Methylgl 84.7 9.1 0.0002 25.2 7.4 87 16-133 11-106 (116)
122 TIGR03492 conserved hypothetic 84.3 12 0.00027 30.4 9.3 109 14-136 7-121 (396)
123 PF01975 SurE: Survival protei 84.3 2.4 5.3E-05 31.1 4.7 41 4-45 1-41 (196)
124 PRK10422 lipopolysaccharide co 84.1 19 0.0004 28.6 10.1 45 3-47 5-51 (352)
125 TIGR02195 heptsyl_trn_II lipop 83.8 16 0.00035 28.6 9.6 43 5-47 1-45 (334)
126 PRK01021 lpxB lipid-A-disaccha 83.8 16 0.00034 31.7 9.8 42 92-136 298-344 (608)
127 PF04413 Glycos_transf_N: 3-De 83.6 4.5 9.8E-05 29.3 5.9 97 11-139 28-129 (186)
128 cd03791 GT1_Glycogen_synthase_ 83.1 2.2 4.8E-05 35.1 4.6 24 18-41 20-43 (476)
129 cd01424 MGS_CPS_II Methylglyox 83.0 10 0.00023 24.6 8.7 84 15-133 10-100 (110)
130 PHA02542 41 41 helicase; Provi 83.0 11 0.00023 31.6 8.5 41 6-46 193-233 (473)
131 PRK12311 rpsB 30S ribosomal pr 83.0 11 0.00024 30.0 8.2 44 106-149 151-196 (326)
132 cd01635 Glycosyltransferase_GT 83.0 2.4 5.2E-05 30.2 4.3 26 13-38 12-37 (229)
133 TIGR00715 precor6x_red precorr 82.6 8.7 0.00019 29.4 7.3 23 20-42 12-34 (256)
134 cd03799 GT1_amsK_like This is 80.9 4.1 8.9E-05 31.5 5.2 38 5-42 1-39 (355)
135 TIGR00708 cobA cob(I)alamin ad 80.2 19 0.00042 25.9 10.6 35 3-37 5-39 (173)
136 PRK07773 replicative DNA helic 80.0 27 0.00057 31.8 10.4 42 6-47 220-262 (886)
137 cd03807 GT1_WbnK_like This fam 79.9 24 0.00052 26.8 11.3 30 12-41 10-39 (365)
138 cd05844 GT1_like_7 Glycosyltra 79.9 25 0.00054 27.3 9.4 29 106-134 81-111 (367)
139 PRK13608 diacylglycerol glucos 79.8 6 0.00013 32.0 5.9 35 3-37 5-43 (391)
140 PRK05636 replicative DNA helic 79.1 31 0.00067 29.2 10.0 41 6-46 268-309 (505)
141 PF04127 DFP: DNA / pantothena 78.6 2.7 5.9E-05 30.5 3.2 38 4-41 4-53 (185)
142 PF02572 CobA_CobO_BtuR: ATP:c 78.6 22 0.00048 25.6 9.2 100 3-118 3-107 (172)
143 PRK09165 replicative DNA helic 78.5 28 0.00061 29.3 9.6 42 6-47 220-276 (497)
144 COG1066 Sms Predicted ATP-depe 78.0 21 0.00045 29.6 8.2 40 6-46 96-135 (456)
145 PF04244 DPRP: Deoxyribodipyri 77.4 3.8 8.3E-05 30.7 3.8 26 16-41 47-72 (224)
146 PRK09620 hypothetical protein; 76.7 4.5 9.8E-05 30.4 4.1 40 1-40 1-52 (229)
147 PF08323 Glyco_transf_5: Starc 76.7 2.4 5.2E-05 32.1 2.6 24 18-41 20-43 (245)
148 PF12146 Hydrolase_4: Putative 76.6 6.3 0.00014 24.3 4.1 34 4-37 16-49 (79)
149 TIGR02193 heptsyl_trn_I lipopo 76.4 4.6 0.0001 31.4 4.2 44 5-48 1-46 (319)
150 PLN02605 monogalactosyldiacylg 76.2 26 0.00057 28.1 8.6 31 7-37 3-36 (382)
151 PF06506 PrpR_N: Propionate ca 76.2 4.7 0.0001 28.8 3.9 44 91-140 112-155 (176)
152 PRK07313 phosphopantothenoylcy 75.2 4.8 0.0001 29.2 3.7 41 4-45 2-42 (182)
153 TIGR02852 spore_dpaB dipicolin 75.1 4.5 9.9E-05 29.5 3.6 39 5-43 2-40 (187)
154 TIGR02201 heptsyl_trn_III lipo 75.0 39 0.00084 26.6 10.3 105 5-133 1-108 (344)
155 PRK06904 replicative DNA helic 74.8 50 0.0011 27.7 11.2 41 6-46 224-265 (472)
156 COG1484 DnaC DNA replication p 74.8 9.1 0.0002 29.2 5.3 46 4-49 106-151 (254)
157 PF07894 DUF1669: Protein of u 74.8 5.6 0.00012 31.0 4.1 47 90-137 132-183 (284)
158 PRK08006 replicative DNA helic 74.6 50 0.0011 27.7 11.7 41 6-46 227-268 (471)
159 PF09314 DUF1972: Domain of un 74.5 4.1 8.8E-05 29.7 3.2 45 15-66 17-62 (185)
160 KOG0780 Signal recognition par 74.2 22 0.00047 29.3 7.4 44 5-48 103-146 (483)
161 PF01210 NAD_Gly3P_dh_N: NAD-d 74.0 5.1 0.00011 28.0 3.6 21 21-41 12-32 (157)
162 TIGR01007 eps_fam capsular exo 73.6 31 0.00068 24.9 12.3 39 3-41 16-56 (204)
163 TIGR00959 ffh signal recogniti 73.2 31 0.00067 28.6 8.3 41 5-45 101-142 (428)
164 PRK10964 ADP-heptose:LPS hepto 73.1 7.5 0.00016 30.4 4.7 43 4-46 1-45 (322)
165 COG0541 Ffh Signal recognition 73.0 27 0.00058 29.0 7.8 44 5-48 102-145 (451)
166 cd03822 GT1_ecORF704_like This 72.9 6.6 0.00014 30.2 4.3 38 5-42 1-41 (366)
167 PRK06249 2-dehydropantoate 2-r 72.9 5.6 0.00012 31.1 3.9 36 1-41 3-38 (313)
168 COG0162 TyrS Tyrosyl-tRNA synt 71.9 4.9 0.00011 32.9 3.4 36 5-41 36-74 (401)
169 PRK04940 hypothetical protein; 71.6 14 0.00031 26.8 5.4 36 107-142 60-96 (180)
170 PLN02501 digalactosyldiacylgly 71.6 69 0.0015 28.7 10.3 39 3-42 322-366 (794)
171 PRK11519 tyrosine kinase; Prov 71.5 73 0.0016 28.2 13.4 116 4-135 526-667 (719)
172 TIGR02655 circ_KaiC circadian 71.3 61 0.0013 27.2 10.9 44 5-48 265-308 (484)
173 PRK05748 replicative DNA helic 71.2 58 0.0013 26.9 11.0 41 6-46 206-247 (448)
174 COG0052 RpsB Ribosomal protein 71.0 3.1 6.6E-05 31.7 1.9 43 107-149 156-200 (252)
175 TIGR00347 bioD dethiobiotin sy 70.6 33 0.00071 23.8 9.8 28 10-37 5-32 (166)
176 PRK14089 ipid-A-disaccharide s 70.2 12 0.00026 30.0 5.2 31 106-136 75-110 (347)
177 PRK04020 rps2P 30S ribosomal p 70.0 3.8 8.2E-05 30.4 2.2 33 107-139 114-148 (204)
178 PF02558 ApbA: Ketopantoate re 69.7 10 0.00022 25.9 4.2 27 22-48 12-38 (151)
179 TIGR00421 ubiX_pad polyprenyl 69.6 6.8 0.00015 28.4 3.4 40 6-46 2-41 (181)
180 PF07355 GRDB: Glycine/sarcosi 69.4 12 0.00026 30.0 5.0 38 93-133 69-116 (349)
181 PRK07004 replicative DNA helic 69.2 67 0.0015 26.8 10.4 41 6-46 216-257 (460)
182 PF00070 Pyr_redox: Pyridine n 69.0 9.4 0.0002 23.1 3.6 23 19-41 10-32 (80)
183 PF10087 DUF2325: Uncharacteri 68.8 13 0.00028 23.7 4.3 36 107-142 48-89 (97)
184 TIGR02113 coaC_strep phosphopa 68.1 10 0.00022 27.3 4.0 40 5-45 2-41 (177)
185 PF07302 AroM: AroM protein; 67.7 16 0.00036 27.4 5.2 46 92-140 166-214 (221)
186 TIGR02699 archaeo_AfpA archaeo 67.6 12 0.00026 27.0 4.3 30 15-44 10-41 (174)
187 PRK05299 rpsB 30S ribosomal pr 67.5 4.8 0.0001 30.9 2.3 44 106-149 156-201 (258)
188 TIGR01012 Sa_S2_E_A ribosomal 67.2 4.3 9.3E-05 29.9 2.0 35 107-141 108-144 (196)
189 PF13450 NAD_binding_8: NAD(P) 67.2 8.9 0.00019 22.8 3.1 21 21-41 9-29 (68)
190 TIGR01011 rpsB_bact ribosomal 66.6 5.1 0.00011 30.1 2.3 44 106-149 154-199 (225)
191 PLN02891 IMP cyclohydrolase 65.9 19 0.00041 30.7 5.6 43 18-71 33-77 (547)
192 PF09001 DUF1890: Domain of un 65.9 11 0.00023 26.1 3.6 32 17-48 13-44 (139)
193 CHL00067 rps2 ribosomal protei 65.5 6.2 0.00013 29.7 2.6 44 106-149 160-205 (230)
194 cd02065 B12-binding_like B12 b 65.4 23 0.0005 23.1 5.2 41 6-46 2-42 (125)
195 PRK08229 2-dehydropantoate 2-r 65.0 11 0.00023 29.7 4.0 34 3-41 2-35 (341)
196 PRK08840 replicative DNA helic 64.8 84 0.0018 26.4 11.7 41 6-46 220-261 (464)
197 COG4081 Uncharacterized protei 64.4 16 0.00034 25.1 4.0 29 14-42 15-43 (148)
198 PF02684 LpxB: Lipid-A-disacch 64.4 20 0.00044 29.1 5.5 35 93-130 71-108 (373)
199 TIGR00745 apbA_panE 2-dehydrop 64.3 9.7 0.00021 29.1 3.6 26 22-47 5-30 (293)
200 cd01121 Sms Sms (bacterial rad 64.1 77 0.0017 25.7 11.2 41 6-46 85-125 (372)
201 PRK13982 bifunctional SbtC-lik 63.6 14 0.0003 31.0 4.5 37 4-40 257-305 (475)
202 PRK05579 bifunctional phosphop 63.5 16 0.00036 29.9 4.9 43 2-45 5-47 (399)
203 cd01018 ZntC Metal binding pro 63.5 35 0.00076 26.0 6.5 50 92-144 205-256 (266)
204 COG0467 RAD55 RecA-superfamily 63.2 25 0.00055 26.6 5.7 46 4-49 24-69 (260)
205 PRK05920 aromatic acid decarbo 63.1 19 0.0004 26.7 4.7 43 3-46 3-45 (204)
206 PTZ00254 40S ribosomal protein 63.0 6.5 0.00014 30.0 2.3 34 107-140 118-153 (249)
207 PRK11823 DNA repair protein Ra 62.3 92 0.002 25.9 11.0 41 6-46 83-123 (446)
208 TIGR00521 coaBC_dfp phosphopan 62.0 16 0.00034 29.9 4.5 43 2-45 2-44 (390)
209 COG1797 CobB Cobyrinic acid a, 61.9 12 0.00026 31.0 3.7 31 7-37 5-35 (451)
210 TIGR01918 various_sel_PB selen 61.8 21 0.00045 29.5 5.0 38 94-134 66-113 (431)
211 TIGR01917 gly_red_sel_B glycin 61.7 21 0.00045 29.5 5.0 38 94-134 66-113 (431)
212 PRK11064 wecC UDP-N-acetyl-D-m 61.6 15 0.00033 30.1 4.4 36 1-41 1-36 (415)
213 PRK09922 UDP-D-galactose:(gluc 61.3 22 0.00047 28.1 5.2 39 4-42 1-44 (359)
214 PRK15062 hydrogenase isoenzyme 61.2 61 0.0013 26.3 7.5 63 91-157 173-241 (364)
215 PRK07206 hypothetical protein; 61.1 80 0.0017 25.6 8.5 35 3-42 2-36 (416)
216 COG2874 FlaH Predicted ATPases 60.5 47 0.001 25.1 6.3 34 13-46 38-71 (235)
217 COG2861 Uncharacterized protei 60.4 33 0.00072 26.1 5.6 40 89-133 136-178 (250)
218 PLN02939 transferase, transfer 59.9 23 0.00049 32.5 5.4 39 3-41 481-525 (977)
219 KOG0081 GTPase Rab27, small G 59.8 34 0.00073 24.6 5.2 46 93-138 109-165 (219)
220 PRK09739 hypothetical protein; 59.7 36 0.00077 24.7 5.7 39 1-39 1-42 (199)
221 TIGR00234 tyrS tyrosyl-tRNA sy 59.5 9.8 0.00021 30.9 2.9 34 7-41 36-72 (377)
222 PRK12342 hypothetical protein; 59.4 21 0.00045 27.4 4.5 31 107-137 109-145 (254)
223 PF05728 UPF0227: Uncharacteri 59.4 46 0.00099 24.2 6.1 36 109-144 61-97 (187)
224 PRK06719 precorrin-2 dehydroge 59.3 17 0.00037 25.5 3.8 33 3-40 13-45 (157)
225 TIGR00853 pts-lac PTS system, 58.9 37 0.00079 21.7 5.0 40 1-40 1-40 (95)
226 PRK06029 3-octaprenyl-4-hydrox 58.8 21 0.00046 25.9 4.3 43 4-47 2-45 (185)
227 PF03720 UDPG_MGDP_dh_C: UDP-g 58.8 15 0.00033 23.8 3.3 29 18-46 17-45 (106)
228 PRK10481 hypothetical protein; 58.7 25 0.00055 26.4 4.8 45 93-140 171-218 (224)
229 PRK06732 phosphopantothenate-- 58.6 13 0.00029 27.8 3.3 20 21-40 30-49 (229)
230 PF01380 SIS: SIS domain SIS d 58.4 32 0.0007 22.5 5.0 35 10-44 59-93 (131)
231 COG3349 Uncharacterized conser 58.4 12 0.00026 31.4 3.3 33 5-42 2-34 (485)
232 cd01141 TroA_d Periplasmic bin 57.8 21 0.00046 25.2 4.2 31 106-136 68-100 (186)
233 KOG2585 Uncharacterized conser 57.4 25 0.00055 29.1 4.8 36 2-40 265-302 (453)
234 PRK14569 D-alanyl-alanine synt 57.2 35 0.00075 26.5 5.6 40 1-40 1-44 (296)
235 COG0859 RfaF ADP-heptose:LPS h 57.0 96 0.0021 24.5 9.1 107 4-136 2-110 (334)
236 PF03403 PAF-AH_p_II: Platelet 56.9 12 0.00026 30.4 3.0 37 4-40 100-136 (379)
237 KOG1509 Predicted nucleic acid 56.9 40 0.00088 24.9 5.4 76 29-112 7-82 (209)
238 cd02032 Bchl_like This family 56.9 26 0.00057 26.5 4.8 36 5-40 2-37 (267)
239 PRK06179 short chain dehydroge 56.6 29 0.00062 26.0 5.0 37 1-40 1-37 (270)
240 PRK07414 cob(I)yrinic acid a,c 56.6 74 0.0016 23.1 9.5 35 4-38 22-56 (178)
241 COG1255 Uncharacterized protei 56.6 14 0.0003 24.9 2.7 21 19-39 24-44 (129)
242 TIGR02700 flavo_MJ0208 archaeo 56.2 25 0.00055 26.4 4.5 34 13-46 8-44 (234)
243 PRK06522 2-dehydropantoate 2-r 56.1 21 0.00045 27.4 4.2 31 5-40 2-32 (304)
244 KOG1053 Glutamate-gated NMDA-t 56.0 7.1 0.00015 35.2 1.6 75 57-135 686-760 (1258)
245 CHL00072 chlL photochlorophyll 55.8 31 0.00067 26.8 5.1 37 5-41 2-38 (290)
246 PRK06849 hypothetical protein; 55.6 31 0.00068 27.8 5.2 36 3-42 4-39 (389)
247 cd02034 CooC The accessory pro 55.5 41 0.00088 22.3 5.0 37 5-41 1-37 (116)
248 cd01981 Pchlide_reductase_B Pc 55.5 24 0.00053 29.0 4.6 28 106-136 369-396 (430)
249 TIGR01005 eps_transp_fam exopo 55.4 1.5E+02 0.0033 26.3 12.0 39 4-42 546-586 (754)
250 PRK13604 luxD acyl transferase 54.9 36 0.00078 26.9 5.3 33 5-37 38-70 (307)
251 PF00318 Ribosomal_S2: Ribosom 54.8 8.3 0.00018 28.6 1.7 44 106-149 142-187 (211)
252 KOG2941 Beta-1,4-mannosyltrans 54.5 1.2E+02 0.0026 24.8 10.3 57 3-67 12-70 (444)
253 TIGR01281 DPOR_bchL light-inde 54.3 32 0.00069 26.1 4.9 35 5-39 2-36 (268)
254 KOG1014 17 beta-hydroxysteroid 54.2 14 0.00031 29.1 2.9 32 5-39 50-81 (312)
255 PRK03359 putative electron tra 54.1 28 0.00061 26.7 4.5 31 107-137 112-148 (256)
256 PF02350 Epimerase_2: UDP-N-ac 54.0 17 0.00037 29.0 3.5 40 92-137 58-100 (346)
257 PRK14106 murD UDP-N-acetylmura 54.0 28 0.00061 28.5 4.8 34 3-41 5-38 (450)
258 PRK10427 putative PTS system f 53.7 44 0.00096 22.2 4.9 39 3-41 2-43 (114)
259 cd01983 Fer4_NifH The Fer4_Nif 53.6 47 0.001 19.9 4.9 33 6-38 2-34 (99)
260 PRK12921 2-dehydropantoate 2-r 53.5 23 0.0005 27.3 4.1 31 5-40 2-32 (305)
261 COG0300 DltE Short-chain dehyd 53.5 15 0.00033 28.3 2.9 35 3-40 5-39 (265)
262 PF14626 RNase_Zc3h12a_2: Zc3h 53.0 16 0.00034 24.6 2.6 30 17-46 9-38 (122)
263 COG0665 DadA Glycine/D-amino a 52.6 20 0.00043 28.4 3.7 34 3-41 4-37 (387)
264 PF06925 MGDG_synth: Monogalac 52.6 51 0.0011 23.1 5.4 41 92-138 80-126 (169)
265 PF01555 N6_N4_Mtase: DNA meth 52.6 30 0.00066 24.9 4.4 42 93-139 181-224 (231)
266 PF08026 Antimicrobial_5: Bee 52.5 1.7 3.6E-05 22.5 -1.6 25 8-32 15-39 (39)
267 PF13460 NAD_binding_10: NADH( 52.4 18 0.0004 25.3 3.1 22 21-42 12-33 (183)
268 COG0503 Apt Adenine/guanine ph 52.1 40 0.00086 24.3 4.8 30 106-135 52-83 (179)
269 PF03808 Glyco_tran_WecB: Glyc 52.0 83 0.0018 22.3 10.9 100 18-141 35-139 (172)
270 COG4126 Hydantoin racemase [Am 52.0 43 0.00094 25.2 5.0 36 106-141 68-104 (230)
271 COG0299 PurN Folate-dependent 52.0 46 0.001 24.5 5.0 48 92-139 13-61 (200)
272 TIGR00288 conserved hypothetic 51.5 60 0.0013 23.1 5.5 26 13-41 114-139 (160)
273 PHA03366 FGAM-synthase; Provis 51.3 1.6E+02 0.0034 28.4 9.4 106 2-125 1027-1132(1304)
274 PRK13234 nifH nitrogenase redu 51.3 44 0.00096 25.9 5.3 41 1-41 1-42 (295)
275 PRK05234 mgsA methylglyoxal sy 51.3 79 0.0017 21.8 8.7 99 13-144 12-122 (142)
276 TIGR03880 KaiC_arch_3 KaiC dom 51.3 95 0.0021 22.7 8.0 43 6-48 19-61 (224)
277 PRK06180 short chain dehydroge 50.8 45 0.00097 25.2 5.2 37 1-40 1-37 (277)
278 PRK00881 purH bifunctional pho 50.8 59 0.0013 27.7 6.1 38 18-66 15-52 (513)
279 PRK00090 bioD dithiobiotin syn 50.8 96 0.0021 22.6 10.4 29 10-38 7-35 (222)
280 cd01980 Chlide_reductase_Y Chl 50.6 34 0.00075 28.0 4.8 28 106-136 349-376 (416)
281 PRK13869 plasmid-partitioning 50.6 35 0.00077 27.9 4.8 38 4-41 121-160 (405)
282 PRK14098 glycogen synthase; Pr 50.5 16 0.00034 30.7 2.8 38 4-41 6-49 (489)
283 cd00861 ProRS_anticodon_short 50.5 39 0.00084 20.8 4.1 34 5-38 3-38 (94)
284 PRK13236 nitrogenase reductase 50.3 28 0.00061 27.0 4.1 28 13-40 16-43 (296)
285 TIGR00064 ftsY signal recognit 50.1 59 0.0013 25.1 5.7 38 5-42 74-111 (272)
286 cd00395 Tyr_Trp_RS_core cataly 50.0 16 0.00034 28.3 2.6 24 15-39 16-39 (273)
287 PRK05294 carB carbamoyl phosph 50.0 1.1E+02 0.0023 28.7 8.2 85 16-135 948-1039(1066)
288 PRK10499 PTS system N,N'-diace 50.0 54 0.0012 21.4 4.8 38 1-38 1-38 (106)
289 PRK08293 3-hydroxybutyryl-CoA 49.9 24 0.00052 27.2 3.6 36 1-41 1-36 (287)
290 CHL00076 chlB photochlorophyll 49.7 33 0.00071 29.1 4.6 27 106-135 373-399 (513)
291 TIGR02015 BchY chlorophyllide 49.7 30 0.00065 28.5 4.3 27 106-135 354-380 (422)
292 PF02702 KdpD: Osmosensitive K 49.7 37 0.00079 25.3 4.3 39 3-41 5-43 (211)
293 PF12695 Abhydrolase_5: Alpha/ 49.3 51 0.0011 21.6 4.8 34 7-40 2-35 (145)
294 PLN02316 synthase/transferase 49.1 17 0.00038 33.5 3.0 39 4-42 588-632 (1036)
295 PRK11914 diacylglycerol kinase 49.0 66 0.0014 25.0 6.0 41 1-41 6-49 (306)
296 COG2120 Uncharacterized protei 49.0 38 0.00083 25.5 4.5 21 19-39 26-46 (237)
297 PF00205 TPP_enzyme_M: Thiamin 48.9 42 0.00092 22.5 4.4 41 95-137 3-48 (137)
298 PRK09219 xanthine phosphoribos 48.9 45 0.00098 24.3 4.7 33 106-138 49-83 (189)
299 PRK07236 hypothetical protein; 48.8 21 0.00046 28.5 3.3 34 1-39 4-37 (386)
300 PF00448 SRP54: SRP54-type pro 48.8 49 0.0011 24.1 4.9 38 6-43 4-41 (196)
301 PRK13982 bifunctional SbtC-lik 48.7 35 0.00076 28.7 4.5 43 3-46 70-112 (475)
302 TIGR02990 ectoine_eutA ectoine 48.4 1.2E+02 0.0026 23.0 9.0 99 18-134 106-212 (239)
303 TIGR00640 acid_CoA_mut_C methy 48.3 85 0.0018 21.3 12.3 44 2-45 1-44 (132)
304 TIGR01278 DPOR_BchB light-inde 48.3 39 0.00084 28.6 4.8 27 106-135 363-389 (511)
305 TIGR01501 MthylAspMutase methy 47.8 90 0.0019 21.4 11.8 44 3-46 1-44 (134)
306 PRK09841 cryptic autophosphory 47.8 2E+02 0.0044 25.5 11.9 40 3-42 530-571 (726)
307 PRK13354 tyrosyl-tRNA syntheta 47.7 25 0.00055 28.9 3.5 33 7-40 39-74 (410)
308 cd03466 Nitrogenase_NifN_2 Nit 47.7 41 0.00088 27.7 4.8 27 106-135 371-397 (429)
309 TIGR01675 plant-AP plant acid 47.6 29 0.00062 26.2 3.6 26 17-42 122-147 (229)
310 COG3150 Predicted esterase [Ge 47.5 35 0.00076 24.7 3.7 32 109-140 61-93 (191)
311 cd02067 B12-binding B12 bindin 47.4 44 0.00095 21.8 4.2 38 3-40 50-88 (119)
312 PRK09177 xanthine-guanine phos 47.4 63 0.0014 22.6 5.1 38 93-132 19-58 (156)
313 PTZ00445 p36-lilke protein; Pr 47.4 24 0.00052 26.4 3.0 28 15-42 74-102 (219)
314 TIGR03029 EpsG chain length de 47.3 1.2E+02 0.0027 22.9 11.9 37 4-40 103-141 (274)
315 cd03115 SRP The signal recogni 47.3 84 0.0018 21.9 5.9 39 6-44 3-41 (173)
316 COG4088 Predicted nucleotide k 47.2 29 0.00062 26.2 3.4 35 5-39 3-37 (261)
317 PF01497 Peripla_BP_2: Peripla 47.2 42 0.00091 24.5 4.5 34 106-139 59-94 (238)
318 TIGR00640 acid_CoA_mut_C methy 47.0 36 0.00078 23.2 3.7 38 3-40 53-91 (132)
319 PRK06222 ferredoxin-NADP(+) re 47.0 65 0.0014 24.8 5.6 36 5-42 100-135 (281)
320 PRK13886 conjugal transfer pro 46.9 56 0.0012 24.9 5.1 43 1-43 1-43 (241)
321 TIGR01425 SRP54_euk signal rec 46.8 55 0.0012 27.2 5.3 41 5-45 102-142 (429)
322 PRK00652 lpxK tetraacyldisacch 46.6 46 0.001 26.5 4.8 37 4-40 50-88 (325)
323 PRK00771 signal recognition pa 46.6 67 0.0014 26.8 5.8 40 5-44 97-136 (437)
324 cd05017 SIS_PGI_PMI_1 The memb 46.6 81 0.0018 20.6 6.7 51 11-69 50-100 (119)
325 PF02302 PTS_IIB: PTS system, 46.5 39 0.00085 20.7 3.6 36 5-40 1-37 (90)
326 PRK05993 short chain dehydroge 46.5 42 0.0009 25.4 4.4 37 1-40 1-37 (277)
327 PF02374 ArsA_ATPase: Anion-tr 46.4 40 0.00087 26.5 4.4 39 5-43 2-41 (305)
328 PF01297 TroA: Periplasmic sol 46.3 41 0.0009 25.3 4.4 43 92-137 187-231 (256)
329 PF10657 RC-P840_PscD: Photosy 46.1 33 0.00072 23.2 3.3 40 3-42 46-85 (144)
330 cd01147 HemV-2 Metal binding p 46.1 39 0.00085 25.2 4.2 32 106-137 73-107 (262)
331 PF03853 YjeF_N: YjeF-related 45.9 29 0.00063 24.6 3.3 35 3-38 25-59 (169)
332 PF02780 Transketolase_C: Tran 45.8 45 0.00097 22.0 4.0 34 4-39 10-43 (124)
333 TIGR01369 CPSaseII_lrg carbamo 45.4 1.4E+02 0.003 27.9 8.2 84 16-134 948-1039(1050)
334 PRK10867 signal recognition pa 45.2 64 0.0014 26.8 5.5 42 5-46 102-144 (433)
335 TIGR00222 panB 3-methyl-2-oxob 45.2 44 0.00096 25.8 4.3 35 106-140 172-207 (263)
336 TIGR02329 propionate_PrpR prop 45.1 47 0.001 28.3 4.9 41 91-137 132-172 (526)
337 PRK02645 ppnK inorganic polyph 45.1 53 0.0012 25.8 4.9 39 1-39 1-40 (305)
338 PRK11259 solA N-methyltryptoph 45.0 28 0.00061 27.5 3.4 33 2-39 2-34 (376)
339 cd01965 Nitrogenase_MoFe_beta_ 44.6 47 0.001 27.3 4.7 27 106-135 370-396 (428)
340 PRK02910 light-independent pro 44.5 49 0.0011 28.1 4.9 27 106-135 361-387 (519)
341 cd06557 KPHMT-like Ketopantoat 44.4 46 0.001 25.5 4.3 49 93-141 157-206 (254)
342 PF05762 VWA_CoxE: VWA domain 44.4 72 0.0016 23.7 5.3 36 5-40 152-188 (222)
343 PRK00311 panB 3-methyl-2-oxobu 44.1 47 0.001 25.6 4.3 35 106-140 173-208 (264)
344 PRK05973 replicative DNA helic 44.1 78 0.0017 24.0 5.4 44 5-48 66-109 (237)
345 PF13614 AAA_31: AAA domain; P 44.0 56 0.0012 22.1 4.5 36 10-45 8-43 (157)
346 TIGR00355 purH phosphoribosyla 43.9 89 0.0019 26.6 6.1 37 19-66 12-48 (511)
347 PRK08674 bifunctional phosphog 43.9 1.6E+02 0.0035 23.3 11.9 54 8-69 82-135 (337)
348 cd00805 TyrRS_core catalytic c 43.8 30 0.00065 26.6 3.3 34 7-41 6-42 (269)
349 PF01266 DAO: FAD dependent ox 43.8 27 0.00058 27.0 3.1 20 21-40 12-31 (358)
350 PTZ00318 NADH dehydrogenase-li 43.8 28 0.00062 28.4 3.3 36 2-42 9-44 (424)
351 PRK04148 hypothetical protein; 43.7 29 0.00062 23.9 2.8 31 4-40 18-48 (134)
352 PRK14478 nitrogenase molybdenu 43.7 37 0.00079 28.5 4.0 25 106-133 392-416 (475)
353 TIGR02114 coaB_strep phosphopa 43.7 27 0.00059 26.1 2.9 18 21-38 29-46 (227)
354 PLN02293 adenine phosphoribosy 43.6 72 0.0016 23.2 5.0 30 106-135 61-92 (187)
355 PLN02240 UDP-glucose 4-epimera 43.6 52 0.0011 25.7 4.7 31 4-38 6-36 (352)
356 PRK11199 tyrA bifunctional cho 43.5 1.8E+02 0.0038 23.6 8.8 32 4-40 99-131 (374)
357 PF03308 ArgK: ArgK protein; 43.3 56 0.0012 25.3 4.6 40 4-43 30-69 (266)
358 COG0240 GpsA Glycerol-3-phosph 43.2 68 0.0015 25.7 5.2 34 4-42 2-35 (329)
359 COG0569 TrkA K+ transport syst 43.1 25 0.00054 26.3 2.6 22 21-42 13-34 (225)
360 PF00391 PEP-utilizers: PEP-ut 43.1 51 0.0011 20.1 3.7 31 106-136 29-61 (80)
361 PRK08265 short chain dehydroge 43.0 65 0.0014 24.1 5.0 33 4-39 6-38 (261)
362 cd00532 MGS-like MGS-like doma 42.7 59 0.0013 21.2 4.2 85 16-134 10-105 (112)
363 PF07755 DUF1611: Protein of u 42.7 54 0.0012 25.9 4.5 39 4-42 113-152 (301)
364 PLN00016 RNA-binding protein; 42.7 43 0.00093 26.8 4.1 36 4-41 53-90 (378)
365 COG1618 Predicted nucleotide k 42.7 82 0.0018 22.8 5.0 57 3-68 5-61 (179)
366 PRK14619 NAD(P)H-dependent gly 42.5 40 0.00087 26.3 3.9 33 3-40 4-36 (308)
367 TIGR00176 mobB molybdopterin-g 42.4 69 0.0015 22.3 4.7 35 6-40 2-36 (155)
368 PRK03094 hypothetical protein; 42.3 28 0.00061 21.7 2.3 21 20-40 10-30 (80)
369 cd01452 VWA_26S_proteasome_sub 42.2 83 0.0018 22.9 5.2 34 6-39 111-144 (187)
370 PRK06718 precorrin-2 dehydroge 42.2 45 0.00098 24.4 3.9 34 3-41 10-43 (202)
371 PRK14974 cell division protein 42.1 90 0.002 25.0 5.8 38 5-42 142-179 (336)
372 cd01143 YvrC Periplasmic bindi 42.1 62 0.0013 22.8 4.6 32 106-137 59-91 (195)
373 PF03796 DnaB_C: DnaB-like hel 42.0 1E+02 0.0022 23.2 6.0 129 6-138 22-180 (259)
374 cd05014 SIS_Kpsf KpsF-like pro 41.9 72 0.0016 20.9 4.6 35 9-43 52-86 (128)
375 cd06533 Glyco_transf_WecG_TagA 41.8 1.2E+02 0.0027 21.4 9.5 92 19-134 34-130 (171)
376 PF03698 UPF0180: Uncharacteri 41.8 28 0.0006 21.7 2.3 22 20-41 10-31 (80)
377 COG1090 Predicted nucleoside-d 41.7 30 0.00065 27.1 2.9 22 21-42 12-33 (297)
378 PRK01372 ddl D-alanine--D-alan 41.5 71 0.0015 24.6 5.1 42 1-42 2-47 (304)
379 PRK09490 metH B12-dependent me 41.5 2.3E+02 0.0051 27.1 8.9 44 3-46 751-794 (1229)
380 TIGR03325 BphB_TodD cis-2,3-di 41.3 73 0.0016 23.7 5.1 36 1-39 1-37 (262)
381 cd00806 TrpRS_core catalytic c 40.9 32 0.00069 26.7 3.0 27 15-41 15-41 (280)
382 TIGR03018 pepcterm_TyrKin exop 40.8 88 0.0019 22.7 5.3 39 4-42 35-76 (207)
383 PRK09361 radB DNA repair and r 40.5 88 0.0019 22.9 5.3 35 6-40 26-60 (225)
384 cd01976 Nitrogenase_MoFe_alpha 40.5 44 0.00096 27.5 3.9 28 106-136 368-395 (421)
385 PF08357 SEFIR: SEFIR domain; 40.3 38 0.00083 23.1 3.1 30 7-36 5-35 (150)
386 PF03205 MobB: Molybdopterin g 40.3 76 0.0016 21.7 4.6 35 5-39 2-36 (140)
387 PF01075 Glyco_transf_9: Glyco 40.1 1.5E+02 0.0032 21.8 7.3 40 3-42 105-148 (247)
388 PRK09186 flagellin modificatio 40.0 76 0.0017 23.3 4.9 34 3-39 3-36 (256)
389 cd01017 AdcA Metal binding pro 40.0 91 0.002 23.9 5.4 43 92-137 208-252 (282)
390 cd03809 GT1_mtfB_like This fam 40.0 30 0.00064 26.5 2.8 28 15-42 16-43 (365)
391 cd05008 SIS_GlmS_GlmD_1 SIS (S 39.9 93 0.002 20.2 4.9 33 11-43 53-85 (126)
392 COG2084 MmsB 3-hydroxyisobutyr 39.8 56 0.0012 25.6 4.2 32 5-41 2-33 (286)
393 TIGR00075 hypD hydrogenase exp 39.8 2.1E+02 0.0045 23.4 9.8 64 90-157 178-247 (369)
394 PRK06603 enoyl-(acyl carrier p 39.6 72 0.0016 23.9 4.8 34 4-38 8-41 (260)
395 PRK12747 short chain dehydroge 39.6 78 0.0017 23.3 5.0 33 3-38 3-35 (252)
396 PF01316 Arg_repressor: Argini 39.5 17 0.00037 22.0 1.1 19 20-38 22-40 (70)
397 PF13407 Peripla_BP_4: Peripla 39.3 1.1E+02 0.0023 22.5 5.6 32 106-137 54-89 (257)
398 PRK14618 NAD(P)H-dependent gly 39.3 49 0.0011 26.0 3.9 34 3-41 4-37 (328)
399 TIGR01285 nifN nitrogenase mol 39.1 61 0.0013 26.8 4.6 35 92-135 364-398 (432)
400 PF13507 GATase_5: CobB/CobQ-l 39.0 54 0.0012 25.2 4.0 58 3-71 1-58 (259)
401 TIGR03026 NDP-sugDHase nucleot 39.0 56 0.0012 26.6 4.3 31 5-40 2-32 (411)
402 PRK08057 cobalt-precorrin-6x r 39.0 72 0.0016 24.3 4.6 34 3-41 2-35 (248)
403 PRK08849 2-octaprenyl-3-methyl 38.8 37 0.00081 27.2 3.2 34 1-39 1-34 (384)
404 cd01124 KaiC KaiC is a circadi 38.8 1.3E+02 0.0028 21.0 5.8 42 6-47 2-43 (187)
405 PF01591 6PF2K: 6-phosphofruct 38.8 1.7E+02 0.0036 22.0 9.4 117 4-141 13-135 (222)
406 PF07881 Fucose_iso_N1: L-fuco 38.8 1.5E+02 0.0032 21.4 5.8 71 58-133 4-78 (171)
407 cd02040 NifH NifH gene encodes 38.7 82 0.0018 23.6 5.0 37 5-41 3-39 (270)
408 COG0552 FtsY Signal recognitio 38.5 1.2E+02 0.0025 24.5 5.8 43 5-47 141-183 (340)
409 cd01075 NAD_bind_Leu_Phe_Val_D 38.5 53 0.0011 24.0 3.7 30 4-38 29-58 (200)
410 COG1233 Phytoene dehydrogenase 38.5 54 0.0012 27.5 4.2 33 1-38 1-33 (487)
411 PRK13185 chlL protochlorophyll 38.5 83 0.0018 23.8 5.0 36 5-40 4-39 (270)
412 PRK07251 pyridine nucleotide-d 38.4 44 0.00095 27.4 3.6 34 1-39 1-34 (438)
413 TIGR01689 EcbF-BcbF capsule bi 38.2 55 0.0012 22.2 3.5 25 19-43 28-52 (126)
414 cd01421 IMPCH Inosine monophos 38.1 66 0.0014 23.5 4.1 38 18-66 11-48 (187)
415 cd01974 Nitrogenase_MoFe_beta 38.1 75 0.0016 26.2 5.0 27 106-135 376-402 (435)
416 COG3046 Uncharacterized protei 38.0 44 0.00096 27.7 3.4 26 16-41 51-76 (505)
417 KOG1615 Phosphoserine phosphat 37.9 49 0.0011 24.6 3.4 40 89-131 89-129 (227)
418 TIGR01286 nifK nitrogenase mol 37.9 64 0.0014 27.4 4.6 27 106-135 436-462 (515)
419 cd03109 DTBS Dethiobiotin synt 37.8 83 0.0018 21.2 4.4 35 7-41 3-37 (134)
420 TIGR03499 FlhF flagellar biosy 37.8 1.2E+02 0.0025 23.5 5.7 39 5-43 196-236 (282)
421 PRK08309 short chain dehydroge 37.8 75 0.0016 22.7 4.4 34 106-139 74-115 (177)
422 PRK06067 flagellar accessory p 37.8 1.6E+02 0.0034 21.8 6.3 44 5-48 27-70 (234)
423 PF06418 CTP_synth_N: CTP synt 37.8 60 0.0013 25.2 4.0 38 5-42 2-42 (276)
424 COG1028 FabG Dehydrogenases wi 37.8 91 0.002 22.9 5.1 36 3-41 4-39 (251)
425 PF01695 IstB_IS21: IstB-like 37.8 73 0.0016 22.7 4.3 44 4-47 48-91 (178)
426 PF09334 tRNA-synt_1g: tRNA sy 37.4 30 0.00064 28.3 2.5 27 15-41 17-46 (391)
427 PLN03050 pyridoxine (pyridoxam 37.4 40 0.00087 25.7 3.0 34 4-40 61-96 (246)
428 PRK00455 pyrE orotate phosphor 37.2 97 0.0021 22.5 5.0 31 106-136 63-95 (202)
429 TIGR02622 CDP_4_6_dhtase CDP-g 37.2 77 0.0017 24.9 4.8 19 21-39 18-36 (349)
430 COG1435 Tdk Thymidine kinase [ 37.2 1.7E+02 0.0037 21.7 8.9 41 3-43 3-44 (201)
431 TIGR03837 efp_adjacent_2 conse 37.1 57 0.0012 26.5 3.9 30 12-41 9-39 (371)
432 cd00550 ArsA_ATPase Oxyanion-t 37.1 71 0.0015 24.2 4.4 41 6-47 3-43 (254)
433 PLN02331 phosphoribosylglycina 37.0 96 0.0021 22.9 4.9 45 92-136 12-57 (207)
434 cd05013 SIS_RpiR RpiR-like pro 36.9 87 0.0019 20.4 4.4 34 9-42 65-98 (139)
435 PRK10125 putative glycosyl tra 36.8 69 0.0015 26.1 4.5 37 5-41 2-40 (405)
436 PRK05708 2-dehydropantoate 2-r 36.7 37 0.00081 26.5 2.9 33 3-40 2-34 (305)
437 PRK12726 flagellar biosynthesi 36.7 1.1E+02 0.0025 25.2 5.6 39 6-44 209-247 (407)
438 PRK06835 DNA replication prote 36.5 79 0.0017 25.2 4.7 43 4-46 184-226 (329)
439 PLN02424 ketopantoate hydroxym 36.5 67 0.0015 25.7 4.2 35 106-140 194-229 (332)
440 PF01738 DLH: Dienelactone hyd 36.3 83 0.0018 22.8 4.6 32 5-36 15-46 (218)
441 PRK05912 tyrosyl-tRNA syntheta 36.3 42 0.00091 27.6 3.2 33 7-40 39-74 (408)
442 PRK12458 glutathione synthetas 36.2 48 0.0011 26.4 3.5 27 16-42 9-35 (338)
443 TIGR00725 conserved hypothetic 36.2 67 0.0015 22.6 3.8 33 5-39 3-37 (159)
444 TIGR00730 conserved hypothetic 36.2 80 0.0017 22.7 4.3 32 5-36 2-37 (178)
445 COG0504 PyrG CTP synthase (UTP 36.1 82 0.0018 26.8 4.7 38 5-42 2-42 (533)
446 PRK12829 short chain dehydroge 36.1 91 0.002 23.0 4.8 31 7-40 14-44 (264)
447 COG2179 Predicted hydrolase of 35.9 1.1E+02 0.0024 22.1 4.8 44 89-135 47-91 (175)
448 COG0543 UbiB 2-polyprenylpheno 35.9 58 0.0013 24.7 3.7 27 16-42 118-146 (252)
449 PRK07530 3-hydroxybutyryl-CoA 35.7 42 0.00091 25.8 3.0 36 1-41 2-37 (292)
450 PF01494 FAD_binding_3: FAD bi 35.7 42 0.00092 25.8 3.1 19 21-39 14-32 (356)
451 PF02606 LpxK: Tetraacyldisacc 35.7 57 0.0012 26.0 3.7 33 9-41 43-75 (326)
452 PRK11889 flhF flagellar biosyn 35.6 1.3E+02 0.0029 25.0 5.8 40 4-43 242-281 (436)
453 cd00860 ThrRS_anticodon ThrRS 35.5 1E+02 0.0022 18.6 4.3 34 5-39 3-36 (91)
454 PRK13011 formyltetrahydrofolat 35.5 97 0.0021 24.2 4.9 43 91-135 101-144 (286)
455 PRK10490 sensor protein KdpD; 35.4 62 0.0013 29.5 4.3 36 3-38 24-59 (895)
456 PF10093 DUF2331: Uncharacteri 35.4 57 0.0012 26.6 3.7 30 12-41 9-39 (374)
457 TIGR03371 cellulose_yhjQ cellu 35.4 74 0.0016 23.4 4.2 32 11-42 10-41 (246)
458 TIGR03088 stp2 sugar transfera 35.3 2.2E+02 0.0047 22.3 11.0 26 15-40 15-40 (374)
459 TIGR03087 stp1 sugar transfera 35.1 37 0.00081 27.2 2.7 31 10-41 9-40 (397)
460 PRK14489 putative bifunctional 35.1 1.1E+02 0.0023 24.7 5.3 36 4-39 206-241 (366)
461 cd06559 Endonuclease_V Endonuc 35.0 41 0.00089 24.9 2.7 42 93-138 83-131 (208)
462 TIGR03127 RuMP_HxlB 6-phospho 34.9 1.1E+02 0.0023 21.6 4.8 35 9-43 77-111 (179)
463 cd01122 GP4d_helicase GP4d_hel 34.9 1.3E+02 0.0028 22.7 5.5 42 5-46 32-74 (271)
464 PRK08862 short chain dehydroge 34.9 90 0.0019 23.0 4.6 33 4-39 5-37 (227)
465 COG2085 Predicted dinucleotide 34.9 53 0.0012 24.5 3.2 22 21-42 14-35 (211)
466 PRK01906 tetraacyldisaccharide 34.8 64 0.0014 25.8 3.9 33 9-41 64-96 (338)
467 PRK05632 phosphate acetyltrans 34.8 3.2E+02 0.007 24.1 12.2 35 5-39 4-39 (684)
468 PF03721 UDPG_MGDP_dh_N: UDP-g 34.8 50 0.0011 23.8 3.1 32 5-41 2-33 (185)
469 cd02037 MRP-like MRP (Multiple 34.8 62 0.0013 22.5 3.5 32 10-41 7-38 (169)
470 PRK01077 cobyrinic acid a,c-di 34.8 73 0.0016 26.5 4.4 40 1-40 1-41 (451)
471 PHA02518 ParA-like protein; Pr 34.7 65 0.0014 23.0 3.8 32 11-42 9-40 (211)
472 COG1440 CelA Phosphotransferas 34.7 1.2E+02 0.0026 19.8 4.5 37 4-40 2-38 (102)
473 cd03113 CTGs CTP synthetase (C 34.6 94 0.002 23.9 4.5 28 15-42 14-41 (255)
474 cd01916 ACS_1 Acetyl-CoA synth 34.6 46 0.001 29.6 3.3 34 106-139 264-299 (731)
475 PRK08939 primosomal protein Dn 34.5 81 0.0018 24.8 4.4 42 5-46 158-199 (306)
476 COG1763 MobB Molybdopterin-gua 34.5 1.1E+02 0.0023 21.8 4.6 35 6-40 5-39 (161)
477 PRK13933 stationary phase surv 34.4 1E+02 0.0023 23.6 4.8 39 5-45 2-40 (253)
478 TIGR01744 XPRTase xanthine pho 34.4 1E+02 0.0022 22.4 4.7 32 106-137 49-82 (191)
479 PF00919 UPF0004: Uncharacteri 34.4 96 0.0021 19.9 4.1 31 5-35 1-31 (98)
480 PRK08690 enoyl-(acyl carrier p 34.4 66 0.0014 24.1 3.9 32 4-37 6-38 (261)
481 PRK08850 2-octaprenyl-6-methox 34.3 45 0.00098 26.9 3.1 34 1-39 2-35 (405)
482 TIGR01470 cysG_Nterm siroheme 34.0 72 0.0016 23.4 3.9 34 4-42 10-43 (205)
483 PF00289 CPSase_L_chain: Carba 34.0 24 0.00053 23.2 1.2 30 9-40 77-106 (110)
484 PF07972 Flavodoxin_NdrI: NrdI 33.9 34 0.00074 23.1 1.9 43 89-133 57-106 (122)
485 KOG0332 ATP-dependent RNA heli 33.8 40 0.00087 27.7 2.6 23 20-42 343-365 (477)
486 PRK15411 rcsA colanic acid cap 33.7 1.2E+02 0.0025 22.2 5.0 42 93-137 36-86 (207)
487 cd01965 Nitrogenase_MoFe_beta_ 33.7 77 0.0017 26.0 4.4 35 106-140 222-258 (428)
488 PRK00683 murD UDP-N-acetylmura 33.7 55 0.0012 26.7 3.5 34 1-39 1-34 (418)
489 TIGR01680 Veg_Stor_Prot vegeta 33.7 74 0.0016 24.8 3.9 27 16-42 146-172 (275)
490 TIGR02069 cyanophycinase cyano 33.7 1.3E+02 0.0028 22.9 5.3 37 3-39 28-65 (250)
491 TIGR02082 metH 5-methyltetrahy 33.7 3.9E+02 0.0084 25.6 9.1 44 3-46 732-775 (1178)
492 TIGR01283 nifE nitrogenase mol 33.6 80 0.0017 26.2 4.5 27 106-135 394-420 (456)
493 PF02571 CbiJ: Precorrin-6x re 33.4 84 0.0018 24.0 4.2 33 4-42 1-33 (249)
494 COG2894 MinD Septum formation 33.4 95 0.0021 23.7 4.3 39 4-42 2-42 (272)
495 PF10727 Rossmann-like: Rossma 33.4 72 0.0016 21.6 3.5 35 3-42 10-44 (127)
496 COG1663 LpxK Tetraacyldisaccha 33.4 70 0.0015 25.7 3.9 32 9-40 55-86 (336)
497 PRK06182 short chain dehydroge 33.2 1.1E+02 0.0024 22.9 5.0 33 5-40 4-36 (273)
498 PRK09004 FMN-binding protein M 33.1 90 0.0019 21.5 4.0 37 1-39 1-38 (146)
499 PF07015 VirC1: VirC1 protein; 33.1 83 0.0018 23.8 4.0 34 12-45 11-44 (231)
500 cd06267 PBP1_LacI_sugar_bindin 33.1 1.4E+02 0.003 21.6 5.4 33 106-138 54-88 (264)
No 1
>PLN02562 UDP-glycosyltransferase
Probab=99.94 E-value=3e-25 Score=180.64 Aligned_cols=146 Identities=26% Similarity=0.569 Sum_probs=115.8
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCCCCCcCchhHHHHH
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGMEPWEDRNELGNKL 82 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 82 (166)
++||+++|+|++||++||++||+.|++||++||++++..+..++.+... ..++|++..+|++.+++. ..++..+.
T Consensus 6 ~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~----~~~~i~~v~lp~g~~~~~-~~~~~~l~ 80 (448)
T PLN02562 6 RPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLD----PKLGITFMSISDGQDDDP-PRDFFSIE 80 (448)
T ss_pred CcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccC----CCCCEEEEECCCCCCCCc-cccHHHHH
Confidence 4699999999999999999999999999999999999987655543211 113699999998765321 12343444
Q ss_pred HHHHhhccHHHHHHHHHHhhcCCCCccEEEecCccchHHHHHHHhCCceEEEccccHHHHHHHhccchhhhCC
Q 043556 83 KKILQVMPGNLEELIEEINEKEDEKIDCFIADAYMGWTMRIAEKMKLRRGVVWPSSAASVALCFRIPKLIDDG 155 (166)
Q Consensus 83 ~~~~~~~~~~~~~ll~~l~~~~~~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~l~~~~ 155 (166)
..+...+.+.++++++++... .+++|||+|.+++|+.++|+++|||++.||+++++.++.++|++.+...+
T Consensus 81 ~a~~~~~~~~l~~ll~~l~~~--~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~ 151 (448)
T PLN02562 81 NSMENTMPPQLERLLHKLDED--GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTG 151 (448)
T ss_pred HHHHHhchHHHHHHHHHhcCC--CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcc
Confidence 455546788899999887431 35699999999999999999999999999999999999999887654443
No 2
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.93 E-value=2.1e-25 Score=181.45 Aligned_cols=145 Identities=20% Similarity=0.338 Sum_probs=114.0
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCCCCC-cCchhHHHH
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGMEPW-EDRNELGNK 81 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~-~~~~~~~~~ 81 (166)
+.||+++|+|++||++||++||+.|++||+.|||+++..+.... . ...++|++..+|+++|++ .+..+...+
T Consensus 7 ~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~--~-----~~~~~i~~~~ip~glp~~~~~~~~~~~~ 79 (451)
T PLN02410 7 RRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSP--S-----DDFTDFQFVTIPESLPESDFKNLGPIEF 79 (451)
T ss_pred CCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCccccccc--c-----cCCCCeEEEeCCCCCCcccccccCHHHH
Confidence 57999999999999999999999999999999999998654211 0 111369999999888763 122223345
Q ss_pred HHHHHhhccHHHHHHHHHHhhcCCCCccEEEecCccchHHHHHHHhCCceEEEccccHHHHHHHhccchhhhC
Q 043556 82 LKKILQVMPGNLEELIEEINEKEDEKIDCFIADAYMGWTMRIAEKMKLRRGVVWPSSAASVALCFRIPKLIDD 154 (166)
Q Consensus 82 ~~~~~~~~~~~~~~ll~~l~~~~~~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~l~~~ 154 (166)
+..+.+.+...++++++++..+...+++|||+|++++|+.++|+++|||++.||+++++.++++++++.+.+.
T Consensus 80 ~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~ 152 (451)
T PLN02410 80 LHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYAN 152 (451)
T ss_pred HHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhc
Confidence 5555556777888888876432224679999999999999999999999999999999999999988766543
No 3
>PLN02173 UDP-glucosyl transferase family protein
Probab=99.93 E-value=7.5e-25 Score=177.85 Aligned_cols=138 Identities=21% Similarity=0.443 Sum_probs=109.9
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCCCCC--cCchhHHH
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGMEPW--EDRNELGN 80 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~--~~~~~~~~ 80 (166)
+.||+++|+|++||++||++||+.|+++|+.|||++++.....+... ..++|++..+|+++|++ ....+...
T Consensus 5 ~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~------~~~~i~~~~ipdglp~~~~~~~~~~~~ 78 (449)
T PLN02173 5 RGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD------PSSPISIATISDGYDQGGFSSAGSVPE 78 (449)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC------CCCCEEEEEcCCCCCCcccccccCHHH
Confidence 47999999999999999999999999999999999998765443221 11369999999888763 22223445
Q ss_pred HHHHHHhhccHHHHHHHHHHhhcCCCCccEEEecCccchHHHHHHHhCCceEEEccccHHHHHHHhc
Q 043556 81 KLKKILQVMPGNLEELIEEINEKEDEKIDCFIADAYMGWTMRIAEKMKLRRGVVWPSSAASVALCFR 147 (166)
Q Consensus 81 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~ 147 (166)
++..+.+.+.++++++++++..+ ..+++|||+|.+++|+.++|+++|||++.||+++++.++++++
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~-~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~ 144 (449)
T PLN02173 79 YLQNFKTFGSKTVADIIRKHQST-DNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYL 144 (449)
T ss_pred HHHHHHHhhhHHHHHHHHHhhcc-CCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHh
Confidence 66666656788899999876432 1345999999999999999999999999999999988877664
No 4
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=99.93 E-value=1.2e-24 Score=177.02 Aligned_cols=145 Identities=26% Similarity=0.484 Sum_probs=113.5
Q ss_pred CCCCEEEEEcCCCCCChHHHHHHHHHHHH-CCCEEEEEeCCcc-hhHHHhhhccCCCCCCCeeeeecCCCCCCCc-C-ch
Q 043556 1 MSNPHVLVIPAPAQGHVIPLLEFSQCLAN-HGVRVTFVNSEYN-HQRVLKSLEGKNNLEEKIRLVSIPDGMEPWE-D-RN 76 (166)
Q Consensus 1 ~~~~~il~~~~p~~GH~~P~l~la~~L~~-rGh~Vt~~t~~~~-~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~-~-~~ 76 (166)
|++.||+++|+|++||++||++||+.|++ +|+.|||+++... .....+. ....+++++..++++++++. . ..
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~----~~~~~~i~~~~i~dglp~g~~~~~~ 76 (455)
T PLN02152 1 MAPPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPN----HNNVENLSFLTFSDGFDDGVISNTD 76 (455)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhcc----CCCCCCEEEEEcCCCCCCccccccc
Confidence 78899999999999999999999999996 7999999999853 2222111 01113699999998887642 1 23
Q ss_pred hHHHHHHHHHhhccHHHHHHHHHHhhcCCCCccEEEecCccchHHHHHHHhCCceEEEccccHHHHHHHhccch
Q 043556 77 ELGNKLKKILQVMPGNLEELIEEINEKEDEKIDCFIADAYMGWTMRIAEKMKLRRGVVWPSSAASVALCFRIPK 150 (166)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~ 150 (166)
+....+..+...+.++++++++++... ..+++|||+|.+++|+.++|+++|||++.||+++++.++++++++.
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~l~~l~~~-~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~ 149 (455)
T PLN02152 77 DVQNRLVNFERNGDKALSDFIEANLNG-DSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYST 149 (455)
T ss_pred cHHHHHHHHHHhccHHHHHHHHHhhcc-CCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhc
Confidence 344445555557888999999886432 1457999999999999999999999999999999999999988753
No 5
>PLN02448 UDP-glycosyltransferase family protein
Probab=99.92 E-value=2.8e-24 Score=175.65 Aligned_cols=142 Identities=20% Similarity=0.439 Sum_probs=114.5
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHC--CCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCCCCCc-CchhHH
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANH--GVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGMEPWE-DRNELG 79 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~r--Gh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~-~~~~~~ 79 (166)
+.||+++|+|++||++||++||++|++| ||+||+++++.+...+++.. ..++++|..+|++.+++. ...+..
T Consensus 10 ~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~-----~~~gi~fv~lp~~~p~~~~~~~~~~ 84 (459)
T PLN02448 10 SCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDP-----KPDNIRFATIPNVIPSELVRAADFP 84 (459)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccC-----CCCCEEEEECCCCCCCccccccCHH
Confidence 5899999999999999999999999999 99999999998876665421 124799999987665432 122344
Q ss_pred HHHHHHHhhccHHHHHHHHHHhhcCCCCccEEEecCccchHHHHHHHhCCceEEEccccHHHHHHHhccchhhh
Q 043556 80 NKLKKILQVMPGNLEELIEEINEKEDEKIDCFIADAYMGWTMRIAEKMKLRRGVVWPSSAASVALCFRIPKLID 153 (166)
Q Consensus 80 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~l~~ 153 (166)
.++..+.+.+.+.++++++++. .++||||+|.++.|+.++|+++|||++.|+++++..++.++|++.+..
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~----~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~ 154 (459)
T PLN02448 85 GFLEAVMTKMEAPFEQLLDRLE----PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQ 154 (459)
T ss_pred HHHHHHHHHhHHHHHHHHHhcC----CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhh
Confidence 4455555456677888887753 468999999999999999999999999999999999999999876544
No 6
>PLN02555 limonoid glucosyltransferase
Probab=99.92 E-value=2.7e-24 Score=175.86 Aligned_cols=147 Identities=25% Similarity=0.465 Sum_probs=111.9
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHh--hhccC--CC-CCCCeeeeecCCCCCCCcC-ch
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLK--SLEGK--NN-LEEKIRLVSIPDGMEPWED-RN 76 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~--~~~~~--~~-~~~~i~~~~l~~~~~~~~~-~~ 76 (166)
++||+++|+|++||++||++||+.|+.||..||+++++.....+.+ ..... .. ....++|..+|+++|++.+ ..
T Consensus 7 ~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~~~~~~~ 86 (480)
T PLN02555 7 LVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAEDDPRRQ 86 (480)
T ss_pred CCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCCCccccc
Confidence 5899999999999999999999999999999999999976554432 11000 00 0123677777887765421 22
Q ss_pred hHHHHHHHHHhhccHHHHHHHHHHhhcCCCCccEEEecCccchHHHHHHHhCCceEEEccccHHHHHHHhccch
Q 043556 77 ELGNKLKKILQVMPGNLEELIEEINEKEDEKIDCFIADAYMGWTMRIAEKMKLRRGVVWPSSAASVALCFRIPK 150 (166)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~ 150 (166)
++..++..+...+.++++++++++..+ ..+++|||+|.+++|+.++|+++|||++.||+++++.+++++|++.
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~~ 159 (480)
T PLN02555 87 DLDLYLPQLELVGKREIPNLVKRYAEQ-GRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYYH 159 (480)
T ss_pred CHHHHHHHHHHhhhHHHHHHHHHHhcc-CCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHhh
Confidence 344455555556778899999876432 1456999999999999999999999999999999999999999853
No 7
>PLN00164 glucosyltransferase; Provisional
Probab=99.92 E-value=3.7e-24 Score=175.52 Aligned_cols=146 Identities=20% Similarity=0.325 Sum_probs=110.8
Q ss_pred CCCCEEEEEcCCCCCChHHHHHHHHHHHHCC----CEEEEEeCCcchh----HHHhhhccCCCCCCCeeeeecCCCCCCC
Q 043556 1 MSNPHVLVIPAPAQGHVIPLLEFSQCLANHG----VRVTFVNSEYNHQ----RVLKSLEGKNNLEEKIRLVSIPDGMEPW 72 (166)
Q Consensus 1 ~~~~~il~~~~p~~GH~~P~l~la~~L~~rG----h~Vt~~t~~~~~~----~~~~~~~~~~~~~~~i~~~~l~~~~~~~ 72 (166)
|+++||+++|+|++||++||++||+.|+.|| +.|||+++..... .+.+..........+|++..+|++..+.
T Consensus 1 ~~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~ 80 (480)
T PLN00164 1 MAAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPT 80 (480)
T ss_pred CCCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCC
Confidence 8899999999999999999999999999997 8999999875421 2222211100111258999998764221
Q ss_pred cCchhHHHHHHHHHhhccHHHHHHHHHHhhcCCCCccEEEecCccchHHHHHHHhCCceEEEccccHHHHHHHhccchh
Q 043556 73 EDRNELGNKLKKILQVMPGNLEELIEEINEKEDEKIDCFIADAYMGWTMRIAEKMKLRRGVVWPSSAASVALCFRIPKL 151 (166)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~l 151 (166)
...+...++..+.+.+.++++++++++. .+++|||+|.+++|+.++|+++|||++.||+++++.+++++|+|.+
T Consensus 81 -~~e~~~~~~~~~~~~~~~~l~~~L~~l~----~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~ 154 (480)
T PLN00164 81 -DAAGVEEFISRYIQLHAPHVRAAIAGLS----CPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPAL 154 (480)
T ss_pred -ccccHHHHHHHHHHhhhHHHHHHHHhcC----CCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhh
Confidence 1122334444455567778888887652 4679999999999999999999999999999999999999999864
No 8
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.92 E-value=6.3e-24 Score=173.88 Aligned_cols=141 Identities=26% Similarity=0.382 Sum_probs=104.0
Q ss_pred CCCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecC--C--CCCCCc-Cch
Q 043556 2 SNPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIP--D--GMEPWE-DRN 76 (166)
Q Consensus 2 ~~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~--~--~~~~~~-~~~ 76 (166)
+++||+++|+|++||++||++||+.|+.||++|||++++.+..++.+... ..+++++..+| + ++|++. ...
T Consensus 8 ~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~----~~~~i~~~~lp~P~~~~lPdG~~~~~ 83 (477)
T PLN02863 8 AGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLS----KHPSIETLVLPFPSHPSIPSGVENVK 83 (477)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcc----cCCCeeEEeCCCCCcCCCCCCCcChh
Confidence 36899999999999999999999999999999999999987766543211 11356765543 1 333321 111
Q ss_pred ----hHHHHHHHHHhhccHHHHHHHHHHhhcCCCCccEEEecCccchHHHHHHHhCCceEEEccccHHHHHHHhccch
Q 043556 77 ----ELGNKLKKILQVMPGNLEELIEEINEKEDEKIDCFIADAYMGWTMRIAEKMKLRRGVVWPSSAASVALCFRIPK 150 (166)
Q Consensus 77 ----~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~ 150 (166)
+....+......+.+++++++++. ..+++|||+|.+++|+.++|+++|||++.||+++++.++++++++.
T Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~l~~~----~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~ 157 (477)
T PLN02863 84 DLPPSGFPLMIHALGELYAPLLSWFRSH----PSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWR 157 (477)
T ss_pred hcchhhHHHHHHHHHHhHHHHHHHHHhC----CCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhh
Confidence 111222223334556677777653 1467999999999999999999999999999999999999998764
No 9
>PLN02670 transferase, transferring glycosyl groups
Probab=99.92 E-value=8e-24 Score=172.69 Aligned_cols=144 Identities=28% Similarity=0.432 Sum_probs=108.3
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecC----CCCCCCc-Cchh
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIP----DGMEPWE-DRNE 77 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~----~~~~~~~-~~~~ 77 (166)
+.||+++|+|++||++||++||+.|++||++||+++++.+..++.... ....++|++..+| +++|++. ...+
T Consensus 6 ~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~---~~~~~~i~~~~lp~p~~dglp~~~~~~~~ 82 (472)
T PLN02670 6 VLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIP---SQLSSSITLVSFPLPSVPGLPSSAESSTD 82 (472)
T ss_pred CcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhcc---ccCCCCeeEEECCCCccCCCCCCcccccc
Confidence 579999999999999999999999999999999999998765543210 0112358888887 5665432 1122
Q ss_pred H----HHHHHHHHhhccHHHHHHHHHHhhcCCCCccEEEecCccchHHHHHHHhCCceEEEccccHHHHHHHhccchhhh
Q 043556 78 L----GNKLKKILQVMPGNLEELIEEINEKEDEKIDCFIADAYMGWTMRIAEKMKLRRGVVWPSSAASVALCFRIPKLID 153 (166)
Q Consensus 78 ~----~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~l~~ 153 (166)
. ...+....+.+.+.+++++++ .+++|||+|.+++|+.++|+++|||++.|++++++.++++++.+.+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~ 156 (472)
T PLN02670 83 VPYTKQQLLKKAFDLLEPPLTTFLET------SKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLME 156 (472)
T ss_pred cchhhHHHHHHHHHHhHHHHHHHHHh------CCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhh
Confidence 2 123333444566777777765 367999999999999999999999999999999999999876654444
Q ss_pred CC
Q 043556 154 DG 155 (166)
Q Consensus 154 ~~ 155 (166)
.|
T Consensus 157 ~~ 158 (472)
T PLN02670 157 GG 158 (472)
T ss_pred cc
Confidence 33
No 10
>PLN02210 UDP-glucosyl transferase
Probab=99.91 E-value=2e-23 Score=170.23 Aligned_cols=136 Identities=21% Similarity=0.431 Sum_probs=105.5
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHH--HHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCCCCCcCchhHHH
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQC--LANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGMEPWEDRNELGN 80 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~--L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~ 80 (166)
+.||+++|+|++||++|+++||++ |++||++|||++++.+...+.+.. .....+++..+|+++|++.. .+...
T Consensus 8 ~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~----~~~~~~~~~~~~~glp~~~~-~~~~~ 82 (456)
T PLN02210 8 ETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVE----KPRRPVDLVFFSDGLPKDDP-RAPET 82 (456)
T ss_pred CCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhcccc----CCCCceEEEECCCCCCCCcc-cCHHH
Confidence 579999999999999999999999 569999999999998765542211 11235777777877765421 22334
Q ss_pred HHHHHHhhccHHHHHHHHHHhhcCCCCccEEEecCccchHHHHHHHhCCceEEEccccHHHHHHHhccc
Q 043556 81 KLKKILQVMPGNLEELIEEINEKEDEKIDCFIADAYMGWTMRIAEKMKLRRGVVWPSSAASVALCFRIP 149 (166)
Q Consensus 81 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~ 149 (166)
++..+.+.+.+.+++++++ .++||||+|.+++|+.++|+++|||.+.||+++++.++.+++++
T Consensus 83 ~~~~~~~~~~~~l~~~l~~------~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~ 145 (456)
T PLN02210 83 LLKSLNKVGAKNLSKIIEE------KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYY 145 (456)
T ss_pred HHHHHHHhhhHHHHHHHhc------CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhh
Confidence 4444444555566666654 47999999999999999999999999999999999999988764
No 11
>PLN02534 UDP-glycosyltransferase
Probab=99.91 E-value=3e-23 Score=170.05 Aligned_cols=142 Identities=28% Similarity=0.474 Sum_probs=103.6
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecC-----CCCCCCcC-ch
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIP-----DGMEPWED-RN 76 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~-----~~~~~~~~-~~ 76 (166)
+.||+++|+|++||++||++||+.|++||+.|||++++.+...+.+...........|+|+.+| +++|++.+ ..
T Consensus 8 ~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~~~ 87 (491)
T PLN02534 8 QLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCENLD 87 (491)
T ss_pred CCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCccccc
Confidence 4799999999999999999999999999999999999987655543221100111248888887 56765421 11
Q ss_pred h--HHHHHHHH---HhhccHHHHHHHHHHhhcCCCCccEEEecCccchHHHHHHHhCCceEEEccccHHHHHHHhcc
Q 043556 77 E--LGNKLKKI---LQVMPGNLEELIEEINEKEDEKIDCFIADAYMGWTMRIAEKMKLRRGVVWPSSAASVALCFRI 148 (166)
Q Consensus 77 ~--~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~ 148 (166)
+ ...+...+ ...+.+.+++++++. ..+++|||+|.+++|+.++|+++|||++.||+++++.+++++++
T Consensus 88 ~~~~~~~~~~~~~~~~~l~~~l~~lL~~~----~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~ 160 (491)
T PLN02534 88 TLPSRDLLRKFYDAVDKLQQPLERFLEQA----KPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNI 160 (491)
T ss_pred cCCcHHHHHHHHHHHHHhHHHHHHHHHhc----CCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHH
Confidence 1 11222222 234556777777653 14689999999999999999999999999999999998876543
No 12
>PLN02207 UDP-glycosyltransferase
Probab=99.91 E-value=3.5e-23 Score=168.82 Aligned_cols=151 Identities=17% Similarity=0.317 Sum_probs=106.0
Q ss_pred CCCCEEEEEcCCCCCChHHHHHHHHHHHHCC--CEEEEEeCCcch-hHHHhhhccCCCCCCCeeeeecCCCCC-CC-cCc
Q 043556 1 MSNPHVLVIPAPAQGHVIPLLEFSQCLANHG--VRVTFVNSEYNH-QRVLKSLEGKNNLEEKIRLVSIPDGME-PW-EDR 75 (166)
Q Consensus 1 ~~~~~il~~~~p~~GH~~P~l~la~~L~~rG--h~Vt~~t~~~~~-~~~~~~~~~~~~~~~~i~~~~l~~~~~-~~-~~~ 75 (166)
|+++|++++|+|++||++||++||+.|++|| +.||++++.... ....+.........++|+|..+|+... +. ...
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~ 80 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGT 80 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCccccc
Confidence 8899999999999999999999999999998 999999988654 222111110001113699999986432 11 112
Q ss_pred hhHHHHHHHHHhhccH----HHHHHHHHHhhcCCCCccEEEecCccchHHHHHHHhCCceEEEccccHHHHHHHhccchh
Q 043556 76 NELGNKLKKILQVMPG----NLEELIEEINEKEDEKIDCFIADAYMGWTMRIAEKMKLRRGVVWPSSAASVALCFRIPKL 151 (166)
Q Consensus 76 ~~~~~~~~~~~~~~~~----~~~~ll~~l~~~~~~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~l 151 (166)
.+....+..+.+.+.+ .+.+++++...+ ..+++|||+|.+++|+.++|+++|||++.||+++++.++++++++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~ 159 (468)
T PLN02207 81 QSVEAYVYDVIEKNIPLVRNIVMDILSSLALD-GVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADR 159 (468)
T ss_pred cCHHHHHHHHHHhcchhHHHHHHHHHHHhccC-CCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhc
Confidence 2333333233334533 445555443211 13459999999999999999999999999999999999999998765
Q ss_pred h
Q 043556 152 I 152 (166)
Q Consensus 152 ~ 152 (166)
.
T Consensus 160 ~ 160 (468)
T PLN02207 160 H 160 (468)
T ss_pred c
Confidence 3
No 13
>PLN02554 UDP-glycosyltransferase family protein
Probab=99.91 E-value=2.7e-23 Score=170.67 Aligned_cols=147 Identities=14% Similarity=0.306 Sum_probs=104.0
Q ss_pred CCCEEEEEcCCCCCChHHHHHHHHHHHHCC--CEEEEEeCCcchhHHH---hhhccCC-CCCCCeeeeecCCCCCCCcCc
Q 043556 2 SNPHVLVIPAPAQGHVIPLLEFSQCLANHG--VRVTFVNSEYNHQRVL---KSLEGKN-NLEEKIRLVSIPDGMEPWEDR 75 (166)
Q Consensus 2 ~~~~il~~~~p~~GH~~P~l~la~~L~~rG--h~Vt~~t~~~~~~~~~---~~~~~~~-~~~~~i~~~~l~~~~~~~~~~ 75 (166)
-+.||+++|+|++||++||++||+.|+.|| ..||+++++.+..... +...... ...++|++..+|++.++....
T Consensus 1 ~~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~ 80 (481)
T PLN02554 1 MKIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTTED 80 (481)
T ss_pred CceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCcccc
Confidence 078999999999999999999999999998 8999999886543211 0000000 012369999998765422111
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHHHhhc----CCCCccEEEecCccchHHHHHHHhCCceEEEccccHHHHHHHhccchh
Q 043556 76 NELGNKLKKILQVMPGNLEELIEEINEK----EDEKIDCFIADAYMGWTMRIAEKMKLRRGVVWPSSAASVALCFRIPKL 151 (166)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~----~~~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~l 151 (166)
..+.. +...+...+++.++++.+. ...+++|||+|++++|+.++|+++|||++.||+++++.+++++|+|.+
T Consensus 81 ~~~~~----~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~ 156 (481)
T PLN02554 81 PTFQS----YIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQML 156 (481)
T ss_pred hHHHH----HHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhh
Confidence 12222 2223444555555554321 112458999999999999999999999999999999999999999875
Q ss_pred h
Q 043556 152 I 152 (166)
Q Consensus 152 ~ 152 (166)
.
T Consensus 157 ~ 157 (481)
T PLN02554 157 Y 157 (481)
T ss_pred c
Confidence 4
No 14
>PLN03004 UDP-glycosyltransferase
Probab=99.90 E-value=8.1e-23 Score=166.09 Aligned_cols=149 Identities=16% Similarity=0.306 Sum_probs=106.7
Q ss_pred CCCCEEEEEcCCCCCChHHHHHHHHHHHHCC--CEEEE--EeCCcchhHHHhhhccCCCCCCCeeeeecCCCCCCCc--C
Q 043556 1 MSNPHVLVIPAPAQGHVIPLLEFSQCLANHG--VRVTF--VNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGMEPWE--D 74 (166)
Q Consensus 1 ~~~~~il~~~~p~~GH~~P~l~la~~L~~rG--h~Vt~--~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~--~ 74 (166)
|++.||+++|+|++||++||++||+.|++|| +.||+ +++........+.........++|++..+|++.+... .
T Consensus 1 ~~~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~ 80 (451)
T PLN03004 1 MGEEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSST 80 (451)
T ss_pred CCCcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCccc
Confidence 7889999999999999999999999999998 55665 4444322221111100001123699999987653211 1
Q ss_pred -chhHHHHHHHHHhhccHHHHHHHHHHhhcCCCCccEEEecCccchHHHHHHHhCCceEEEccccHHHHHHHhccchh
Q 043556 75 -RNELGNKLKKILQVMPGNLEELIEEINEKEDEKIDCFIADAYMGWTMRIAEKMKLRRGVVWPSSAASVALCFRIPKL 151 (166)
Q Consensus 75 -~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~l 151 (166)
..+....+..+.+.+..+++++++++.. ..+++|||+|++++|+.++|+++|||++.||+++++.+++++|+|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~ 156 (451)
T PLN03004 81 SRHHHESLLLEILCFSNPSVHRTLFSLSR--NFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTI 156 (451)
T ss_pred cccCHHHHHHHHHHhhhHHHHHHHHhcCC--CCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhc
Confidence 1223333333444677788888887632 14569999999999999999999999999999999999999998754
No 15
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=99.90 E-value=9.3e-23 Score=166.72 Aligned_cols=139 Identities=22% Similarity=0.369 Sum_probs=105.9
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHH-HCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCC----CCCCCcCchh
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLA-NHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPD----GMEPWEDRNE 77 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~-~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~----~~~~~~~~~~ 77 (166)
++||+++|+|++||++||++||+.|+ ++|++||+++++.+...+.+... ..++|++..+|. ++++.. .+
T Consensus 5 ~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~----~~~~i~~~~lp~p~~~glp~~~--~~ 78 (481)
T PLN02992 5 KPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFL----NSTGVDIVGLPSPDISGLVDPS--AH 78 (481)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccc----cCCCceEEECCCccccCCCCCC--cc
Confidence 68999999999999999999999998 79999999999976544422211 113588888874 333111 11
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHhhcCCCCccEEEecCccchHHHHHHHhCCceEEEccccHHHHHHHhccchh
Q 043556 78 LGNKLKKILQVMPGNLEELIEEINEKEDEKIDCFIADAYMGWTMRIAEKMKLRRGVVWPSSAASVALCFRIPKL 151 (166)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~l 151 (166)
....+..+...+.+.++++++++. .+++|||+|.+++|+.++|+++|||++.|++++++.++++.|+|.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~----~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~ 148 (481)
T PLN02992 79 VVTKIGVIMREAVPTLRSKIAEMH----QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTL 148 (481)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcC----CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhh
Confidence 222222334456677888887642 4689999999999999999999999999999999999998888754
No 16
>PLN00414 glycosyltransferase family protein
Probab=99.90 E-value=1e-22 Score=165.61 Aligned_cols=136 Identities=24% Similarity=0.358 Sum_probs=97.2
Q ss_pred CC-CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeec--C--CCCCCCc-C
Q 043556 1 MS-NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSI--P--DGMEPWE-D 74 (166)
Q Consensus 1 ~~-~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l--~--~~~~~~~-~ 74 (166)
|. ++||+++|+|++||++||++||+.|++||++||++++..+...+.+.. ...+++.+..+ | +++|++. .
T Consensus 1 ~~~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~----~~~~~i~~~~i~lP~~dGLP~g~e~ 76 (446)
T PLN00414 1 MGSKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLN----LFPDSIVFEPLTLPPVDGLPFGAET 76 (446)
T ss_pred CCCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccc----cCCCceEEEEecCCCcCCCCCcccc
Confidence 44 679999999999999999999999999999999999987665553321 11125777444 3 5565542 1
Q ss_pred chhHHH----HHHHHHhhccHHHHHHHHHHhhcCCCCccEEEecCccchHHHHHHHhCCceEEEccccHHHHHHHhc
Q 043556 75 RNELGN----KLKKILQVMPGNLEELIEEINEKEDEKIDCFIADAYMGWTMRIAEKMKLRRGVVWPSSAASVALCFR 147 (166)
Q Consensus 75 ~~~~~~----~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~ 147 (166)
..++.. .+......+.+.++++++. .++||||+|+ ++|+.++|+++|||++.||+++++.+++++|
T Consensus 77 ~~~l~~~~~~~~~~a~~~l~~~l~~~L~~------~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~ 146 (446)
T PLN00414 77 ASDLPNSTKKPIFDAMDLLRDQIEAKVRA------LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLA 146 (446)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhc------CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhC
Confidence 112211 1111122333445554432 4679999995 8899999999999999999999999999887
No 17
>PLN03007 UDP-glucosyltransferase family protein
Probab=99.90 E-value=1.7e-22 Score=166.01 Aligned_cols=143 Identities=25% Similarity=0.462 Sum_probs=96.6
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCC----CeeeeecC---CCCCCCcC-
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEE----KIRLVSIP---DGMEPWED- 74 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~----~i~~~~l~---~~~~~~~~- 74 (166)
+.||+++|+|++||++|+++||++|++||++||+++++.+...+++.........+ .+....+| +++|++.+
T Consensus 5 ~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e~ 84 (482)
T PLN03007 5 KLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCEN 84 (482)
T ss_pred CcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCccc
Confidence 57999999999999999999999999999999999999877655443211000011 34444555 34544311
Q ss_pred c--------hhHHHHHHHHHhhccHHHHHHHHHHhhcCCCCccEEEecCccchHHHHHHHhCCceEEEccccHHHHHHHh
Q 043556 75 R--------NELGNKLKKILQVMPGNLEELIEEINEKEDEKIDCFIADAYMGWTMRIAEKMKLRRGVVWPSSAASVALCF 146 (166)
Q Consensus 75 ~--------~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~ 146 (166)
. .....+...+.. ....+.+.++++.++ .++||||+|.+++|+.++|+++|||++.||+++++..+.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~l~~--~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~ 161 (482)
T PLN03007 85 VDFITSNNNDDSGDLFLKFLF-STKYFKDQLEKLLET--TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASY 161 (482)
T ss_pred ccccccccccchHHHHHHHHH-HHHHHHHHHHHHHhc--CCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHH
Confidence 0 011122333332 122233333333221 47899999999999999999999999999999998888776
Q ss_pred cc
Q 043556 147 RI 148 (166)
Q Consensus 147 ~~ 148 (166)
++
T Consensus 162 ~~ 163 (482)
T PLN03007 162 CI 163 (482)
T ss_pred HH
Confidence 44
No 18
>PLN02167 UDP-glycosyltransferase family protein
Probab=99.89 E-value=2.2e-22 Score=165.04 Aligned_cols=151 Identities=15% Similarity=0.271 Sum_probs=103.6
Q ss_pred CCCCEEEEEcCCCCCChHHHHHHHHHHHHCCC---EEEEEeCCcchh-HHHhhhccCCCCCCCeeeeecCCCCCC-CcC-
Q 043556 1 MSNPHVLVIPAPAQGHVIPLLEFSQCLANHGV---RVTFVNSEYNHQ-RVLKSLEGKNNLEEKIRLVSIPDGMEP-WED- 74 (166)
Q Consensus 1 ~~~~~il~~~~p~~GH~~P~l~la~~L~~rGh---~Vt~~t~~~~~~-~~~~~~~~~~~~~~~i~~~~l~~~~~~-~~~- 74 (166)
|+++||+++|+|++||++||++||+.|+.||. .||++++..... .............++|+|..+|++..+ +..
T Consensus 1 ~~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~~ 80 (475)
T PLN02167 1 KKEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPMEL 80 (475)
T ss_pred CCccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCccccc
Confidence 78999999999999999999999999999994 567766543211 111111000011236999999865421 111
Q ss_pred -chhHHHHHHHHHhhccHHHHHHHHHHhhc---CCC-CccEEEecCccchHHHHHHHhCCceEEEccccHHHHHHHhccc
Q 043556 75 -RNELGNKLKKILQVMPGNLEELIEEINEK---EDE-KIDCFIADAYMGWTMRIAEKMKLRRGVVWPSSAASVALCFRIP 149 (166)
Q Consensus 75 -~~~~~~~~~~~~~~~~~~~~~ll~~l~~~---~~~-~~d~iI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~ 149 (166)
.......+..+...+...++++++++..+ ... +++|||+|.+++|+.++|+++|||++.||+++++.+++++++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~ 160 (475)
T PLN02167 81 FVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLP 160 (475)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHH
Confidence 11111222233445666777777765321 012 5699999999999999999999999999999999999999887
Q ss_pred hh
Q 043556 150 KL 151 (166)
Q Consensus 150 ~l 151 (166)
.+
T Consensus 161 ~~ 162 (475)
T PLN02167 161 ER 162 (475)
T ss_pred Hh
Confidence 53
No 19
>PLN02208 glycosyltransferase family protein
Probab=99.89 E-value=2e-22 Score=163.71 Aligned_cols=137 Identities=23% Similarity=0.395 Sum_probs=97.7
Q ss_pred CC-CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeec--C--CCCCCCcC-
Q 043556 1 MS-NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSI--P--DGMEPWED- 74 (166)
Q Consensus 1 ~~-~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l--~--~~~~~~~~- 74 (166)
|+ ++||+++|+|++||++|+++||+.|++||++||++++......+.+.. ....++++..+ + ++++++..
T Consensus 1 ~~~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~----a~~~~i~~~~l~~p~~dgLp~g~~~ 76 (442)
T PLN02208 1 MEPKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHN----LFPDSIVFHPLTIPPVNGLPAGAET 76 (442)
T ss_pred CCCCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhccc----CCCCceEEEEeCCCCccCCCCCccc
Confidence 66 579999999999999999999999999999999999887665554321 11124555543 3 45554321
Q ss_pred chhHH----HHHHHHHhhccHHHHHHHHHHhhcCCCCccEEEecCccchHHHHHHHhCCceEEEccccHHHHHHHhccc
Q 043556 75 RNELG----NKLKKILQVMPGNLEELIEEINEKEDEKIDCFIADAYMGWTMRIAEKMKLRRGVVWPSSAASVALCFRIP 149 (166)
Q Consensus 75 ~~~~~----~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~ 149 (166)
..++. ..+....+.+.+.+++++++ .++||||+| ++.|+.++|+++|||++.||+++++.++ ++|++
T Consensus 77 ~~~l~~~l~~~~~~~~~~~~~~l~~~L~~------~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~ 147 (442)
T PLN02208 77 TSDIPISMDNLLSEALDLTRDQVEAAVRA------LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVP 147 (442)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhh------CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccC
Confidence 11221 11222223344556666654 467999999 5789999999999999999999999876 77765
No 20
>PLN03015 UDP-glucosyl transferase
Probab=99.89 E-value=3.9e-22 Score=162.41 Aligned_cols=147 Identities=22% Similarity=0.319 Sum_probs=107.6
Q ss_pred CCCCEEEEEcCCCCCChHHHHHHHHHHHHC-CCEEEEEeCCcchhHHH-hhhccCCCCCCCeeeeecCCCCCCC--cCch
Q 043556 1 MSNPHVLVIPAPAQGHVIPLLEFSQCLANH-GVRVTFVNSEYNHQRVL-KSLEGKNNLEEKIRLVSIPDGMEPW--EDRN 76 (166)
Q Consensus 1 ~~~~~il~~~~p~~GH~~P~l~la~~L~~r-Gh~Vt~~t~~~~~~~~~-~~~~~~~~~~~~i~~~~l~~~~~~~--~~~~ 76 (166)
|-++||+++|+|++||++||++||+.|++| |..||++++........ +..........+|++..+|....++ ....
T Consensus 1 ~~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~~ 80 (470)
T PLN03015 1 MDQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPDA 80 (470)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCCc
Confidence 778999999999999999999999999987 99999998876443321 1100000011258888888533211 1001
Q ss_pred hHHHHHHHHHhhccHHHHHHHHHHhhcCCCCccEEEecCccchHHHHHHHhCCc-eEEEccccHHHHHHHhccchh
Q 043556 77 ELGNKLKKILQVMPGNLEELIEEINEKEDEKIDCFIADAYMGWTMRIAEKMKLR-RGVVWPSSAASVALCFRIPKL 151 (166)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~iI~D~~~~~~~~vA~~l~iP-~i~~~~~~~~~~~~~~~~~~l 151 (166)
+....+..+.+.+.++++++++++. .+++|||+|.+++|+.++|+++||| ++.|++++++.+++++|+|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~l~----~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~ 152 (470)
T PLN03015 81 TIFTKMVVKMRAMKPAVRDAVKSMK----RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVL 152 (470)
T ss_pred cHHHHHHHHHHhchHHHHHHHHhcC----CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhh
Confidence 2222233344467888999998763 3679999999999999999999999 688999999999899998864
No 21
>PLN02764 glycosyltransferase family protein
Probab=99.88 E-value=1.6e-21 Score=158.39 Aligned_cols=136 Identities=23% Similarity=0.284 Sum_probs=100.1
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecC--CCCCCC-cCch---
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIP--DGMEPW-EDRN--- 76 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~--~~~~~~-~~~~--- 76 (166)
+.||+++|+|++||++||++||+.|++||+.||+++++.....+.+. ........+.+..+| +++|++ +...
T Consensus 5 ~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~--~~~~~~~~v~~~~~p~~~glp~g~e~~~~~~ 82 (453)
T PLN02764 5 KFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL--NLFPHNIVFRSVTVPHVDGLPVGTETVSEIP 82 (453)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc--ccCCCCceEEEEECCCcCCCCCcccccccCC
Confidence 68999999999999999999999999999999999999865544321 000111136666776 566554 2111
Q ss_pred -hHHHHHHHHHhhccHHHHHHHHHHhhcCCCCccEEEecCccchHHHHHHHhCCceEEEccccHHHHHHHhc
Q 043556 77 -ELGNKLKKILQVMPGNLEELIEEINEKEDEKIDCFIADAYMGWTMRIAEKMKLRRGVVWPSSAASVALCFR 147 (166)
Q Consensus 77 -~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~ 147 (166)
.....+....+.+.+++++++++ .++||||+|+ +.|+.++|+++|||++.||+++++.++++++
T Consensus 83 ~~~~~~~~~a~~~~~~~~~~~l~~------~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~ 147 (453)
T PLN02764 83 VTSADLLMSAMDLTRDQVEVVVRA------VEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV 147 (453)
T ss_pred hhHHHHHHHHHHHhHHHHHHHHHh------CCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc
Confidence 11122223333456778888765 3579999995 8899999999999999999999999999864
No 22
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.78 E-value=1.6e-18 Score=139.26 Aligned_cols=125 Identities=18% Similarity=0.163 Sum_probs=92.8
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCCCCC----cC-----
Q 043556 4 PHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGMEPW----ED----- 74 (166)
Q Consensus 4 ~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~----~~----- 74 (166)
+||++++.|+.||++|++.|+++|++|||+|++++++.....+++ .|++|..+++..+.. ..
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~---------~G~~~~~~~~~~~~~~~~~~~~~~~~ 71 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEA---------AGLEFVPVGGDPDELLASPERNAGLL 71 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHH---------cCCceeeCCCCHHHHHhhhhhccccc
Confidence 599999999999999999999999999999999999987777665 378888877543211 00
Q ss_pred ---chhHHHHHHHHHhhccHHHHHHHHHHhhcCCCCccEEEecCccchHHHHHHHhCCceEEEccccHH
Q 043556 75 ---RNELGNKLKKILQVMPGNLEELIEEINEKEDEKIDCFIADAYMGWTMRIAEKMKLRRGVVWPSSAA 140 (166)
Q Consensus 75 ---~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~~~~~~ 140 (166)
..........+.+.....++++++.+. ..++|+||+|.+.+++..+|+++|||++.+++++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~ 137 (401)
T cd03784 72 LLGPGLLLGALRLLRREAEAMLDDLVAAAR---DWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDT 137 (401)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhc---ccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCC
Confidence 011112223333334444555555543 268999999998888999999999999999988754
No 23
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.73 E-value=3.5e-17 Score=131.34 Aligned_cols=118 Identities=24% Similarity=0.263 Sum_probs=86.2
Q ss_pred EcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCCCCC-cC----chhHHHHHH
Q 043556 9 IPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGMEPW-ED----RNELGNKLK 83 (166)
Q Consensus 9 ~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~-~~----~~~~~~~~~ 83 (166)
+.+|+.||++|++.||++|++|||+||+++++.+.+.+++. |+.+..++...+.. .. ..+.....+
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA---------GAEFVLYGSALPPPDNPPENTEEEPIDIIE 71 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc---------CCEEEecCCcCccccccccccCcchHHHHH
Confidence 46799999999999999999999999999999988887663 78888877544321 10 022333334
Q ss_pred HHHhhccHHHHHHHHHHhhcCCCCccEEEecCccchHHHHHHHhCCceEEEcccc
Q 043556 84 KILQVMPGNLEELIEEINEKEDEKIDCFIADAYMGWTMRIAEKMKLRRGVVWPSS 138 (166)
Q Consensus 84 ~~~~~~~~~~~~ll~~l~~~~~~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~~~~ 138 (166)
.+.......+.++.+.+. ..++|+||+|.++.|+..+|+++|||++.+.+.+
T Consensus 72 ~~~~~~~~~~~~l~~~~~---~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~ 123 (392)
T TIGR01426 72 KLLDEAEDVLPQLEEAYK---GDRPDLIVYDIASWTGRLLARKWDVPVISSFPTF 123 (392)
T ss_pred HHHHHHHHHHHHHHHHhc---CCCCCEEEECCccHHHHHHHHHhCCCEEEEehhh
Confidence 443333334444444433 2589999999998899999999999999987654
No 24
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.60 E-value=4.7e-15 Score=102.60 Aligned_cols=125 Identities=17% Similarity=0.189 Sum_probs=79.6
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCCCCCcCchhHHHHHHHH
Q 043556 6 VLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGMEPWEDRNELGNKLKKI 85 (166)
Q Consensus 6 il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~ 85 (166)
|++++.++.||++|++.|+++|++|||+|++.+++...+.+++ .|++|..++.+. ...............
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~---------~Gl~~~~~~~~~-~~~~~~~~~~~~~~~ 70 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEA---------AGLEFVPIPGDS-RLPRSLEPLANLRRL 70 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHH---------TT-EEEESSSCG-GGGHHHHHHHHHHCH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccc---------cCceEEEecCCc-CcCcccchhhhhhhH
Confidence 7899999999999999999999999999999999999888865 389999987551 100000111111111
Q ss_pred Hhh--ccHHHHHHHHHHhhc-----C-CCCccEEEecCccchHHHHHHHhCCceEEEccccHH
Q 043556 86 LQV--MPGNLEELIEEINEK-----E-DEKIDCFIADAYMGWTMRIAEKMKLRRGVVWPSSAA 140 (166)
Q Consensus 86 ~~~--~~~~~~~ll~~l~~~-----~-~~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~~~~~~ 140 (166)
.+. .-....+.++..... . ....|+++.+.....+..+||++|||++.....+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~ 133 (139)
T PF03033_consen 71 ARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWF 133 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGG
T ss_pred HHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcC
Confidence 100 000112222221111 0 135677888888888899999999999998777653
No 25
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=99.29 E-value=7.2e-12 Score=103.36 Aligned_cols=147 Identities=25% Similarity=0.384 Sum_probs=90.8
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCC---CCCCeeeeecCCCCCCCcCch--h
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNN---LEEKIRLVSIPDGMEPWEDRN--E 77 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~---~~~~i~~~~l~~~~~~~~~~~--~ 77 (166)
+.|++++++|++||++|+.++++.|++|||+||++++................ ....+.+...+++++...... .
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGLPEGWEDDDLD 84 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhhccchHHHHHH
Confidence 47899999999999999999999999999999999988654432210000000 000111111112222211110 1
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHhhcCCCCccEEEecCccchHHHHHHHhC-CceEEEccccHHHHHHHhccc
Q 043556 78 LGNKLKKILQVMPGNLEELIEEINEKEDEKIDCFIADAYMGWTMRIAEKMK-LRRGVVWPSSAASVALCFRIP 149 (166)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~iI~D~~~~~~~~vA~~l~-iP~i~~~~~~~~~~~~~~~~~ 149 (166)
.......+...+...+++....+......++||+|+|.+..|...++.+.+ ++...+++.++...+...+.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~ 157 (496)
T KOG1192|consen 85 ISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSP 157 (496)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCc
Confidence 111123333344445555443333221234999999999888888887775 999999999999888877665
No 26
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=99.20 E-value=2e-10 Score=95.32 Aligned_cols=127 Identities=15% Similarity=0.282 Sum_probs=77.2
Q ss_pred CCEEEEE-cCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCCCC------CcC-
Q 043556 3 NPHVLVI-PAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGMEP------WED- 74 (166)
Q Consensus 3 ~~~il~~-~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~------~~~- 74 (166)
..||+++ |.++.||+..+.+++++|++|||+||++++...... ... ...+++...++...+. ...
T Consensus 20 ~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~~-~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (507)
T PHA03392 20 AARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVYY-ASH------LCGNITEIDASLSVEYFKKLVKSSAV 92 (507)
T ss_pred cccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEeccccccc-ccC------CCCCEEEEEcCCChHHHHHHHhhhhH
Confidence 4678866 889999999999999999999999999988642111 000 0134554444311100 000
Q ss_pred --c-h---h---H-HHHHHHHHhhc-----cHHHHHHHHHHhhcCCCCccEEEecCccchHHHHHHHh-CCceEEEcccc
Q 043556 75 --R-N---E---L-GNKLKKILQVM-----PGNLEELIEEINEKEDEKIDCFIADAYMGWTMRIAEKM-KLRRGVVWPSS 138 (166)
Q Consensus 75 --~-~---~---~-~~~~~~~~~~~-----~~~~~~ll~~l~~~~~~~~d~iI~D~~~~~~~~vA~~l-~iP~i~~~~~~ 138 (166)
. . + . ......+.+.+ .+.+.+++++ + +.+||+||+|.+..|+..+|+++ ++|.|.+.+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~--~--~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~ 168 (507)
T PHA03392 93 FRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIAN--K--NNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGY 168 (507)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhc--C--CCceeEEEecccchhHHHHHHHhCCCCEEEEcCCC
Confidence 0 0 0 0 00111111112 2334444431 1 26899999999888888899999 99988887755
Q ss_pred HH
Q 043556 139 AA 140 (166)
Q Consensus 139 ~~ 140 (166)
..
T Consensus 169 ~~ 170 (507)
T PHA03392 169 GL 170 (507)
T ss_pred Cc
Confidence 43
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=99.04 E-value=5e-10 Score=90.63 Aligned_cols=125 Identities=20% Similarity=0.205 Sum_probs=79.1
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCCCCCcCchhHHHHH
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGMEPWEDRNELGNKL 82 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 82 (166)
++||+++..|..||++|++.||++|.+|||+|++++++.+.+.+++. ++.|..++....+.....+.....
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a---------g~~f~~~~~~~~~~~~~~~~~~~~ 71 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA---------GLAFVAYPIRDSELATEDGKFAGV 71 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh---------CcceeeccccCChhhhhhhhhhcc
Confidence 47999999999999999999999999999999999999999888775 666766654311111011111111
Q ss_pred HH---HHhhccHHHHHHHHHHhhcCCCCccEEEecCccchHHHHHHHhCCceEEEccccHH
Q 043556 83 KK---ILQVMPGNLEELIEEINEKEDEKIDCFIADAYMGWTMRIAEKMKLRRGVVWPSSAA 140 (166)
Q Consensus 83 ~~---~~~~~~~~~~~ll~~l~~~~~~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~~~~~~ 140 (166)
+. ......-...+.++-+.+ ..+|+++.|.-.+.+ .+++..++|++........
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~e---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 128 (406)
T COG1819 72 KSFRRLLQQFKKLIRELLELLRE---LEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYT 128 (406)
T ss_pred chhHHHhhhhhhhhHHHHHHHHh---cchhhhhcchhhhhh-hhhhhcccchhhhhhhhcc
Confidence 11 111122223444444432 457877777655444 6677777777765554443
No 28
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=98.96 E-value=2.9e-11 Score=100.01 Aligned_cols=122 Identities=25% Similarity=0.326 Sum_probs=60.2
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCCCCCc--C--c---h-
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGMEPWE--D--R---N- 76 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~--~--~---~- 76 (166)
||+++|. +.||+++|..++++|++|||+||++++.... ...... ..++++..++.+.+... . . .
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNPSK------PSNIRFETYPDPYPEEEFEEIFPEFISK 73 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T------------S-CCEEEE-----TT------TTHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccc-cccccc------ccceeeEEEcCCcchHHHhhhhHHHHHH
Confidence 7888885 7799999999999999999999999886422 111111 13566666654432211 0 0 0
Q ss_pred ---------hHHHHHHHH-------HhhccHHH--HHHHHHHhhcCCCCccEEEecCccchHHHHHHHhCCceEEEccc
Q 043556 77 ---------ELGNKLKKI-------LQVMPGNL--EELIEEINEKEDEKIDCFIADAYMGWTMRIAEKMKLRRGVVWPS 137 (166)
Q Consensus 77 ---------~~~~~~~~~-------~~~~~~~~--~~ll~~l~~~~~~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~~~ 137 (166)
.....+..+ ...|...+ .++++.+++ .++|++|.|.+.+|+..+|+.+|+|.+.+.++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~---~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~ 149 (500)
T PF00201_consen 74 FFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS---EKFDLVISDAFDPCGLALAHYLGIPVIIISSS 149 (500)
T ss_dssp HHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH---HHHCT-EEEEEESSHHHHHHHHHHTHHHHHHC
T ss_pred HhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh---hccccceEeeccchhHHHHHHhcCCeEEEecc
Confidence 011111111 11121111 122333332 47999999999999999999999999876543
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.89 E-value=3.1e-08 Score=77.25 Aligned_cols=120 Identities=19% Similarity=0.194 Sum_probs=71.2
Q ss_pred CEEEEEcCC-CCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCCC-CCcCchh----
Q 043556 4 PHVLVIPAP-AQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGME-PWEDRNE---- 77 (166)
Q Consensus 4 ~~il~~~~p-~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~-~~~~~~~---- 77 (166)
+||++...+ |.||+.-.+.|+++| |||+|++++.....+.+.. .+....+++-.. ......+
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 68 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP----------RFPVREIPGLGPIQENGRLDRWKT 68 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc----------ccCEEEccCceEeccCCccchHHH
Confidence 477776665 789999999999999 6999999998865433322 233333332110 1111111
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHhhcCCCCccEEEecCccchHHHHHHHhCCceEEEccccHH
Q 043556 78 LGNKLKKILQVMPGNLEELIEEINEKEDEKIDCFIADAYMGWTMRIAEKMKLRRGVVWPSSAA 140 (166)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~~~~~~ 140 (166)
...... ........++++.+.+.+ .+||+||+|.. +.+...|+..|+|++.+......
T Consensus 69 ~~~~~~-~~~~~~~~~~~~~~~l~~---~~pDlVIsD~~-~~~~~aa~~~giP~i~i~~~~~~ 126 (318)
T PF13528_consen 69 VRNNIR-WLARLARRIRREIRWLRE---FRPDLVISDFY-PLAALAARRAGIPVIVISNQYWF 126 (318)
T ss_pred HHHHHH-hhHHHHHHHHHHHHHHHh---cCCCEEEEcCh-HHHHHHHHhcCCCEEEEEehHHc
Confidence 111111 111122234444444443 68999999953 34568889999999986655543
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.83 E-value=5.8e-08 Score=76.24 Aligned_cols=120 Identities=16% Similarity=0.190 Sum_probs=66.4
Q ss_pred EEEE-EcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCee-eeecCCC-CCCCcCchhHHHH
Q 043556 5 HVLV-IPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIR-LVSIPDG-MEPWEDRNELGNK 81 (166)
Q Consensus 5 ~il~-~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~-~~~l~~~-~~~~~~~~~~~~~ 81 (166)
||++ +...|.||+.|.+.++++|.+ ||+|+++++......+... ++. +...|.. ........+....
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~---------~~~~~~~~p~~~~~~~~~~~~~~~~ 70 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKY---------GFKVFETFPGIKLKGEDGKVNIVKT 70 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhh---------cCcceeccCCceEeecCCcCcHHHH
Confidence 3455 556667999999999999999 9999999877633222221 222 2222210 0000000011111
Q ss_pred HHHHHhhccHHHHHHHHHHhhcCCCCccEEEecCccchHHHHHHHhCCceEEEcccc
Q 043556 82 LKKILQVMPGNLEELIEEINEKEDEKIDCFIADAYMGWTMRIAEKMKLRRGVVWPSS 138 (166)
Q Consensus 82 ~~~~~~~~~~~~~~ll~~l~~~~~~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~~~~ 138 (166)
...........+.+..+.+.+ .+||+||+| +-+.+..+|+.+|||++.+.-+.
T Consensus 71 l~~~~~~~~~~~~~~~~~l~~---~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~ 123 (321)
T TIGR00661 71 LRNKEYSPKKAIRREINIIRE---YNPDLIISD-FEYSTVVAAKLLKIPVICISNQN 123 (321)
T ss_pred HHhhccccHHHHHHHHHHHHh---cCCCEEEEC-CchHHHHHHHhcCCCEEEEecch
Confidence 110000001123333333332 689999999 54556789999999999765543
No 31
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=98.57 E-value=1.1e-06 Score=70.15 Aligned_cols=119 Identities=15% Similarity=0.189 Sum_probs=72.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhH-HHhhhccCCCCCCCeeeeecCC-CCCCCcCchhHHHHH
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQR-VLKSLEGKNNLEEKIRLVSIPD-GMEPWEDRNELGNKL 82 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~-~~~~~~~~~~~~~~i~~~~l~~-~~~~~~~~~~~~~~~ 82 (166)
+|++...++-||+.|.+.++++|.++||+|.++++....+. +.+ ..++.+..++. ++... ..+. .+
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~--------~~g~~~~~~~~~~l~~~---~~~~-~~ 70 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIE--------KENIPYYSISSGKLRRY---FDLK-NI 70 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCc--------ccCCcEEEEeccCcCCC---chHH-HH
Confidence 68899999999999999999999999999999997654322 111 12566666652 12110 1111 11
Q ss_pred HHHHhhccHHHHHHHHHHhhcCCCCccEEEecCccc--hHHHHHHHhCCceEEEccccH
Q 043556 83 KKILQVMPGNLEELIEEINEKEDEKIDCFIADAYMG--WTMRIAEKMKLRRGVVWPSSA 139 (166)
Q Consensus 83 ~~~~~~~~~~~~~ll~~l~~~~~~~~d~iI~D~~~~--~~~~vA~~l~iP~i~~~~~~~ 139 (166)
........ ...+.++-+.+ .+||+||....+. .+...|..+++|++..-....
T Consensus 71 ~~~~~~~~-~~~~~~~i~~~---~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~ 125 (352)
T PRK12446 71 KDPFLVMK-GVMDAYVRIRK---LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMT 125 (352)
T ss_pred HHHHHHHH-HHHHHHHHHHh---cCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCC
Confidence 11111111 11222222221 6899999876543 356778889999998655543
No 32
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=98.17 E-value=3.7e-05 Score=61.39 Aligned_cols=122 Identities=16% Similarity=0.155 Sum_probs=73.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCC-EEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCCCCCc-CchhHHHHH
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGV-RVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGMEPWE-DRNELGNKL 82 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh-~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~-~~~~~~~~~ 82 (166)
+|++...++-||+.|.+.++++|.+||+ +|.++.+....+..... ..++.+..++.+..... ........+
T Consensus 2 ~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~-------~~~~~~~~I~~~~~~~~~~~~~~~~~~ 74 (357)
T COG0707 2 KIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVK-------QYGIEFELIPSGGLRRKGSLKLLKAPF 74 (357)
T ss_pred eEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeecc-------ccCceEEEEecccccccCcHHHHHHHH
Confidence 5778888888999999999999999999 57777555433322111 12677777764432221 111122222
Q ss_pred HHHHhhccHHHHHHHHHHhhcCCCCccEEEecCcc-c-hHHHHHHHhCCceEEEccccHHH
Q 043556 83 KKILQVMPGNLEELIEEINEKEDEKIDCFIADAYM-G-WTMRIAEKMKLRRGVVWPSSAAS 141 (166)
Q Consensus 83 ~~~~~~~~~~~~~ll~~l~~~~~~~~d~iI~D~~~-~-~~~~vA~~l~iP~i~~~~~~~~~ 141 (166)
..+. ..-..+++++. .+||+||.=..+ . .+...|..+|||.+.--.-....
T Consensus 75 ~~~~--~~~~a~~il~~------~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~~G 127 (357)
T COG0707 75 KLLK--GVLQARKILKK------LKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAVPG 127 (357)
T ss_pred HHHH--HHHHHHHHHHH------cCCCEEEecCCccccHHHHHHHhCCCCEEEEecCCCcc
Confidence 2111 11123555554 689999974433 3 45667778999999865544443
No 33
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=98.08 E-value=0.00011 Score=57.79 Aligned_cols=114 Identities=17% Similarity=0.144 Sum_probs=66.6
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCCCCCcCchhHHHHHHH
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGMEPWEDRNELGNKLKK 84 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 84 (166)
||++++....||+.....|+++|.++||+|++++.+..... ... ...++++..++..-... .+....+..
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~--~~~-----~~~g~~~~~i~~~~~~~---~~~~~~l~~ 71 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEK--RLV-----PKAGIEFYFIPVGGLRR---KGSFRLIKT 71 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchh--ccc-----ccCCCceEEEeccCcCC---CChHHHHHH
Confidence 89999999999999888999999999999999986432111 000 01256665554221011 111111111
Q ss_pred HHhh--ccHHHHHHHHHHhhcCCCCccEEEecCccc--hHHHHHHHhCCceEEE
Q 043556 85 ILQV--MPGNLEELIEEINEKEDEKIDCFIADAYMG--WTMRIAEKMKLRRGVV 134 (166)
Q Consensus 85 ~~~~--~~~~~~~ll~~l~~~~~~~~d~iI~D~~~~--~~~~vA~~l~iP~i~~ 134 (166)
.... .-..+.+++++ .+||+|++..... .+..++...++|.+..
T Consensus 72 ~~~~~~~~~~l~~~i~~------~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~ 119 (348)
T TIGR01133 72 PLKLLKAVFQARRILKK------FKPDAVIGFGGYVSGPAGLAAKLLGIPLFHH 119 (348)
T ss_pred HHHHHHHHHHHHHHHHh------cCCCEEEEcCCcccHHHHHHHHHcCCCEEEE
Confidence 1110 00123344443 6899999875332 3444677789999863
No 34
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=98.02 E-value=0.00014 Score=57.55 Aligned_cols=116 Identities=16% Similarity=0.172 Sum_probs=67.7
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCC-CCCCcCchhHHHHH
Q 043556 4 PHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDG-MEPWEDRNELGNKL 82 (166)
Q Consensus 4 ~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~-~~~~~~~~~~~~~~ 82 (166)
++|+++..+.-||...++.|++.|.++||+|++++........ .. ...++++..++.. ..............
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~--~~-----~~~g~~~~~~~~~~~~~~~~~~~l~~~~ 74 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEAR--LV-----PKAGIEFHFIPSGGLRRKGSLANLKAPF 74 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhh--cc-----ccCCCcEEEEeccCcCCCChHHHHHHHH
Confidence 7899998877899999999999999999999999886522111 00 0125666555421 11110000011111
Q ss_pred HHHHhhccHHHHHHHHHHhhcCCCCccEEEecCcc-ch-HHHHHHHhCCceEEE
Q 043556 83 KKILQVMPGNLEELIEEINEKEDEKIDCFIADAYM-GW-TMRIAEKMKLRRGVV 134 (166)
Q Consensus 83 ~~~~~~~~~~~~~ll~~l~~~~~~~~d~iI~D~~~-~~-~~~vA~~l~iP~i~~ 134 (166)
..+. .. ..+.+++++ .+||+|++.... .+ +..++...++|.+..
T Consensus 75 ~~~~-~~-~~~~~~ik~------~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~ 120 (357)
T PRK00726 75 KLLK-GV-LQARKILKR------FKPDVVVGFGGYVSGPGGLAARLLGIPLVIH 120 (357)
T ss_pred HHHH-HH-HHHHHHHHh------cCCCEEEECCCcchhHHHHHHHHcCCCEEEE
Confidence 1111 11 123333433 589999988632 33 455677788999875
No 35
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.02 E-value=0.00014 Score=57.22 Aligned_cols=115 Identities=18% Similarity=0.252 Sum_probs=67.2
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCC-CCCCcCchhHHHHHH
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDG-MEPWEDRNELGNKLK 83 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~-~~~~~~~~~~~~~~~ 83 (166)
+|++.....-||....+.+++.|.++||+|++++....... ... ...++++..++.. .........+...+.
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEA--RLV-----PKAGIPLHTIPVGGLRRKGSLKKLKAPFK 73 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchh--hcc-----cccCCceEEEEecCcCCCChHHHHHHHHH
Confidence 57888888889999999999999999999999987643211 110 0125666555422 111100011111111
Q ss_pred HHHhhccHHHHHHHHHHhhcCCCCccEEEecCc--cchHHHHHHHhCCceEEE
Q 043556 84 KILQVMPGNLEELIEEINEKEDEKIDCFIADAY--MGWTMRIAEKMKLRRGVV 134 (166)
Q Consensus 84 ~~~~~~~~~~~~ll~~l~~~~~~~~d~iI~D~~--~~~~~~vA~~l~iP~i~~ 134 (166)
+.. ....+.+++++ .+||+|++..- ...+...+...++|.+..
T Consensus 74 -~~~-~~~~~~~~i~~------~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~ 118 (350)
T cd03785 74 -LLK-GVLQARKILKK------FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIH 118 (350)
T ss_pred -HHH-HHHHHHHHHHh------cCCCEEEECCCCcchHHHHHHHHhCCCEEEE
Confidence 111 11123334433 68999998653 233566788889999864
No 36
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=97.93 E-value=0.00011 Score=59.34 Aligned_cols=112 Identities=14% Similarity=0.095 Sum_probs=65.9
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCCCCCcCchhHHHHH
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGMEPWEDRNELGNKL 82 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 82 (166)
-++|++....+-||+.|- .++++|.++|++|+++..... .+++.+. ...+.+..++ ..++.+.+
T Consensus 5 ~~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g~-----~~~~~~~~l~--------v~G~~~~l 68 (385)
T TIGR00215 5 IPTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEGC-----EVLYSMEELS--------VMGLREVL 68 (385)
T ss_pred CCeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCcC-----ccccChHHhh--------hccHHHHH
Confidence 379999999999999999 999999999999999986643 3333210 0122322222 01111111
Q ss_pred HHHHhhccHHHHHHHHHHhhcCCCCccEEE-ecCccch--HHHHHHHhCCceEEE
Q 043556 83 KKILQVMPGNLEELIEEINEKEDEKIDCFI-ADAYMGW--TMRIAEKMKLRRGVV 134 (166)
Q Consensus 83 ~~~~~~~~~~~~~ll~~l~~~~~~~~d~iI-~D~~~~~--~~~vA~~l~iP~i~~ 134 (166)
..+.. ....+.+..+.+.+ .+||+|| .|.-... ....|+.+|||.+..
T Consensus 69 ~~~~~-~~~~~~~~~~~l~~---~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~ 119 (385)
T TIGR00215 69 GRLGR-LLKIRKEVVQLAKQ---AKPDLLVGIDAPDFNLTKELKKKDPGIKIIYY 119 (385)
T ss_pred HHHHH-HHHHHHHHHHHHHh---cCCCEEEEeCCCCccHHHHHHHhhCCCCEEEE
Confidence 11111 11122233333332 6899998 6752222 334788899999987
No 37
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=97.41 E-value=0.002 Score=51.37 Aligned_cols=37 Identities=11% Similarity=0.211 Sum_probs=32.7
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 4 PHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 4 ~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
++|+++....-||+.|-. ++++|.++++++.++....
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~ 38 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGG 38 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEcc
Confidence 489999999999999999 9999999988888887543
No 38
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=97.34 E-value=0.0048 Score=47.67 Aligned_cols=47 Identities=23% Similarity=0.431 Sum_probs=36.0
Q ss_pred CCCChHHHHHHHHHHHHCCCEEEEEeCCcchh---HHHhhhccCCCCCCCeeeeecCCC
Q 043556 13 AQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQ---RVLKSLEGKNNLEEKIRLVSIPDG 68 (166)
Q Consensus 13 ~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~---~~~~~~~~~~~~~~~i~~~~l~~~ 68 (166)
|.||+.=++.||++|.++|++|+|++...... .+.. .++.+..+++.
T Consensus 13 G~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~---------~g~~v~~~~~~ 62 (279)
T TIGR03590 13 GLGHVMRCLTLARALHAQGAEVAFACKPLPGDLIDLLLS---------AGFPVYELPDE 62 (279)
T ss_pred cccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHH---------cCCeEEEecCC
Confidence 56999999999999999999999999875432 2222 36777777643
No 39
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=97.33 E-value=0.009 Score=48.60 Aligned_cols=40 Identities=23% Similarity=0.203 Sum_probs=34.6
Q ss_pred CCCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 2 SNPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 2 ~~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
++.+|++++..-.|+-.=+..+|+.|+++||+|++++...
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~ 41 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLE 41 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecC
Confidence 3568888888888888888999999999999999998754
No 40
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=97.14 E-value=0.013 Score=47.22 Aligned_cols=115 Identities=13% Similarity=0.129 Sum_probs=61.1
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCCCCCcCchhHHHHHHH
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGMEPWEDRNELGNKLKK 84 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 84 (166)
||+|+---.+| ++.+||+.|+++||+|++++........ .+++...++...............+..
T Consensus 1 ~il~~~~~~p~---~~~~la~~L~~~G~~v~~~~~~~~~~~~-----------~~v~~~~~~~~~~~~~~~~~~~~~~~~ 66 (396)
T cd03818 1 RILFVHQNFPG---QFRHLAPALAAQGHEVVFLTEPNAAPPP-----------GGVRVVRYRPPRGPTSGTHPYLREFEE 66 (396)
T ss_pred CEEEECCCCch---hHHHHHHHHHHCCCEEEEEecCCCCCCC-----------CCeeEEEecCCCCCCCCCCccchhHHH
Confidence 46666444443 3678999999999999999987653211 136655554221111000011111111
Q ss_pred HHhhccHHHHHHHHHHhhcCCCCccEEEecCccchHHHHHHHh-CCceEEEc
Q 043556 85 ILQVMPGNLEELIEEINEKEDEKIDCFIADAYMGWTMRIAEKM-KLRRGVVW 135 (166)
Q Consensus 85 ~~~~~~~~~~~ll~~l~~~~~~~~d~iI~D~~~~~~~~vA~~l-~iP~i~~~ 135 (166)
........++ .+..+... ..+||+|++.....++..+.+.+ ++|.+.+.
T Consensus 67 ~~~~~~~~~~-~~~~~~~~-~~~pdvi~~h~~~~~~~~l~~~~~~~~~v~~~ 116 (396)
T cd03818 67 AVLRGQAVAR-ALLALRAK-GFRPDVIVAHPGWGETLFLKDVWPDAPLIGYF 116 (396)
T ss_pred HHHHHHHHHH-HHHHHHhc-CCCCCEEEECCccchhhhHHHhCCCCCEEEEE
Confidence 1111111122 22222222 26899999887666666677774 48888754
No 41
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=97.00 E-value=0.024 Score=38.47 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=62.1
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCCCCCcCchhHHHHHHH
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGMEPWEDRNELGNKLKK 84 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 84 (166)
+|++++.....| ..++++.|.++|++|++++.....+.... ..++.+..++... ......+.
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~--------~~~i~~~~~~~~~------k~~~~~~~- 62 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEI--------IEGIKVIRLPSPR------KSPLNYIK- 62 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhH--------hCCeEEEEecCCC------CccHHHHH-
Confidence 466666666555 56889999999999999999655423221 1478887775331 11112221
Q ss_pred HHhhccHHHHHHHHHHhhcCCCCccEEEecCccc-h--HHHHHHHhC-CceEEEcc
Q 043556 85 ILQVMPGNLEELIEEINEKEDEKIDCFIADAYMG-W--TMRIAEKMK-LRRGVVWP 136 (166)
Q Consensus 85 ~~~~~~~~~~~ll~~l~~~~~~~~d~iI~D~~~~-~--~~~vA~~l~-iP~i~~~~ 136 (166)
+ . .+..++++ .+||+|.+-.... + +..++...+ +|.+...-
T Consensus 63 ~----~-~l~k~ik~------~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 63 Y----F-RLRKIIKK------EKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred H----H-HHHHHhcc------CCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 1 1 24444543 6899998666543 2 233556677 88876443
No 42
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=96.98 E-value=0.0065 Score=48.20 Aligned_cols=109 Identities=17% Similarity=0.258 Sum_probs=57.8
Q ss_pred CCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCCCCCcCchhHHHHHHHHHhhccHHH
Q 043556 14 QGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGMEPWEDRNELGNKLKKILQVMPGNL 93 (166)
Q Consensus 14 ~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (166)
-|.-..+.++++.|+++||+|++++........... ....++.+..++..................+.. .+
T Consensus 21 GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 91 (398)
T cd03800 21 GGQNVYVLELARALARLGHEVDIFTRRIDDALPPIV-----ELAPGVRVVRVPAGPAEYLPKEELWPYLDEFAD----DL 91 (398)
T ss_pred CceeehHHHHHHHHhccCceEEEEEecCCcccCCcc-----ccccceEEEecccccccCCChhhcchhHHHHHH----HH
Confidence 377789999999999999999999865432111000 112356665554211000000111111111111 12
Q ss_pred HHHHHHHhhcCCCCccEEEecCcc--chHHHHHHHhCCceEEEc
Q 043556 94 EELIEEINEKEDEKIDCFIADAYM--GWTMRIAEKMKLRRGVVW 135 (166)
Q Consensus 94 ~~ll~~l~~~~~~~~d~iI~D~~~--~~~~~vA~~l~iP~i~~~ 135 (166)
.+.++. . ..+||+|+..... ..+..++.++++|++...
T Consensus 92 ~~~~~~---~-~~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~~ 131 (398)
T cd03800 92 LRFLRR---E-GGRPDLIHAHYWDSGLVALLLARRLGIPLVHTF 131 (398)
T ss_pred HHHHHh---c-CCCccEEEEecCccchHHHHHHhhcCCceEEEe
Confidence 222222 1 0289999977533 235667888999988643
No 43
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=96.81 E-value=0.0043 Score=42.49 Aligned_cols=98 Identities=21% Similarity=0.263 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCCCCCcCchhHHHHHHHHHhhccHHHHHHHH
Q 043556 19 PLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGMEPWEDRNELGNKLKKILQVMPGNLEELIE 98 (166)
Q Consensus 19 P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 98 (166)
-+.+++++|.++||+|+++++.......+.. ..++++..++-..... ........ ..+.+++.
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~--~~~~~~~~--------~~~~~~l~ 68 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDEEE-------EDGVRVHRLPLPRRPW--PLRLLRFL--------RRLRRLLA 68 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-SEE-------ETTEEEEEE--S-SSS--GGGHCCHH--------HHHHHHCH
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcccccc-------cCCceEEeccCCccch--hhhhHHHH--------HHHHHHHh
Confidence 3678999999999999999976554322111 1367776665221110 00000011 12333331
Q ss_pred HHhhcCCCCccEEEecCccc-hHHHHHH-HhCCceEEEccc
Q 043556 99 EINEKEDEKIDCFIADAYMG-WTMRIAE-KMKLRRGVVWPS 137 (166)
Q Consensus 99 ~l~~~~~~~~d~iI~D~~~~-~~~~vA~-~l~iP~i~~~~~ 137 (166)
. . ..++|+|....... ....++. +.++|.+...-.
T Consensus 69 ~-~---~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 105 (160)
T PF13579_consen 69 A-R---RERPDVVHAHSPTAGLVAALARRRRGIPLVVTVHG 105 (160)
T ss_dssp H-C---T---SEEEEEHHHHHHHHHHHHHHHT--EEEE-SS
T ss_pred h-h---ccCCeEEEecccchhHHHHHHHHccCCcEEEEECC
Confidence 1 1 26899999666432 3444555 899999986654
No 44
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=96.80 E-value=0.09 Score=36.35 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=41.0
Q ss_pred CCCCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHH
Q 043556 1 MSNPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRV 46 (166)
Q Consensus 1 ~~~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~ 46 (166)
|++.+|++.+.++-+|-.-..-++..|.++|++|+++...-..+.+
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i 46 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEF 46 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 7889999999999999999999999999999999999876554444
No 45
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=96.72 E-value=0.005 Score=49.23 Aligned_cols=40 Identities=30% Similarity=0.433 Sum_probs=34.1
Q ss_pred CC-CCEEEEEcCCCC-CChHHHHHHHHHHHHCCCEEEEEeCC
Q 043556 1 MS-NPHVLVIPAPAQ-GHVIPLLEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 1 ~~-~~~il~~~~p~~-GH~~P~l~la~~L~~rGh~Vt~~t~~ 40 (166)
|. .+||++++...- ||..+...|+++|.++||+|.+++..
T Consensus 1 ~~~~~rili~t~~~G~GH~~~a~al~~~l~~~g~~~~~~~d~ 42 (380)
T PRK13609 1 MIKNPKVLILTAHYGNGHVQVAKTLEQTFRQKGIKDVIVCDL 42 (380)
T ss_pred CCCCCeEEEEEcCCCchHHHHHHHHHHHHHhcCCCcEEEEEh
Confidence 54 578999988876 99999999999999999987776554
No 46
>PRK10307 putative glycosyl transferase; Provisional
Probab=96.72 E-value=0.025 Score=45.71 Aligned_cols=38 Identities=21% Similarity=0.153 Sum_probs=27.1
Q ss_pred CEEEEEcC---CCCC-ChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 4 PHVLVIPA---PAQG-HVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 4 ~~il~~~~---p~~G-H~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
+||++++. |-.| =-.-+.++++.|.++||+|+++|+..
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~~G~~V~vit~~~ 42 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAARGHEVRVITAPP 42 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHHCCCeEEEEecCC
Confidence 46777763 3222 11235799999999999999999764
No 47
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=96.67 E-value=0.0064 Score=48.23 Aligned_cols=59 Identities=15% Similarity=0.282 Sum_probs=46.7
Q ss_pred CCEEEEEcCCC--CCChHHHHHHHHHHHHC--CCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCC
Q 043556 3 NPHVLVIPAPA--QGHVIPLLEFSQCLANH--GVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGM 69 (166)
Q Consensus 3 ~~~il~~~~p~--~GH~~P~l~la~~L~~r--Gh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~ 69 (166)
++||++++.-. -||+.=++.+|..|.+. |++|+++++......+. ...+++++.+|.-.
T Consensus 9 ~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~--------~~~gVd~V~LPsl~ 71 (400)
T COG4671 9 RPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFP--------GPAGVDFVKLPSLI 71 (400)
T ss_pred cceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCC--------CcccCceEecCceE
Confidence 45999999765 49999999999999997 99999999876544332 12489999988543
No 48
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=96.61 E-value=0.043 Score=42.33 Aligned_cols=30 Identities=17% Similarity=0.302 Sum_probs=26.2
Q ss_pred CCChHHHHHHHHHHHHCCCEEEEEeCCcch
Q 043556 14 QGHVIPLLEFSQCLANHGVRVTFVNSEYNH 43 (166)
Q Consensus 14 ~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~ 43 (166)
-|+-.-...++++|+++||+|+++++....
T Consensus 15 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 44 (359)
T cd03823 15 GGAEVVAHDLAEALAKRGHEVAVLTAGEDP 44 (359)
T ss_pred cchHHHHHHHHHHHHhcCCceEEEeCCCCC
Confidence 478888999999999999999999987543
No 49
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=96.59 E-value=0.088 Score=41.88 Aligned_cols=113 Identities=19% Similarity=0.122 Sum_probs=69.9
Q ss_pred CChHHHHHHHHHHHHCCCEEEEEeCCcch-hHHHhhhccCCCCCCCeeeeecCCCCCCCcCchhHHHHHHHHHhhccHHH
Q 043556 15 GHVIPLLEFSQCLANHGVRVTFVNSEYNH-QRVLKSLEGKNNLEEKIRLVSIPDGMEPWEDRNELGNKLKKILQVMPGNL 93 (166)
Q Consensus 15 GH~~P~l~la~~L~~rGh~Vt~~t~~~~~-~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (166)
-|+.-+-.+.++|.++||+|.+.+-.... ..+... -++.+..+...- .+ -......... ..
T Consensus 11 ~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~--------yg~~y~~iG~~g-~~----~~~Kl~~~~~-----R~ 72 (335)
T PF04007_consen 11 AHVHFFKNIIRELEKRGHEVLITARDKDETEELLDL--------YGIDYIVIGKHG-DS----LYGKLLESIE-----RQ 72 (335)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHH--------cCCCeEEEcCCC-CC----HHHHHHHHHH-----HH
Confidence 49999999999999999999987765432 223333 377777765322 11 1111111111 12
Q ss_pred HHHHHHHhhcCCCCccEEEecCccchHHHHHHHhCCceEEEccccHHHHHHHhccc
Q 043556 94 EELIEEINEKEDEKIDCFIADAYMGWTMRIAEKMKLRRGVVWPSSAASVALCFRIP 149 (166)
Q Consensus 94 ~~ll~~l~~~~~~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~ 149 (166)
.++++.+.+ .+||++|+ .....+..+|.-+|+|.|.|.=+.-+.....+.+|
T Consensus 73 ~~l~~~~~~---~~pDv~is-~~s~~a~~va~~lgiP~I~f~D~e~a~~~~~Lt~P 124 (335)
T PF04007_consen 73 YKLLKLIKK---FKPDVAIS-FGSPEAARVAFGLGIPSIVFNDTEHAIAQNRLTLP 124 (335)
T ss_pred HHHHHHHHh---hCCCEEEe-cCcHHHHHHHHHhCCCeEEEecCchhhccceeehh
Confidence 333333332 58999995 33345777999999999999887766544434444
No 50
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=96.54 E-value=0.033 Score=45.93 Aligned_cols=41 Identities=17% Similarity=0.262 Sum_probs=31.3
Q ss_pred CCCEEEEEcCCC-----CCChHHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 2 SNPHVLVIPAPA-----QGHVIPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 2 ~~~~il~~~~p~-----~GH~~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
+.+||+++..+. -|=-+-+.++++.|.++||+|+++++...
T Consensus 57 ~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~ 102 (465)
T PLN02871 57 RPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEG 102 (465)
T ss_pred CCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 357999885432 23346778999999999999999997643
No 51
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=96.53 E-value=0.041 Score=42.71 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=30.6
Q ss_pred EEEEEcCCC----CCChHHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 5 HVLVIPAPA----QGHVIPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 5 ~il~~~~p~----~GH~~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
||++++... .|+-.-+..+++.|+++||+|++++....
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~ 42 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPN 42 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCC
Confidence 455555443 48999999999999999999999987654
No 52
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=96.47 E-value=0.062 Score=41.15 Aligned_cols=40 Identities=20% Similarity=0.154 Sum_probs=34.1
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchh
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQ 44 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~ 44 (166)
+|++++....|+...+..+++.|.++||+|++++......
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~ 40 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDEL 40 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCcc
Confidence 4777777777899999999999999999999999876543
No 53
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.38 E-value=0.03 Score=43.38 Aligned_cols=29 Identities=21% Similarity=0.205 Sum_probs=26.5
Q ss_pred CCChHHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 14 QGHVIPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 14 ~GH~~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
-|+...+..++++|+++||+|+++++...
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~ 42 (364)
T cd03814 14 NGVVRTLQRLVEHLRARGHEVLVIAPGPF 42 (364)
T ss_pred cceehHHHHHHHHHHHCCCEEEEEeCCch
Confidence 58999999999999999999999998753
No 54
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.19 E-value=0.05 Score=42.05 Aligned_cols=99 Identities=24% Similarity=0.219 Sum_probs=64.1
Q ss_pred CEEEEEcCCC----CCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCCCCCcCchhHH
Q 043556 4 PHVLVIPAPA----QGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGMEPWEDRNELG 79 (166)
Q Consensus 4 ~~il~~~~p~----~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~ 79 (166)
+||+|++-++ .||+.-++.||++|.+||+.+++++......-+...+ .++.+....
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~~~~~~~-------~~f~~~~~~------------- 60 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEAIIHKVY-------EGFKVLEGR------------- 60 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhhhhhhhh-------hhccceeee-------------
Confidence 4778877665 6999999999999999999999998876443222111 112111000
Q ss_pred HHHHHHHhhccHHHHHHHHHHhhcCCCCccEEEecCccch---HHHHHHHhCCceEEEccccHHH
Q 043556 80 NKLKKILQVMPGNLEELIEEINEKEDEKIDCFIADAYMGW---TMRIAEKMKLRRGVVWPSSAAS 141 (166)
Q Consensus 80 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~iI~D~~~~~---~~~vA~~l~iP~i~~~~~~~~~ 141 (166)
... .+.+ .|+|++|.|..... ...+.++.+.+.+.|=.-..-.
T Consensus 61 --------~~n-----~ik~------~k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~~~ 106 (318)
T COG3980 61 --------GNN-----LIKE------EKFDLLIFDSYGLNADDFKLIKEEAGSKILIFDDENAKS 106 (318)
T ss_pred --------ccc-----cccc------ccCCEEEEeccCCCHHHHHHHHHHhCCcEEEecCCCccc
Confidence 000 2221 68999999976533 4668888898888876554433
No 55
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.08 E-value=0.097 Score=41.14 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=30.3
Q ss_pred EEEEEcCCCC-CChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 5 HVLVIPAPAQ-GHVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 5 ~il~~~~p~~-GH~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
||++++.|.. |.-.-..++++.|+++||+|++++...
T Consensus 2 ki~~~~~p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~ 39 (371)
T cd04962 2 KIGIVCYPTYGGSGVVATELGKALARRGHEVHFITSSR 39 (371)
T ss_pred ceeEEEEeCCCCccchHHHHHHHHHhcCCceEEEecCC
Confidence 6677766554 677889999999999999999998754
No 56
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=95.86 E-value=0.19 Score=44.37 Aligned_cols=124 Identities=16% Similarity=0.207 Sum_probs=66.7
Q ss_pred CCEEEEEcCCC-------------CCChHHHHHHHHH--------HHHCCC----EEEEEeCCcchhHHHhhhccC---C
Q 043556 3 NPHVLVIPAPA-------------QGHVIPLLEFSQC--------LANHGV----RVTFVNSEYNHQRVLKSLEGK---N 54 (166)
Q Consensus 3 ~~~il~~~~p~-------------~GH~~P~l~la~~--------L~~rGh----~Vt~~t~~~~~~~~~~~~~~~---~ 54 (166)
..+|++++.-+ -|+..=.++++++ |+++|| +|+++|-......- ..+... .
T Consensus 255 ~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~-~~~~~~~e~~ 333 (784)
T TIGR02470 255 VFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEG-TTCNQRLEKV 333 (784)
T ss_pred cceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCccc-cccccccccc
Confidence 36777776655 3555566667776 578999 77788854321110 000000 0
Q ss_pred CCCCCeeeeecCCCCCCCc------CchhHHHHHHHHHhhccHHHHHHHHHHhhcCCCCccEEEecCccc--hHHHHHHH
Q 043556 55 NLEEKIRLVSIPDGMEPWE------DRNELGNKLKKILQVMPGNLEELIEEINEKEDEKIDCFIADAYMG--WTMRIAEK 126 (166)
Q Consensus 55 ~~~~~i~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~iI~D~~~~--~~~~vA~~ 126 (166)
...++.++..+|-+-+... ...++..++..|.+. ..+.+.... ..+||+|++-.... .+..++++
T Consensus 334 ~~~~~~~I~rvp~g~~~~~~~~~~i~k~~l~p~l~~f~~~---~~~~~~~~~----~~~pDlIHahy~d~glva~lla~~ 406 (784)
T TIGR02470 334 YGTEHAWILRVPFRTENGIILRNWISRFEIWPYLETFAED---AEKEILAEL----QGKPDLIIGNYSDGNLVASLLARK 406 (784)
T ss_pred cCCCceEEEEecCCCCcccccccccCHHHHHHHHHHHHHH---HHHHHHHhc----CCCCCEEEECCCchHHHHHHHHHh
Confidence 1124677666664432210 123344444444432 222232221 24799999876443 36779999
Q ss_pred hCCceEEE
Q 043556 127 MKLRRGVV 134 (166)
Q Consensus 127 l~iP~i~~ 134 (166)
+|||.+..
T Consensus 407 lgVP~v~t 414 (784)
T TIGR02470 407 LGVTQCTI 414 (784)
T ss_pred cCCCEEEE
Confidence 99996654
No 57
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=95.77 E-value=0.25 Score=32.91 Aligned_cols=39 Identities=18% Similarity=0.229 Sum_probs=34.1
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcch
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNH 43 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~ 43 (166)
|+++.+.++..|-....-++..|.++|++|.++...-..
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~ 39 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPP 39 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCH
Confidence 589999999999999999999999999999887655433
No 58
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=95.73 E-value=0.1 Score=37.43 Aligned_cols=94 Identities=12% Similarity=0.077 Sum_probs=52.4
Q ss_pred HCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCCCCCcCchhHHHHHHHHHhhccHHHHHHHHHHhhcCCCCc
Q 043556 29 NHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGMEPWEDRNELGNKLKKILQVMPGNLEELIEEINEKEDEKI 108 (166)
Q Consensus 29 ~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 108 (166)
++||+|++++........ ++++...+................++....... .+.+.+.+|++.+ ..|
T Consensus 1 q~gh~v~fl~~~~~~~~~-----------~GV~~~~y~~~~~~~~~~~~~~~~~e~~~~rg~-av~~a~~~L~~~G-f~P 67 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP-----------PGVRVVRYRPPRGPTPGTHPYVRDFEAAVLRGQ-AVARAARQLRAQG-FVP 67 (171)
T ss_pred CCCCEEEEEecCCCCCCC-----------CCcEEEEeCCCCCCCCCCCcccccHHHHHHHHH-HHHHHHHHHHHcC-CCC
Confidence 489999999954332111 267666553211111111111111111111122 2344455555543 789
Q ss_pred cEEEecCccchHHHHHHHh-CCceEEEc
Q 043556 109 DCFIADAYMGWTMRIAEKM-KLRRGVVW 135 (166)
Q Consensus 109 d~iI~D~~~~~~~~vA~~l-~iP~i~~~ 135 (166)
|+||.-.....+.-+-+.+ ++|.+.+.
T Consensus 68 DvI~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 68 DVIIAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred CEEEEcCCcchhhhHHHhCCCCcEEEEE
Confidence 9999999888888888888 88888754
No 59
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=95.65 E-value=0.36 Score=38.36 Aligned_cols=38 Identities=21% Similarity=0.206 Sum_probs=28.2
Q ss_pred CEEEEEcCC-CCCCh-HHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 4 PHVLVIPAP-AQGHV-IPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 4 ~~il~~~~p-~~GH~-~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
+||+++... ..|=. .-+..|+++|+++||+|+++++..
T Consensus 1 mkIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~~ 40 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSHH 40 (392)
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCCC
Confidence 367777543 23433 456999999999999999999753
No 60
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=95.45 E-value=0.21 Score=38.54 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=27.1
Q ss_pred CCCCChHHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 12 PAQGHVIPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 12 p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
...|+-.-...+++.|.++||+|+++++...
T Consensus 12 ~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (374)
T cd03817 12 QVNGVATSIRRLAEELEKRGHEVYVVAPSYP 42 (374)
T ss_pred CCCCeehHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 4468999999999999999999999987653
No 61
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=95.27 E-value=0.37 Score=43.83 Aligned_cols=123 Identities=14% Similarity=0.068 Sum_probs=68.1
Q ss_pred CChHHHHHHHHHHHHCC--CEEEEEeCCcchhHHHhhhccC---------------CCCCCCeeeeecCCCCCCCc-Cch
Q 043556 15 GHVIPLLEFSQCLANHG--VRVTFVNSEYNHQRVLKSLEGK---------------NNLEEKIRLVSIPDGMEPWE-DRN 76 (166)
Q Consensus 15 GH~~P~l~la~~L~~rG--h~Vt~~t~~~~~~~~~~~~~~~---------------~~~~~~i~~~~l~~~~~~~~-~~~ 76 (166)
|+..=.++||++|+++| |+|.++|-....+.....+..+ ....++..++.+|-+-.... ...
T Consensus 196 Gq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~~~~~~~~~~~g~rIvRip~GP~~~~l~Ke 275 (1050)
T TIGR02468 196 GQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSENDGDEMGESSGAYIIRIPFGPRDKYIPKE 275 (1050)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccccccccccccCCCCeEEEEeccCCCCCCcCHH
Confidence 56666799999999998 8999998654322110011100 01224777777775432111 123
Q ss_pred hHHHHHHHHHhhccHHHHH----HHHHHhhcCCCCccEEEecCccc--hHHHHHHHhCCceEEEccc
Q 043556 77 ELGNKLKKILQVMPGNLEE----LIEEINEKEDEKIDCFIADAYMG--WTMRIAEKMKLRRGVVWPS 137 (166)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~----ll~~l~~~~~~~~d~iI~D~~~~--~~~~vA~~l~iP~i~~~~~ 137 (166)
.+..++..|.+.+...+.+ +.+++.......||+|-+-.... .+..+++.+|||.+...-+
T Consensus 276 ~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG~aa~~L~~~lgVP~V~T~HS 342 (1050)
T TIGR02468 276 ELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAGDSAALLSGALNVPMVLTGHS 342 (1050)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHHHHHHHHHHhhCCCEEEECcc
Confidence 3455555555443322222 22222110012489999775442 3677899999998886655
No 62
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=95.22 E-value=0.23 Score=39.96 Aligned_cols=101 Identities=17% Similarity=0.251 Sum_probs=53.8
Q ss_pred CChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCCCCCcCchhHHHHHHHHHhhccHHHH
Q 043556 15 GHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGMEPWEDRNELGNKLKKILQVMPGNLE 94 (166)
Q Consensus 15 GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (166)
|--.-...+++.|+++||+|+++++.......... ...++.+..+|...... ......... ....++
T Consensus 15 G~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~------~~~~i~v~~~p~~~~~~--~~~~~~~~~-----~~~~l~ 81 (398)
T cd03796 15 GVETHIYQLSQCLIKRGHKVVVITHAYGNRVGIRY------LTNGLKVYYLPFVVFYN--QSTLPTFFG-----TFPLLR 81 (398)
T ss_pred cHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCccc------ccCceeEEEecceeccC--Cccccchhh-----hHHHHH
Confidence 44577899999999999999999975321110000 01355555554211000 000101111 001233
Q ss_pred HHHHHHhhcCCCCccEEEecC-ccch---HHHHHHHhCCceEEE
Q 043556 95 ELIEEINEKEDEKIDCFIADA-YMGW---TMRIAEKMKLRRGVV 134 (166)
Q Consensus 95 ~ll~~l~~~~~~~~d~iI~D~-~~~~---~~~vA~~l~iP~i~~ 134 (166)
..+++ .+||+|-.-. ...+ +..+++.+++|++..
T Consensus 82 ~~~~~------~~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t 119 (398)
T cd03796 82 NILIR------ERITIVHGHQAFSALAHEALLHARTMGLKTVFT 119 (398)
T ss_pred HHHHh------cCCCEEEECCCCchHHHHHHHHhhhcCCcEEEE
Confidence 33332 5799998554 2222 455688899998874
No 63
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=95.12 E-value=0.67 Score=36.03 Aligned_cols=98 Identities=21% Similarity=0.211 Sum_probs=55.6
Q ss_pred CCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCCCCCcCchhHHHHHHHHHhhccHHH
Q 043556 14 QGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGMEPWEDRNELGNKLKKILQVMPGNL 93 (166)
Q Consensus 14 ~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (166)
-|--.-...++++|+++||+|+++++.......... .++++..++.. . ......+..+. .+
T Consensus 10 gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~--------~~~~~~~~~~~--~----~~~~~~~~~~~-----~l 70 (355)
T cd03819 10 GGVERGTLELARALVERGHRSLVASAGGRLVAELEA--------EGSRHIKLPFI--S----KNPLRILLNVA-----RL 70 (355)
T ss_pred CcHHHHHHHHHHHHHHcCCEEEEEcCCCchHHHHHh--------cCCeEEEcccc--c----cchhhhHHHHH-----HH
Confidence 355577889999999999999999875432221111 25555544311 1 01111111111 12
Q ss_pred HHHHHHHhhcCCCCccEEEecCcc-ch-HHHHHHHhCCceEEEcc
Q 043556 94 EELIEEINEKEDEKIDCFIADAYM-GW-TMRIAEKMKLRRGVVWP 136 (166)
Q Consensus 94 ~~ll~~l~~~~~~~~d~iI~D~~~-~~-~~~vA~~l~iP~i~~~~ 136 (166)
..++++ .++|+|+..... .+ +...+...++|.+..+-
T Consensus 71 ~~~~~~------~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~h 109 (355)
T cd03819 71 RRLIRE------EKVDIVHARSRAPAWSAYLAARRTRPPFVTTVH 109 (355)
T ss_pred HHHHHH------cCCCEEEECCCchhHHHHHHHHhcCCCEEEEeC
Confidence 333332 589999976533 34 34566778999887544
No 64
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=95.03 E-value=0.38 Score=38.58 Aligned_cols=112 Identities=14% Similarity=0.135 Sum_probs=58.6
Q ss_pred CCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCCCCCcCchhHHHHHHHHHhhccHHH
Q 043556 14 QGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGMEPWEDRNELGNKLKKILQVMPGNL 93 (166)
Q Consensus 14 ~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (166)
-|--.-..+|+++|.++||+|+++++.......... ...+++++..++...-..............+. ...+
T Consensus 20 GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 91 (405)
T TIGR03449 20 GGMNVYILETATELARRGIEVDIFTRATRPSQPPVV-----EVAPGVRVRNVVAGPYEGLDKEDLPTQLCAFT---GGVL 91 (405)
T ss_pred CCceehHHHHHHHHhhCCCEEEEEecccCCCCCCcc-----ccCCCcEEEEecCCCcccCCHHHHHHHHHHHH---HHHH
Confidence 466688899999999999999999975321110000 01136676655421100000011111111111 1122
Q ss_pred HHHHHHHhhcCCCCccEEEecCcc-c-hHHHHHHHhCCceEEEccc
Q 043556 94 EELIEEINEKEDEKIDCFIADAYM-G-WTMRIAEKMKLRRGVVWPS 137 (166)
Q Consensus 94 ~~ll~~l~~~~~~~~d~iI~D~~~-~-~~~~vA~~l~iP~i~~~~~ 137 (166)
+.+++.. ..++|+|-.-... . ++..+++.+++|++..+-.
T Consensus 92 ~~~~~~~----~~~~Diih~h~~~~~~~~~~~~~~~~~p~v~t~h~ 133 (405)
T TIGR03449 92 RAEARHE----PGYYDLIHSHYWLSGQVGWLLRDRWGVPLVHTAHT 133 (405)
T ss_pred HHHhhcc----CCCCCeEEechHHHHHHHHHHHHhcCCCEEEeccc
Confidence 3333321 1479998765432 2 3455677899999876543
No 65
>PLN00142 sucrose synthase
Probab=94.92 E-value=0.23 Score=44.02 Aligned_cols=108 Identities=16% Similarity=0.168 Sum_probs=57.1
Q ss_pred HHHHHHHHCCCEEE----EEeCCcchhHHHhhhcc---CCCCCCCeeeeecCCCCCCCc-----CchhHHHHHHHHHhhc
Q 043556 22 EFSQCLANHGVRVT----FVNSEYNHQRVLKSLEG---KNNLEEKIRLVSIPDGMEPWE-----DRNELGNKLKKILQVM 89 (166)
Q Consensus 22 ~la~~L~~rGh~Vt----~~t~~~~~~~~~~~~~~---~~~~~~~i~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~ 89 (166)
+++++|+++||+|+ ++|=-..... ...+.. .....++..+..+|-+-+.+. ....+..++..|.+.
T Consensus 319 el~~~l~~~G~~v~~~v~i~TR~i~~~~-~~~~~~~~e~v~~~~~~~I~rvP~g~~~~~l~~~i~ke~l~p~L~~f~~~- 396 (815)
T PLN00142 319 EMLLRIKQQGLDIKPQILIVTRLIPDAK-GTTCNQRLEKVSGTEHSHILRVPFRTEKGILRKWISRFDVWPYLETFAED- 396 (815)
T ss_pred HHHHHHHhcCCCccceeEEEEeccCCcc-CCcccCcceeccCCCceEEEecCCCCCccccccccCHHHHHHHHHHHHHH-
Confidence 46688999999875 6664221110 000000 001123566666664432111 123344444444432
Q ss_pred cHHHHHHHHHHhhcCCCCccEEEecCccc--hHHHHHHHhCCceEEEccc
Q 043556 90 PGNLEELIEEINEKEDEKIDCFIADAYMG--WTMRIAEKMKLRRGVVWPS 137 (166)
Q Consensus 90 ~~~~~~ll~~l~~~~~~~~d~iI~D~~~~--~~~~vA~~l~iP~i~~~~~ 137 (166)
..+.+.+.. ..+||+|.+-.-.. .+..+++++|||.+...-+
T Consensus 397 --~~~~~~~~~----~~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~Hs 440 (815)
T PLN00142 397 --AASEILAEL----QGKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAHA 440 (815)
T ss_pred --HHHHHHHhc----CCCCCEEEECCccHHHHHHHHHHHhCCCEEEEccc
Confidence 222333321 24799999886543 3678999999999986653
No 66
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=94.88 E-value=0.41 Score=39.24 Aligned_cols=113 Identities=17% Similarity=0.165 Sum_probs=56.0
Q ss_pred ChHHHHHHHHHHHHCCC--EEEEEeCCcchhHHHhhhc-cCCCCCCCeeeeecCCCCCCCcCchhHHHHHHHHHhhccHH
Q 043556 16 HVIPLLEFSQCLANHGV--RVTFVNSEYNHQRVLKSLE-GKNNLEEKIRLVSIPDGMEPWEDRNELGNKLKKILQVMPGN 92 (166)
Q Consensus 16 H~~P~l~la~~L~~rGh--~Vt~~t~~~~~~~~~~~~~-~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (166)
=-.-+.+|+++|+++|| +|+++|...........+. .......++++..++-.-...........++..+ ...
T Consensus 28 ~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~~~~~~gv~v~r~~~~~~~~~~~~~~~~~~~~~----~~~ 103 (439)
T TIGR02472 28 QTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPIERIAPGARIVRLPFGPRRYLRKELLWPYLDEL----ADN 103 (439)
T ss_pred cchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCCeeEeCCCcEEEEecCCCCCCcChhhhhhhHHHH----HHH
Confidence 33567899999999997 9999996421100000000 0001124677666653211100111111111111 112
Q ss_pred HHHHHHHHhhcCCCCccEEEecCcc-c-hHHHHHHHhCCceEEEcc
Q 043556 93 LEELIEEINEKEDEKIDCFIADAYM-G-WTMRIAEKMKLRRGVVWP 136 (166)
Q Consensus 93 ~~~ll~~l~~~~~~~~d~iI~D~~~-~-~~~~vA~~l~iP~i~~~~ 136 (166)
+..++++. ..+||+|-+-... . .+..+++.+++|++...-
T Consensus 104 l~~~~~~~----~~~~DvIH~h~~~~~~~~~~~~~~~~~p~V~t~H 145 (439)
T TIGR02472 104 LLQHLRQQ----GHLPDLIHAHYADAGYVGARLSRLLGVPLIFTGH 145 (439)
T ss_pred HHHHHHHc----CCCCCEEEEcchhHHHHHHHHHHHhCCCEEEecc
Confidence 33334321 1369999976532 2 345677889999977544
No 67
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=94.85 E-value=0.27 Score=37.94 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=29.9
Q ss_pred CEEEEEcCC-------CC-CChHHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 4 PHVLVIPAP-------AQ-GHVIPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 4 ~~il~~~~p-------~~-GH~~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
+||++++.. .. |--.-...+++.|.++||+|++++....
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~ 47 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDS 47 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCC
Confidence 477777643 23 4447789999999999999999997643
No 68
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=94.71 E-value=0.81 Score=33.57 Aligned_cols=44 Identities=14% Similarity=0.095 Sum_probs=37.2
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHH
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRV 46 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~ 46 (166)
+.++++.+.++..|-....-++..|.++|++|+++...-..+.+
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l 125 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEF 125 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 46999999999999999999999999999999988755433333
No 69
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=94.23 E-value=0.99 Score=33.07 Aligned_cols=45 Identities=18% Similarity=0.048 Sum_probs=39.0
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHH
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVL 47 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~ 47 (166)
+.+|++.+.++..|-....-++..|.++|++|+++...-..+.+.
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v 128 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVV 128 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHH
Confidence 479999999999999999999999999999999998765544443
No 70
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=94.06 E-value=0.73 Score=33.04 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=23.6
Q ss_pred EEEEcCCCCCChHHHHHHHHHH-HHCCCEEE-EEeCCc
Q 043556 6 VLVIPAPAQGHVIPLLEFSQCL-ANHGVRVT-FVNSEY 41 (166)
Q Consensus 6 il~~~~p~~GH~~P~l~la~~L-~~rGh~Vt-~~t~~~ 41 (166)
|+++...| ||..-|+.|.+.+ .++....+ +++..+
T Consensus 1 Il~v~gsG-GHt~eml~L~~~~~~~~~~~~~~ivt~~d 37 (170)
T PF08660_consen 1 ILVVLGSG-GHTAEMLRLLKALDNDRYQPRTYIVTEGD 37 (170)
T ss_pred CEEEEcCc-HHHHHHHHHHHHhhhhcCCCcEEEEEcCC
Confidence 35555555 9999999999999 44444444 444443
No 71
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=93.88 E-value=0.76 Score=35.77 Aligned_cols=45 Identities=22% Similarity=0.243 Sum_probs=30.7
Q ss_pred CChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecC
Q 043556 15 GHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIP 66 (166)
Q Consensus 15 GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 66 (166)
|=-.-...++++|.++||+|++++........... ..++++..++
T Consensus 16 G~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~~~~-------~~~i~~~~~~ 60 (363)
T cd04955 16 GFETFVEELAPRLVARGHEVTVYCRSPYPKQKETE-------YNGVRLIHIP 60 (363)
T ss_pred cHHHHHHHHHHHHHhcCCCEEEEEccCCCCCcccc-------cCCceEEEcC
Confidence 44466789999999999999999976543221111 1467776665
No 72
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=93.75 E-value=0.66 Score=35.35 Aligned_cols=30 Identities=27% Similarity=0.331 Sum_probs=26.8
Q ss_pred CCChHHHHHHHHHHHHCCCEEEEEeCCcch
Q 043556 14 QGHVIPLLEFSQCLANHGVRVTFVNSEYNH 43 (166)
Q Consensus 14 ~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~ 43 (166)
-|+..-+..+++.|.+.||+|++++.....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~ 43 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDGG 43 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCCC
Confidence 588999999999999999999999987543
No 73
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=93.18 E-value=0.37 Score=30.90 Aligned_cols=85 Identities=16% Similarity=0.188 Sum_probs=47.7
Q ss_pred HHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCCCCCcCchhHHHHHHHHHhhccHHHHHHHHH
Q 043556 20 LLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGMEPWEDRNELGNKLKKILQVMPGNLEELIEE 99 (166)
Q Consensus 20 ~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 99 (166)
++++++.|++.|++ +++++...+.+.++ ++....+.......+...+-. .+.++++.
T Consensus 2 ~~~~a~~l~~lG~~--i~AT~gTa~~L~~~---------Gi~~~~v~~~~~~~~~~~g~~------------~i~~~i~~ 58 (95)
T PF02142_consen 2 IVPLAKRLAELGFE--IYATEGTAKFLKEH---------GIEVTEVVNKIGEGESPDGRV------------QIMDLIKN 58 (95)
T ss_dssp HHHHHHHHHHTTSE--EEEEHHHHHHHHHT---------T--EEECCEEHSTG-GGTHCH------------HHHHHHHT
T ss_pred HHHHHHHHHHCCCE--EEEChHHHHHHHHc---------CCCceeeeeecccCccCCchh------------HHHHHHHc
Confidence 57899999999976 67788777777653 777544432111100000000 23333332
Q ss_pred HhhcCCCCccEEEecC--ccc----h---HHHHHHHhCCceEE
Q 043556 100 INEKEDEKIDCFIADA--YMG----W---TMRIAEKMKLRRGV 133 (166)
Q Consensus 100 l~~~~~~~~d~iI~D~--~~~----~---~~~vA~~l~iP~i~ 133 (166)
.++|+||.-+ ... . ...+|.+++||+++
T Consensus 59 ------~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~T 95 (95)
T PF02142_consen 59 ------GKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLFT 95 (95)
T ss_dssp ------TSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEEC
T ss_pred ------CCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCcC
Confidence 6899998544 221 1 25679999999864
No 74
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=92.82 E-value=1.3 Score=33.59 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=24.9
Q ss_pred CCChHHHHHHHHHHHHCCCEEEEEeCCcch
Q 043556 14 QGHVIPLLEFSQCLANHGVRVTFVNSEYNH 43 (166)
Q Consensus 14 ~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~ 43 (166)
-|...-+..+++.|+++||+|++++.....
T Consensus 13 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 42 (348)
T cd03820 13 GGAERVLSNLANALAEKGHEVTIISLDKGE 42 (348)
T ss_pred CChHHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 355577889999999999999999987643
No 75
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=92.79 E-value=1.8 Score=33.64 Aligned_cols=38 Identities=13% Similarity=0.245 Sum_probs=29.4
Q ss_pred EEEEcC--CCCCChHHHHHHHHHHHHCCCEEEEEeCCcch
Q 043556 6 VLVIPA--PAQGHVIPLLEFSQCLANHGVRVTFVNSEYNH 43 (166)
Q Consensus 6 il~~~~--p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~ 43 (166)
|+++.. ..-|.-.-+..+++.|.++||+|++++.....
T Consensus 2 Il~~~~~~~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~ 41 (358)
T cd03812 2 ILHIVGTMNRGGIETFIMNYYRNLDRSKIQFDFLVTSKEE 41 (358)
T ss_pred EEEEeCCCCCccHHHHHHHHHHhcCccceEEEEEEeCCCC
Confidence 444444 34578888999999999999999999976543
No 76
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=92.43 E-value=3.2 Score=30.36 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=34.4
Q ss_pred CCCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeC
Q 043556 2 SNPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNS 39 (166)
Q Consensus 2 ~~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~ 39 (166)
++..|.+++.++.|=....+.++.+.+.+|++|.++=-
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQF 58 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQF 58 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEE
Confidence 46789999999999999999999999999999998743
No 77
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=92.37 E-value=3.1 Score=32.17 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=26.3
Q ss_pred CCCChHHHHHHHHHHHHCCCEEEEEeCCcch
Q 043556 13 AQGHVIPLLEFSQCLANHGVRVTFVNSEYNH 43 (166)
Q Consensus 13 ~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~ 43 (166)
.-|.-.-+..+++.|.++||+|++++.....
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 43 (357)
T cd03795 13 RGGIEQVIRDLAEGLAARGIEVAVLCASPEP 43 (357)
T ss_pred CCcHHHHHHHHHHHHHhCCCceEEEecCCCC
Confidence 4477888899999999999999999887543
No 78
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=91.78 E-value=2.8 Score=31.19 Aligned_cols=44 Identities=14% Similarity=0.121 Sum_probs=38.4
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHH
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRV 46 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~ 46 (166)
+.++++.+.++..|-....=++..|.++|++|+++...-..+.+
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~ 131 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKI 131 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHH
Confidence 47999999999999999999999999999999999876544444
No 79
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=91.77 E-value=0.24 Score=34.22 Aligned_cols=28 Identities=29% Similarity=0.405 Sum_probs=22.5
Q ss_pred CChHHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 15 GHVIPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 15 GH~~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
|=-.-+..|+++|+++||+|+++++...
T Consensus 13 G~e~~~~~l~~~l~~~G~~v~v~~~~~~ 40 (177)
T PF13439_consen 13 GAERVVLNLARALAKRGHEVTVVSPGVK 40 (177)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEESS-T
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEEcCCC
Confidence 5557789999999999999999987754
No 80
>PLN02846 digalactosyldiacylglycerol synthase
Probab=91.23 E-value=0.41 Score=39.80 Aligned_cols=39 Identities=23% Similarity=0.291 Sum_probs=31.8
Q ss_pred CCEEEEEcCCCC----CChHHHHHHHHHHHHCC-CEEEEEeCCc
Q 043556 3 NPHVLVIPAPAQ----GHVIPLLEFSQCLANHG-VRVTFVNSEY 41 (166)
Q Consensus 3 ~~~il~~~~p~~----GH~~P~l~la~~L~~rG-h~Vt~~t~~~ 41 (166)
++||++++-... |=..-.+.++..|+++| |+|+++.+..
T Consensus 4 ~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~ 47 (462)
T PLN02846 4 KQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWL 47 (462)
T ss_pred CCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCC
Confidence 689999987654 55466778888999999 8999999864
No 81
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=91.17 E-value=2.4 Score=30.96 Aligned_cols=44 Identities=18% Similarity=0.166 Sum_probs=32.9
Q ss_pred CCccEEE-ecCcc-chHHHHHHHhCCceEEEccccHHHHHHHhccc
Q 043556 106 EKIDCFI-ADAYM-GWTMRIAEKMKLRRGVVWPSSAASVALCFRIP 149 (166)
Q Consensus 106 ~~~d~iI-~D~~~-~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~ 149 (166)
..||+|| .|+.. ..+..-|.++|||.|.+.-+....-.+.+.+|
T Consensus 126 ~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn~~~~~i~ypIP 171 (193)
T cd01425 126 RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTNCDPDLIDYPIP 171 (193)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCCCCCccceEEee
Confidence 5689776 77755 35778899999999999888765555555555
No 82
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=91.15 E-value=6.4 Score=31.17 Aligned_cols=114 Identities=18% Similarity=0.082 Sum_probs=71.2
Q ss_pred CCCChHHHHHHHHHHHHCCCEEEEEeCCc-chhHHHhhhccCCCCCCCeeeeecCCCCCCCcCchhHH-HHHHHHHhhcc
Q 043556 13 AQGHVIPLLEFSQCLANHGVRVTFVNSEY-NHQRVLKSLEGKNNLEEKIRLVSIPDGMEPWEDRNELG-NKLKKILQVMP 90 (166)
Q Consensus 13 ~~GH~~P~l~la~~L~~rGh~Vt~~t~~~-~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~ 90 (166)
-.-|+.-+-.+-++|..+||+|.+.+-+. ....+.+.+ ||.+..+...-. ..+. .....+.+.
T Consensus 9 n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~y--------gf~~~~Igk~g~-----~tl~~Kl~~~~eR~-- 73 (346)
T COG1817 9 NPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLY--------GFPYKSIGKHGG-----VTLKEKLLESAERV-- 73 (346)
T ss_pred CcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHh--------CCCeEeecccCC-----ccHHHHHHHHHHHH--
Confidence 34577888999999999999998765443 233333443 777777653321 1122 222221111
Q ss_pred HHHHHHHHHHhhcCCCCccEEEecCccchHHHHHHHhCCceEEEccccHHHHHHHhcc
Q 043556 91 GNLEELIEEINEKEDEKIDCFIADAYMGWTMRIAEKMKLRRGVVWPSSAASVALCFRI 148 (166)
Q Consensus 91 ~~~~~ll~~l~~~~~~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~ 148 (166)
-.+.++..+ .+||+.+. -....+.-+|--+|+|.|.|.-+.-+-...-+-+
T Consensus 74 ~~L~ki~~~------~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ehA~~qnkl~~ 124 (346)
T COG1817 74 YKLSKIIAE------FKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEHAEAQNKLTL 124 (346)
T ss_pred HHHHHHHhh------cCCceEee-cCCcchhhHHhhcCCceEEecCChhHHHHhhcch
Confidence 123444433 68999998 5566788999999999999987776655543333
No 83
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=90.94 E-value=1.4 Score=35.84 Aligned_cols=96 Identities=7% Similarity=0.035 Sum_probs=54.2
Q ss_pred EEcCCCCCChHHHHHHHHHHHHCCCE--EEEEeC-CcchhHHHhhhccCCCCCCCeeeeecCCCCCCCcCchhHHHHHHH
Q 043556 8 VIPAPAQGHVIPLLEFSQCLANHGVR--VTFVNS-EYNHQRVLKSLEGKNNLEEKIRLVSIPDGMEPWEDRNELGNKLKK 84 (166)
Q Consensus 8 ~~~~p~~GH~~P~l~la~~L~~rGh~--Vt~~t~-~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 84 (166)
-+=..+.|.+.-..+|+++|.+++++ |.+.+. ....+.+.... .+++....+|-+.+
T Consensus 54 W~Ha~s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~~~------~~~~~~~~~P~d~~-------------- 113 (425)
T PRK05749 54 WFHAVSVGETRAAIPLIRALRKRYPDLPILVTTMTPTGSERAQALF------GDDVEHRYLPYDLP-------------- 113 (425)
T ss_pred EEEeCCHHHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHhc------CCCceEEEecCCcH--------------
Confidence 34445669999999999999998755 332221 21222222221 12455455553221
Q ss_pred HHhhccHHHHHHHHHHhhcCCCCccEEEecC--ccchHHHHHHHhCCceEEEc
Q 043556 85 ILQVMPGNLEELIEEINEKEDEKIDCFIADA--YMGWTMRIAEKMKLRRGVVW 135 (166)
Q Consensus 85 ~~~~~~~~~~~ll~~l~~~~~~~~d~iI~D~--~~~~~~~vA~~l~iP~i~~~ 135 (166)
..++.+++. .+||+++.-- +.+.....+++.|+|.+...
T Consensus 114 ------~~~~~~l~~------~~Pd~v~~~~~~~~~~~l~~~~~~~ip~vl~~ 154 (425)
T PRK05749 114 ------GAVRRFLRF------WRPKLVIIMETELWPNLIAELKRRGIPLVLAN 154 (425)
T ss_pred ------HHHHHHHHh------hCCCEEEEEecchhHHHHHHHHHCCCCEEEEe
Confidence 124445554 5789888432 22334456788999999864
No 84
>PLN02275 transferase, transferring glycosyl groups
Probab=90.81 E-value=7.2 Score=31.15 Aligned_cols=126 Identities=12% Similarity=-0.002 Sum_probs=66.1
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCC-EEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCCCCCcCchhHHHH
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGV-RVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGMEPWEDRNELGNK 81 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh-~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 81 (166)
+.++.++..+-.|.-.-+..+++.|+++|| +|++++........+.. ...++++..++. .+...........
T Consensus 4 ~~~~~~~~~~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~~------~~~~v~v~r~~~-~~~~~~~~~~~~~ 76 (371)
T PLN02275 4 RGRAAVVVLGDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPALL------NHPSIHIHLMVQ-PRLLQRLPRVLYA 76 (371)
T ss_pred ccEEEEEEecCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHh------cCCcEEEEECCC-cccccccccchHH
Confidence 456777777888999999999999999986 79999865432211110 113677777653 1111011111111
Q ss_pred HHHHHhhccHHHHHHHHHHhhcCCCCccEEEec-Cccc----hHHHHHHHhCCceEEEccc
Q 043556 82 LKKILQVMPGNLEELIEEINEKEDEKIDCFIAD-AYMG----WTMRIAEKMKLRRGVVWPS 137 (166)
Q Consensus 82 ~~~~~~~~~~~~~~ll~~l~~~~~~~~d~iI~D-~~~~----~~~~vA~~l~iP~i~~~~~ 137 (166)
+..+... .-.+..++..+... ..+||+|++- .... .+..++...++|.+..+..
T Consensus 77 ~~~~~~~-~~~~~~~~~~~~~~-~~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 135 (371)
T PLN02275 77 LALLLKV-AIQFLMLLWFLCVK-IPRPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWHN 135 (371)
T ss_pred HHHHHHH-HHHHHHHHHHHHhh-CCCCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcCC
Confidence 1111100 00111122111000 2689998864 2221 2334566789999886554
No 85
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=90.70 E-value=6.2 Score=30.29 Aligned_cols=41 Identities=24% Similarity=0.316 Sum_probs=29.8
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhH
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQR 45 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~ 45 (166)
++||++..=-|. |---+..|.+.|.+.| +|+++++...+..
T Consensus 5 ~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg 45 (257)
T PRK13932 5 KPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHSG 45 (257)
T ss_pred CCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCCC
Confidence 578887766553 2345778888998888 7999998875544
No 86
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=90.66 E-value=0.48 Score=36.86 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=32.0
Q ss_pred CEEEEEcCCC--CCChHHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 4 PHVLVIPAPA--QGHVIPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 4 ~~il~~~~p~--~GH~~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
+||+++.... .|+-.-...++++|.++||+|++++....
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~ 41 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK 41 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc
Confidence 3677776543 58889999999999999999999987653
No 87
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=90.52 E-value=0.33 Score=37.71 Aligned_cols=36 Identities=11% Similarity=0.225 Sum_probs=28.7
Q ss_pred EEEEcCC--CCCChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 6 VLVIPAP--AQGHVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 6 il~~~~p--~~GH~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
|+++... .-|+......+++.|.++||+|++++...
T Consensus 2 il~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~ 39 (360)
T cd04951 2 ILYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLTG 39 (360)
T ss_pred eEEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEeC
Confidence 5555443 35889999999999999999999997543
No 88
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=90.38 E-value=6.1 Score=31.74 Aligned_cols=116 Identities=9% Similarity=0.113 Sum_probs=60.6
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHC-CCEEEEEeCCcchhH-H---HhhhccCCCCCCCeeeee-cCCCCCCCcCchhH
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANH-GVRVTFVNSEYNHQR-V---LKSLEGKNNLEEKIRLVS-IPDGMEPWEDRNEL 78 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~r-Gh~Vt~~t~~~~~~~-~---~~~~~~~~~~~~~i~~~~-l~~~~~~~~~~~~~ 78 (166)
||++ -++++-.+.=|-++.++|.++ ++++.++.+...... . ..... ..++.... +.-.... ....+.
T Consensus 2 ki~~-v~GtRpe~iklapv~~~l~~~~~~~~~lv~tGqH~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~ 74 (365)
T TIGR03568 2 KICV-VTGTRADYGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIE-----KDGFDIDEKIEILLDS-DSNAGM 74 (365)
T ss_pred eEEE-EEecChhHHHHHHHHHHHhcCCCCcEEEEEeCCCCChhhccHHHHHH-----HcCCCCCCccccccCC-CCCCCH
Confidence 4443 346677777888889999874 789988887654321 0 11100 01222110 0001111 011122
Q ss_pred HHHHHHHHhhccHHHHHHHHHHhhcCCCCccEEE--ecCccc-hHHHHHHHhCCceEEEccc
Q 043556 79 GNKLKKILQVMPGNLEELIEEINEKEDEKIDCFI--ADAYMG-WTMRIAEKMKLRRGVVWPS 137 (166)
Q Consensus 79 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~iI--~D~~~~-~~~~vA~~l~iP~i~~~~~ 137 (166)
....-. +-..+.+++++ .+||+|+ .|.... .+..+|.++|||++.+.-.
T Consensus 75 ~~~~~~----~~~~~~~~~~~------~~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG 126 (365)
T TIGR03568 75 AKSMGL----TIIGFSDAFER------LKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGG 126 (365)
T ss_pred HHHHHH----HHHHHHHHHHH------hCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECC
Confidence 221111 11234555554 5789877 455554 5678999999999965444
No 89
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=90.12 E-value=5.2 Score=28.38 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=30.3
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEE
Q 043556 4 PHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTF 36 (166)
Q Consensus 4 ~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~ 36 (166)
.-|-+++.++.|=....+.+|.+.+.+|++|.+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~ 35 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGV 35 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 457789999999999999999999999999999
No 90
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=90.06 E-value=1 Score=35.53 Aligned_cols=33 Identities=15% Similarity=0.224 Sum_probs=24.9
Q ss_pred cCCCCCChHHHHHHHHHHHHC-CCEEEEEeCCcc
Q 043556 10 PAPAQGHVIPLLEFSQCLANH-GVRVTFVNSEYN 42 (166)
Q Consensus 10 ~~p~~GH~~P~l~la~~L~~r-Gh~Vt~~t~~~~ 42 (166)
-.+++..+.=+.++.++|+++ |+++.++.+...
T Consensus 5 ~~gtr~~~~~~~pl~~~l~~~~~~~~~~~~tg~h 38 (363)
T cd03786 5 VTGTRPEYIKLAPLIRALKKDPGFELVLVVTGQH 38 (363)
T ss_pred EEecCHHHHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence 345566777777888889987 999998777643
No 91
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=89.79 E-value=0.61 Score=31.63 Aligned_cols=44 Identities=16% Similarity=0.052 Sum_probs=34.0
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHh
Q 043556 4 PHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLK 48 (166)
Q Consensus 4 ~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~ 48 (166)
+||++.-.++.+=+. ..++.++|.++|++|+++.++...+.+..
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~ 44 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTP 44 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhh
Confidence 377777777765555 99999999999999999999876555443
No 92
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=89.74 E-value=0.72 Score=31.11 Aligned_cols=39 Identities=8% Similarity=0.028 Sum_probs=27.1
Q ss_pred CEEEEEcCCCCC---ChHHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 4 PHVLVIPAPAQG---HVIPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 4 ~~il~~~~p~~G---H~~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
+||+|+--|-.+ .-...+.+.++.++|||+|.++...+.
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL 42 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDL 42 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcE
Confidence 367777666644 346788999999999999999998764
No 93
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=89.53 E-value=3.7 Score=31.34 Aligned_cols=31 Identities=29% Similarity=0.285 Sum_probs=27.2
Q ss_pred CCCChHHHHHHHHHHHHCCCEEEEEeCCcch
Q 043556 13 AQGHVIPLLEFSQCLANHGVRVTFVNSEYNH 43 (166)
Q Consensus 13 ~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~ 43 (166)
..|+-.-+..+++.|.+.||+|++++.....
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~ 43 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPWG 43 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCCC
Confidence 3688889999999999999999999987644
No 94
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=89.26 E-value=3.7 Score=32.33 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=35.4
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcch
Q 043556 4 PHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNH 43 (166)
Q Consensus 4 ~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~ 43 (166)
..|.+.-.||.|--.-.-.|+++|.++||+|-+++-++..
T Consensus 52 ~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSS 91 (323)
T COG1703 52 HVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSS 91 (323)
T ss_pred cEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCC
Confidence 4788888999999999999999999999999999876543
No 95
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=89.19 E-value=0.74 Score=35.44 Aligned_cols=30 Identities=30% Similarity=0.376 Sum_probs=26.6
Q ss_pred CCCChHHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 13 AQGHVIPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 13 ~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
.-|...-...+++.|.++||+|+++++...
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (375)
T cd03821 13 YGGPVRVVLNLSKALAKLGHEVTVATTDAG 42 (375)
T ss_pred cCCeehHHHHHHHHHHhcCCcEEEEecCCC
Confidence 348999999999999999999999987654
No 96
>PRK00654 glgA glycogen synthase; Provisional
Probab=89.15 E-value=0.74 Score=38.09 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=28.2
Q ss_pred CEEEEEcCC---C--C-CChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 4 PHVLVIPAP---A--Q-GHVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 4 ~~il~~~~p---~--~-GH~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
+||+++++- . . |--.-.-.|+++|+++||+|+++++..
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y 44 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPGY 44 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 366666643 1 2 444566889999999999999999864
No 97
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=88.95 E-value=8.8 Score=30.39 Aligned_cols=45 Identities=11% Similarity=0.160 Sum_probs=39.0
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHHC--CCEEEEEeCCcchhHHHh
Q 043556 4 PHVLVIPAPAQGHVIPLLEFSQCLANH--GVRVTFVNSEYNHQRVLK 48 (166)
Q Consensus 4 ~~il~~~~p~~GH~~P~l~la~~L~~r--Gh~Vt~~t~~~~~~~~~~ 48 (166)
+||+++-..+.|++.-...+.+.|+++ +.+|++++.+....-++.
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~ 47 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSR 47 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhc
Confidence 379999999999999999999999995 899999998776655543
No 98
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=88.32 E-value=1.7 Score=30.24 Aligned_cols=45 Identities=22% Similarity=0.206 Sum_probs=38.7
Q ss_pred CCCCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhH
Q 043556 1 MSNPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQR 45 (166)
Q Consensus 1 ~~~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~ 45 (166)
|++++|++.+.+.-||=.-.--+++.|++.|++|...........
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e 54 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEE 54 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHH
Confidence 468999999999999999999999999999999988766554433
No 99
>PRK08506 replicative DNA helicase; Provisional
Probab=88.12 E-value=9.2 Score=32.00 Aligned_cols=41 Identities=17% Similarity=0.312 Sum_probs=34.7
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHH
Q 043556 6 VLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRV 46 (166)
Q Consensus 6 il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~ 46 (166)
+++..-|+.|=-.-.+.++...+++|+.|.+++.+-....+
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql 235 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQL 235 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHH
Confidence 56677888999999999999998899999999988765554
No 100
>PRK14099 glycogen synthase; Provisional
Probab=87.97 E-value=1.2 Score=37.16 Aligned_cols=41 Identities=24% Similarity=0.301 Sum_probs=32.4
Q ss_pred CCCCEEEEEcCCC-----C-CChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 1 MSNPHVLVIPAPA-----Q-GHVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 1 ~~~~~il~~~~p~-----~-GH~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
|+++||++++.-. . |=-.-+-.|.++|+++||+|.++.|..
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 7889999987643 1 333567789999999999999999964
No 101
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=87.97 E-value=6.1 Score=26.40 Aligned_cols=42 Identities=17% Similarity=0.272 Sum_probs=36.3
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHH
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRV 46 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~ 46 (166)
|+++.+.++..|-.-..-++.-|..+|++|.++......+.+
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~ 42 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEI 42 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 689999999999999999999999999999999876544443
No 102
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=87.88 E-value=11 Score=29.97 Aligned_cols=110 Identities=17% Similarity=0.183 Sum_probs=59.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHC-CCEEEEEeCCcchhHHHhhhccCCCCCCCeee-eecCCCCCCCcCchhHHHHH
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANH-GVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRL-VSIPDGMEPWEDRNELGNKL 82 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~r-Gh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~-~~l~~~~~~~~~~~~~~~~~ 82 (166)
||+++ .+++.++.=+.++.++|.++ +.++.++.+.........-.. .-++.. ..+. ... ...+.....
T Consensus 2 ~i~~~-~gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~-----~~~i~~~~~~~--~~~--~~~~~~~~~ 71 (365)
T TIGR00236 2 KVSIV-LGTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQVLD-----LFHLPPDYDLN--IMS--PGQTLGEIT 71 (365)
T ss_pred eEEEE-EecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHH-----hcCCCCCeeee--cCC--CCCCHHHHH
Confidence 55554 46678999999999999987 677777776654433221100 002221 1111 101 011111111
Q ss_pred HHHHhhccHHHHHHHHHHhhcCCCCccEEEe--cCcc-chHHHHHHHhCCceEEE
Q 043556 83 KKILQVMPGNLEELIEEINEKEDEKIDCFIA--DAYM-GWTMRIAEKMKLRRGVV 134 (166)
Q Consensus 83 ~~~~~~~~~~~~~ll~~l~~~~~~~~d~iI~--D~~~-~~~~~vA~~l~iP~i~~ 134 (166)
.... ..+.+++++ .+||+|++ |... .++..+|.++|||++.+
T Consensus 72 ~~~~----~~l~~~l~~------~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~ 116 (365)
T TIGR00236 72 SNML----EGLEELLLE------EKPDIVLVQGDTTTTLAGALAAFYLQIPVGHV 116 (365)
T ss_pred HHHH----HHHHHHHHH------cCCCEEEEeCCchHHHHHHHHHHHhCCCEEEE
Confidence 1111 235555554 57899885 4443 34677899999999865
No 103
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=87.29 E-value=13 Score=30.35 Aligned_cols=41 Identities=20% Similarity=0.378 Sum_probs=33.8
Q ss_pred EEEEcCCCCCChHHHHHHHHHHH-HCCCEEEEEeCCcchhHH
Q 043556 6 VLVIPAPAQGHVIPLLEFSQCLA-NHGVRVTFVNSEYNHQRV 46 (166)
Q Consensus 6 il~~~~p~~GH~~P~l~la~~L~-~rGh~Vt~~t~~~~~~~~ 46 (166)
+++..-|+.|=-.-.+.++..++ +.|+.|-+++.+.....+
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l 238 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQL 238 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHH
Confidence 56677788899999999999888 679999999988765554
No 104
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=86.54 E-value=1 Score=32.92 Aligned_cols=34 Identities=18% Similarity=0.222 Sum_probs=24.7
Q ss_pred CEEEEEcCCCC-CChHHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 4 PHVLVIPAPAQ-GHVIPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 4 ~~il~~~~p~~-GH~~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
+||+++...++ |+ ++.++...|||+||-++-...
T Consensus 1 mKIaiIgAsG~~Gs-----~i~~EA~~RGHeVTAivRn~~ 35 (211)
T COG2910 1 MKIAIIGASGKAGS-----RILKEALKRGHEVTAIVRNAS 35 (211)
T ss_pred CeEEEEecCchhHH-----HHHHHHHhCCCeeEEEEeChH
Confidence 36666665554 43 578999999999998876543
No 105
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=86.46 E-value=4 Score=26.78 Aligned_cols=37 Identities=22% Similarity=0.371 Sum_probs=33.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
|+++.+.+...|-.-+.-++..|.++||+|.++-...
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~ 38 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANV 38 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCC
Confidence 7899999999999999999999999999999985544
No 106
>PRK05595 replicative DNA helicase; Provisional
Probab=86.09 E-value=11 Score=31.09 Aligned_cols=41 Identities=20% Similarity=0.383 Sum_probs=33.3
Q ss_pred EEEEcCCCCCChHHHHHHHHHHH-HCCCEEEEEeCCcchhHH
Q 043556 6 VLVIPAPAQGHVIPLLEFSQCLA-NHGVRVTFVNSEYNHQRV 46 (166)
Q Consensus 6 il~~~~p~~GH~~P~l~la~~L~-~rGh~Vt~~t~~~~~~~~ 46 (166)
+++..-|+.|=-.-.+.++..++ ++|..|.+++.+-....+
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l 245 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQL 245 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHH
Confidence 45677788999999999999876 569999999988765544
No 107
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=86.09 E-value=1.5 Score=33.18 Aligned_cols=39 Identities=23% Similarity=0.286 Sum_probs=31.0
Q ss_pred EEEEEcCC--CCCChHHHHHHHHHHHHCCCEEEEEeCCcch
Q 043556 5 HVLVIPAP--AQGHVIPLLEFSQCLANHGVRVTFVNSEYNH 43 (166)
Q Consensus 5 ~il~~~~p--~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~ 43 (166)
||+++... ..|+-.-+..+++.|.++||+|++++.....
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~ 41 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEG 41 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCC
Confidence 35555554 4688889999999999999999999876543
No 108
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=86.06 E-value=12 Score=27.79 Aligned_cols=42 Identities=21% Similarity=0.449 Sum_probs=33.7
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHC-CCEEEEEeCCcchhHHH
Q 043556 6 VLVIPAPAQGHVIPLLEFSQCLANH-GVRVTFVNSEYNHQRVL 47 (166)
Q Consensus 6 il~~~~p~~GH~~P~l~la~~L~~r-Gh~Vt~~t~~~~~~~~~ 47 (166)
+++...|+.|=-.-.++++..++.+ |..|.+++.+.....+.
T Consensus 16 ~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~ 58 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLL 58 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHH
Confidence 4556667778889999999998887 99999999987655543
No 109
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=85.99 E-value=14 Score=28.45 Aligned_cols=59 Identities=20% Similarity=0.213 Sum_probs=40.3
Q ss_pred CCCCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCCC
Q 043556 1 MSNPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGME 70 (166)
Q Consensus 1 ~~~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~ 70 (166)
|.++||+++.+|+...-. +....|.++|+++.++......... .. ...+....+|.+..
T Consensus 1 ~~~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~~~~~~~-~~-------l~~~DgLvipGGfs 59 (261)
T PRK01175 1 MESIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHINDLAAER-KS-------VSDYDCLVIPGGFS 59 (261)
T ss_pred CCCCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeeccccccc-cc-------hhhCCEEEECCCCC
Confidence 678899999999986553 5678888999999988764321110 00 12567777787653
No 110
>PRK08760 replicative DNA helicase; Provisional
Probab=85.94 E-value=13 Score=31.25 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=33.5
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHH-CCCEEEEEeCCcchhHH
Q 043556 6 VLVIPAPAQGHVIPLLEFSQCLAN-HGVRVTFVNSEYNHQRV 46 (166)
Q Consensus 6 il~~~~p~~GH~~P~l~la~~L~~-rGh~Vt~~t~~~~~~~~ 46 (166)
+++..-|+.|=-.-.+.++...+. .|+.|-+++.+.....+
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql 273 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQL 273 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHH
Confidence 566778899999999999998875 49999999888765544
No 111
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=85.60 E-value=1.8 Score=35.85 Aligned_cols=39 Identities=23% Similarity=0.262 Sum_probs=28.3
Q ss_pred CEEEEEcCCC-----C-CChHHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 4 PHVLVIPAPA-----Q-GHVIPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 4 ~~il~~~~p~-----~-GH~~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
+||+++++-. . |=-.-.-.|+++|+++||+|+++++...
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~ 45 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAYG 45 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 3677776442 2 2235567899999999999999998643
No 112
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=85.55 E-value=6.8 Score=24.55 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=20.0
Q ss_pred HHHHHHHHHHCCCEEEEEeCCcchhHHHh
Q 043556 20 LLEFSQCLANHGVRVTFVNSEYNHQRVLK 48 (166)
Q Consensus 20 ~l~la~~L~~rGh~Vt~~t~~~~~~~~~~ 48 (166)
++++++.|.+.|+++ ++++...+.++.
T Consensus 2 ~~~~~~~l~~lG~~i--~AT~gTa~~L~~ 28 (90)
T smart00851 2 LVELAKRLAELGFEL--VATGGTAKFLRE 28 (90)
T ss_pred HHHHHHHHHHCCCEE--EEccHHHHHHHH
Confidence 468999999999986 466666555554
No 113
>PRK06321 replicative DNA helicase; Provisional
Probab=85.40 E-value=18 Score=30.29 Aligned_cols=41 Identities=15% Similarity=0.267 Sum_probs=33.6
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHH-CCCEEEEEeCCcchhHH
Q 043556 6 VLVIPAPAQGHVIPLLEFSQCLAN-HGVRVTFVNSEYNHQRV 46 (166)
Q Consensus 6 il~~~~p~~GH~~P~l~la~~L~~-rGh~Vt~~t~~~~~~~~ 46 (166)
+++..-|+.|=-.-.+.++...+. .|..|.|++.+-....+
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql 270 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQL 270 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 566778899999999999999884 59999999888765554
No 114
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=85.39 E-value=8.2 Score=30.56 Aligned_cols=28 Identities=14% Similarity=0.122 Sum_probs=22.8
Q ss_pred CChHHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 15 GHVIPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 15 GH~~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
|=-.-+..+++.|.+.||+|+++++...
T Consensus 13 Gv~~~~~~l~~~l~~~g~~v~~~~~~~~ 40 (372)
T cd03792 13 GVAEILHSLVPLMRDLGVDTRWEVIKGD 40 (372)
T ss_pred cHHHHHHHHHHHHHHcCCCceEEecCCC
Confidence 4456666999999999999999987553
No 115
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=85.25 E-value=1.6 Score=32.03 Aligned_cols=41 Identities=12% Similarity=-0.004 Sum_probs=31.7
Q ss_pred CCCEEEEEcCCCCCChHH-HHHHHHHHHHCCCEEEEEeCCcch
Q 043556 2 SNPHVLVIPAPAQGHVIP-LLEFSQCLANHGVRVTFVNSEYNH 43 (166)
Q Consensus 2 ~~~~il~~~~p~~GH~~P-~l~la~~L~~rGh~Vt~~t~~~~~ 43 (166)
+..||++.-.++ +...- ..+++++|.++|++|+++.++...
T Consensus 4 ~~k~IllgVTGs-iaa~k~a~~lir~L~k~G~~V~vv~T~aA~ 45 (196)
T PRK08305 4 KGKRIGFGLTGS-HCTYDEVMPEIEKLVDEGAEVTPIVSYTVQ 45 (196)
T ss_pred CCCEEEEEEcCH-HHHHHHHHHHHHHHHhCcCEEEEEECHhHH
Confidence 346777766666 44444 699999999999999999988654
No 116
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=85.21 E-value=10 Score=31.02 Aligned_cols=29 Identities=14% Similarity=0.087 Sum_probs=22.8
Q ss_pred CChHHHHHHHHHHHHC--CCEEEEEeCCcch
Q 043556 15 GHVIPLLEFSQCLANH--GVRVTFVNSEYNH 43 (166)
Q Consensus 15 GH~~P~l~la~~L~~r--Gh~Vt~~t~~~~~ 43 (166)
|==--++..++.|.++ ||+|+++|+....
T Consensus 15 g~ervl~~a~~~l~~~~~~~~v~i~t~~~~~ 45 (419)
T cd03806 15 GGERVLWCAVRALQKRYPNNIVVIYTGDLDA 45 (419)
T ss_pred CchHHHHHHHHHHHHhCCCcEEEEECCCCCC
Confidence 3445678888999988 8999999987543
No 117
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=85.12 E-value=16 Score=29.91 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=33.8
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHH-CCCEEEEEeCCcchhHH
Q 043556 6 VLVIPAPAQGHVIPLLEFSQCLAN-HGVRVTFVNSEYNHQRV 46 (166)
Q Consensus 6 il~~~~p~~GH~~P~l~la~~L~~-rGh~Vt~~t~~~~~~~~ 46 (166)
+++...|+.|=-.-.++++..++. .|..|.+++.+.....+
T Consensus 198 ~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i 239 (434)
T TIGR00665 198 IILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQL 239 (434)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHH
Confidence 466777888999999999999886 69999999998765554
No 118
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=84.87 E-value=20 Score=29.24 Aligned_cols=116 Identities=21% Similarity=0.230 Sum_probs=65.9
Q ss_pred CCCCEEEEEcCCCCCChHHHHHHHHHHHHCC-CEEEEEeCCcchh-HHHhhhccCCCCCCCeeeeecCCC-CCCCcCchh
Q 043556 1 MSNPHVLVIPAPAQGHVIPLLEFSQCLANHG-VRVTFVNSEYNHQ-RVLKSLEGKNNLEEKIRLVSIPDG-MEPWEDRNE 77 (166)
Q Consensus 1 ~~~~~il~~~~p~~GH~~P~l~la~~L~~rG-h~Vt~~t~~~~~~-~~~~~~~~~~~~~~~i~~~~l~~~-~~~~~~~~~ 77 (166)
|.+.||+++ ++++=-+.=|-.|.+++.+.+ .+..++.+..... .+...+.. .-++.. |+. +.-..+..+
T Consensus 1 m~~~Kv~~I-~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le----~~~i~~---pdy~L~i~~~~~t 72 (383)
T COG0381 1 MKMLKVLTI-FGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLE----LFGIRK---PDYDLNIMKPGQT 72 (383)
T ss_pred CCceEEEEE-EecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHH----HhCCCC---CCcchhccccCCC
Confidence 545565554 567788888999999999987 8888877776542 33232210 002221 221 111111122
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHhhcCCCCccEEE--ecCccc-hHHHHHHHhCCceEEE
Q 043556 78 LGNKLKKILQVMPGNLEELIEEINEKEDEKIDCFI--ADAYMG-WTMRIAEKMKLRRGVV 134 (166)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~iI--~D~~~~-~~~~vA~~l~iP~i~~ 134 (166)
+.+.... +-..+.+++++ .+||+|+ .|.... ++..+|-+++||+.-.
T Consensus 73 l~~~t~~----~i~~~~~vl~~------~kPD~VlVhGDT~t~lA~alaa~~~~IpV~Hv 122 (383)
T COG0381 73 LGEITGN----IIEGLSKVLEE------EKPDLVLVHGDTNTTLAGALAAFYLKIPVGHV 122 (383)
T ss_pred HHHHHHH----HHHHHHHHHHh------hCCCEEEEeCCcchHHHHHHHHHHhCCceEEE
Confidence 2222211 11246666665 5789877 566554 4577889999999864
No 119
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=84.84 E-value=15 Score=27.93 Aligned_cols=44 Identities=18% Similarity=0.188 Sum_probs=38.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCC--CEEEEEeCCcchhHHHh
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHG--VRVTFVNSEYNHQRVLK 48 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rG--h~Vt~~t~~~~~~~~~~ 48 (166)
||+++-..+.|++.-+..+.++|+++. .+|++++.......++.
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~ 46 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLEL 46 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhc
Confidence 588999999999999999999999974 89999999876655543
No 120
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=84.73 E-value=18 Score=29.75 Aligned_cols=98 Identities=11% Similarity=0.152 Sum_probs=64.7
Q ss_pred EEEcCCCCCChHHHHHHHHHHHHC--CCEEEEEe-CCcchhHHHhhhccCCCCCCCeeeeecCCCCCCCcCchhHHHHHH
Q 043556 7 LVIPAPAQGHVIPLLEFSQCLANH--GVRVTFVN-SEYNHQRVLKSLEGKNNLEEKIRLVSIPDGMEPWEDRNELGNKLK 83 (166)
Q Consensus 7 l~~~~p~~GH~~P~l~la~~L~~r--Gh~Vt~~t-~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 83 (166)
+-+=..+.|=.+-..+|.++|.++ ++.+++-| |+-..+.+.+.+. ..+....+|-+.+
T Consensus 52 vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~------~~v~h~YlP~D~~------------- 112 (419)
T COG1519 52 VWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFG------DSVIHQYLPLDLP------------- 112 (419)
T ss_pred EEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcC------CCeEEEecCcCch-------------
Confidence 344455678899999999999999 88888776 4434444544432 2466666664332
Q ss_pred HHHhhccHHHHHHHHHHhhcCCCCccE-EEecC-ccchHHHHHHHhCCceEEEcc
Q 043556 84 KILQVMPGNLEELIEEINEKEDEKIDC-FIADA-YMGWTMRIAEKMKLRRGVVWP 136 (166)
Q Consensus 84 ~~~~~~~~~~~~ll~~l~~~~~~~~d~-iI~D~-~~~~~~~vA~~l~iP~i~~~~ 136 (166)
..++.+++. .+||+ ||.+. +.+....-+++.|+|.+..+.
T Consensus 113 -------~~v~rFl~~------~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNa 154 (419)
T COG1519 113 -------IAVRRFLRK------WRPKLLIIMETELWPNLINELKRRGIPLVLVNA 154 (419)
T ss_pred -------HHHHHHHHh------cCCCEEEEEeccccHHHHHHHHHcCCCEEEEee
Confidence 124555655 56775 44776 445567788999999998765
No 121
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=84.66 E-value=9.1 Score=25.22 Aligned_cols=87 Identities=23% Similarity=0.169 Sum_probs=52.1
Q ss_pred ChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCCCCCcCchhHHHHHHHHHhhccHHHHH
Q 043556 16 HVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGMEPWEDRNELGNKLKKILQVMPGNLEE 95 (166)
Q Consensus 16 H~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (166)
.-.=+.++++.|.+.|+++ ++++...+.+... ++.+..+......+ ..+ .+.+.+
T Consensus 11 dk~~~~~~a~~l~~~G~~i--~aT~gTa~~L~~~---------gi~~~~v~~~~~~~--~~~------------~~~i~~ 65 (116)
T cd01423 11 SKPELLPTAQKLSKLGYKL--YATEGTADFLLEN---------GIPVTPVAWPSEEP--QND------------KPSLRE 65 (116)
T ss_pred cchhHHHHHHHHHHCCCEE--EEccHHHHHHHHc---------CCCceEeeeccCCC--CCC------------chhHHH
Confidence 3445789999999999886 4666666666542 56554432110000 000 123445
Q ss_pred HHHHHhhcCCCCccEEEecCc---------cchHHHHHHHhCCceEE
Q 043556 96 LIEEINEKEDEKIDCFIADAY---------MGWTMRIAEKMKLRRGV 133 (166)
Q Consensus 96 ll~~l~~~~~~~~d~iI~D~~---------~~~~~~vA~~l~iP~i~ 133 (166)
++++ .++|+||.-+- .......|-++|||+++
T Consensus 66 ~i~~------~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 66 LLAE------GKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred HHHc------CCceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 5543 58999997332 23467789999999963
No 122
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=84.33 E-value=12 Score=30.35 Aligned_cols=109 Identities=13% Similarity=0.059 Sum_probs=54.5
Q ss_pred CCChHHHHHHHHHHHH--CCCEEE---EEeCCcchhHHHhhhccCCCCCCCeeeeecCC-CCCCCcCchhHHHHHHHHHh
Q 043556 14 QGHVIPLLEFSQCLAN--HGVRVT---FVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPD-GMEPWEDRNELGNKLKKILQ 87 (166)
Q Consensus 14 ~GH~~P~l~la~~L~~--rGh~Vt---~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~-~~~~~~~~~~~~~~~~~~~~ 87 (166)
+|==.--+.++++|.+ +|++|. ++.+....+. ...+ ..+ .+..+|. ++........+.+.+..+..
T Consensus 7 hged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~--~~ip-----~~g-~~~~~~sgg~~~~~~~~~~~~~~~gl~~ 78 (396)
T TIGR03492 7 HGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQN--LGIP-----IIG-PTKELPSGGFSYQSLRGLLRDLRAGLVG 78 (396)
T ss_pred chHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhh--CCCc-----eeC-CCCCCCCCCccCCCHHHHHHHHHhhHHH
Confidence 3434566889999998 699999 8877754322 1110 012 3344442 22111001112222221211
Q ss_pred hccHHHHHHHHHHhhcCCCCccEEEecCccchHHHHHHHhCCceEEEcc
Q 043556 88 VMPGNLEELIEEINEKEDEKIDCFIADAYMGWTMRIAEKMKLRRGVVWP 136 (166)
Q Consensus 88 ~~~~~~~~ll~~l~~~~~~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~~ 136 (166)
..-. -..++++.. .++|+||.=.-+. ....|...|+|++.+.+
T Consensus 79 ~~~~-~~~~~~~~~----~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~ 121 (396)
T TIGR03492 79 LTLG-QWRALRKWA----KKGDLIVAVGDIV-PLLFAWLSGKPYAFVGT 121 (396)
T ss_pred HHHH-HHHHHHHHh----hcCCEEEEECcHH-HHHHHHHcCCCceEEEe
Confidence 1111 122344432 3789888433322 66778889999998443
No 123
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=84.33 E-value=2.4 Score=31.09 Aligned_cols=41 Identities=12% Similarity=0.177 Sum_probs=29.9
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhH
Q 043556 4 PHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQR 45 (166)
Q Consensus 4 ~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~ 45 (166)
|||++..=-+. +---+..|.+.|.+.||+|+++++...+..
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg 41 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSG 41 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTT
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcC
Confidence 46666666655 455678899999888899999999876544
No 124
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=84.13 E-value=19 Score=28.61 Aligned_cols=45 Identities=9% Similarity=0.113 Sum_probs=39.8
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHC--CCEEEEEeCCcchhHHH
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANH--GVRVTFVNSEYNHQRVL 47 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~r--Gh~Vt~~t~~~~~~~~~ 47 (166)
..+|+++-..+.|++.-..++.+.|+++ +.+|++++......-++
T Consensus 5 ~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~ 51 (352)
T PRK10422 5 FRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILS 51 (352)
T ss_pred CceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhc
Confidence 4689999999999999999999999997 89999999887665554
No 125
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=83.83 E-value=16 Score=28.63 Aligned_cols=43 Identities=12% Similarity=0.177 Sum_probs=37.3
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHC--CCEEEEEeCCcchhHHH
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANH--GVRVTFVNSEYNHQRVL 47 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~r--Gh~Vt~~t~~~~~~~~~ 47 (166)
||+++-..+.|++.-...+.+.|++. +.+|++++.+....-++
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~ 45 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLE 45 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHh
Confidence 68999999999999999999999996 89999999876654443
No 126
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=83.75 E-value=16 Score=31.70 Aligned_cols=42 Identities=12% Similarity=-0.005 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhcCCCCccEEE-ecC--ccchHHHHHHHhCC--ceEEEcc
Q 043556 92 NLEELIEEINEKEDEKIDCFI-ADA--YMGWTMRIAEKMKL--RRGVVWP 136 (166)
Q Consensus 92 ~~~~ll~~l~~~~~~~~d~iI-~D~--~~~~~~~vA~~l~i--P~i~~~~ 136 (166)
.++++.+.+.+ ++||++| .|. |..-....+++.|+ |++.+.+
T Consensus 298 ~~~~l~~~i~~---~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVs 344 (608)
T PRK01021 298 RYRKLYKTILK---TNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVC 344 (608)
T ss_pred HHHHHHHHHHh---cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEEC
Confidence 34555555543 6899888 686 45556778899996 9776544
No 127
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=83.60 E-value=4.5 Score=29.34 Aligned_cols=97 Identities=13% Similarity=0.179 Sum_probs=46.1
Q ss_pred CCCCCChHHHHHHHHHHHHC--CCEEEEEeCCcch-hHHHhhhccCCCCCCCeeeeecCCCCCCCcCchhHHHHHHHHHh
Q 043556 11 APAQGHVIPLLEFSQCLANH--GVRVTFVNSEYNH-QRVLKSLEGKNNLEEKIRLVSIPDGMEPWEDRNELGNKLKKILQ 87 (166)
Q Consensus 11 ~p~~GH~~P~l~la~~L~~r--Gh~Vt~~t~~~~~-~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 87 (166)
..+.|=++-..+|+++|.++ |++|.+-++.... +.+.+.+. +.+....+|-+.+
T Consensus 28 a~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~------~~v~~~~~P~D~~----------------- 84 (186)
T PF04413_consen 28 AASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLP------DRVDVQYLPLDFP----------------- 84 (186)
T ss_dssp -SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-G------GG-SEEE---SSH-----------------
T ss_pred ECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCC------CCeEEEEeCccCH-----------------
Confidence 44568889999999999987 8888887664433 33333221 2344444442221
Q ss_pred hccHHHHHHHHHHhhcCCCCccEEE-ecC-ccchHHHHHHHhCCceEEEccccH
Q 043556 88 VMPGNLEELIEEINEKEDEKIDCFI-ADA-YMGWTMRIAEKMKLRRGVVWPSSA 139 (166)
Q Consensus 88 ~~~~~~~~ll~~l~~~~~~~~d~iI-~D~-~~~~~~~vA~~l~iP~i~~~~~~~ 139 (166)
...+.+++.+ +||++| .+. +.+.....|++.|||.+.+..-..
T Consensus 85 ---~~~~rfl~~~------~P~~~i~~EtElWPnll~~a~~~~ip~~LvNarls 129 (186)
T PF04413_consen 85 ---WAVRRFLDHW------RPDLLIWVETELWPNLLREAKRRGIPVVLVNARLS 129 (186)
T ss_dssp ---HHHHHHHHHH--------SEEEEES----HHHHHH-----S-EEEEEE---
T ss_pred ---HHHHHHHHHh------CCCEEEEEccccCHHHHHHHhhcCCCEEEEeeeec
Confidence 1245556663 567555 665 444567789999999998765433
No 128
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=83.08 E-value=2.2 Score=35.13 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 18 IPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 18 ~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
.-.-.|+++|+++||+|+++++..
T Consensus 20 ~~~~~L~~aL~~~G~~V~Vi~p~y 43 (476)
T cd03791 20 DVVGALPKALAKLGHDVRVIMPKY 43 (476)
T ss_pred HHHHHHHHHHHHCCCeEEEEecCC
Confidence 345679999999999999999764
No 129
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=83.03 E-value=10 Score=24.64 Aligned_cols=84 Identities=18% Similarity=0.106 Sum_probs=53.2
Q ss_pred CChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCCCCCcCchhHHHHHHHHHhhccHHHH
Q 043556 15 GHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGMEPWEDRNELGNKLKKILQVMPGNLE 94 (166)
Q Consensus 15 GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (166)
++-.=++++++.|.+.|+++ ++++...+.+... ++.+..+.... . ..+.+.
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l--~aT~gT~~~l~~~---------gi~~~~v~~~~-~-----------------~~~~i~ 60 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKL--VATEGTAKYLQEA---------GIPVEVVNKVS-E-----------------GRPNIV 60 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEE--EEchHHHHHHHHc---------CCeEEEEeecC-C-----------------CchhHH
Confidence 34556889999999999986 4666666665543 66655442110 0 112234
Q ss_pred HHHHHHhhcCCCCccEEEecCc-------cchHHHHHHHhCCceEE
Q 043556 95 ELIEEINEKEDEKIDCFIADAY-------MGWTMRIAEKMKLRRGV 133 (166)
Q Consensus 95 ~ll~~l~~~~~~~~d~iI~D~~-------~~~~~~vA~~l~iP~i~ 133 (166)
+++++ .++|+||.-.- ..+....|-++|||+++
T Consensus 61 ~~i~~------~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 61 DLIKN------GEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred HHHHc------CCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 44443 68999997331 23567789999999985
No 130
>PHA02542 41 41 helicase; Provisional
Probab=83.01 E-value=11 Score=31.64 Aligned_cols=41 Identities=12% Similarity=0.276 Sum_probs=34.5
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHH
Q 043556 6 VLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRV 46 (166)
Q Consensus 6 il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~ 46 (166)
+++..-|+.|=-.-.+.+|...++.|..|-+++-+-....+
T Consensus 193 iiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql 233 (473)
T PHA02542 193 NVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVI 233 (473)
T ss_pred EEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHH
Confidence 56677889999999999999999999999999887665543
No 131
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=83.01 E-value=11 Score=30.00 Aligned_cols=44 Identities=9% Similarity=0.223 Sum_probs=33.2
Q ss_pred CCccEEE-ecCcc-chHHHHHHHhCCceEEEccccHHHHHHHhccc
Q 043556 106 EKIDCFI-ADAYM-GWTMRIAEKMKLRRGVVWPSSAASVALCFRIP 149 (166)
Q Consensus 106 ~~~d~iI-~D~~~-~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~ 149 (166)
..||+|| .|... ..+..-|.++|||+|.+.=+.+..-.+.|.+|
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~dp~~IdypIP 196 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNCDPDGITYPVP 196 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCCCccccceeec
Confidence 3688766 78866 45778899999999999877776555555555
No 132
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=82.97 E-value=2.4 Score=30.19 Aligned_cols=26 Identities=31% Similarity=0.485 Sum_probs=24.5
Q ss_pred CCCChHHHHHHHHHHHHCCCEEEEEe
Q 043556 13 AQGHVIPLLEFSQCLANHGVRVTFVN 38 (166)
Q Consensus 13 ~~GH~~P~l~la~~L~~rGh~Vt~~t 38 (166)
.-|+-.....+++.|.++||+|+++.
T Consensus 12 ~~G~~~~~~~l~~~L~~~g~~v~v~~ 37 (229)
T cd01635 12 GGGVELVLLDLAKALARRGHEVEVVA 37 (229)
T ss_pred CCCchhHHHHHHHHHHHcCCeEEEEE
Confidence 55999999999999999999999998
No 133
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=82.60 E-value=8.7 Score=29.42 Aligned_cols=23 Identities=9% Similarity=0.170 Sum_probs=18.8
Q ss_pred HHHHHHHHHHCCCEEEEEeCCcc
Q 043556 20 LLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 20 ~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
-..|++.|.++||+|+..+....
T Consensus 12 gr~la~~L~~~g~~v~~s~~t~~ 34 (256)
T TIGR00715 12 SRAIAKGLIAQGIEILVTVTTSE 34 (256)
T ss_pred HHHHHHHHHhCCCeEEEEEccCC
Confidence 56889999999999998776554
No 134
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=80.93 E-value=4.1 Score=31.46 Aligned_cols=38 Identities=11% Similarity=-0.033 Sum_probs=27.9
Q ss_pred EEEEEcCCCC-CChHHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 5 HVLVIPAPAQ-GHVIPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 5 ~il~~~~p~~-GH~~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
||++++.... |--.-+..+++.|.++||+|++++....
T Consensus 1 ki~~~~~~~~~~~~~~~~~~~~~L~~~g~~v~v~~~~~~ 39 (355)
T cd03799 1 KIAYLVKEFPRLSETFILREILALEAAGHEVEIFSLRPP 39 (355)
T ss_pred CEEEECCCCCCcchHHHHHHHHHHHhCCCeEEEEEecCc
Confidence 3555554433 3556789999999999999999987643
No 135
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=80.18 E-value=19 Score=25.87 Aligned_cols=35 Identities=14% Similarity=0.270 Sum_probs=31.3
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEE
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFV 37 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~ 37 (166)
+.-|.+++.++.|=..-.+.+|.+.+.+|++|.++
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~iv 39 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVI 39 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 45688899999999999999999999999999655
No 136
>PRK07773 replicative DNA helicase; Validated
Probab=79.96 E-value=27 Score=31.78 Aligned_cols=42 Identities=19% Similarity=0.345 Sum_probs=34.2
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHC-CCEEEEEeCCcchhHHH
Q 043556 6 VLVIPAPAQGHVIPLLEFSQCLANH-GVRVTFVNSEYNHQRVL 47 (166)
Q Consensus 6 il~~~~p~~GH~~P~l~la~~L~~r-Gh~Vt~~t~~~~~~~~~ 47 (166)
+++..-|+.|=-.-.+.++...+.+ |..|.+++-+.....+.
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~ 262 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLV 262 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHH
Confidence 5677788999999999999998854 88999999887655543
No 137
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=79.91 E-value=24 Score=26.78 Aligned_cols=30 Identities=10% Similarity=0.048 Sum_probs=26.0
Q ss_pred CCCCChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 12 PAQGHVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 12 p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
+.-|.-.....+++.|.++||+|.+++...
T Consensus 10 ~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~ 39 (365)
T cd03807 10 DVGGAERMLVRLLKGLDRDRFEHVVISLTD 39 (365)
T ss_pred cCccHHHHHHHHHHHhhhccceEEEEecCc
Confidence 335899999999999999999999998754
No 138
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=79.89 E-value=25 Score=27.34 Aligned_cols=29 Identities=14% Similarity=0.085 Sum_probs=20.7
Q ss_pred CCccEEEecCc-c-chHHHHHHHhCCceEEE
Q 043556 106 EKIDCFIADAY-M-GWTMRIAEKMKLRRGVV 134 (166)
Q Consensus 106 ~~~d~iI~D~~-~-~~~~~vA~~l~iP~i~~ 134 (166)
.+||+|..-.. . ..+..+++++|+|.+..
T Consensus 81 ~~~dvvh~~~~~~~~~~~~~~~~~~~p~i~~ 111 (367)
T cd05844 81 HRPDLVHAHFGFDGVYALPLARRLGVPLVVT 111 (367)
T ss_pred hCCCEEEeccCchHHHHHHHHHHcCCCEEEE
Confidence 57899886432 2 23566789999999873
No 139
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=79.84 E-value=6 Score=31.95 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=27.4
Q ss_pred CCEEEEEcCCC-CCChHHHHHHHHHHHHCCC---EEEEE
Q 043556 3 NPHVLVIPAPA-QGHVIPLLEFSQCLANHGV---RVTFV 37 (166)
Q Consensus 3 ~~~il~~~~p~-~GH~~P~l~la~~L~~rGh---~Vt~~ 37 (166)
.+||++++... .||..-.-+|.++|.++|. +|.++
T Consensus 5 ~~~vlil~~~~G~GH~~aA~al~~~~~~~~~~~~~~~~~ 43 (391)
T PRK13608 5 NKKILIITGSFGNGHMQVTQSIVNQLNDMNLDHLSVIEH 43 (391)
T ss_pred CceEEEEECCCCchHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 46888888655 4999999999999998864 45544
No 140
>PRK05636 replicative DNA helicase; Provisional
Probab=79.12 E-value=31 Score=29.23 Aligned_cols=41 Identities=17% Similarity=0.352 Sum_probs=32.2
Q ss_pred EEEEcCCCCCChHHHHHHHHHHH-HCCCEEEEEeCCcchhHH
Q 043556 6 VLVIPAPAQGHVIPLLEFSQCLA-NHGVRVTFVNSEYNHQRV 46 (166)
Q Consensus 6 il~~~~p~~GH~~P~l~la~~L~-~rGh~Vt~~t~~~~~~~~ 46 (166)
+++..-|+.|=-.-.+.++...+ ++|..|.+++.+-....+
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql 309 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEI 309 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHH
Confidence 46677788899999999999877 458899998887665444
No 141
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=78.58 E-value=2.7 Score=30.52 Aligned_cols=38 Identities=21% Similarity=0.361 Sum_probs=24.3
Q ss_pred CEEEEEcCCCCCChHH------------HHHHHHHHHHCCCEEEEEeCCc
Q 043556 4 PHVLVIPAPAQGHVIP------------LLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 4 ~~il~~~~p~~GH~~P------------~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
.+|++...|+.-.+.| =..||+++..||++||++.++.
T Consensus 4 k~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 4 KKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp -EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 4555555555444422 3578999999999999999874
No 142
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=78.56 E-value=22 Score=25.56 Aligned_cols=100 Identities=21% Similarity=0.218 Sum_probs=48.7
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcc-----hhHHHhhhccCCCCCCCeeeeecCCCCCCCcCchh
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYN-----HQRVLKSLEGKNNLEEKIRLVSIPDGMEPWEDRNE 77 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~-----~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~ 77 (166)
+.-|-+++..++|=....+.++-+-+.+|.+|.++=--+. ...+.+.. +++++.....++.......
T Consensus 3 ~G~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~~l-------~~~~~~~~g~~f~~~~~~~- 74 (172)
T PF02572_consen 3 RGLIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGELKALKKL-------PNVEIERFGKGFVWRMNEE- 74 (172)
T ss_dssp ---EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHHHHHGGG-------T--EEEE--TT----GGGH-
T ss_pred CcEEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHHhC-------CeEEEEEcCCcccccCCCc-
Confidence 4568899999999999999999999999999998754332 11121221 4577776655442211111
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHhhcCCCCccEEEecCccc
Q 043556 78 LGNKLKKILQVMPGNLEELIEEINEKEDEKIDCFIADAYMG 118 (166)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~iI~D~~~~ 118 (166)
..+ ...+...++...+.+. +.++|+||.|=+..
T Consensus 75 ~~~-----~~~~~~~~~~a~~~i~---~~~~dlvILDEi~~ 107 (172)
T PF02572_consen 75 EED-----RAAAREGLEEAKEAIS---SGEYDLVILDEINY 107 (172)
T ss_dssp HHH-----HHHHHHHHHHHHHHTT----TT-SEEEEETHHH
T ss_pred HHH-----HHHHHHHHHHHHHHHh---CCCCCEEEEcchHH
Confidence 111 1112223333333332 15799999996543
No 143
>PRK09165 replicative DNA helicase; Provisional
Probab=78.48 E-value=28 Score=29.35 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=33.3
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHC---------------CCEEEEEeCCcchhHHH
Q 043556 6 VLVIPAPAQGHVIPLLEFSQCLANH---------------GVRVTFVNSEYNHQRVL 47 (166)
Q Consensus 6 il~~~~p~~GH~~P~l~la~~L~~r---------------Gh~Vt~~t~~~~~~~~~ 47 (166)
+++..-|+.|=-.-.+.++...+.+ |..|.+++.+-....+.
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~ 276 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLA 276 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHH
Confidence 5667778889999999999888754 78999999887665543
No 144
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=78.05 E-value=21 Score=29.59 Aligned_cols=40 Identities=30% Similarity=0.484 Sum_probs=34.8
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHH
Q 043556 6 VLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRV 46 (166)
Q Consensus 6 il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~ 46 (166)
|++---|+-|--.-+++++..|++|| +|-+++++....++
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Qi 135 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQI 135 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHH
Confidence 56666788899999999999999999 99999999876665
No 145
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=77.36 E-value=3.8 Score=30.74 Aligned_cols=26 Identities=19% Similarity=0.393 Sum_probs=20.3
Q ss_pred ChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 16 HVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 16 H~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
|+.-|.+++.+|.++|++|+++....
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 56889999999999999999999873
No 146
>PRK09620 hypothetical protein; Provisional
Probab=76.72 E-value=4.5 Score=30.41 Aligned_cols=40 Identities=15% Similarity=0.154 Sum_probs=28.0
Q ss_pred CCCCEEEEEcCCCCCChHH------------HHHHHHHHHHCCCEEEEEeCC
Q 043556 1 MSNPHVLVIPAPAQGHVIP------------LLEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 1 ~~~~~il~~~~p~~GH~~P------------~l~la~~L~~rGh~Vt~~t~~ 40 (166)
|+-.+|++...|+.=.+.| =..+|++|.+||++|+++...
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3445777776665444332 257899999999999998754
No 147
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=76.65 E-value=2.4 Score=32.06 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 18 IPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 18 ~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
.-.-.|+++|+++||+|+++++..
T Consensus 20 dv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 20 DVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHHHhcCCeEEEEEccc
Confidence 456689999999999999999875
No 148
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=76.60 E-value=6.3 Score=24.28 Aligned_cols=34 Identities=24% Similarity=0.168 Sum_probs=28.5
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEE
Q 043556 4 PHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFV 37 (166)
Q Consensus 4 ~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~ 37 (166)
.-++++..+...|..-+-++|+.|+++|+.|...
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3567777777899999999999999999987653
No 149
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=76.38 E-value=4.6 Score=31.44 Aligned_cols=44 Identities=20% Similarity=0.221 Sum_probs=38.6
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHC--CCEEEEEeCCcchhHHHh
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANH--GVRVTFVNSEYNHQRVLK 48 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~r--Gh~Vt~~t~~~~~~~~~~ 48 (166)
||+++-..+.|++.-+..+.+.|+++ +.+||+++.......++.
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~ 46 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRL 46 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhc
Confidence 58999999999999999999999997 999999999877555543
No 150
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=76.24 E-value=26 Score=28.06 Aligned_cols=31 Identities=16% Similarity=0.295 Sum_probs=23.2
Q ss_pred EEEcCCCCCChHHHHHHHHHHHHC-C--CEEEEE
Q 043556 7 LVIPAPAQGHVIPLLEFSQCLANH-G--VRVTFV 37 (166)
Q Consensus 7 l~~~~p~~GH~~P~l~la~~L~~r-G--h~Vt~~ 37 (166)
.+...-|.||..-.-.|.++|.++ | .+|+++
T Consensus 3 ils~~~G~GH~~aa~al~~~~~~~~~~~~~v~~~ 36 (382)
T PLN02605 3 ILMSDTGGGHRASAEAIKDAFQLEFGDEYQVFIV 36 (382)
T ss_pred EEEEcCCcChHHHHHHHHHHHHhhcCCCeeEEEE
Confidence 345556779999999999999875 5 455554
No 151
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=76.23 E-value=4.7 Score=28.84 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhcCCCCccEEEecCccchHHHHHHHhCCceEEEccccHH
Q 043556 91 GNLEELIEEINEKEDEKIDCFIADAYMGWTMRIAEKMKLRRGVVWPSSAA 140 (166)
Q Consensus 91 ~~~~~ll~~l~~~~~~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~~~~~~ 140 (166)
..+++.++++.+ .++|+||.+.. +..+|+++|+|++.+.++.-+
T Consensus 112 ~e~~~~i~~~~~---~G~~viVGg~~---~~~~A~~~gl~~v~i~sg~es 155 (176)
T PF06506_consen 112 EEIEAAIKQAKA---EGVDVIVGGGV---VCRLARKLGLPGVLIESGEES 155 (176)
T ss_dssp HHHHHHHHHHHH---TT--EEEESHH---HHHHHHHTTSEEEESS--HHH
T ss_pred HHHHHHHHHHHH---cCCcEEECCHH---HHHHHHHcCCcEEEEEecHHH
Confidence 456777777664 57999999985 478999999999988775443
No 152
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=75.18 E-value=4.8 Score=29.17 Aligned_cols=41 Identities=12% Similarity=0.169 Sum_probs=31.7
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhH
Q 043556 4 PHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQR 45 (166)
Q Consensus 4 ~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~ 45 (166)
.||++.-.++.|=+. ..++.+.|.++|++|.++.++...+.
T Consensus 2 k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~f 42 (182)
T PRK07313 2 KNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKF 42 (182)
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHH
Confidence 467777666655444 89999999999999999998875444
No 153
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=75.08 E-value=4.5 Score=29.49 Aligned_cols=39 Identities=15% Similarity=0.079 Sum_probs=30.5
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcch
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNH 43 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~ 43 (166)
||++.-.++.|=+.-.+++.++|.++|++|+++.++...
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~ 40 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQ 40 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHH
Confidence 566666666666666679999999999999999988654
No 154
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=74.97 E-value=39 Score=26.59 Aligned_cols=105 Identities=11% Similarity=0.126 Sum_probs=65.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHC--CCEEEEEeCCcchhHHHhhhccCCCCCCCee-eeecCCCCCCCcCchhHHHH
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANH--GVRVTFVNSEYNHQRVLKSLEGKNNLEEKIR-LVSIPDGMEPWEDRNELGNK 81 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~r--Gh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~-~~~l~~~~~~~~~~~~~~~~ 81 (166)
||+++-..+.|++.-+..+.+.|+++ +.+|++++......-++.+ |.+. +..++..... ....
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------p~vd~vi~~~~~~~~----~~~~-- 66 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN--------PDINALYGLDRKKAK----AGER-- 66 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC--------CCccEEEEeChhhhc----chHH--
Confidence 58999999999999999999999996 8999999998776555432 4554 2333311100 0000
Q ss_pred HHHHHhhccHHHHHHHHHHhhcCCCCccEEEecCccchHHHHHHHhCCceEE
Q 043556 82 LKKILQVMPGNLEELIEEINEKEDEKIDCFIADAYMGWTMRIAEKMKLRRGV 133 (166)
Q Consensus 82 ~~~~~~~~~~~~~~ll~~l~~~~~~~~d~iI~D~~~~~~~~vA~~l~iP~i~ 133 (166)
.+. ...++++.+.+ .+||++|.=........++...|+|.-.
T Consensus 67 --~~~-----~~~~l~~~lr~---~~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 67 --KLA-----NQFHLIKVLRA---NRYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred --HHH-----HHHHHHHHHHh---CCCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 111 11223444442 6899988432223356677777888544
No 155
>PRK06904 replicative DNA helicase; Validated
Probab=74.84 E-value=50 Score=27.74 Aligned_cols=41 Identities=15% Similarity=0.227 Sum_probs=33.6
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHH-CCCEEEEEeCCcchhHH
Q 043556 6 VLVIPAPAQGHVIPLLEFSQCLAN-HGVRVTFVNSEYNHQRV 46 (166)
Q Consensus 6 il~~~~p~~GH~~P~l~la~~L~~-rGh~Vt~~t~~~~~~~~ 46 (166)
+++..-|+.|=-.-++.+|...+. .|+.|.+++.+-....+
T Consensus 224 iiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql 265 (472)
T PRK06904 224 IIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQI 265 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 566778899999999999998875 59999999988765554
No 156
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=74.80 E-value=9.1 Score=29.22 Aligned_cols=46 Identities=13% Similarity=0.283 Sum_probs=38.4
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhh
Q 043556 4 PHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKS 49 (166)
Q Consensus 4 ~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~ 49 (166)
..++++-.||.|=-.=...++.+|..+|+.|+|++.......+...
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH
Confidence 4678888888888888899999999999999999998876666544
No 157
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=74.79 E-value=5.6 Score=30.97 Aligned_cols=47 Identities=11% Similarity=0.242 Sum_probs=34.7
Q ss_pred cHHHHHHHHHHhhcCCCCccEEEecCccch-----HHHHHHHhCCceEEEccc
Q 043556 90 PGNLEELIEEINEKEDEKIDCFIADAYMGW-----TMRIAEKMKLRRGVVWPS 137 (166)
Q Consensus 90 ~~~~~~ll~~l~~~~~~~~d~iI~D~~~~~-----~~~vA~~l~iP~i~~~~~ 137 (166)
.+.++++++++-+.+ .++-+||.|.|... ..++|.+.+||++.+.-.
T Consensus 132 ~p~IKE~vR~~I~~A-~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYiLLD~ 183 (284)
T PF07894_consen 132 QPHIKEVVRRMIQQA-QKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYILLDE 183 (284)
T ss_pred CCCHHHHHHHHHHHh-cceeEEEeeccccHHHHHHHHHHHHhcCCcEEEEech
Confidence 356788887765554 78999999998742 345677999999996543
No 158
>PRK08006 replicative DNA helicase; Provisional
Probab=74.60 E-value=50 Score=27.70 Aligned_cols=41 Identities=15% Similarity=0.248 Sum_probs=33.4
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHH-CCCEEEEEeCCcchhHH
Q 043556 6 VLVIPAPAQGHVIPLLEFSQCLAN-HGVRVTFVNSEYNHQRV 46 (166)
Q Consensus 6 il~~~~p~~GH~~P~l~la~~L~~-rGh~Vt~~t~~~~~~~~ 46 (166)
+++..-|+.|=-.-.+.+|...+. .|+.|-|++.+-....+
T Consensus 227 iiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql 268 (471)
T PRK08006 227 IIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQI 268 (471)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 566778899999999999999884 69999999888655444
No 159
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=74.45 E-value=4.1 Score=29.68 Aligned_cols=45 Identities=24% Similarity=0.231 Sum_probs=29.7
Q ss_pred CCh-HHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecC
Q 043556 15 GHV-IPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIP 66 (166)
Q Consensus 15 GH~-~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 66 (166)
|-+ .-.-+|+..|+++||+|||.......+.....+ .+++...+|
T Consensus 17 GGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~y-------~gv~l~~i~ 62 (185)
T PF09314_consen 17 GGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEFEY-------NGVRLVYIP 62 (185)
T ss_pred CcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCccc-------CCeEEEEeC
Confidence 444 445678888999999999998765432222222 477777765
No 160
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.18 E-value=22 Score=29.30 Aligned_cols=44 Identities=9% Similarity=0.217 Sum_probs=37.2
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHh
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLK 48 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~ 48 (166)
-|+|+-.-+.|-...+-.+|..+.++|+.+.+++.+-+...+..
T Consensus 103 VimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfD 146 (483)
T KOG0780|consen 103 VIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFD 146 (483)
T ss_pred EEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHH
Confidence 46778888889999999999999999999999998876554433
No 161
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=73.98 E-value=5.1 Score=28.01 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=18.8
Q ss_pred HHHHHHHHHCCCEEEEEeCCc
Q 043556 21 LEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 21 l~la~~L~~rGh~Vt~~t~~~ 41 (166)
..+|..|+++||+|++.+...
T Consensus 12 ~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 12 TALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp HHHHHHHHHCTEEEEEETSCH
T ss_pred HHHHHHHHHcCCEEEEEeccH
Confidence 478999999999999999875
No 162
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=73.58 E-value=31 Score=24.87 Aligned_cols=39 Identities=15% Similarity=0.339 Sum_probs=28.8
Q ss_pred CCEEEEEcCC--CCCChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 3 NPHVLVIPAP--AQGHVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 3 ~~~il~~~~p--~~GH~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
.+|++.++.+ +.|=-.-...||..|+++|++|.++=...
T Consensus 16 ~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~ 56 (204)
T TIGR01007 16 EIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDM 56 (204)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 3555555543 45677889999999999999998875543
No 163
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=73.20 E-value=31 Score=28.59 Aligned_cols=41 Identities=15% Similarity=0.262 Sum_probs=34.6
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHH-HCCCEEEEEeCCcchhH
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLA-NHGVRVTFVNSEYNHQR 45 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~-~rGh~Vt~~t~~~~~~~ 45 (166)
-++++..+|.|=......||..|. ++|.+|.++..+.+...
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~ 142 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA 142 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH
Confidence 467777888899999999999997 58999999998876544
No 164
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=73.08 E-value=7.5 Score=30.37 Aligned_cols=43 Identities=21% Similarity=0.219 Sum_probs=37.8
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHHC--CCEEEEEeCCcchhHH
Q 043556 4 PHVLVIPAPAQGHVIPLLEFSQCLANH--GVRVTFVNSEYNHQRV 46 (166)
Q Consensus 4 ~~il~~~~p~~GH~~P~l~la~~L~~r--Gh~Vt~~t~~~~~~~~ 46 (166)
+||+++-..+.|++.-...+.+.|+++ +.+||+++........
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~ 45 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIP 45 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHH
Confidence 489999999999999999999999996 9999999987665444
No 165
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=73.02 E-value=27 Score=29.03 Aligned_cols=44 Identities=14% Similarity=0.290 Sum_probs=38.2
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHh
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLK 48 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~ 48 (166)
-|+++-.-|.|-....-.||+.|.++|++|-+++.+-+.+.+..
T Consensus 102 vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~e 145 (451)
T COG0541 102 VILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIE 145 (451)
T ss_pred EEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHH
Confidence 57888888999999999999999999999999999877655443
No 166
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=72.94 E-value=6.6 Score=30.24 Aligned_cols=38 Identities=13% Similarity=0.132 Sum_probs=28.4
Q ss_pred EEEEEcCC---CCCChHHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 5 HVLVIPAP---AQGHVIPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 5 ~il~~~~p---~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
||++++.- ..|--.-...++++|+++||+|++++....
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 41 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAAL 41 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecc
Confidence 35555433 236668889999999999999999986543
No 167
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=72.89 E-value=5.6 Score=31.12 Aligned_cols=36 Identities=25% Similarity=0.301 Sum_probs=28.5
Q ss_pred CCCCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 1 MSNPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 1 ~~~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
|.+++|+++-.++.| .-+|..|++.||+|+++.-..
T Consensus 3 ~~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 3 SETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC
Confidence 456899999777666 346788999999999998754
No 168
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=71.87 E-value=4.9 Score=32.92 Aligned_cols=36 Identities=17% Similarity=0.402 Sum_probs=27.4
Q ss_pred EEEEEcCC-C--CCChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 5 HVLVIPAP-A--QGHVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 5 ~il~~~~p-~--~GH~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
.+.+=|++ . -||+.|+..| +.|++.||+|+++....
T Consensus 36 Y~GfDPTa~slHlGhlv~l~kL-~~fQ~aGh~~ivLigd~ 74 (401)
T COG0162 36 YIGFDPTAPSLHLGHLVPLMKL-RRFQDAGHKPIVLIGDA 74 (401)
T ss_pred EEeeCCCCCccchhhHHHHHHH-HHHHHCCCeEEEEeccc
Confidence 45555555 2 3999998877 67999999999988753
No 169
>PRK04940 hypothetical protein; Provisional
Probab=71.64 E-value=14 Score=26.75 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=28.8
Q ss_pred CccEEEecCc-cchHHHHHHHhCCceEEEccccHHHH
Q 043556 107 KIDCFIADAY-MGWTMRIAEKMKLRRGVVWPSSAASV 142 (166)
Q Consensus 107 ~~d~iI~D~~-~~~~~~vA~~l~iP~i~~~~~~~~~~ 142 (166)
++.++|...+ .+|+.-+|+++|+|.|.++|..-...
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv~P~~ 96 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPNLFPEE 96 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCCCChHH
Confidence 4578886654 47899999999999999999876543
No 170
>PLN02501 digalactosyldiacylglycerol synthase
Probab=71.63 E-value=69 Score=28.69 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=29.2
Q ss_pred CCEEEEEcCCCC-----CChHHHHHHHHHHHHC-CCEEEEEeCCcc
Q 043556 3 NPHVLVIPAPAQ-----GHVIPLLEFSQCLANH-GVRVTFVNSEYN 42 (166)
Q Consensus 3 ~~~il~~~~p~~-----GH~~P~l~la~~L~~r-Gh~Vt~~t~~~~ 42 (166)
+.||.++|.++. --+||+++-|- |+++ |++||++.+--.
T Consensus 322 ~r~~~ivTtAslPWmTGtavnpL~rAay-La~~~~~~VtlviPWl~ 366 (794)
T PLN02501 322 KRHVAIVTTASLPWMTGTAVNPLFRAAY-LAKSAKQNVTLLVPWLC 366 (794)
T ss_pred CCeEEEEEcccCcccccccccHHHHHHH-hcccCCceEEEEEecCC
Confidence 468888887663 45799999665 4555 899999998643
No 171
>PRK11519 tyrosine kinase; Provisional
Probab=71.50 E-value=73 Score=28.23 Aligned_cols=116 Identities=17% Similarity=0.248 Sum_probs=65.6
Q ss_pred CEEEEEcC--CCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCC-C-------------------CCCCee
Q 043556 4 PHVLVIPA--PAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKN-N-------------------LEEKIR 61 (166)
Q Consensus 4 ~~il~~~~--p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~-~-------------------~~~~i~ 61 (166)
.+++++++ |+.|=-.-...||..|+.+|++|-++-.+.....+........ . ..+++.
T Consensus 526 ~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~~~l~ 605 (719)
T PRK11519 526 NNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIANFD 605 (719)
T ss_pred ceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCcCCEE
Confidence 46666665 5678888999999999999999998866543332222111000 0 001111
Q ss_pred eeecCCCCCCCcCchhHHHHHHHHHhhccHHHHHHHHHHhhcCCCCccEEEecCc--c--chHHHHHHHhCCceEEEc
Q 043556 62 LVSIPDGMEPWEDRNELGNKLKKILQVMPGNLEELIEEINEKEDEKIDCFIADAY--M--GWTMRIAEKMKLRRGVVW 135 (166)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~iI~D~~--~--~~~~~vA~~l~iP~i~~~ 135 (166)
+ +|.+ ....+..+.+ ....++++++.+. .++|.||.|.- . ..+..+++..+...++.-
T Consensus 606 ~--lp~g----~~~~~~~ell------~s~~~~~ll~~l~----~~yD~ViiDtpP~~~v~Da~~l~~~~d~~l~Vvr 667 (719)
T PRK11519 606 L--IPRG----QVPPNPSELL------MSERFAELVNWAS----KNYDLVLIDTPPILAVTDAAIVGRHVGTTLMVAR 667 (719)
T ss_pred E--EeCC----CCCCCHHHHh------hHHHHHHHHHHHH----hcCCEEEEeCCCcccchHHHHHHHHCCeEEEEEe
Confidence 1 1111 1111222221 1234677777765 47999999963 2 236678888886665544
No 172
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=71.29 E-value=61 Score=27.21 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=37.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHh
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLK 48 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~ 48 (166)
-+++.-.|+.|=-.-.++++.+.+++|.+|.+++.+....++..
T Consensus 265 ~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~ 308 (484)
T TIGR02655 265 IILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLR 308 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHH
Confidence 46777788889999999999999999999999999887666544
No 173
>PRK05748 replicative DNA helicase; Provisional
Probab=71.19 E-value=58 Score=26.94 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=34.1
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHH-CCCEEEEEeCCcchhHH
Q 043556 6 VLVIPAPAQGHVIPLLEFSQCLAN-HGVRVTFVNSEYNHQRV 46 (166)
Q Consensus 6 il~~~~p~~GH~~P~l~la~~L~~-rGh~Vt~~t~~~~~~~~ 46 (166)
+++...|+.|=-.-.+.++...+. +|..|.+++.+-....+
T Consensus 206 ivIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l 247 (448)
T PRK05748 206 IIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESL 247 (448)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHH
Confidence 567778899999999999999874 59999999988765554
No 174
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=70.98 E-value=3.1 Score=31.69 Aligned_cols=43 Identities=14% Similarity=0.164 Sum_probs=31.4
Q ss_pred CccEEE-ecCccc-hHHHHHHHhCCceEEEccccHHHHHHHhccc
Q 043556 107 KIDCFI-ADAYMG-WTMRIAEKMKLRRGVVWPSSAASVALCFRIP 149 (166)
Q Consensus 107 ~~d~iI-~D~~~~-~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~ 149 (166)
-||+++ .|+-.- -+..-|.++|||+|.+.=+.+..-.+.+.+|
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~dpd~VD~~IP 200 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNCDPDGVDYVIP 200 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCCCCccCceeec
Confidence 388655 888775 4677899999999999877765544444444
No 175
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=70.59 E-value=33 Score=23.81 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=24.4
Q ss_pred cCCCCCChHHHHHHHHHHHHCCCEEEEE
Q 043556 10 PAPAQGHVIPLLEFSQCLANHGVRVTFV 37 (166)
Q Consensus 10 ~~p~~GH~~P~l~la~~L~~rGh~Vt~~ 37 (166)
+.++.|--.-.+.|++.|+++|.+|-++
T Consensus 5 t~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 4566788889999999999999999886
No 176
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=70.15 E-value=12 Score=30.04 Aligned_cols=31 Identities=13% Similarity=-0.051 Sum_probs=22.7
Q ss_pred CCccEEE-ecC--ccchHHHHHHHh--CCceEEEcc
Q 043556 106 EKIDCFI-ADA--YMGWTMRIAEKM--KLRRGVVWP 136 (166)
Q Consensus 106 ~~~d~iI-~D~--~~~~~~~vA~~l--~iP~i~~~~ 136 (166)
.+||++| .|. |......-+++. |||++.+.+
T Consensus 75 ~~pd~~i~iD~p~Fnl~lak~~k~~~~~i~viyyi~ 110 (347)
T PRK14089 75 KQADKVLLMDSSSFNIPLAKKIKKAYPKKEIIYYIL 110 (347)
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEEC
Confidence 4789887 786 555566677888 799887654
No 177
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=70.04 E-value=3.8 Score=30.35 Aligned_cols=33 Identities=9% Similarity=0.066 Sum_probs=25.4
Q ss_pred CccEEE-ecCccc-hHHHHHHHhCCceEEEccccH
Q 043556 107 KIDCFI-ADAYMG-WTMRIAEKMKLRRGVVWPSSA 139 (166)
Q Consensus 107 ~~d~iI-~D~~~~-~~~~vA~~l~iP~i~~~~~~~ 139 (166)
.||+|| .|+... -+..-|.++|||.|.+.=+..
T Consensus 114 ~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn~ 148 (204)
T PRK04020 114 EPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTDN 148 (204)
T ss_pred CCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCCC
Confidence 577665 888764 477789999999999875544
No 178
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=69.67 E-value=10 Score=25.92 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=20.8
Q ss_pred HHHHHHHHCCCEEEEEeCCcchhHHHh
Q 043556 22 EFSQCLANHGVRVTFVNSEYNHQRVLK 48 (166)
Q Consensus 22 ~la~~L~~rGh~Vt~~t~~~~~~~~~~ 48 (166)
-+|..|+++||+|++++.....+.+.+
T Consensus 12 ~~a~~L~~~g~~V~l~~r~~~~~~~~~ 38 (151)
T PF02558_consen 12 LYAARLAQAGHDVTLVSRSPRLEAIKE 38 (151)
T ss_dssp HHHHHHHHTTCEEEEEESHHHHHHHHH
T ss_pred HHHHHHHHCCCceEEEEccccHHhhhh
Confidence 478899999999999998873344433
No 179
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=69.57 E-value=6.8 Score=28.35 Aligned_cols=40 Identities=23% Similarity=0.399 Sum_probs=28.3
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHH
Q 043556 6 VLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRV 46 (166)
Q Consensus 6 il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~ 46 (166)
|++.-.++-|-+. ..++.++|.++|++|.++.++...+.+
T Consensus 2 illgvtGsiaa~k-a~~lir~L~~~g~~V~vv~T~~A~~fv 41 (181)
T TIGR00421 2 IVVAMTGASGVIY-GIRLLEVLKEAGVEVHLVISDWAKETI 41 (181)
T ss_pred EEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECccHHHHH
Confidence 3444444444443 378999999999999999998765554
No 180
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=69.43 E-value=12 Score=30.02 Aligned_cols=38 Identities=21% Similarity=0.273 Sum_probs=25.4
Q ss_pred HHHHHHHHhhcCCCCccEEEecCccch----------HHHHHHHhCCceEE
Q 043556 93 LEELIEEINEKEDEKIDCFIADAYMGW----------TMRIAEKMKLRRGV 133 (166)
Q Consensus 93 ~~~ll~~l~~~~~~~~d~iI~D~~~~~----------~~~vA~~l~iP~i~ 133 (166)
.+++++-+++ .+||++|+.+.+.. +..+.++++||+++
T Consensus 69 ~~~i~~mv~~---~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vt 116 (349)
T PF07355_consen 69 LKKILEMVKK---LKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVT 116 (349)
T ss_pred HHHHHHHHHh---cCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEE
Confidence 4444444443 58999999985421 13367789999997
No 181
>PRK07004 replicative DNA helicase; Provisional
Probab=69.19 E-value=67 Score=26.85 Aligned_cols=41 Identities=17% Similarity=0.296 Sum_probs=33.7
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHH-CCCEEEEEeCCcchhHH
Q 043556 6 VLVIPAPAQGHVIPLLEFSQCLAN-HGVRVTFVNSEYNHQRV 46 (166)
Q Consensus 6 il~~~~p~~GH~~P~l~la~~L~~-rGh~Vt~~t~~~~~~~~ 46 (166)
+++..-|+.|=-.-++.++...+. .|..|.+++.+-....+
T Consensus 216 iviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql 257 (460)
T PRK07004 216 IIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQL 257 (460)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHH
Confidence 566778899999999999998874 69999999988765554
No 182
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=69.00 E-value=9.4 Score=23.14 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHCCCEEEEEeCCc
Q 043556 19 PLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 19 P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
.-+++|..|+++|.+||++...+
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccc
Confidence 45789999999999999998765
No 183
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=68.84 E-value=13 Score=23.69 Aligned_cols=36 Identities=22% Similarity=0.225 Sum_probs=26.6
Q ss_pred CccEEE--ecCcc---ch-HHHHHHHhCCceEEEccccHHHH
Q 043556 107 KIDCFI--ADAYM---GW-TMRIAEKMKLRRGVVWPSSAASV 142 (166)
Q Consensus 107 ~~d~iI--~D~~~---~~-~~~vA~~l~iP~i~~~~~~~~~~ 142 (166)
+.|+|| .|... .| +...|++.++|++.....+...+
T Consensus 48 ~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~l 89 (97)
T PF10087_consen 48 KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSSL 89 (97)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 567765 77754 23 57789999999999986666654
No 184
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=68.07 E-value=10 Score=27.34 Aligned_cols=40 Identities=15% Similarity=0.138 Sum_probs=29.5
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhH
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQR 45 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~ 45 (166)
||++.-.++ +...-..++.+.|.++|++|.++.++...+.
T Consensus 2 ~I~lgvtGs-~~a~~~~~ll~~L~~~g~~V~vi~T~~A~~f 41 (177)
T TIGR02113 2 KILLAVTGS-IAAYKAADLTSQLTKLGYDVTVLMTQAATQF 41 (177)
T ss_pred EEEEEEcCH-HHHHHHHHHHHHHHHCCCEEEEEEChHHHhh
Confidence 455555555 4455667999999999999999998865443
No 185
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=67.71 E-value=16 Score=27.36 Aligned_cols=46 Identities=13% Similarity=0.013 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhcCCCCccEEEecCccch--HH-HHHHHhCCceEEEccccHH
Q 043556 92 NLEELIEEINEKEDEKIDCFIADAYMGW--TM-RIAEKMKLRRGVVWPSSAA 140 (166)
Q Consensus 92 ~~~~ll~~l~~~~~~~~d~iI~D~~~~~--~~-~vA~~l~iP~i~~~~~~~~ 140 (166)
.+.+.-+.+.+ ...|+|+.|++.+. .. .+++..|+|++.-...-+.
T Consensus 166 ~l~~Aa~~L~~---~gadlIvLDCmGYt~~~r~~~~~~~g~PVlLsr~lvAr 214 (221)
T PF07302_consen 166 ELAAAARELAE---QGADLIVLDCMGYTQEMRDIVQRALGKPVLLSRTLVAR 214 (221)
T ss_pred HHHHHHHHHHh---cCCCEEEEECCCCCHHHHHHHHHHhCCCEEeHHHHHHH
Confidence 34444555543 68999999997653 33 4788899999876555443
No 186
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=67.58 E-value=12 Score=27.01 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=25.0
Q ss_pred CChHH-HHHHHHHHHH-CCCEEEEEeCCcchh
Q 043556 15 GHVIP-LLEFSQCLAN-HGVRVTFVNSEYNHQ 44 (166)
Q Consensus 15 GH~~P-~l~la~~L~~-rGh~Vt~~t~~~~~~ 44 (166)
||... ..++.++|++ +|++|.++.++...+
T Consensus 10 g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~ 41 (174)
T TIGR02699 10 GDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQ 41 (174)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEECHhHHH
Confidence 88866 8899999985 699999999987554
No 187
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=67.47 E-value=4.8 Score=30.93 Aligned_cols=44 Identities=14% Similarity=0.182 Sum_probs=33.0
Q ss_pred CCccEEE-ecCccc-hHHHHHHHhCCceEEEccccHHHHHHHhccc
Q 043556 106 EKIDCFI-ADAYMG-WTMRIAEKMKLRRGVVWPSSAASVALCFRIP 149 (166)
Q Consensus 106 ~~~d~iI-~D~~~~-~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~ 149 (166)
..||+|| .|+-.. .+..-|.++|||+|.+.=+....-.+.+.+|
T Consensus 156 ~~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn~dp~~IdypIP 201 (258)
T PRK05299 156 GLPDALFVVDPNKEHIAVKEARKLGIPVVAIVDTNCDPDGVDYPIP 201 (258)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCCCCCcccceeee
Confidence 3588766 787654 5778899999999999877776555555555
No 188
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=67.23 E-value=4.3 Score=29.87 Aligned_cols=35 Identities=6% Similarity=0.088 Sum_probs=26.2
Q ss_pred CccEEE-ecCccc-hHHHHHHHhCCceEEEccccHHH
Q 043556 107 KIDCFI-ADAYMG-WTMRIAEKMKLRRGVVWPSSAAS 141 (166)
Q Consensus 107 ~~d~iI-~D~~~~-~~~~vA~~l~iP~i~~~~~~~~~ 141 (166)
.||+|| .|+... -+..-|.++|||.|.+.=+....
T Consensus 108 ~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn~dp 144 (196)
T TIGR01012 108 EPEVVVVTDPRADHQALKEASEVGIPIVALCDTDNPL 144 (196)
T ss_pred CCCEEEEECCccccHHHHHHHHcCCCEEEEeeCCCCC
Confidence 467655 888764 47789999999999987655543
No 189
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=67.22 E-value=8.9 Score=22.78 Aligned_cols=21 Identities=33% Similarity=0.357 Sum_probs=16.9
Q ss_pred HHHHHHHHHCCCEEEEEeCCc
Q 043556 21 LEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 21 l~la~~L~~rGh~Vt~~t~~~ 41 (166)
+..|..|+++|++|+++=..+
T Consensus 9 l~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHCCCcEEEEecCc
Confidence 457889999999999986543
No 190
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=66.57 E-value=5.1 Score=30.11 Aligned_cols=44 Identities=14% Similarity=0.138 Sum_probs=33.4
Q ss_pred CCccEEE-ecCcc-chHHHHHHHhCCceEEEccccHHHHHHHhccc
Q 043556 106 EKIDCFI-ADAYM-GWTMRIAEKMKLRRGVVWPSSAASVALCFRIP 149 (166)
Q Consensus 106 ~~~d~iI-~D~~~-~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~ 149 (166)
..||+|| .|+-. ..+..-|.++|||.|.+.=+....-.+.+.+|
T Consensus 154 ~~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn~~p~~idypIP 199 (225)
T TIGR01011 154 KLPDLLFVIDPVKEKIAVAEARKLGIPVVAIVDTNCDPDLVDYPIP 199 (225)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHcCCCEEEEeeCCCCCcccceeee
Confidence 4688766 78765 45788899999999999887776655666665
No 191
>PLN02891 IMP cyclohydrolase
Probab=65.94 E-value=19 Score=30.66 Aligned_cols=43 Identities=9% Similarity=0.154 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCC--CCCC
Q 043556 18 IPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPD--GMEP 71 (166)
Q Consensus 18 ~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~--~~~~ 71 (166)
.=+.+||+.|.+.|.+ ++++....+.++.. +|.+..+.+ ++|+
T Consensus 33 tgi~~fAk~L~~~gve--IiSTgGTak~L~e~---------Gi~v~~Vsd~TgfPE 77 (547)
T PLN02891 33 TDLALLANGLQELGYT--IVSTGGTASALEAA---------GVSVTKVEELTNFPE 77 (547)
T ss_pred cCHHHHHHHHHHCCCE--EEEcchHHHHHHHc---------CCceeeHHhccCCch
Confidence 3478999999999855 78888887777654 787777654 4444
No 192
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=65.92 E-value=11 Score=26.09 Aligned_cols=32 Identities=16% Similarity=0.068 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHCCCEEEEEeCCcchhHHHh
Q 043556 17 VIPLLEFSQCLANHGVRVTFVNSEYNHQRVLK 48 (166)
Q Consensus 17 ~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~ 48 (166)
.--.+=++..|.++||+|++..++...+.++-
T Consensus 13 ~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~v 44 (139)
T PF09001_consen 13 TPSALYLSYKLKKKGFEVVVAGNPAALKLLEV 44 (139)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEE-HHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCeEEEecCHHHHhHhhh
Confidence 34456788899999999999999876665543
No 193
>CHL00067 rps2 ribosomal protein S2
Probab=65.52 E-value=6.2 Score=29.73 Aligned_cols=44 Identities=16% Similarity=0.117 Sum_probs=33.3
Q ss_pred CCccEEE-ecCccc-hHHHHHHHhCCceEEEccccHHHHHHHhccc
Q 043556 106 EKIDCFI-ADAYMG-WTMRIAEKMKLRRGVVWPSSAASVALCFRIP 149 (166)
Q Consensus 106 ~~~d~iI-~D~~~~-~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~ 149 (166)
..||+|| .|+-.. -+..-|.++|||.|.+.=+....-.+.+.+|
T Consensus 160 ~~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~~p~~idypIP 205 (230)
T CHL00067 160 KLPDIVIIIDQQEEYTALRECRKLGIPTISILDTNCDPDLADIPIP 205 (230)
T ss_pred cCCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCCCccccceeee
Confidence 4688766 777654 5778899999999999887776655666655
No 194
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=65.41 E-value=23 Score=23.14 Aligned_cols=41 Identities=17% Similarity=0.130 Sum_probs=33.5
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHH
Q 043556 6 VLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRV 46 (166)
Q Consensus 6 il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~ 46 (166)
++..+.++..|-....-++..|.++|++|.++......+.+
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~ 42 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEI 42 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHH
Confidence 56777888899999999999999999999998765443333
No 195
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=64.97 E-value=11 Score=29.72 Aligned_cols=34 Identities=24% Similarity=0.272 Sum_probs=26.8
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
.+||+++-.+..| ..+|..|+++||+|+++....
T Consensus 2 ~mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 2 MARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred CceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecHH
Confidence 4688888777666 357889999999999988643
No 196
>PRK08840 replicative DNA helicase; Provisional
Probab=64.79 E-value=84 Score=26.35 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=33.5
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHH-CCCEEEEEeCCcchhHH
Q 043556 6 VLVIPAPAQGHVIPLLEFSQCLAN-HGVRVTFVNSEYNHQRV 46 (166)
Q Consensus 6 il~~~~p~~GH~~P~l~la~~L~~-rGh~Vt~~t~~~~~~~~ 46 (166)
+++..-|+.|=-.-.+.+|...+. .|+.|.+++.+-....+
T Consensus 220 iviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~~ql 261 (464)
T PRK08840 220 IIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQL 261 (464)
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCHHHH
Confidence 566778899999999999999874 59999999988665554
No 197
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=64.41 E-value=16 Score=25.11 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=23.3
Q ss_pred CCChHHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 14 QGHVIPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 14 ~GH~~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
+-.+.-.+=++.+|.++|++||+..++..
T Consensus 15 P~qissaiYls~klkkkgf~v~VaateAa 43 (148)
T COG4081 15 PPQISSAIYLSHKLKKKGFDVTVAATEAA 43 (148)
T ss_pred CccchHHHHHHHHhhccCccEEEecCHhh
Confidence 34555667789999999999999988754
No 198
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=64.37 E-value=20 Score=29.09 Aligned_cols=35 Identities=29% Similarity=0.341 Sum_probs=24.2
Q ss_pred HHHHHHHHhhcCCCCccEEE-ecC--ccchHHHHHHHhCCc
Q 043556 93 LEELIEEINEKEDEKIDCFI-ADA--YMGWTMRIAEKMKLR 130 (166)
Q Consensus 93 ~~~ll~~l~~~~~~~~d~iI-~D~--~~~~~~~vA~~l~iP 130 (166)
++++.+.+.+ .+||++| .|. |..-....+++.|+|
T Consensus 71 ~~~~~~~~~~---~~pd~vIlID~pgFNlrlak~lk~~~~~ 108 (373)
T PF02684_consen 71 FRKLVERIKE---EKPDVVILIDYPGFNLRLAKKLKKRGIP 108 (373)
T ss_pred HHHHHHHHHH---cCCCEEEEeCCCCccHHHHHHHHHhCCC
Confidence 3444444443 6899877 886 555577788999998
No 199
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=64.30 E-value=9.7 Score=29.08 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=19.5
Q ss_pred HHHHHHHHCCCEEEEEeCCcchhHHH
Q 043556 22 EFSQCLANHGVRVTFVNSEYNHQRVL 47 (166)
Q Consensus 22 ~la~~L~~rGh~Vt~~t~~~~~~~~~ 47 (166)
-+|..|++.||+||+++-....+.+.
T Consensus 5 ~~a~~L~~~G~~V~l~~r~~~~~~i~ 30 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARGEQLEALN 30 (293)
T ss_pred HHHHHHHhCCCcEEEEecHHHHHHHH
Confidence 36889999999999998764344443
No 200
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=64.10 E-value=77 Score=25.72 Aligned_cols=41 Identities=27% Similarity=0.444 Sum_probs=32.9
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHH
Q 043556 6 VLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRV 46 (166)
Q Consensus 6 il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~ 46 (166)
+++.--|+.|=-.-+++++..++.+|.+|.+++.+....++
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi 125 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQI 125 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHH
Confidence 45566677888899999999999999999999887655544
No 201
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=63.65 E-value=14 Score=31.05 Aligned_cols=37 Identities=22% Similarity=0.451 Sum_probs=29.8
Q ss_pred CEEEEEcCCCCCChHHH------------HHHHHHHHHCCCEEEEEeCC
Q 043556 4 PHVLVIPAPAQGHVIPL------------LEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 4 ~~il~~~~p~~GH~~P~------------l~la~~L~~rGh~Vt~~t~~ 40 (166)
.||++...|+.=-+.|. ..||+++..||++||+++++
T Consensus 257 kkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp 305 (475)
T PRK13982 257 RRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGP 305 (475)
T ss_pred CEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCC
Confidence 57787777777777554 57899999999999999865
No 202
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=63.55 E-value=16 Score=29.86 Aligned_cols=43 Identities=16% Similarity=0.161 Sum_probs=33.5
Q ss_pred CCCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhH
Q 043556 2 SNPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQR 45 (166)
Q Consensus 2 ~~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~ 45 (166)
+..||++.-.++. ...=..++.++|.++|++|.++.++...+.
T Consensus 5 ~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~f 47 (399)
T PRK05579 5 AGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKF 47 (399)
T ss_pred CCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHH
Confidence 4567887777764 555778999999999999999998865433
No 203
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=63.50 E-value=35 Score=26.02 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhcCCCCccEEEecCccc--hHHHHHHHhCCceEEEccccHHHHHH
Q 043556 92 NLEELIEEINEKEDEKIDCFIADAYMG--WTMRIAEKMKLRRGVVWPSSAASVAL 144 (166)
Q Consensus 92 ~~~~ll~~l~~~~~~~~d~iI~D~~~~--~~~~vA~~l~iP~i~~~~~~~~~~~~ 144 (166)
.+.++.+.+++ .+..||+++.... .+..+|++.|+|.+.+-+..-....+
T Consensus 205 ~l~~l~~~ik~---~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~~~~y~~~ 256 (266)
T cd01018 205 DLKRLIDLAKE---KGVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPLAADWEEN 256 (266)
T ss_pred HHHHHHHHHHH---cCCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCcHHHHHHH
Confidence 35666666664 5899999998664 35679999999998887665433333
No 204
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=63.25 E-value=25 Score=26.58 Aligned_cols=46 Identities=28% Similarity=0.388 Sum_probs=39.9
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhh
Q 043556 4 PHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKS 49 (166)
Q Consensus 4 ~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~ 49 (166)
.-+++.-.|+.|.-.-.++++...+++|..|-+++.......+...
T Consensus 24 ~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~ 69 (260)
T COG0467 24 SVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLEN 69 (260)
T ss_pred cEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHH
Confidence 4578888999999999999999999999999999998876665443
No 205
>PRK05920 aromatic acid decarboxylase; Validated
Probab=63.07 E-value=19 Score=26.69 Aligned_cols=43 Identities=16% Similarity=0.185 Sum_probs=32.8
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHH
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRV 46 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~ 46 (166)
..||++.-.++ ....=..++.++|.+.|++|+++.+....+.+
T Consensus 3 ~krIllgITGs-iaa~ka~~lvr~L~~~g~~V~vi~T~~A~~fv 45 (204)
T PRK05920 3 MKRIVLAITGA-SGAIYGVRLLECLLAADYEVHLVISKAAQKVL 45 (204)
T ss_pred CCEEEEEEeCH-HHHHHHHHHHHHHHHCCCEEEEEEChhHHHHH
Confidence 35676665555 44467889999999999999999998765544
No 206
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=63.03 E-value=6.5 Score=30.04 Aligned_cols=34 Identities=12% Similarity=0.104 Sum_probs=25.2
Q ss_pred CccEEE-ecCccc-hHHHHHHHhCCceEEEccccHH
Q 043556 107 KIDCFI-ADAYMG-WTMRIAEKMKLRRGVVWPSSAA 140 (166)
Q Consensus 107 ~~d~iI-~D~~~~-~~~~vA~~l~iP~i~~~~~~~~ 140 (166)
.||+|| .|+... -+..-|.++|||+|.+.=+-..
T Consensus 118 ~P~llIV~Dp~~d~qAI~EA~~lnIPvIal~DTds~ 153 (249)
T PTZ00254 118 EPRLLIVTDPRTDHQAIREASYVNIPVIALCDTDSP 153 (249)
T ss_pred CCCEEEEeCCCcchHHHHHHHHhCCCEEEEecCCCC
Confidence 466554 898764 4677899999999998855443
No 207
>PRK11823 DNA repair protein RadA; Provisional
Probab=62.25 E-value=92 Score=25.93 Aligned_cols=41 Identities=29% Similarity=0.417 Sum_probs=34.3
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHH
Q 043556 6 VLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRV 46 (166)
Q Consensus 6 il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~ 46 (166)
+++.-.|+.|=-.-+++++..++++|.+|.+++.+.....+
T Consensus 83 ~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi 123 (446)
T PRK11823 83 VLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQI 123 (446)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHH
Confidence 45666778899999999999999999999999988765554
No 208
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=62.02 E-value=16 Score=29.90 Aligned_cols=43 Identities=16% Similarity=0.172 Sum_probs=33.4
Q ss_pred CCCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhH
Q 043556 2 SNPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQR 45 (166)
Q Consensus 2 ~~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~ 45 (166)
+..||++.-.++ +...-..++.+.|.++|++|+++.++...+.
T Consensus 2 ~~k~IllgiTGS-iaa~~~~~ll~~L~~~g~~V~vv~T~~A~~f 44 (390)
T TIGR00521 2 ENKKILLGVTGG-IAAYKTVELVRELVRQGAEVKVIMTEAAKKF 44 (390)
T ss_pred CCCEEEEEEeCH-HHHHHHHHHHHHHHhCCCEEEEEECHhHHHH
Confidence 456787777666 4456689999999999999999998865443
No 209
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=61.92 E-value=12 Score=31.04 Aligned_cols=31 Identities=16% Similarity=0.272 Sum_probs=25.6
Q ss_pred EEEcCCCCCChHHHHHHHHHHHHCCCEEEEE
Q 043556 7 LVIPAPAQGHVIPLLEFSQCLANHGVRVTFV 37 (166)
Q Consensus 7 l~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~ 37 (166)
+.-|..+.|-..-.+.|.++|++||++|.-+
T Consensus 5 IAg~~SG~GKTTvT~glm~aL~~rg~~Vqpf 35 (451)
T COG1797 5 IAGTSSGSGKTTVTLGLMRALRRRGLKVQPF 35 (451)
T ss_pred EecCCCCCcHHHHHHHHHHHHHhcCCccccc
Confidence 3445667799999999999999999998743
No 210
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=61.79 E-value=21 Score=29.53 Aligned_cols=38 Identities=16% Similarity=0.272 Sum_probs=25.3
Q ss_pred HHHHHHHhhcCCCCccEEEecCccch----------HHHHHHHhCCceEEE
Q 043556 94 EELIEEINEKEDEKIDCFIADAYMGW----------TMRIAEKMKLRRGVV 134 (166)
Q Consensus 94 ~~ll~~l~~~~~~~~d~iI~D~~~~~----------~~~vA~~l~iP~i~~ 134 (166)
+++++-+++ .+||++|+.+.+.. +..+.+++|||.++-
T Consensus 66 ~~i~~mv~k---~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~ 113 (431)
T TIGR01918 66 ARVLEMLKD---KEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTS 113 (431)
T ss_pred HHHHHHHHh---cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 444444443 68999999985421 123577899999984
No 211
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=61.66 E-value=21 Score=29.52 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=25.2
Q ss_pred HHHHHHHhhcCCCCccEEEecCccch----------HHHHHHHhCCceEEE
Q 043556 94 EELIEEINEKEDEKIDCFIADAYMGW----------TMRIAEKMKLRRGVV 134 (166)
Q Consensus 94 ~~ll~~l~~~~~~~~d~iI~D~~~~~----------~~~vA~~l~iP~i~~ 134 (166)
+++++-+++ .+||++|+.+.+.. +..+.+++|||.++-
T Consensus 66 ~~i~~mv~k---~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vta 113 (431)
T TIGR01917 66 AKVLEMIKG---ANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTA 113 (431)
T ss_pred HHHHHHHHh---cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 444444443 68999999985421 123577899999984
No 212
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=61.63 E-value=15 Score=30.11 Aligned_cols=36 Identities=25% Similarity=0.160 Sum_probs=27.5
Q ss_pred CCCCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 1 MSNPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 1 ~~~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
|+..+|.++-.+-.| +.+|..|+++||+|+.+-...
T Consensus 1 m~~~kI~VIGlG~~G-----~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 1 MSFETISVIGLGYIG-----LPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred CCccEEEEECcchhh-----HHHHHHHHhCCCEEEEEeCCH
Confidence 777888888554444 568899999999999886543
No 213
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=61.33 E-value=22 Score=28.10 Aligned_cols=39 Identities=8% Similarity=0.106 Sum_probs=28.9
Q ss_pred CEEEEEcCC--CCCCh-HHHHHHHHHHHHC--CCEEEEEeCCcc
Q 043556 4 PHVLVIPAP--AQGHV-IPLLEFSQCLANH--GVRVTFVNSEYN 42 (166)
Q Consensus 4 ~~il~~~~p--~~GH~-~P~l~la~~L~~r--Gh~Vt~~t~~~~ 42 (166)
+||+++... ..|=. .-++.+++.|.++ ||+|++++....
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~ 44 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRNDK 44 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCCC
Confidence 367776553 33445 7778999999999 899999887643
No 214
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=61.22 E-value=61 Score=26.26 Aligned_cols=63 Identities=17% Similarity=0.192 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhcCCCCccEEEecCcc-----chH-HHHHHHhCCceEEEccccHHHHHHHhccchhhhCCCc
Q 043556 91 GNLEELIEEINEKEDEKIDCFIADAYM-----GWT-MRIAEKMKLRRGVVWPSSAASVALCFRIPKLIDDGII 157 (166)
Q Consensus 91 ~~~~~ll~~l~~~~~~~~d~iI~D~~~-----~~~-~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (166)
+.++.++++ .+.+.|.+|.-.-. ... ..+++++++|.++..--+...+...+.+-+-.++|..
T Consensus 173 Pa~~~ll~~----~~~~idgfi~PGHVstI~G~~~y~~l~~~y~~P~VVaGFEp~DiL~ai~~lv~q~~~g~~ 241 (364)
T PRK15062 173 PAMRALLED----PELRIDGFIAPGHVSTIIGTEPYEFLAEEYGIPVVVAGFEPLDILQSILMLVRQLEEGRA 241 (364)
T ss_pred HHHHHHHcC----CCCCccEEEecCEeEEEeccchhHHHHHHcCCCeEEeccCHHHHHHHHHHHHHHHHCCCc
Confidence 444555543 23478988865421 122 4589999999999999998887777766655555544
No 215
>PRK07206 hypothetical protein; Provisional
Probab=61.13 E-value=80 Score=25.55 Aligned_cols=35 Identities=11% Similarity=0.102 Sum_probs=25.0
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
+.+++++-.... -..+++.+.++|+++.+++....
T Consensus 2 ~k~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~~ 36 (416)
T PRK07206 2 MKKVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSCL 36 (416)
T ss_pred CCeEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCCC
Confidence 346777765322 34688999999999998887643
No 216
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=60.53 E-value=47 Score=25.07 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=27.4
Q ss_pred CCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHH
Q 043556 13 AQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRV 46 (166)
Q Consensus 13 ~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~ 46 (166)
+.|--.-..+++..+...|++|++++++...+..
T Consensus 38 ~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~ref 71 (235)
T COG2874 38 GTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREF 71 (235)
T ss_pred CccHHHHHHHHHHHHHhCCceEEEEEechhHHHH
Confidence 3466667789999999999999999999765443
No 217
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.43 E-value=33 Score=26.14 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=30.1
Q ss_pred ccHHHHHHHHHHhhcCCCCccEEEecCccc---hHHHHHHHhCCceEE
Q 043556 89 MPGNLEELIEEINEKEDEKIDCFIADAYMG---WTMRIAEKMKLRRGV 133 (166)
Q Consensus 89 ~~~~~~~ll~~l~~~~~~~~d~iI~D~~~~---~~~~vA~~l~iP~i~ 133 (166)
..+.++.+++.+. +.++.+.|.... -+..+|++.|||++.
T Consensus 136 n~~aM~~~m~~Lk-----~r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 136 NEDAMEKLMEALK-----ERGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred cHHHHHHHHHHHH-----HCCeEEEcccccccchhhhhHhhcCCceee
Confidence 3455777888874 458889887553 467899999999986
No 218
>PLN02939 transferase, transferring glycosyl groups
Probab=59.91 E-value=23 Score=32.49 Aligned_cols=39 Identities=23% Similarity=0.321 Sum_probs=29.5
Q ss_pred CCEEEEEcCCC-----CCCh-HHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 3 NPHVLVIPAPA-----QGHV-IPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 3 ~~~il~~~~p~-----~GH~-~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
.+||+++++-. .|-+ .-.-.|.++|+++||+|.+++|..
T Consensus 481 ~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y 525 (977)
T PLN02939 481 GLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKY 525 (977)
T ss_pred CCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 47888876432 3444 455679999999999999999965
No 219
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.84 E-value=34 Score=24.59 Aligned_cols=46 Identities=11% Similarity=0.099 Sum_probs=31.7
Q ss_pred HHHHHHHHhhcC-CCCccEEEecCcc--------c--hHHHHHHHhCCceEEEcccc
Q 043556 93 LEELIEEINEKE-DEKIDCFIADAYM--------G--WTMRIAEKMKLRRGVVWPSS 138 (166)
Q Consensus 93 ~~~ll~~l~~~~-~~~~d~iI~D~~~--------~--~~~~vA~~l~iP~i~~~~~~ 138 (166)
++.++.++..-+ .+.||+|+..--+ . -+..+|+++|+|++-.+...
T Consensus 109 vrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~t 165 (219)
T KOG0081|consen 109 VRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACT 165 (219)
T ss_pred HHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecccc
Confidence 577888875432 3689999965321 1 25678999999998865543
No 220
>PRK09739 hypothetical protein; Provisional
Probab=59.68 E-value=36 Score=24.67 Aligned_cols=39 Identities=13% Similarity=0.084 Sum_probs=24.9
Q ss_pred CCCCEEEEEcCCCCCC--h-HHHHHHHHHHHHCCCEEEEEeC
Q 043556 1 MSNPHVLVIPAPAQGH--V-IPLLEFSQCLANHGVRVTFVNS 39 (166)
Q Consensus 1 ~~~~~il~~~~p~~GH--~-~P~l~la~~L~~rGh~Vt~~t~ 39 (166)
|..+||+++...-..+ - .-.-.+.+.+.++|++|+++--
T Consensus 1 ~~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL 42 (199)
T PRK09739 1 MQSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDL 42 (199)
T ss_pred CCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEh
Confidence 6667888885544332 2 2244556677778999997753
No 221
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=59.49 E-value=9.8 Score=30.90 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=25.0
Q ss_pred EEEcCC-C--CCChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 7 LVIPAP-A--QGHVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 7 l~~~~p-~--~GH~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
.+=|++ . -||+.|+..+ +.|++.||+|.++....
T Consensus 36 G~dPTg~~lHlGh~v~l~~l-~~lq~~G~~~~iligd~ 72 (377)
T TIGR00234 36 GFDPTAPSLHLGHLVPLLKL-RDFQQAGHEVIVLLGDA 72 (377)
T ss_pred eeCCCCCCccHHHHHHHHHH-HHHHHCCCcEEEEEecc
Confidence 444554 2 3999996665 68999999999987653
No 222
>PRK12342 hypothetical protein; Provisional
Probab=59.42 E-value=21 Score=27.41 Aligned_cols=31 Identities=10% Similarity=-0.010 Sum_probs=23.9
Q ss_pred CccEEEecCcc-c-----hHHHHHHHhCCceEEEccc
Q 043556 107 KIDCFIADAYM-G-----WTMRIAEKMKLRRGVVWPS 137 (166)
Q Consensus 107 ~~d~iI~D~~~-~-----~~~~vA~~l~iP~i~~~~~ 137 (166)
.||+|++.--. . .+..+|+.||+|++++...
T Consensus 109 ~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 109 GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 59999976433 1 2688999999999987654
No 223
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=59.40 E-value=46 Score=24.17 Aligned_cols=36 Identities=17% Similarity=0.149 Sum_probs=27.0
Q ss_pred cEEEecCcc-chHHHHHHHhCCceEEEccccHHHHHH
Q 043556 109 DCFIADAYM-GWTMRIAEKMKLRRGVVWPSSAASVAL 144 (166)
Q Consensus 109 d~iI~D~~~-~~~~~vA~~l~iP~i~~~~~~~~~~~~ 144 (166)
.++|...+- +++..+|+++++|.+.+.|..-....+
T Consensus 61 ~~liGSSlGG~~A~~La~~~~~~avLiNPav~p~~~l 97 (187)
T PF05728_consen 61 VVLIGSSLGGFYATYLAERYGLPAVLINPAVRPYELL 97 (187)
T ss_pred eEEEEEChHHHHHHHHHHHhCCCEEEEcCCCCHHHHH
Confidence 566755554 678899999999999998876655444
No 224
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=59.34 E-value=17 Score=25.53 Aligned_cols=33 Identities=27% Similarity=0.267 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCC
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~ 40 (166)
..+|+++-.+. --.+.++.|.+.|++||++.+.
T Consensus 13 ~~~vlVvGGG~-----va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 13 NKVVVIIGGGK-----IAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCEEEEECCCH-----HHHHHHHHHHhCCCEEEEEcCc
Confidence 35666664433 2377889999999999999644
No 225
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=58.87 E-value=37 Score=21.70 Aligned_cols=40 Identities=15% Similarity=0.283 Sum_probs=27.8
Q ss_pred CCCCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCC
Q 043556 1 MSNPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 1 ~~~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~ 40 (166)
|+..+|++++..|.|--.-.-.+=+.+.++|.++.+-...
T Consensus 1 ~~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~ 40 (95)
T TIGR00853 1 MNETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGS 40 (95)
T ss_pred CCccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEec
Confidence 5678999999999874333344445566789988776555
No 226
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=58.84 E-value=21 Score=25.92 Aligned_cols=43 Identities=21% Similarity=0.198 Sum_probs=33.2
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHH-CCCEEEEEeCCcchhHHH
Q 043556 4 PHVLVIPAPAQGHVIPLLEFSQCLAN-HGVRVTFVNSEYNHQRVL 47 (166)
Q Consensus 4 ~~il~~~~p~~GH~~P~l~la~~L~~-rGh~Vt~~t~~~~~~~~~ 47 (166)
.||++.-.++-| ..=..+++++|.+ .|++|+++.++...+.+.
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~ 45 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLA 45 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHH
Confidence 367777667656 5558999999999 599999999987655543
No 227
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=58.82 E-value=15 Score=23.79 Aligned_cols=29 Identities=21% Similarity=0.390 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHCCCEEEEEeCCcchhHH
Q 043556 18 IPLLEFSQCLANHGVRVTFVNSEYNHQRV 46 (166)
Q Consensus 18 ~P~l~la~~L~~rGh~Vt~~t~~~~~~~~ 46 (166)
.|.+.++++|.++|.+|.+.=+.-.....
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~ 45 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDEEEI 45 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHHHHH
T ss_pred CHHHHHHHHHHHCCCEEEEECCccChHHH
Confidence 79999999999999998887665444444
No 228
>PRK10481 hypothetical protein; Provisional
Probab=58.66 E-value=25 Score=26.42 Aligned_cols=45 Identities=11% Similarity=0.001 Sum_probs=31.2
Q ss_pred HHHHHHHHhhcCCCCccEEEecCccch---HHHHHHHhCCceEEEccccHH
Q 043556 93 LEELIEEINEKEDEKIDCFIADAYMGW---TMRIAEKMKLRRGVVWPSSAA 140 (166)
Q Consensus 93 ~~~ll~~l~~~~~~~~d~iI~D~~~~~---~~~vA~~l~iP~i~~~~~~~~ 140 (166)
+.+..+++.+ ...|+|+.|+..+. ...+.+.+|+|++.-....+.
T Consensus 171 l~~aa~~L~~---~gaD~Ivl~C~G~~~~~~~~le~~lg~PVI~~n~a~ar 218 (224)
T PRK10481 171 LIDAGKELLD---QGADVIVLDCLGYHQRHRDLLQKALDVPVLLSNVLVAR 218 (224)
T ss_pred HHHHHHHhhc---CCCCEEEEeCCCcCHHHHHHHHHHHCcCEEcHHHHHHH
Confidence 4444555542 57999999997643 345788899999986665553
No 229
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=58.56 E-value=13 Score=27.81 Aligned_cols=20 Identities=20% Similarity=0.297 Sum_probs=16.9
Q ss_pred HHHHHHHHHCCCEEEEEeCC
Q 043556 21 LEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 21 l~la~~L~~rGh~Vt~~t~~ 40 (166)
..++++|.++|++|+++...
T Consensus 30 ~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 30 KIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred HHHHHHHHhCCCEEEEEECc
Confidence 57889999999999998743
No 230
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=58.39 E-value=32 Score=22.49 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=28.4
Q ss_pred cCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchh
Q 043556 10 PAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQ 44 (166)
Q Consensus 10 ~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~ 44 (166)
.+...|.-..+++..+.++++|..|..+|.....+
T Consensus 59 ~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~ 93 (131)
T PF01380_consen 59 IISYSGETRELIELLRFAKERGAPVILITSNSESP 93 (131)
T ss_dssp EEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSH
T ss_pred eeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCc
Confidence 33366899999999999999999998888765433
No 231
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=58.36 E-value=12 Score=31.44 Aligned_cols=33 Identities=27% Similarity=0.277 Sum_probs=23.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
||+++-.+-.| +.-|.+|+++||+||++=..+.
T Consensus 2 rVai~GaG~Ag-----L~~a~~La~~g~~vt~~ea~~~ 34 (485)
T COG3349 2 RVAIAGAGLAG-----LAAAYELADAGYDVTLYEARDR 34 (485)
T ss_pred eEEEEcccHHH-----HHHHHHHHhCCCceEEEeccCc
Confidence 45555444333 6778899999999999876543
No 232
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=57.77 E-value=21 Score=25.25 Aligned_cols=31 Identities=16% Similarity=-0.039 Sum_probs=21.7
Q ss_pred CCccEEEecCcc-ch-HHHHHHHhCCceEEEcc
Q 043556 106 EKIDCFIADAYM-GW-TMRIAEKMKLRRGVVWP 136 (166)
Q Consensus 106 ~~~d~iI~D~~~-~~-~~~vA~~l~iP~i~~~~ 136 (166)
.+||+||..... .. ....-++.|||++.+..
T Consensus 68 l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~ 100 (186)
T cd01141 68 LKPDLVILYGGFQAQTILDKLEQLGIPVLYVNE 100 (186)
T ss_pred cCCCEEEEecCCCchhHHHHHHHcCCCEEEeCC
Confidence 489999976533 22 44556789999988853
No 233
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.38 E-value=25 Score=29.12 Aligned_cols=36 Identities=22% Similarity=0.351 Sum_probs=28.7
Q ss_pred CCCEEEEEcCCCC--CChHHHHHHHHHHHHCCCEEEEEeCC
Q 043556 2 SNPHVLVIPAPAQ--GHVIPLLEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 2 ~~~~il~~~~p~~--GH~~P~l~la~~L~~rGh~Vt~~t~~ 40 (166)
.+++|++++.|+- |.-+- .|++|+..||.++++.+.
T Consensus 265 ~~P~V~Ilcgpgnnggdg~v---~gRHL~~~G~~~vi~~pk 302 (453)
T KOG2585|consen 265 QWPLVAILCGPGNNGGDGLV---CGRHLAQHGYTPVIYYPK 302 (453)
T ss_pred CCceEEEEeCCCCccchhHH---HHHHHHHcCceeEEEeec
Confidence 3577999999985 33322 999999999999998876
No 234
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=57.16 E-value=35 Score=26.47 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=31.0
Q ss_pred CCCCEEEEEcCCCCCC----hHHHHHHHHHHHHCCCEEEEEeCC
Q 043556 1 MSNPHVLVIPAPAQGH----VIPLLEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 1 ~~~~~il~~~~p~~GH----~~P~l~la~~L~~rGh~Vt~~t~~ 40 (166)
|++.||+++..+..+- +..--.+++.|.+.||+|.++...
T Consensus 1 ~~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~~ 44 (296)
T PRK14569 1 MKNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDAS 44 (296)
T ss_pred CCCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 8888999988755331 466778899999999999888543
No 235
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=57.02 E-value=96 Score=24.49 Aligned_cols=107 Identities=15% Similarity=0.096 Sum_probs=66.9
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHHCC--CEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCCCCCcCchhHHHH
Q 043556 4 PHVLVIPAPAQGHVIPLLEFSQCLANHG--VRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGMEPWEDRNELGNK 81 (166)
Q Consensus 4 ~~il~~~~p~~GH~~P~l~la~~L~~rG--h~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 81 (166)
++|+++-..+.|++.-...+.+.|+++. .++++++.....+-+..+ |.|.-+..-+.. . ..
T Consensus 2 ~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~--------p~I~~vi~~~~~--~---~~---- 64 (334)
T COG0859 2 MKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLN--------PEIDKVIIIDKK--K---KG---- 64 (334)
T ss_pred ceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcC--------hHhhhhcccccc--c---cc----
Confidence 6899999999999999999999999985 999999998876555432 344432221110 0 11
Q ss_pred HHHHHhhccHHHHHHHHHHhhcCCCCccEEEecCccchHHHHHHHhCCceEEEcc
Q 043556 82 LKKILQVMPGNLEELIEEINEKEDEKIDCFIADAYMGWTMRIAEKMKLRRGVVWP 136 (166)
Q Consensus 82 ~~~~~~~~~~~~~~ll~~l~~~~~~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~~ 136 (166)
..+ .....+.+.+.+ .++|+||-=.-..=...++...++|.-.-+-
T Consensus 65 -~~~-----~~~~~l~~~lr~---~~yD~vidl~~~~ksa~l~~~~~~~~r~g~~ 110 (334)
T COG0859 65 -LGL-----KERLALLRTLRK---ERYDAVIDLQGLLKSALLALLLGIPFRIGFD 110 (334)
T ss_pred -cch-----HHHHHHHHHhhc---cCCCEEEECcccHHHHHHHHHhCCCcccccc
Confidence 001 123344444442 5799887433333355566677777666544
No 236
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=56.94 E-value=12 Score=30.37 Aligned_cols=37 Identities=19% Similarity=0.201 Sum_probs=25.6
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCC
Q 043556 4 PHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 4 ~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~ 40 (166)
--+++++.+..|+-+-.-.+|.+||++|+-|..+=..
T Consensus 100 ~PvvIFSHGlgg~R~~yS~~~~eLAS~GyVV~aieHr 136 (379)
T PF03403_consen 100 FPVVIFSHGLGGSRTSYSAICGELASHGYVVAAIEHR 136 (379)
T ss_dssp EEEEEEE--TT--TTTTHHHHHHHHHTT-EEEEE---
T ss_pred CCEEEEeCCCCcchhhHHHHHHHHHhCCeEEEEeccC
Confidence 3578889999999999999999999999887776544
No 237
>KOG1509 consensus Predicted nucleic acid-binding protein ASMTL [Cell cycle control, cell division, chromosome partitioning]
Probab=56.91 E-value=40 Score=24.87 Aligned_cols=76 Identities=17% Similarity=0.250 Sum_probs=38.4
Q ss_pred HCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCCCCCcCchhHHHHHHHHHhhccHHHHHHHHHHhhcCCCCc
Q 043556 29 NHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGMEPWEDRNELGNKLKKILQVMPGNLEELIEEINEKEDEKI 108 (166)
Q Consensus 29 ~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 108 (166)
..|.++++.+.....+.+.+. -++++...+..+++.-...++....+.......+-..++++.+.+..+..+
T Consensus 7 ~~~~riiL~S~s~rrk~i~~~--------~G~~~~~~~S~feEnl~k~~~~~p~~yv~~tA~~KA~~I~erL~~~Ed~~~ 78 (209)
T KOG1509|consen 7 LKGKRIILASASPRRKQILAE--------MGLNLEVVVSTFEENLIKSSFETPEDYVVETAKQKAEEIIERLGDGEDSFP 78 (209)
T ss_pred hcCcEEEEecCCchHHHHHHH--------cCCceEEEeccchhhchhhccCCHHHHHHHHHHHHHHHHHHHhhccccCCc
Confidence 468888888877777777654 266776666555442111111111222222233345666666654322224
Q ss_pred cEEE
Q 043556 109 DCFI 112 (166)
Q Consensus 109 d~iI 112 (166)
|.+|
T Consensus 79 ~~vi 82 (209)
T KOG1509|consen 79 DVVI 82 (209)
T ss_pred cccc
Confidence 4444
No 238
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=56.85 E-value=26 Score=26.51 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=30.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCC
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~ 40 (166)
.|++.-=+|-|--.-...||..|+++|++|-++=.+
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 466776677788899999999999999999887444
No 239
>PRK06179 short chain dehydrogenase; Provisional
Probab=56.64 E-value=29 Score=26.00 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=26.2
Q ss_pred CCCCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCC
Q 043556 1 MSNPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 1 ~~~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~ 40 (166)
|...+.++++.++ |-+ =..++++|+++|++|+.+.-.
T Consensus 1 m~~~~~vlVtGas-g~i--G~~~a~~l~~~g~~V~~~~r~ 37 (270)
T PRK06179 1 MSNSKVALVTGAS-SGI--GRATAEKLARAGYRVFGTSRN 37 (270)
T ss_pred CCCCCEEEEecCC-CHH--HHHHHHHHHHCCCEEEEEeCC
Confidence 5444566666655 444 368899999999999887653
No 240
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=56.63 E-value=74 Score=23.06 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=31.0
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEe
Q 043556 4 PHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVN 38 (166)
Q Consensus 4 ~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t 38 (166)
.-|-+++..++|=..-.+.+|-+-+.+|.+|.++=
T Consensus 22 Gli~VYtGdGKGKTTAAlGlalRAaG~G~rV~iiQ 56 (178)
T PRK07414 22 GLVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQ 56 (178)
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEEE
Confidence 45788999999999999999999999999998864
No 241
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=56.58 E-value=14 Score=24.92 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHCCCEEEEEeC
Q 043556 19 PLLEFSQCLANHGVRVTFVNS 39 (166)
Q Consensus 19 P~l~la~~L~~rGh~Vt~~t~ 39 (166)
-.+.+|++|++||++|+..-.
T Consensus 24 ~~~~VA~~L~e~g~dv~atDI 44 (129)
T COG1255 24 FFLDVAKRLAERGFDVLATDI 44 (129)
T ss_pred hHHHHHHHHHHcCCcEEEEec
Confidence 368899999999999876543
No 242
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=56.24 E-value=25 Score=26.39 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=26.5
Q ss_pred CCCCh-HHHHHHHHHHHHC--CCEEEEEeCCcchhHH
Q 043556 13 AQGHV-IPLLEFSQCLANH--GVRVTFVNSEYNHQRV 46 (166)
Q Consensus 13 ~~GH~-~P~l~la~~L~~r--Gh~Vt~~t~~~~~~~~ 46 (166)
|.|+. .=..++.+.|.++ |++|.++.++...+.+
T Consensus 8 Gs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i 44 (234)
T TIGR02700 8 GAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVV 44 (234)
T ss_pred CccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHH
Confidence 33455 5789999999999 9999999998754443
No 243
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=56.10 E-value=21 Score=27.41 Aligned_cols=31 Identities=32% Similarity=0.399 Sum_probs=23.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCC
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~ 40 (166)
+|+++-.++.| ..+|..|+++||+|+++...
T Consensus 2 ~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIG-----GLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHH-----HHHHHHHHhCCCeEEEEECC
Confidence 56666665555 46788899999999999863
No 244
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=55.98 E-value=7.1 Score=35.24 Aligned_cols=75 Identities=16% Similarity=0.219 Sum_probs=45.7
Q ss_pred CCCeeeeecCCCCCCCcCchhHHHHHHHHHhhccHHHHHHHHHHhhcCCCCccEEEecCccchHHHHHHHhCCceEEEc
Q 043556 57 EEKIRLVSIPDGMEPWEDRNELGNKLKKILQVMPGNLEELIEEINEKEDEKIDCFIADAYMGWTMRIAEKMKLRRGVVW 135 (166)
Q Consensus 57 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~ 135 (166)
.|.++|-.+|.+-.+..-+.+..++.+.+.+.....+++-+++++. .|.|..|+|.... -.++...-|+..+++.
T Consensus 686 ~PpFRFGTVpngSTE~niR~Nyp~MHeYM~kyNq~~v~dal~sLK~---gKLDAFIyDaAVL-nY~agkDegCKLvTIG 760 (1258)
T KOG1053|consen 686 YPPFRFGTVPNGSTERNIRSNYPEMHEYMVKYNQPGVEDALESLKN---GKLDAFIYDAAVL-NYMAGKDEGCKLVTIG 760 (1258)
T ss_pred CCCcccccCCCCchhhhHHhccHHHHHHHHHhccCchHHHHHHHhc---ccchhHHHHHHHH-HHhhccCCCceEEEec
Confidence 3456666655443222223444555666666667778999999885 6899999997542 1234444566655554
No 245
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=55.84 E-value=31 Score=26.79 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=31.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
+|++.-=+|.|=-.....||..|+++|.+|.++=.++
T Consensus 2 ~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~Dp 38 (290)
T CHL00072 2 KLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDP 38 (290)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccC
Confidence 5788888888888999999999999999998875543
No 246
>PRK06849 hypothetical protein; Provisional
Probab=55.63 E-value=31 Score=27.77 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=26.3
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
.++|++.- .. ..-.+++++.|.++||+|.++.....
T Consensus 4 ~~~VLI~G-~~---~~~~l~iar~l~~~G~~Vi~~d~~~~ 39 (389)
T PRK06849 4 KKTVLITG-AR---APAALELARLFHNAGHTVILADSLKY 39 (389)
T ss_pred CCEEEEeC-CC---cHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 45666653 22 23578999999999999999877653
No 247
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=55.55 E-value=41 Score=22.27 Aligned_cols=37 Identities=14% Similarity=0.191 Sum_probs=32.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
||++..-++.|=-.....+++.|+++|.+|.++-...
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4778888899999999999999999999999888775
No 248
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=55.55 E-value=24 Score=28.95 Aligned_cols=28 Identities=7% Similarity=0.183 Sum_probs=22.1
Q ss_pred CCccEEEecCccchHHHHHHHhCCceEEEcc
Q 043556 106 EKIDCFIADAYMGWTMRIAEKMKLRRGVVWP 136 (166)
Q Consensus 106 ~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~~ 136 (166)
.+||++|.+. ....+|+++|+|.+.+..
T Consensus 369 ~~pdliig~~---~~~~~a~~~gip~~~~~~ 396 (430)
T cd01981 369 TEPELIFGTQ---MERHIGKRLDIPCAVISA 396 (430)
T ss_pred hCCCEEEecc---hhhHHHHHcCCCEEEEeC
Confidence 4789999887 356678999999987644
No 249
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=55.39 E-value=1.5e+02 Score=26.31 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=30.4
Q ss_pred CEEEEEcC--CCCCChHHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 4 PHVLVIPA--PAQGHVIPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 4 ~~il~~~~--p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
.+++.++. ++.|--.-...||..|+..|.+|-++=.+..
T Consensus 546 ~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~ 586 (754)
T TIGR01005 546 PEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGR 586 (754)
T ss_pred ceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 46666655 4568889999999999999999888866544
No 250
>PRK13604 luxD acyl transferase; Provisional
Probab=54.88 E-value=36 Score=26.90 Aligned_cols=33 Identities=12% Similarity=0.211 Sum_probs=26.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEE
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFV 37 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~ 37 (166)
..+++..+..++-.-+..+|+.|+++|+.|.-+
T Consensus 38 ~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrf 70 (307)
T PRK13604 38 NTILIASGFARRMDHFAGLAEYLSSNGFHVIRY 70 (307)
T ss_pred CEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEe
Confidence 566677777777777999999999999987754
No 251
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=54.84 E-value=8.3 Score=28.57 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=31.5
Q ss_pred CCccEEE-ecCcc-chHHHHHHHhCCceEEEccccHHHHHHHhccc
Q 043556 106 EKIDCFI-ADAYM-GWTMRIAEKMKLRRGVVWPSSAASVALCFRIP 149 (166)
Q Consensus 106 ~~~d~iI-~D~~~-~~~~~vA~~l~iP~i~~~~~~~~~~~~~~~~~ 149 (166)
..||+|| .|+-. ..+..-|.++|||.+.+.-+....-.+.+.+|
T Consensus 142 ~~P~~vii~~~~~~~~~i~Ea~~l~IP~i~i~Dtn~~~~~i~ypIp 187 (211)
T PF00318_consen 142 KLPDLVIILDPNKNKNAIREANKLNIPTIAIVDTNCNPSLIDYPIP 187 (211)
T ss_dssp SSBSEEEESSTTTTHHHHHHHHHTTS-EEEEESTTS-GTTSSEEEE
T ss_pred ccCcEEEEecccccchhHHHHHhcCceEEEeecCCCCccccceEee
Confidence 3588766 77755 45788899999999999887776655556655
No 252
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=54.46 E-value=1.2e+02 Score=24.82 Aligned_cols=57 Identities=18% Similarity=0.309 Sum_probs=44.9
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcch--hHHHhhhccCCCCCCCeeeeecCC
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNH--QRVLKSLEGKNNLEEKIRLVSIPD 67 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~--~~~~~~~~~~~~~~~~i~~~~l~~ 67 (166)
+.|+.++-.+-.||---|--=|.-|++.|++|+++...... +.+.. .|+|+++.++.
T Consensus 12 k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~--------hprI~ih~m~~ 70 (444)
T KOG2941|consen 12 KKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLN--------HPRIRIHGMPN 70 (444)
T ss_pred cceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhc--------CCceEEEeCCC
Confidence 57888888888999888888899999999999999876542 22222 37999988863
No 253
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=54.32 E-value=32 Score=26.05 Aligned_cols=35 Identities=20% Similarity=0.171 Sum_probs=27.6
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeC
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNS 39 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~ 39 (166)
.|++.-=+|-|=-.-...||..|+++|++|-++=-
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~ 36 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGC 36 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEec
Confidence 46666555566669999999999999999988733
No 254
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=54.24 E-value=14 Score=29.11 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeC
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNS 39 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~ 39 (166)
+.++++.++.|= =-..+++||+||.+|.+++=
T Consensus 50 ~WAVVTGaTDGI---GKayA~eLAkrG~nvvLIsR 81 (312)
T KOG1014|consen 50 SWAVVTGATDGI---GKAYARELAKRGFNVVLISR 81 (312)
T ss_pred CEEEEECCCCcc---hHHHHHHHHHcCCEEEEEeC
Confidence 345555555431 14689999999999888763
No 255
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=54.07 E-value=28 Score=26.70 Aligned_cols=31 Identities=6% Similarity=-0.045 Sum_probs=24.1
Q ss_pred CccEEEecCcc------chHHHHHHHhCCceEEEccc
Q 043556 107 KIDCFIADAYM------GWTMRIAEKMKLRRGVVWPS 137 (166)
Q Consensus 107 ~~d~iI~D~~~------~~~~~vA~~l~iP~i~~~~~ 137 (166)
.||+|++.--. ..+..+|+.||+|++++...
T Consensus 112 ~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 112 GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 59999976433 24678999999999987664
No 256
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=54.05 E-value=17 Score=28.99 Aligned_cols=40 Identities=18% Similarity=0.180 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhcCCCCccEEE--ecCccc-hHHHHHHHhCCceEEEccc
Q 043556 92 NLEELIEEINEKEDEKIDCFI--ADAYMG-WTMRIAEKMKLRRGVVWPS 137 (166)
Q Consensus 92 ~~~~ll~~l~~~~~~~~d~iI--~D~~~~-~~~~vA~~l~iP~i~~~~~ 137 (166)
.+.+++++ .+||+|| .|-+.. .+..+|..++||++-+-..
T Consensus 58 ~~~~~~~~------~~Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaG 100 (346)
T PF02350_consen 58 ELADVLER------EKPDAVLVLGDRNEALAAALAAFYLNIPVAHIEAG 100 (346)
T ss_dssp HHHHHHHH------HT-SEEEEETTSHHHHHHHHHHHHTT-EEEEES--
T ss_pred HHHHHHHh------cCCCEEEEEcCCchHHHHHHHHHHhCCCEEEecCC
Confidence 45555655 4678766 676654 5688999999999887766
No 257
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.00 E-value=28 Score=28.55 Aligned_cols=34 Identities=24% Similarity=0.405 Sum_probs=24.4
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
..+++++ |-|. .-+ .+|+.|+++|++|+++....
T Consensus 5 ~k~v~ii---G~g~-~G~-~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVV---GAGV-SGL-ALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEE---CCCH-HHH-HHHHHHHHCCCEEEEEeCCc
Confidence 3455555 3344 444 99999999999999987653
No 258
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=53.72 E-value=44 Score=22.24 Aligned_cols=39 Identities=8% Similarity=0.017 Sum_probs=30.3
Q ss_pred CCEEEEEcCCCCCChHHHH---HHHHHHHHCCCEEEEEeCCc
Q 043556 3 NPHVLVIPAPAQGHVIPLL---EFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l---~la~~L~~rGh~Vt~~t~~~ 41 (166)
.+++++++....|-...++ .|.+.-+++||++++=+-..
T Consensus 2 ~mkivaVtacp~GiAht~lAAeaL~kAA~~~G~~i~VE~qg~ 43 (114)
T PRK10427 2 MAYLVAVTACVSGVAHTYMAAERLEKLCQLEKWGVKIETQGA 43 (114)
T ss_pred CceEEEEeeCCCcHHHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 3688999888888887776 56677778999999866443
No 259
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=53.56 E-value=47 Score=19.91 Aligned_cols=33 Identities=21% Similarity=0.366 Sum_probs=26.9
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEe
Q 043556 6 VLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVN 38 (166)
Q Consensus 6 il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t 38 (166)
+++...++.|=-.-...+++.|+++|++|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 345555677888889999999999999998766
No 260
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=53.51 E-value=23 Score=27.26 Aligned_cols=31 Identities=32% Similarity=0.371 Sum_probs=24.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCC
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~ 40 (166)
||+++-.++.| ..+|..|+++||+|+++..+
T Consensus 2 kI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r~ 32 (305)
T PRK12921 2 RIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVRP 32 (305)
T ss_pred eEEEECCCHHH-----HHHHHHHHHCCCceEEEecH
Confidence 67777666555 35788899999999999873
No 261
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=53.49 E-value=15 Score=28.33 Aligned_cols=35 Identities=20% Similarity=0.291 Sum_probs=26.2
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCC
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~ 40 (166)
+.+-++++.++.| ==.++++.|++||++|.++.=.
T Consensus 5 ~~~~~lITGASsG---IG~~~A~~lA~~g~~liLvaR~ 39 (265)
T COG0300 5 KGKTALITGASSG---IGAELAKQLARRGYNLILVARR 39 (265)
T ss_pred CCcEEEEECCCch---HHHHHHHHHHHCCCEEEEEeCc
Confidence 4456677777655 2368999999999999998754
No 262
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=53.02 E-value=16 Score=24.63 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHCCCEEEEEeCCcchhHH
Q 043556 17 VIPLLEFSQCLANHGVRVTFVNSEYNHQRV 46 (166)
Q Consensus 17 ~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~ 46 (166)
+.|++++.-.+.-|||++|++-|..+...+
T Consensus 9 Vk~L~eIll~FilrGHKT~vyLP~yY~~~~ 38 (122)
T PF14626_consen 9 VKALVEILLHFILRGHKTVVYLPKYYKNYV 38 (122)
T ss_pred HHHHHHHHHHHHhccCeeEEEChHHHhccc
Confidence 357888888899999999999988765543
No 263
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=52.65 E-value=20 Score=28.41 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=27.8
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
+.+|+++=.+-.| +..|..|+++|++|+++-...
T Consensus 4 ~~~vvVIGgGi~G-----ls~A~~La~~G~~V~vie~~~ 37 (387)
T COG0665 4 KMDVVIIGGGIVG-----LSAAYYLAERGADVTVLEAGE 37 (387)
T ss_pred cceEEEECCcHHH-----HHHHHHHHHcCCEEEEEecCc
Confidence 5788888766666 889999999999999987554
No 264
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=52.61 E-value=51 Score=23.09 Aligned_cols=41 Identities=15% Similarity=0.128 Sum_probs=24.3
Q ss_pred HHHHHHHHHhhcCCCCccEEEecCcc-chH-HH-H-HHH-h-CCceEEEcccc
Q 043556 92 NLEELIEEINEKEDEKIDCFIADAYM-GWT-MR-I-AEK-M-KLRRGVVWPSS 138 (166)
Q Consensus 92 ~~~~ll~~l~~~~~~~~d~iI~D~~~-~~~-~~-v-A~~-l-~iP~i~~~~~~ 138 (166)
.+.+++++ .+||+||+-..+ ..+ .. + .+. + ++|.+++.|=.
T Consensus 80 ~l~~~l~~------~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD~ 126 (169)
T PF06925_consen 80 RLIRLLRE------FQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTDF 126 (169)
T ss_pred HHHHHHhh------cCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcCC
Confidence 45555554 689999987644 323 22 2 222 4 58888777654
No 265
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=52.56 E-value=30 Score=24.94 Aligned_cols=42 Identities=21% Similarity=0.181 Sum_probs=26.1
Q ss_pred HHHHHHHHhhcCCCCccEEEecCccch--HHHHHHHhCCceEEEccccH
Q 043556 93 LEELIEEINEKEDEKIDCFIADAYMGW--TMRIAEKMKLRRGVVWPSSA 139 (166)
Q Consensus 93 ~~~ll~~l~~~~~~~~d~iI~D~~~~~--~~~vA~~l~iP~i~~~~~~~ 139 (166)
++.+++.. .++.-+|.|+|+.. ...+|.++|-.+|.+=..+-
T Consensus 181 ~~~lI~~~-----t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~ 224 (231)
T PF01555_consen 181 IERLIKAS-----TNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEE 224 (231)
T ss_dssp HHHHHHHH-----S-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHH
T ss_pred HHHHHHhh-----hccceeeehhhhccChHHHHHHHcCCeEEEEeCCHH
Confidence 45555443 34567889999854 46789999999988755443
No 266
>PF08026 Antimicrobial_5: Bee antimicrobial peptide; InterPro: IPR012524 This entry represents antimicrobial peptides produced by bees. These peptides have strong antimicrobial and some anti-fungal activity and has homology to abaecin which is the largest proline-rich antimicrobial peptide isolated from European bumblebee Bombus pascuorum [].; GO: 0042381 hemolymph coagulation, 0005576 extracellular region
Probab=52.51 E-value=1.7 Score=22.46 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=17.3
Q ss_pred EEcCCCCCChHHHHHHHHHHHHCCC
Q 043556 8 VIPAPAQGHVIPLLEFSQCLANHGV 32 (166)
Q Consensus 8 ~~~~p~~GH~~P~l~la~~L~~rGh 32 (166)
|-++|++|-+||-+++---|-+.||
T Consensus 15 FPTFPGqGP~NPKir~Pyplpn~g~ 39 (39)
T PF08026_consen 15 FPTFPGQGPFNPKIRWPYPLPNPGH 39 (39)
T ss_pred CCcCCCCCCCCccccccccCCCCCC
Confidence 3478899999988776555555543
No 267
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=52.38 E-value=18 Score=25.28 Aligned_cols=22 Identities=18% Similarity=0.149 Sum_probs=18.5
Q ss_pred HHHHHHHHHCCCEEEEEeCCcc
Q 043556 21 LEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 21 l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
..++++|.++||+|+.++-...
T Consensus 12 ~~l~~~L~~~~~~V~~~~R~~~ 33 (183)
T PF13460_consen 12 RALAKQLLRRGHEVTALVRSPS 33 (183)
T ss_dssp HHHHHHHHHTTSEEEEEESSGG
T ss_pred HHHHHHHHHCCCEEEEEecCch
Confidence 3589999999999999986644
No 268
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=52.09 E-value=40 Score=24.28 Aligned_cols=30 Identities=17% Similarity=0.129 Sum_probs=23.7
Q ss_pred CCccEEE-ecC-ccchHHHHHHHhCCceEEEc
Q 043556 106 EKIDCFI-ADA-YMGWTMRIAEKMKLRRGVVW 135 (166)
Q Consensus 106 ~~~d~iI-~D~-~~~~~~~vA~~l~iP~i~~~ 135 (166)
.++|.|+ .+. ....+..+|.++|+|++..-
T Consensus 52 ~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~vR 83 (179)
T COG0503 52 DGIDKIVTIEARGIPLAAAVALELGVPFVPVR 83 (179)
T ss_pred cCCCEEEEEccccchhHHHHHHHhCCCEEEEE
Confidence 5699999 444 44568999999999999854
No 269
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=51.99 E-value=83 Score=22.29 Aligned_cols=100 Identities=13% Similarity=0.122 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHCCCEEEEEeCCcc-hhHHHhhhccCCCCCCCeeeeecCCCCCCCcCchhHHHHHHHHHhhccHHHHHH
Q 043556 18 IPLLEFSQCLANHGVRVTFVNSEYN-HQRVLKSLEGKNNLEEKIRLVSIPDGMEPWEDRNELGNKLKKILQVMPGNLEEL 96 (166)
Q Consensus 18 ~P~l~la~~L~~rGh~Vt~~t~~~~-~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 96 (166)
.-+..+.+...++|.+|.++.+... .+.+.+.+. ...|++.+....++.- .....+++
T Consensus 35 dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~---~~yP~l~ivg~~~g~f------------------~~~~~~~i 93 (172)
T PF03808_consen 35 DLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLR---RRYPGLRIVGYHHGYF------------------DEEEEEAI 93 (172)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHH---HHCCCeEEEEecCCCC------------------ChhhHHHH
Confidence 3456677777788999999987653 232222211 1235777765443321 01123444
Q ss_pred HHHHhhcCCCCccEEEecCccc----hHHHHHHHhCCceEEEccccHHH
Q 043556 97 IEEINEKEDEKIDCFIADAYMG----WTMRIAEKMKLRRGVVWPSSAAS 141 (166)
Q Consensus 97 l~~l~~~~~~~~d~iI~D~~~~----~~~~vA~~l~iP~i~~~~~~~~~ 141 (166)
++.+.+ .++|+|+.....+ |+....++++.+++.-.......
T Consensus 94 ~~~I~~---~~pdiv~vglG~PkQE~~~~~~~~~l~~~v~i~vG~~~d~ 139 (172)
T PF03808_consen 94 INRINA---SGPDIVFVGLGAPKQERWIARHRQRLPAGVIIGVGGAFDF 139 (172)
T ss_pred HHHHHH---cCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECchhhh
Confidence 555543 5789999988775 66777888888844333333333
No 270
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=51.98 E-value=43 Score=25.19 Aligned_cols=36 Identities=14% Similarity=0.159 Sum_probs=27.3
Q ss_pred CCccEEEecCccchHHHHH-HHhCCceEEEccccHHH
Q 043556 106 EKIDCFIADAYMGWTMRIA-EKMKLRRGVVWPSSAAS 141 (166)
Q Consensus 106 ~~~d~iI~D~~~~~~~~vA-~~l~iP~i~~~~~~~~~ 141 (166)
.++|.+|.-+|...+...+ +..++|++.+.-++...
T Consensus 68 ~GvdaiiIaCf~DPgl~~~Re~~~~PviGi~eAsv~~ 104 (230)
T COG4126 68 QGVDAIIIACFSDPGLAAARERAAIPVIGICEASVLA 104 (230)
T ss_pred cCCcEEEEEecCChHHHHHHHHhCCCceehhHHHHHH
Confidence 5799999999987766655 45899999877655543
No 271
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=51.96 E-value=46 Score=24.54 Aligned_cols=48 Identities=23% Similarity=0.281 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhcC-CCCccEEEecCccchHHHHHHHhCCceEEEccccH
Q 043556 92 NLEELIEEINEKE-DEKIDCFIADAYMGWTMRIAEKMKLRRGVVWPSSA 139 (166)
Q Consensus 92 ~~~~ll~~l~~~~-~~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~~~~~ 139 (166)
.++.+++...... +..+.+||+|----.+..-|++.|||...+..-..
T Consensus 13 Nlqaiida~~~~~~~a~i~~Visd~~~A~~lerA~~~gIpt~~~~~k~~ 61 (200)
T COG0299 13 NLQAIIDAIKGGKLDAEIVAVISDKADAYALERAAKAGIPTVVLDRKEF 61 (200)
T ss_pred cHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHcCCCEEEeccccC
Confidence 3566666654210 13578999998777799999999999988765544
No 272
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=51.50 E-value=60 Score=23.10 Aligned_cols=26 Identities=8% Similarity=0.133 Sum_probs=19.6
Q ss_pred CCCChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 13 AQGHVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 13 ~~GH~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
+-|++. +|+.+|.++|.+|.+++.+.
T Consensus 114 gD~DF~---~Lv~~lre~G~~V~v~g~~~ 139 (160)
T TIGR00288 114 RDADFL---PVINKAKENGKETIVIGAEP 139 (160)
T ss_pred ccHhHH---HHHHHHHHCCCEEEEEeCCC
Confidence 345555 46778889999999999665
No 273
>PHA03366 FGAM-synthase; Provisional
Probab=51.35 E-value=1.6e+02 Score=28.41 Aligned_cols=106 Identities=11% Similarity=0.026 Sum_probs=60.6
Q ss_pred CCCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCCCCCcCchhHHHH
Q 043556 2 SNPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGMEPWEDRNELGNK 81 (166)
Q Consensus 2 ~~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 81 (166)
+++||+++-+||. |-=.+.+.++.+.|+++..+...+....-. + ..+....++.++..++....-..+
T Consensus 1027 ~~prVaIl~~pG~---N~~~e~~~Af~~aGf~~~~v~~~dL~~~~~--l-------~~f~glv~~GGFS~gD~l~~~~~~ 1094 (1304)
T PHA03366 1027 KRHRVAVLLLPGC---PGPHALLAAFTNAGFDPYPVSIEELKDGTF--L-------DEFSGLVIGGSSGAEDSYTGARAA 1094 (1304)
T ss_pred CCCeEEEEECCCC---CCHHHHHHHHHHcCCceEEEEeecCCCCCc--c-------ccceEEEEcCCCCCcccccHHHHH
Confidence 3689999999985 334578888889999988877654321110 1 367777788877654322222222
Q ss_pred HHHHHhhccHHHHHHHHHHhhcCCCCccEEEecCccchHHHHHH
Q 043556 82 LKKILQVMPGNLEELIEEINEKEDEKIDCFIADAYMGWTMRIAE 125 (166)
Q Consensus 82 ~~~~~~~~~~~~~~ll~~l~~~~~~~~d~iI~D~~~~~~~~vA~ 125 (166)
...+. .++.+++-++++. .+.|-.+...+...++.+++
T Consensus 1095 a~~il--~n~~~~~~~~~f~----~r~dt~~LGiCN~G~Q~L~~ 1132 (1304)
T PHA03366 1095 VAALL--SNPAVRDALLRFL----NRPDTFSLGCGELGCQILFA 1132 (1304)
T ss_pred HHHhh--hchHHHHHHHHHH----hCCCCeEEEeCcHHHHHHHH
Confidence 22222 1223434444433 24577777777644444444
No 274
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=51.30 E-value=44 Score=25.94 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=30.3
Q ss_pred CCCCEEE-EEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 1 MSNPHVL-VIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 1 ~~~~~il-~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
|+++++. |..=+|-|=-.-...||..|+++|.+|-++=.+.
T Consensus 1 ~~~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~ 42 (295)
T PRK13234 1 MSKLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDP 42 (295)
T ss_pred CCcceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 6665544 4444555667889999999999999999985443
No 275
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=51.30 E-value=79 Score=21.85 Aligned_cols=99 Identities=12% Similarity=0.120 Sum_probs=59.4
Q ss_pred CCCChHHHHHHHHHHHHC--CCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCCCCCcCchhHHHHHHHHHhhcc
Q 043556 13 AQGHVIPLLEFSQCLANH--GVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGMEPWEDRNELGNKLKKILQVMP 90 (166)
Q Consensus 13 ~~GH~~P~l~la~~L~~r--Gh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (166)
.-++-.-++++++.|.+. |+++ +++....+.++.. .|+.+..+-.+ +.+ ..
T Consensus 12 ~d~dK~~l~~~a~~l~~ll~Gf~l--~AT~gTa~~L~~~--------~Gi~v~~vi~~-~~g----------------g~ 64 (142)
T PRK05234 12 HDHKKDDLVAWVKAHKDLLEQHEL--YATGTTGGLIQEA--------TGLDVTRLLSG-PLG----------------GD 64 (142)
T ss_pred eccchHHHHHHHHHHHHHhcCCEE--EEeChHHHHHHhc--------cCCeeEEEEcC-CCC----------------Cc
Confidence 345667899999999999 9994 5666666666542 25655444111 110 11
Q ss_pred HHHHHHHHHHhhcCCCCccEEEe--cCccc--------hHHHHHHHhCCceEEEccccHHHHHH
Q 043556 91 GNLEELIEEINEKEDEKIDCFIA--DAYMG--------WTMRIAEKMKLRRGVVWPSSAASVAL 144 (166)
Q Consensus 91 ~~~~~ll~~l~~~~~~~~d~iI~--D~~~~--------~~~~vA~~l~iP~i~~~~~~~~~~~~ 144 (166)
+.+.++++. .++|+||. |.... .....|-++|||+++-..+..+..-.
T Consensus 65 ~~i~~~I~~------g~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~l~tA~a~~~a 122 (142)
T PRK05234 65 QQIGALIAE------GKIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVATNRATADFLISS 122 (142)
T ss_pred hhHHHHHHc------CceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEcCHHHHHHHHHH
Confidence 123334432 57899986 53221 23456999999999866555544433
No 276
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=51.27 E-value=95 Score=22.72 Aligned_cols=43 Identities=21% Similarity=0.308 Sum_probs=33.7
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHh
Q 043556 6 VLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLK 48 (166)
Q Consensus 6 il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~ 48 (166)
+++.-.|+.|=-.-.++++..-+++|..|.+++.+.....+..
T Consensus 19 ~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~ 61 (224)
T TIGR03880 19 IVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILG 61 (224)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHH
Confidence 4555667788888888999888888999999999876655543
No 277
>PRK06180 short chain dehydrogenase; Provisional
Probab=50.83 E-value=45 Score=25.19 Aligned_cols=37 Identities=19% Similarity=0.103 Sum_probs=25.2
Q ss_pred CCCCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCC
Q 043556 1 MSNPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 1 ~~~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~ 40 (166)
|...+.++++.++ |.+ =..+++.|+++|++|..+.-.
T Consensus 1 ~~~~~~vlVtGas-ggi--G~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 1 MSSMKTWLITGVS-SGF--GRALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred CCCCCEEEEecCC-ChH--HHHHHHHHHhCcCEEEEEeCC
Confidence 3334555566554 433 567889999999999887653
No 278
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=50.80 E-value=59 Score=27.67 Aligned_cols=38 Identities=16% Similarity=0.365 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecC
Q 043556 18 IPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIP 66 (166)
Q Consensus 18 ~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 66 (166)
.=++++++.|.+.|+++ +++....+.+... |+.+..+.
T Consensus 15 ~~iv~lAk~L~~lGfeI--~AT~GTak~L~e~---------GI~v~~V~ 52 (513)
T PRK00881 15 TGIVEFAKALVELGVEI--LSTGGTAKLLAEA---------GIPVTEVS 52 (513)
T ss_pred ccHHHHHHHHHHCCCEE--EEcchHHHHHHHC---------CCeeEEee
Confidence 44789999999999886 5677777777654 67766554
No 279
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=50.76 E-value=96 Score=22.63 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=24.5
Q ss_pred cCCCCCChHHHHHHHHHHHHCCCEEEEEe
Q 043556 10 PAPAQGHVIPLLEFSQCLANHGVRVTFVN 38 (166)
Q Consensus 10 ~~p~~GH~~P~l~la~~L~~rGh~Vt~~t 38 (166)
+.++.|--.-.+.|++.|+++|.+|-++=
T Consensus 7 t~t~~GKT~vs~~L~~~l~~~g~~v~~~K 35 (222)
T PRK00090 7 TDTDVGKTVVTAALAQALREAGYSVAGYK 35 (222)
T ss_pred CCCCcCHHHHHHHHHHHHHHcCCceEEEe
Confidence 44556889999999999999999997754
No 280
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=50.58 E-value=34 Score=28.03 Aligned_cols=28 Identities=11% Similarity=-0.111 Sum_probs=22.9
Q ss_pred CCccEEEecCccchHHHHHHHhCCceEEEcc
Q 043556 106 EKIDCFIADAYMGWTMRIAEKMKLRRGVVWP 136 (166)
Q Consensus 106 ~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~~ 136 (166)
.++|++|.. +-+..+|+++|||.+.+..
T Consensus 349 ~~pDl~Ig~---s~~~~~a~~~giP~~r~~~ 376 (416)
T cd01980 349 YRPDLAIGT---TPLVQYAKEKGIPALYYTN 376 (416)
T ss_pred cCCCEEEeC---ChhhHHHHHhCCCEEEecC
Confidence 589999976 4578899999999987553
No 281
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=50.56 E-value=35 Score=27.92 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=29.6
Q ss_pred CEEEEEcC--CCCCChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 4 PHVLVIPA--PAQGHVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 4 ~~il~~~~--p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
++|..+.. +|.|=-...+.||..|+.+|++|-++=.+.
T Consensus 121 ~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDp 160 (405)
T PRK13869 121 LQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDP 160 (405)
T ss_pred ceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCC
Confidence 35544443 677888999999999999999998875544
No 282
>PRK14098 glycogen synthase; Provisional
Probab=50.54 E-value=16 Score=30.67 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=28.8
Q ss_pred CEEEEEcCCCC------CChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 4 PHVLVIPAPAQ------GHVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 4 ~~il~~~~p~~------GH~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
+||++++.-.. |=-.-+-.|.++|+++||+|.++.|..
T Consensus 6 ~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 6 FKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred cEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 68888765331 223566789999999999999999964
No 283
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=50.52 E-value=39 Score=20.82 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=26.5
Q ss_pred EEEEEcCCCC--CChHHHHHHHHHHHHCCCEEEEEe
Q 043556 5 HVLVIPAPAQ--GHVIPLLEFSQCLANHGVRVTFVN 38 (166)
Q Consensus 5 ~il~~~~p~~--GH~~P~l~la~~L~~rGh~Vt~~t 38 (166)
+++++|.... .+..-...++..|.+.|.+|.+-.
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~ 38 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDD 38 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 5778887653 456678889999999999998854
No 284
>PRK13236 nitrogenase reductase; Reviewed
Probab=50.28 E-value=28 Score=27.04 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=23.0
Q ss_pred CCCChHHHHHHHHHHHHCCCEEEEEeCC
Q 043556 13 AQGHVIPLLEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 13 ~~GH~~P~l~la~~L~~rGh~Vt~~t~~ 40 (166)
|-|=-+....||..|+++|.+|-++=.+
T Consensus 16 GVGKTt~a~NLA~~La~~G~rVLliD~D 43 (296)
T PRK13236 16 GIGKSTTSQNTLAAMAEMGQRILIVGCD 43 (296)
T ss_pred cCCHHHHHHHHHHHHHHCCCcEEEEEcc
Confidence 3455588999999999999999998544
No 285
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=50.07 E-value=59 Score=25.06 Aligned_cols=38 Identities=13% Similarity=0.245 Sum_probs=32.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
-++++..+|.|=-.-...||..|+++|.+|.++..+.+
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 46677777789999999999999999999999998754
No 286
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=50.02 E-value=16 Score=28.27 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=20.8
Q ss_pred CChHHHHHHHHHHHHCCCEEEEEeC
Q 043556 15 GHVIPLLEFSQCLANHGVRVTFVNS 39 (166)
Q Consensus 15 GH~~P~l~la~~L~~rGh~Vt~~t~ 39 (166)
||+.| +...+.|++.||++.++..
T Consensus 16 Gh~~~-l~~~~~lq~~g~~~~~~I~ 39 (273)
T cd00395 16 GHLIG-LLTFRRFQHAGHRPIFLIG 39 (273)
T ss_pred HHHHH-HHHHHHHHHCCCCEEEEEe
Confidence 99999 7788899999999988665
No 287
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=50.01 E-value=1.1e+02 Score=28.65 Aligned_cols=85 Identities=14% Similarity=0.080 Sum_probs=54.2
Q ss_pred ChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCCCCCcCchhHHHHHHHHHhhccHHHHH
Q 043556 16 HVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGMEPWEDRNELGNKLKKILQVMPGNLEE 95 (166)
Q Consensus 16 H~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (166)
+-.=++++++.|.+.|++ +++++...+.+... ++.+..+.... + ..+.+.+
T Consensus 948 dK~~l~~~a~~l~~~G~~--i~aT~gT~~~l~~~---------gi~~~~v~~~~-~-----------------~~~~i~~ 998 (1066)
T PRK05294 948 DKEEVVELAKRLLELGFK--ILATSGTAKFLREA---------GIPVELVNKVH-E-----------------GRPHIVD 998 (1066)
T ss_pred cHHHHHHHHHHHHHcCCE--EEEccHHHHHHHHC---------CCeeEEEeecc-C-----------------cCccHHH
Confidence 556678889999998877 56777766666543 66655442110 0 1123455
Q ss_pred HHHHHhhcCCCCccEEEecCcc-------chHHHHHHHhCCceEEEc
Q 043556 96 LIEEINEKEDEKIDCFIADAYM-------GWTMRIAEKMKLRRGVVW 135 (166)
Q Consensus 96 ll~~l~~~~~~~~d~iI~D~~~-------~~~~~vA~~l~iP~i~~~ 135 (166)
++++ .++|+||.-.-. ......|-++|||+++-.
T Consensus 999 ~i~~------~~idlvIn~~~~~~~~~~g~~iRr~Av~~~ip~~T~~ 1039 (1066)
T PRK05294 999 LIKN------GEIDLVINTPTGRQAIRDGFSIRRAALEYKVPYITTL 1039 (1066)
T ss_pred HHHc------CCeEEEEECCCCcccccccHHHHHHHHHcCCCEEecH
Confidence 5543 689999975422 235678999999999643
No 288
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=49.96 E-value=54 Score=21.40 Aligned_cols=38 Identities=11% Similarity=0.128 Sum_probs=29.5
Q ss_pred CCCCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEe
Q 043556 1 MSNPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVN 38 (166)
Q Consensus 1 ~~~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t 38 (166)
|++.+|++++..|.|--.-+-.+-.....+|.++.+-.
T Consensus 1 m~~kkIllvC~~G~sTSll~~km~~~~~~~gi~~~V~A 38 (106)
T PRK10499 1 MEKKHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEA 38 (106)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHHHHHCCCCEEEEE
Confidence 66678999999998876655567777778898887744
No 289
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=49.91 E-value=24 Score=27.21 Aligned_cols=36 Identities=28% Similarity=0.208 Sum_probs=27.3
Q ss_pred CCCCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 1 MSNPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 1 ~~~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
|...+|.++-.+..| ..+|..|+++||+|+++....
T Consensus 1 ~~~~kIaViGaG~mG-----~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 1 MDIKNVTVAGAGVLG-----SQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred CCccEEEEECCCHHH-----HHHHHHHHhcCCeEEEEeCCH
Confidence 444678888666656 457888999999999987653
No 290
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=49.71 E-value=33 Score=29.10 Aligned_cols=27 Identities=11% Similarity=0.236 Sum_probs=22.1
Q ss_pred CCccEEEecCccchHHHHHHHhCCceEEEc
Q 043556 106 EKIDCFIADAYMGWTMRIAEKMKLRRGVVW 135 (166)
Q Consensus 106 ~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~ 135 (166)
.+||+||.+. +...+|+++|||.+.+.
T Consensus 373 ~~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 373 VEPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred cCCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 4799999887 46667999999998755
No 291
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=49.67 E-value=30 Score=28.52 Aligned_cols=27 Identities=11% Similarity=-0.101 Sum_probs=22.4
Q ss_pred CCccEEEecCccchHHHHHHHhCCceEEEc
Q 043556 106 EKIDCFIADAYMGWTMRIAEKMKLRRGVVW 135 (166)
Q Consensus 106 ~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~ 135 (166)
.++|++|.. +-...+|+++|||.+.+.
T Consensus 354 ~~pDllig~---s~~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 354 FEPDLAIGT---TPLVQFAKEHGIPALYFT 380 (422)
T ss_pred CCCCEEEcC---CcchHHHHHcCCCEEEec
Confidence 589999977 346778999999999854
No 292
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=49.65 E-value=37 Score=25.29 Aligned_cols=39 Identities=23% Similarity=0.323 Sum_probs=30.4
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
+.+|.+-..||.|-..-|++=|++|.++|.+|.+-.-+.
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~vet 43 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVET 43 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecC
Confidence 468889999999999999999999999999998755443
No 293
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=49.35 E-value=51 Score=21.63 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=26.4
Q ss_pred EEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCC
Q 043556 7 LVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 7 l~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~ 40 (166)
+++..+..|.-.-+..+++.|+++|+.|..+...
T Consensus 2 vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~~ 35 (145)
T PF12695_consen 2 VVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDYP 35 (145)
T ss_dssp EEEECTTTTTTHHHHHHHHHHHHTTEEEEEESCT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEecC
Confidence 4455555667778999999999999998887543
No 294
>PLN02316 synthase/transferase
Probab=49.07 E-value=17 Score=33.50 Aligned_cols=39 Identities=15% Similarity=0.279 Sum_probs=28.8
Q ss_pred CEEEEEcCCC-----CCChH-HHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 4 PHVLVIPAPA-----QGHVI-PLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 4 ~~il~~~~p~-----~GH~~-P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
+||++++.-. .|-+. -.-.|+++|+++||+|.++++...
T Consensus 588 M~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~ 632 (1036)
T PLN02316 588 MHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYD 632 (1036)
T ss_pred cEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCc
Confidence 6788776322 34443 347899999999999999999753
No 295
>PRK11914 diacylglycerol kinase; Reviewed
Probab=49.02 E-value=66 Score=24.98 Aligned_cols=41 Identities=22% Similarity=0.162 Sum_probs=28.0
Q ss_pred CCCCEEEEEcCCCCCCh---HHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 1 MSNPHVLVIPAPAQGHV---IPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 1 ~~~~~il~~~~p~~GH~---~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
|+..+++++-.|..|.- .-.-++.+.|.++|++++++.+..
T Consensus 6 ~~~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~ 49 (306)
T PRK11914 6 HEIGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTD 49 (306)
T ss_pred CCCceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 45567777766665542 344578889999999988766543
No 296
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=48.98 E-value=38 Score=25.50 Aligned_cols=21 Identities=33% Similarity=0.113 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHCCCEEEEEeC
Q 043556 19 PLLEFSQCLANHGVRVTFVNS 39 (166)
Q Consensus 19 P~l~la~~L~~rGh~Vt~~t~ 39 (166)
-+-.....++++|++|++++-
T Consensus 26 g~ggtla~~~~~G~~V~v~~l 46 (237)
T COG2120 26 GCGGTLAKLAARGVEVTVVCL 46 (237)
T ss_pred ccHHHHHHHHHCCCeEEEEEc
Confidence 344566778999999998763
No 297
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=48.93 E-value=42 Score=22.51 Aligned_cols=41 Identities=10% Similarity=0.000 Sum_probs=23.9
Q ss_pred HHHHHHhhcCCCCccEEEecCcc-----chHHHHHHHhCCceEEEccc
Q 043556 95 ELIEEINEKEDEKIDCFIADAYM-----GWTMRIAEKMKLRRGVVWPS 137 (166)
Q Consensus 95 ~ll~~l~~~~~~~~d~iI~D~~~-----~~~~~vA~~l~iP~i~~~~~ 137 (166)
++.+.+.++ .+|-+++..... .....+|+++|+|++..+..
T Consensus 3 ~~~~~L~~A--~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~ 48 (137)
T PF00205_consen 3 EAADLLSSA--KRPVILAGRGARRSGAAEELRELAEKLGIPVATTPMG 48 (137)
T ss_dssp HHHHHHHH---SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGG
T ss_pred HHHHHHHhC--CCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCcc
Confidence 344444432 566555544322 12467999999999876644
No 298
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=48.85 E-value=45 Score=24.27 Aligned_cols=33 Identities=12% Similarity=-0.014 Sum_probs=25.5
Q ss_pred CCccEEE-ecC-ccchHHHHHHHhCCceEEEcccc
Q 043556 106 EKIDCFI-ADA-YMGWTMRIAEKMKLRRGVVWPSS 138 (166)
Q Consensus 106 ~~~d~iI-~D~-~~~~~~~vA~~l~iP~i~~~~~~ 138 (166)
.++|+|+ .+. ..+.+..+|.++|+|.+...-..
T Consensus 49 ~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vRK~~ 83 (189)
T PRK09219 49 EGITKILTIEASGIAPAVMAALALGVPVVFAKKKK 83 (189)
T ss_pred CCCCEEEEEccccHHHHHHHHHHHCCCEEEEEECC
Confidence 4689998 444 33568889999999999987654
No 299
>PRK07236 hypothetical protein; Provisional
Probab=48.83 E-value=21 Score=28.54 Aligned_cols=34 Identities=26% Similarity=0.235 Sum_probs=25.7
Q ss_pred CCCCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeC
Q 043556 1 MSNPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNS 39 (166)
Q Consensus 1 ~~~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~ 39 (166)
|+..+|+++-.+-- =+.+|..|+++|++|+++=-
T Consensus 4 ~~~~~ViIVGaG~a-----Gl~~A~~L~~~G~~v~v~E~ 37 (386)
T PRK07236 4 MSGPRAVVIGGSLG-----GLFAALLLRRAGWDVDVFER 37 (386)
T ss_pred CCCCeEEEECCCHH-----HHHHHHHHHhCCCCEEEEec
Confidence 55678887765532 36788899999999999863
No 300
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=48.82 E-value=49 Score=24.12 Aligned_cols=38 Identities=11% Similarity=0.306 Sum_probs=31.2
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcch
Q 043556 6 VLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNH 43 (166)
Q Consensus 6 il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~ 43 (166)
|+++-..|-|=......||..++.+|.+|.+++.+.++
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 56667777899999999999999999999999988654
No 301
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=48.72 E-value=35 Score=28.73 Aligned_cols=43 Identities=21% Similarity=0.215 Sum_probs=32.2
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHH
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRV 46 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~ 46 (166)
..||++.-.++.+ ..=..+|.+.|.++|++|.++.++...+.+
T Consensus 70 ~k~IllgVtGsIA-ayka~~lvr~L~k~G~~V~VvmT~sA~~fv 112 (475)
T PRK13982 70 SKRVTLIIGGGIA-AYKALDLIRRLKERGAHVRCVLTKAAQQFV 112 (475)
T ss_pred CCEEEEEEccHHH-HHHHHHHHHHHHhCcCEEEEEECcCHHHHh
Confidence 3567776665543 346789999999999999999998754443
No 302
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=48.38 E-value=1.2e+02 Score=23.00 Aligned_cols=99 Identities=14% Similarity=0.139 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHCC-CEEEEEeCCcc--hhHHHhhhccCCCCCCCeeeeecCC-CCCCCcCchhHHHHHHHHHhhccHHH
Q 043556 18 IPLLEFSQCLANHG-VRVTFVNSEYN--HQRVLKSLEGKNNLEEKIRLVSIPD-GMEPWEDRNELGNKLKKILQVMPGNL 93 (166)
Q Consensus 18 ~P~l~la~~L~~rG-h~Vt~~t~~~~--~~~~~~~~~~~~~~~~~i~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (166)
+|...+..+|..-| -+|.++||... ...+.+.+. ..||++..+-. +..... . +.+.-.+.+
T Consensus 106 t~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~-----~~G~eV~~~~~~~~~~~~---~-------ia~i~p~~i 170 (239)
T TIGR02990 106 TPSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFA-----VRGFEIVNFTCLGLTDDR---E-------MARISPDCI 170 (239)
T ss_pred CHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHH-----hCCcEEeeeeccCCCCCc---e-------eeecCHHHH
Confidence 56777777777766 56666666432 122222221 13666655421 111110 0 111111223
Q ss_pred HHHHHHHhhcCCCCccEEEecCccchH----HHHHHHhCCceEEE
Q 043556 94 EELIEEINEKEDEKIDCFIADAYMGWT----MRIAEKMKLRRGVV 134 (166)
Q Consensus 94 ~~ll~~l~~~~~~~~d~iI~D~~~~~~----~~vA~~l~iP~i~~ 134 (166)
.+.++++. ...+|.|+.-+..... ..+-+++|+|++.-
T Consensus 171 ~~~~~~~~---~~~aDAifisCTnLrt~~vi~~lE~~lGkPVlsS 212 (239)
T TIGR02990 171 VEAALAAF---DPDADALFLSCTALRAATCAQRIEQAIGKPVVTS 212 (239)
T ss_pred HHHHHHhc---CCCCCEEEEeCCCchhHHHHHHHHHHHCCCEEEH
Confidence 44444432 2578988877655433 34556689999753
No 303
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=48.34 E-value=85 Score=21.34 Aligned_cols=44 Identities=18% Similarity=0.162 Sum_probs=36.4
Q ss_pred CCCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhH
Q 043556 2 SNPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQR 45 (166)
Q Consensus 2 ~~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~ 45 (166)
++.+|++.+..+-+|-.---=++..|...|++|.........+.
T Consensus 1 ~~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~ 44 (132)
T TIGR00640 1 RRPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEE 44 (132)
T ss_pred CCCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHH
Confidence 46899999999999999888888899999999998776544333
No 304
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=48.27 E-value=39 Score=28.60 Aligned_cols=27 Identities=11% Similarity=0.191 Sum_probs=22.2
Q ss_pred CCccEEEecCccchHHHHHHHhCCceEEEc
Q 043556 106 EKIDCFIADAYMGWTMRIAEKMKLRRGVVW 135 (166)
Q Consensus 106 ~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~ 135 (166)
.+||+||.+. ....+|+++|||.+.+.
T Consensus 363 ~~pdliiG~~---~er~~a~~lgip~~~i~ 389 (511)
T TIGR01278 363 LEPELVLGTQ---MERHSAKRLDIPCGVIS 389 (511)
T ss_pred cCCCEEEECh---HHHHHHHHcCCCEEEec
Confidence 4789999887 46778999999998764
No 305
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=47.77 E-value=90 Score=21.44 Aligned_cols=44 Identities=9% Similarity=0.107 Sum_probs=37.0
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHH
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRV 46 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~ 46 (166)
+.+|++.+..+-+|-.----++..|.+.|++|..+...-..+.+
T Consensus 1 ~~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~ 44 (134)
T TIGR01501 1 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEF 44 (134)
T ss_pred CCeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 36899999999999999989999999999999998776554443
No 306
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=47.75 E-value=2e+02 Score=25.54 Aligned_cols=40 Identities=15% Similarity=0.385 Sum_probs=30.9
Q ss_pred CCEEEEEcCCC--CCChHHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 3 NPHVLVIPAPA--QGHVIPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 3 ~~~il~~~~p~--~GH~~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
..+++.++++. .|=-.-...||..|+..|.+|-++=.+..
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r 571 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLR 571 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 35677777654 57778889999999999999988866543
No 307
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=47.72 E-value=25 Score=28.91 Aligned_cols=33 Identities=21% Similarity=0.399 Sum_probs=23.9
Q ss_pred EEEcCCC---CCChHHHHHHHHHHHHCCCEEEEEeCC
Q 043556 7 LVIPAPA---QGHVIPLLEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 7 l~~~~p~---~GH~~P~l~la~~L~~rGh~Vt~~t~~ 40 (166)
.+=|++. -||+.|++. .+.|++.||++.++...
T Consensus 39 G~dPT~~sLHlGhlv~l~~-l~~lq~~G~~~~~ligd 74 (410)
T PRK13354 39 GFDPTAPSLHIGHLVPLMK-LKRFQDAGHRPVILIGG 74 (410)
T ss_pred cccCCCCCcchhhHHHHHH-HHHHHHcCCeEEEEEcc
Confidence 3445542 399999555 56889999999998854
No 308
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=47.66 E-value=41 Score=27.73 Aligned_cols=27 Identities=37% Similarity=0.443 Sum_probs=22.2
Q ss_pred CCccEEEecCccchHHHHHHHhCCceEEEc
Q 043556 106 EKIDCFIADAYMGWTMRIAEKMKLRRGVVW 135 (166)
Q Consensus 106 ~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~ 135 (166)
.++|++|.+.. ...+|+++|||.+...
T Consensus 371 ~~~dliiG~s~---~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 371 LKIDVLIGNSY---GRRIAEKLGIPLIRIG 397 (429)
T ss_pred cCCCEEEECch---hHHHHHHcCCCEEEec
Confidence 57899998874 5789999999998664
No 309
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=47.61 E-value=29 Score=26.21 Aligned_cols=26 Identities=12% Similarity=0.313 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 17 VIPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 17 ~~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
+-+++++.+.|.++|+.|-++|....
T Consensus 122 ip~al~l~~~l~~~G~~Vf~lTGR~e 147 (229)
T TIGR01675 122 LPEGLKLYQKIIELGIKIFLLSGRWE 147 (229)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCCh
Confidence 35789999999999999999999864
No 310
>COG3150 Predicted esterase [General function prediction only]
Probab=47.49 E-value=35 Score=24.73 Aligned_cols=32 Identities=9% Similarity=-0.009 Sum_probs=24.2
Q ss_pred cEEEec-CccchHHHHHHHhCCceEEEccccHH
Q 043556 109 DCFIAD-AYMGWTMRIAEKMKLRRGVVWPSSAA 140 (166)
Q Consensus 109 d~iI~D-~~~~~~~~vA~~l~iP~i~~~~~~~~ 140 (166)
-+|+.. ..-.|+..+++.+||+.+.+.|.-.-
T Consensus 61 p~ivGssLGGY~At~l~~~~Girav~~NPav~P 93 (191)
T COG3150 61 PLIVGSSLGGYYATWLGFLCGIRAVVFNPAVRP 93 (191)
T ss_pred ceEEeecchHHHHHHHHHHhCChhhhcCCCcCc
Confidence 344433 34578999999999999999987543
No 311
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=47.44 E-value=44 Score=21.83 Aligned_cols=38 Identities=11% Similarity=0.194 Sum_probs=26.0
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCC-EEEEEeCC
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGV-RVTFVNSE 40 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh-~Vt~~t~~ 40 (166)
+++++.++.....|.....++++.+.+++. ++.++...
T Consensus 50 ~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG 88 (119)
T cd02067 50 DADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGG 88 (119)
T ss_pred CCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEEC
Confidence 456677777666777777777777777766 66655443
No 312
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=47.44 E-value=63 Score=22.64 Aligned_cols=38 Identities=11% Similarity=-0.005 Sum_probs=25.1
Q ss_pred HHHHHHHHhhcCCCCccEEE--ecCccchHHHHHHHhCCceE
Q 043556 93 LEELIEEINEKEDEKIDCFI--ADAYMGWTMRIAEKMKLRRG 132 (166)
Q Consensus 93 ~~~ll~~l~~~~~~~~d~iI--~D~~~~~~~~vA~~l~iP~i 132 (166)
.+++.+++.+. .++|+|| .-..+..+..+++++|+|.+
T Consensus 19 i~~la~~I~~~--~~~d~vvgv~~GG~~fa~~L~~~L~~~~v 58 (156)
T PRK09177 19 ARALAWRLLPA--GQWKGIIAVTRGGLVPAAILARELGIRLV 58 (156)
T ss_pred HHHHHHHHHhh--CCCCEEEEEecCCeehHHHHHHHcCCCce
Confidence 44445554432 2578877 33455679999999999975
No 313
>PTZ00445 p36-lilke protein; Provisional
Probab=47.40 E-value=24 Score=26.42 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=23.2
Q ss_pred CChHH-HHHHHHHHHHCCCEEEEEeCCcc
Q 043556 15 GHVIP-LLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 15 GH~~P-~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
+|..| +..+.++|.++|..|+++|-.+.
T Consensus 74 ~~~tpefk~~~~~l~~~~I~v~VVTfSd~ 102 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNSNIKISVVTFSDK 102 (219)
T ss_pred ccCCHHHHHHHHHHHHCCCeEEEEEccch
Confidence 45566 78899999999999999997654
No 314
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=47.32 E-value=1.2e+02 Score=22.90 Aligned_cols=37 Identities=8% Similarity=0.235 Sum_probs=28.0
Q ss_pred CEEEEEcCCC--CCChHHHHHHHHHHHHCCCEEEEEeCC
Q 043556 4 PHVLVIPAPA--QGHVIPLLEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 4 ~~il~~~~p~--~GH~~P~l~la~~L~~rGh~Vt~~t~~ 40 (166)
.+++.++.+. .|=-.-...||..|++.|.+|-++=..
T Consensus 103 ~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D 141 (274)
T TIGR03029 103 RKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDAN 141 (274)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 5666666544 466677889999999999999988543
No 315
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=47.26 E-value=84 Score=21.85 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=33.4
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchh
Q 043556 6 VLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQ 44 (166)
Q Consensus 6 il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~ 44 (166)
+++.-.||.|=-.....++..++++|.+|.++..+....
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~ 41 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRP 41 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCh
Confidence 567778888999999999999999999999998876543
No 316
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=47.23 E-value=29 Score=26.22 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=30.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeC
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNS 39 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~ 39 (166)
=|.+.-.|+.|-..-.-+|+++|.++||+|..++.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 46677789999999999999999999999877655
No 317
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=47.19 E-value=42 Score=24.47 Aligned_cols=34 Identities=18% Similarity=0.054 Sum_probs=24.8
Q ss_pred CCccEEEecCcc--chHHHHHHHhCCceEEEccccH
Q 043556 106 EKIDCFIADAYM--GWTMRIAEKMKLRRGVVWPSSA 139 (166)
Q Consensus 106 ~~~d~iI~D~~~--~~~~~vA~~l~iP~i~~~~~~~ 139 (166)
-+||+||..... .....-..+.+||++.+.....
T Consensus 59 l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~~ 94 (238)
T PF01497_consen 59 LKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSSP 94 (238)
T ss_dssp T--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTTC
T ss_pred CCCCEEEEeccccchHHHHHHhcccceEEEeecccc
Confidence 479999987766 4456667778999999988763
No 318
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=46.98 E-value=36 Score=23.19 Aligned_cols=38 Identities=21% Similarity=0.290 Sum_probs=31.0
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCC-EEEEEeCC
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGV-RVTFVNSE 40 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh-~Vt~~t~~ 40 (166)
.++++.++.-..+|.--+-.+.++|.++|. ++.++...
T Consensus 53 ~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG 91 (132)
T TIGR00640 53 DVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGG 91 (132)
T ss_pred CCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 467888888888899999999999999887 66666653
No 319
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=46.96 E-value=65 Score=24.75 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=27.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
+++++..+. =+.|++.+++.|+++|.+|+++.....
T Consensus 100 ~~llIaGGi--GiaPl~~l~~~l~~~~~~v~l~~g~r~ 135 (281)
T PRK06222 100 TVVCVGGGV--GIAPVYPIAKALKEAGNKVITIIGARN 135 (281)
T ss_pred eEEEEeCcC--cHHHHHHHHHHHHHCCCeEEEEEecCC
Confidence 566665333 589999999999999999998876543
No 320
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=46.94 E-value=56 Score=24.86 Aligned_cols=43 Identities=14% Similarity=0.202 Sum_probs=34.7
Q ss_pred CCCCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcch
Q 043556 1 MSNPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNH 43 (166)
Q Consensus 1 ~~~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~ 43 (166)
|.+.+++.-.=+|.|=-.....|+..|+++|.+|.++-.+...
T Consensus 1 m~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n 43 (241)
T PRK13886 1 MAKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVN 43 (241)
T ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 5556666667778888899999999999999999988766543
No 321
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=46.76 E-value=55 Score=27.21 Aligned_cols=41 Identities=7% Similarity=0.168 Sum_probs=35.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhH
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQR 45 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~ 45 (166)
-|+++-.+|.|=......||..|.++|++|.+++.+.+...
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~a 142 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAG 142 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchh
Confidence 46777788889999999999999999999999998876543
No 322
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=46.62 E-value=46 Score=26.48 Aligned_cols=37 Identities=19% Similarity=0.384 Sum_probs=31.2
Q ss_pred CEEEE--EcCCCCCChHHHHHHHHHHHHCCCEEEEEeCC
Q 043556 4 PHVLV--IPAPAQGHVIPLLEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 4 ~~il~--~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~ 40 (166)
+=|.+ ++.+|.|=.--.+.|++.|.++|++|.+++-.
T Consensus 50 pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRG 88 (325)
T PRK00652 50 PVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRG 88 (325)
T ss_pred CEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCC
Confidence 34555 78889999999999999999999999998754
No 323
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=46.62 E-value=67 Score=26.75 Aligned_cols=40 Identities=10% Similarity=0.336 Sum_probs=34.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchh
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQ 44 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~ 44 (166)
.|+++-.+|.|=..-...||..|.++|++|.+++.+.+..
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 5777888888999999999999999999999998876544
No 324
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=46.58 E-value=81 Score=20.61 Aligned_cols=51 Identities=14% Similarity=0.264 Sum_probs=33.6
Q ss_pred CCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCC
Q 043556 11 APAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGM 69 (166)
Q Consensus 11 ~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~ 69 (166)
..-.|--.-+++.++.++++|..|..+|........... .++....+|++.
T Consensus 50 iS~SG~t~e~i~~~~~a~~~g~~iI~IT~~~~l~~~~~~--------~~~~~~~~p~~~ 100 (119)
T cd05017 50 VSYSGNTEETLSAVEQAKERGAKIVAITSGGKLLEMARE--------HGVPVIIIPKGL 100 (119)
T ss_pred EECCCCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHH--------cCCcEEECCCCC
Confidence 344477778899999999999999988865533322211 255556666554
No 325
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=46.51 E-value=39 Score=20.74 Aligned_cols=36 Identities=17% Similarity=0.324 Sum_probs=30.0
Q ss_pred EEEEEcCCCCCChHHH-HHHHHHHHHCCCEEEEEeCC
Q 043556 5 HVLVIPAPAQGHVIPL-LEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~-l~la~~L~~rGh~Vt~~t~~ 40 (166)
||++++..|.|.-.-. ..+=+.+.++|.+++.....
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~ 37 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIEVEVSAGS 37 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCceEEEEec
Confidence 6899999999888877 78888899999887776655
No 326
>PRK05993 short chain dehydrogenase; Provisional
Probab=46.47 E-value=42 Score=25.40 Aligned_cols=37 Identities=16% Similarity=0.153 Sum_probs=24.7
Q ss_pred CCCCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCC
Q 043556 1 MSNPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 1 ~~~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~ 40 (166)
|...+.++++.++ |-+ =..++++|+++|++|.++.-.
T Consensus 1 m~~~k~vlItGas-ggi--G~~la~~l~~~G~~Vi~~~r~ 37 (277)
T PRK05993 1 MDMKRSILITGCS-SGI--GAYCARALQSDGWRVFATCRK 37 (277)
T ss_pred CCCCCEEEEeCCC-cHH--HHHHHHHHHHCCCEEEEEECC
Confidence 4445566666654 322 256789999999999887643
No 327
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=46.43 E-value=40 Score=26.46 Aligned_cols=39 Identities=21% Similarity=0.328 Sum_probs=29.2
Q ss_pred EEEEEcC-CCCCChHHHHHHHHHHHHCCCEEEEEeCCcch
Q 043556 5 HVLVIPA-PAQGHVIPLLEFSQCLANHGVRVTFVNSEYNH 43 (166)
Q Consensus 5 ~il~~~~-p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~ 43 (166)
|++++.. +|-|=-.-...+|..++++|++|-++++++..
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAH 41 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc
Confidence 4445444 44577788888999999999999999988754
No 328
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=46.26 E-value=41 Score=25.30 Aligned_cols=43 Identities=23% Similarity=0.393 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhcCCCCccEEEecCccch--HHHHHHHhCCceEEEccc
Q 043556 92 NLEELIEEINEKEDEKIDCFIADAYMGW--TMRIAEKMKLRRGVVWPS 137 (166)
Q Consensus 92 ~~~~ll~~l~~~~~~~~d~iI~D~~~~~--~~~vA~~l~iP~i~~~~~ 137 (166)
.+.++.+.+++ .+..+|+.+..... +..+|++.|+|.+.+-+.
T Consensus 187 ~l~~l~~~ik~---~~v~~i~~e~~~~~~~~~~la~~~g~~vv~ld~l 231 (256)
T PF01297_consen 187 DLAELIKLIKE---NKVKCIFTEPQFSSKLAEALAKETGVKVVYLDPL 231 (256)
T ss_dssp HHHHHHHHHHH---TT-SEEEEETTS-THHHHHHHHCCT-EEEESSTT
T ss_pred HHHHHHHHhhh---cCCcEEEecCCCChHHHHHHHHHcCCcEEEeCCC
Confidence 35566666654 68999999986643 577999999999887776
No 329
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=46.12 E-value=33 Score=23.19 Aligned_cols=40 Identities=13% Similarity=0.241 Sum_probs=35.6
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
+..+-+.|..|.+.+.|.-++...|.+.-.++.++++.+.
T Consensus 46 ~Lql~i~pasGrrkLspt~emi~~l~~geIel~VLttqpD 85 (144)
T PF10657_consen 46 KLQLTISPASGRRKLSPTPEMIDKLISGEIELFVLTTQPD 85 (144)
T ss_pred ceEEEEecCCCccccCCcHHHHHHHhcCceEEEEEccCCC
Confidence 3568889999999999999999999999999999998753
No 330
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=46.12 E-value=39 Score=25.15 Aligned_cols=32 Identities=16% Similarity=-0.092 Sum_probs=21.5
Q ss_pred CCccEEEecCccch--H-HHHHHHhCCceEEEccc
Q 043556 106 EKIDCFIADAYMGW--T-MRIAEKMKLRRGVVWPS 137 (166)
Q Consensus 106 ~~~d~iI~D~~~~~--~-~~vA~~l~iP~i~~~~~ 137 (166)
-+||+||....... . ..+.+..|+|++.+...
T Consensus 73 l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~ 107 (262)
T cd01147 73 LKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGG 107 (262)
T ss_pred cCCCEEEEecCCccchhHHHHHHhhCCCEEEEecC
Confidence 47999997654332 2 33445589999988754
No 331
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=45.95 E-value=29 Score=24.60 Aligned_cols=35 Identities=31% Similarity=0.344 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEe
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVN 38 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t 38 (166)
..+|++++.++. .=-=-+.+|+.|+++|++|+++.
T Consensus 25 ~~~v~il~G~Gn-NGgDgl~~AR~L~~~G~~V~v~~ 59 (169)
T PF03853_consen 25 GPRVLILCGPGN-NGGDGLVAARHLANRGYNVTVYL 59 (169)
T ss_dssp T-EEEEEE-SSH-HHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCeEEEEECCCC-ChHHHHHHHHHHHHCCCeEEEEE
Confidence 457777777762 11224678999999999999944
No 332
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=45.76 E-value=45 Score=22.05 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=23.7
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeC
Q 043556 4 PHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNS 39 (166)
Q Consensus 4 ~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~ 39 (166)
.++++++++.. +...++.++.|.+.|.+++++..
T Consensus 10 ~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~ 43 (124)
T PF02780_consen 10 ADITIIAYGSM--VEEALEAAEELEEEGIKAGVIDL 43 (124)
T ss_dssp SSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEee
Confidence 45667766665 45667788888888887777554
No 333
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=45.42 E-value=1.4e+02 Score=27.86 Aligned_cols=84 Identities=17% Similarity=0.078 Sum_probs=50.1
Q ss_pred ChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCCCCCcCchhHHHHHHHHHhhccHHHHH
Q 043556 16 HVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGMEPWEDRNELGNKLKKILQVMPGNLEE 95 (166)
Q Consensus 16 H~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (166)
+-.-++++++.|.+.|+++ +++....+..... ++.+..+.... + ..+.+.+
T Consensus 948 ~k~~~~~~~~~l~~~g~~~--~at~gta~~l~~~---------gi~~~~~~~~~-~-----------------~~~~~~~ 998 (1050)
T TIGR01369 948 DKEELLDLARKLAEKGYKL--YATEGTAKFLGEA---------GIKPELVLKVS-E-----------------GRPNILD 998 (1050)
T ss_pred chHHHHHHHHHHHHCCCEE--EEechHHHHHHHC---------CCceEEEeecC-C-----------------CCccHHH
Confidence 4456778888888888774 4555555555432 55554432110 0 0122445
Q ss_pred HHHHHhhcCCCCccEEEecCc--------cchHHHHHHHhCCceEEE
Q 043556 96 LIEEINEKEDEKIDCFIADAY--------MGWTMRIAEKMKLRRGVV 134 (166)
Q Consensus 96 ll~~l~~~~~~~~d~iI~D~~--------~~~~~~vA~~l~iP~i~~ 134 (166)
++++ .++|+||..+. .......|=++|||+++-
T Consensus 999 ~i~~------~~i~lvin~~~~~~~~~~~g~~iRr~Ai~~~ip~~t~ 1039 (1050)
T TIGR01369 999 LIKN------GEIELVINTTSKGAGTATDGYKIRREALDYGVPLITT 1039 (1050)
T ss_pred HHHc------CCeEEEEECCCCCcccccccHHHHHHHHHcCCCEEec
Confidence 5543 68999997653 123567899999999853
No 334
>PRK10867 signal recognition particle protein; Provisional
Probab=45.22 E-value=64 Score=26.82 Aligned_cols=42 Identities=10% Similarity=0.205 Sum_probs=35.6
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHC-CCEEEEEeCCcchhHH
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANH-GVRVTFVNSEYNHQRV 46 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~r-Gh~Vt~~t~~~~~~~~ 46 (166)
-|+++-.+|.|=......||..|+.+ |.+|.+++.+.+...+
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa 144 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAA 144 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHH
Confidence 46677778889999999999999999 9999999998765543
No 335
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=45.19 E-value=44 Score=25.79 Aligned_cols=35 Identities=6% Similarity=-0.000 Sum_probs=29.6
Q ss_pred CCccEEEecCccch-HHHHHHHhCCceEEEccccHH
Q 043556 106 EKIDCFIADAYMGW-TMRIAEKMKLRRGVVWPSSAA 140 (166)
Q Consensus 106 ~~~d~iI~D~~~~~-~~~vA~~l~iP~i~~~~~~~~ 140 (166)
...|+|+.+..-.. +..+.+++.||.+.+...+.+
T Consensus 172 AGA~~ivlE~vp~~~a~~It~~l~iP~iGIGaG~~~ 207 (263)
T TIGR00222 172 AGAQLLVLECVPVELAAKITEALAIPVIGIGAGNVC 207 (263)
T ss_pred cCCCEEEEcCCcHHHHHHHHHhCCCCEEeeccCCCC
Confidence 57899999988754 678999999999998877765
No 336
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=45.15 E-value=47 Score=28.31 Aligned_cols=41 Identities=10% Similarity=0.259 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhhcCCCCccEEEecCccchHHHHHHHhCCceEEEccc
Q 043556 91 GNLEELIEEINEKEDEKIDCFIADAYMGWTMRIAEKMKLRRGVVWPS 137 (166)
Q Consensus 91 ~~~~~ll~~l~~~~~~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~~~ 137 (166)
...++.++++.+ .++++||.|.. +..+|+++|++.+.+.+.
T Consensus 132 ~e~~~~~~~l~~---~G~~~viG~~~---~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 132 EDARSCVNDLRA---RGIGAVVGAGL---ITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHHHHHHHHH---CCCCEEECChH---HHHHHHHcCCceEEEecH
Confidence 446667777764 68999999985 568999999999988764
No 337
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=45.07 E-value=53 Score=25.80 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=29.6
Q ss_pred CCCCEEEEEcCCCCCChHH-HHHHHHHHHHCCCEEEEEeC
Q 043556 1 MSNPHVLVIPAPAQGHVIP-LLEFSQCLANHGVRVTFVNS 39 (166)
Q Consensus 1 ~~~~~il~~~~p~~GH~~P-~l~la~~L~~rGh~Vt~~t~ 39 (166)
|+..+++++..++.++... +..+.+.|.++|++|.+...
T Consensus 1 ~~~kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~ 40 (305)
T PRK02645 1 MQLKQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPS 40 (305)
T ss_pred CCcCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecC
Confidence 7777899999997767654 44556668899999888654
No 338
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=45.04 E-value=28 Score=27.52 Aligned_cols=33 Identities=27% Similarity=0.274 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeC
Q 043556 2 SNPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNS 39 (166)
Q Consensus 2 ~~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~ 39 (166)
.+.+|+++=.+..| +.+|.+|+++|++|+++--
T Consensus 2 ~~~dv~IIGgGi~G-----~s~A~~L~~~g~~V~lie~ 34 (376)
T PRK11259 2 MRYDVIVIGLGSMG-----SAAGYYLARRGLRVLGLDR 34 (376)
T ss_pred CcccEEEECCCHHH-----HHHHHHHHHCCCeEEEEec
Confidence 34456666555444 6678999999999999854
No 339
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=44.60 E-value=47 Score=27.27 Aligned_cols=27 Identities=19% Similarity=0.173 Sum_probs=22.3
Q ss_pred CCccEEEecCccchHHHHHHHhCCceEEEc
Q 043556 106 EKIDCFIADAYMGWTMRIAEKMKLRRGVVW 135 (166)
Q Consensus 106 ~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~ 135 (166)
.+||+||.+.. ...+|+++|+|.+.+.
T Consensus 370 ~~pdliig~~~---~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 370 EPVDLLIGNSH---GRYLARDLGIPLVRVG 396 (428)
T ss_pred cCCCEEEECch---hHHHHHhcCCCEEEec
Confidence 57999999875 4789999999998654
No 340
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=44.51 E-value=49 Score=28.10 Aligned_cols=27 Identities=7% Similarity=0.111 Sum_probs=21.6
Q ss_pred CCccEEEecCccchHHHHHHHhCCceEEEc
Q 043556 106 EKIDCFIADAYMGWTMRIAEKMKLRRGVVW 135 (166)
Q Consensus 106 ~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~ 135 (166)
.+||+||.+. ....+|+++|||++.+.
T Consensus 361 ~~PdliiG~~---~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 361 AAPELVLGTQ---MERHSAKRLGIPCAVIS 387 (519)
T ss_pred cCCCEEEEcc---hHHHHHHHcCCCEEEec
Confidence 4789999766 46779999999998663
No 341
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=44.42 E-value=46 Score=25.52 Aligned_cols=49 Identities=12% Similarity=0.106 Sum_probs=34.7
Q ss_pred HHHHHHHHhhcCCCCccEEEecCccch-HHHHHHHhCCceEEEccccHHH
Q 043556 93 LEELIEEINEKEDEKIDCFIADAYMGW-TMRIAEKMKLRRGVVWPSSAAS 141 (166)
Q Consensus 93 ~~~ll~~l~~~~~~~~d~iI~D~~~~~-~~~vA~~l~iP~i~~~~~~~~~ 141 (166)
.+++++...+-.+...|+|+.+..-.. +..+.+++.+|.|.+...+.+.
T Consensus 157 a~~~i~ra~a~~~AGA~~i~lE~v~~~~~~~i~~~v~iP~igiGaG~~~d 206 (254)
T cd06557 157 AERLLEDALALEEAGAFALVLECVPAELAKEITEALSIPTIGIGAGPDCD 206 (254)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCCCHHHHHHHHHhCCCCEEEeccCCCCC
Confidence 344444432221257899999988543 6779999999999999888653
No 342
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=44.36 E-value=72 Score=23.65 Aligned_cols=36 Identities=28% Similarity=0.344 Sum_probs=24.8
Q ss_pred EEEEEcCC-CCCChHHHHHHHHHHHHCCCEEEEEeCC
Q 043556 5 HVLVIPAP-AQGHVIPLLEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 5 ~il~~~~p-~~GH~~P~l~la~~L~~rGh~Vt~~t~~ 40 (166)
.|++++=+ -.+...+..+..++|.+||++|.++++.
T Consensus 152 ~vvIiSDg~~~~~~~~~~~~l~~l~~r~~rviwLnP~ 188 (222)
T PF05762_consen 152 TVVIISDGWDTNDPEPLAEELRRLRRRGRRVIWLNPL 188 (222)
T ss_pred EEEEEecccccCChHHHHHHHHHHHHhCCEEEEECCc
Confidence 34444444 3577777777777777888888777776
No 343
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=44.11 E-value=47 Score=25.63 Aligned_cols=35 Identities=6% Similarity=-0.012 Sum_probs=29.2
Q ss_pred CCccEEEecCccch-HHHHHHHhCCceEEEccccHH
Q 043556 106 EKIDCFIADAYMGW-TMRIAEKMKLRRGVVWPSSAA 140 (166)
Q Consensus 106 ~~~d~iI~D~~~~~-~~~vA~~l~iP~i~~~~~~~~ 140 (166)
...|+|+.+..-.. +..+.+++.+|.|.+...+.+
T Consensus 173 AGA~~i~lE~v~~~~~~~i~~~l~iP~igiGaG~~~ 208 (264)
T PRK00311 173 AGAFALVLECVPAELAKEITEALSIPTIGIGAGPDC 208 (264)
T ss_pred CCCCEEEEcCCCHHHHHHHHHhCCCCEEEeccCCCC
Confidence 57899999988543 677999999999998877765
No 344
>PRK05973 replicative DNA helicase; Provisional
Probab=44.06 E-value=78 Score=23.99 Aligned_cols=44 Identities=27% Similarity=0.327 Sum_probs=36.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHh
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLK 48 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~ 48 (166)
=+++.--||.|=-.-.++++...+.+|..|.+++.+.....+..
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~ 109 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRD 109 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHH
Confidence 35677788999999999999999999999999999877655544
No 345
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=44.01 E-value=56 Score=22.14 Aligned_cols=36 Identities=19% Similarity=0.386 Sum_probs=25.6
Q ss_pred cCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhH
Q 043556 10 PAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQR 45 (166)
Q Consensus 10 ~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~ 45 (166)
+.++.|=-.-.+.+|+.|+++|++|-++-.......
T Consensus 8 ~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~~ 43 (157)
T PF13614_consen 8 PKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSPS 43 (157)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-H
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCCC
Confidence 366778888999999999999999777766554433
No 346
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=43.94 E-value=89 Score=26.61 Aligned_cols=37 Identities=16% Similarity=0.372 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecC
Q 043556 19 PLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIP 66 (166)
Q Consensus 19 P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 66 (166)
=++++++.|.+.|+++ +++....+.++.. |+.+..+.
T Consensus 12 ~iv~lAk~L~~lGfeI--iATgGTak~L~e~---------GI~v~~Vs 48 (511)
T TIGR00355 12 GIVEFAQGLVERGVEL--LSTGGTAKLLAEA---------GVPVTEVS 48 (511)
T ss_pred cHHHHHHHHHHCCCEE--EEechHHHHHHHC---------CCeEEEee
Confidence 3678999999999886 5777777777653 77776654
No 347
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=43.91 E-value=1.6e+02 Score=23.28 Aligned_cols=54 Identities=17% Similarity=0.282 Sum_probs=36.0
Q ss_pred EEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCC
Q 043556 8 VIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGM 69 (166)
Q Consensus 8 ~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~ 69 (166)
++...-.|.-.-++..++.+.+||..|..+|........... .+.....+|.+.
T Consensus 82 vI~iS~SG~T~e~~~a~~~a~~~ga~vIaIT~~~~L~~~a~~--------~~~~~i~ip~~~ 135 (337)
T PRK08674 82 VIAVSYSGNTEETLSAVEQALKRGAKIIAITSGGKLKEMAKE--------HGLPVIIVPGGY 135 (337)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHCCCeEEEECCCchHHHHHHh--------cCCeEEEeCCCC
Confidence 333445588888999999999999998888865432222111 256666777554
No 348
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=43.83 E-value=30 Score=26.60 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=25.0
Q ss_pred EEEcCC-C--CCChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 7 LVIPAP-A--QGHVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 7 l~~~~p-~--~GH~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
.+=|.+ . -||+.|++ ..+.|++.||++.++..+.
T Consensus 6 G~~PTg~~lHLG~~~~~~-~~~~lq~~g~~~~ilI~D~ 42 (269)
T cd00805 6 GFDPTAPSLHLGHLVPLM-KLRDFQQAGHEVIVLIGDA 42 (269)
T ss_pred eeCCCCCcccHHHHHHHH-HHHHHHHCCCeEEEEECCC
Confidence 344554 2 39999976 6788888899999887763
No 349
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=43.82 E-value=27 Score=26.97 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=17.4
Q ss_pred HHHHHHHHHCCCEEEEEeCC
Q 043556 21 LEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 21 l~la~~L~~rGh~Vt~~t~~ 40 (166)
+..|..|+++|++|+++-..
T Consensus 12 ~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 12 LSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp HHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHCCCeEEEEeec
Confidence 46788999999999999776
No 350
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=43.80 E-value=28 Score=28.42 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=25.2
Q ss_pred CCCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 2 SNPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 2 ~~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
.+.||+++-.+.-| +..++.|...+++||++...+.
T Consensus 9 ~~~~vVIvGgG~aG-----l~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 9 KKPNVVVLGTGWAG-----AYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCCeEEEECCCHHH-----HHHHHHhCcCCCeEEEEcCCCC
Confidence 45688887655433 3457788767899999987653
No 351
>PRK04148 hypothetical protein; Provisional
Probab=43.72 E-value=29 Score=23.92 Aligned_cols=31 Identities=10% Similarity=0.177 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCC
Q 043556 4 PHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 4 ~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~ 40 (166)
.+++.+-.+ .| ..+|..|++.||+|+.+=..
T Consensus 18 ~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi~ 48 (134)
T PRK04148 18 KKIVELGIG-FY-----FKVAKKLKESGFDVIVIDIN 48 (134)
T ss_pred CEEEEEEec-CC-----HHHHHHHHHCCCEEEEEECC
Confidence 345555554 33 35688999999999887544
No 352
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=43.72 E-value=37 Score=28.48 Aligned_cols=25 Identities=24% Similarity=0.161 Sum_probs=21.4
Q ss_pred CCccEEEecCccchHHHHHHHhCCceEE
Q 043556 106 EKIDCFIADAYMGWTMRIAEKMKLRRGV 133 (166)
Q Consensus 106 ~~~d~iI~D~~~~~~~~vA~~l~iP~i~ 133 (166)
.++|++|.. .....+|+++|||++-
T Consensus 392 ~~pDliig~---s~~~~~a~k~giP~~~ 416 (475)
T PRK14478 392 AKADIMLSG---GRSQFIALKAGMPWLD 416 (475)
T ss_pred cCCCEEEec---CchhhhhhhcCCCEEE
Confidence 578999986 5678999999999984
No 353
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=43.65 E-value=27 Score=26.09 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=15.8
Q ss_pred HHHHHHHHHCCCEEEEEe
Q 043556 21 LEFSQCLANHGVRVTFVN 38 (166)
Q Consensus 21 l~la~~L~~rGh~Vt~~t 38 (166)
..+|++|+++|++|+++.
T Consensus 29 ~AIA~~la~~Ga~Vvlv~ 46 (227)
T TIGR02114 29 KIITETFLSAGHEVTLVT 46 (227)
T ss_pred HHHHHHHHHCCCEEEEEc
Confidence 578899999999999875
No 354
>PLN02293 adenine phosphoribosyltransferase
Probab=43.62 E-value=72 Score=23.16 Aligned_cols=30 Identities=13% Similarity=-0.049 Sum_probs=22.5
Q ss_pred CCccEEE-ecC-ccchHHHHHHHhCCceEEEc
Q 043556 106 EKIDCFI-ADA-YMGWTMRIAEKMKLRRGVVW 135 (166)
Q Consensus 106 ~~~d~iI-~D~-~~~~~~~vA~~l~iP~i~~~ 135 (166)
.++|+|+ .|. ...++..+|.++|+|++...
T Consensus 61 ~~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~r 92 (187)
T PLN02293 61 MGISVVAGIEARGFIFGPPIALAIGAKFVPLR 92 (187)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHCCCEEEEE
Confidence 4689888 454 33568899999999988654
No 355
>PLN02240 UDP-glucose 4-epimerase
Probab=43.60 E-value=52 Score=25.71 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEe
Q 043556 4 PHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVN 38 (166)
Q Consensus 4 ~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t 38 (166)
.+|++ + ++.|.+ =..+++.|.++||+|+.+.
T Consensus 6 ~~vlI-t-GatG~i--G~~l~~~L~~~g~~V~~~~ 36 (352)
T PLN02240 6 RTILV-T-GGAGYI--GSHTVLQLLLAGYKVVVID 36 (352)
T ss_pred CEEEE-E-CCCChH--HHHHHHHHHHCCCEEEEEe
Confidence 45554 3 344555 3467899999999999885
No 356
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=43.52 E-value=1.8e+02 Score=23.57 Aligned_cols=32 Identities=19% Similarity=0.369 Sum_probs=24.6
Q ss_pred CEEEEEc-CCCCCChHHHHHHHHHHHHCCCEEEEEeCC
Q 043556 4 PHVLVIP-APAQGHVIPLLEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 4 ~~il~~~-~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~ 40 (166)
.+|+++- .+..|. .+|+.|.++||+|+++...
T Consensus 99 ~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 99 RPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred ceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCCC
Confidence 5777775 566664 5788999999999998754
No 357
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=43.27 E-value=56 Score=25.29 Aligned_cols=40 Identities=15% Similarity=0.209 Sum_probs=31.7
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcch
Q 043556 4 PHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNH 43 (166)
Q Consensus 4 ~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~ 43 (166)
..|.+.-.|+.|--.-.-.|++.|.++|++|-+++-++..
T Consensus 30 ~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSS 69 (266)
T PF03308_consen 30 HVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSS 69 (266)
T ss_dssp EEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGG
T ss_pred eEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCC
Confidence 4688888999999999999999999999999999877643
No 358
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=43.20 E-value=68 Score=25.66 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=25.2
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 4 PHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 4 ~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
.+|.++-.++-| ..||+.|++.||+|++..-...
T Consensus 2 ~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~~~ 35 (329)
T COG0240 2 MKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRDEE 35 (329)
T ss_pred ceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecCHH
Confidence 455666555544 5789999999999999887643
No 359
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=43.10 E-value=25 Score=26.27 Aligned_cols=22 Identities=14% Similarity=0.311 Sum_probs=18.6
Q ss_pred HHHHHHHHHCCCEEEEEeCCcc
Q 043556 21 LEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 21 l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
..+|+.|.++||+|+.+-....
T Consensus 13 ~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 13 RSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred HHHHHHHHhCCCceEEEEcCHH
Confidence 5789999999999999876643
No 360
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=43.08 E-value=51 Score=20.14 Aligned_cols=31 Identities=6% Similarity=0.039 Sum_probs=22.1
Q ss_pred CCccEEEecCcc--chHHHHHHHhCCceEEEcc
Q 043556 106 EKIDCFIADAYM--GWTMRIAEKMKLRRGVVWP 136 (166)
Q Consensus 106 ~~~d~iI~D~~~--~~~~~vA~~l~iP~i~~~~ 136 (166)
.+...||.+-.. +-+..+|+++|||++.-..
T Consensus 29 ~~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg~~ 61 (80)
T PF00391_consen 29 QRVAGIVTEEGGPTSHAAILARELGIPAIVGVG 61 (80)
T ss_dssp TTSSEEEESSSSTTSHHHHHHHHTT-EEEESTT
T ss_pred hheEEEEEEcCCccchHHHHHHHcCCCEEEeec
Confidence 466778877543 4578899999999987543
No 361
>PRK08265 short chain dehydrogenase; Provisional
Probab=42.97 E-value=65 Score=24.05 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=24.5
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeC
Q 043556 4 PHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNS 39 (166)
Q Consensus 4 ~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~ 39 (166)
.+.++++.++.| -=..++++|+++|++|+++.-
T Consensus 6 ~k~vlItGas~g---IG~~ia~~l~~~G~~V~~~~r 38 (261)
T PRK08265 6 GKVAIVTGGATL---IGAAVARALVAAGARVAIVDI 38 (261)
T ss_pred CCEEEEECCCCh---HHHHHHHHHHHCCCEEEEEeC
Confidence 367777776543 456788999999999988754
No 362
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=42.73 E-value=59 Score=21.19 Aligned_cols=85 Identities=14% Similarity=0.145 Sum_probs=50.9
Q ss_pred ChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCCCCCcCchhHHHHHHHHHhhccHHHHH
Q 043556 16 HVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGMEPWEDRNELGNKLKKILQVMPGNLEE 95 (166)
Q Consensus 16 H~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (166)
+-.=++++++.|.+.|+++ ++++...+.+... |+.+..+...- ++ ..+.+.+
T Consensus 10 ~K~~~~~~a~~l~~~G~~i--~AT~gTa~~L~~~---------Gi~~~~v~~~~-~~----------------g~~~i~~ 61 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPL--FATGGTSRVLADA---------GIPVRAVSKRH-ED----------------GEPTVDA 61 (112)
T ss_pred cHHHHHHHHHHHHHCCCEE--EECcHHHHHHHHc---------CCceEEEEecC-CC----------------CCcHHHH
Confidence 3455789999999999886 5666666666543 66665543211 10 1122333
Q ss_pred HHHHHhhcCC-CCccEEEe--cCcc--------chHHHHHHHhCCceEEE
Q 043556 96 LIEEINEKED-EKIDCFIA--DAYM--------GWTMRIAEKMKLRRGVV 134 (166)
Q Consensus 96 ll~~l~~~~~-~~~d~iI~--D~~~--------~~~~~vA~~l~iP~i~~ 134 (166)
+++ + .++|+||. |... ......|-++|||+++-
T Consensus 62 ~i~------~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T~ 105 (112)
T cd00532 62 AIA------EKGKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTTP 105 (112)
T ss_pred HHh------CCCCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEEC
Confidence 332 2 47898885 4222 12355799999999874
No 363
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=42.73 E-value=54 Score=25.89 Aligned_cols=39 Identities=23% Similarity=0.427 Sum_probs=29.1
Q ss_pred CEEEEEcCCC-CCChHHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 4 PHVLVIPAPA-QGHVIPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 4 ~~il~~~~p~-~GH~~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
.+|+++-... .|=....+.|.++|.+||.++.|+.+...
T Consensus 113 ~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaTGQT 152 (301)
T PF07755_consen 113 KRVLTVGTDCAVGKMTTALELRRALRERGINAGFVATGQT 152 (301)
T ss_dssp EEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-SHH
T ss_pred CEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEecCCc
Confidence 4555555544 49999999999999999999999999864
No 364
>PLN00016 RNA-binding protein; Provisional
Probab=42.73 E-value=43 Score=26.81 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=23.9
Q ss_pred CEEEEEc--CCCCCChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 4 PHVLVIP--APAQGHVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 4 ~~il~~~--~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
.+|+++. +++.|.+ =..|++.|.++||+|+.++-..
T Consensus 53 ~~VLVt~~~~GatG~i--G~~lv~~L~~~G~~V~~l~R~~ 90 (378)
T PLN00016 53 KKVLIVNTNSGGHAFI--GFYLAKELVKAGHEVTLFTRGK 90 (378)
T ss_pred ceEEEEeccCCCceeE--hHHHHHHHHHCCCEEEEEecCC
Confidence 4676661 1233333 2567899999999999988543
No 365
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=42.72 E-value=82 Score=22.75 Aligned_cols=57 Identities=14% Similarity=0.240 Sum_probs=42.3
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCC
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDG 68 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~ 68 (166)
.++|.+.-.|+.|-..-...++..|.++|++|-=+.++.....-.. .+|+.+.+..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR---------~GF~Ivdl~tg 61 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKR---------IGFKIVDLATG 61 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeE---------eeeEEEEccCC
Confidence 5799999999999999999999999999999984444433211111 36777777643
No 366
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=42.54 E-value=40 Score=26.27 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=25.4
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCC
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~ 40 (166)
+++|.++-.+..| ..+|+.|+++||+|++....
T Consensus 4 ~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWG-----STLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 5678888555544 47899999999999988754
No 367
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=42.37 E-value=69 Score=22.32 Aligned_cols=35 Identities=14% Similarity=0.329 Sum_probs=28.2
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCC
Q 043556 6 VLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 6 il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~ 40 (166)
+.++-..+.|=-.-+..|++.|..+|++|.++-..
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 34556677787788899999999999999998654
No 368
>PRK03094 hypothetical protein; Provisional
Probab=42.25 E-value=28 Score=21.72 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=16.9
Q ss_pred HHHHHHHHHHCCCEEEEEeCC
Q 043556 20 LLEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 20 ~l~la~~L~~rGh~Vt~~t~~ 40 (166)
+-.+...|.++|++|.=+.++
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~~ 30 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRSE 30 (80)
T ss_pred cHHHHHHHHHCCCEEEecCcc
Confidence 457889999999999876554
No 369
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=42.20 E-value=83 Score=22.89 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=19.7
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeC
Q 043556 6 VLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNS 39 (166)
Q Consensus 6 il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~ 39 (166)
|+|+..++.-|---+..++++|++.|.+|.+++-
T Consensus 111 vi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~ 144 (187)
T cd01452 111 VAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINF 144 (187)
T ss_pred EEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEe
Confidence 5555555555544455666666666666666554
No 370
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=42.20 E-value=45 Score=24.42 Aligned_cols=34 Identities=15% Similarity=0.222 Sum_probs=24.3
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
..+++++-.+..| ...++.|.++|++||++.+..
T Consensus 10 ~k~vLVIGgG~va-----~~ka~~Ll~~ga~V~VIs~~~ 43 (202)
T PRK06718 10 NKRVVIVGGGKVA-----GRRAITLLKYGAHIVVISPEL 43 (202)
T ss_pred CCEEEEECCCHHH-----HHHHHHHHHCCCeEEEEcCCC
Confidence 3566666544333 567889999999999998653
No 371
>PRK14974 cell division protein FtsY; Provisional
Probab=42.15 E-value=90 Score=24.98 Aligned_cols=38 Identities=11% Similarity=0.256 Sum_probs=33.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
-|+++-.+|.|=-.-...++..|.++|++|.+++...+
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 57788888899999999999999999999999887754
No 372
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=42.15 E-value=62 Score=22.79 Aligned_cols=32 Identities=13% Similarity=-0.078 Sum_probs=21.7
Q ss_pred CCccEEEecCccch-HHHHHHHhCCceEEEccc
Q 043556 106 EKIDCFIADAYMGW-TMRIAEKMKLRRGVVWPS 137 (166)
Q Consensus 106 ~~~d~iI~D~~~~~-~~~vA~~l~iP~i~~~~~ 137 (166)
-+||+||....... ...--++.|+|++.+...
T Consensus 59 l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~ 91 (195)
T cd01143 59 LKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAA 91 (195)
T ss_pred cCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCC
Confidence 47999997653322 345557789999887643
No 373
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=41.97 E-value=1e+02 Score=23.18 Aligned_cols=129 Identities=15% Similarity=0.149 Sum_probs=72.3
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHC-CCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCCCCCcCchhHHHHHHH
Q 043556 6 VLVIPAPAQGHVIPLLEFSQCLANH-GVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGMEPWEDRNELGNKLKK 84 (166)
Q Consensus 6 il~~~~p~~GH~~P~l~la~~L~~r-Gh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 84 (166)
+++...|+.|--.-+++++..++.+ |+.|.+++.+.....+...... ...++....+..+.-...+..........
T Consensus 22 ~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la---~~s~v~~~~i~~g~l~~~e~~~~~~~~~~ 98 (259)
T PF03796_consen 22 TVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLA---RLSGVPYNKIRSGDLSDEEFERLQAAAEK 98 (259)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHH---HHHTSTHHHHHCCGCHHHHHHHHHHHHHH
T ss_pred EEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHH---HhhcchhhhhhccccCHHHHHHHHHHHHH
Confidence 5667788899999999999999998 6999999998765554332110 00133322222110000000111111111
Q ss_pred HHh------h----ccHHHHHHHHHHhhcCCCCccEEEecCccc--h-----------------HHHHHHHhCCceEEEc
Q 043556 85 ILQ------V----MPGNLEELIEEINEKEDEKIDCFIADAYMG--W-----------------TMRIAEKMKLRRGVVW 135 (166)
Q Consensus 85 ~~~------~----~~~~~~~ll~~l~~~~~~~~d~iI~D~~~~--~-----------------~~~vA~~l~iP~i~~~ 135 (166)
+.+ . -...+++.++.+.... .++++||.|.+.. . ...+|.+++||++.+.
T Consensus 99 l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~-~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~~s 177 (259)
T PF03796_consen 99 LSDLPLYIEDTPSLTIDDIESKIRRLKREG-KKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKELNIPVIALS 177 (259)
T ss_dssp HHTSEEEEEESSS-BHHHHHHHHHHHHHHS-TTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHHTSEEEEEE
T ss_pred HhhCcEEEECCCCCCHHHHHHHHHHHHhhc-cCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHcCCeEEEcc
Confidence 111 0 1134555666655432 5789999996431 1 2457999999999976
Q ss_pred ccc
Q 043556 136 PSS 138 (166)
Q Consensus 136 ~~~ 138 (166)
-..
T Consensus 178 Qln 180 (259)
T PF03796_consen 178 QLN 180 (259)
T ss_dssp EBS
T ss_pred ccC
Confidence 544
No 374
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=41.90 E-value=72 Score=20.85 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=28.1
Q ss_pred EcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcch
Q 043556 9 IPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNH 43 (166)
Q Consensus 9 ~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~ 43 (166)
+...-.|.-.-+++.++.++++|..|..+|.....
T Consensus 52 i~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (128)
T cd05014 52 IAISNSGETDELLNLLPHLKRRGAPIIAITGNPNS 86 (128)
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 33345578888999999999999999999987644
No 375
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=41.82 E-value=1.2e+02 Score=21.38 Aligned_cols=92 Identities=17% Similarity=0.250 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHCCCEEEEEeCCcc-hhHHHhhhccCCCCCCCeeeeecCCCCCCCcCchhHHHHHHHHHhhccHHHHHHH
Q 043556 19 PLLEFSQCLANHGVRVTFVNSEYN-HQRVLKSLEGKNNLEEKIRLVSIPDGMEPWEDRNELGNKLKKILQVMPGNLEELI 97 (166)
Q Consensus 19 P~l~la~~L~~rGh~Vt~~t~~~~-~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 97 (166)
-+..|.+...++|.+|.++.+... .+.+..... ...|++++....++.-.. . ...+++
T Consensus 34 l~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~---~~yp~l~i~g~~~g~~~~------~------------~~~~i~ 92 (171)
T cd06533 34 LMPALLELAAQKGLRVFLLGAKPEVLEKAAERLR---ARYPGLKIVGYHHGYFGP------E------------EEEEII 92 (171)
T ss_pred HHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHH---HHCCCcEEEEecCCCCCh------h------------hHHHHH
Confidence 356677777788999999977543 222221110 112678876643332110 0 011144
Q ss_pred HHHhhcCCCCccEEEecCccc----hHHHHHHHhCCceEEE
Q 043556 98 EEINEKEDEKIDCFIADAYMG----WTMRIAEKMKLRRGVV 134 (166)
Q Consensus 98 ~~l~~~~~~~~d~iI~D~~~~----~~~~vA~~l~iP~i~~ 134 (166)
+.+.+ .++|+|+.-..++ |+....++++.+++.-
T Consensus 93 ~~I~~---~~pdiv~vglG~PkQE~~~~~~~~~l~~~v~~~ 130 (171)
T cd06533 93 ERINA---SGADILFVGLGAPKQELWIARHKDRLPVPVAIG 130 (171)
T ss_pred HHHHH---cCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEE
Confidence 45543 5789999988775 5566666675554443
No 376
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=41.76 E-value=28 Score=21.73 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=18.3
Q ss_pred HHHHHHHHHHCCCEEEEEeCCc
Q 043556 20 LLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 20 ~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
+-.+...|.++||+|+=+....
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~~~ 31 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLENEQ 31 (80)
T ss_pred chHHHHHHHHCCCEEEecCCcc
Confidence 4578899999999999877665
No 377
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=41.74 E-value=30 Score=27.08 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=17.9
Q ss_pred HHHHHHHHHCCCEEEEEeCCcc
Q 043556 21 LEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 21 l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
.+|+.+|.+.||+||+++=...
T Consensus 12 ~~L~~~L~~~gh~v~iltR~~~ 33 (297)
T COG1090 12 RALTARLRKGGHQVTILTRRPP 33 (297)
T ss_pred HHHHHHHHhCCCeEEEEEcCCc
Confidence 3678889999999999986543
No 378
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=41.47 E-value=71 Score=24.56 Aligned_cols=42 Identities=10% Similarity=0.018 Sum_probs=29.3
Q ss_pred CCCCEEEEEcCCCC-CChH---HHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 1 MSNPHVLVIPAPAQ-GHVI---PLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 1 ~~~~~il~~~~p~~-GH~~---P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
|.+.+|++++.+.. =|-. --..+.++|.++||+|.++.....
T Consensus 2 ~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~ 47 (304)
T PRK01372 2 KMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGED 47 (304)
T ss_pred CCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcc
Confidence 33568887773322 2333 568899999999999999876543
No 379
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=41.45 E-value=2.3e+02 Score=27.10 Aligned_cols=44 Identities=14% Similarity=0.080 Sum_probs=37.9
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHH
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRV 46 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~ 46 (166)
+.+|++.+.++-.|-.-..=++-.|.+.|++|..+...-..+.+
T Consensus 751 ~gkvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp~e~i 794 (1229)
T PRK09490 751 NGKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKI 794 (1229)
T ss_pred CCeEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCCCCHHHH
Confidence 47999999999999999999999999999999999876544444
No 380
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=41.33 E-value=73 Score=23.72 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=25.7
Q ss_pred CC-CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeC
Q 043556 1 MS-NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNS 39 (166)
Q Consensus 1 ~~-~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~ 39 (166)
|. +.+.++++.++.| + =..+++.|+++|++|.++.-
T Consensus 1 m~~~~k~vlItGas~g-I--G~~ia~~l~~~G~~V~~~~r 37 (262)
T TIGR03325 1 MRLKGEVVLVTGGASG-L--GRAIVDRFVAEGARVAVLDK 37 (262)
T ss_pred CCcCCcEEEEECCCCh-H--HHHHHHHHHHCCCEEEEEeC
Confidence 44 3467777776643 2 36788999999999987653
No 381
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=40.85 E-value=32 Score=26.68 Aligned_cols=27 Identities=22% Similarity=0.403 Sum_probs=24.2
Q ss_pred CChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 15 GHVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 15 GH~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
||+.+.+.....|++.|+++.++..+.
T Consensus 15 G~~~~al~~~~~lQ~ag~~~~~~IaD~ 41 (280)
T cd00806 15 GHYLGAFRFWVWLQEAGYELFFFIADL 41 (280)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEecch
Confidence 999999999999999999999987764
No 382
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=40.76 E-value=88 Score=22.69 Aligned_cols=39 Identities=13% Similarity=0.414 Sum_probs=29.6
Q ss_pred CEEEEEcC--CCCCChHHHHHHHHHHHH-CCCEEEEEeCCcc
Q 043556 4 PHVLVIPA--PAQGHVIPLLEFSQCLAN-HGVRVTFVNSEYN 42 (166)
Q Consensus 4 ~~il~~~~--p~~GH~~P~l~la~~L~~-rGh~Vt~~t~~~~ 42 (166)
.+++.++. +|.|=-.-...||+.|+. +|.+|.++=....
T Consensus 35 ~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~ 76 (207)
T TIGR03018 35 NNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLR 76 (207)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 45555554 667888889999999996 6999998865543
No 383
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=40.55 E-value=88 Score=22.89 Aligned_cols=35 Identities=20% Similarity=0.396 Sum_probs=31.2
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCC
Q 043556 6 VLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 6 il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~ 40 (166)
+.+.-.|+.|--.-.++++...+.+|.+|.++..+
T Consensus 26 ~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 26 TQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 46667788899999999999999999999999998
No 384
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=40.45 E-value=44 Score=27.48 Aligned_cols=28 Identities=14% Similarity=-0.012 Sum_probs=22.8
Q ss_pred CCccEEEecCccchHHHHHHHhCCceEEEcc
Q 043556 106 EKIDCFIADAYMGWTMRIAEKMKLRRGVVWP 136 (166)
Q Consensus 106 ~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~~ 136 (166)
.+||++|.... ...+|+++|||...+..
T Consensus 368 ~~pDliig~~~---~~~~a~k~giP~~~~~~ 395 (421)
T cd01976 368 LKPDLIGSGIK---EKYVFQKMGIPFRQMHS 395 (421)
T ss_pred hCCCEEEecCc---chhhhhhcCCCeEeCCc
Confidence 58999998775 66789999999987653
No 385
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=40.33 E-value=38 Score=23.12 Aligned_cols=30 Identities=17% Similarity=0.311 Sum_probs=25.8
Q ss_pred EEEcCCCCCChHHHHHHHHHHHHC-CCEEEE
Q 043556 7 LVIPAPAQGHVIPLLEFSQCLANH-GVRVTF 36 (166)
Q Consensus 7 l~~~~p~~GH~~P~l~la~~L~~r-Gh~Vt~ 36 (166)
+..+.-...|..-..+||..|.+. |.+|.+
T Consensus 5 I~Ys~d~~~h~~~V~~la~~L~~~~g~~V~l 35 (150)
T PF08357_consen 5 ISYSHDSEEHKEWVLALAEFLRQNCGIDVIL 35 (150)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHhccCCceee
Confidence 455666779999999999999999 999886
No 386
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=40.27 E-value=76 Score=21.72 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=26.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeC
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNS 39 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~ 39 (166)
.|.++-....|=-.-+..|...|.+||++|.++-.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 46677777778888899999999999999986543
No 387
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=40.14 E-value=1.5e+02 Score=21.81 Aligned_cols=40 Identities=18% Similarity=0.232 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCCCCh----HHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 3 NPHVLVIPAPAQGHV----IPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 3 ~~~il~~~~p~~GH~----~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
+.-|++.+..+...= .-+.+|++.|.++|.+|.++.+...
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~ 148 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEE 148 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHH
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchH
Confidence 356777776655222 2258999999999988877777665
No 388
>PRK09186 flagellin modification protein A; Provisional
Probab=39.97 E-value=76 Score=23.33 Aligned_cols=34 Identities=9% Similarity=0.021 Sum_probs=24.1
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeC
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNS 39 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~ 39 (166)
+.+.++++..+.| -=..+++.|+++|++|.++..
T Consensus 3 ~~k~vlItGas~g---iG~~~a~~l~~~g~~v~~~~r 36 (256)
T PRK09186 3 KGKTILITGAGGL---IGSALVKAILEAGGIVIAADI 36 (256)
T ss_pred CCCEEEEECCCch---HHHHHHHHHHHCCCEEEEEec
Confidence 4466667666532 335678999999999988754
No 389
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=39.96 E-value=91 Score=23.94 Aligned_cols=43 Identities=16% Similarity=0.228 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhcCCCCccEEEecCccc--hHHHHHHHhCCceEEEccc
Q 043556 92 NLEELIEEINEKEDEKIDCFIADAYMG--WTMRIAEKMKLRRGVVWPS 137 (166)
Q Consensus 92 ~~~~ll~~l~~~~~~~~d~iI~D~~~~--~~~~vA~~l~iP~i~~~~~ 137 (166)
.+.++.+.+++ .+..||+++.... .+..+|++.|++.+.+.+.
T Consensus 208 ~l~~l~~~ik~---~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~l 252 (282)
T cd01017 208 QLAELVEFVKK---SDVKYIFFEENASSKIAETLAKETGAKLLVLNPL 252 (282)
T ss_pred HHHHHHHHHHH---cCCCEEEEeCCCChHHHHHHHHHcCCcEEEeccc
Confidence 35666666654 5789999998765 3567999999999887653
No 390
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=39.96 E-value=30 Score=26.51 Aligned_cols=28 Identities=11% Similarity=-0.115 Sum_probs=23.1
Q ss_pred CChHHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 15 GHVIPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 15 GH~~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
|--.-+..++++|+++||+|++++....
T Consensus 16 G~~~~~~~l~~~L~~~~~~v~~~~~~~~ 43 (365)
T cd03809 16 GIGRYARELLRALLKLDPEEVLLLLPGA 43 (365)
T ss_pred cHHHHHHHHHHHHHhcCCceEEEEecCc
Confidence 4445679999999999999999987653
No 391
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=39.85 E-value=93 Score=20.23 Aligned_cols=33 Identities=9% Similarity=0.124 Sum_probs=26.2
Q ss_pred CCCCCChHHHHHHHHHHHHCCCEEEEEeCCcch
Q 043556 11 APAQGHVIPLLEFSQCLANHGVRVTFVNSEYNH 43 (166)
Q Consensus 11 ~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~ 43 (166)
....|.-.-+++.++.++++|..|..+|.....
T Consensus 53 iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~s 85 (126)
T cd05008 53 ISQSGETADTLAALRLAKEKGAKTVAITNVVGS 85 (126)
T ss_pred EeCCcCCHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 333466777999999999999999998887543
No 392
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=39.80 E-value=56 Score=25.57 Aligned_cols=32 Identities=22% Similarity=0.191 Sum_probs=24.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
+|.|+-.+..| .+.++.|.++||+|++..-..
T Consensus 2 kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~~ 33 (286)
T COG2084 2 KIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRTP 33 (286)
T ss_pred eEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCCh
Confidence 56666666555 478999999999999987543
No 393
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=39.79 E-value=2.1e+02 Score=23.36 Aligned_cols=64 Identities=23% Similarity=0.223 Sum_probs=42.7
Q ss_pred cHHHHHHHHHHhhcCCCCccEEEecCcc---c--hH-HHHHHHhCCceEEEccccHHHHHHHhccchhhhCCCc
Q 043556 90 PGNLEELIEEINEKEDEKIDCFIADAYM---G--WT-MRIAEKMKLRRGVVWPSSAASVALCFRIPKLIDDGII 157 (166)
Q Consensus 90 ~~~~~~ll~~l~~~~~~~~d~iI~D~~~---~--~~-~~vA~~l~iP~i~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (166)
.+.++.++++ .+.+.|.+|.-.-. . -. ..+++++++|.++..--+...+...+.+-+-.++|..
T Consensus 178 PPa~~~ll~~----~~~~idgfi~PGHVs~I~G~~~y~~l~~~y~~P~VVaGFEp~DiL~~i~~ll~qi~~g~~ 247 (369)
T TIGR00075 178 PPAVEALLEN----PAVQIDAFLAPGHVSTIIGAKPYAPIAEKYKIPIVIAGFEPVDILQAIYMLLKQAISGEA 247 (369)
T ss_pred HHHHHHHHcC----CCCCccEEEecCEEEEEeccchhHHHHHHcCCCeEEeccCHHHHHHHHHHHHHHHHCCCc
Confidence 3445555543 22468988855422 1 12 4589999999999999999887777776655555544
No 394
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=39.64 E-value=72 Score=23.90 Aligned_cols=34 Identities=18% Similarity=0.112 Sum_probs=25.0
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEe
Q 043556 4 PHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVN 38 (166)
Q Consensus 4 ~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t 38 (166)
.|+++++.++.|. --=..++++|+++|++|.+..
T Consensus 8 ~k~~lITGas~~~-GIG~a~a~~la~~G~~v~~~~ 41 (260)
T PRK06603 8 GKKGLITGIANNM-SISWAIAQLAKKHGAELWFTY 41 (260)
T ss_pred CcEEEEECCCCCc-chHHHHHHHHHHcCCEEEEEe
Confidence 4788899887631 023578899999999988764
No 395
>PRK12747 short chain dehydrogenase; Provisional
Probab=39.63 E-value=78 Score=23.32 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=25.0
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEe
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVN 38 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t 38 (166)
+.+.++++..+.| -=..++++|+++|++|.+..
T Consensus 3 ~~k~~lItGas~g---IG~~ia~~l~~~G~~v~~~~ 35 (252)
T PRK12747 3 KGKVALVTGASRG---IGRAIAKRLANDGALVAIHY 35 (252)
T ss_pred CCCEEEEeCCCCh---HHHHHHHHHHHCCCeEEEEc
Confidence 4467777776654 35678999999999998764
No 396
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=39.51 E-value=17 Score=21.98 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=12.6
Q ss_pred HHHHHHHHHHCCCEEEEEe
Q 043556 20 LLEFSQCLANHGVRVTFVN 38 (166)
Q Consensus 20 ~l~la~~L~~rGh~Vt~~t 38 (166)
--+|+..|.++|++||=.|
T Consensus 22 Q~eL~~~L~~~Gi~vTQaT 40 (70)
T PF01316_consen 22 QEELVELLEEEGIEVTQAT 40 (70)
T ss_dssp HHHHHHHHHHTT-T--HHH
T ss_pred HHHHHHHHHHcCCCcchhH
Confidence 4578999999999977544
No 397
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=39.33 E-value=1.1e+02 Score=22.53 Aligned_cols=32 Identities=13% Similarity=-0.022 Sum_probs=23.8
Q ss_pred CCccEEEecCccc----hHHHHHHHhCCceEEEccc
Q 043556 106 EKIDCFIADAYMG----WTMRIAEKMKLRRGVVWPS 137 (166)
Q Consensus 106 ~~~d~iI~D~~~~----~~~~vA~~l~iP~i~~~~~ 137 (166)
.++|.||..+... ....-+.+-|||++.+...
T Consensus 54 ~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 54 QGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp TTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESST
T ss_pred hcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEecc
Confidence 5799999776553 2345577789999998776
No 398
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=39.32 E-value=49 Score=25.97 Aligned_cols=34 Identities=26% Similarity=0.222 Sum_probs=26.3
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
.++|.++-.+..| ..++..|+++||+|+++....
T Consensus 4 ~m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 4 GMRVAVLGAGAWG-----TALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCCH
Confidence 3678888666655 467889999999999988753
No 399
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=39.09 E-value=61 Score=26.79 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCCCccEEEecCccchHHHHHHHhCCceEEEc
Q 043556 92 NLEELIEEINEKEDEKIDCFIADAYMGWTMRIAEKMKLRRGVVW 135 (166)
Q Consensus 92 ~~~~ll~~l~~~~~~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~ 135 (166)
.+++++++ .++|++|... ....+|+++|||.+-+.
T Consensus 364 ~l~~~i~~------~~~dliig~s---~~k~~A~~l~ip~ir~g 398 (432)
T TIGR01285 364 DLEDLACA------AGADLLITNS---HGRALAQRLALPLVRAG 398 (432)
T ss_pred HHHHHHhh------cCCCEEEECc---chHHHHHHcCCCEEEec
No 400
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=39.05 E-value=54 Score=25.19 Aligned_cols=58 Identities=21% Similarity=0.222 Sum_probs=33.9
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCCCC
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGMEP 71 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~ 71 (166)
|+||+++.+||. |-=.+++.+|...|.++..+...+..+.-. .. ..+....+|.++..
T Consensus 1 kpkV~Vl~~pGt---Nce~e~~~A~~~aG~~~~~v~~~dl~~~~~-~l-------~~~~~lvipGGFS~ 58 (259)
T PF13507_consen 1 KPKVAVLRFPGT---NCERETAAAFENAGFEPEIVHINDLLSGES-DL-------DDFDGLVIPGGFSY 58 (259)
T ss_dssp --EEEEEE-TTE---EEHHHHHHHHHCTT-EEEEEECCHHHTTS---G-------CC-SEEEE-EE-GG
T ss_pred CCEEEEEECCCC---CCHHHHHHHHHHcCCCceEEEEEecccccC-ch-------hhCcEEEECCccCc
Confidence 578999999995 334678889999999999987654322111 11 36777778766644
No 401
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=38.98 E-value=56 Score=26.64 Aligned_cols=31 Identities=32% Similarity=0.348 Sum_probs=23.3
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCC
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~ 40 (166)
+|.++-.+-.| ..+|..|+++||+|+.+-..
T Consensus 2 kI~vIGlG~~G-----~~lA~~La~~G~~V~~~d~~ 32 (411)
T TIGR03026 2 KIAVIGLGYVG-----LPLAALLADLGHEVTGVDID 32 (411)
T ss_pred EEEEECCCchh-----HHHHHHHHhcCCeEEEEECC
Confidence 57776544444 57889999999999988654
No 402
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=38.98 E-value=72 Score=24.31 Aligned_cols=34 Identities=18% Similarity=0.369 Sum_probs=24.7
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
..+|+++...+.| ..+++.|.++|+.|++.+...
T Consensus 2 ~~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~ 35 (248)
T PRK08057 2 MPRILLLGGTSEA-----RALARALAAAGVDIVLSLAGR 35 (248)
T ss_pred CceEEEEechHHH-----HHHHHHHHhCCCeEEEEEccC
Confidence 3567777666655 478999999999888765544
No 403
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=38.83 E-value=37 Score=27.17 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=23.5
Q ss_pred CCCCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeC
Q 043556 1 MSNPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNS 39 (166)
Q Consensus 1 ~~~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~ 39 (166)
|...+|+|+-.+--| +.+|..|+++|++|+++=.
T Consensus 1 ~~~~dv~IvGgG~aG-----l~~A~~L~~~G~~v~l~E~ 34 (384)
T PRK08849 1 MNKYDIAVVGGGMVG-----AATALGFAKQGRSVAVIEG 34 (384)
T ss_pred CCcccEEEECcCHHH-----HHHHHHHHhCCCcEEEEcC
Confidence 554566665444333 5677889999999999863
No 404
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=38.83 E-value=1.3e+02 Score=20.98 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=34.8
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHH
Q 043556 6 VLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVL 47 (166)
Q Consensus 6 il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~ 47 (166)
+++.-.||.|=-.-.++++...++.|..|.+++.+.....+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~ 43 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELI 43 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHH
Confidence 466677888988999999999999999999999987665543
No 405
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=38.81 E-value=1.7e+02 Score=21.98 Aligned_cols=117 Identities=18% Similarity=0.203 Sum_probs=63.8
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecCCCCCCCcCchhHHHHHH
Q 043556 4 PHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIPDGMEPWEDRNELGNKLK 83 (166)
Q Consensus 4 ~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 83 (166)
.=|++|-.||.|=-.-...|++-|...|++..++............. ....| +.+ .........+
T Consensus 13 l~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~-------~~~~f------f~p--~n~~~~~~R~ 77 (222)
T PF01591_consen 13 LVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAP-------QDAEF------FDP--DNEEAKKLRE 77 (222)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS--------S-GGG------GST--T-HHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccc-------ccccc------CCC--CChHHHHHHH
Confidence 34788999999999999999999999999999998776655543210 01111 111 1111111222
Q ss_pred HHHhhccHHHHHHHHHHhhcCCCCccEEEecCccc------hHHHHHHHhCCceEEEccccHHH
Q 043556 84 KILQVMPGNLEELIEEINEKEDEKIDCFIADAYMG------WTMRIAEKMKLRRGVVWPSSAAS 141 (166)
Q Consensus 84 ~~~~~~~~~~~~ll~~l~~~~~~~~d~iI~D~~~~------~~~~vA~~l~iP~i~~~~~~~~~ 141 (166)
.+ ....++++++-+.+ ..-++-|+|...+ +......+.|+.++.+=+..-..
T Consensus 78 ~~---a~~~l~dl~~~l~~---~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~ 135 (222)
T PF01591_consen 78 QI---AKEALEDLIEWLQE---EGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDP 135 (222)
T ss_dssp HH---HHHHHHHHHHHHHT---S--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---H
T ss_pred HH---HHHHHHHHHHHHhc---CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCH
Confidence 22 22345666666653 3458999998764 34455667777666655444433
No 406
>PF07881 Fucose_iso_N1: L-fucose isomerase, first N-terminal domain; InterPro: IPR012888 Proteins containing this domain are similar to L-fucose isomerase expressed by Escherichia coli (P11552 from SWISSPROT, 5.3.1.3 from EC). This enzyme corresponds to glucose-6-phosphate isomerase in glycolysis, and converts an aldo-hexose to a ketose to prepare it for aldol cleavage. The enzyme is a hexamer, with each subunit being wedge-shaped and composed of three domains. Both domains 1 and 2 contain central parallel beta-sheets with surrounding alpha helices. Domain 1 demonstrates the beta-alpha-beta-alpha- beta Rossman fold. The active centre is shared between pairs of subunits related along the molecular three-fold axis, with domains 2 and 3 from one subunit providing most of the substrate-contacting residues, and domain 1 from the adjacent subunit contributing some other residues []. ; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 3A9R_A 3A9T_C 3A9S_C 1FUI_E.
Probab=38.80 E-value=1.5e+02 Score=21.36 Aligned_cols=71 Identities=27% Similarity=0.279 Sum_probs=31.3
Q ss_pred CCeeeeecCCCCCCCcCchhHHHHHHHHHhhccHHHHHHHHHHhhcC-CCCccEEEecCccc---hHHHHHHHhCCceEE
Q 043556 58 EKIRLVSIPDGMEPWEDRNELGNKLKKILQVMPGNLEELIEEINEKE-DEKIDCFIADAYMG---WTMRIAEKMKLRRGV 133 (166)
Q Consensus 58 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~d~iI~D~~~~---~~~~vA~~l~iP~i~ 133 (166)
|.|-+.++.|+...+ ..+.++.....+...+.+++++-.+.. ..++.|||.|.... .+...+++|.---+.
T Consensus 4 pkIGIrp~iDGR~~g-----VresLe~~tm~ma~~~a~ll~~~l~~~~G~~Ve~Viad~~Iggv~eAa~~ae~f~~~~V~ 78 (171)
T PF07881_consen 4 PKIGIRPTIDGRRGG-----VRESLEEQTMNMAKAVAELLEENLRYPDGSPVECVIADTTIGGVAEAAACAEKFKREGVG 78 (171)
T ss_dssp -EEEEEEB----TTT-----HHHHHHHHHHHHHHHHHHHHHHH-B-TTS-B--EEE-SS-B-SHHHHHHHHHHHHCCTEE
T ss_pred CeEEEEEeecCCchh-----HHHHHHHHHHHHHHHHHHHHHHhcccCCCCeeEEEECCCcccCHHHHHHHHHHHHHcCCC
Confidence 456666776665332 333333333334445555565532111 25779999998764 356678887654443
No 407
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=38.72 E-value=82 Score=23.64 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=30.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
.|+++.=+|.|=-.-...||..|+++|++|-++=.+.
T Consensus 3 ~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dp 39 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDP 39 (270)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 4666666667888999999999999999999885443
No 408
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=38.54 E-value=1.2e+02 Score=24.47 Aligned_cols=43 Identities=12% Similarity=0.261 Sum_probs=37.5
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHH
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVL 47 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~ 47 (166)
-|+++-.-|.|-....-.||+.|.+.|++|.+...+-++..+.
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAi 183 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAI 183 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHH
Confidence 4778888899999999999999999999999999987765543
No 409
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=38.54 E-value=53 Score=23.99 Aligned_cols=30 Identities=17% Similarity=0.278 Sum_probs=22.0
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEe
Q 043556 4 PHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVN 38 (166)
Q Consensus 4 ~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t 38 (166)
.+++++-++..| ..+++.|.+.|++|++.-
T Consensus 29 k~v~I~G~G~vG-----~~~A~~L~~~G~~Vvv~D 58 (200)
T cd01075 29 KTVAVQGLGKVG-----YKLAEHLLEEGAKLIVAD 58 (200)
T ss_pred CEEEEECCCHHH-----HHHHHHHHHCCCEEEEEc
Confidence 567766665433 578999999999999543
No 410
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=38.48 E-value=54 Score=27.47 Aligned_cols=33 Identities=36% Similarity=0.450 Sum_probs=22.9
Q ss_pred CCCCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEe
Q 043556 1 MSNPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVN 38 (166)
Q Consensus 1 ~~~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t 38 (166)
|...++++|=.+--| |.-|..|+++|++|+++=
T Consensus 1 ~~~~dvvVIGaG~~G-----L~aAa~LA~~G~~V~VlE 33 (487)
T COG1233 1 MPMYDVVVIGAGLNG-----LAAAALLARAGLKVTVLE 33 (487)
T ss_pred CCCccEEEECCChhH-----HHHHHHHHhCCCEEEEEE
Confidence 455666666443322 556788999999999974
No 411
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=38.46 E-value=83 Score=23.78 Aligned_cols=36 Identities=17% Similarity=0.186 Sum_probs=28.1
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCC
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~ 40 (166)
.|.+.-=+|.|--.-...||..|+++|++|-++=.+
T Consensus 4 iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~D 39 (270)
T PRK13185 4 VLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCD 39 (270)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 344444566688899999999999999999887443
No 412
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=38.43 E-value=44 Score=27.36 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=25.9
Q ss_pred CCCCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeC
Q 043556 1 MSNPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNS 39 (166)
Q Consensus 1 ~~~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~ 39 (166)
|++..|+++=.+.-| +..|..|+++|++|+++=-
T Consensus 1 ~~~~dvvVIG~GpaG-----~~aA~~l~~~g~~V~liE~ 34 (438)
T PRK07251 1 MLTYDLIVIGFGKAG-----KTLAAKLASAGKKVALVEE 34 (438)
T ss_pred CCccCEEEECCCHHH-----HHHHHHHHhCCCEEEEEec
Confidence 555677777666556 6778899999999999853
No 413
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=38.21 E-value=55 Score=22.19 Aligned_cols=25 Identities=12% Similarity=0.154 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHCCCEEEEEeCCcch
Q 043556 19 PLLEFSQCLANHGVRVTFVNSEYNH 43 (166)
Q Consensus 19 P~l~la~~L~~rGh~Vt~~t~~~~~ 43 (166)
...+..++|.++||.|.++|+....
T Consensus 28 ~~ie~L~~l~~~G~~IiiaTGR~~~ 52 (126)
T TIGR01689 28 AVIEKLRHYKALGFEIVISSSRNMR 52 (126)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCch
Confidence 5566677778999999999987653
No 414
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=38.15 E-value=66 Score=23.52 Aligned_cols=38 Identities=18% Similarity=0.331 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHCCCEEEEEeCCcchhHHHhhhccCCCCCCCeeeeecC
Q 043556 18 IPLLEFSQCLANHGVRVTFVNSEYNHQRVLKSLEGKNNLEEKIRLVSIP 66 (166)
Q Consensus 18 ~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 66 (166)
.-+.++++.|.+.|+++ +++....+.++.. |+.+..+.
T Consensus 11 ~~l~~lAk~L~~lGf~I--~AT~GTAk~L~e~---------GI~v~~V~ 48 (187)
T cd01421 11 TGLVEFAKELVELGVEI--LSTGGTAKFLKEA---------GIPVTDVS 48 (187)
T ss_pred ccHHHHHHHHHHCCCEE--EEccHHHHHHHHc---------CCeEEEhh
Confidence 34678999999999886 5777677676653 66665554
No 415
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=38.05 E-value=75 Score=26.21 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=21.1
Q ss_pred CCccEEEecCccchHHHHHHHhCCceEEEc
Q 043556 106 EKIDCFIADAYMGWTMRIAEKMKLRRGVVW 135 (166)
Q Consensus 106 ~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~ 135 (166)
.++|++|.... ...+|+++|||++.+.
T Consensus 376 ~~pDliiG~s~---~~~~a~~~gip~v~~~ 402 (435)
T cd01974 376 EPVDLLIGNTY---GKYIARDTDIPLVRFG 402 (435)
T ss_pred cCCCEEEECcc---HHHHHHHhCCCEEEee
Confidence 46888887653 6789999999998654
No 416
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]
Probab=38.00 E-value=44 Score=27.69 Aligned_cols=26 Identities=15% Similarity=0.346 Sum_probs=23.0
Q ss_pred ChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 16 HVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 16 H~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
|+.-|.+++.+|..+|++|++...+.
T Consensus 51 v~aAMR~Fad~LraeG~~V~Y~~~~~ 76 (505)
T COG3046 51 VFAAMRHFADELRAEGLKVRYERADD 76 (505)
T ss_pred HHHHHHHHHHHHhhCCceeEEEEcCC
Confidence 35789999999999999999998776
No 417
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=37.94 E-value=49 Score=24.59 Aligned_cols=40 Identities=10% Similarity=0.372 Sum_probs=30.0
Q ss_pred ccHHHHHHHHHHhhcCCCCccEEE-ecCccchHHHHHHHhCCce
Q 043556 89 MPGNLEELIEEINEKEDEKIDCFI-ADAYMGWTMRIAEKMKLRR 131 (166)
Q Consensus 89 ~~~~~~~ll~~l~~~~~~~~d~iI-~D~~~~~~~~vA~~l~iP~ 131 (166)
..+.++++...+.+ ...++.+ +..|-..+..+|++||||.
T Consensus 89 lT~Gi~eLv~~L~~---~~~~v~liSGGF~~~i~~Va~~Lgi~~ 129 (227)
T KOG1615|consen 89 LTPGIRELVSRLHA---RGTQVYLISGGFRQLIEPVAEQLGIPK 129 (227)
T ss_pred cCCCHHHHHHHHHH---cCCeEEEEcCChHHHHHHHHHHhCCcH
Confidence 44567888888876 4566655 5556677889999999998
No 418
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=37.92 E-value=64 Score=27.44 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=20.8
Q ss_pred CCccEEEecCccchHHHHHHHhCCceEEEc
Q 043556 106 EKIDCFIADAYMGWTMRIAEKMKLRRGVVW 135 (166)
Q Consensus 106 ~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~ 135 (166)
.++|++|.+. .+..+|+++|||.+.+.
T Consensus 436 ~~~DlliG~s---~~k~~a~~~giPlir~g 462 (515)
T TIGR01286 436 EPVDFLIGNS---YGKYIQRDTLVPLIRIG 462 (515)
T ss_pred cCCCEEEECc---hHHHHHHHcCCCEEEec
Confidence 4688888665 46789999999997553
No 419
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=37.84 E-value=83 Score=21.19 Aligned_cols=35 Identities=14% Similarity=0.146 Sum_probs=29.0
Q ss_pred EEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 7 LVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 7 l~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
+|++..+.|=..-...+.+.|.++|.+|-++=+..
T Consensus 3 ~~~~~~~~Gkt~~~~~l~~~l~~~~~~v~~~kp~~ 37 (134)
T cd03109 3 GFGTGTDIGKTVATAILARALKEKGYRVAPLKPVQ 37 (134)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 46667777888889999999999999999875543
No 420
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=37.84 E-value=1.2e+02 Score=23.48 Aligned_cols=39 Identities=10% Similarity=0.277 Sum_probs=31.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHC-C-CEEEEEeCCcch
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANH-G-VRVTFVNSEYNH 43 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~r-G-h~Vt~~t~~~~~ 43 (166)
-++++-..|.|=..-...|+..++.+ | ++|.+++.+.+.
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 45666667779999999999999987 5 999999988754
No 421
>PRK08309 short chain dehydrogenase; Provisional
Probab=37.83 E-value=75 Score=22.71 Aligned_cols=34 Identities=15% Similarity=-0.097 Sum_probs=23.6
Q ss_pred CCccEEEecCccc---hHHHHHHHhCCc-----eEEEccccH
Q 043556 106 EKIDCFIADAYMG---WTMRIAEKMKLR-----RGVVWPSSA 139 (166)
Q Consensus 106 ~~~d~iI~D~~~~---~~~~vA~~l~iP-----~i~~~~~~~ 139 (166)
.++|.++.-.-.. ....++++.|+. .+.++.+.+
T Consensus 74 g~id~lv~~vh~~~~~~~~~~~~~~gv~~~~~~~~h~~gs~~ 115 (177)
T PRK08309 74 GPFDLAVAWIHSSAKDALSVVCRELDGSSETYRLFHVLGSAA 115 (177)
T ss_pred CCCeEEEEeccccchhhHHHHHHHHccCCCCceEEEEeCCcC
Confidence 3678888665432 356789999999 777776665
No 422
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=37.82 E-value=1.6e+02 Score=21.76 Aligned_cols=44 Identities=18% Similarity=0.261 Sum_probs=35.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHHh
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVLK 48 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~~ 48 (166)
-+++.-.|+.|--.-..+++...+.+|.+|.+++.+.....+.+
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~ 70 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLK 70 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHH
Confidence 35666778889999999999888889999999999876555433
No 423
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=37.81 E-value=60 Score=25.21 Aligned_cols=38 Identities=13% Similarity=0.250 Sum_probs=24.4
Q ss_pred EEEEEcCCCCCCh---HHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 5 HVLVIPAPAQGHV---IPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 5 ~il~~~~p~~GH~---~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
|..|++.+-.|-+ .-.-.+++.|.+||++||.+--+++
T Consensus 2 KyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DPY 42 (276)
T PF06418_consen 2 KYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDPY 42 (276)
T ss_dssp EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-S
T ss_pred cEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeeccc
Confidence 4556665544333 6677899999999999999865554
No 424
>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=37.81 E-value=91 Score=22.86 Aligned_cols=36 Identities=19% Similarity=0.287 Sum_probs=27.5
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
+.++++++..+.| ==..+|++|+++|++|+++....
T Consensus 4 ~~~~ilITGas~G---iG~aia~~l~~~G~~v~~~~~~~ 39 (251)
T COG1028 4 SGKVALVTGASSG---IGRAIARALAREGARVVVAARRS 39 (251)
T ss_pred CCCEEEEeCCCCH---HHHHHHHHHHHCCCeEEEEcCCC
Confidence 4577788887763 34678899999999988877654
No 425
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=37.78 E-value=73 Score=22.74 Aligned_cols=44 Identities=11% Similarity=0.212 Sum_probs=32.4
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHH
Q 043556 4 PHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVL 47 (166)
Q Consensus 4 ~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~ 47 (166)
..+++.-.+|.|=-.-...+++++..+|+.|.|++.......+.
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~ 91 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK 91 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence 46777778888877778889999999999999988776555543
No 426
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=37.42 E-value=30 Score=28.26 Aligned_cols=27 Identities=33% Similarity=0.535 Sum_probs=21.7
Q ss_pred CChHHHH---HHHHHHHHCCCEEEEEeCCc
Q 043556 15 GHVIPLL---EFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 15 GH~~P~l---~la~~L~~rGh~Vt~~t~~~ 41 (166)
||+.|++ -+++-+..+|++|.++++.+
T Consensus 17 GH~~~~l~ADv~aR~~r~~G~~v~~~tGtD 46 (391)
T PF09334_consen 17 GHLYPYLAADVLARYLRLRGHDVLFVTGTD 46 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EEEEEEEEE
T ss_pred ChhHHHHHHHHHHHHHhhcccceeeEEecc
Confidence 9998776 57888889999999998754
No 427
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=37.41 E-value=40 Score=25.65 Aligned_cols=34 Identities=32% Similarity=0.491 Sum_probs=26.8
Q ss_pred CEEEEEcCCCC--CChHHHHHHHHHHHHCCCEEEEEeCC
Q 043556 4 PHVLVIPAPAQ--GHVIPLLEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 4 ~~il~~~~p~~--GH~~P~l~la~~L~~rGh~Vt~~t~~ 40 (166)
.+|++++.++- |+ -+-+|+.|+++|++|+++...
T Consensus 61 ~~V~VlcG~GNNGGD---Glv~AR~L~~~G~~V~v~~~~ 96 (246)
T PLN03050 61 PRVLLVCGPGNNGGD---GLVAARHLAHFGYEVTVCYPK 96 (246)
T ss_pred CeEEEEECCCCCchh---HHHHHHHHHHCCCeEEEEEcC
Confidence 47888888874 44 356889999999999998743
No 428
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=37.24 E-value=97 Score=22.54 Aligned_cols=31 Identities=13% Similarity=0.085 Sum_probs=23.5
Q ss_pred CCccEEE-ecC-ccchHHHHHHHhCCceEEEcc
Q 043556 106 EKIDCFI-ADA-YMGWTMRIAEKMKLRRGVVWP 136 (166)
Q Consensus 106 ~~~d~iI-~D~-~~~~~~~vA~~l~iP~i~~~~ 136 (166)
.++|+|+ .+. ....+..+|+.+|+|.+...-
T Consensus 63 ~~~d~Ivgi~~gG~~~A~~la~~L~~~~~~~rk 95 (202)
T PRK00455 63 IEFDVVAGPATGGIPLAAAVARALDLPAIFVRK 95 (202)
T ss_pred CCCCEEEecccCcHHHHHHHHHHhCCCEEEEec
Confidence 3789888 333 446788999999999988654
No 429
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=37.21 E-value=77 Score=24.90 Aligned_cols=19 Identities=21% Similarity=-0.031 Sum_probs=16.4
Q ss_pred HHHHHHHHHCCCEEEEEeC
Q 043556 21 LEFSQCLANHGVRVTFVNS 39 (166)
Q Consensus 21 l~la~~L~~rGh~Vt~~t~ 39 (166)
..+++.|.++||+|+.+.-
T Consensus 18 ~~l~~~L~~~G~~V~~~~r 36 (349)
T TIGR02622 18 SWLSLWLLELGAEVYGYSL 36 (349)
T ss_pred HHHHHHHHHCCCEEEEEeC
Confidence 6789999999999987753
No 430
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=37.15 E-value=1.7e+02 Score=21.66 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=31.7
Q ss_pred CCEEEEEcCCC-CCChHHHHHHHHHHHHCCCEEEEEeCCcch
Q 043556 3 NPHVLVIPAPA-QGHVIPLLEFSQCLANHGVRVTFVNSEYNH 43 (166)
Q Consensus 3 ~~~il~~~~p~-~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~ 43 (166)
+.++-++..|- .|--.-+++-++....+|-+|.+.++.-..
T Consensus 3 ~g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~ 44 (201)
T COG1435 3 MGWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAIDT 44 (201)
T ss_pred eEEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 34555555555 488889999999999999999999887543
No 431
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=37.13 E-value=57 Score=26.50 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=26.0
Q ss_pred CCCCChHHHHHHHHHHHH-CCCEEEEEeCCc
Q 043556 12 PAQGHVIPLLEFSQCLAN-HGVRVTFVNSEY 41 (166)
Q Consensus 12 p~~GH~~P~l~la~~L~~-rGh~Vt~~t~~~ 41 (166)
--.|++--+-+||+.|++ +|++|++-+.+.
T Consensus 9 DNyGDIGV~WRLArqLa~e~g~~VrLwvDdl 39 (371)
T TIGR03837 9 DNYGDIGVCWRLARQLAAEHGHQVRLWVDDL 39 (371)
T ss_pred cCCcchHHHHHHHHHHHHHhCCEEEEEECCH
Confidence 346999999999999997 799999988764
No 432
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=37.11 E-value=71 Score=24.18 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=32.6
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHHH
Q 043556 6 VLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRVL 47 (166)
Q Consensus 6 il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~~ 47 (166)
+++..-+|.|--.....+|..++++|.+|-++..+.. ..+.
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~-~sl~ 43 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA-HSLS 43 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc-ccHH
Confidence 3444567789999999999999999999999988764 3443
No 433
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=36.99 E-value=96 Score=22.94 Aligned_cols=45 Identities=7% Similarity=-0.047 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhcC-CCCccEEEecCccchHHHHHHHhCCceEEEcc
Q 043556 92 NLEELIEEINEKE-DEKIDCFIADAYMGWTMRIAEKMKLRRGVVWP 136 (166)
Q Consensus 92 ~~~~ll~~l~~~~-~~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~~ 136 (166)
.++.+++.+.+.. .-..-+||+|--.-.+...|+++|||+..+..
T Consensus 12 n~~al~~~~~~~~l~~~i~~visn~~~~~~~~~A~~~gIp~~~~~~ 57 (207)
T PLN02331 12 NFRAIHDACLDGRVNGDVVVVVTNKPGCGGAEYARENGIPVLVYPK 57 (207)
T ss_pred hHHHHHHHHHcCCCCeEEEEEEEeCCCChHHHHHHHhCCCEEEecc
Confidence 4666776654321 12456778885444578899999999987543
No 434
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=36.89 E-value=87 Score=20.39 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=26.1
Q ss_pred EcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 9 IPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 9 ~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
+-+...|+--.++++++.+.++|.++.++|....
T Consensus 65 i~iS~~g~~~~~~~~~~~a~~~g~~iv~iT~~~~ 98 (139)
T cd05013 65 IAISFSGETKETVEAAEIAKERGAKVIAITDSAN 98 (139)
T ss_pred EEEeCCCCCHHHHHHHHHHHHcCCeEEEEcCCCC
Confidence 3334446667889999999999999988888654
No 435
>PRK10125 putative glycosyl transferase; Provisional
Probab=36.83 E-value=69 Score=26.08 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=27.2
Q ss_pred EEEEEc--CCCCCChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 5 HVLVIP--APAQGHVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 5 ~il~~~--~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
||+.+- ....|-=.-+++|++.|.++||+|.++....
T Consensus 2 kil~i~~~l~~GGaeri~~~L~~~l~~~G~~~~i~~~~~ 40 (405)
T PRK10125 2 NILQFNVRLAEGGAAGVALDLHQRALQQGLASHFVYGYG 40 (405)
T ss_pred eEEEEEeeecCCchhHHHHHHHHHHHhcCCeEEEEEecC
Confidence 444443 2334666778999999999999999987654
No 436
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=36.71 E-value=37 Score=26.48 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=27.0
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCC
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~ 40 (166)
++||+++-.++.|=+ +|..|++.|++||++.-.
T Consensus 2 ~m~I~IiGaGaiG~~-----~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSL-----WACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHH-----HHHHHHhCCCCeEEEEec
Confidence 568999988888754 566788999999999875
No 437
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=36.68 E-value=1.1e+02 Score=25.17 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=31.9
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchh
Q 043556 6 VLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQ 44 (166)
Q Consensus 6 il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~ 44 (166)
++++-..|.|=-..+..||..+..+|++|.+++.+.+..
T Consensus 209 i~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 209 ISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 445555677888999999999999999999999987643
No 438
>PRK06835 DNA replication protein DnaC; Validated
Probab=36.54 E-value=79 Score=25.19 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=32.6
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHH
Q 043556 4 PHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRV 46 (166)
Q Consensus 4 ~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~ 46 (166)
..++++-.+|.|=..=...+|++|.++|+.|.+++.......+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l 226 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL 226 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence 4566776777777777788999999999999998876654443
No 439
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=36.51 E-value=67 Score=25.72 Aligned_cols=35 Identities=3% Similarity=-0.057 Sum_probs=29.8
Q ss_pred CCccEEEecCccc-hHHHHHHHhCCceEEEccccHH
Q 043556 106 EKIDCFIADAYMG-WTMRIAEKMKLRRGVVWPSSAA 140 (166)
Q Consensus 106 ~~~d~iI~D~~~~-~~~~vA~~l~iP~i~~~~~~~~ 140 (166)
...++|+.+..-. -+..+.+++.||.|.+...+.|
T Consensus 194 AGAf~ivLE~Vp~~la~~It~~l~IPtIGIGAG~~c 229 (332)
T PLN02424 194 AGCFAVVLECVPAPVAAAITSALQIPTIGIGAGPFC 229 (332)
T ss_pred cCCcEEEEcCCcHHHHHHHHHhCCCCEEeecCCCCC
Confidence 4789999998775 4788999999999999887765
No 440
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=36.33 E-value=83 Score=22.76 Aligned_cols=32 Identities=19% Similarity=0.157 Sum_probs=22.3
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEE
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTF 36 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~ 36 (166)
..+++-....|-..-+..+|..|+++|+.|.+
T Consensus 15 ~~Vvv~~d~~G~~~~~~~~ad~lA~~Gy~v~~ 46 (218)
T PF01738_consen 15 PAVVVIHDIFGLNPNIRDLADRLAEEGYVVLA 46 (218)
T ss_dssp EEEEEE-BTTBS-HHHHHHHHHHHHTT-EEEE
T ss_pred CEEEEEcCCCCCchHHHHHHHHHHhcCCCEEe
Confidence 34455556678888888999999999977655
No 441
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=36.31 E-value=42 Score=27.59 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=23.8
Q ss_pred EEEcCCC---CCChHHHHHHHHHHHHCCCEEEEEeCC
Q 043556 7 LVIPAPA---QGHVIPLLEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 7 l~~~~p~---~GH~~P~l~la~~L~~rGh~Vt~~t~~ 40 (166)
.+=|++. -||+.| +...+.|++.||++.++...
T Consensus 39 G~dPTg~slHlGhlv~-l~~l~~lQ~~G~~~~~ligd 74 (408)
T PRK05912 39 GFDPTAPSLHLGHLVP-LLKLRRFQDAGHKPIALIGG 74 (408)
T ss_pred eecCCCCCccHHhHHH-HHHHHHHHHCCCcEEEEEcC
Confidence 4445542 399998 45667889999999988643
No 442
>PRK12458 glutathione synthetase; Provisional
Probab=36.22 E-value=48 Score=26.38 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=22.4
Q ss_pred ChHHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 16 HVIPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 16 H~~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
......+|.++.++|||+|.++.+...
T Consensus 9 ~~~st~~l~~~a~~rgh~~~~~~~~~l 35 (338)
T PRK12458 9 ETDTTLRLAHEAVNRGHEVAYTTPGDL 35 (338)
T ss_pred CCchHHHHHHHHHHcCCEEEEEecCcE
Confidence 345678899999999999999988764
No 443
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=36.20 E-value=67 Score=22.60 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=21.7
Q ss_pred EEEEEcCC--CCCChHHHHHHHHHHHHCCCEEEEEeC
Q 043556 5 HVLVIPAP--AQGHVIPLLEFSQCLANHGVRVTFVNS 39 (166)
Q Consensus 5 ~il~~~~p--~~GH~~P~l~la~~L~~rGh~Vt~~t~ 39 (166)
+|.++... ..-+..-..+|++.|+++|+. +++.
T Consensus 3 ~I~V~gss~~~~~~~~~A~~lg~~La~~g~~--lv~G 37 (159)
T TIGR00725 3 QIGVIGSSNKSEELYEIAYRLGKELAKKGHI--LING 37 (159)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHCCCE--EEcC
Confidence 56666554 334455677899999999984 4443
No 444
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=36.19 E-value=80 Score=22.72 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=22.8
Q ss_pred EEEEEcCCCC----CChHHHHHHHHHHHHCCCEEEE
Q 043556 5 HVLVIPAPAQ----GHVIPLLEFSQCLANHGVRVTF 36 (166)
Q Consensus 5 ~il~~~~p~~----GH~~P~l~la~~L~~rGh~Vt~ 36 (166)
+|.++..... .+..-..+|++.|+++||.+..
T Consensus 2 ~i~V~~~s~~~~~~~~~~~A~~lG~~la~~g~~lV~ 37 (178)
T TIGR00730 2 TVCVYCGSSPGGNAAYKELAAELGAYLAGQGWGLVY 37 (178)
T ss_pred EEEEECcCCCCCCcHHHHHHHHHHHHHHHCCCEEEE
Confidence 5677776543 4556778899999999977543
No 445
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=36.10 E-value=82 Score=26.76 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=27.7
Q ss_pred EEEEEcCCCC---CChHHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 5 HVLVIPAPAQ---GHVIPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 5 ~il~~~~p~~---GH~~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
+..|++.+-. |-=...-.+++.|.+||++||.+=-+++
T Consensus 2 KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPY 42 (533)
T COG0504 2 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPY 42 (533)
T ss_pred eEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEEecccc
Confidence 4556665543 3336777899999999999999876654
No 446
>PRK12829 short chain dehydrogenase; Provisional
Probab=36.08 E-value=91 Score=22.99 Aligned_cols=31 Identities=16% Similarity=0.307 Sum_probs=21.5
Q ss_pred EEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCC
Q 043556 7 LVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 7 l~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~ 40 (166)
++++.++ |.+ -..+++.|+++|++|+.+.-.
T Consensus 14 vlItGa~-g~i--G~~~a~~L~~~g~~V~~~~r~ 44 (264)
T PRK12829 14 VLVTGGA-SGI--GRAIAEAFAEAGARVHVCDVS 44 (264)
T ss_pred EEEeCCC-CcH--HHHHHHHHHHCCCEEEEEeCC
Confidence 3444433 555 377899999999999877643
No 447
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=35.92 E-value=1.1e+02 Score=22.09 Aligned_cols=44 Identities=18% Similarity=0.141 Sum_probs=31.2
Q ss_pred ccHHHHHHHHHHhhcCCCCccEEEecCccc-hHHHHHHHhCCceEEEc
Q 043556 89 MPGNLEELIEEINEKEDEKIDCFIADAYMG-WTMRIAEKMKLRRGVVW 135 (166)
Q Consensus 89 ~~~~~~~ll~~l~~~~~~~~d~iI~D~~~~-~~~~vA~~l~iP~i~~~ 135 (166)
..+.+++++.++.+ ...-++|..-..- =...+++++|+|+|.=-
T Consensus 47 ~tpe~~~W~~e~k~---~gi~v~vvSNn~e~RV~~~~~~l~v~fi~~A 91 (175)
T COG2179 47 ATPELRAWLAELKE---AGIKVVVVSNNKESRVARAAEKLGVPFIYRA 91 (175)
T ss_pred CCHHHHHHHHHHHh---cCCEEEEEeCCCHHHHHhhhhhcCCceeecc
Confidence 45678888888775 3567777655443 36778999999999743
No 448
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=35.90 E-value=58 Score=24.70 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=23.7
Q ss_pred ChHHHHHHHHHHHHCC--CEEEEEeCCcc
Q 043556 16 HVIPLLEFSQCLANHG--VRVTFVNSEYN 42 (166)
Q Consensus 16 H~~P~l~la~~L~~rG--h~Vt~~t~~~~ 42 (166)
=+.|+.++++++.++| .+|+++.....
T Consensus 118 G~aPl~~i~~~~~~~~~~~~V~~~~G~~~ 146 (252)
T COG0543 118 GIAPLYAIAKELKEKGDANKVTLLYGART 146 (252)
T ss_pred CHhHHHHHHHHHHhcCCCceEEEEEeccC
Confidence 4689999999999999 99999987654
No 449
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=35.69 E-value=42 Score=25.84 Aligned_cols=36 Identities=25% Similarity=0.193 Sum_probs=26.5
Q ss_pred CCCCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 1 MSNPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 1 ~~~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
|...+|.++-.+..|. .+|..|+++||+|+++....
T Consensus 2 ~~~~kI~vIGaG~mG~-----~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 2 MAIKKVGVIGAGQMGN-----GIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CCCCEEEEECCcHHHH-----HHHHHHHHCCCeEEEEeCCH
Confidence 3456788886665553 47888999999999987543
No 450
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=35.68 E-value=42 Score=25.81 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=16.3
Q ss_pred HHHHHHHHHCCCEEEEEeC
Q 043556 21 LEFSQCLANHGVRVTFVNS 39 (166)
Q Consensus 21 l~la~~L~~rGh~Vt~~t~ 39 (166)
+.+|..|+++|++|+++=-
T Consensus 14 l~~A~~L~~~G~~v~i~E~ 32 (356)
T PF01494_consen 14 LAAALALARAGIDVTIIER 32 (356)
T ss_dssp HHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHHhcccccccchh
Confidence 5688999999999999854
No 451
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=35.66 E-value=57 Score=25.97 Aligned_cols=33 Identities=15% Similarity=0.317 Sum_probs=28.2
Q ss_pred EcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 9 IPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 9 ~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
++.+|.|=.--.+.|++.|.++|++|.+++-..
T Consensus 43 ltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGY 75 (326)
T PF02606_consen 43 LTVGGTGKTPLVIWLARLLQARGYRPAILSRGY 75 (326)
T ss_pred cccCCCCchHHHHHHHHHHHhcCCceEEEcCCC
Confidence 567788888888999999999999999987653
No 452
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=35.59 E-value=1.3e+02 Score=25.01 Aligned_cols=40 Identities=13% Similarity=0.243 Sum_probs=35.3
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcch
Q 043556 4 PHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNH 43 (166)
Q Consensus 4 ~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~ 43 (166)
..|+++-..|.|=-.-+..||..|..+|.+|.+++.+.+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 4677888888999999999999999999999999987654
No 453
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=35.54 E-value=1e+02 Score=18.61 Aligned_cols=34 Identities=29% Similarity=0.408 Sum_probs=26.1
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeC
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNS 39 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~ 39 (166)
++++++. ..++..-.+.++..|.+.|.+|.+-..
T Consensus 3 ~v~ii~~-~~~~~~~a~~~~~~Lr~~g~~v~~d~~ 36 (91)
T cd00860 3 QVVVIPV-TDEHLDYAKEVAKKLSDAGIRVEVDLR 36 (91)
T ss_pred EEEEEee-CchHHHHHHHHHHHHHHCCCEEEEECC
Confidence 4555554 457788899999999999999988443
No 454
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=35.50 E-value=97 Score=24.16 Aligned_cols=43 Identities=12% Similarity=-0.086 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhcC-CCCccEEEecCccchHHHHHHHhCCceEEEc
Q 043556 91 GNLEELIEEINEKE-DEKIDCFIADAYMGWTMRIAEKMKLRRGVVW 135 (166)
Q Consensus 91 ~~~~~ll~~l~~~~-~~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~ 135 (166)
..++++++...... .....+||+|- ..+..+|+++|||++.+.
T Consensus 101 ~nl~al~~~~~~~~~~~~i~~visn~--~~~~~lA~~~gIp~~~~~ 144 (286)
T PRK13011 101 HCLNDLLYRWRIGELPMDIVGVVSNH--PDLEPLAAWHGIPFHHFP 144 (286)
T ss_pred ccHHHHHHHHHcCCCCcEEEEEEECC--ccHHHHHHHhCCCEEEeC
Confidence 45788887765421 12456777774 245666999999999874
No 455
>PRK10490 sensor protein KdpD; Provisional
Probab=35.44 E-value=62 Score=29.51 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=32.4
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEe
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVN 38 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t 38 (166)
+.||.+-..||.|=..-|+.-|++|+++|++|.+=.
T Consensus 24 ~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g~ 59 (895)
T PRK10490 24 KLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVGV 59 (895)
T ss_pred cEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 468999999999999999999999999999997643
No 456
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=35.44 E-value=57 Score=26.58 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=26.1
Q ss_pred CCCCChHHHHHHHHHHHHC-CCEEEEEeCCc
Q 043556 12 PAQGHVIPLLEFSQCLANH-GVRVTFVNSEY 41 (166)
Q Consensus 12 p~~GH~~P~l~la~~L~~r-Gh~Vt~~t~~~ 41 (166)
--.|++--+-+||+.|+++ |++|++.+...
T Consensus 9 DNfGDIGVcWRLArqLa~e~g~~VrLwvDdl 39 (374)
T PF10093_consen 9 DNFGDIGVCWRLARQLAAEHGQQVRLWVDDL 39 (374)
T ss_pred cCCcchHHHHHHHHHHHHHhCCeEEEEECCH
Confidence 3468999999999999987 99999998764
No 457
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=35.40 E-value=74 Score=23.45 Aligned_cols=32 Identities=13% Similarity=0.099 Sum_probs=27.4
Q ss_pred CCCCCChHHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 11 APAQGHVIPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 11 ~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
-+|.|=-.-...||..|+++|.+|-++=.+..
T Consensus 10 KGGvGKTt~a~nla~~la~~g~~VlliD~D~q 41 (246)
T TIGR03371 10 KGGVGKTTLTANLASALKLLGEPVLAIDLDPQ 41 (246)
T ss_pred CCCccHHHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 46778889999999999999999999877653
No 458
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=35.27 E-value=2.2e+02 Score=22.28 Aligned_cols=26 Identities=19% Similarity=0.147 Sum_probs=21.9
Q ss_pred CChHHHHHHHHHHHHCCCEEEEEeCC
Q 043556 15 GHVIPLLEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 15 GH~~P~l~la~~L~~rGh~Vt~~t~~ 40 (166)
|--.-++.+++.|.++|+++++++..
T Consensus 15 G~e~~~~~l~~~l~~~~~~~~v~~~~ 40 (374)
T TIGR03088 15 GLENGLVNLINHLPADRYRHAVVALT 40 (374)
T ss_pred cHHHHHHHHHhhccccccceEEEEcC
Confidence 55588999999999999999888743
No 459
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=35.12 E-value=37 Score=27.17 Aligned_cols=31 Identities=26% Similarity=0.300 Sum_probs=25.2
Q ss_pred cCCC-CCChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 10 PAPA-QGHVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 10 ~~p~-~GH~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
|+|. .|.-.=+.++.++|+++ |+||+++-..
T Consensus 9 P~P~~~G~~~r~~~~~~~L~~~-~~v~l~~~~~ 40 (397)
T TIGR03087 9 PYPPNKGDKIRSFHLLRHLAAR-HRVHLGTFVD 40 (397)
T ss_pred CCCCCCCCcEeHHHHHHHHHhc-CcEEEEEeCC
Confidence 4554 48899999999999776 8999998754
No 460
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=35.10 E-value=1.1e+02 Score=24.70 Aligned_cols=36 Identities=19% Similarity=0.296 Sum_probs=30.4
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeC
Q 043556 4 PHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNS 39 (166)
Q Consensus 4 ~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~ 39 (166)
.-|.++-.++.|=..-+.++.++|.++|++|-++-.
T Consensus 206 ~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh 241 (366)
T PRK14489 206 PLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKH 241 (366)
T ss_pred cEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEE
Confidence 356677778889999999999999999999988864
No 461
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=35.03 E-value=41 Score=24.94 Aligned_cols=42 Identities=24% Similarity=0.147 Sum_probs=26.4
Q ss_pred HHHHHHHHhhcCCCCccEEEecCccc---hHHHHHH----HhCCceEEEcccc
Q 043556 93 LEELIEEINEKEDEKIDCFIADAYMG---WTMRIAE----KMKLRRGVVWPSS 138 (166)
Q Consensus 93 ~~~ll~~l~~~~~~~~d~iI~D~~~~---~~~~vA~----~l~iP~i~~~~~~ 138 (166)
+.+.++++. ..||+|+.|.... -...+|- .+++|.|..-=..
T Consensus 83 l~~~~~~l~----~~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGVAK~~ 131 (208)
T cd06559 83 LLEALEKLK----TKPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGVAKSL 131 (208)
T ss_pred HHHHHHhCC----CCCCEEEEeCCccccCCCcchhheeeeecCCCEEEEEccc
Confidence 555565553 4799999997542 2344444 4668998865443
No 462
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=34.90 E-value=1.1e+02 Score=21.59 Aligned_cols=35 Identities=14% Similarity=0.228 Sum_probs=27.8
Q ss_pred EcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcch
Q 043556 9 IPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNH 43 (166)
Q Consensus 9 ~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~ 43 (166)
+.+...|.-.-+++.++.++++|..|..+|.....
T Consensus 77 I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s 111 (179)
T TIGR03127 77 IAISGSGETESLVTVAKKAKEIGATVAAITTNPES 111 (179)
T ss_pred EEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 33344577888999999999999999999986543
No 463
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=34.89 E-value=1.3e+02 Score=22.66 Aligned_cols=42 Identities=24% Similarity=0.299 Sum_probs=33.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHC-CCEEEEEeCCcchhHH
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANH-GVRVTFVNSEYNHQRV 46 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~r-Gh~Vt~~t~~~~~~~~ 46 (166)
-+++...++.|=-...++++..++.. |++|.+++.+.....+
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~ 74 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRT 74 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHH
Confidence 35566677889999999999999877 9999999987654443
No 464
>PRK08862 short chain dehydrogenase; Provisional
Probab=34.88 E-value=90 Score=22.96 Aligned_cols=33 Identities=12% Similarity=0.207 Sum_probs=24.3
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeC
Q 043556 4 PHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNS 39 (166)
Q Consensus 4 ~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~ 39 (166)
.+.++++.++.| + =..++++|+++|++|.++.-
T Consensus 5 ~k~~lVtGas~G-I--G~aia~~la~~G~~V~~~~r 37 (227)
T PRK08862 5 SSIILITSAGSV-L--GRTISCHFARLGATLILCDQ 37 (227)
T ss_pred CeEEEEECCccH-H--HHHHHHHHHHCCCEEEEEcC
Confidence 467777777642 2 46789999999999888643
No 465
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=34.87 E-value=53 Score=24.48 Aligned_cols=22 Identities=23% Similarity=0.119 Sum_probs=18.2
Q ss_pred HHHHHHHHHCCCEEEEEeCCcc
Q 043556 21 LEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 21 l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
-.|+++|++.||+|++.+....
T Consensus 14 ~alA~~~a~ag~eV~igs~r~~ 35 (211)
T COG2085 14 SALALRLAKAGHEVIIGSSRGP 35 (211)
T ss_pred HHHHHHHHhCCCeEEEecCCCh
Confidence 4688999999999999876543
No 466
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=34.84 E-value=64 Score=25.85 Aligned_cols=33 Identities=15% Similarity=0.315 Sum_probs=27.8
Q ss_pred EcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 9 IPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 9 ~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
++.+|.|=.--.+-|++.|.++|++|.+++=..
T Consensus 64 itvGGTGKTP~v~~La~~l~~~G~~~~IlSRGY 96 (338)
T PRK01906 64 VTVGGTGKTPTVIALVDALRAAGFTPGVVSRGY 96 (338)
T ss_pred ccCCCCChHHHHHHHHHHHHHcCCceEEEecCC
Confidence 567788888888899999999999999988553
No 467
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=34.82 E-value=3.2e+02 Score=24.15 Aligned_cols=35 Identities=23% Similarity=0.422 Sum_probs=27.4
Q ss_pred EEEEEcC-CCCCChHHHHHHHHHHHHCCCEEEEEeC
Q 043556 5 HVLVIPA-PAQGHVIPLLEFSQCLANHGVRVTFVNS 39 (166)
Q Consensus 5 ~il~~~~-p~~GH~~P~l~la~~L~~rGh~Vt~~t~ 39 (166)
.+.+.+. +..|=-.-.+.|++.|.++|.+|-++=+
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKP 39 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKP 39 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCC
Confidence 4666544 3458888899999999999999998653
No 468
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=34.79 E-value=50 Score=23.81 Aligned_cols=32 Identities=31% Similarity=0.360 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
+|.++ |.||+- +.+|..|+++||+|+-+=...
T Consensus 2 ~I~Vi---GlGyvG--l~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 2 KIAVI---GLGYVG--LPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp EEEEE-----STTH--HHHHHHHHHTTSEEEEE-S-H
T ss_pred EEEEE---CCCcch--HHHHHHHHhCCCEEEEEeCCh
Confidence 55555 556653 667889999999999886654
No 469
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=34.77 E-value=62 Score=22.52 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=26.3
Q ss_pred cCCCCCChHHHHHHHHHHHHCCCEEEEEeCCc
Q 043556 10 PAPAQGHVIPLLEFSQCLANHGVRVTFVNSEY 41 (166)
Q Consensus 10 ~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~ 41 (166)
+-+|.|=-.-...||..|+++|++|.++=.+.
T Consensus 7 ~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~ 38 (169)
T cd02037 7 GKGGVGKSTVAVNLALALAKLGYKVGLLDADI 38 (169)
T ss_pred CCCcCChhHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 34567888889999999999999999986553
No 470
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=34.75 E-value=73 Score=26.47 Aligned_cols=40 Identities=20% Similarity=0.349 Sum_probs=29.6
Q ss_pred CCCCEEEEEcC-CCCCChHHHHHHHHHHHHCCCEEEEEeCC
Q 043556 1 MSNPHVLVIPA-PAQGHVIPLLEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 1 ~~~~~il~~~~-p~~GH~~P~l~la~~L~~rGh~Vt~~t~~ 40 (166)
|...++++... .+.|=..-...|++.|+++|++|..+=+.
T Consensus 1 ~~m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~G 41 (451)
T PRK01077 1 MRMPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVG 41 (451)
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecC
Confidence 44445666633 44578888999999999999999887553
No 471
>PHA02518 ParA-like protein; Provisional
Probab=34.75 E-value=65 Score=23.04 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=26.3
Q ss_pred CCCCCChHHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 11 APAQGHVIPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 11 ~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
=+|.|=-.-...||..|+++|++|.++=....
T Consensus 9 KGGvGKTT~a~~la~~la~~g~~vlliD~D~q 40 (211)
T PHA02518 9 KGGAGKTTVATNLASWLHADGHKVLLVDLDPQ 40 (211)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 35567778899999999999999999876643
No 472
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=34.65 E-value=1.2e+02 Score=19.83 Aligned_cols=37 Identities=14% Similarity=0.218 Sum_probs=28.8
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCC
Q 043556 4 PHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 4 ~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~ 40 (166)
.+|++++.+|.|-=.-.-..-+...++|-++++-...
T Consensus 2 k~IlLvC~aGmSTSlLV~Km~~aA~~kg~~~~I~A~s 38 (102)
T COG1440 2 KKILLVCAAGMSTSLLVTKMKKAAESKGKDVTIEAYS 38 (102)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHhCCCceEEEEec
Confidence 5899999999887666666667777889888876544
No 473
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=34.59 E-value=94 Score=23.90 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=22.3
Q ss_pred CChHHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 15 GHVIPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 15 GH~~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
|-=.-.-.++..|.+||++||.+=-+++
T Consensus 14 gkgi~~as~g~ll~~~g~~v~~~K~DpY 41 (255)
T cd03113 14 GKGITAASLGRLLKARGLKVTAQKLDPY 41 (255)
T ss_pred chHHHHHHHHHHHHHCCCeEEEEeeccc
Confidence 3346677899999999999999866654
No 474
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=34.56 E-value=46 Score=29.63 Aligned_cols=34 Identities=12% Similarity=-0.003 Sum_probs=27.5
Q ss_pred CCccEEEecCcc--chHHHHHHHhCCceEEEccccH
Q 043556 106 EKIDCFIADAYM--GWTMRIAEKMKLRRGVVWPSSA 139 (166)
Q Consensus 106 ~~~d~iI~D~~~--~~~~~vA~~l~iP~i~~~~~~~ 139 (166)
--+|++|.|.-+ +....+|+++|.+.|.+.+--.
T Consensus 264 G~~D~~vvD~qCi~~~I~eiA~kyG~g~I~tt~r~~ 299 (731)
T cd01916 264 GIADVVVVDEQCIRADILEEAQKLGIPVIATNDKIM 299 (731)
T ss_pred CCCcEEEEecccCcccHHHHHHHhCCCEEEechhhh
Confidence 458999999755 4578999999999999876544
No 475
>PRK08939 primosomal protein DnaI; Reviewed
Probab=34.52 E-value=81 Score=24.80 Aligned_cols=42 Identities=17% Similarity=0.138 Sum_probs=29.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHH
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRV 46 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~ 46 (166)
.+.+.-.+|.|=-.=+..+|.+|.++|..|++++.+.....+
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~l 199 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIREL 199 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHH
Confidence 466666666676667778888888888888877766544333
No 476
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=34.47 E-value=1.1e+02 Score=21.79 Aligned_cols=35 Identities=17% Similarity=0.232 Sum_probs=27.9
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCC
Q 043556 6 VLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 6 il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~ 40 (166)
+.++-+-..|=..-+-++.++|..||++|..+=..
T Consensus 5 l~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~ 39 (161)
T COG1763 5 LGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHA 39 (161)
T ss_pred EEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEec
Confidence 44555556688888899999999999999988554
No 477
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=34.43 E-value=1e+02 Score=23.61 Aligned_cols=39 Identities=13% Similarity=0.146 Sum_probs=26.1
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhH
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQR 45 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~ 45 (166)
||++..=-|. |---+..|+++|.+ +++|+++++...+..
T Consensus 2 ~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~Sg 40 (253)
T PRK13933 2 NILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRSA 40 (253)
T ss_pred eEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCcc
Confidence 5666654443 22337788888865 679999998876543
No 478
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=34.41 E-value=1e+02 Score=22.42 Aligned_cols=32 Identities=9% Similarity=0.048 Sum_probs=24.3
Q ss_pred CCccEEE-ecCc-cchHHHHHHHhCCceEEEccc
Q 043556 106 EKIDCFI-ADAY-MGWTMRIAEKMKLRRGVVWPS 137 (166)
Q Consensus 106 ~~~d~iI-~D~~-~~~~~~vA~~l~iP~i~~~~~ 137 (166)
.++|+|+ .+.- ...+..+|.++|+|.+...-.
T Consensus 49 ~~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v~vRK~ 82 (191)
T TIGR01744 49 DGITKIVTIEASGIAPAIMTGLKLGVPVVFARKK 82 (191)
T ss_pred CCCCEEEEEccccHHHHHHHHHHHCCCEEEEEeC
Confidence 4789998 4442 345788999999999997655
No 479
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=34.40 E-value=96 Score=19.89 Aligned_cols=31 Identities=13% Similarity=0.089 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEE
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVT 35 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt 35 (166)
|+.+.+++.+=...=.-.+...|.++|++++
T Consensus 1 Kv~i~T~GC~~N~~Dse~i~~~l~~~G~~~~ 31 (98)
T PF00919_consen 1 KVYIETLGCQMNQYDSERIASILQAAGYEIV 31 (98)
T ss_pred CEEEEECCCcccHHHHHHHHHHHHhcCCeee
Confidence 3556666666666666677777777777644
No 480
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=34.40 E-value=66 Score=24.10 Aligned_cols=32 Identities=9% Similarity=0.271 Sum_probs=22.8
Q ss_pred CEEEEEcCCC-CCChHHHHHHHHHHHHCCCEEEEE
Q 043556 4 PHVLVIPAPA-QGHVIPLLEFSQCLANHGVRVTFV 37 (166)
Q Consensus 4 ~~il~~~~p~-~GH~~P~l~la~~L~~rGh~Vt~~ 37 (166)
-++++++.++ .+-+- ..+|++|+++|.+|.+.
T Consensus 6 ~k~~lITGa~~~~GIG--~a~a~~l~~~G~~v~~~ 38 (261)
T PRK08690 6 GKKILITGMISERSIA--YGIAKACREQGAELAFT 38 (261)
T ss_pred CcEEEEECCCCCCcHH--HHHHHHHHHCCCEEEEE
Confidence 3678888752 22221 78999999999999875
No 481
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=34.30 E-value=45 Score=26.85 Aligned_cols=34 Identities=21% Similarity=0.408 Sum_probs=22.4
Q ss_pred CCCCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeC
Q 043556 1 MSNPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNS 39 (166)
Q Consensus 1 ~~~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~ 39 (166)
|...+|+|+-.+--| +.+|..|+++|++|+++=.
T Consensus 2 m~~~dV~IvGaG~~G-----l~~A~~L~~~G~~v~viE~ 35 (405)
T PRK08850 2 MQSVDVAIIGGGMVG-----LALAAALKESDLRIAVIEG 35 (405)
T ss_pred CCcCCEEEECccHHH-----HHHHHHHHhCCCEEEEEcC
Confidence 444566666444333 4566778889999999843
No 482
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=33.96 E-value=72 Score=23.43 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=23.7
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 4 PHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 4 ~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
.+++++-.+..| ..-++.|.+.|.+||++.+...
T Consensus 10 k~vlVvGgG~va-----~rk~~~Ll~~ga~VtVvsp~~~ 43 (205)
T TIGR01470 10 RAVLVVGGGDVA-----LRKARLLLKAGAQLRVIAEELE 43 (205)
T ss_pred CeEEEECcCHHH-----HHHHHHHHHCCCEEEEEcCCCC
Confidence 456665443322 6677889999999999987643
No 483
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=33.96 E-value=24 Score=23.22 Aligned_cols=30 Identities=20% Similarity=0.423 Sum_probs=21.5
Q ss_pred EcCCCCCChHHHHHHHHHHHHCCCEEEEEeCC
Q 043556 9 IPAPAQGHVIPLLEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 9 ~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~ 40 (166)
..+||+|+++=-.+|++.+.+.| ++|+.+.
T Consensus 77 ~i~pGyg~lse~~~fa~~~~~~g--i~fiGp~ 106 (110)
T PF00289_consen 77 AIHPGYGFLSENAEFAEACEDAG--IIFIGPS 106 (110)
T ss_dssp EEESTSSTTTTHHHHHHHHHHTT---EESSS-
T ss_pred ccccccchhHHHHHHHHHHHHCC--CEEECcC
Confidence 34688888888888888888877 5566554
No 484
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=33.91 E-value=34 Score=23.13 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=23.2
Q ss_pred ccHHHHHHHHHHhhcCCCCccEEEec-------CccchHHHHHHHhCCceEE
Q 043556 89 MPGNLEELIEEINEKEDEKIDCFIAD-------AYMGWTMRIAEKMKLRRGV 133 (166)
Q Consensus 89 ~~~~~~~ll~~l~~~~~~~~d~iI~D-------~~~~~~~~vA~~l~iP~i~ 133 (166)
....+.++|+.-... ...--||.. .++..+..+|+++++|.+.
T Consensus 57 vp~~v~~FL~~~~N~--~~l~GVigSGNrNfg~~f~~aa~~ia~ky~VPll~ 106 (122)
T PF07972_consen 57 VPKQVIRFLENPDNR--KLLRGVIGSGNRNFGDNFCLAADKIAEKYGVPLLY 106 (122)
T ss_dssp S-HHHHHHHHSHHHG--GGEEEEEEEE-GGGGGGTTHHHHHHHHHHT--EEE
T ss_pred CCHHHHHHHHHHHHH--hhheeEEecCCcHHHHHHHHHHHHHHHHcCCCEEE
Confidence 344566666622211 244555543 3444567899999999987
No 485
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=33.79 E-value=40 Score=27.65 Aligned_cols=23 Identities=9% Similarity=0.263 Sum_probs=19.4
Q ss_pred HHHHHHHHHHCCCEEEEEeCCcc
Q 043556 20 LLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 20 ~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
..-|.++|++.||+|+++.+.-.
T Consensus 343 a~~l~~~m~~~Gh~V~~l~G~l~ 365 (477)
T KOG0332|consen 343 AMWLYEEMRAEGHQVSLLHGDLT 365 (477)
T ss_pred HHHHHHHHHhcCceeEEeeccch
Confidence 45678899999999999998754
No 486
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=33.73 E-value=1.2e+02 Score=22.17 Aligned_cols=42 Identities=5% Similarity=-0.047 Sum_probs=23.0
Q ss_pred HHHHHHHHhhcCCCCccEEEec----CccchHHHHHHHh-----CCceEEEccc
Q 043556 93 LEELIEEINEKEDEKIDCFIAD----AYMGWTMRIAEKM-----KLRRGVVWPS 137 (166)
Q Consensus 93 ~~~ll~~l~~~~~~~~d~iI~D----~~~~~~~~vA~~l-----~iP~i~~~~~ 137 (166)
..++++.+.+ .+|||||.| .-...+..+.+++ +++.+.+...
T Consensus 36 ~~~~~~~~~~---~~pDlvLlDl~~~l~~~~g~~~i~~i~~~~p~~~iivlt~~ 86 (207)
T PRK15411 36 VDDLAIACDS---LRPSVVFINEDCFIHDASNSQRIKQIINQHPNTLFIVFMAI 86 (207)
T ss_pred HHHHHHHHhc---cCCCEEEEeCcccCCCCChHHHHHHHHHHCCCCeEEEEECC
Confidence 3444544332 468999999 3223344444432 4677777544
No 487
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=33.72 E-value=77 Score=26.01 Aligned_cols=35 Identities=11% Similarity=0.007 Sum_probs=25.3
Q ss_pred CCccEEEec-CccchHHHHHHHhCCceEEEc-cccHH
Q 043556 106 EKIDCFIAD-AYMGWTMRIAEKMKLRRGVVW-PSSAA 140 (166)
Q Consensus 106 ~~~d~iI~D-~~~~~~~~vA~~l~iP~i~~~-~~~~~ 140 (166)
....+++.. ....++..+.+++|+|++.+. +.+..
T Consensus 222 A~lniv~~~~~~~~~a~~L~e~~GiP~~~~~~p~G~~ 258 (428)
T cd01965 222 AKATIALGEYSGRKAAKALEEKFGVPYILFPTPIGLK 258 (428)
T ss_pred CcEEEEEChhhhHHHHHHHHHHHCCCeeecCCCcChH
Confidence 456777776 555677888889999999876 44443
No 488
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=33.70 E-value=55 Score=26.70 Aligned_cols=34 Identities=29% Similarity=0.353 Sum_probs=26.5
Q ss_pred CCCCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeC
Q 043556 1 MSNPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNS 39 (166)
Q Consensus 1 ~~~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~ 39 (166)
|...+|+++-.+..| ..+|+.|.++|++|+..-.
T Consensus 1 ~~~~~i~iiGlG~~G-----~slA~~l~~~G~~V~g~D~ 34 (418)
T PRK00683 1 MGLQRVVVLGLGVTG-----KSIARFLAQKGVYVIGVDK 34 (418)
T ss_pred CCCCeEEEEEECHHH-----HHHHHHHHHCCCEEEEEeC
Confidence 666788888777766 3589999999999887553
No 489
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=33.69 E-value=74 Score=24.78 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=24.0
Q ss_pred ChHHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 16 HVIPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 16 H~~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
.+-++++|.+.|.++|+.|-++|..+.
T Consensus 146 Alp~al~ly~~l~~~G~kIf~VSgR~e 172 (275)
T TIGR01680 146 ALPETLKNYNKLVSLGFKIIFLSGRLK 172 (275)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCCch
Confidence 356899999999999999999999864
No 490
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=33.69 E-value=1.3e+02 Score=22.92 Aligned_cols=37 Identities=11% Similarity=0.209 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCC-EEEEEeC
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGV-RVTFVNS 39 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh-~Vt~~t~ 39 (166)
.+||+++|.++...-.-.-...+.|.+.|. +|+++..
T Consensus 28 ~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i 65 (250)
T TIGR02069 28 DAIIVIITSASEEPREVGERYITIFSRLGVKEVKILDV 65 (250)
T ss_pred CceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEec
Confidence 468888888774332334455567777887 4665544
No 491
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=33.67 E-value=3.9e+02 Score=25.59 Aligned_cols=44 Identities=11% Similarity=0.092 Sum_probs=37.0
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhHH
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQRV 46 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~~ 46 (166)
+.+|++.+..+--|=.-..=++--|.++|++|..+...-..+.+
T Consensus 732 ~gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~i 775 (1178)
T TIGR02082 732 KGKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKI 775 (1178)
T ss_pred CCeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHH
Confidence 46899999999999999988888999999999998876544443
No 492
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=33.58 E-value=80 Score=26.23 Aligned_cols=27 Identities=26% Similarity=0.102 Sum_probs=21.1
Q ss_pred CCccEEEecCccchHHHHHHHhCCceEEEc
Q 043556 106 EKIDCFIADAYMGWTMRIAEKMKLRRGVVW 135 (166)
Q Consensus 106 ~~~d~iI~D~~~~~~~~vA~~l~iP~i~~~ 135 (166)
.+||++|.. +....+|+++|||++.+.
T Consensus 394 ~~pDl~ig~---~~~~~~a~k~giP~i~~~ 420 (456)
T TIGR01283 394 YKADLLIAG---GKERYTALKLGIPFCDIN 420 (456)
T ss_pred cCCCEEEEc---cchHHHHHhcCCCEEEcc
Confidence 468998865 446778999999998754
No 493
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=33.43 E-value=84 Score=23.97 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=21.8
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 4 PHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 4 ~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
+||+++...+.| ..++..|.++|+ |.+-+.-+.
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~~g~-v~~sv~t~~ 33 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAEAGY-VIVSVATSY 33 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHhcCC-EEEEEEhhh
Confidence 366666555554 478999999998 655444333
No 494
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=33.43 E-value=95 Score=23.72 Aligned_cols=39 Identities=15% Similarity=0.360 Sum_probs=31.2
Q ss_pred CEEEEEcCC--CCCChHHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 4 PHVLVIPAP--AQGHVIPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 4 ~~il~~~~p--~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
.++.+++++ +.|-....-.++..|+.+|++|.++-..--
T Consensus 2 ~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiG 42 (272)
T COG2894 2 ARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIG 42 (272)
T ss_pred ceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcC
Confidence 456666664 568889999999999999999999876643
No 495
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=33.42 E-value=72 Score=21.63 Aligned_cols=35 Identities=26% Similarity=0.219 Sum_probs=25.1
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCCcc
Q 043556 3 NPHVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSEYN 42 (166)
Q Consensus 3 ~~~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~ 42 (166)
+.+|.|+-.+--| ..|++.|.++||+|+-+.+.+.
T Consensus 10 ~l~I~iIGaGrVG-----~~La~aL~~ag~~v~~v~srs~ 44 (127)
T PF10727_consen 10 RLKIGIIGAGRVG-----TALARALARAGHEVVGVYSRSP 44 (127)
T ss_dssp --EEEEECTSCCC-----CHHHHHHHHTTSEEEEESSCHH
T ss_pred ccEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCCc
Confidence 4577777655555 3689999999999998877654
No 496
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=33.41 E-value=70 Score=25.66 Aligned_cols=32 Identities=22% Similarity=0.364 Sum_probs=28.2
Q ss_pred EcCCCCCChHHHHHHHHHHHHCCCEEEEEeCC
Q 043556 9 IPAPAQGHVIPLLEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 9 ~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~ 40 (166)
++.+|.|=.--.+.|+++|.+||..+-+++=.
T Consensus 55 ltvGGtGKTP~vi~la~~l~~rG~~~gvvSRG 86 (336)
T COG1663 55 LTVGGTGKTPVVIWLAEALQARGVRVGVVSRG 86 (336)
T ss_pred EEECCCCcCHHHHHHHHHHHhcCCeeEEEecC
Confidence 56788898899999999999999999998754
No 497
>PRK06182 short chain dehydrogenase; Validated
Probab=33.25 E-value=1.1e+02 Score=22.86 Aligned_cols=33 Identities=15% Similarity=0.127 Sum_probs=22.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHHCCCEEEEEeCC
Q 043556 5 HVLVIPAPAQGHVIPLLEFSQCLANHGVRVTFVNSE 40 (166)
Q Consensus 5 ~il~~~~p~~GH~~P~l~la~~L~~rGh~Vt~~t~~ 40 (166)
+.++++.++ |.+ =..++++|+++|++|..+.-.
T Consensus 4 k~vlItGas-ggi--G~~la~~l~~~G~~V~~~~r~ 36 (273)
T PRK06182 4 KVALVTGAS-SGI--GKATARRLAAQGYTVYGAARR 36 (273)
T ss_pred CEEEEECCC-ChH--HHHHHHHHHHCCCEEEEEeCC
Confidence 344555543 333 456899999999999876543
No 498
>PRK09004 FMN-binding protein MioC; Provisional
Probab=33.14 E-value=90 Score=21.50 Aligned_cols=37 Identities=14% Similarity=0.229 Sum_probs=21.9
Q ss_pred CCCCEEEEEcCCCCCChH-HHHHHHHHHHHCCCEEEEEeC
Q 043556 1 MSNPHVLVIPAPAQGHVI-PLLEFSQCLANHGVRVTFVNS 39 (166)
Q Consensus 1 ~~~~~il~~~~p~~GH~~-P~l~la~~L~~rGh~Vt~~t~ 39 (166)
|++ |.++-..-.|..- -.-.+++.|.++|++|+++..
T Consensus 1 M~~--i~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~~~ 38 (146)
T PRK09004 1 MAD--ITLISGSTLGGAEYVADHLAEKLEEAGFSTETLHG 38 (146)
T ss_pred CCe--EEEEEEcCchHHHHHHHHHHHHHHHcCCceEEecc
Confidence 554 4444333335543 334566777789999998643
No 499
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=33.14 E-value=83 Score=23.84 Aligned_cols=34 Identities=21% Similarity=0.395 Sum_probs=29.1
Q ss_pred CCCCChHHHHHHHHHHHHCCCEEEEEeCCcchhH
Q 043556 12 PAQGHVIPLLEFSQCLANHGVRVTFVNSEYNHQR 45 (166)
Q Consensus 12 p~~GH~~P~l~la~~L~~rGh~Vt~~t~~~~~~~ 45 (166)
+|-|=-.-.+.||.+|++||-.|+++=.++++.-
T Consensus 11 GGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl 44 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAARGARVALIDADPNQPL 44 (231)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcH
Confidence 5668889999999999999999999988776433
No 500
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=33.13 E-value=1.4e+02 Score=21.56 Aligned_cols=33 Identities=9% Similarity=-0.057 Sum_probs=22.3
Q ss_pred CCccEEEecCccchH--HHHHHHhCCceEEEcccc
Q 043556 106 EKIDCFIADAYMGWT--MRIAEKMKLRRGVVWPSS 138 (166)
Q Consensus 106 ~~~d~iI~D~~~~~~--~~vA~~l~iP~i~~~~~~ 138 (166)
.++|.||........ ...+.+.|||++.+....
T Consensus 54 ~~~d~iii~~~~~~~~~~~~~~~~~ipvv~~~~~~ 88 (264)
T cd06267 54 RRVDGIILAPSRLDDELLEELAALGIPVVLVDRPL 88 (264)
T ss_pred cCcCEEEEecCCcchHHHHHHHHcCCCEEEecccc
Confidence 478888876554332 455777889988886653
Done!