BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043557
(334 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 107 bits (268), Expect = 7e-24, Method: Composition-based stats.
Identities = 49/103 (47%), Positives = 69/103 (66%), Gaps = 1/103 (0%)
Query: 14 RGLWTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLRHASFAPH 73
+G WT EED K++ V +GT WTL+ K R GK CR RW N+L P+++ +S+
Sbjct: 7 KGPWTKEEDQKVIELVKKYGTKQWTLIAKHLK-GRLGKQCRERWHNHLNPEVKKSSWTEE 65
Query: 74 EEEIIINLHKAIGSRWSLIAQQLPGRTDNDVKNFWNTKLKKKL 116
E+ II HK +G+RW+ IA+ LPGRTDN VKN WN+ +K+K+
Sbjct: 66 EDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108
Score = 35.8 bits (81), Expect = 0.039, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 63 PDLRHASFAPHEEEIIINLHKAIGSR-WSLIAQQLPGRTDNDVKNFWNTKLKKKLMK 118
PDL + E++ +I L K G++ W+LIA+ L GR + W+ L ++ K
Sbjct: 3 PDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKK 59
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 67/103 (65%), Gaps = 1/103 (0%)
Query: 14 RGLWTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLRHASFAPH 73
+G WT EED +++ HV +G W+ + K R GK CR RW N+L P+++ S+
Sbjct: 27 KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEE 85
Query: 74 EEEIIINLHKAIGSRWSLIAQQLPGRTDNDVKNFWNTKLKKKL 116
E+ II HK +G+RW+ IA+ LPGRTDN VKN WN+ +++K+
Sbjct: 86 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Query: 47 NRCGKSCRLRWTNYLRPDLRHASFAPHEEEIIINLHKAIG-SRWSLIAQQLPGRTDNDVK 105
NR C+ RW L P+L + E++ +I + G RWS IA+ L GR +
Sbjct: 7 NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCR 66
Query: 106 NFW----NTKLKKKLMKLGIDPITHKPFSQIFSDYGNISGL 142
W N ++KK D I ++ ++ + + I+ L
Sbjct: 67 ERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKL 107
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 99.4 bits (246), Expect = 2e-21, Method: Composition-based stats.
Identities = 43/103 (41%), Positives = 67/103 (65%), Gaps = 1/103 (0%)
Query: 14 RGLWTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLRHASFAPH 73
+G WT EED +++ V +G W+++ K R GK CR RW N+L P+++ S+
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 74 EEEIIINLHKAIGSRWSLIAQQLPGRTDNDVKNFWNTKLKKKL 116
E+ II HK +G+RW+ IA+ LPGRTDN +KN WN+ +++K+
Sbjct: 63 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
Score = 29.6 bits (65), Expect = 2.2, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 74 EEEIIINLHKAIG-SRWSLIAQQLPGRTDNDVKNFWNTKLKKKLMK 118
E++ +I L + G RWS+IA+ L GR + W+ L ++ K
Sbjct: 11 EDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK 56
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 99.4 bits (246), Expect = 3e-21, Method: Composition-based stats.
Identities = 43/103 (41%), Positives = 67/103 (65%), Gaps = 1/103 (0%)
Query: 14 RGLWTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLRHASFAPH 73
+G WT EED +++ V +G W+++ K R GK CR RW N+L P+++ S+
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 74 EEEIIINLHKAIGSRWSLIAQQLPGRTDNDVKNFWNTKLKKKL 116
E+ II HK +G+RW+ IA+ LPGRTDN +KN WN+ +++K+
Sbjct: 63 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
Score = 30.0 bits (66), Expect = 1.8, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 64 DLRHASFAPHEEEIIINLHKAIG-SRWSLIAQQLPGRTDNDVKNFWNTKLKKKLMK 118
+L + E++ +I L + G RWS+IA+ L GR + W+ L ++ K
Sbjct: 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK 56
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 67/103 (65%), Gaps = 1/103 (0%)
Query: 14 RGLWTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLRHASFAPH 73
+G WT EED +++ V +G W+++ K R GK CR RW N+L P+++ S+
Sbjct: 58 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEE 116
Query: 74 EEEIIINLHKAIGSRWSLIAQQLPGRTDNDVKNFWNTKLKKKL 116
E+ II HK +G+RW+ IA+ LPGRTDN +KN WN+ +++K+
Sbjct: 117 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 6/131 (4%)
Query: 17 WTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLRHASFAPHEEE 76
WT EED KL V +GT +W ++ NR C+ RW L P+L + E++
Sbjct: 9 WTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQ 67
Query: 77 IIINLHKAIG-SRWSLIAQQLPGRTDNDVKNFW----NTKLKKKLMKLGIDPITHKPFSQ 131
+I L + G RWS+IA+ L GR + W N ++KK D I ++ +
Sbjct: 68 RVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKR 127
Query: 132 IFSDYGNISGL 142
+ + + I+ L
Sbjct: 128 LGNRWAEIAKL 138
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 62/105 (59%), Gaps = 5/105 (4%)
Query: 14 RGLWTPEEDAKLLAHVANHGTGNWTLVPKKAGL--NRCGKSCRLRWTNYLRPDLRHASFA 71
+G +T ED + +V +G NW P+ NR K CR RW N+L P + ++
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNW---PRITSFLPNRSPKQCRERWFNHLDPAVVKHAWT 58
Query: 72 PHEEEIIINLHKAIGSRWSLIAQQLPGRTDNDVKNFWNTKLKKKL 116
P E+E I + +GS+WS+IA+ +PGRTDN +KN WN+ + K++
Sbjct: 59 PEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRI 103
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 13 KRGLWTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLRHASFAP 72
K+ +TPEED L VA HG+ +W ++ NR + CR RW NYL P + H +
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTA 67
Query: 73 HEEEIIINLHKAIGSRWSLIAQQLPGRTDNDVKNFWNT 110
E+ +++ + G +W++IA+ PGRTD +KN W T
Sbjct: 68 EEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 66 RHASFAPHEEEIIINLHKAIGSRWSLIAQQLPGRTDNDVKNFWNTKL 112
+ F P E+E++ GS W +IA P R ++ W L
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYL 56
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 63.5 bits (153), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 17 WTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLRHASFAPHEEE 76
+T EED KL V +G +W + + + R + CR RW NY+ P LR ++P E+
Sbjct: 4 FTEEEDLKLQQLVMRYGAKDWIRISQLM-ITRNPRQCRERWNNYINPALRTDPWSPEEDM 62
Query: 77 IIINLHKAIGSRWSLIAQQLPGRTDNDVKNFW 108
++ + G +W+ I++ L R+DN+++N W
Sbjct: 63 LLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 57.4 bits (137), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 37/52 (71%)
Query: 65 LRHASFAPHEEEIIINLHKAIGSRWSLIAQQLPGRTDNDVKNFWNTKLKKKL 116
++ S+ E+ II HK +G+RW+ IA+ LPGRTDN +KN WN+ +++K+
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 57.4 bits (137), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 38/53 (71%)
Query: 64 DLRHASFAPHEEEIIINLHKAIGSRWSLIAQQLPGRTDNDVKNFWNTKLKKKL 116
+++ S+ E+ I+ HK +G+RW+ IA+ LPGRTDN +KN WN+ +++K+
Sbjct: 2 EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 47.4 bits (111), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 14 RGLWTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPD 64
+G WT EED +L+ V +G W+++ K R GK CR RW N+L P+
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52
Score = 28.1 bits (61), Expect = 7.9, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 74 EEEIIINLHKAIG-SRWSLIAQQLPGRTDNDVKNFWNTKL 112
E++ +I L + G RWS+IA+ L GR + W+ L
Sbjct: 10 EDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 46.2 bits (108), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 14 RGLWTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPD 64
+G WT EED +++ V +G W+++ K R GK CR RW N+L P+
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52
Score = 28.5 bits (62), Expect = 5.8, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 74 EEEIIINLHKAIG-SRWSLIAQQLPGRTDNDVKNFWNTKL 112
E++ +I L + G RWS+IA+ L GR + W+ L
Sbjct: 10 EDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 46.2 bits (108), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 14 RGLWTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPD 64
+G WT EED +++ V +G W+++ K R GK CR RW N+L P+
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52
Score = 28.5 bits (62), Expect = 6.0, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 74 EEEIIINLHKAIG-SRWSLIAQQLPGRTDNDVKNFWNTKL 112
E++ +I L + G RWS+IA+ L GR + W+ L
Sbjct: 10 EDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 35.4 bits (80), Expect = 0.044, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 17 WTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPD 64
WT EED KL V +GT +W ++ NR C+ RW L P+
Sbjct: 6 WTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 35.4 bits (80), Expect = 0.044, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 17 WTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPD 64
WT EED KL V +GT +W ++ NR C+ RW L P+
Sbjct: 6 WTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52
>pdb|3TED|A Chain A, Crystal Structure Of The Chd1 Dna-Binding Domain In
Complex With A Dna Duplex
Length = 271
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 17 WTPEEDAKLLAHVANHGTGNWTLV 40
WT EED KLL V +G G+WT +
Sbjct: 172 WTKEEDEKLLIGVFKYGYGSWTQI 195
>pdb|2XB0|X Chain X, Dna-Binding Domain From Saccharomyces Cerevisiae
Chromatin- Remodelling Protein Chd1
Length = 270
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 17 WTPEEDAKLLAHVANHGTGNWTLV 40
WT EED KLL V +G G+WT +
Sbjct: 171 WTKEEDEKLLIGVFKYGYGSWTQI 194
>pdb|4DMV|A Chain A, Crystal Structure Of The Gt Domain Of Clostridium
Difficile Toxin A
pdb|4DMW|A Chain A, Crystal Structure Of The Gt Domain Of Clostridium
Difficile Toxin A (Tcda) In Complex With Udp And
Manganese
Length = 556
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 14/102 (13%)
Query: 84 AIG-SRWSLIAQQLPGRTDNDVKNFWNT---KLKKKL---MKLGIDPITHKPFSQIFSDY 136
+IG RW +I + + + N+ + KL ++L KL I+ + K S+IFS
Sbjct: 320 SIGLDRWEMIKLEAIMKYKKYINNYTSENFDKLDQQLKDNFKLIIESKSEK--SEIFSKL 377
Query: 137 GN--ISGLSINTGNHFGKCINNSLMSKPEPY---LVLNGVQN 173
N +S L I G IN +L+SK Y LV+ V+N
Sbjct: 378 ENLNVSDLEIKIAFALGSVINQALISKQGSYLTNLVIEQVKN 419
>pdb|3SRZ|A Chain A, Clostridium Difficile Toxin A (Tcda) Glucolsyltransferase
Domain Bound To Udp-Glucose
pdb|3SS1|A Chain A, Clostridium Difficile Toxin A (Tcda) Glucolsyltransferase
Domain
Length = 555
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 14/102 (13%)
Query: 84 AIG-SRWSLIAQQLPGRTDNDVKNFWNT---KLKKKL---MKLGIDPITHKPFSQIFSDY 136
+IG RW +I + + + N+ + KL ++L KL I+ + K S+IFS
Sbjct: 305 SIGLDRWEMIKLEAIMKYKKYINNYTSENFDKLDQQLKDNFKLIIESKSEK--SEIFSKL 362
Query: 137 GN--ISGLSINTGNHFGKCINNSLMSKPEPY---LVLNGVQN 173
N +S L I G IN +L+SK Y LV+ V+N
Sbjct: 363 ENLNVSDLEIKIAFALGSVINQALISKQGSYLTNLVIEQVKN 404
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 17 WTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYL 61
WT EED +L A V G +W + NR + C+ RW L
Sbjct: 11 WTHEEDEQLRALVRQFGQQDWKFLASHF-PNRTDQQCQYRWLRVL 54
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 30.0 bits (66), Expect = 1.9, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 16 LWTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLRHASFA 71
+W ED L A V +G W+ + + K C+ RW +L P ++ ++
Sbjct: 11 VWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWS 65
>pdb|1W0U|A Chain A, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0U|B Chain B, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna
Length = 55
Score = 30.0 bits (66), Expect = 2.1, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 13 KRGLWTPEEDAKLLAHVANHGTGNWTLVPKKAG-LNRCGKSCRLRWTNYLR 62
K+ WT EE + A V +G GNW + K +NR + RW R
Sbjct: 1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 51
>pdb|1VF9|A Chain A, Solution Structure Of Human Trf2
Length = 64
Score = 29.6 bits (65), Expect = 2.5, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 13 KRGLWTPEEDAKLLAHVANHGTGNWTLVPKK-AGLNRCGKSCRLRWTNYLR 62
K+ WT EE + A V +G GNW + K +NR + RW R
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 60
>pdb|1VFC|A Chain A, Solution Structure Of The Dna Complex Of Human Trf2
Length = 63
Score = 29.6 bits (65), Expect = 2.8, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 13 KRGLWTPEEDAKLLAHVANHGTGNWTLVPKKAG-LNRCGKSCRLRWTNYLR 62
K+ WT EE + A V +G GNW + K +NR + RW R
Sbjct: 9 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 59
>pdb|3SJM|A Chain A, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
pdb|3SJM|B Chain B, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
Length = 64
Score = 29.3 bits (64), Expect = 2.8, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 13 KRGLWTPEEDAKLLAHVANHGTGNWTLVPKKAG-LNRCGKSCRLRWTNYLR 62
K+ WT EE + A V +G GNW + K +NR + RW R
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 60
>pdb|1XG1|A Chain A, Solution Structure Of Myb-Domain Of Human Trf2
Length = 67
Score = 29.3 bits (64), Expect = 3.0, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 13 KRGLWTPEEDAKLLAHVANHGTGNWTLVPKKAG-LNRCGKSCRLRWTNYLR 62
K+ WT EE + A V +G GNW + K +NR + RW R
Sbjct: 13 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 63
>pdb|1BA5|A Chain A, Dna-Binding Domain Of Human Telomeric Protein, Htrf1,
Nmr, 18 Structures
Length = 53
Score = 28.5 bits (62), Expect = 5.9, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 13 KRGLWTPEEDAKLLAHVANHGTGNWTLV 40
KR W EED L + V +G GNW+ +
Sbjct: 2 KRQAWLWEEDKNLRSGVRKYGEGNWSKI 29
>pdb|1W0T|A Chain A, Htrf1 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0T|B Chain B, Htrf1 Dna-Binding Domain In Complex With Telomeric Dna
Length = 53
Score = 28.5 bits (62), Expect = 6.1, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 13 KRGLWTPEEDAKLLAHVANHGTGNWTLV 40
KR W EED L + V +G GNW+ +
Sbjct: 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKI 28
>pdb|1W55|A Chain A, Structure Of The Bifunctional Ispdf From Campylobacter
Jejuni
pdb|1W57|A Chain A, Structure Of The Bifunctional Ispdf From Campylobacter
Jejuni Containing Zn
Length = 371
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 9/51 (17%)
Query: 108 WNTKLKKKLMKLGIDPI---------THKPFSQIFSDYGNISGLSINTGNH 149
+NTK+KK+ ++LG DP+ + PF +I NI+ + T N+
Sbjct: 17 FNTKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSNITYMKKFTKNY 67
>pdb|1IV6|A Chain A, Solution Structure Of The Dna Complex Of Human Trf1
Length = 70
Score = 28.1 bits (61), Expect = 6.7, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 13 KRGLWTPEEDAKLLAHVANHGTGNWTLV 40
KR W EED L + V +G GNW+ +
Sbjct: 10 KRQAWLWEEDKNLRSGVRKYGEGNWSKI 37
>pdb|1ITY|A Chain A, Solution Structure Of The Dna Binding Domain Of Human
Trf1
Length = 69
Score = 28.1 bits (61), Expect = 7.2, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 13 KRGLWTPEEDAKLLAHVANHGTGNWTLV 40
KR W EED L + V +G GNW+ +
Sbjct: 9 KRQAWLWEEDKNLRSGVRKYGEGNWSKI 36
>pdb|2XMO|A Chain A, The Crystal Structure Of Lmo2642
pdb|2XMO|B Chain B, The Crystal Structure Of Lmo2642
Length = 443
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 96 LPGRTDNDVKNFWNTKLKKKLMKLGIDPITHKPFSQIFSDYGNISGLS 143
+PG ++D+ N W K +K +L D I+ FS+I+SD+G +S
Sbjct: 131 VPG--NHDINNPWARKFEKD-KQLPTDTISPTDFSKIYSDFGYEDAIS 175
>pdb|1W9P|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9P|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9U|A Chain A, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9U|B Chain B, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9V|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|1W9V|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|2A3A|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3A|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3B|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3B|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3C|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3C|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3E|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2A3E|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2IUZ|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|2IUZ|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|3CH9|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CH9|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CHC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHD|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHD|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHE|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHE|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHF|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
pdb|3CHF|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
Length = 433
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 163 EPYLVLNGVQNTSYDNPLWDYMAQFHAPVQPHFLTEV 199
+PY NGV S++N +WDY A A H L ++
Sbjct: 311 KPY---NGVGQGSWENGVWDYKALPQAGATEHVLPDI 344
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,192,987
Number of Sequences: 62578
Number of extensions: 403713
Number of successful extensions: 822
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 761
Number of HSP's gapped (non-prelim): 54
length of query: 334
length of database: 14,973,337
effective HSP length: 99
effective length of query: 235
effective length of database: 8,778,115
effective search space: 2062857025
effective search space used: 2062857025
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)