Query 043557
Match_columns 334
No_of_seqs 266 out of 1902
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 10:21:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043557.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043557hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h89_C C-MYB, MYB proto-oncoge 100.0 8.5E-40 2.9E-44 285.6 1.5 149 12-161 4-158 (159)
2 3zqc_A MYB3; transcription-DNA 100.0 9.8E-33 3.4E-37 234.1 9.5 110 14-124 2-111 (131)
3 1gv2_A C-MYB, MYB proto-oncoge 100.0 1.7E-32 5.7E-37 223.8 8.9 104 11-115 1-104 (105)
4 2k9n_A MYB24; R2R3 domain, DNA 100.0 2.1E-32 7.2E-37 224.5 7.1 104 14-118 1-104 (107)
5 1h8a_C AMV V-MYB, MYB transfor 100.0 8.3E-32 2.8E-36 227.3 7.9 108 7-115 20-127 (128)
6 3osg_A MYB21; transcription-DN 100.0 1.2E-31 4.2E-36 226.0 8.6 106 8-115 5-110 (126)
7 1h8a_C AMV V-MYB, MYB transfor 100.0 1E-31 3.4E-36 226.8 1.5 121 40-161 1-127 (128)
8 1h89_C C-MYB, MYB proto-oncoge 100.0 2E-29 6.7E-34 219.9 6.4 108 7-115 51-158 (159)
9 1gv2_A C-MYB, MYB proto-oncoge 99.9 5.6E-24 1.9E-28 173.2 0.8 98 64-161 1-104 (105)
10 3osg_A MYB21; transcription-DN 99.9 3.4E-23 1.2E-27 174.3 0.9 99 62-160 6-109 (126)
11 3zqc_A MYB3; transcription-DNA 99.9 4.9E-23 1.7E-27 174.4 1.5 95 67-161 2-102 (131)
12 2k9n_A MYB24; R2R3 domain, DNA 99.8 4.8E-23 1.7E-27 168.7 -1.5 94 67-160 1-100 (107)
13 2dim_A Cell division cycle 5-l 99.8 8.8E-22 3E-26 149.7 1.7 67 8-75 3-69 (70)
14 2dim_A Cell division cycle 5-l 99.8 7.3E-20 2.5E-24 139.1 6.0 65 62-126 4-69 (70)
15 2din_A Cell division cycle 5-l 99.7 1.7E-17 5.7E-22 124.6 6.0 60 60-120 2-61 (66)
16 2llk_A Cyclin-D-binding MYB-li 99.7 9.7E-18 3.3E-22 128.8 4.3 58 53-111 9-66 (73)
17 1ign_A Protein (RAP1); RAP1,ye 99.7 1.8E-17 6.2E-22 152.3 6.1 106 9-115 3-200 (246)
18 2d9a_A B-MYB, MYB-related prot 99.7 3.4E-17 1.2E-21 120.6 5.0 56 62-117 3-59 (60)
19 2cu7_A KIAA1915 protein; nucle 99.7 1.1E-16 3.7E-21 122.3 6.8 65 61-126 3-67 (72)
20 1ity_A TRF1; helix-turn-helix, 99.7 1.4E-16 4.7E-21 120.7 6.9 63 60-122 3-68 (69)
21 2juh_A Telomere binding protei 99.6 2.7E-17 9.3E-22 137.6 1.9 83 8-91 11-103 (121)
22 2d9a_A B-MYB, MYB-related prot 99.6 4.1E-17 1.4E-21 120.2 2.6 58 8-66 2-59 (60)
23 1gvd_A MYB proto-oncogene prot 99.6 2.1E-16 7.1E-21 113.2 5.7 50 65-114 1-51 (52)
24 1guu_A C-MYB, MYB proto-oncoge 99.6 2.1E-16 7.3E-21 113.0 5.6 51 65-115 1-52 (52)
25 1gvd_A MYB proto-oncogene prot 99.6 7.3E-17 2.5E-21 115.5 2.4 52 12-64 1-52 (52)
26 2roh_A RTBP1, telomere binding 99.6 1.4E-16 4.7E-21 133.5 3.8 79 9-88 26-114 (122)
27 2juh_A Telomere binding protei 99.6 1.4E-16 4.6E-21 133.4 3.1 82 61-142 11-103 (121)
28 2roh_A RTBP1, telomere binding 99.6 5.4E-16 1.9E-20 129.9 6.6 81 62-142 26-117 (122)
29 1guu_A C-MYB, MYB proto-oncoge 99.6 9.9E-17 3.4E-21 114.7 1.3 52 12-64 1-52 (52)
30 1ity_A TRF1; helix-turn-helix, 99.6 2.2E-16 7.7E-21 119.5 1.7 64 8-71 4-68 (69)
31 3sjm_A Telomeric repeat-bindin 99.6 1.4E-15 4.9E-20 113.8 5.7 52 65-116 9-63 (64)
32 1w0t_A Telomeric repeat bindin 99.6 1.8E-15 6.2E-20 108.8 6.0 49 66-114 1-52 (53)
33 2yum_A ZZZ3 protein, zinc fing 99.6 2E-15 6.7E-20 115.9 5.6 62 62-123 3-70 (75)
34 1x41_A Transcriptional adaptor 99.6 2.1E-15 7.2E-20 111.2 5.4 53 62-114 3-56 (60)
35 1x41_A Transcriptional adaptor 99.5 1.1E-15 3.6E-20 112.8 1.6 56 9-65 3-58 (60)
36 3sjm_A Telomeric repeat-bindin 99.5 9E-16 3.1E-20 114.9 0.9 57 10-66 7-64 (64)
37 2elk_A SPCC24B10.08C protein; 99.5 1.5E-14 5E-19 106.1 5.9 50 63-112 5-56 (58)
38 2yum_A ZZZ3 protein, zinc fing 99.5 2.9E-15 1E-19 114.9 -0.0 62 8-70 2-68 (75)
39 2aje_A Telomere repeat-binding 99.5 4E-14 1.4E-18 115.8 6.6 76 63-138 9-95 (105)
40 2din_A Cell division cycle 5-l 99.5 1.5E-15 5.2E-20 113.9 -1.7 60 7-69 2-61 (66)
41 2elk_A SPCC24B10.08C protein; 99.5 9.1E-15 3.1E-19 107.2 1.6 52 10-61 5-56 (58)
42 1w0t_A Telomeric repeat bindin 99.5 9.5E-15 3.2E-19 105.0 1.1 50 13-62 1-51 (53)
43 2ltp_A Nuclear receptor corepr 99.1 1.3E-14 4.5E-19 115.3 0.0 56 60-115 9-64 (89)
44 2cu7_A KIAA1915 protein; nucle 99.4 1.7E-14 5.7E-19 110.1 0.0 58 8-67 3-60 (72)
45 2ckx_A NGTRF1, telomere bindin 99.4 2.2E-13 7.4E-18 107.0 6.1 68 68-135 1-79 (83)
46 1ign_A Protein (RAP1); RAP1,ye 99.4 1.5E-13 5E-18 126.5 3.6 73 63-138 4-82 (246)
47 2aje_A Telomere repeat-binding 99.4 2.7E-13 9.4E-18 110.8 3.8 81 6-86 5-94 (105)
48 2llk_A Cyclin-D-binding MYB-li 99.3 2.2E-13 7.4E-18 104.6 1.9 61 3-67 12-72 (73)
49 2ckx_A NGTRF1, telomere bindin 99.3 5E-13 1.7E-17 105.0 3.2 69 15-84 1-79 (83)
50 2yus_A SWI/SNF-related matrix- 99.3 9.8E-13 3.4E-17 102.3 4.3 49 63-111 14-62 (79)
51 2cqr_A RSGI RUH-043, DNAJ homo 99.3 2.1E-12 7E-17 99.1 5.8 51 63-113 14-68 (73)
52 2yus_A SWI/SNF-related matrix- 99.3 8.1E-13 2.8E-17 102.8 2.5 52 7-60 11-62 (79)
53 2ltp_A Nuclear receptor corepr 98.9 9.6E-13 3.3E-17 104.5 0.0 55 7-63 9-63 (89)
54 2cqr_A RSGI RUH-043, DNAJ homo 99.2 2.5E-12 8.5E-17 98.6 0.7 55 7-62 11-68 (73)
55 1x58_A Hypothetical protein 49 99.1 6.8E-11 2.3E-15 87.6 6.2 50 65-114 6-58 (62)
56 2cjj_A Radialis; plant develop 99.0 2E-10 6.9E-15 91.9 6.0 49 66-114 7-59 (93)
57 2cjj_A Radialis; plant develop 98.9 2.5E-10 8.6E-15 91.3 -0.1 48 13-61 7-57 (93)
58 2eqr_A N-COR1, N-COR, nuclear 98.8 4.4E-09 1.5E-13 77.5 5.6 47 66-112 11-57 (61)
59 3hm5_A DNA methyltransferase 1 98.7 1.5E-08 5E-13 81.0 5.7 66 51-120 18-88 (93)
60 1x58_A Hypothetical protein 49 98.6 5.6E-09 1.9E-13 77.3 1.3 49 12-62 6-57 (62)
61 2cqq_A RSGI RUH-037, DNAJ homo 98.6 5.3E-08 1.8E-12 74.3 5.3 50 64-114 5-58 (72)
62 2eqr_A N-COR1, N-COR, nuclear 98.6 1.9E-08 6.4E-13 74.1 2.2 51 8-60 6-56 (61)
63 1fex_A TRF2-interacting telome 98.6 7.2E-08 2.5E-12 70.8 5.1 47 67-113 2-58 (59)
64 2iw5_B Protein corest, REST co 98.5 1.3E-07 4.5E-12 86.3 6.1 49 66-114 132-180 (235)
65 2cqq_A RSGI RUH-037, DNAJ homo 98.4 3.4E-08 1.2E-12 75.4 -0.0 51 10-62 4-57 (72)
66 2xag_B REST corepressor 1; ami 98.4 2.2E-07 7.5E-12 93.4 4.6 46 68-113 381-426 (482)
67 1wgx_A KIAA1903 protein; MYB D 98.2 1.3E-06 4.4E-11 66.8 5.6 48 66-113 7-58 (73)
68 1wgx_A KIAA1903 protein; MYB D 98.2 1.6E-07 5.4E-12 71.8 0.6 48 14-62 8-58 (73)
69 1fex_A TRF2-interacting telome 98.1 3.2E-07 1.1E-11 67.3 0.3 48 14-62 2-58 (59)
70 2iw5_B Protein corest, REST co 98.1 6.8E-07 2.3E-11 81.7 1.7 50 11-62 130-179 (235)
71 1ofc_X ISWI protein; nuclear p 97.9 2.9E-05 9.9E-10 74.1 8.1 101 15-116 111-277 (304)
72 4eef_G F-HB80.4, designed hema 97.9 2.9E-06 9.9E-11 64.6 0.9 44 14-58 20-66 (74)
73 2yqk_A Arginine-glutamic acid 97.8 3.7E-05 1.3E-09 56.8 6.4 49 62-110 4-53 (63)
74 4eef_G F-HB80.4, designed hema 97.6 1.6E-05 5.6E-10 60.5 1.7 43 67-109 20-66 (74)
75 1ug2_A 2610100B20RIK gene prod 97.5 0.00016 5.6E-09 57.0 6.2 48 68-115 34-84 (95)
76 2yqk_A Arginine-glutamic acid 97.5 3.5E-05 1.2E-09 56.9 2.3 49 8-58 3-52 (63)
77 2lr8_A CAsp8-associated protei 96.4 3E-05 1E-09 58.1 0.0 44 69-113 16-62 (70)
78 4iej_A DNA methyltransferase 1 97.3 0.00052 1.8E-08 54.5 7.0 53 67-119 30-87 (93)
79 2xag_B REST corepressor 1; ami 97.2 8.8E-05 3E-09 74.6 1.6 49 11-61 377-425 (482)
80 2crg_A Metastasis associated p 97.2 0.00069 2.4E-08 51.0 5.8 44 67-110 8-52 (70)
81 3hm5_A DNA methyltransferase 1 97.1 0.00011 3.9E-09 58.4 1.3 48 13-61 29-80 (93)
82 4a69_C Nuclear receptor corepr 97.1 0.00062 2.1E-08 54.1 5.6 44 67-110 43-86 (94)
83 4b4c_A Chromodomain-helicase-D 97.1 0.00044 1.5E-08 61.7 4.7 33 11-43 4-38 (211)
84 2ebi_A DNA binding protein GT- 97.1 0.00052 1.8E-08 53.2 4.4 50 66-115 3-66 (86)
85 2crg_A Metastasis associated p 96.7 0.00047 1.6E-08 51.9 1.5 44 13-58 7-51 (70)
86 4a69_C Nuclear receptor corepr 96.7 0.00045 1.6E-08 54.9 1.4 43 14-58 43-85 (94)
87 2ebi_A DNA binding protein GT- 96.6 0.00011 3.8E-09 57.1 -2.6 49 13-61 3-63 (86)
88 2y9y_A Imitation switch protei 96.5 0.0044 1.5E-07 60.5 7.2 103 15-117 124-294 (374)
89 2lr8_A CAsp8-associated protei 94.9 0.0013 4.6E-08 49.2 0.0 46 15-62 15-62 (70)
90 1ug2_A 2610100B20RIK gene prod 95.8 0.0024 8.1E-08 50.5 1.2 44 15-59 34-79 (95)
91 4iej_A DNA methyltransferase 1 94.3 0.011 3.7E-07 47.0 0.9 48 12-60 28-79 (93)
92 4b4c_A Chromodomain-helicase-D 94.0 0.045 1.5E-06 48.5 4.3 39 5-43 125-163 (211)
93 1irz_A ARR10-B; helix-turn-hel 93.6 0.15 5.1E-06 37.7 5.8 49 65-113 5-58 (64)
94 2xb0_X Chromo domain-containin 90.7 0.2 6.8E-06 46.8 4.3 28 15-42 169-196 (270)
95 2xb0_X Chromo domain-containin 90.5 0.14 4.9E-06 47.8 3.2 26 69-94 170-196 (270)
96 1ofc_X ISWI protein; nuclear p 90.4 0.38 1.3E-05 45.7 6.1 41 68-108 111-152 (304)
97 1irz_A ARR10-B; helix-turn-hel 80.0 0.57 1.9E-05 34.5 1.1 50 11-60 4-56 (64)
98 2li6_A SWI/SNF chromatin-remod 59.3 5.8 0.0002 31.9 2.9 39 77-115 53-99 (116)
99 2jrz_A Histone demethylase jar 58.3 11 0.00039 30.2 4.5 39 77-115 44-94 (117)
100 2rq5_A Protein jumonji; develo 58.1 9.7 0.00033 31.1 4.0 90 14-132 7-111 (121)
101 2y9y_A Imitation switch protei 57.7 5.5 0.00019 38.8 2.9 32 13-44 227-261 (374)
102 2lm1_A Lysine-specific demethy 57.6 14 0.00047 29.0 4.8 39 77-115 48-98 (107)
103 1c20_A DEAD ringer protein; DN 56.7 13 0.00045 30.3 4.7 40 76-115 55-107 (128)
104 2kk0_A AT-rich interactive dom 56.2 13 0.00043 31.2 4.6 50 76-125 67-131 (145)
105 2cxy_A BAF250B subunit, HBAF25 54.8 15 0.00051 29.8 4.7 39 77-115 55-105 (125)
106 1kkx_A Transcription regulator 53.8 9 0.00031 31.3 3.2 41 77-117 52-100 (123)
107 2eqy_A RBP2 like, jumonji, at 52.6 16 0.00055 29.6 4.5 39 77-115 46-96 (122)
108 2rq5_A Protein jumonji; develo 45.2 4.2 0.00014 33.3 -0.2 59 23-84 45-114 (121)
109 2jxj_A Histone demethylase jar 42.1 12 0.00042 28.7 2.1 39 77-115 40-90 (96)
110 1ig6_A MRF-2, modulator recogn 35.9 14 0.00048 29.0 1.6 40 76-115 36-88 (107)
111 2li6_A SWI/SNF chromatin-remod 35.3 5.1 0.00017 32.3 -1.2 39 24-63 53-98 (116)
112 1u78_A TC3 transposase, transp 33.8 96 0.0033 24.0 6.3 85 16-105 6-97 (141)
113 2k27_A Paired box protein PAX- 32.8 1.1E+02 0.0038 24.6 6.8 66 15-85 24-99 (159)
114 3i4p_A Transcriptional regulat 32.4 41 0.0014 27.8 4.0 45 73-118 3-48 (162)
115 2p1m_A SKP1-like protein 1A; F 28.1 36 0.0012 28.5 3.0 35 38-80 119-153 (160)
116 2o8x_A Probable RNA polymerase 25.5 77 0.0026 21.5 3.9 43 70-114 16-58 (70)
117 1ku3_A Sigma factor SIGA; heli 24.8 80 0.0027 22.1 4.0 44 70-115 11-58 (73)
118 3cz6_A DNA-binding protein RAP 21.8 48 0.0016 28.6 2.5 17 10-26 110-126 (168)
119 2kk0_A AT-rich interactive dom 21.1 24 0.00083 29.4 0.5 54 24-77 68-134 (145)
120 2e1c_A Putative HTH-type trans 20.5 1.2E+02 0.0042 25.2 4.9 46 72-118 26-72 (171)
No 1
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=100.00 E-value=8.5e-40 Score=285.58 Aligned_cols=149 Identities=28% Similarity=0.519 Sum_probs=105.0
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC-chh
Q 043557 12 VKRGLWTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLRHASFAPHEEEIIINLHKAIGS-RWS 90 (334)
Q Consensus 12 lkkg~WT~EED~~L~~lv~k~g~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~~v~~~G~-~W~ 90 (334)
+++++||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|.+++|+||+|||.+|+.+|.+||. +|.
T Consensus 4 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~ 82 (159)
T 1h89_C 4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWS 82 (159)
T ss_dssp ----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHH
Confidence 6799999999999999999999989999999998 99999999999999999999999999999999999999995 799
Q ss_pred hhhhcCCCCCHHHHHHHHHHHhHHHhhhCCCCCCCCchHHHHHHhhCCCCC-----CCCCCCCCCCCCcccccCCC
Q 043557 91 LIAQQLPGRTDNDVKNFWNTKLKKKLMKLGIDPITHKPFSQIFSDYGNISG-----LSINTGNHFGKCINNSLMSK 161 (334)
Q Consensus 91 ~Ia~~l~gRt~~qcr~RW~~~Lr~~ikrg~~t~~E~~~l~~l~~~~Gn~~~-----l~~rt~n~ikn~~Ns~l~kk 161 (334)
.||..|++|++++|++||.++|.|.+++++||++|+..|++++..||+.|. +|+||++.++|+|+..++++
T Consensus 83 ~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 83 VIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp HHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred HHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999543 89999999999999888775
No 2
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.97 E-value=9.8e-33 Score=234.09 Aligned_cols=110 Identities=35% Similarity=0.647 Sum_probs=106.5
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhh
Q 043557 14 RGLWTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLRHASFAPHEEEIIINLHKAIGSRWSLIA 93 (334)
Q Consensus 14 kg~WT~EED~~L~~lv~k~g~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~~v~~~G~~W~~Ia 93 (334)
||+||+|||++|+++|.+||.++|..||..|+ +|++.||++||.++|+|.+++|+||+|||.+|+.+|.+||++|..||
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 79999999999999999999889999999998 99999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHhHHHhhhCCCCCC
Q 043557 94 QQLPGRTDNDVKNFWNTKLKKKLMKLGIDPI 124 (334)
Q Consensus 94 ~~l~gRt~~qcr~RW~~~Lr~~ikrg~~t~~ 124 (334)
..|+|||+.+|++||+++|++.+..+.++.+
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~ 111 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNSNHKE 111 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCTTSCC
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCCCccc
Confidence 9999999999999999999999988887654
No 3
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.97 E-value=1.7e-32 Score=223.77 Aligned_cols=104 Identities=41% Similarity=0.882 Sum_probs=99.6
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchh
Q 043557 11 NVKRGLWTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLRHASFAPHEEEIIINLHKAIGSRWS 90 (334)
Q Consensus 11 ~lkkg~WT~EED~~L~~lv~k~g~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~~v~~~G~~W~ 90 (334)
.+++|+||+|||++|+++|.+||..+|..||+.|+ +|++.||++||.++|+|.+++|+||+|||.+|+.+|.+||.+|.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 47899999999999999999999989999999998 99999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCHHHHHHHHHHHhHHH
Q 043557 91 LIAQQLPGRTDNDVKNFWNTKLKKK 115 (334)
Q Consensus 91 ~Ia~~l~gRt~~qcr~RW~~~Lr~~ 115 (334)
.||+.||||++.+|++||+.++++.
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999998865
No 4
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.97 E-value=2.1e-32 Score=224.49 Aligned_cols=104 Identities=29% Similarity=0.588 Sum_probs=100.7
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhh
Q 043557 14 RGLWTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLRHASFAPHEEEIIINLHKAIGSRWSLIA 93 (334)
Q Consensus 14 kg~WT~EED~~L~~lv~k~g~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~~v~~~G~~W~~Ia 93 (334)
||+||+|||++|+++|.+||..+|..||..|+ +|+++||++||.++|+|.+++|+||+|||.+|+.+|.+||.+|..||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 68999999999999999999989999999999 99999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHhHHHhhh
Q 043557 94 QQLPGRTDNDVKNFWNTKLKKKLMK 118 (334)
Q Consensus 94 ~~l~gRt~~qcr~RW~~~Lr~~ikr 118 (334)
+.|+||++.+|++||..++++..+.
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 9999999999999999999987654
No 5
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.97 E-value=8.3e-32 Score=227.28 Aligned_cols=108 Identities=42% Similarity=0.858 Sum_probs=102.7
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 043557 7 CDKSNVKRGLWTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLRHASFAPHEEEIIINLHKAIG 86 (334)
Q Consensus 7 ~~kp~lkkg~WT~EED~~L~~lv~k~g~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~~v~~~G 86 (334)
..+|.+++|+||+|||++|+++|.+||..+|..||..|+ +|++.||++||.++|+|.+++|+||+|||.+|+++|.+||
T Consensus 20 ~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G 98 (128)
T 1h8a_C 20 VLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG 98 (128)
T ss_dssp --CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHC
T ss_pred hhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHC
Confidence 357999999999999999999999999989999999998 9999999999999999999999999999999999999999
Q ss_pred CchhhhhhcCCCCCHHHHHHHHHHHhHHH
Q 043557 87 SRWSLIAQQLPGRTDNDVKNFWNTKLKKK 115 (334)
Q Consensus 87 ~~W~~Ia~~l~gRt~~qcr~RW~~~Lr~~ 115 (334)
.+|..||+.|+||++.+|++||+.++++.
T Consensus 99 ~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 99 NRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp SCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred cCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999998764
No 6
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.97 E-value=1.2e-31 Score=226.05 Aligned_cols=106 Identities=36% Similarity=0.735 Sum_probs=101.7
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 043557 8 DKSNVKRGLWTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLRHASFAPHEEEIIINLHKAIGS 87 (334)
Q Consensus 8 ~kp~lkkg~WT~EED~~L~~lv~k~g~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~~v~~~G~ 87 (334)
.++..++|+||+|||++|+++|.+||. +|..||+.|+ +|+++||++||.++|+|.+++|+||+|||++|+++|.+||.
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 467899999999999999999999999 9999999998 99999999999999999999999999999999999999999
Q ss_pred chhhhhhcCCCCCHHHHHHHHHHHhHHH
Q 043557 88 RWSLIAQQLPGRTDNDVKNFWNTKLKKK 115 (334)
Q Consensus 88 ~W~~Ia~~l~gRt~~qcr~RW~~~Lr~~ 115 (334)
+|..||+.|+||++.+|++||..++++.
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999988754
No 7
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.96 E-value=1e-31 Score=226.76 Aligned_cols=121 Identities=25% Similarity=0.431 Sum_probs=95.1
Q ss_pred cccccCCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC-chhhhhhcCCCCCHHHHHHHHHHHhHHHhhh
Q 043557 40 VPKKAGLNRCGKSCRLRWTNYLRPDLRHASFAPHEEEIIINLHKAIGS-RWSLIAQQLPGRTDNDVKNFWNTKLKKKLMK 118 (334)
Q Consensus 40 IA~~l~~~Rt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~~v~~~G~-~W~~Ia~~l~gRt~~qcr~RW~~~Lr~~ikr 118 (334)
||+.|+ +|++.||+.||.++|+|++++|+||+|||++|+++|.+||. +|..||..|+||++.+|+.||.++|.|.+++
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 788898 99999999999999999999999999999999999999994 7999999999999999999999999999999
Q ss_pred CCCCCCCCchHHHHHHhhCCCCC-----CCCCCCCCCCCCcccccCCC
Q 043557 119 LGIDPITHKPFSQIFSDYGNISG-----LSINTGNHFGKCINNSLMSK 161 (334)
Q Consensus 119 g~~t~~E~~~l~~l~~~~Gn~~~-----l~~rt~n~ikn~~Ns~l~kk 161 (334)
+.||++|+..|+.++..||+.|. +|+||++.++|.|+..++++
T Consensus 80 ~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 80 TSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp SCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred ccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999554 89999999999999888764
No 8
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.95 E-value=2e-29 Score=219.94 Aligned_cols=108 Identities=40% Similarity=0.840 Sum_probs=103.5
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhC
Q 043557 7 CDKSNVKRGLWTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLRHASFAPHEEEIIINLHKAIG 86 (334)
Q Consensus 7 ~~kp~lkkg~WT~EED~~L~~lv~k~g~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~~v~~~G 86 (334)
..+|.+++|+||+|||++|+++|.+||..+|..||..|+ +|++.||+.||.++|+|.+++++||+|||.+|++++.+||
T Consensus 51 ~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g 129 (159)
T 1h89_C 51 VLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG 129 (159)
T ss_dssp TTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred ccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHC
Confidence 357999999999999999999999999888999999998 9999999999999999999999999999999999999999
Q ss_pred CchhhhhhcCCCCCHHHHHHHHHHHhHHH
Q 043557 87 SRWSLIAQQLPGRTDNDVKNFWNTKLKKK 115 (334)
Q Consensus 87 ~~W~~Ia~~l~gRt~~qcr~RW~~~Lr~~ 115 (334)
.+|..||+.|||||+.+|++||+.++++.
T Consensus 130 ~~W~~Ia~~l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 130 NRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp SCHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999988764
No 9
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.87 E-value=5.6e-24 Score=173.21 Aligned_cols=98 Identities=24% Similarity=0.411 Sum_probs=91.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-chhhhhhcCCCCCHHHHHHHHHHHhHHHhhhCCCCCCCCchHHHHHHhhCCCCC-
Q 043557 64 DLRHASFAPHEEEIIINLHKAIGS-RWSLIAQQLPGRTDNDVKNFWNTKLKKKLMKLGIDPITHKPFSQIFSDYGNISG- 141 (334)
Q Consensus 64 ~lkkg~WT~EED~~Ll~~v~~~G~-~W~~Ia~~l~gRt~~qcr~RW~~~Lr~~ikrg~~t~~E~~~l~~l~~~~Gn~~~- 141 (334)
++++|+||+|||++|+.+|.+||. +|..||..|++|++++|+.||.++|.|.++++.||++|+..|+.++..||+.|.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~ 80 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE 80 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence 478999999999999999999995 799999999999999999999999999999999999999999999999999544
Q ss_pred ----CCCCCCCCCCCCcccccCCC
Q 043557 142 ----LSINTGNHFGKCINNSLMSK 161 (334)
Q Consensus 142 ----l~~rt~n~ikn~~Ns~l~kk 161 (334)
+|+||++.+++.|+..++++
T Consensus 81 Ia~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 81 IAKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HHTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHHcCCCCHHHHHHHHHHHHhcc
Confidence 89999999999999887764
No 10
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.86 E-value=3.4e-23 Score=174.33 Aligned_cols=99 Identities=18% Similarity=0.301 Sum_probs=92.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHHHHhHHHhhhCCCCCCCCchHHHHHHhhCCCCC
Q 043557 62 RPDLRHASFAPHEEEIIINLHKAIGSRWSLIAQQLPGRTDNDVKNFWNTKLKKKLMKLGIDPITHKPFSQIFSDYGNISG 141 (334)
Q Consensus 62 ~p~lkkg~WT~EED~~Ll~~v~~~G~~W~~Ia~~l~gRt~~qcr~RW~~~Lr~~ikrg~~t~~E~~~l~~l~~~~Gn~~~ 141 (334)
.+..++|+||+|||++|+++|.+||.+|..||..|++|+++||+.||.++|.|.++++.||++|+..|+.++..||+.|.
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~ 85 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQWA 85 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999998553
Q ss_pred -----CCCCCCCCCCCCcccccCC
Q 043557 142 -----LSINTGNHFGKCINNSLMS 160 (334)
Q Consensus 142 -----l~~rt~n~ikn~~Ns~l~k 160 (334)
+++||++.+++.|+..+++
T Consensus 86 ~Ia~~l~gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 86 IIAKFFPGRTDIHIKNRWVTISNK 109 (126)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHh
Confidence 8999999999999876655
No 11
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.85 E-value=4.9e-23 Score=174.41 Aligned_cols=95 Identities=20% Similarity=0.345 Sum_probs=90.7
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHHHHHhHHHhhhCCCCCCCCchHHHHHHhhCCCC-----
Q 043557 67 HASFAPHEEEIIINLHKAIG-SRWSLIAQQLPGRTDNDVKNFWNTKLKKKLMKLGIDPITHKPFSQIFSDYGNIS----- 140 (334)
Q Consensus 67 kg~WT~EED~~Ll~~v~~~G-~~W~~Ia~~l~gRt~~qcr~RW~~~Lr~~ikrg~~t~~E~~~l~~l~~~~Gn~~----- 140 (334)
||+||+|||++|+.+|.+|| ++|..||..|++|++.||+.||.++|.|.+++|.||++|+..|+.++..||+.|
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~ 81 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAK 81 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 79999999999999999999 789999999999999999999999999999999999999999999999999954
Q ss_pred CCCCCCCCCCCCCcccccCCC
Q 043557 141 GLSINTGNHFGKCINNSLMSK 161 (334)
Q Consensus 141 ~l~~rt~n~ikn~~Ns~l~kk 161 (334)
.+++||++.+++.|++.+.++
T Consensus 82 ~l~gRt~~~~k~rw~~~l~~~ 102 (131)
T 3zqc_A 82 LIPGRTDNAIKNRWNSSISKR 102 (131)
T ss_dssp TSTTCCHHHHHHHHHHTTGGG
T ss_pred HcCCCCHHHHHHHHHHHHHHH
Confidence 389999999999999998775
No 12
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.84 E-value=4.8e-23 Score=168.71 Aligned_cols=94 Identities=18% Similarity=0.253 Sum_probs=88.2
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHHHHHhHHHhhhCCCCCCCCchHHHHHHhhCCCCC----
Q 043557 67 HASFAPHEEEIIINLHKAIG-SRWSLIAQQLPGRTDNDVKNFWNTKLKKKLMKLGIDPITHKPFSQIFSDYGNISG---- 141 (334)
Q Consensus 67 kg~WT~EED~~Ll~~v~~~G-~~W~~Ia~~l~gRt~~qcr~RW~~~Lr~~ikrg~~t~~E~~~l~~l~~~~Gn~~~---- 141 (334)
||+||+|||++|+.+|.+|| .+|..||..|++|++.||+.||.++|.|.+++++||++|+..|+.++..||+.|.
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~ 80 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK 80 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 68999999999999999999 5899999999999999999999999999999999999999999999999999655
Q ss_pred -CCCCCCCCCCCCcccccCC
Q 043557 142 -LSINTGNHFGKCINNSLMS 160 (334)
Q Consensus 142 -l~~rt~n~ikn~~Ns~l~k 160 (334)
+|+||++.+++.|+..+++
T Consensus 81 ~l~gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 81 FLKNRSDNNIRNRWMMIARH 100 (107)
T ss_dssp HHSSSCHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHhh
Confidence 7999999999999866544
No 13
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=8.8e-22 Score=149.68 Aligned_cols=67 Identities=25% Similarity=0.583 Sum_probs=64.8
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccccccCCCCCCCCCCHHHH
Q 043557 8 DKSNVKRGLWTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLRHASFAPHEE 75 (334)
Q Consensus 8 ~kp~lkkg~WT~EED~~L~~lv~k~g~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkkg~WT~EED 75 (334)
..|.+++|+||+|||++|+++|.+||..+|..||..|+ +|+++||+.||.++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 46889999999999999999999999889999999999 99999999999999999999999999998
No 14
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=7.3e-20 Score=139.06 Aligned_cols=65 Identities=20% Similarity=0.277 Sum_probs=63.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHHHHHhHHHhhhCCCCCCCC
Q 043557 62 RPDLRHASFAPHEEEIIINLHKAIG-SRWSLIAQQLPGRTDNDVKNFWNTKLKKKLMKLGIDPITH 126 (334)
Q Consensus 62 ~p~lkkg~WT~EED~~Ll~~v~~~G-~~W~~Ia~~l~gRt~~qcr~RW~~~Lr~~ikrg~~t~~E~ 126 (334)
.|.+++|+||+|||++|+++|.+|| ++|..||..|++|+++|||+||.++|+|.+++++||++||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4788999999999999999999999 8999999999999999999999999999999999999997
No 15
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.7e-17 Score=124.60 Aligned_cols=60 Identities=22% Similarity=0.341 Sum_probs=57.8
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHHHHhHHHhhhCC
Q 043557 60 YLRPDLRHASFAPHEEEIIINLHKAIGSRWSLIAQQLPGRTDNDVKNFWNTKLKKKLMKLG 120 (334)
Q Consensus 60 ~L~p~lkkg~WT~EED~~Ll~~v~~~G~~W~~Ia~~l~gRt~~qcr~RW~~~Lr~~ikrg~ 120 (334)
+|+|.+++++||+|||++|+++|++||.+|..||. ++|||+++||+||.++|++.++++.
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 79999999999999999999999999999999999 8899999999999999999998865
No 16
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.69 E-value=9.7e-18 Score=128.82 Aligned_cols=58 Identities=21% Similarity=0.299 Sum_probs=46.5
Q ss_pred cccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHHHH
Q 043557 53 CRLRWTNYLRPDLRHASFAPHEEEIIINLHKAIGSRWSLIAQQLPGRTDNDVKNFWNTK 111 (334)
Q Consensus 53 Cr~Rw~~~L~p~lkkg~WT~EED~~Ll~~v~~~G~~W~~Ia~~l~gRt~~qcr~RW~~~ 111 (334)
..-||.++|+|++++|+||+|||++|+++|.+||.+|+.||+.| |||+++||+||+.+
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L 66 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM 66 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence 34589999999999999999999999999999999999999999 99999999999854
No 17
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.68 E-value=1.8e-17 Score=152.32 Aligned_cols=106 Identities=22% Similarity=0.291 Sum_probs=92.7
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCC-----ccccccccCCcccccccccccccccCCCCC-----------------
Q 043557 9 KSNVKRGLWTPEEDAKLLAHVANHGTGN-----WTLVPKKAGLNRCGKSCRLRWTNYLRPDLR----------------- 66 (334)
Q Consensus 9 kp~lkkg~WT~EED~~L~~lv~k~g~~~-----W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lk----------------- 66 (334)
.+.+++++||+|||+.|+++|.++|..+ |.+||+.|+ |||+.|||.||..+|.+.+.
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 4577899999999999999999998743 999999999 99999999999999999986
Q ss_pred ------------CCCCCHHHHHHHHHHHHH-h------------------------------------------------
Q 043557 67 ------------HASFAPHEEEIIINLHKA-I------------------------------------------------ 85 (334)
Q Consensus 67 ------------kg~WT~EED~~Ll~~v~~-~------------------------------------------------ 85 (334)
+..||.|||-.|...+.+ |
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 899999999999999977 2
Q ss_pred -----C----CchhhhhhcCCCCCHHHHHHHHHHHhHHH
Q 043557 86 -----G----SRWSLIAQQLPGRTDNDVKNFWNTKLKKK 115 (334)
Q Consensus 86 -----G----~~W~~Ia~~l~gRt~~qcr~RW~~~Lr~~ 115 (334)
| ..|..||+.+|+||..+.|+||...|+..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 1 16999999999999999999999988755
No 18
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.67 E-value=3.4e-17 Score=120.57 Aligned_cols=56 Identities=21% Similarity=0.427 Sum_probs=53.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHHHHHhHHHhh
Q 043557 62 RPDLRHASFAPHEEEIIINLHKAIG-SRWSLIAQQLPGRTDNDVKNFWNTKLKKKLM 117 (334)
Q Consensus 62 ~p~lkkg~WT~EED~~Ll~~v~~~G-~~W~~Ia~~l~gRt~~qcr~RW~~~Lr~~ik 117 (334)
+|.+++++||+|||++|+++|.+|| ++|..||..|++|++.|||+||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 5789999999999999999999999 6999999999999999999999999998764
No 19
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.66 E-value=1.1e-16 Score=122.29 Aligned_cols=65 Identities=23% Similarity=0.296 Sum_probs=60.2
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHHHHhHHHhhhCCCCCCCC
Q 043557 61 LRPDLRHASFAPHEEEIIINLHKAIGSRWSLIAQQLPGRTDNDVKNFWNTKLKKKLMKLGIDPITH 126 (334)
Q Consensus 61 L~p~lkkg~WT~EED~~Ll~~v~~~G~~W~~Ia~~l~gRt~~qcr~RW~~~Lr~~ikrg~~t~~E~ 126 (334)
.+|.+++++||+|||++|+++|.+||.+|..||..|++||+.+||+||+++|++.++. ++.+++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~~ 67 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKETP 67 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCcc
Confidence 5789999999999999999999999999999999999999999999999999999888 6666554
No 20
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.65 E-value=1.4e-16 Score=120.66 Aligned_cols=63 Identities=21% Similarity=0.262 Sum_probs=57.9
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhhcCC--CCCHHHHHHHHHHHhHHHhhhCCCC
Q 043557 60 YLRPDLRHASFAPHEEEIIINLHKAIG-SRWSLIAQQLP--GRTDNDVKNFWNTKLKKKLMKLGID 122 (334)
Q Consensus 60 ~L~p~lkkg~WT~EED~~Ll~~v~~~G-~~W~~Ia~~l~--gRt~~qcr~RW~~~Lr~~ikrg~~t 122 (334)
...+..++++||+|||++|+.+|.+|| ++|..||..|+ +||+.|||+||.++|+|.+.++..+
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 346778999999999999999999999 79999999998 9999999999999999999887653
No 21
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.64 E-value=2.7e-17 Score=137.62 Aligned_cols=83 Identities=18% Similarity=0.272 Sum_probs=78.1
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccc----CCcccccccccccccccC-----CCCCCC-CCCHHHHHH
Q 043557 8 DKSNVKRGLWTPEEDAKLLAHVANHGTGNWTLVPKKA----GLNRCGKSCRLRWTNYLR-----PDLRHA-SFAPHEEEI 77 (334)
Q Consensus 8 ~kp~lkkg~WT~EED~~L~~lv~k~g~~~W~~IA~~l----~~~Rt~~QCr~Rw~~~L~-----p~lkkg-~WT~EED~~ 77 (334)
.++..++++||+|||+.|+++|.+||.++|..|++.+ + +||..+|++||.++++ |.+++| +|++||+.+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r 89 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR 89 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence 4578889999999999999999999999999999885 5 9999999999999998 999999 999999999
Q ss_pred HHHHHHHhCCchhh
Q 043557 78 IINLHKAIGSRWSL 91 (334)
Q Consensus 78 Ll~~v~~~G~~W~~ 91 (334)
|+.+...+|++|..
T Consensus 90 v~~~h~~~gn~~~~ 103 (121)
T 2juh_A 90 VLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHccchhc
Confidence 99999999999987
No 22
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=4.1e-17 Score=120.17 Aligned_cols=58 Identities=28% Similarity=0.539 Sum_probs=55.0
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccccccCCCCC
Q 043557 8 DKSNVKRGLWTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLR 66 (334)
Q Consensus 8 ~kp~lkkg~WT~EED~~L~~lv~k~g~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lk 66 (334)
..|.+++++||+|||++|+++|.+||..+|..||+.|+ +||+.||+.||.++|+|.++
T Consensus 2 s~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 2 SSGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp CSCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 35889999999999999999999999889999999999 99999999999999999875
No 23
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.63 E-value=2.1e-16 Score=113.16 Aligned_cols=50 Identities=30% Similarity=0.658 Sum_probs=47.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-chhhhhhcCCCCCHHHHHHHHHHHhHH
Q 043557 65 LRHASFAPHEEEIIINLHKAIGS-RWSLIAQQLPGRTDNDVKNFWNTKLKK 114 (334)
Q Consensus 65 lkkg~WT~EED~~Ll~~v~~~G~-~W~~Ia~~l~gRt~~qcr~RW~~~Lr~ 114 (334)
+++|+||+|||++|+++|.+||. +|..||..|++||+++||+||.++|+|
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999995 799999999999999999999999987
No 24
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.63 E-value=2.1e-16 Score=112.99 Aligned_cols=51 Identities=29% Similarity=0.571 Sum_probs=47.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-chhhhhhcCCCCCHHHHHHHHHHHhHHH
Q 043557 65 LRHASFAPHEEEIIINLHKAIGS-RWSLIAQQLPGRTDNDVKNFWNTKLKKK 115 (334)
Q Consensus 65 lkkg~WT~EED~~Ll~~v~~~G~-~W~~Ia~~l~gRt~~qcr~RW~~~Lr~~ 115 (334)
+++++||+|||.+|+++|.+||. +|..||..|++|++.||++||.++|+|.
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 47899999999999999999996 9999999999999999999999999873
No 25
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.63 E-value=7.3e-17 Score=115.53 Aligned_cols=52 Identities=40% Similarity=0.859 Sum_probs=49.8
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccccccCCC
Q 043557 12 VKRGLWTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPD 64 (334)
Q Consensus 12 lkkg~WT~EED~~L~~lv~k~g~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~ 64 (334)
+++|+||+|||++|+++|.+||..+|..||+.|+ +|++.||+.||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5799999999999999999999989999999998 999999999999999984
No 26
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.62 E-value=1.4e-16 Score=133.52 Aligned_cols=79 Identities=22% Similarity=0.309 Sum_probs=73.0
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCcccccccc----CCccccccccccccccc-----CCCCCCCCCCHHH-HHHH
Q 043557 9 KSNVKRGLWTPEEDAKLLAHVANHGTGNWTLVPKKA----GLNRCGKSCRLRWTNYL-----RPDLRHASFAPHE-EEII 78 (334)
Q Consensus 9 kp~lkkg~WT~EED~~L~~lv~k~g~~~W~~IA~~l----~~~Rt~~QCr~Rw~~~L-----~p~lkkg~WT~EE-D~~L 78 (334)
....++++||+|||+.|+++|++||.++|..|++.+ + +||..||++||.+++ +|.+++|.|+++| +.+|
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v 104 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV 104 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence 456778999999999999999999999999999874 5 999999999999999 8999999999999 8999
Q ss_pred HHHHHHhCCc
Q 043557 79 INLHKAIGSR 88 (334)
Q Consensus 79 l~~v~~~G~~ 88 (334)
+.+...||++
T Consensus 105 ~~~h~~~g~~ 114 (122)
T 2roh_A 105 LAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHhhH
Confidence 9999999954
No 27
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.61 E-value=1.4e-16 Score=133.39 Aligned_cols=82 Identities=17% Similarity=0.239 Sum_probs=73.9
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhC-Cchhhhhhc----CCCCCHHHHHHHHHHHhH-----HHhhhC-CCCCCCCchH
Q 043557 61 LRPDLRHASFAPHEEEIIINLHKAIG-SRWSLIAQQ----LPGRTDNDVKNFWNTKLK-----KKLMKL-GIDPITHKPF 129 (334)
Q Consensus 61 L~p~lkkg~WT~EED~~Ll~~v~~~G-~~W~~Ia~~----l~gRt~~qcr~RW~~~Lr-----~~ikrg-~~t~~E~~~l 129 (334)
+.+..++++||+|||+.|+++|++|| ++|+.|+.. +++||+.+|++||+++++ |.++++ .|.+++...|
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv 90 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV 90 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 55678899999999999999999999 599999997 489999999999999999 889998 7777788899
Q ss_pred HHHHHhhCCCCCC
Q 043557 130 SQIFSDYGNISGL 142 (334)
Q Consensus 130 ~~l~~~~Gn~~~l 142 (334)
+.+|..+||.+.-
T Consensus 91 ~~~h~~~gn~~~~ 103 (121)
T 2juh_A 91 LAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHccchhc
Confidence 9999999996553
No 28
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.61 E-value=5.4e-16 Score=129.89 Aligned_cols=81 Identities=17% Similarity=0.199 Sum_probs=72.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-Cchhhhhhc----CCCCCHHHHHHHHHHHh-----HHHhhhCCCCCCC-CchHH
Q 043557 62 RPDLRHASFAPHEEEIIINLHKAIG-SRWSLIAQQ----LPGRTDNDVKNFWNTKL-----KKKLMKLGIDPIT-HKPFS 130 (334)
Q Consensus 62 ~p~lkkg~WT~EED~~Ll~~v~~~G-~~W~~Ia~~----l~gRt~~qcr~RW~~~L-----r~~ikrg~~t~~E-~~~l~ 130 (334)
....++++||+|||+.|+++|++|| ++|+.|++. +++||+.+|++||++++ .|.++++.|+++| ...|+
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~ 105 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL 105 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence 3456789999999999999999999 699999986 38999999999999999 6889999999999 68899
Q ss_pred HHHHhhCCCCCC
Q 043557 131 QIFSDYGNISGL 142 (334)
Q Consensus 131 ~l~~~~Gn~~~l 142 (334)
.+|..+||...-
T Consensus 106 ~~h~~~g~~~~~ 117 (122)
T 2roh_A 106 AAQAYWSVDSSG 117 (122)
T ss_dssp HHHHHHHSSCSC
T ss_pred HHHHHHhhHHhh
Confidence 999999996543
No 29
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.60 E-value=9.9e-17 Score=114.74 Aligned_cols=52 Identities=35% Similarity=0.728 Sum_probs=48.6
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccccccCCC
Q 043557 12 VKRGLWTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPD 64 (334)
Q Consensus 12 lkkg~WT~EED~~L~~lv~k~g~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~ 64 (334)
+++++||+|||++|+++|.+||.++|..||+.|+ +|++.||+.||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5789999999999999999999999999999999 999999999999999985
No 30
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.59 E-value=2.2e-16 Score=119.48 Aligned_cols=64 Identities=27% Similarity=0.399 Sum_probs=59.3
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccCC-cccccccccccccccCCCCCCCCCC
Q 043557 8 DKSNVKRGLWTPEEDAKLLAHVANHGTGNWTLVPKKAGL-NRCGKSCRLRWTNYLRPDLRHASFA 71 (334)
Q Consensus 8 ~kp~lkkg~WT~EED~~L~~lv~k~g~~~W~~IA~~l~~-~Rt~~QCr~Rw~~~L~p~lkkg~WT 71 (334)
.+|..++++||+|||++|+++|.+||.++|..||..|+. +|++.||++||.++|+|.+.++..+
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 467889999999999999999999998899999999976 8999999999999999999988764
No 31
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.58 E-value=1.4e-15 Score=113.82 Aligned_cols=52 Identities=21% Similarity=0.415 Sum_probs=47.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CchhhhhhcCC--CCCHHHHHHHHHHHhHHHh
Q 043557 65 LRHASFAPHEEEIIINLHKAIG-SRWSLIAQQLP--GRTDNDVKNFWNTKLKKKL 116 (334)
Q Consensus 65 lkkg~WT~EED~~Ll~~v~~~G-~~W~~Ia~~l~--gRt~~qcr~RW~~~Lr~~i 116 (334)
.++++||+|||++|+++|.+|| ++|..||+.++ +|++.|||+||++++++.+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 5789999999999999999999 68999999865 9999999999999999865
No 32
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.58 E-value=1.8e-15 Score=108.76 Aligned_cols=49 Identities=22% Similarity=0.329 Sum_probs=46.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-CchhhhhhcCC--CCCHHHHHHHHHHHhHH
Q 043557 66 RHASFAPHEEEIIINLHKAIG-SRWSLIAQQLP--GRTDNDVKNFWNTKLKK 114 (334)
Q Consensus 66 kkg~WT~EED~~Ll~~v~~~G-~~W~~Ia~~l~--gRt~~qcr~RW~~~Lr~ 114 (334)
++++||+|||++|+++|.+|| ++|..||..++ +||+.+|++||.++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 589999999999999999999 79999999998 99999999999999863
No 33
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2e-15 Score=115.91 Aligned_cols=62 Identities=18% Similarity=0.101 Sum_probs=57.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC------CchhhhhhcCCCCCHHHHHHHHHHHhHHHhhhCCCCC
Q 043557 62 RPDLRHASFAPHEEEIIINLHKAIG------SRWSLIAQQLPGRTDNDVKNFWNTKLKKKLMKLGIDP 123 (334)
Q Consensus 62 ~p~lkkg~WT~EED~~Ll~~v~~~G------~~W~~Ia~~l~gRt~~qcr~RW~~~Lr~~ikrg~~t~ 123 (334)
+|.+++++||+|||++|+++|.+|| .+|..||..|++||..|||+||+++|.+.++.|...+
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~~~p 70 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGIPVS 70 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 5789999999999999999999999 6899999999999999999999999999988876544
No 34
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.57 E-value=2.1e-15 Score=111.22 Aligned_cols=53 Identities=15% Similarity=0.293 Sum_probs=50.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHHHHHhHH
Q 043557 62 RPDLRHASFAPHEEEIIINLHKAIG-SRWSLIAQQLPGRTDNDVKNFWNTKLKK 114 (334)
Q Consensus 62 ~p~lkkg~WT~EED~~Ll~~v~~~G-~~W~~Ia~~l~gRt~~qcr~RW~~~Lr~ 114 (334)
.+.+++++||+|||++|+++|++|| ++|..||+.+++|+++|||+||.++|.+
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 4678999999999999999999999 8999999999999999999999999864
No 35
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=1.1e-15 Score=112.83 Aligned_cols=56 Identities=23% Similarity=0.484 Sum_probs=52.5
Q ss_pred CCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccccccCCCC
Q 043557 9 KSNVKRGLWTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDL 65 (334)
Q Consensus 9 kp~lkkg~WT~EED~~L~~lv~k~g~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~l 65 (334)
.+.+.+++||+|||++|+++|.+||.++|..||+.|+ +||+.||+.||.++|.++.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCCC
Confidence 4788999999999999999999999889999999999 9999999999999998754
No 36
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.53 E-value=9e-16 Score=114.95 Aligned_cols=57 Identities=30% Similarity=0.492 Sum_probs=49.8
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCccccccccC-CcccccccccccccccCCCCC
Q 043557 10 SNVKRGLWTPEEDAKLLAHVANHGTGNWTLVPKKAG-LNRCGKSCRLRWTNYLRPDLR 66 (334)
Q Consensus 10 p~lkkg~WT~EED~~L~~lv~k~g~~~W~~IA~~l~-~~Rt~~QCr~Rw~~~L~p~lk 66 (334)
...++++||+|||++|+++|.+||.++|..||+.++ .+||+.||++||.++++|+++
T Consensus 7 ~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 7 NITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 446789999999999999999999999999999864 389999999999999998864
No 37
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.51 E-value=1.5e-14 Score=106.12 Aligned_cols=50 Identities=18% Similarity=0.401 Sum_probs=46.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhhcCC-CCCHHHHHHHHHHHh
Q 043557 63 PDLRHASFAPHEEEIIINLHKAIG-SRWSLIAQQLP-GRTDNDVKNFWNTKL 112 (334)
Q Consensus 63 p~lkkg~WT~EED~~Ll~~v~~~G-~~W~~Ia~~l~-gRt~~qcr~RW~~~L 112 (334)
..+.+++||+|||.+|+++|++|| ++|..||+.++ +||++|||.||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 346789999999999999999999 89999999998 999999999999875
No 38
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=2.9e-15 Score=114.95 Aligned_cols=62 Identities=21% Similarity=0.298 Sum_probs=57.3
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCC-----CCccccccccCCcccccccccccccccCCCCCCCCC
Q 043557 8 DKSNVKRGLWTPEEDAKLLAHVANHGT-----GNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLRHASF 70 (334)
Q Consensus 8 ~kp~lkkg~WT~EED~~L~~lv~k~g~-----~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkkg~W 70 (334)
.+|.+.+++||+|||++|+++|.+||. .+|..||+.|+ +||..||+.||++||.+.++.|..
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~~ 68 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGIP 68 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCCC
Confidence 479999999999999999999999996 68999999999 999999999999999988877754
No 39
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.48 E-value=4e-14 Score=115.78 Aligned_cols=76 Identities=17% Similarity=0.210 Sum_probs=67.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CchhhhhhcC----CCCCHHHHHHHHHHHhH-----HHhhhCCCCCCCCch-HHH
Q 043557 63 PDLRHASFAPHEEEIIINLHKAIG-SRWSLIAQQL----PGRTDNDVKNFWNTKLK-----KKLMKLGIDPITHKP-FSQ 131 (334)
Q Consensus 63 p~lkkg~WT~EED~~Ll~~v~~~G-~~W~~Ia~~l----~gRt~~qcr~RW~~~Lr-----~~ikrg~~t~~E~~~-l~~ 131 (334)
+..++++||+|||+.|+++|++|| ++|+.|++.+ ++||+.+|++||+++++ |.+++|.-.|.+--. ++.
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv~~ 88 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRVLN 88 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHHHH
Confidence 457899999999999999999999 5999999965 89999999999999995 889999888877665 777
Q ss_pred HHHhhCC
Q 043557 132 IFSDYGN 138 (334)
Q Consensus 132 l~~~~Gn 138 (334)
|++.+|+
T Consensus 89 ~~~~~~~ 95 (105)
T 2aje_A 89 AHGYWTQ 95 (105)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888776
No 40
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.5e-15 Score=113.86 Aligned_cols=60 Identities=23% Similarity=0.336 Sum_probs=54.7
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccccccCCCCCCCC
Q 043557 7 CDKSNVKRGLWTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLRHAS 69 (334)
Q Consensus 7 ~~kp~lkkg~WT~EED~~L~~lv~k~g~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkkg~ 69 (334)
..+|.+++++||+|||++|+++|..||. +|..||+ ++ +||+.||+.||.++|+|.++++.
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCCC
Confidence 3579999999999999999999999999 9999999 76 79999999999999998776653
No 41
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.46 E-value=9.1e-15 Score=107.22 Aligned_cols=52 Identities=23% Similarity=0.427 Sum_probs=47.9
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCCCCccccccccCCccccccccccccccc
Q 043557 10 SNVKRGLWTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYL 61 (334)
Q Consensus 10 p~lkkg~WT~EED~~L~~lv~k~g~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L 61 (334)
..+.+++||+|||++|+++|.+||.++|..||+.|+.+||+.||+.||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 4566899999999999999999998899999999987899999999998875
No 42
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.45 E-value=9.5e-15 Score=104.99 Aligned_cols=50 Identities=32% Similarity=0.530 Sum_probs=46.6
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCccccccccCC-cccccccccccccccC
Q 043557 13 KRGLWTPEEDAKLLAHVANHGTGNWTLVPKKAGL-NRCGKSCRLRWTNYLR 62 (334)
Q Consensus 13 kkg~WT~EED~~L~~lv~k~g~~~W~~IA~~l~~-~Rt~~QCr~Rw~~~L~ 62 (334)
++++||+|||++|+++|.+||.++|..||..++. +||+.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5899999999999999999998899999999976 6999999999999875
No 43
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.14 E-value=1.3e-14 Score=115.27 Aligned_cols=56 Identities=23% Similarity=0.277 Sum_probs=53.1
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHHHHhHHH
Q 043557 60 YLRPDLRHASFAPHEEEIIINLHKAIGSRWSLIAQQLPGRTDNDVKNFWNTKLKKK 115 (334)
Q Consensus 60 ~L~p~lkkg~WT~EED~~Ll~~v~~~G~~W~~Ia~~l~gRt~~qcr~RW~~~Lr~~ 115 (334)
.++|.+++|+||+|||.+|+++|.+||.+|..||..|+|||+.+|++||+++|+..
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 56789999999999999999999999999999999999999999999999999864
No 44
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.41 E-value=1.7e-14 Score=110.07 Aligned_cols=58 Identities=22% Similarity=0.325 Sum_probs=54.5
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccccccCCCCCC
Q 043557 8 DKSNVKRGLWTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLRH 67 (334)
Q Consensus 8 ~kp~lkkg~WT~EED~~L~~lv~k~g~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk 67 (334)
..|.+++++||+|||++|+++|.+||. +|..||+.|+ +||..||+.||.++|.+.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 568999999999999999999999999 9999999999 999999999999998876665
No 45
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.41 E-value=2.2e-13 Score=107.02 Aligned_cols=68 Identities=19% Similarity=0.271 Sum_probs=55.9
Q ss_pred CCCCHHHHHHHHHHHHHhC-Cchhhhhhc----CCCCCHHHHHHHHHHHhH-----HHhhhCCCCCCCC-chHHHHHHh
Q 043557 68 ASFAPHEEEIIINLHKAIG-SRWSLIAQQ----LPGRTDNDVKNFWNTKLK-----KKLMKLGIDPITH-KPFSQIFSD 135 (334)
Q Consensus 68 g~WT~EED~~Ll~~v~~~G-~~W~~Ia~~----l~gRt~~qcr~RW~~~Lr-----~~ikrg~~t~~E~-~~l~~l~~~ 135 (334)
++||+|||+.|+++|++|| ++|+.|++. +++||+.+||+||+++++ |.+++|.-.|.+. ..++.+++.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999 599999995 799999999999999994 6677776544443 556666654
No 46
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.37 E-value=1.5e-13 Score=126.46 Aligned_cols=73 Identities=23% Similarity=0.383 Sum_probs=63.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCc------hhhhhhcCCCCCHHHHHHHHHHHhHHHhhhCCCCCCCCchHHHHHHhh
Q 043557 63 PDLRHASFAPHEEEIIINLHKAIGSR------WSLIAQQLPGRTDNDVKNFWNTKLKKKLMKLGIDPITHKPFSQIFSDY 136 (334)
Q Consensus 63 p~lkkg~WT~EED~~Ll~~v~~~G~~------W~~Ia~~l~gRt~~qcr~RW~~~Lr~~ikrg~~t~~E~~~l~~l~~~~ 136 (334)
+.+++++||+|||++|+++|++||.+ |..||+.|+|||+++||+||+++|++.+... |+.+++..|+..+.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~v-y~~ded~~Li~d~~-- 80 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV-YEVDKFGKLVRDDD-- 80 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCE-ECBCTTSCBCBCTT--
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccc-cccCcchhhhhccC--
Confidence 45789999999999999999999864 9999999999999999999999999999865 99999888877666
Q ss_pred CC
Q 043557 137 GN 138 (334)
Q Consensus 137 Gn 138 (334)
||
T Consensus 81 Gn 82 (246)
T 1ign_A 81 GN 82 (246)
T ss_dssp SC
T ss_pred CC
Confidence 77
No 47
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.36 E-value=2.7e-13 Score=110.81 Aligned_cols=81 Identities=23% Similarity=0.262 Sum_probs=68.3
Q ss_pred CCCCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccC---Cccccccccccccccc-----CCCCCCCCCCHHHHHH
Q 043557 6 CCDKSNVKRGLWTPEEDAKLLAHVANHGTGNWTLVPKKAG---LNRCGKSCRLRWTNYL-----RPDLRHASFAPHEEEI 77 (334)
Q Consensus 6 ~~~kp~lkkg~WT~EED~~L~~lv~k~g~~~W~~IA~~l~---~~Rt~~QCr~Rw~~~L-----~p~lkkg~WT~EED~~ 77 (334)
...++..++++||+|||+.|+++|.+||.++|..|++.++ .+||..+|++||.+++ +|.+++|.=+|+|-..
T Consensus 5 ~~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~ 84 (105)
T 2aje_A 5 LEDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLN 84 (105)
T ss_dssp ----CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHH
T ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHH
Confidence 3456788999999999999999999999999999999762 3999999999999998 7999999988888765
Q ss_pred -HHHHHHHhC
Q 043557 78 -IINLHKAIG 86 (334)
Q Consensus 78 -Ll~~v~~~G 86 (334)
++++...+|
T Consensus 85 rv~~~~~~~~ 94 (105)
T 2aje_A 85 RVLNAHGYWT 94 (105)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 777766655
No 48
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.34 E-value=2.2e-13 Score=104.55 Aligned_cols=61 Identities=21% Similarity=0.302 Sum_probs=48.3
Q ss_pred CCCCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccccccCCCCCC
Q 043557 3 RPPCCDKSNVKRGLWTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLRH 67 (334)
Q Consensus 3 R~~~~~kp~lkkg~WT~EED~~L~~lv~k~g~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkk 67 (334)
|..-..+|.+++|+||+|||++|+++|.+||. .|..||+.| +||+.||+.||.. |....+.
T Consensus 12 ~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l--gRt~~q~knRw~~-L~~~~~~ 72 (73)
T 2llk_A 12 ENLYFQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL--GRSASSVKDRCRL-MKDTCNT 72 (73)
T ss_dssp -------CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH--TSCHHHHHHHHHH-CSCCCSC
T ss_pred ceeeecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh--CCCHHHHHHHHHH-HHHHccC
Confidence 44556789999999999999999999999998 699999999 7999999999974 5444443
No 49
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.32 E-value=5e-13 Score=104.97 Aligned_cols=69 Identities=20% Similarity=0.354 Sum_probs=59.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccc----cCCccccccccccccccc-----CCCCCCC-CCCHHHHHHHHHHHHH
Q 043557 15 GLWTPEEDAKLLAHVANHGTGNWTLVPKK----AGLNRCGKSCRLRWTNYL-----RPDLRHA-SFAPHEEEIIINLHKA 84 (334)
Q Consensus 15 g~WT~EED~~L~~lv~k~g~~~W~~IA~~----l~~~Rt~~QCr~Rw~~~L-----~p~lkkg-~WT~EED~~Ll~~v~~ 84 (334)
++||+|||+.|+++|.+||.++|..|++. |+ +||..+|++||.+++ +|.+++| +..+++..+++.+...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999999999985 66 999999999999988 6877766 6777777778777643
No 50
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.31 E-value=9.8e-13 Score=102.34 Aligned_cols=49 Identities=8% Similarity=0.213 Sum_probs=45.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHHHH
Q 043557 63 PDLRHASFAPHEEEIIINLHKAIGSRWSLIAQQLPGRTDNDVKNFWNTK 111 (334)
Q Consensus 63 p~lkkg~WT~EED~~Ll~~v~~~G~~W~~Ia~~l~gRt~~qcr~RW~~~ 111 (334)
....+++||+|||.+|+++|++||++|..||+++++||..||+.||.++
T Consensus 14 ~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 14 GASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SSCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred ccccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 3457899999999999999999999999999999999999999999876
No 51
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.31 E-value=2.1e-12 Score=99.11 Aligned_cols=51 Identities=10% Similarity=0.250 Sum_probs=47.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC----CchhhhhhcCCCCCHHHHHHHHHHHhH
Q 043557 63 PDLRHASFAPHEEEIIINLHKAIG----SRWSLIAQQLPGRTDNDVKNFWNTKLK 113 (334)
Q Consensus 63 p~lkkg~WT~EED~~Ll~~v~~~G----~~W~~Ia~~l~gRt~~qcr~RW~~~Lr 113 (334)
+...+++||.|||.+|+.++..|| .+|.+||..|||||.++|++||.++++
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 457889999999999999999999 579999999999999999999998764
No 52
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.28 E-value=8.1e-13 Score=102.80 Aligned_cols=52 Identities=23% Similarity=0.417 Sum_probs=48.6
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccccc
Q 043557 7 CDKSNVKRGLWTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNY 60 (334)
Q Consensus 7 ~~kp~lkkg~WT~EED~~L~~lv~k~g~~~W~~IA~~l~~~Rt~~QCr~Rw~~~ 60 (334)
..++...+++||+|||++|+++|.+|| ++|..||++|+ +||..||+.||.++
T Consensus 11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 456777899999999999999999999 69999999999 99999999999998
No 53
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.86 E-value=9.6e-13 Score=104.46 Aligned_cols=55 Identities=24% Similarity=0.478 Sum_probs=51.6
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccccccCC
Q 043557 7 CDKSNVKRGLWTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRP 63 (334)
Q Consensus 7 ~~kp~lkkg~WT~EED~~L~~lv~k~g~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p 63 (334)
...|.+.+|+||+|||++|+++|..||. +|..||..|+ +||..||+.||.++|..
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 4678999999999999999999999999 8999999999 99999999999998764
No 54
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.19 E-value=2.5e-12 Score=98.65 Aligned_cols=55 Identities=11% Similarity=0.285 Sum_probs=50.0
Q ss_pred CCCCCCccCCCCHHHHHHHHHHHHHhCC---CCccccccccCCcccccccccccccccC
Q 043557 7 CDKSNVKRGLWTPEEDAKLLAHVANHGT---GNWTLVPKKAGLNRCGKSCRLRWTNYLR 62 (334)
Q Consensus 7 ~~kp~lkkg~WT~EED~~L~~lv~k~g~---~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~ 62 (334)
-.++...+++||+|||++|++++.+||. .+|..||+.|| +||..||+.||.+++.
T Consensus 11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4678889999999999999999999993 48999999999 9999999999998764
No 55
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.13 E-value=6.8e-11 Score=87.56 Aligned_cols=50 Identities=18% Similarity=0.322 Sum_probs=45.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCchhhhh---hcCCCCCHHHHHHHHHHHhHH
Q 043557 65 LRHASFAPHEEEIIINLHKAIGSRWSLIA---QQLPGRTDNDVKNFWNTKLKK 114 (334)
Q Consensus 65 lkkg~WT~EED~~Ll~~v~~~G~~W~~Ia---~~l~gRt~~qcr~RW~~~Lr~ 114 (334)
-++.+||+|||+.|++.|++||.+|..|+ .++++||...+++||+++.+.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 36789999999999999999999999999 466899999999999988764
No 56
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.05 E-value=2e-10 Score=91.91 Aligned_cols=49 Identities=18% Similarity=0.401 Sum_probs=44.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CchhhhhhcCCCCCHHHHHHHHHHHhHH
Q 043557 66 RHASFAPHEEEIIINLHKAIG----SRWSLIAQQLPGRTDNDVKNFWNTKLKK 114 (334)
Q Consensus 66 kkg~WT~EED~~Ll~~v~~~G----~~W~~Ia~~l~gRt~~qcr~RW~~~Lr~ 114 (334)
.+++||.|||.+|+.++..|| .+|..||..+||||.++|++||.+++..
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~d 59 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED 59 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 467999999999999999996 5799999999999999999999988755
No 57
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.86 E-value=2.5e-10 Score=91.34 Aligned_cols=48 Identities=13% Similarity=0.293 Sum_probs=43.1
Q ss_pred ccCCCCHHHHHHHHHHHHHhC---CCCccccccccCCccccccccccccccc
Q 043557 13 KRGLWTPEEDAKLLAHVANHG---TGNWTLVPKKAGLNRCGKSCRLRWTNYL 61 (334)
Q Consensus 13 kkg~WT~EED~~L~~lv~k~g---~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L 61 (334)
.+++||+|||++|.+++.+|+ ...|..||+.|| +||..||+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 367899999999999999998 457999999999 999999999998764
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=4.4e-09 Score=77.55 Aligned_cols=47 Identities=19% Similarity=0.212 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHHHHh
Q 043557 66 RHASFAPHEEEIIINLHKAIGSRWSLIAQQLPGRTDNDVKNFWNTKL 112 (334)
Q Consensus 66 kkg~WT~EED~~Ll~~v~~~G~~W~~Ia~~l~gRt~~qcr~RW~~~L 112 (334)
..++||+||+.++++++..||.+|..||..|++|+..+|+.+|....
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 45799999999999999999999999999999999999999997654
No 59
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.71 E-value=1.5e-08 Score=80.96 Aligned_cols=66 Identities=15% Similarity=0.226 Sum_probs=59.4
Q ss_pred cccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhhcC-----CCCCHHHHHHHHHHHhHHHhhhCC
Q 043557 51 KSCRLRWTNYLRPDLRHASFAPHEEEIIINLHKAIGSRWSLIAQQL-----PGRTDNDVKNFWNTKLKKKLMKLG 120 (334)
Q Consensus 51 ~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~~v~~~G~~W~~Ia~~l-----~gRt~~qcr~RW~~~Lr~~ikrg~ 120 (334)
.-+.++|.++|.+ ++||.||+..|++++++||.+|..|+..+ ++|+...+++||..+.+..++..+
T Consensus 18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~ 88 (93)
T 3hm5_A 18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4678899999976 89999999999999999999999999988 489999999999999988877553
No 60
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.64 E-value=5.6e-09 Score=77.28 Aligned_cols=49 Identities=18% Similarity=0.240 Sum_probs=44.1
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccc---cccCCcccccccccccccccC
Q 043557 12 VKRGLWTPEEDAKLLAHVANHGTGNWTLVP---KKAGLNRCGKSCRLRWTNYLR 62 (334)
Q Consensus 12 lkkg~WT~EED~~L~~lv~k~g~~~W~~IA---~~l~~~Rt~~QCr~Rw~~~L~ 62 (334)
..+.+||+|||+.|+++|++||. +|..|+ ..+. +||...+.+||.++..
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence 36889999999999999999999 999999 5666 9999999999988654
No 61
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.58 E-value=5.3e-08 Score=74.29 Aligned_cols=50 Identities=18% Similarity=0.241 Sum_probs=44.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC----CchhhhhhcCCCCCHHHHHHHHHHHhHH
Q 043557 64 DLRHASFAPHEEEIIINLHKAIG----SRWSLIAQQLPGRTDNDVKNFWNTKLKK 114 (334)
Q Consensus 64 ~lkkg~WT~EED~~Ll~~v~~~G----~~W~~Ia~~l~gRt~~qcr~RW~~~Lr~ 114 (334)
..+.+.||.|||.+|.+++.+|+ .+|.+||..+ ||+..+|+.||..+...
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 45678999999999999999997 5699999998 99999999999877654
No 62
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=1.9e-08 Score=74.14 Aligned_cols=51 Identities=16% Similarity=0.246 Sum_probs=45.0
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccccc
Q 043557 8 DKSNVKRGLWTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNY 60 (334)
Q Consensus 8 ~kp~lkkg~WT~EED~~L~~lv~k~g~~~W~~IA~~l~~~Rt~~QCr~Rw~~~ 60 (334)
++.....++||+||++++.+++.+||. +|..||..|+ +||..||..+|...
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l~-~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYLE-RKSVPDCVLYYYLT 56 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHCT-TSCHHHHHHHHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 444456789999999999999999997 9999999999 99999999998654
No 63
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.55 E-value=7.2e-08 Score=70.77 Aligned_cols=47 Identities=17% Similarity=0.379 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCc-hhhhhh-cCCCCCHHHHHHHHHHHhH
Q 043557 67 HASFAPHEEEIIINLHKAI--------GSR-WSLIAQ-QLPGRTDNDVKNFWNTKLK 113 (334)
Q Consensus 67 kg~WT~EED~~Ll~~v~~~--------G~~-W~~Ia~-~l~gRt~~qcr~RW~~~Lr 113 (334)
|.+||+|||..|+++|.+| |+. |..+++ .++++|-.+||+||.+.|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 433 999999 7899999999999998875
No 64
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.48 E-value=1.3e-07 Score=86.35 Aligned_cols=49 Identities=16% Similarity=0.325 Sum_probs=46.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHHHHhHH
Q 043557 66 RHASFAPHEEEIIINLHKAIGSRWSLIAQQLPGRTDNDVKNFWNTKLKK 114 (334)
Q Consensus 66 kkg~WT~EED~~Ll~~v~~~G~~W~~Ia~~l~gRt~~qcr~RW~~~Lr~ 114 (334)
..++||+||+.++++++.+||.+|..||+.+++||..+|+++|+++.++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999988764
No 65
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.40 E-value=3.4e-08 Score=75.35 Aligned_cols=51 Identities=14% Similarity=0.252 Sum_probs=44.0
Q ss_pred CCCccCCCCHHHHHHHHHHHHHhCC---CCccccccccCCcccccccccccccccC
Q 043557 10 SNVKRGLWTPEEDAKLLAHVANHGT---GNWTLVPKKAGLNRCGKSCRLRWTNYLR 62 (334)
Q Consensus 10 p~lkkg~WT~EED~~L~~lv~k~g~---~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~ 62 (334)
...+.+.||.|||++|.+++.+|+. ..|..||+.+ +||..+|+.||..+..
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 4456789999999999999999984 4699999998 5999999999986643
No 66
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.35 E-value=2.2e-07 Score=93.41 Aligned_cols=46 Identities=17% Similarity=0.334 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHHHHhH
Q 043557 68 ASFAPHEEEIIINLHKAIGSRWSLIAQQLPGRTDNDVKNFWNTKLK 113 (334)
Q Consensus 68 g~WT~EED~~Ll~~v~~~G~~W~~Ia~~l~gRt~~qcr~RW~~~Lr 113 (334)
.+||.||-.++++++.+||.+|..|++.+..|+..|||.+|.++.+
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999976544
No 67
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.25 E-value=1.3e-06 Score=66.78 Aligned_cols=48 Identities=10% Similarity=0.207 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CchhhhhhcCCCCCHHHHHHHHHHHhH
Q 043557 66 RHASFAPHEEEIIINLHKAIG----SRWSLIAQQLPGRTDNDVKNFWNTKLK 113 (334)
Q Consensus 66 kkg~WT~EED~~Ll~~v~~~G----~~W~~Ia~~l~gRt~~qcr~RW~~~Lr 113 (334)
..+.||.||+.+|..++..|+ .+|..||..++||+..+|+.||..+++
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 345899999999999999997 469999999999999999999987644
No 68
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.25 E-value=1.6e-07 Score=71.82 Aligned_cols=48 Identities=25% Similarity=0.459 Sum_probs=43.1
Q ss_pred cCCCCHHHHHHHHHHHHHhCC---CCccccccccCCcccccccccccccccC
Q 043557 14 RGLWTPEEDAKLLAHVANHGT---GNWTLVPKKAGLNRCGKSCRLRWTNYLR 62 (334)
Q Consensus 14 kg~WT~EED~~L~~lv~k~g~---~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~ 62 (334)
...||.+|+++|.+++..|+. +.|..||..+| +||..+|+.||..++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence 357999999999999999975 47999999999 8999999999987754
No 69
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.15 E-value=3.2e-07 Score=67.30 Aligned_cols=48 Identities=25% Similarity=0.381 Sum_probs=42.6
Q ss_pred cCCCCHHHHHHHHHHHHHh--------CCCCcccccc-ccCCcccccccccccccccC
Q 043557 14 RGLWTPEEDAKLLAHVANH--------GTGNWTLVPK-KAGLNRCGKSCRLRWTNYLR 62 (334)
Q Consensus 14 kg~WT~EED~~L~~lv~k~--------g~~~W~~IA~-~l~~~Rt~~QCr~Rw~~~L~ 62 (334)
+.+||+|||+.|++.|.+| |..-|..+++ .++ ++|-.+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 5689999999999999999 4446999999 787 9999999999998874
No 70
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.11 E-value=6.8e-07 Score=81.67 Aligned_cols=50 Identities=20% Similarity=0.349 Sum_probs=45.7
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccccccC
Q 043557 11 NVKRGLWTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLR 62 (334)
Q Consensus 11 ~lkkg~WT~EED~~L~~lv~k~g~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~ 62 (334)
....++||+||++++++++.+||. +|..||+.++ +||..||+.+|.++..
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 345779999999999999999997 9999999999 9999999999988764
No 71
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.86 E-value=2.9e-05 Score=74.06 Aligned_cols=101 Identities=12% Similarity=0.193 Sum_probs=80.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccCCccccccccc-------ccccc---------------------------
Q 043557 15 GLWTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRL-------RWTNY--------------------------- 60 (334)
Q Consensus 15 g~WT~EED~~L~~lv~k~g~~~W~~IA~~l~~~Rt~~QCr~-------Rw~~~--------------------------- 60 (334)
+.||..|...++.++.+||..+|..||..|+ ++|...++. ||..+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999998 898877644 22110
Q ss_pred ----------------cCCCCCCCCCCHHHHHHHHHHHHHhC----Cchhhhhh------------cCCCCCHHHHHHHH
Q 043557 61 ----------------LRPDLRHASFAPHEEEIIINLHKAIG----SRWSLIAQ------------QLPGRTDNDVKNFW 108 (334)
Q Consensus 61 ----------------L~p~lkkg~WT~EED~~Ll~~v~~~G----~~W~~Ia~------------~l~gRt~~qcr~RW 108 (334)
..+..++..||+|||..|+-++.+|| +.|..|-. ++..||+..+..|.
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 01233456899999999999999999 46999962 33679999999999
Q ss_pred HHHhHHHh
Q 043557 109 NTKLKKKL 116 (334)
Q Consensus 109 ~~~Lr~~i 116 (334)
..+++-..
T Consensus 270 ~tLi~~ie 277 (304)
T 1ofc_X 270 NTLITLIE 277 (304)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98887543
No 72
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.86 E-value=2.9e-06 Score=64.63 Aligned_cols=44 Identities=11% Similarity=0.251 Sum_probs=39.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCC---CccccccccCCcccccccccccc
Q 043557 14 RGLWTPEEDAKLLAHVANHGTG---NWTLVPKKAGLNRCGKSCRLRWT 58 (334)
Q Consensus 14 kg~WT~EED~~L~~lv~k~g~~---~W~~IA~~l~~~Rt~~QCr~Rw~ 58 (334)
.+.||.+|+++|..++..|+.+ .|.+||+.|| |||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 5679999999999999999764 7999999999 999999999985
No 73
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.82 E-value=3.7e-05 Score=56.83 Aligned_cols=49 Identities=12% Similarity=0.225 Sum_probs=44.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCchhhhhh-cCCCCCHHHHHHHHHH
Q 043557 62 RPDLRHASFAPHEEEIIINLHKAIGSRWSLIAQ-QLPGRTDNDVKNFWNT 110 (334)
Q Consensus 62 ~p~lkkg~WT~EED~~Ll~~v~~~G~~W~~Ia~-~l~gRt~~qcr~RW~~ 110 (334)
.|.++...||+||-.+..+++.+||.+|..|++ .+++|+..+|...|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 367788899999999999999999999999999 5899999999988854
No 74
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.62 E-value=1.6e-05 Score=60.49 Aligned_cols=43 Identities=23% Similarity=0.329 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----chhhhhhcCCCCCHHHHHHHHH
Q 043557 67 HASFAPHEEEIIINLHKAIGS----RWSLIAQQLPGRTDNDVKNFWN 109 (334)
Q Consensus 67 kg~WT~EED~~Ll~~v~~~G~----~W~~Ia~~l~gRt~~qcr~RW~ 109 (334)
.++||.||+.+|..++..|+. +|.+||..+|||+...|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999983 6999999999999999998873
No 75
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.52 E-value=0.00016 Score=57.04 Aligned_cols=48 Identities=19% Similarity=0.361 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHHHHHHhCC---chhhhhhcCCCCCHHHHHHHHHHHhHHH
Q 043557 68 ASFAPHEEEIIINLHKAIGS---RWSLIAQQLPGRTDNDVKNFWNTKLKKK 115 (334)
Q Consensus 68 g~WT~EED~~Ll~~v~~~G~---~W~~Ia~~l~gRt~~qcr~RW~~~Lr~~ 115 (334)
-.||.|||..|+..+++-|. .|..||+.|.+|+..++++||+.+++-.
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf 84 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF 84 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 36999999999999999995 6999999999999999999998877643
No 76
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.51 E-value=3.5e-05 Score=56.91 Aligned_cols=49 Identities=16% Similarity=0.165 Sum_probs=44.5
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHHhCCCCcccccc-ccCCcccccccccccc
Q 043557 8 DKSNVKRGLWTPEEDAKLLAHVANHGTGNWTLVPK-KAGLNRCGKSCRLRWT 58 (334)
Q Consensus 8 ~kp~lkkg~WT~EED~~L~~lv~k~g~~~W~~IA~-~l~~~Rt~~QCr~Rw~ 58 (334)
..|.+....||+||-++..+++.+||. +|..|++ .++ +|+..+|..-|.
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY 52 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLP-NKETGELITFYY 52 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCT-TSCHHHHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCcHHHHHHHHh
Confidence 468888899999999999999999999 9999998 588 999999987764
No 77
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.45 E-value=3e-05 Score=58.12 Aligned_cols=44 Identities=16% Similarity=0.368 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHHhCC---chhhhhhcCCCCCHHHHHHHHHHHhH
Q 043557 69 SFAPHEEEIIINLHKAIGS---RWSLIAQQLPGRTDNDVKNFWNTKLK 113 (334)
Q Consensus 69 ~WT~EED~~Ll~~v~~~G~---~W~~Ia~~l~gRt~~qcr~RW~~~Lr 113 (334)
.||.|||..|+..+++-|. .|..||..+ +|+..++.+||..+++
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 6999999999999999996 699999999 9999999999987765
No 78
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.32 E-value=0.00052 Score=54.54 Aligned_cols=53 Identities=15% Similarity=0.226 Sum_probs=47.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhhhhcCC-----CCCHHHHHHHHHHHhHHHhhhC
Q 043557 67 HASFAPHEEEIIINLHKAIGSRWSLIAQQLP-----GRTDNDVKNFWNTKLKKKLMKL 119 (334)
Q Consensus 67 kg~WT~EED~~Ll~~v~~~G~~W~~Ia~~l~-----gRt~~qcr~RW~~~Lr~~ikrg 119 (334)
...||.||...|++++++|+.+|..|+.... .|+-..++.||..+.+..++..
T Consensus 30 ~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 3689999999999999999999999998763 7999999999999998877643
No 79
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.20 E-value=8.8e-05 Score=74.63 Aligned_cols=49 Identities=18% Similarity=0.325 Sum_probs=44.4
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCCCccccccccCCccccccccccccccc
Q 043557 11 NVKRGLWTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYL 61 (334)
Q Consensus 11 ~lkkg~WT~EED~~L~~lv~k~g~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L 61 (334)
.....+||.||.+++++++.+||. +|..||+.++ +|+..||+..|.++.
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~Vg-TKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred cccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 345689999999999999999998 9999999999 999999999987653
No 80
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.15 E-value=0.00069 Score=50.99 Aligned_cols=44 Identities=14% Similarity=0.241 Sum_probs=40.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhhhh-cCCCCCHHHHHHHHHH
Q 043557 67 HASFAPHEEEIIINLHKAIGSRWSLIAQ-QLPGRTDNDVKNFWNT 110 (334)
Q Consensus 67 kg~WT~EED~~Ll~~v~~~G~~W~~Ia~-~l~gRt~~qcr~RW~~ 110 (334)
...||+||-.+..+++.+||.+|..|++ .+++|+-.+|...|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4589999999999999999999999999 5899999999998863
No 81
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.13 E-value=0.00011 Score=58.45 Aligned_cols=48 Identities=13% Similarity=0.248 Sum_probs=42.0
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCccccccccC----Cccccccccccccccc
Q 043557 13 KRGLWTPEEDAKLLAHVANHGTGNWTLVPKKAG----LNRCGKSCRLRWTNYL 61 (334)
Q Consensus 13 kkg~WT~EED~~L~~lv~k~g~~~W~~IA~~l~----~~Rt~~QCr~Rw~~~L 61 (334)
..+.||.||+..|++++++|+. .|..|+..+. .+||..+++.||..+.
T Consensus 29 ~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 29 HDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 3489999999999999999998 9999999983 2799999999987653
No 82
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.13 E-value=0.00062 Score=54.14 Aligned_cols=44 Identities=16% Similarity=0.180 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHHH
Q 043557 67 HASFAPHEEEIIINLHKAIGSRWSLIAQQLPGRTDNDVKNFWNT 110 (334)
Q Consensus 67 kg~WT~EED~~Ll~~v~~~G~~W~~Ia~~l~gRt~~qcr~RW~~ 110 (334)
...||+||-.+..+++..||.+|..|+..+++|+-.+|-..|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 45799999999999999999999999999999999999998854
No 83
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.06 E-value=0.00044 Score=61.73 Aligned_cols=33 Identities=6% Similarity=0.108 Sum_probs=25.9
Q ss_pred CCccCCCCHHHHHHHHHHHHHhC--CCCccccccc
Q 043557 11 NVKRGLWTPEEDAKLLAHVANHG--TGNWTLVPKK 43 (334)
Q Consensus 11 ~lkkg~WT~EED~~L~~lv~k~g--~~~W~~IA~~ 43 (334)
.-....||..|-..|+.++.+|| .+.|..|++.
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~d 38 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARD 38 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHH
Confidence 33456799999999999999999 5689999754
No 84
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.05 E-value=0.00052 Score=53.20 Aligned_cols=50 Identities=18% Similarity=0.417 Sum_probs=41.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----------CchhhhhhcC----CCCCHHHHHHHHHHHhHHH
Q 043557 66 RHASFAPHEEEIIINLHKAIG----------SRWSLIAQQL----PGRTDNDVKNFWNTKLKKK 115 (334)
Q Consensus 66 kkg~WT~EED~~Ll~~v~~~G----------~~W~~Ia~~l----~gRt~~qcr~RW~~~Lr~~ 115 (334)
+...||.+|-..||.+..++. ..|..||..| -.|++.||+.+|.++.+.-
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 456899999999999997632 1599999986 3699999999999887754
No 85
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.70 E-value=0.00047 Score=51.90 Aligned_cols=44 Identities=9% Similarity=0.064 Sum_probs=39.6
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCCCcccccc-ccCCcccccccccccc
Q 043557 13 KRGLWTPEEDAKLLAHVANHGTGNWTLVPK-KAGLNRCGKSCRLRWT 58 (334)
Q Consensus 13 kkg~WT~EED~~L~~lv~k~g~~~W~~IA~-~l~~~Rt~~QCr~Rw~ 58 (334)
....||+||-++..+++.+||. +|..|++ .|+ +|+..+|..-|.
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY 51 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYY 51 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCCHHHHHHHHH
Confidence 3567999999999999999999 9999999 588 999999988764
No 86
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.69 E-value=0.00045 Score=54.93 Aligned_cols=43 Identities=16% Similarity=0.381 Sum_probs=39.4
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccc
Q 043557 14 RGLWTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRLRWT 58 (334)
Q Consensus 14 kg~WT~EED~~L~~lv~k~g~~~W~~IA~~l~~~Rt~~QCr~Rw~ 58 (334)
...||+||.++..+++..||. +|..|+..|+ +|+..+|...|.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~-~Kt~~~cV~~YY 85 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYY 85 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT-CHHHHHHTCT-TCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHHHHcC-CCCHHHHHHHHh
Confidence 357999999999999999998 9999999999 999999988764
No 87
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.62 E-value=0.00011 Score=57.06 Aligned_cols=49 Identities=22% Similarity=0.548 Sum_probs=39.7
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC---------CCcccccccc---CCccccccccccccccc
Q 043557 13 KRGLWTPEEDAKLLAHVANHGT---------GNWTLVPKKA---GLNRCGKSCRLRWTNYL 61 (334)
Q Consensus 13 kkg~WT~EED~~L~~lv~k~g~---------~~W~~IA~~l---~~~Rt~~QCr~Rw~~~L 61 (334)
+...||.+|..+|+++...... .-|..||..| |-.|++.||+.+|.++.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5678999999999999986421 1599999875 35799999999997653
No 88
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.51 E-value=0.0044 Score=60.50 Aligned_cols=103 Identities=15% Similarity=0.199 Sum_probs=77.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccCCccccccccc-------cccccc--------------------------
Q 043557 15 GLWTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRL-------RWTNYL-------------------------- 61 (334)
Q Consensus 15 g~WT~EED~~L~~lv~k~g~~~W~~IA~~l~~~Rt~~QCr~-------Rw~~~L-------------------------- 61 (334)
+.||..|=..++.++.+||..+-..||..|+.+++...++. ||..+-
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999965677766553 221110
Q ss_pred --------C---------CCC--CCCCCCHHHHHHHHHHHHHhC----Cchhhhhhc------------CCCCCHHHHHH
Q 043557 62 --------R---------PDL--RHASFAPHEEEIIINLHKAIG----SRWSLIAQQ------------LPGRTDNDVKN 106 (334)
Q Consensus 62 --------~---------p~l--kkg~WT~EED~~Ll~~v~~~G----~~W~~Ia~~------------l~gRt~~qcr~ 106 (334)
+ +.. ++..||+|||..|+-++.+|| +.|..|-.. +..||...+..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 0 111 345799999999999999999 569998322 35699999999
Q ss_pred HHHHHhHHHhh
Q 043557 107 FWNTKLKKKLM 117 (334)
Q Consensus 107 RW~~~Lr~~ik 117 (334)
|...+++-..+
T Consensus 284 Rc~tLi~~IeK 294 (374)
T 2y9y_A 284 RGNTLLQCLEK 294 (374)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99988875433
No 89
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=94.88 E-value=0.0013 Score=49.19 Aligned_cols=46 Identities=17% Similarity=0.411 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CCccccccccCCcccccccccccccccC
Q 043557 15 GLWTPEEDAKLLAHVANHGT--GNWTLVPKKAGLNRCGKSCRLRWTNYLR 62 (334)
Q Consensus 15 g~WT~EED~~L~~lv~k~g~--~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~ 62 (334)
-.||.|||..|+..+++.|. .-|..||..| +|++.|+..||+.++.
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK 62 (70)
Confidence 36999999999999999886 3699999988 6999999999987653
No 90
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=95.84 E-value=0.0024 Score=50.45 Aligned_cols=44 Identities=23% Similarity=0.496 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CCccccccccCCccccccccccccc
Q 043557 15 GLWTPEEDAKLLAHVANHGT--GNWTLVPKKAGLNRCGKSCRLRWTN 59 (334)
Q Consensus 15 g~WT~EED~~L~~lv~k~g~--~~W~~IA~~l~~~Rt~~QCr~Rw~~ 59 (334)
-.||.|||..|+...++.|. .-|..||+.|+ +|++.|+.+|++.
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~ 79 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRE 79 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHH
Confidence 36999999999999999876 47999999999 9999999999965
No 91
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=94.33 E-value=0.011 Score=46.98 Aligned_cols=48 Identities=13% Similarity=0.270 Sum_probs=39.7
Q ss_pred CccCCCCHHHHHHHHHHHHHhCCCCccccccccC----Ccccccccccccccc
Q 043557 12 VKRGLWTPEEDAKLLAHVANHGTGNWTLVPKKAG----LNRCGKSCRLRWTNY 60 (334)
Q Consensus 12 lkkg~WT~EED~~L~~lv~k~g~~~W~~IA~~l~----~~Rt~~QCr~Rw~~~ 60 (334)
++...||.||...|.+++++|.. .|-.|+.... ..|+..+.+.||..+
T Consensus 28 L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V 79 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence 34468999999999999999988 9999997764 268888888888654
No 92
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=93.96 E-value=0.045 Score=48.54 Aligned_cols=39 Identities=28% Similarity=0.592 Sum_probs=31.3
Q ss_pred CCCCCCCCccCCCCHHHHHHHHHHHHHhCCCCccccccc
Q 043557 5 PCCDKSNVKRGLWTPEEDAKLLAHVANHGTGNWTLVPKK 43 (334)
Q Consensus 5 ~~~~kp~lkkg~WT~EED~~L~~lv~k~g~~~W~~IA~~ 43 (334)
+++.++......||.+||..|+..|.+||.++|..|-..
T Consensus 125 ~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D 163 (211)
T 4b4c_A 125 PCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMD 163 (211)
T ss_dssp CSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence 344445444567999999999999999999999999643
No 93
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=93.60 E-value=0.15 Score=37.69 Aligned_cols=49 Identities=8% Similarity=0.004 Sum_probs=41.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCc---hhhhhhcC--CCCCHHHHHHHHHHHhH
Q 043557 65 LRHASFAPHEEEIIINLHKAIGSR---WSLIAQQL--PGRTDNDVKNFWNTKLK 113 (334)
Q Consensus 65 lkkg~WT~EED~~Ll~~v~~~G~~---W~~Ia~~l--~gRt~~qcr~RW~~~Lr 113 (334)
..+-.||+|.-.+.+++|..+|.. +..|-+.| +|.|..+++.+.+.|-.
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~ 58 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRV 58 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 456689999999999999999954 78888876 78999999999877643
No 94
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=90.66 E-value=0.2 Score=46.84 Aligned_cols=28 Identities=46% Similarity=0.763 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccc
Q 043557 15 GLWTPEEDAKLLAHVANHGTGNWTLVPK 42 (334)
Q Consensus 15 g~WT~EED~~L~~lv~k~g~~~W~~IA~ 42 (334)
..|+.+||..|+..|.+||.|+|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 5799999999999999999999999963
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=90.52 E-value=0.14 Score=47.83 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHHHHhC-Cchhhhhh
Q 043557 69 SFAPHEEEIIINLHKAIG-SRWSLIAQ 94 (334)
Q Consensus 69 ~WT~EED~~Ll~~v~~~G-~~W~~Ia~ 94 (334)
.|+.+||.+|+..|.+|| |.|.+|..
T Consensus 170 ~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 170 NWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 599999999999999999 99999954
No 96
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=90.44 E-value=0.38 Score=45.68 Aligned_cols=41 Identities=17% Similarity=0.332 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHH
Q 043557 68 ASFAPHEEEIIINLHKAIG-SRWSLIAQQLPGRTDNDVKNFW 108 (334)
Q Consensus 68 g~WT~EED~~Ll~~v~~~G-~~W~~Ia~~l~gRt~~qcr~RW 108 (334)
+.||..+...++.++.+|| .+|..||..+.|++...++..+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~ 152 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYN 152 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 4799999999999999999 6799999999999999886543
No 97
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=79.99 E-value=0.57 Score=34.54 Aligned_cols=50 Identities=20% Similarity=0.223 Sum_probs=36.4
Q ss_pred CCccCCCCHHHHHHHHHHHHHhCCC--CccccccccCC-cccccccccccccc
Q 043557 11 NVKRGLWTPEEDAKLLAHVANHGTG--NWTLVPKKAGL-NRCGKSCRLRWTNY 60 (334)
Q Consensus 11 ~lkkg~WT~EED~~L~~lv~k~g~~--~W~~IA~~l~~-~Rt~~QCr~Rw~~~ 60 (334)
...+-.||+|..+..+++|...|.. -+..|.+.|+. +.|..++..+.+.|
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3456789999999999999999952 25677777652 56777776665543
No 98
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=59.31 E-value=5.8 Score=31.92 Aligned_cols=39 Identities=21% Similarity=0.355 Sum_probs=31.6
Q ss_pred HHHHHHHHhCC--------chhhhhhcCCCCCHHHHHHHHHHHhHHH
Q 043557 77 IIINLHKAIGS--------RWSLIAQQLPGRTDNDVKNFWNTKLKKK 115 (334)
Q Consensus 77 ~Ll~~v~~~G~--------~W~~Ia~~l~gRt~~qcr~RW~~~Lr~~ 115 (334)
+|..+|.+.|| .|..|+..+.--.+..+|..|.++|-+-
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 58888999985 5999999883333889999999998765
No 99
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=58.31 E-value=11 Score=30.22 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=30.5
Q ss_pred HHHHHHHHhCC--------chhhhhhcCCC-C---CHHHHHHHHHHHhHHH
Q 043557 77 IIINLHKAIGS--------RWSLIAQQLPG-R---TDNDVKNFWNTKLKKK 115 (334)
Q Consensus 77 ~Ll~~v~~~G~--------~W~~Ia~~l~g-R---t~~qcr~RW~~~Lr~~ 115 (334)
+|..+|.+.|| .|..|+..|.- . .+..+|..|.++|.+-
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~y 94 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPY 94 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 68888999985 69999999822 2 2567899999988765
No 100
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=58.10 E-value=9.7 Score=31.10 Aligned_cols=90 Identities=18% Similarity=0.315 Sum_probs=57.6
Q ss_pred cCCCCHHHH--HHHHHHHHHhCCCCccccccccCCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHHHhCC----
Q 043557 14 RGLWTPEED--AKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLRHASFAPHEEEIIINLHKAIGS---- 87 (334)
Q Consensus 14 kg~WT~EED--~~L~~lv~k~g~~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~~v~~~G~---- 87 (334)
+.+|.+.+. +.|.+.....|. ....++. ++ +|.-. =-+|..+|.+.||
T Consensus 7 ~~r~~~~~~Fl~~L~~F~~~rGt-pl~~~P~-i~-gk~lD-----------------------L~~Ly~~V~~~GG~~~V 60 (121)
T 2rq5_A 7 GRRWGPNVQRLACIKKHLRSQGI-TMDELPL-IG-GCELD-----------------------LACFFRLINEMGGMQQV 60 (121)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTTC-CCSSCCE-ET-TEECC-----------------------HHHHHHHHHHTTSHHHH
T ss_pred hHhcCCcHHHHHHHHHHHHHcCC-CCCCCCc-CC-CEecc-----------------------HHHHHHHHHHcCcHHHh
Confidence 557987765 446666666676 4444442 22 22221 1368888999996
Q ss_pred ----chhhhhhcC--CCCC---HHHHHHHHHHHhHHHhhhCCCCCCCCchHHHH
Q 043557 88 ----RWSLIAQQL--PGRT---DNDVKNFWNTKLKKKLMKLGIDPITHKPFSQI 132 (334)
Q Consensus 88 ----~W~~Ia~~l--~gRt---~~qcr~RW~~~Lr~~ikrg~~t~~E~~~l~~l 132 (334)
.|..|+..| +.-+ ...+|..|.++|-+--. ++++|...+.+-
T Consensus 61 t~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE~---~~~~e~~~l~~~ 111 (121)
T 2rq5_A 61 TDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDS---LSPEEHRRLEKE 111 (121)
T ss_dssp HHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHHH---CCHHHHHHHHHH
T ss_pred cccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHHC---cCHHHHhhHHHH
Confidence 599999988 3332 46789999999987642 566665555543
No 101
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=57.71 E-value=5.5 Score=38.77 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=27.9
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC---CCcccccccc
Q 043557 13 KRGLWTPEEDAKLLAHVANHGT---GNWTLVPKKA 44 (334)
Q Consensus 13 kkg~WT~EED~~L~~lv~k~g~---~~W~~IA~~l 44 (334)
++..||.+||..|+-++.+||. ++|..|-..+
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~I 261 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEI 261 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4567999999999999999999 8999996544
No 102
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=57.59 E-value=14 Score=28.99 Aligned_cols=39 Identities=13% Similarity=0.348 Sum_probs=30.2
Q ss_pred HHHHHHHHhCC--------chhhhhhcCC-CCC---HHHHHHHHHHHhHHH
Q 043557 77 IIINLHKAIGS--------RWSLIAQQLP-GRT---DNDVKNFWNTKLKKK 115 (334)
Q Consensus 77 ~Ll~~v~~~G~--------~W~~Ia~~l~-gRt---~~qcr~RW~~~Lr~~ 115 (334)
+|...|.+.|| .|..|+..+. ..+ +..+|..|.++|-+-
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 57888888885 6999999982 233 567888899888764
No 103
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=56.68 E-value=13 Score=30.26 Aligned_cols=40 Identities=23% Similarity=0.260 Sum_probs=31.6
Q ss_pred HHHHHHHHHhCC--------chhhhhhcC--CCC---CHHHHHHHHHHHhHHH
Q 043557 76 EIIINLHKAIGS--------RWSLIAQQL--PGR---TDNDVKNFWNTKLKKK 115 (334)
Q Consensus 76 ~~Ll~~v~~~G~--------~W~~Ia~~l--~gR---t~~qcr~RW~~~Lr~~ 115 (334)
-+|..+|.+.|| .|..|+..| +.. ....+|..|.++|.+-
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~y 107 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPY 107 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 368888999985 699999988 333 2578899999999875
No 104
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=56.24 E-value=13 Score=31.18 Aligned_cols=50 Identities=16% Similarity=0.158 Sum_probs=35.5
Q ss_pred HHHHHHHHHhCC--------chhhhhhcC--CCC---CHHHHHHHHHHHhHHH--hhhCCCCCCC
Q 043557 76 EIIINLHKAIGS--------RWSLIAQQL--PGR---TDNDVKNFWNTKLKKK--LMKLGIDPIT 125 (334)
Q Consensus 76 ~~Ll~~v~~~G~--------~W~~Ia~~l--~gR---t~~qcr~RW~~~Lr~~--ikrg~~t~~E 125 (334)
-+|..+|.+.|| .|..|+..| +.. .+..+|..|.++|.+- ..+|.-.+.+
T Consensus 67 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~ 131 (145)
T 2kk0_A 67 FMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNE 131 (145)
T ss_dssp HHHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHH
T ss_pred HHHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 358888999985 599999988 332 2578899999999875 3344434433
No 105
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=54.82 E-value=15 Score=29.85 Aligned_cols=39 Identities=23% Similarity=0.331 Sum_probs=30.7
Q ss_pred HHHHHHHHhCC--------chhhhhhcC-CCCC---HHHHHHHHHHHhHHH
Q 043557 77 IIINLHKAIGS--------RWSLIAQQL-PGRT---DNDVKNFWNTKLKKK 115 (334)
Q Consensus 77 ~Ll~~v~~~G~--------~W~~Ia~~l-~gRt---~~qcr~RW~~~Lr~~ 115 (334)
+|..+|.++|| .|..|+..| ...+ +..+|..|.++|.+-
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~y 105 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAF 105 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 58888999985 699999998 3333 467889999998775
No 106
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=53.83 E-value=9 Score=31.29 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=31.9
Q ss_pred HHHHHHHHhCC--------chhhhhhcCCCCCHHHHHHHHHHHhHHHhh
Q 043557 77 IIINLHKAIGS--------RWSLIAQQLPGRTDNDVKNFWNTKLKKKLM 117 (334)
Q Consensus 77 ~Ll~~v~~~G~--------~W~~Ia~~l~gRt~~qcr~RW~~~Lr~~ik 117 (334)
+|..+|.+.|| .|..|+..|.--.+..+|..|.++|-+--.
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHHH
Confidence 47778888885 599999988333389999999999987643
No 107
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=52.62 E-value=16 Score=29.56 Aligned_cols=39 Identities=15% Similarity=0.303 Sum_probs=29.9
Q ss_pred HHHHHHHHhCC--------chhhhhhcCCC-CC---HHHHHHHHHHHhHHH
Q 043557 77 IIINLHKAIGS--------RWSLIAQQLPG-RT---DNDVKNFWNTKLKKK 115 (334)
Q Consensus 77 ~Ll~~v~~~G~--------~W~~Ia~~l~g-Rt---~~qcr~RW~~~Lr~~ 115 (334)
+|..+|.+.|| .|..|+..|.- .+ +..+|..|.++|-+-
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 58888999985 59999998822 22 467888898888765
No 108
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=45.25 E-value=4.2 Score=33.34 Aligned_cols=59 Identities=14% Similarity=0.233 Sum_probs=43.1
Q ss_pred HHHHHHHHHhCC-------CCccccccccCCcccc----cccccccccccCCCCCCCCCCHHHHHHHHHHHHH
Q 043557 23 AKLLAHVANHGT-------GNWTLVPKKAGLNRCG----KSCRLRWTNYLRPDLRHASFAPHEEEIIINLHKA 84 (334)
Q Consensus 23 ~~L~~lv~k~g~-------~~W~~IA~~l~~~Rt~----~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~~v~~ 84 (334)
-+|..+|.+.|. ..|..||..|+...+. ...+..|.++|.|- ...+++|-..|..-|..
T Consensus 45 ~~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v~~ 114 (121)
T 2rq5_A 45 ACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEVLM 114 (121)
T ss_dssp HHHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHHHH
Confidence 468888888874 4899999999754433 35677888888762 23788898888877653
No 109
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=42.12 E-value=12 Score=28.68 Aligned_cols=39 Identities=18% Similarity=0.292 Sum_probs=28.7
Q ss_pred HHHHHHHHhCC--------chhhhhhcCC-CC---CHHHHHHHHHHHhHHH
Q 043557 77 IIINLHKAIGS--------RWSLIAQQLP-GR---TDNDVKNFWNTKLKKK 115 (334)
Q Consensus 77 ~Ll~~v~~~G~--------~W~~Ia~~l~-gR---t~~qcr~RW~~~Lr~~ 115 (334)
+|..+|.+.|| .|..|+..+. .. .+..+|..|.++|.+-
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~y 90 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYPY 90 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHHH
Confidence 57888888884 6999999872 12 2567888888887654
No 110
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=35.85 E-value=14 Score=29.04 Aligned_cols=40 Identities=10% Similarity=0.237 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCC--------chhhhhhcC--CCC---CHHHHHHHHHHHhHHH
Q 043557 76 EIIINLHKAIGS--------RWSLIAQQL--PGR---TDNDVKNFWNTKLKKK 115 (334)
Q Consensus 76 ~~Ll~~v~~~G~--------~W~~Ia~~l--~gR---t~~qcr~RW~~~Lr~~ 115 (334)
-+|..+|.+.|| .|..|+..| +.. .+..+|..|.++|.+-
T Consensus 36 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~y 88 (107)
T 1ig6_A 36 WTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPY 88 (107)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTT
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 357888888884 699999987 222 2467889998888754
No 111
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=35.31 E-value=5.1 Score=32.27 Aligned_cols=39 Identities=18% Similarity=0.335 Sum_probs=29.0
Q ss_pred HHHHHHHHhCC-------CCccccccccCCcccccccccccccccCC
Q 043557 24 KLLAHVANHGT-------GNWTLVPKKAGLNRCGKSCRLRWTNYLRP 63 (334)
Q Consensus 24 ~L~~lv~k~g~-------~~W~~IA~~l~~~Rt~~QCr~Rw~~~L~p 63 (334)
+|..+|.+.|. ..|..||..|+... +..++..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 57777777764 47999999998433 67777778777754
No 112
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=33.77 E-value=96 Score=23.97 Aligned_cols=85 Identities=14% Similarity=0.102 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccc---ccccccc--CCCCCCCCCCHHHHHHHHHHHHHhC-Cch
Q 043557 16 LWTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCR---LRWTNYL--RPDLRHASFAPHEEEIIINLHKAIG-SRW 89 (334)
Q Consensus 16 ~WT~EED~~L~~lv~k~g~~~W~~IA~~l~~~Rt~~QCr---~Rw~~~L--~p~lkkg~WT~EED~~Ll~~v~~~G-~~W 89 (334)
..|.++-..++.++. -|. .-.+||+.+| .+...++ .+|..+- ...-+....+++++..|+.+ ...+ -.-
T Consensus 6 ~~s~~~r~~i~~~~~-~G~-s~~~ia~~lg--is~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~-~~~~~~s~ 80 (141)
T 1u78_A 6 ALSDTERAQLDVMKL-LNV-SLHEMSRKIS--RSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRA-ASNSCKTA 80 (141)
T ss_dssp CCCHHHHHHHHHHHH-TTC-CHHHHHHHHT--CCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHH-HHHCCCCH
T ss_pred cCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHH-HhCCCCCH
Confidence 477888887777774 344 6789999987 3333332 2222211 11112235888888888877 3333 234
Q ss_pred hhhhhcCCC-CCHHHHH
Q 043557 90 SLIAQQLPG-RTDNDVK 105 (334)
Q Consensus 90 ~~Ia~~l~g-Rt~~qcr 105 (334)
..|+..+.- -+...++
T Consensus 81 ~~i~~~lg~~~s~~tV~ 97 (141)
T 1u78_A 81 RDIRNELQLSASKRTIL 97 (141)
T ss_dssp HHHHHHTTCCSCHHHHH
T ss_pred HHHHHHHCCCccHHHHH
Confidence 567776622 3444443
No 113
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=32.83 E-value=1.1e+02 Score=24.60 Aligned_cols=66 Identities=9% Similarity=0.071 Sum_probs=41.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccccCCcccccccccccccc------cCCCCC----CCCCCHHHHHHHHHHHHH
Q 043557 15 GLWTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNY------LRPDLR----HASFAPHEEEIIINLHKA 84 (334)
Q Consensus 15 g~WT~EED~~L~~lv~k~g~~~W~~IA~~l~~~Rt~~QCr~Rw~~~------L~p~lk----kg~WT~EED~~Ll~~v~~ 84 (334)
.+.|.++-..++.++. .|. ....||+.++. +...+ .||.+. +.+..+ ....++++.+.|++++.+
T Consensus 24 ~~~s~e~r~~ii~l~~-~G~-s~~~IA~~lgi--s~~TV-~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 98 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QGV-RPCDISRQLRV--SHGCV-SKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQ 98 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HTC-CHHHHHHHHTC--CSHHH-HHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCC-CHHHHHHHHCc--CHHHH-HHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4688888888888874 454 77899999873 33332 233322 222222 235788888888888865
Q ss_pred h
Q 043557 85 I 85 (334)
Q Consensus 85 ~ 85 (334)
.
T Consensus 99 ~ 99 (159)
T 2k27_A 99 N 99 (159)
T ss_dssp C
T ss_pred C
Confidence 4
No 114
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=32.36 E-value=41 Score=27.76 Aligned_cols=45 Identities=7% Similarity=0.065 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHHHHHhHHHhhh
Q 043557 73 HEEEIIINLHKAIG-SRWSLIAQQLPGRTDNDVKNFWNTKLKKKLMK 118 (334)
Q Consensus 73 EED~~Ll~~v~~~G-~~W~~Ia~~l~gRt~~qcr~RW~~~Lr~~ikr 118 (334)
+-|.+|+.+.++.| -.|..||+.+ |=+...|+.|+..+....+-+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 56888999998888 5799999999 889999999998887776554
No 115
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=28.12 E-value=36 Score=28.46 Aligned_cols=35 Identities=20% Similarity=0.369 Sum_probs=26.9
Q ss_pred cccccccCCcccccccccccccccCCCCCCCCCCHHHHHHHHH
Q 043557 38 TLVPKKAGLNRCGKSCRLRWTNYLRPDLRHASFAPHEEEIIIN 80 (334)
Q Consensus 38 ~~IA~~l~~~Rt~~QCr~Rw~~~L~p~lkkg~WT~EED~~Ll~ 80 (334)
..||..+. |+++.+||..+. +. ..+|+||++.+++
T Consensus 119 ~~vA~~ik-gkt~eeir~~f~------I~-nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 119 QTVADMIK-GKTPEEIRTTFN------IK-NDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHTTT-TCCHHHHHHHTT------CC-CCCCHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHcC------CC-CCCCHHHHHHHHH
Confidence 56788887 899999998762 22 3599999988764
No 116
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=25.52 E-value=77 Score=21.51 Aligned_cols=43 Identities=9% Similarity=0.114 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHHHhCCchhhhhhcCCCCCHHHHHHHHHHHhHH
Q 043557 70 FAPHEEEIIINLHKAIGSRWSLIAQQLPGRTDNDVKNFWNTKLKK 114 (334)
Q Consensus 70 WT~EED~~Ll~~v~~~G~~W~~Ia~~l~gRt~~qcr~RW~~~Lr~ 114 (334)
+++ .+..++.+.-..|-.+..||..+ |-+...++.+....++.
T Consensus 16 L~~-~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 16 LTT-DQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp SCH-HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 444 44455555556678899999999 77888888877655543
No 117
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=24.81 E-value=80 Score=22.11 Aligned_cols=44 Identities=16% Similarity=0.318 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHHH----hCCchhhhhhcCCCCCHHHHHHHHHHHhHHH
Q 043557 70 FAPHEEEIIINLHKA----IGSRWSLIAQQLPGRTDNDVKNFWNTKLKKK 115 (334)
Q Consensus 70 WT~EED~~Ll~~v~~----~G~~W~~Ia~~l~gRt~~qcr~RW~~~Lr~~ 115 (334)
.++.|- .++.+.-- .|-.|..||..+ |-+...|+.+....++..
T Consensus 11 L~~~er-~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 11 LSEREA-MVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKL 58 (73)
T ss_dssp SCHHHH-HHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 344444 44444443 467899999999 889999988877666544
No 118
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=21.77 E-value=48 Score=28.59 Aligned_cols=17 Identities=29% Similarity=0.624 Sum_probs=13.9
Q ss_pred CCCccCCCCHHHHHHHH
Q 043557 10 SNVKRGLWTPEEDAKLL 26 (334)
Q Consensus 10 p~lkkg~WT~EED~~L~ 26 (334)
|.-..|-||+|+|+.|.
T Consensus 110 P~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLK 126 (168)
T ss_dssp CTTCTTCCCHHHHHHHH
T ss_pred CCCCCCCCChhhHHHHH
Confidence 55567889999999876
No 119
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=21.06 E-value=24 Score=29.40 Aligned_cols=54 Identities=22% Similarity=0.332 Sum_probs=34.4
Q ss_pred HHHHHHHHhCC-------CCccccccccCCccc----ccccccccccccCC--CCCCCCCCHHHHHH
Q 043557 24 KLLAHVANHGT-------GNWTLVPKKAGLNRC----GKSCRLRWTNYLRP--DLRHASFAPHEEEI 77 (334)
Q Consensus 24 ~L~~lv~k~g~-------~~W~~IA~~l~~~Rt----~~QCr~Rw~~~L~p--~lkkg~WT~EED~~ 77 (334)
+|..+|.+.|. ..|.+|+..|+...+ +..++..|.++|.| ...+|.=.++|-+.
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~~~~ 134 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQA 134 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHHHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 46667777764 479999999985332 34667778888876 23345444444433
No 120
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=20.48 E-value=1.2e+02 Score=25.19 Aligned_cols=46 Identities=13% Similarity=0.179 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhC-CchhhhhhcCCCCCHHHHHHHHHHHhHHHhhh
Q 043557 72 PHEEEIIINLHKAIG-SRWSLIAQQLPGRTDNDVKNFWNTKLKKKLMK 118 (334)
Q Consensus 72 ~EED~~Ll~~v~~~G-~~W~~Ia~~l~gRt~~qcr~RW~~~Lr~~ikr 118 (334)
.+-|.+|+.++.+.| -.+..||+.+ |-+...|+.|+..+....+-+
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~I~ 72 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIK 72 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 356778888888887 5699999999 779999999998777665543
Done!